Non-redundant TF clusters (v1.0 2020-04-14)

Jeff Vierstra, Altius Institute for Biomedical Sciences
E-mail: jvierstra (at) altius.org

Addtional information and genome-wide scans can be found here.

Dashed black lines demarcate the boundary of the motif archetype to which the coordinates of the the matches of individual models are shifted.

HD/1:homeodomain

2 motif models

HD/2:homeodomain

186 motif models

HD/3:homeodomain

1 motif models

HD/4:homeodomain

17 motif models

HD/5:homeodomain

6 motif models

HD/6:homeodomain

11 motif models

HD/7:homeodomain

5 motif models

HD/8:homeodomain

26 motif models

HD/9:homeodomain

1 motif models

HD/10:homeodomain

9 motif models

HD/11:homeodomain

1 motif models

HD/12:homeodomain

7 motif models

NFY:NFY

12 motif models

CUX/1:CUT

18 motif models

CUX/3:CUT

1 motif models

CUX/2:CUT

4 motif models

CUX/4:CUT

1 motif models

HD/13:homeodomain

2 motif models

HD/14:homeodomain

9 motif models

HD/15:homeodomain

2 motif models

HD/16:homeodomain

8 motif models

HD/17:homeodomain

24 motif models

CPEB1:RRM

3 motif models

HD/18:homeodomain

32 motif models

HD/19:homeodomain

3 motif models

HD/20:homeodomain

30 motif models

HD/21:homeodomain

2 motif models

HD/22:homeodomain

14 motif models

TCF/LEF:HMG

12 motif models

NR/1:nuclearreceptor

33 motif models

NR/2:nuclearreceptor

2 motif models

NR/3:nuclearreceptor

15 motif models

NR/4:nuclearreceptor

5 motif models

NR/5:nuclearreceptor

2 motif models

NR/6:nuclearreceptor

1 motif models

NR/7:nuclearreceptor

17 motif models

NR/8:nuclearreceptor

1 motif models

NR/9:nuclearreceptor

1 motif models

NR/10:nuclearreceptor

1 motif models

NR/11:nuclearreceptor

10 motif models

NR/12:nuclearreceptor

30 motif models

NR/13:nuclearreceptor

16 motif models

NR/14:nuclearreceptor

5 motif models

NR/15:nuclearreceptor

6 motif models

NR/16:nuclearreceptor

20 motif models

NR/17:nuclearreceptor

10 motif models

NR/18:nuclearreceptor

4 motif models

NR/19:nuclearreceptor

8 motif models

CREB/ATF/1:bZIP

23 motif models

CREB/ATF/2:bZIP

15 motif models

CREB/ATF/3:bZIP

8 motif models

CCAAT/CEBP:bZIP

37 motif models

AP1/2:bZIP

12 motif models

AP1/1:bZIP

41 motif models

MAF:bZIP

24 motif models

ZNF317:C2H2

1 motif models

ZNF547:C2H2

1 motif models

Ebox/CACGTG/1:bHLH

68 motif models

Ebox/CACGTG/2:bHLH

17 motif models

HIF:bHLH

8 motif models

CREB3/XBP1:bZIP

11 motif models

Ebox/CATATG:bHLH

22 motif models

Ebox/CAGATGG:bHLH

18 motif models

HEN1:bHLH

2 motif models

Ebox/CAGCTG:bHLH

37 motif models

SCRT1:C2H2

4 motif models

SNAI2:C2H2

4 motif models

Ebox/CACCTG:bHLH

19 motif models

MIES:MEIS

25 motif models

TBX/1:TBX

6 motif models

TBX/2:TBX

7 motif models

TBX/3:TBX

5 motif models

TBX/4:TBX

34 motif models

SREBF1:bHLH-ZIP

6 motif models

ZNF257:C2H2

1 motif models

FOX/1:forkhead

2 motif models

FOX/2:forkhead

4 motif models

FOX/3:forkhead

4 motif models

FOX/4:forkhead

31 motif models

FOX/5:forkhead

51 motif models

ZNF435:C2H2

1 motif models

POU/2:POU

12 motif models

POU/3:POU

11 motif models

OCT4+SOX2:POU

7 motif models

POU/1:POU

24 motif models

ARI5B:ARID

2 motif models

FOX/6:forkhead

5 motif models

ARI5A:ARID

1 motif models

SOX/1:HMG

21 motif models

DMRT1:DM

2 motif models

SOX/2:HMG

3 motif models

SOX/3:HMG

16 motif models

SOX/4:HMG

22 motif models

SOX/5:HMG

14 motif models

SPI:ETS

11 motif models

ETS/2:ETS

24 motif models

MECP2:MBD

2 motif models

ETS/1:ETS

71 motif models

NFAT/2:NFAT

5 motif models

NFAT/1:NFAT

8 motif models

NFAC/2:NFAT

2 motif models

NFAT/3:NFAT

1 motif models

IRF/3:IRF

3 motif models

IRF/1:IRF

16 motif models

PRDM1:C2H2

4 motif models

IRF/2:IRF

16 motif models

ZNF28:C2H2

1 motif models

ZIM3:C2H2

1 motif models

KLF/SP/2:C2H2

37 motif models

ZIC/2:C2H2

6 motif models

EGR:C2H2

13 motif models

KLF/SP/1:C2H2

20 motif models

GC-tract:C2H2

13 motif models

MZF1:C2H2

2 motif models

ZNF324:C2H2

1 motif models

PRDM5:C2H2

1 motif models

EWSR1/FLI1:ETS

1 motif models

ZNF436:C2H2

1 motif models

ZNF528:C2H2

1 motif models

LEF1:HMG

4 motif models

ZNF354:C2H2

5 motif models

FEZF1:C2H2

1 motif models

ZNF274:C2H2

1 motif models

ZNF41:C2H2

1 motif models

SMARCA5:MYB/SANT

4 motif models

ZNF418:C2H2

1 motif models

ZNF85:C2H2

1 motif models

NFI/3:NFI

3 motif models

SMAD:SMAD

3 motif models

OSR2:C2H2

1 motif models

PRDM9:C2H2

1 motif models

THAP1:not_classified

1 motif models

ZSCAN3:C2H2

1 motif models

ZNF549:C2H2

1 motif models

ZNF134:C2H2

1 motif models

ZNF708:C2H2

1 motif models

ZNF768:C2H2

1 motif models

BATF:bZIP

4 motif models

AIRE:not_classified

2 motif models

ZNF563:C2H2

1 motif models

ZNF667:C2H2

1 motif models

ZNF554:C2H2

1 motif models

ZNF140:C2H2

1 motif models

ZFX:C2H2

3 motif models

YY1:C2H2

10 motif models

ZBTB6:C2H2

1 motif models

SMAD:SMAD

4 motif models

HAND1:bHLH

2 motif models

PRDM14:C2H2

2 motif models

SPZ1:bHLH-ZIP

1 motif models

REST/NRSF:C2H2

3 motif models

ZNF332:C2H2

2 motif models

ZNF335:C2H2

3 motif models

ZNF382:C2H2

1 motif models

KAISO:C2H2

3 motif models

E2F/2:E2F

14 motif models

E2F/3:E2F

4 motif models

E2F/4:E2F

4 motif models

NFKB/3:NFAT

2 motif models

NFKB/1:NFAT

10 motif models

NFKB/2:NFAT

4 motif models

REL-halfsite:NFAT

2 motif models

ZNF282:C2H2

2 motif models

FOX/7:forkhead

4 motif models

RBPJ:not_classified

4 motif models

TEAD:TEA

14 motif models

STAT/1:STAT

3 motif models

NFAT/4:NFAT

1 motif models

BCL6/1:C2H2

2 motif models

BCL6/2:C2H2

3 motif models

STAT/2:STAT

13 motif models

ZNF143:C2H2

2 motif models

ZNF143:C2H2

7 motif models

EBF1:EBF

4 motif models

ZBTB48:C2H2

1 motif models

PRDM16:C2H2

1 motif models

ZNF423:C2H2

1 motif models

RUNX/2:RUNX

2 motif models

RUNX/1:RUNX

16 motif models

SIX/1:SIX

6 motif models

GFI:C2H2

6 motif models

TATA:not_classified

3 motif models

MEF2:MADS

14 motif models

SRF:MADS

5 motif models

HLTF:not_classified

1 motif models

E2F/1:E2F

15 motif models

HIC/1:C2H2

5 motif models

NFI/2:NFI

3 motif models

NFI/1:NFI

10 motif models

SOX/6:HMG

7 motif models

SOX/7:HMG

1 motif models

NRF1:CNC-bZIP

4 motif models

ZNF384/1:C2H2

1 motif models

ZNF384/2:C2H2

1 motif models

HOMEZ:HOMEZ

1 motif models

IRF/4:IRF

1 motif models

ZNF586:C2H2

1 motif models

ZNF24:C2H2

1 motif models

MFZ1:C2H2

1 motif models

CENBP:CENPB

2 motif models

GCM:GCM

6 motif models

SOX/8:HMG

4 motif models

FOX/8:forkhead

5 motif models

HD/23:homeodomain

3 motif models

HD/24:homeodomain

2 motif models

MTF1:C2H2

4 motif models

SMAD:MAD

3 motif models

ZNF146:C2H2

2 motif models

HSFY2:HSF

3 motif models

HD/25:homeodomain

2 motif models

SPDEF/1:ETS

2 motif models

SPDEF/2:ETS

2 motif models

ZNF524:C2H2

2 motif models

DMRT3:DM

1 motif models

DDIT3+CEBPA:bZIP

1 motif models

NR2E3:nuclearreceptor

1 motif models

ZBTB14:C2H2

1 motif models

ZNF57:C2H2

1 motif models

ZNF250:C2H2

1 motif models

ZNF490:C2H2

1 motif models

ZNF53:C2H2

1 motif models

ZNF784:C2H2

1 motif models

GMEB2/1:SAND

1 motif models

LIN54:CXC

1 motif models

PRDM4:C2H2

1 motif models

ZBTB49:C2H2

1 motif models

ZNF136:C2H2

1 motif models

ZNF431:C2H2

1 motif models

ZNF306:C2H2

1 motif models

ZNF713:C2H2

1 motif models

ZNF85:C2H2

1 motif models

ZNF652:C2H2

1 motif models

P53-like/2:P53L

1 motif models

P53-like/3:P53L

1 motif models

ZNF232:C2H2

1 motif models

ZNF410:C2H2

2 motif models

ZBED1:C2H2

2 motif models

PROX1:PROX

2 motif models

MBD2:MBD

2 motif models

OVOL1:C2H2

2 motif models

EVI1/MECOM:C2H2

3 motif models

GATA:C2H2

23 motif models

HIC/2:C2H2

2 motif models

ZFN121:C2H2

1 motif models

RFX/2:RFX

4 motif models

RFX/3:RFX

2 motif models

RFX/1:RFX

19 motif models

NR/20:nuclearreceptor

13 motif models

HSF:HSF

11 motif models

SMARCA1:MYB/SANT

1 motif models

ZNF680:C2H2

1 motif models

MYB/5:MYB

4 motif models

MYB/1:MYB

3 motif models

MYB/2:MYB

2 motif models

MYB/3:MYB

3 motif models

MYB/4:MYB

3 motif models

P53-like/1:P53L

12 motif models

GRHL:CP2

9 motif models

TFCP2:CP2

2 motif models

ZNF329:C2H2

1 motif models

GLIS:C2H2

6 motif models

GLI:C2H2

10 motif models

TFAP2/2:TFAP

9 motif models

TFAP2/1:TFAP

24 motif models

CTCF:C2H2

7 motif models

INSM1:C2H2

3 motif models

ZBTB7A:C2H2

2 motif models

PLAG1:C2H2

1 motif models

ZNF320:C2H2

1 motif models

ZNF331:C2H2

1 motif models

ZNF449:C2H2

1 motif models

ZKSCAN1:C2H2

2 motif models

ZIC:C2H2

10 motif models

HINFP1/1:C2H2

4 motif models

HINFP1/2:C2H2

1 motif models

HINFP1/3:C2H2

1 motif models

GMEB2/2:SAND

4 motif models

GMEB2/3:SAND

1 motif models

FOX/9:forkhead

1 motif models

SIX/2:SIX

1 motif models

PAX/1:PAX

10 motif models

PAX/2:PAX

3 motif models

PAX-halfsite:PAX

1 motif models

AHR:bHLH

3 motif models

KLF/SP/3:C2H2

2 motif models

ZSCAN4:C2H2

2 motif models