2025-01-31 09:31:53,410 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:53,413 INFO Extracting cutcounts from bam file 2025-01-31 09:35:15,535 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:35:15,589 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:35:15,592 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:35:15,592 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:35:15,592 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:35:15,593 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:35:15,593 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:35:17,413 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:35:17,933 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:35:18,110 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:35:18,115 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:35:18,375 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:35:18,649 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:35:19,067 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:35:19,703 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:35:19,773 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:35:20,011 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:35:20,015 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:35:20,358 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:35:21,103 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:35:21,199 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:35:21,275 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:35:22,281 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:35:22,281 INFO Total cutcounts = 33792728 2025-01-31 09:35:22,286 INFO Smoothing signal using MODWT 2025-01-31 09:35:22,288 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:35:22,350 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:22,355 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:22,355 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:22,355 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:22,357 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:22,357 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:55,674 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:57,337 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:58,652 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:58,834 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:28,055 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:49,060 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:56,202 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:58,049 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:10,815 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:14,395 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:20,469 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:47,290 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:49,847 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:55,684 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:57,928 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:43:32,119 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:43:32,120 INFO Estimating parameters of background model 2025-01-31 09:43:32,120 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:43:37,569 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:43:37,767 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:43:37,796 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:43:38,452 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:43:39,101 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:43:40,156 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:44:01,212 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:44:01,215 DEBUG chr5: Signal quantile: 0.995. signal threshold: 22. Best RMSEA: 0.042 2025-01-31 09:44:03,109 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:44:03,112 DEBUG chr4: Signal quantile: 0.995. signal threshold: 23. Best RMSEA: 0.040 2025-01-31 09:44:03,140 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:44:03,143 DEBUG chr3: Signal quantile: 0.995. signal threshold: 20. Best RMSEA: 0.044 2025-01-31 09:44:06,564 DEBUG chr5 total SNP count: 261874 2025-01-31 09:44:06,564 DEBUG chr5 length: 151834684 2025-01-31 09:44:06,564 DEBUG ----------------------------------------- 2025-01-31 09:44:06,564 INFO Processing SNPs in chr5 2025-01-31 09:44:06,652 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:44:06,662 WARNING chrX: Best RMSEA: 0.057. Chromosome fit might be poorly approximated. 2025-01-31 09:44:06,662 DEBUG chrX: Signal quantile: 0.995. signal threshold: 15. Best RMSEA: 0.057 2025-01-31 09:44:06,833 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 261874)] 2025-01-31 09:44:07,021 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:08,545 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:44:08,555 DEBUG chr2: Signal quantile: 0.995. signal threshold: 22. Best RMSEA: 0.041 2025-01-31 09:44:08,955 DEBUG chr4 total SNP count: 265181 2025-01-31 09:44:08,955 DEBUG chr4 length: 156508116 2025-01-31 09:44:08,955 DEBUG ----------------------------------------- 2025-01-31 09:44:08,955 INFO Processing SNPs in chr4 2025-01-31 09:44:09,323 DEBUG chr3 total SNP count: 275958 2025-01-31 09:44:09,323 DEBUG chr3 length: 160039680 2025-01-31 09:44:09,323 DEBUG ----------------------------------------- 2025-01-31 09:44:09,323 INFO Processing SNPs in chr3 2025-01-31 09:44:09,402 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 67113), (67113, 265181)] 2025-01-31 09:44:09,557 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:09,626 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 275958)] 2025-01-31 09:44:09,850 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:11,617 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:44:11,620 DEBUG chr1: Signal quantile: 0.995. signal threshold: 22. Best RMSEA: 0.042 2025-01-31 09:44:13,616 DEBUG chrX total SNP count: 249312 2025-01-31 09:44:13,617 DEBUG chrX length: 171031299 2025-01-31 09:44:13,617 DEBUG ----------------------------------------- 2025-01-31 09:44:13,617 INFO Processing SNPs in chrX 2025-01-31 09:44:14,041 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 33181), (33181, 33241), (33241, 177764), (177764, 249312)] 2025-01-31 09:44:14,077 DEBUG chr2 total SNP count: 319800 2025-01-31 09:44:14,077 DEBUG chr2 length: 182113224 2025-01-31 09:44:14,077 DEBUG ----------------------------------------- 2025-01-31 09:44:14,077 INFO Processing SNPs in chr2 2025-01-31 09:44:14,163 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:14,600 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 311876), (311876, 319800)] 2025-01-31 09:44:14,826 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:16,399 DEBUG chr1 total SNP count: 344380 2025-01-31 09:44:16,399 DEBUG chr1 length: 195471971 2025-01-31 09:44:16,400 DEBUG ----------------------------------------- 2025-01-31 09:44:16,400 INFO Processing SNPs in chr1 2025-01-31 09:44:16,747 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 344380)] 2025-01-31 09:44:16,985 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:18,091 DEBUG Segmenting atomic regions: 2025-01-31 09:44:18,185 DEBUG Segmenting atomic regions: 2025-01-31 09:44:18,209 DEBUG Processing 1/222 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,297 DEBUG Processing 1/109 atomic regions from SNP 0 to 602 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:19,453 DEBUG Processing 2/109 atomic regions from SNP 302 to 904 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:19,459 DEBUG Processing 2/222 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,690 DEBUG Processing 3/109 atomic regions from SNP 604 to 1206 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:19,696 DEBUG Processing 3/222 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,926 DEBUG Processing 4/109 atomic regions from SNP 906 to 1508 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:19,931 DEBUG Processing 4/222 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,164 DEBUG Processing 5/222 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,166 DEBUG Processing 5/109 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:20,394 DEBUG Processing 6/222 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,408 DEBUG Processing 6/109 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:20,630 DEBUG Processing 7/222 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,651 DEBUG Processing 7/109 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:20,868 DEBUG Processing 8/222 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,882 DEBUG Processing 8/109 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:21,101 DEBUG Processing 9/222 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,111 DEBUG Processing 9/109 atomic regions from SNP 2416 to 3018 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:21,330 DEBUG Processing 10/222 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,343 DEBUG Processing 10/109 atomic regions from SNP 2718 to 3320 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:21,560 DEBUG Processing 11/222 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,585 DEBUG Processing 11/109 atomic regions from SNP 3020 to 3622 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:21,793 DEBUG Processing 12/222 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,831 DEBUG Processing 12/109 atomic regions from SNP 3322 to 3924 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:22,028 DEBUG Processing 13/222 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,085 DEBUG Processing 13/109 atomic regions from SNP 3624 to 4226 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:22,264 DEBUG Processing 14/222 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,347 DEBUG Processing 14/109 atomic regions from SNP 3926 to 4528 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:22,499 DEBUG Processing 15/222 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,620 DEBUG Processing 15/109 atomic regions from SNP 4228 to 4830 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:22,732 DEBUG Processing 16/222 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,894 DEBUG Processing 16/109 atomic regions from SNP 4530 to 5132 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:22,965 DEBUG Processing 17/222 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,177 DEBUG Processing 17/109 atomic regions from SNP 4832 to 5434 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:23,201 DEBUG Processing 18/222 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,452 DEBUG Processing 19/222 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,456 DEBUG Processing 18/109 atomic regions from SNP 5134 to 5736 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:23,692 DEBUG Processing 20/222 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,718 DEBUG Processing 19/109 atomic regions from SNP 5436 to 6038 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:23,927 DEBUG Processing 21/222 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,964 DEBUG Processing 20/109 atomic regions from SNP 5738 to 6340 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:24,161 DEBUG Processing 22/222 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,222 DEBUG Processing 21/109 atomic regions from SNP 6040 to 6642 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:24,396 DEBUG Processing 23/222 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,479 DEBUG Processing 22/109 atomic regions from SNP 6342 to 6944 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:24,631 DEBUG Processing 24/222 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,736 DEBUG Processing 23/109 atomic regions from SNP 6644 to 7246 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:24,865 DEBUG Processing 25/222 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,984 DEBUG Processing 24/109 atomic regions from SNP 6946 to 7548 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:25,100 DEBUG Processing 26/222 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,239 DEBUG Processing 25/109 atomic regions from SNP 7248 to 7850 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:25,333 DEBUG Processing 27/222 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,477 DEBUG Processing 26/109 atomic regions from SNP 7550 to 8152 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:25,559 DEBUG Processing 28/222 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,717 DEBUG Processing 27/109 atomic regions from SNP 7852 to 8454 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:25,779 DEBUG Processing 29/222 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,960 DEBUG Processing 28/109 atomic regions from SNP 8154 to 8756 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:26,002 DEBUG Processing 30/222 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,202 DEBUG Processing 29/109 atomic regions from SNP 8456 to 9058 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:26,236 DEBUG Processing 31/222 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,452 DEBUG Processing 30/109 atomic regions from SNP 8758 to 9360 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:26,496 DEBUG Processing 32/222 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,711 DEBUG Processing 31/109 atomic regions from SNP 9060 to 9662 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:26,737 DEBUG Processing 33/222 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,965 DEBUG Processing 32/109 atomic regions from SNP 9362 to 9964 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:26,974 DEBUG Processing 34/222 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,208 DEBUG Processing 35/222 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,217 DEBUG Processing 33/109 atomic regions from SNP 9664 to 10266 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:27,434 DEBUG Processing 36/222 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,475 DEBUG Processing 34/109 atomic regions from SNP 9966 to 10568 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:27,654 DEBUG Processing 37/222 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,741 DEBUG Processing 35/109 atomic regions from SNP 10268 to 10870 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:27,883 DEBUG Processing 38/222 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,007 DEBUG Processing 36/109 atomic regions from SNP 10570 to 11172 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:28,119 DEBUG Processing 39/222 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,273 DEBUG Processing 37/109 atomic regions from SNP 10872 to 11474 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:28,346 DEBUG Processing 40/222 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,548 DEBUG Processing 38/109 atomic regions from SNP 11174 to 11776 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:28,572 DEBUG Processing 41/222 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,800 DEBUG Processing 42/222 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,830 DEBUG Processing 39/109 atomic regions from SNP 11476 to 12078 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:29,031 DEBUG Processing 43/222 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,114 DEBUG Processing 40/109 atomic regions from SNP 11778 to 12380 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:29,263 DEBUG Processing 44/222 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,394 DEBUG Processing 41/109 atomic regions from SNP 12080 to 12682 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:29,502 DEBUG Processing 45/222 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,673 DEBUG Processing 42/109 atomic regions from SNP 12382 to 12984 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:29,749 DEBUG Processing 46/222 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,945 DEBUG Processing 43/109 atomic regions from SNP 12684 to 13286 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:30,000 DEBUG Processing 47/222 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,216 DEBUG Processing 44/109 atomic regions from SNP 12986 to 13588 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:30,249 DEBUG Processing 48/222 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,478 DEBUG Processing 49/222 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,488 DEBUG Processing 45/109 atomic regions from SNP 13288 to 13890 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:30,707 DEBUG Processing 50/222 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,746 DEBUG Processing 46/109 atomic regions from SNP 13590 to 14192 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:30,943 DEBUG Processing 51/222 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,008 DEBUG Processing 47/109 atomic regions from SNP 13892 to 14494 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:31,178 DEBUG Processing 52/222 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,258 DEBUG Processing 48/109 atomic regions from SNP 14194 to 14796 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:31,412 DEBUG Processing 53/222 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,499 DEBUG Processing 49/109 atomic regions from SNP 14496 to 15098 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:31,641 DEBUG Processing 54/222 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,733 DEBUG Processing 50/109 atomic regions from SNP 14798 to 15400 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:31,867 DEBUG Processing 55/222 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,972 DEBUG Processing 51/109 atomic regions from SNP 15100 to 15702 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:32,092 DEBUG Processing 56/222 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,206 DEBUG Processing 52/109 atomic regions from SNP 15402 to 16004 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:32,322 DEBUG Processing 57/222 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,445 DEBUG Processing 53/109 atomic regions from SNP 15704 to 16306 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:32,549 DEBUG Processing 58/222 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,687 DEBUG Processing 54/109 atomic regions from SNP 16006 to 16608 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:32,774 DEBUG Processing 59/222 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,935 DEBUG Processing 55/109 atomic regions from SNP 16308 to 16910 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:32,998 DEBUG Processing 60/222 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,184 DEBUG Processing 56/109 atomic regions from SNP 16610 to 17212 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:33,225 DEBUG Processing 61/222 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,434 DEBUG Processing 57/109 atomic regions from SNP 16912 to 17514 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:33,467 DEBUG Processing 62/222 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,678 DEBUG Processing 58/109 atomic regions from SNP 17214 to 17816 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:33,688 DEBUG Processing 63/222 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,910 DEBUG Processing 64/222 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,917 DEBUG Processing 59/109 atomic regions from SNP 17516 to 18118 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:34,135 DEBUG Processing 65/222 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,153 DEBUG Processing 60/109 atomic regions from SNP 17818 to 18420 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:34,371 DEBUG Processing 66/222 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,396 DEBUG Processing 61/109 atomic regions from SNP 18120 to 18722 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:34,605 DEBUG Processing 67/222 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,647 DEBUG Processing 62/109 atomic regions from SNP 18422 to 19024 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:34,838 DEBUG Processing 68/222 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,901 DEBUG Processing 63/109 atomic regions from SNP 18724 to 19326 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:35,060 DEBUG Processing 69/222 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,152 DEBUG Processing 64/109 atomic regions from SNP 19026 to 19628 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:35,285 DEBUG Processing 70/222 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,401 DEBUG Processing 65/109 atomic regions from SNP 19328 to 19930 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:35,517 DEBUG Processing 71/222 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,646 DEBUG Processing 66/109 atomic regions from SNP 19630 to 20232 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:35,755 DEBUG Processing 72/222 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,890 DEBUG Processing 67/109 atomic regions from SNP 19932 to 20534 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:35,992 DEBUG Processing 73/222 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,135 DEBUG Processing 68/109 atomic regions from SNP 20234 to 20836 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:36,223 DEBUG Processing 74/222 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,381 DEBUG Processing 69/109 atomic regions from SNP 20536 to 21138 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:36,450 DEBUG Processing 75/222 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,634 DEBUG Processing 70/109 atomic regions from SNP 20838 to 21440 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:36,684 DEBUG Processing 76/222 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,895 DEBUG Processing 71/109 atomic regions from SNP 21140 to 21742 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:36,925 DEBUG Processing 77/222 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,142 DEBUG Processing 72/109 atomic regions from SNP 21442 to 22043 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:37,158 DEBUG Processing 78/222 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,381 DEBUG Processing 73/109 atomic regions from SNP 21743 to 22344 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:37,386 DEBUG Processing 79/222 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,612 DEBUG Processing 80/222 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,619 DEBUG Processing 74/109 atomic regions from SNP 22044 to 22645 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:37,834 DEBUG Processing 81/222 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,859 DEBUG Processing 75/109 atomic regions from SNP 22345 to 22946 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:38,056 DEBUG Processing 82/222 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,102 DEBUG Processing 76/109 atomic regions from SNP 22646 to 23247 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:38,283 DEBUG Processing 83/222 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,352 DEBUG Processing 77/109 atomic regions from SNP 22947 to 23548 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:38,507 DEBUG Processing 84/222 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,599 DEBUG Processing 78/109 atomic regions from SNP 23248 to 23849 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:38,731 DEBUG Processing 85/222 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,843 DEBUG Processing 79/109 atomic regions from SNP 23549 to 24150 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:38,963 DEBUG Processing 86/222 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,076 DEBUG Processing 80/109 atomic regions from SNP 23850 to 24451 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:39,126 DEBUG Segmenting atomic regions: 2025-01-31 09:44:39,201 DEBUG Processing 87/222 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,240 DEBUG Processing 1/871 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,303 DEBUG Processing 81/109 atomic regions from SNP 24151 to 24752 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:39,444 DEBUG Processing 88/222 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,537 DEBUG Processing 82/109 atomic regions from SNP 24452 to 25053 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:39,679 DEBUG Processing 89/222 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,777 DEBUG Processing 83/109 atomic regions from SNP 24753 to 25354 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:39,906 DEBUG Processing 90/222 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,017 DEBUG Processing 2/871 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,024 DEBUG Processing 84/109 atomic regions from SNP 25054 to 25655 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:40,133 DEBUG Processing 91/222 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,254 DEBUG Processing 3/871 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,272 DEBUG Processing 85/109 atomic regions from SNP 25355 to 25956 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:40,364 DEBUG Processing 92/222 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,503 DEBUG Processing 4/871 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,522 DEBUG Processing 86/109 atomic regions from SNP 25656 to 26257 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:40,602 DEBUG Processing 93/222 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,733 DEBUG Processing 5/871 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,765 DEBUG Processing 87/109 atomic regions from SNP 25957 to 26558 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:40,837 DEBUG Processing 94/222 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,967 DEBUG Processing 6/871 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,023 DEBUG Processing 88/109 atomic regions from SNP 26258 to 26859 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:41,063 DEBUG Processing 95/222 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,208 DEBUG Processing 7/871 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,278 DEBUG Processing 89/109 atomic regions from SNP 26559 to 27160 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:41,288 DEBUG Processing 96/222 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,451 DEBUG Processing 8/871 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,516 DEBUG Processing 97/222 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,524 DEBUG Processing 90/109 atomic regions from SNP 26860 to 27461 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:41,689 DEBUG Processing 9/871 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,749 DEBUG Processing 98/222 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,762 DEBUG Processing 91/109 atomic regions from SNP 27161 to 27762 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:41,927 DEBUG Processing 10/871 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,983 DEBUG Processing 99/222 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,004 DEBUG Processing 92/109 atomic regions from SNP 27462 to 28063 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:42,163 DEBUG Processing 11/871 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,219 DEBUG Processing 100/222 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,247 DEBUG Processing 93/109 atomic regions from SNP 27763 to 28364 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:42,409 DEBUG Processing 12/871 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,462 DEBUG Processing 101/222 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,489 DEBUG Processing 94/109 atomic regions from SNP 28064 to 28665 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:42,643 DEBUG Processing 13/871 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,695 DEBUG Processing 102/222 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,726 DEBUG Processing 95/109 atomic regions from SNP 28365 to 28966 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:42,876 DEBUG Processing 14/871 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,924 DEBUG Processing 103/222 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,961 DEBUG Processing 96/109 atomic regions from SNP 28666 to 29267 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:43,104 DEBUG Processing 15/871 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,148 DEBUG Processing 104/222 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,199 DEBUG Processing 97/109 atomic regions from SNP 28967 to 29568 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:43,337 DEBUG Processing 16/871 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,376 DEBUG Processing 105/222 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,399 DEBUG Segmenting atomic regions: 2025-01-31 09:44:43,438 DEBUG Processing 98/109 atomic regions from SNP 29268 to 29869 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:43,520 DEBUG Processing 1/918 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,576 DEBUG Processing 17/871 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,610 DEBUG Processing 106/222 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,674 DEBUG Processing 99/109 atomic regions from SNP 29569 to 30170 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:43,816 DEBUG Processing 18/871 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,854 DEBUG Processing 107/222 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,916 DEBUG Processing 100/109 atomic regions from SNP 29870 to 30471 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:44,059 DEBUG Processing 19/871 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,101 DEBUG Processing 108/222 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,160 DEBUG Processing 101/109 atomic regions from SNP 30171 to 30772 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:44,297 DEBUG Processing 20/871 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,314 DEBUG Processing 2/918 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,337 DEBUG Processing 109/222 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,402 DEBUG Processing 102/109 atomic regions from SNP 30472 to 31073 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:44,538 DEBUG Processing 21/871 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,564 DEBUG Processing 3/918 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,575 DEBUG Processing 110/222 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,642 DEBUG Processing 103/109 atomic regions from SNP 30773 to 31374 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:44,782 DEBUG Processing 22/871 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,814 DEBUG Processing 111/222 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,816 DEBUG Processing 4/918 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,888 DEBUG Processing 104/109 atomic regions from SNP 31074 to 31675 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:45,028 DEBUG Processing 23/871 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,064 DEBUG Processing 112/222 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,077 DEBUG Processing 5/918 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,127 DEBUG Processing 105/109 atomic regions from SNP 31375 to 31976 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:45,286 DEBUG Processing 24/871 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,317 DEBUG Processing 113/222 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,344 DEBUG Processing 6/918 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,372 DEBUG Processing 106/109 atomic regions from SNP 31676 to 32277 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:45,524 DEBUG Processing 25/871 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,557 DEBUG Processing 114/222 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,603 DEBUG Processing 7/918 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,611 DEBUG Processing 107/109 atomic regions from SNP 31977 to 32578 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:45,755 DEBUG Processing 26/871 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,791 DEBUG Processing 115/222 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,851 DEBUG Processing 108/109 atomic regions from SNP 32278 to 32879 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:45,857 DEBUG Processing 8/918 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,990 DEBUG Processing 27/871 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,029 DEBUG Processing 116/222 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,090 DEBUG Processing 109/109 atomic regions from SNP 32579 to 33180 for chrX (subchromosome 1 of 4). 2025-01-31 09:44:46,111 DEBUG Processing 9/918 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,221 DEBUG Unique SNPs positions in subchromosome 1: 33181 2025-01-31 09:44:46,229 DEBUG Processing 28/871 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,259 DEBUG Subchromosome time: 32.095878942054696, subchromosome SNPs: 33181 2025-01-31 09:44:46,266 DEBUG Processing 117/222 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,296 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:46,356 DEBUG Processing 10/918 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,482 DEBUG Processing 29/871 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,512 DEBUG Processing 118/222 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,596 DEBUG Processing 11/918 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,729 DEBUG Processing 30/871 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,757 DEBUG Processing 119/222 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,842 DEBUG Processing 12/918 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,973 DEBUG Processing 31/871 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,002 DEBUG Processing 120/222 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,096 DEBUG Processing 13/918 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,216 DEBUG Processing 32/871 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,243 DEBUG Processing 121/222 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,348 DEBUG Processing 14/918 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,449 DEBUG Processing 33/871 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,473 DEBUG Processing 122/222 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,588 DEBUG Processing 15/918 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,682 DEBUG Processing 34/871 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,701 DEBUG Processing 123/222 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,826 DEBUG Processing 16/918 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,927 DEBUG Processing 35/871 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,941 DEBUG Processing 124/222 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,061 DEBUG Processing 17/918 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,173 DEBUG Processing 36/871 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,183 DEBUG Processing 125/222 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,306 DEBUG Processing 18/918 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,424 DEBUG Processing 37/871 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,430 DEBUG Processing 126/222 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,550 DEBUG Processing 19/918 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,653 DEBUG Processing 38/871 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,659 DEBUG Processing 127/222 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,799 DEBUG Processing 20/918 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,884 DEBUG Processing 39/871 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,887 DEBUG Processing 128/222 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,052 DEBUG Processing 21/918 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,123 DEBUG Processing 129/222 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,123 DEBUG Processing 40/871 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,297 DEBUG Processing 22/918 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,362 DEBUG Processing 130/222 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,365 DEBUG Processing 41/871 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,537 DEBUG Processing 23/918 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,600 DEBUG Processing 131/222 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,606 DEBUG Processing 42/871 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,775 DEBUG Processing 24/918 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,831 DEBUG Processing 132/222 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,841 DEBUG Processing 43/871 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,012 DEBUG Processing 25/918 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,056 DEBUG Processing 133/222 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,069 DEBUG Processing 44/871 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,255 DEBUG Processing 26/918 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,284 DEBUG Processing 134/222 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,295 DEBUG Processing 45/871 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,506 DEBUG Processing 27/918 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,519 DEBUG Processing 135/222 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,531 DEBUG Processing 46/871 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,754 DEBUG Processing 28/918 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,755 DEBUG Processing 136/222 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,768 DEBUG Processing 47/871 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,991 DEBUG Processing 137/222 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:51,003 DEBUG Processing 29/918 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,010 DEBUG Processing 48/871 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,232 DEBUG Processing 138/222 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:51,256 DEBUG Processing 49/871 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,260 DEBUG Processing 30/918 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,474 DEBUG Processing 139/222 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:51,504 DEBUG Processing 50/871 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,518 DEBUG Processing 31/918 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,709 DEBUG Processing 140/222 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:51,745 DEBUG Processing 51/871 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,770 DEBUG Processing 32/918 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,935 DEBUG Processing 141/222 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:51,980 DEBUG Processing 52/871 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,016 DEBUG Processing 33/918 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,170 DEBUG Processing 142/222 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:52,217 DEBUG Processing 53/871 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,280 DEBUG Processing 34/918 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,407 DEBUG Processing 143/222 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:52,456 DEBUG Processing 54/871 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,526 DEBUG Processing 35/918 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,647 DEBUG Processing 144/222 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:52,694 DEBUG Processing 55/871 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,763 DEBUG Processing 36/918 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,788 DEBUG Segmenting atomic regions: 2025-01-31 09:44:52,883 DEBUG Processing 145/222 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:52,930 DEBUG Processing 1/1038 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,936 DEBUG Processing 56/871 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,006 DEBUG Processing 37/918 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,122 DEBUG Processing 146/222 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:53,179 DEBUG Processing 57/871 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,274 DEBUG Processing 38/918 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,359 DEBUG Processing 147/222 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:53,416 DEBUG Processing 58/871 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,543 DEBUG Processing 39/918 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,593 DEBUG Processing 148/222 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:53,648 DEBUG Processing 59/871 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,739 DEBUG Processing 2/1038 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,794 DEBUG Processing 40/918 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,830 DEBUG Processing 149/222 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:53,881 DEBUG Processing 60/871 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,020 DEBUG Processing 3/1038 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,058 DEBUG Processing 41/918 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,078 DEBUG Processing 150/222 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:54,124 DEBUG Processing 61/871 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,292 DEBUG Processing 4/1038 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,323 DEBUG Processing 42/918 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,325 DEBUG Processing 151/222 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:54,376 DEBUG Processing 62/871 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,565 DEBUG Processing 5/1038 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,567 DEBUG Processing 152/222 atomic regions from SNP 45451 to 46052 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:54,581 DEBUG Processing 43/918 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,617 DEBUG Processing 63/871 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,803 DEBUG Processing 153/222 atomic regions from SNP 45752 to 46353 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:54,827 DEBUG Processing 44/918 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,837 DEBUG Processing 6/1038 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,854 DEBUG Processing 64/871 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,036 DEBUG Processing 154/222 atomic regions from SNP 46053 to 46654 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:55,070 DEBUG Processing 45/918 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,092 DEBUG Processing 65/871 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,103 DEBUG Processing 7/1038 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,272 DEBUG Processing 155/222 atomic regions from SNP 46354 to 46955 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:55,320 DEBUG Processing 46/918 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,333 DEBUG Processing 66/871 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,374 DEBUG Processing 8/1038 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,508 DEBUG Processing 156/222 atomic regions from SNP 46655 to 47256 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:55,574 DEBUG Processing 47/918 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,578 DEBUG Processing 67/871 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,655 DEBUG Processing 9/1038 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,740 DEBUG Processing 157/222 atomic regions from SNP 46956 to 47557 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:55,823 DEBUG Processing 68/871 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,826 DEBUG Processing 48/918 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,949 DEBUG Processing 10/1038 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,970 DEBUG Processing 158/222 atomic regions from SNP 47257 to 47858 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:56,071 DEBUG Processing 69/871 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,083 DEBUG Processing 49/918 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,203 DEBUG Processing 159/222 atomic regions from SNP 47558 to 48159 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:56,228 DEBUG Processing 11/1038 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,315 DEBUG Processing 70/871 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,337 DEBUG Processing 50/918 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,437 DEBUG Processing 160/222 atomic regions from SNP 47859 to 48460 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:56,510 DEBUG Processing 12/1038 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,555 DEBUG Processing 71/871 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,582 DEBUG Processing 51/918 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,663 DEBUG Processing 161/222 atomic regions from SNP 48160 to 48761 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:56,790 DEBUG Processing 13/1038 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,792 DEBUG Processing 72/871 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,824 DEBUG Processing 52/918 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,890 DEBUG Processing 162/222 atomic regions from SNP 48461 to 49062 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:57,033 DEBUG Processing 73/871 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,062 DEBUG Processing 14/1038 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,066 DEBUG Processing 53/918 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,116 DEBUG Processing 163/222 atomic regions from SNP 48762 to 49363 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:57,274 DEBUG Processing 74/871 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,317 DEBUG Processing 54/918 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,341 DEBUG Processing 15/1038 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,351 DEBUG Processing 164/222 atomic regions from SNP 49063 to 49664 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:57,512 DEBUG Processing 75/871 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,564 DEBUG Processing 55/918 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,590 DEBUG Processing 165/222 atomic regions from SNP 49364 to 49965 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:57,619 DEBUG Processing 16/1038 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,742 DEBUG Processing 76/871 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,805 DEBUG Processing 56/918 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,825 DEBUG Processing 166/222 atomic regions from SNP 49665 to 50266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:57,898 DEBUG Processing 17/1038 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,974 DEBUG Processing 77/871 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,039 DEBUG Processing 57/918 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,054 DEBUG Processing 167/222 atomic regions from SNP 49966 to 50567 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:58,180 DEBUG Processing 18/1038 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,209 DEBUG Processing 78/871 atomic regions from SNP 23177 to 23778 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,275 DEBUG Processing 58/918 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,284 DEBUG Processing 168/222 atomic regions from SNP 50267 to 50868 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:58,452 DEBUG Processing 79/871 atomic regions from SNP 23478 to 24079 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,480 DEBUG Processing 19/1038 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,529 DEBUG Processing 169/222 atomic regions from SNP 50568 to 51169 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:58,529 DEBUG Processing 59/918 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,681 DEBUG Processing 80/871 atomic regions from SNP 23779 to 24380 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,691 DEBUG Segmenting atomic regions: 2025-01-31 09:44:58,769 DEBUG Processing 20/1038 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,774 DEBUG Processing 170/222 atomic regions from SNP 50869 to 51470 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:58,781 DEBUG Processing 60/918 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,838 DEBUG Processing 1/1146 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,910 DEBUG Processing 81/871 atomic regions from SNP 24080 to 24681 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,037 DEBUG Processing 171/222 atomic regions from SNP 51170 to 51771 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:59,039 DEBUG Processing 61/918 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,071 DEBUG Processing 21/1038 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,151 DEBUG Processing 82/871 atomic regions from SNP 24381 to 24982 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,285 DEBUG Processing 62/918 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,290 DEBUG Processing 172/222 atomic regions from SNP 51471 to 52072 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:59,368 DEBUG Processing 22/1038 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,393 DEBUG Processing 83/871 atomic regions from SNP 24682 to 25283 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,530 DEBUG Processing 63/918 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,546 DEBUG Processing 173/222 atomic regions from SNP 51772 to 52373 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:59,632 DEBUG Processing 84/871 atomic regions from SNP 24983 to 25584 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,646 DEBUG Processing 23/1038 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,694 DEBUG Processing 2/1146 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,771 DEBUG Processing 64/918 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,804 DEBUG Processing 174/222 atomic regions from SNP 52073 to 52674 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:59,875 DEBUG Processing 85/871 atomic regions from SNP 25284 to 25885 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,919 DEBUG Processing 24/1038 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,981 DEBUG Processing 3/1146 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,014 DEBUG Processing 65/918 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,043 DEBUG Processing 175/222 atomic regions from SNP 52374 to 52975 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:00,120 DEBUG Processing 86/871 atomic regions from SNP 25585 to 26186 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,188 DEBUG Processing 25/1038 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,257 DEBUG Processing 66/918 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,266 DEBUG Processing 4/1146 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,280 DEBUG Processing 176/222 atomic regions from SNP 52675 to 53276 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:00,357 DEBUG Processing 87/871 atomic regions from SNP 25886 to 26487 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,471 DEBUG Processing 26/1038 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,502 DEBUG Processing 67/918 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,513 DEBUG Processing 177/222 atomic regions from SNP 52976 to 53577 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:00,542 DEBUG Processing 5/1146 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,587 DEBUG Processing 88/871 atomic regions from SNP 26187 to 26788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,742 DEBUG Processing 27/1038 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,753 DEBUG Processing 178/222 atomic regions from SNP 53277 to 53878 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:00,755 DEBUG Processing 68/918 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,824 DEBUG Processing 89/871 atomic regions from SNP 26488 to 27089 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,831 DEBUG Processing 6/1146 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,993 DEBUG Processing 179/222 atomic regions from SNP 53578 to 54179 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:01,005 DEBUG Processing 69/918 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,014 DEBUG Processing 28/1038 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,065 DEBUG Processing 90/871 atomic regions from SNP 26789 to 27390 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,119 DEBUG Processing 7/1146 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,225 DEBUG Processing 180/222 atomic regions from SNP 53879 to 54480 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:01,248 DEBUG Processing 70/918 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,279 DEBUG Processing 29/1038 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,310 DEBUG Processing 91/871 atomic regions from SNP 27090 to 27691 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,408 DEBUG Processing 8/1146 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,455 DEBUG Processing 181/222 atomic regions from SNP 54180 to 54781 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:01,490 DEBUG Processing 71/918 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,545 DEBUG Processing 30/1038 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,551 DEBUG Processing 92/871 atomic regions from SNP 27391 to 27992 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,691 DEBUG Processing 182/222 atomic regions from SNP 54481 to 55082 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:01,698 DEBUG Processing 9/1146 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,732 DEBUG Processing 72/918 atomic regions from SNP 21371 to 21972 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,792 DEBUG Processing 93/871 atomic regions from SNP 27692 to 28293 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,812 DEBUG Processing 31/1038 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,936 DEBUG Processing 183/222 atomic regions from SNP 54782 to 55383 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:01,975 DEBUG Processing 73/918 atomic regions from SNP 21672 to 22273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,984 DEBUG Processing 10/1146 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,040 DEBUG Processing 94/871 atomic regions from SNP 27993 to 28594 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,083 DEBUG Processing 32/1038 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,176 DEBUG Processing 184/222 atomic regions from SNP 55083 to 55684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:02,219 DEBUG Processing 74/918 atomic regions from SNP 21973 to 22574 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,263 DEBUG Processing 11/1146 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,303 DEBUG Processing 95/871 atomic regions from SNP 28294 to 28895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,350 DEBUG Processing 33/1038 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,410 DEBUG Processing 185/222 atomic regions from SNP 55384 to 55985 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:02,466 DEBUG Processing 75/918 atomic regions from SNP 22274 to 22875 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,540 DEBUG Processing 12/1146 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,552 DEBUG Processing 96/871 atomic regions from SNP 28595 to 29196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,609 DEBUG Processing 34/1038 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,640 DEBUG Processing 186/222 atomic regions from SNP 55685 to 56286 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:02,715 DEBUG Processing 76/918 atomic regions from SNP 22575 to 23176 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,789 DEBUG Processing 97/871 atomic regions from SNP 28896 to 29497 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,810 DEBUG Processing 13/1146 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,869 DEBUG Processing 35/1038 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,872 DEBUG Processing 187/222 atomic regions from SNP 55986 to 56587 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:02,961 DEBUG Processing 77/918 atomic regions from SNP 22876 to 23477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,031 DEBUG Processing 98/871 atomic regions from SNP 29197 to 29798 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,080 DEBUG Processing 14/1146 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,112 DEBUG Processing 188/222 atomic regions from SNP 56287 to 56888 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:03,139 DEBUG Processing 36/1038 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,207 DEBUG Processing 78/918 atomic regions from SNP 23177 to 23778 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,284 DEBUG Processing 99/871 atomic regions from SNP 29498 to 30099 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,348 DEBUG Processing 15/1146 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,359 DEBUG Processing 189/222 atomic regions from SNP 56588 to 57189 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:03,426 DEBUG Processing 37/1038 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,453 DEBUG Processing 79/918 atomic regions from SNP 23478 to 24079 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,534 DEBUG Processing 100/871 atomic regions from SNP 29799 to 30400 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,606 DEBUG Processing 190/222 atomic regions from SNP 56889 to 57490 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:03,632 DEBUG Processing 16/1146 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,696 DEBUG Processing 38/1038 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,699 DEBUG Processing 80/918 atomic regions from SNP 23779 to 24380 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,779 DEBUG Processing 101/871 atomic regions from SNP 30100 to 30701 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,853 DEBUG Processing 191/222 atomic regions from SNP 57190 to 57791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:03,917 DEBUG Processing 17/1146 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,943 DEBUG Processing 81/918 atomic regions from SNP 24080 to 24681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,960 DEBUG Processing 39/1038 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,019 DEBUG Processing 102/871 atomic regions from SNP 30401 to 31002 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,056 DEBUG Segmenting atomic regions: 2025-01-31 09:45:04,087 DEBUG Processing 192/222 atomic regions from SNP 57491 to 58092 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:04,165 DEBUG Processing 1/480 atomic regions from SNP 0 to 601 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:04,191 DEBUG Processing 82/918 atomic regions from SNP 24381 to 24982 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,201 DEBUG Processing 18/1146 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,226 DEBUG Processing 40/1038 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,276 DEBUG Processing 103/871 atomic regions from SNP 30702 to 31303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,320 DEBUG Processing 193/222 atomic regions from SNP 57792 to 58393 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:04,419 DEBUG Processing 2/480 atomic regions from SNP 301 to 902 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:04,436 DEBUG Processing 83/918 atomic regions from SNP 24682 to 25283 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,486 DEBUG Processing 19/1146 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,506 DEBUG Processing 41/1038 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,538 DEBUG Processing 104/871 atomic regions from SNP 31003 to 31604 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,560 DEBUG Processing 194/222 atomic regions from SNP 58093 to 58694 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:04,655 DEBUG Processing 3/480 atomic regions from SNP 602 to 1203 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:04,678 DEBUG Processing 84/918 atomic regions from SNP 24983 to 25584 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,772 DEBUG Processing 20/1146 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,787 DEBUG Processing 42/1038 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,792 DEBUG Processing 105/871 atomic regions from SNP 31304 to 31905 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,807 DEBUG Processing 195/222 atomic regions from SNP 58394 to 58995 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:04,892 DEBUG Processing 4/480 atomic regions from SNP 903 to 1504 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:04,915 DEBUG Processing 85/918 atomic regions from SNP 25284 to 25885 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,045 DEBUG Processing 106/871 atomic regions from SNP 31605 to 32206 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,051 DEBUG Processing 21/1146 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,056 DEBUG Processing 196/222 atomic regions from SNP 58695 to 59296 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:05,069 DEBUG Processing 43/1038 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,135 DEBUG Processing 5/480 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:05,154 DEBUG Processing 86/918 atomic regions from SNP 25585 to 26186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,291 DEBUG Processing 107/871 atomic regions from SNP 31906 to 32507 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,298 DEBUG Processing 197/222 atomic regions from SNP 58996 to 59597 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:05,324 DEBUG Processing 22/1146 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,344 DEBUG Processing 44/1038 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,383 DEBUG Processing 6/480 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:05,401 DEBUG Processing 87/918 atomic regions from SNP 25886 to 26487 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,530 DEBUG Processing 108/871 atomic regions from SNP 32207 to 32808 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,534 DEBUG Processing 198/222 atomic regions from SNP 59297 to 59898 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:05,598 DEBUG Processing 23/1146 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,625 DEBUG Processing 45/1038 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,635 DEBUG Processing 7/480 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:05,656 DEBUG Processing 88/918 atomic regions from SNP 26187 to 26788 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,765 DEBUG Processing 109/871 atomic regions from SNP 32508 to 33109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,767 DEBUG Processing 199/222 atomic regions from SNP 59598 to 60199 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:05,875 DEBUG Processing 24/1146 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,892 DEBUG Processing 8/480 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:05,900 DEBUG Processing 46/1038 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,911 DEBUG Processing 89/918 atomic regions from SNP 26488 to 27089 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,002 DEBUG Processing 200/222 atomic regions from SNP 59899 to 60500 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:06,018 DEBUG Processing 110/871 atomic regions from SNP 32809 to 33410 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,144 DEBUG Processing 9/480 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:06,151 DEBUG Processing 25/1146 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,167 DEBUG Processing 47/1038 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,170 DEBUG Processing 90/918 atomic regions from SNP 26789 to 27390 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,240 DEBUG Processing 201/222 atomic regions from SNP 60200 to 60801 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:06,258 DEBUG Processing 111/871 atomic regions from SNP 33110 to 33711 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,412 DEBUG Processing 10/480 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:06,433 DEBUG Processing 26/1146 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,435 DEBUG Processing 48/1038 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,440 DEBUG Processing 91/918 atomic regions from SNP 27090 to 27691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,486 DEBUG Processing 202/222 atomic regions from SNP 60501 to 61102 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:06,513 DEBUG Processing 112/871 atomic regions from SNP 33411 to 34012 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,681 DEBUG Processing 11/480 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:06,694 DEBUG Processing 92/918 atomic regions from SNP 27391 to 27992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,710 DEBUG Processing 49/1038 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,728 DEBUG Processing 27/1146 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,737 DEBUG Processing 203/222 atomic regions from SNP 60802 to 61403 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:06,769 DEBUG Processing 113/871 atomic regions from SNP 33712 to 34313 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,942 DEBUG Processing 12/480 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:06,949 DEBUG Processing 93/918 atomic regions from SNP 27692 to 28293 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,978 DEBUG Processing 50/1038 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,982 DEBUG Processing 204/222 atomic regions from SNP 61103 to 61704 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:07,016 DEBUG Processing 28/1146 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,021 DEBUG Processing 114/871 atomic regions from SNP 34013 to 34614 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,196 DEBUG Processing 13/480 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:07,199 DEBUG Processing 94/918 atomic regions from SNP 27993 to 28594 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,220 DEBUG Processing 205/222 atomic regions from SNP 61404 to 62005 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:07,249 DEBUG Processing 51/1038 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,288 DEBUG Processing 115/871 atomic regions from SNP 34314 to 34915 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,304 DEBUG Processing 29/1146 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,438 DEBUG Processing 95/918 atomic regions from SNP 28294 to 28895 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,452 DEBUG Processing 206/222 atomic regions from SNP 61705 to 62306 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:07,454 DEBUG Processing 14/480 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:07,537 DEBUG Processing 52/1038 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,572 DEBUG Processing 116/871 atomic regions from SNP 34615 to 35216 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,607 DEBUG Processing 30/1146 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,681 DEBUG Processing 96/918 atomic regions from SNP 28595 to 29196 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,685 DEBUG Processing 207/222 atomic regions from SNP 62006 to 62607 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:07,705 DEBUG Processing 15/480 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:07,810 DEBUG Processing 53/1038 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,840 DEBUG Processing 117/871 atomic regions from SNP 34916 to 35517 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,907 DEBUG Processing 31/1146 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,923 DEBUG Processing 208/222 atomic regions from SNP 62307 to 62908 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:07,930 DEBUG Processing 97/918 atomic regions from SNP 28896 to 29497 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,955 DEBUG Processing 16/480 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:08,094 DEBUG Processing 54/1038 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,109 DEBUG Processing 118/871 atomic regions from SNP 35217 to 35818 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,165 DEBUG Processing 209/222 atomic regions from SNP 62608 to 63209 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:08,179 DEBUG Processing 98/918 atomic regions from SNP 29197 to 29798 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,202 DEBUG Processing 32/1146 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,205 DEBUG Processing 17/480 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:08,354 DEBUG Processing 55/1038 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,381 DEBUG Processing 119/871 atomic regions from SNP 35518 to 36119 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,405 DEBUG Processing 210/222 atomic regions from SNP 62909 to 63510 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:08,430 DEBUG Processing 99/918 atomic regions from SNP 29498 to 30099 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,468 DEBUG Processing 18/480 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:08,490 DEBUG Processing 33/1146 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,614 DEBUG Processing 56/1038 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,643 DEBUG Processing 211/222 atomic regions from SNP 63210 to 63811 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:08,648 DEBUG Processing 120/871 atomic regions from SNP 35819 to 36420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,680 DEBUG Processing 100/918 atomic regions from SNP 29799 to 30400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,721 DEBUG Processing 19/480 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:08,783 DEBUG Processing 34/1146 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,875 DEBUG Processing 57/1038 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,875 DEBUG Processing 212/222 atomic regions from SNP 63511 to 64112 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:08,887 DEBUG Processing 121/871 atomic regions from SNP 36120 to 36721 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,924 DEBUG Processing 101/918 atomic regions from SNP 30100 to 30701 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,969 DEBUG Processing 20/480 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:09,077 DEBUG Processing 35/1146 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,105 DEBUG Processing 213/222 atomic regions from SNP 63812 to 64412 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:09,120 DEBUG Processing 122/871 atomic regions from SNP 36421 to 37022 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,133 DEBUG Processing 58/1038 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,160 DEBUG Processing 102/918 atomic regions from SNP 30401 to 31002 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,205 DEBUG Processing 21/480 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:09,348 DEBUG Processing 214/222 atomic regions from SNP 64112 to 64712 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:09,367 DEBUG Processing 36/1146 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,379 DEBUG Processing 123/871 atomic regions from SNP 36722 to 37323 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,388 DEBUG Processing 59/1038 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,396 DEBUG Processing 103/918 atomic regions from SNP 30702 to 31303 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,440 DEBUG Processing 22/480 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:09,603 DEBUG Processing 215/222 atomic regions from SNP 64412 to 65012 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:09,629 DEBUG Processing 124/871 atomic regions from SNP 37023 to 37624 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,643 DEBUG Processing 104/918 atomic regions from SNP 31003 to 31604 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,655 DEBUG Processing 60/1038 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,664 DEBUG Processing 37/1146 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,678 DEBUG Processing 23/480 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:09,840 DEBUG Processing 216/222 atomic regions from SNP 64712 to 65312 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:09,879 DEBUG Processing 125/871 atomic regions from SNP 37324 to 37925 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,897 DEBUG Processing 105/918 atomic regions from SNP 31304 to 31905 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,925 DEBUG Processing 24/480 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:09,927 DEBUG Processing 61/1038 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,963 DEBUG Processing 38/1146 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,087 DEBUG Processing 217/222 atomic regions from SNP 65012 to 65612 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:10,123 DEBUG Processing 126/871 atomic regions from SNP 37625 to 38226 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,150 DEBUG Processing 106/918 atomic regions from SNP 31605 to 32206 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,171 DEBUG Processing 25/480 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:10,195 DEBUG Processing 62/1038 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,259 DEBUG Processing 39/1146 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,348 DEBUG Processing 218/222 atomic regions from SNP 65312 to 65912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:10,362 DEBUG Processing 127/871 atomic regions from SNP 37926 to 38527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,402 DEBUG Processing 107/918 atomic regions from SNP 31906 to 32507 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,411 DEBUG Processing 26/480 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:10,459 DEBUG Processing 63/1038 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,556 DEBUG Processing 40/1146 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,593 DEBUG Processing 128/871 atomic regions from SNP 38227 to 38828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,611 DEBUG Processing 219/222 atomic regions from SNP 65612 to 66212 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:10,644 DEBUG Processing 108/918 atomic regions from SNP 32207 to 32808 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,647 DEBUG Processing 27/480 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:10,721 DEBUG Processing 64/1038 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,825 DEBUG Processing 129/871 atomic regions from SNP 38528 to 39129 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,847 DEBUG Processing 41/1146 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,866 DEBUG Processing 220/222 atomic regions from SNP 65912 to 66512 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:10,886 DEBUG Processing 109/918 atomic regions from SNP 32508 to 33109 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,892 DEBUG Processing 28/480 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:10,983 DEBUG Processing 65/1038 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,055 DEBUG Processing 130/871 atomic regions from SNP 38829 to 39430 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,108 DEBUG Processing 221/222 atomic regions from SNP 66212 to 66812 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:11,128 DEBUG Processing 110/918 atomic regions from SNP 32809 to 33410 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,141 DEBUG Processing 42/1146 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,148 DEBUG Processing 29/480 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:11,247 DEBUG Processing 66/1038 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,289 DEBUG Processing 131/871 atomic regions from SNP 39130 to 39731 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,357 DEBUG Processing 222/222 atomic regions from SNP 66512 to 67112 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:11,365 DEBUG Processing 111/918 atomic regions from SNP 33110 to 33711 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,406 DEBUG Processing 30/480 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:11,443 DEBUG Processing 43/1146 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,498 DEBUG Unique SNPs positions in subchromosome 1: 67113 2025-01-31 09:45:11,513 DEBUG Processing 67/1038 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,526 DEBUG Processing 132/871 atomic regions from SNP 39431 to 40032 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,601 DEBUG Processing 112/918 atomic regions from SNP 33411 to 34012 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,648 DEBUG Processing 31/480 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:11,663 DEBUG Subchromosome time: 62.10546126193367, subchromosome SNPs: 67113 2025-01-31 09:45:11,712 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:11,730 DEBUG Processing 44/1146 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,763 DEBUG Processing 133/871 atomic regions from SNP 39732 to 40333 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,778 DEBUG Processing 68/1038 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,840 DEBUG Processing 113/918 atomic regions from SNP 33712 to 34313 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,879 DEBUG Processing 32/480 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:11,998 DEBUG Processing 134/871 atomic regions from SNP 40033 to 40634 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,017 DEBUG Processing 45/1146 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,047 DEBUG Processing 69/1038 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,089 DEBUG Processing 114/918 atomic regions from SNP 34013 to 34614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,114 DEBUG Processing 33/480 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:12,241 DEBUG Processing 135/871 atomic regions from SNP 40334 to 40935 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,319 DEBUG Processing 46/1146 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,321 DEBUG Processing 70/1038 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,336 DEBUG Processing 115/918 atomic regions from SNP 34314 to 34915 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,354 DEBUG Processing 34/480 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:12,485 DEBUG Processing 136/871 atomic regions from SNP 40635 to 41236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,577 DEBUG Processing 116/918 atomic regions from SNP 34615 to 35216 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,582 DEBUG Processing 71/1038 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,602 DEBUG Processing 35/480 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:12,611 DEBUG Processing 47/1146 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,731 DEBUG Processing 137/871 atomic regions from SNP 40936 to 41537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,820 DEBUG Processing 117/918 atomic regions from SNP 34916 to 35517 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,846 DEBUG Processing 72/1038 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,859 DEBUG Processing 36/480 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:12,910 DEBUG Processing 48/1146 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,978 DEBUG Processing 138/871 atomic regions from SNP 41237 to 41838 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,058 DEBUG Processing 118/918 atomic regions from SNP 35217 to 35818 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,107 DEBUG Processing 73/1038 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,117 DEBUG Processing 37/480 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:13,192 DEBUG Processing 49/1146 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,214 DEBUG Processing 139/871 atomic regions from SNP 41538 to 42139 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,297 DEBUG Processing 119/918 atomic regions from SNP 35518 to 36119 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,359 DEBUG Processing 38/480 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:13,363 DEBUG Processing 74/1038 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,445 DEBUG Processing 140/871 atomic regions from SNP 41839 to 42440 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,472 DEBUG Processing 50/1146 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,538 DEBUG Processing 120/918 atomic regions from SNP 35819 to 36420 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,593 DEBUG Processing 39/480 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:13,619 DEBUG Processing 75/1038 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,676 DEBUG Processing 141/871 atomic regions from SNP 42140 to 42741 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,750 DEBUG Processing 51/1146 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,775 DEBUG Processing 121/918 atomic regions from SNP 36120 to 36721 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,826 DEBUG Processing 40/480 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:13,876 DEBUG Processing 76/1038 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,906 DEBUG Processing 142/871 atomic regions from SNP 42441 to 43042 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,014 DEBUG Processing 122/918 atomic regions from SNP 36421 to 37022 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,036 DEBUG Processing 52/1146 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,064 DEBUG Processing 41/480 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:14,133 DEBUG Processing 77/1038 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,136 DEBUG Processing 143/871 atomic regions from SNP 42742 to 43343 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,248 DEBUG Processing 123/918 atomic regions from SNP 36722 to 37323 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,302 DEBUG Processing 42/480 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:14,320 DEBUG Processing 53/1146 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,372 DEBUG Processing 144/871 atomic regions from SNP 43043 to 43644 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,395 DEBUG Processing 78/1038 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,483 DEBUG Processing 124/918 atomic regions from SNP 37023 to 37624 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,538 DEBUG Processing 43/480 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:14,603 DEBUG Processing 54/1146 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,607 DEBUG Processing 145/871 atomic regions from SNP 43344 to 43945 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,653 DEBUG Processing 79/1038 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,717 DEBUG Processing 125/918 atomic regions from SNP 37324 to 37925 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,775 DEBUG Processing 44/480 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:14,841 DEBUG Processing 146/871 atomic regions from SNP 43645 to 44246 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,880 DEBUG Processing 55/1146 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,909 DEBUG Processing 80/1038 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,957 DEBUG Processing 126/918 atomic regions from SNP 37625 to 38226 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,016 DEBUG Processing 45/480 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:15,066 DEBUG Processing 147/871 atomic regions from SNP 43946 to 44547 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,154 DEBUG Processing 56/1146 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,168 DEBUG Processing 81/1038 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,202 DEBUG Processing 127/918 atomic regions from SNP 37926 to 38527 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,260 DEBUG Processing 46/480 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:15,293 DEBUG Processing 148/871 atomic regions from SNP 44247 to 44848 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,425 DEBUG Processing 57/1146 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,431 DEBUG Processing 82/1038 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,449 DEBUG Processing 128/918 atomic regions from SNP 38227 to 38828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,499 DEBUG Processing 47/480 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:15,522 DEBUG Processing 149/871 atomic regions from SNP 44548 to 45149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,692 DEBUG Processing 129/918 atomic regions from SNP 38528 to 39129 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,693 DEBUG Processing 83/1038 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,702 DEBUG Processing 58/1146 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,738 DEBUG Processing 48/480 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:15,771 DEBUG Processing 150/871 atomic regions from SNP 44849 to 45450 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,928 DEBUG Processing 130/918 atomic regions from SNP 38829 to 39430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,950 DEBUG Processing 84/1038 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,971 DEBUG Processing 49/480 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:15,985 DEBUG Processing 59/1146 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,032 DEBUG Processing 151/871 atomic regions from SNP 45150 to 45751 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,159 DEBUG Processing 131/918 atomic regions from SNP 39130 to 39731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,199 DEBUG Processing 50/480 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:16,205 DEBUG Processing 85/1038 atomic regions from SNP 25284 to 25885 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,268 DEBUG Processing 60/1146 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,310 DEBUG Processing 152/871 atomic regions from SNP 45451 to 46052 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,394 DEBUG Processing 132/918 atomic regions from SNP 39431 to 40032 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,431 DEBUG Processing 51/480 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:16,464 DEBUG Processing 86/1038 atomic regions from SNP 25585 to 26186 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,548 DEBUG Processing 61/1146 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,567 DEBUG Processing 153/871 atomic regions from SNP 45752 to 46353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,627 DEBUG Processing 133/918 atomic regions from SNP 39732 to 40333 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,661 DEBUG Processing 52/480 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:16,721 DEBUG Processing 87/1038 atomic regions from SNP 25886 to 26487 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,828 DEBUG Processing 154/871 atomic regions from SNP 46053 to 46654 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,829 DEBUG Processing 62/1146 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,865 DEBUG Processing 134/918 atomic regions from SNP 40033 to 40634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,895 DEBUG Processing 53/480 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:16,977 DEBUG Processing 88/1038 atomic regions from SNP 26187 to 26788 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,093 DEBUG Processing 155/871 atomic regions from SNP 46354 to 46955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,103 DEBUG Processing 135/918 atomic regions from SNP 40334 to 40935 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,114 DEBUG Processing 63/1146 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,135 DEBUG Processing 54/480 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:17,231 DEBUG Processing 89/1038 atomic regions from SNP 26488 to 27089 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,350 DEBUG Processing 136/918 atomic regions from SNP 40635 to 41236 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,361 DEBUG Processing 156/871 atomic regions from SNP 46655 to 47256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,380 DEBUG Processing 55/480 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:17,403 DEBUG Processing 64/1146 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,506 DEBUG Processing 90/1038 atomic regions from SNP 26789 to 27390 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,592 DEBUG Processing 137/918 atomic regions from SNP 40936 to 41537 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,611 DEBUG Processing 157/871 atomic regions from SNP 46956 to 47557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,625 DEBUG Processing 56/480 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:17,692 DEBUG Processing 65/1146 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,793 DEBUG Processing 91/1038 atomic regions from SNP 27090 to 27691 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,835 DEBUG Processing 138/918 atomic regions from SNP 41237 to 41838 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,850 DEBUG Processing 158/871 atomic regions from SNP 47257 to 47858 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,861 DEBUG Processing 57/480 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:17,972 DEBUG Processing 66/1146 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,064 DEBUG Processing 92/1038 atomic regions from SNP 27391 to 27992 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,083 DEBUG Processing 139/918 atomic regions from SNP 41538 to 42139 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,099 DEBUG Processing 58/480 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:18,100 DEBUG Processing 159/871 atomic regions from SNP 47558 to 48159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,248 DEBUG Processing 67/1146 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,329 DEBUG Processing 140/918 atomic regions from SNP 41839 to 42440 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,337 DEBUG Processing 93/1038 atomic regions from SNP 27692 to 28293 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,339 DEBUG Processing 160/871 atomic regions from SNP 47859 to 48460 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,339 DEBUG Processing 59/480 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:18,525 DEBUG Processing 68/1146 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,566 DEBUG Processing 141/918 atomic regions from SNP 42140 to 42741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,579 DEBUG Processing 60/480 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:18,579 DEBUG Processing 161/871 atomic regions from SNP 48160 to 48761 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,626 DEBUG Processing 94/1038 atomic regions from SNP 27993 to 28594 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,800 DEBUG Processing 142/918 atomic regions from SNP 42441 to 43042 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,802 DEBUG Processing 69/1146 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,812 DEBUG Processing 61/480 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:18,833 DEBUG Processing 162/871 atomic regions from SNP 48461 to 49062 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,903 DEBUG Processing 95/1038 atomic regions from SNP 28294 to 28895 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,033 DEBUG Processing 143/918 atomic regions from SNP 42742 to 43343 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,047 DEBUG Processing 62/480 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:19,080 DEBUG Processing 70/1146 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,082 DEBUG Processing 163/871 atomic regions from SNP 48762 to 49363 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,183 DEBUG Processing 96/1038 atomic regions from SNP 28595 to 29196 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,271 DEBUG Processing 144/918 atomic regions from SNP 43043 to 43644 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,284 DEBUG Processing 63/480 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:19,319 DEBUG Processing 164/871 atomic regions from SNP 49063 to 49664 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,358 DEBUG Processing 71/1146 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,451 DEBUG Processing 97/1038 atomic regions from SNP 28896 to 29497 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,510 DEBUG Processing 145/918 atomic regions from SNP 43344 to 43945 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,526 DEBUG Processing 64/480 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:19,571 DEBUG Processing 165/871 atomic regions from SNP 49364 to 49965 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,635 DEBUG Processing 72/1146 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,712 DEBUG Processing 98/1038 atomic regions from SNP 29197 to 29798 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,765 DEBUG Processing 146/918 atomic regions from SNP 43645 to 44246 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,769 DEBUG Processing 65/480 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:19,822 DEBUG Processing 166/871 atomic regions from SNP 49665 to 50266 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,910 DEBUG Processing 73/1146 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,970 DEBUG Processing 99/1038 atomic regions from SNP 29498 to 30099 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,002 DEBUG Processing 147/918 atomic regions from SNP 43946 to 44547 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,005 DEBUG Processing 66/480 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:20,070 DEBUG Processing 167/871 atomic regions from SNP 49966 to 50567 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,187 DEBUG Processing 74/1146 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,233 DEBUG Processing 148/918 atomic regions from SNP 44247 to 44848 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,239 DEBUG Processing 67/480 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:20,243 DEBUG Processing 100/1038 atomic regions from SNP 29799 to 30400 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,310 DEBUG Processing 168/871 atomic regions from SNP 50267 to 50868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,464 DEBUG Processing 75/1146 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,471 DEBUG Processing 149/918 atomic regions from SNP 44548 to 45149 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,481 DEBUG Processing 68/480 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:20,521 DEBUG Processing 101/1038 atomic regions from SNP 30100 to 30701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,561 DEBUG Processing 169/871 atomic regions from SNP 50568 to 51169 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,711 DEBUG Processing 150/918 atomic regions from SNP 44849 to 45450 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,728 DEBUG Processing 69/480 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:20,750 DEBUG Processing 76/1146 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,800 DEBUG Processing 102/1038 atomic regions from SNP 30401 to 31002 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,821 DEBUG Processing 170/871 atomic regions from SNP 50869 to 51470 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,943 DEBUG Processing 151/918 atomic regions from SNP 45150 to 45751 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,981 DEBUG Processing 70/480 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:21,037 DEBUG Processing 77/1146 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,079 DEBUG Processing 103/1038 atomic regions from SNP 30702 to 31303 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,091 DEBUG Processing 171/871 atomic regions from SNP 51170 to 51771 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,171 DEBUG Processing 152/918 atomic regions from SNP 45451 to 46052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,239 DEBUG Processing 71/480 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:21,320 DEBUG Processing 78/1146 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,348 DEBUG Processing 172/871 atomic regions from SNP 51471 to 52072 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,349 DEBUG Processing 104/1038 atomic regions from SNP 31003 to 31604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,407 DEBUG Processing 153/918 atomic regions from SNP 45752 to 46353 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,495 DEBUG Processing 72/480 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:21,585 DEBUG Processing 173/871 atomic regions from SNP 51772 to 52373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,603 DEBUG Processing 79/1146 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,624 DEBUG Processing 105/1038 atomic regions from SNP 31304 to 31905 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,648 DEBUG Processing 154/918 atomic regions from SNP 46053 to 46654 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,759 DEBUG Processing 73/480 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:21,829 DEBUG Processing 174/871 atomic regions from SNP 52073 to 52674 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,885 DEBUG Processing 80/1146 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,887 DEBUG Processing 155/918 atomic regions from SNP 46354 to 46955 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,895 DEBUG Processing 106/1038 atomic regions from SNP 31605 to 32206 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,012 DEBUG Processing 74/480 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:22,084 DEBUG Processing 175/871 atomic regions from SNP 52374 to 52975 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,126 DEBUG Processing 156/918 atomic regions from SNP 46655 to 47256 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,164 DEBUG Processing 107/1038 atomic regions from SNP 31906 to 32507 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,164 DEBUG Processing 81/1146 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,260 DEBUG Processing 75/480 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:22,337 DEBUG Processing 176/871 atomic regions from SNP 52675 to 53276 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,389 DEBUG Processing 157/918 atomic regions from SNP 46956 to 47557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,439 DEBUG Processing 108/1038 atomic regions from SNP 32207 to 32808 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,443 DEBUG Processing 82/1146 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,505 DEBUG Processing 76/480 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:22,599 DEBUG Processing 177/871 atomic regions from SNP 52976 to 53577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,642 DEBUG Processing 158/918 atomic regions from SNP 47257 to 47858 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,703 DEBUG Processing 109/1038 atomic regions from SNP 32508 to 33109 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,721 DEBUG Processing 83/1146 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,752 DEBUG Processing 77/480 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:22,846 DEBUG Processing 178/871 atomic regions from SNP 53277 to 53878 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,885 DEBUG Processing 159/918 atomic regions from SNP 47558 to 48159 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,967 DEBUG Processing 110/1038 atomic regions from SNP 32809 to 33410 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,989 DEBUG Processing 78/480 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:22,998 DEBUG Processing 84/1146 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,100 DEBUG Processing 179/871 atomic regions from SNP 53578 to 54179 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,142 DEBUG Processing 160/918 atomic regions from SNP 47859 to 48460 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,223 DEBUG Processing 79/480 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:23,228 DEBUG Processing 111/1038 atomic regions from SNP 33110 to 33711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,274 DEBUG Processing 85/1146 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,368 DEBUG Processing 180/871 atomic regions from SNP 53879 to 54480 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,389 DEBUG Processing 161/918 atomic regions from SNP 48160 to 48761 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,451 DEBUG Processing 80/480 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:23,488 DEBUG Processing 112/1038 atomic regions from SNP 33411 to 34012 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,549 DEBUG Processing 86/1146 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,634 DEBUG Processing 162/918 atomic regions from SNP 48461 to 49062 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,635 DEBUG Processing 181/871 atomic regions from SNP 54180 to 54781 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,682 DEBUG Processing 81/480 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:23,749 DEBUG Processing 113/1038 atomic regions from SNP 33712 to 34313 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,824 DEBUG Processing 87/1146 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,877 DEBUG Processing 163/918 atomic regions from SNP 48762 to 49363 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,897 DEBUG Processing 182/871 atomic regions from SNP 54481 to 55082 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,918 DEBUG Processing 82/480 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:24,012 DEBUG Processing 114/1038 atomic regions from SNP 34013 to 34614 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,101 DEBUG Processing 88/1146 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,117 DEBUG Processing 164/918 atomic regions from SNP 49063 to 49664 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,154 DEBUG Processing 83/480 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:24,158 DEBUG Processing 183/871 atomic regions from SNP 54782 to 55383 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,282 DEBUG Processing 115/1038 atomic regions from SNP 34314 to 34915 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,354 DEBUG Processing 165/918 atomic regions from SNP 49364 to 49965 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,376 DEBUG Processing 89/1146 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,389 DEBUG Processing 84/480 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:24,412 DEBUG Processing 184/871 atomic regions from SNP 55083 to 55684 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,550 DEBUG Processing 116/1038 atomic regions from SNP 34615 to 35216 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,629 DEBUG Processing 166/918 atomic regions from SNP 49665 to 50266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,651 DEBUG Processing 90/1146 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,654 DEBUG Processing 85/480 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:24,664 DEBUG Processing 185/871 atomic regions from SNP 55384 to 55985 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,816 DEBUG Processing 117/1038 atomic regions from SNP 34916 to 35517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,911 DEBUG Processing 86/480 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:24,913 DEBUG Processing 186/871 atomic regions from SNP 55685 to 56286 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,929 DEBUG Processing 167/918 atomic regions from SNP 49966 to 50567 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,931 DEBUG Processing 91/1146 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,081 DEBUG Processing 118/1038 atomic regions from SNP 35217 to 35818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,154 DEBUG Processing 87/480 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:25,161 DEBUG Processing 187/871 atomic regions from SNP 55986 to 56587 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,210 DEBUG Processing 92/1146 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,212 DEBUG Processing 168/918 atomic regions from SNP 50267 to 50868 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,349 DEBUG Processing 119/1038 atomic regions from SNP 35518 to 36119 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,407 DEBUG Processing 88/480 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:25,415 DEBUG Processing 188/871 atomic regions from SNP 56287 to 56888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,488 DEBUG Processing 93/1146 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,503 DEBUG Processing 169/918 atomic regions from SNP 50568 to 51169 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,619 DEBUG Processing 120/1038 atomic regions from SNP 35819 to 36420 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,648 DEBUG Processing 89/480 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:25,677 DEBUG Processing 189/871 atomic regions from SNP 56588 to 57189 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,762 DEBUG Processing 94/1146 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,776 DEBUG Processing 170/918 atomic regions from SNP 50869 to 51470 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,889 DEBUG Processing 90/480 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:25,891 DEBUG Processing 121/1038 atomic regions from SNP 36120 to 36721 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,943 DEBUG Processing 190/871 atomic regions from SNP 56889 to 57490 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,036 DEBUG Processing 95/1146 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,070 DEBUG Processing 171/918 atomic regions from SNP 51170 to 51771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,134 DEBUG Processing 91/480 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:26,164 DEBUG Processing 122/1038 atomic regions from SNP 36421 to 37022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,209 DEBUG Processing 191/871 atomic regions from SNP 57190 to 57791 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,308 DEBUG Processing 96/1146 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,336 DEBUG Processing 172/918 atomic regions from SNP 51471 to 52072 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,385 DEBUG Processing 92/480 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:26,437 DEBUG Processing 123/1038 atomic regions from SNP 36722 to 37323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,468 DEBUG Processing 192/871 atomic regions from SNP 57491 to 58092 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,583 DEBUG Processing 97/1146 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,622 DEBUG Processing 173/918 atomic regions from SNP 51772 to 52373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,647 DEBUG Processing 93/480 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:26,708 DEBUG Processing 124/1038 atomic regions from SNP 37023 to 37624 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,712 DEBUG Processing 193/871 atomic regions from SNP 57792 to 58393 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,862 DEBUG Processing 98/1146 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,910 DEBUG Processing 174/918 atomic regions from SNP 52073 to 52674 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,915 DEBUG Processing 94/480 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:26,949 DEBUG Processing 194/871 atomic regions from SNP 58093 to 58694 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,976 DEBUG Processing 125/1038 atomic regions from SNP 37324 to 37925 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,149 DEBUG Processing 99/1146 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,172 DEBUG Processing 95/480 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:27,182 DEBUG Processing 195/871 atomic regions from SNP 58394 to 58995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,194 DEBUG Processing 175/918 atomic regions from SNP 52374 to 52975 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,240 DEBUG Processing 126/1038 atomic regions from SNP 37625 to 38226 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,413 DEBUG Processing 196/871 atomic regions from SNP 58695 to 59296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,415 DEBUG Processing 96/480 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:27,432 DEBUG Processing 100/1146 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,489 DEBUG Processing 176/918 atomic regions from SNP 52675 to 53276 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,515 DEBUG Processing 127/1038 atomic regions from SNP 37926 to 38527 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,654 DEBUG Processing 97/480 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:27,663 DEBUG Processing 197/871 atomic regions from SNP 58996 to 59597 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,711 DEBUG Processing 101/1146 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,784 DEBUG Processing 128/1038 atomic regions from SNP 38227 to 38828 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,803 DEBUG Processing 177/918 atomic regions from SNP 52976 to 53577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,904 DEBUG Processing 98/480 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:27,914 DEBUG Processing 198/871 atomic regions from SNP 59297 to 59898 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,993 DEBUG Processing 102/1146 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,054 DEBUG Processing 129/1038 atomic regions from SNP 38528 to 39129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,085 DEBUG Processing 178/918 atomic regions from SNP 53277 to 53878 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,147 DEBUG Processing 99/480 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:28,154 DEBUG Processing 199/871 atomic regions from SNP 59598 to 60199 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,265 DEBUG Processing 103/1146 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,340 DEBUG Processing 130/1038 atomic regions from SNP 38829 to 39430 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,375 DEBUG Processing 179/918 atomic regions from SNP 53578 to 54179 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,400 DEBUG Processing 100/480 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:28,409 DEBUG Processing 200/871 atomic regions from SNP 59899 to 60500 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,539 DEBUG Processing 104/1146 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,625 DEBUG Processing 180/918 atomic regions from SNP 53879 to 54480 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,643 DEBUG Processing 131/1038 atomic regions from SNP 39130 to 39731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,652 DEBUG Processing 101/480 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:28,666 DEBUG Processing 201/871 atomic regions from SNP 60200 to 60801 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,813 DEBUG Processing 105/1146 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,873 DEBUG Processing 181/918 atomic regions from SNP 54180 to 54781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,905 DEBUG Processing 102/480 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:28,925 DEBUG Processing 202/871 atomic regions from SNP 60501 to 61102 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,948 DEBUG Processing 132/1038 atomic regions from SNP 39431 to 40032 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,083 DEBUG Processing 106/1146 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,116 DEBUG Processing 182/918 atomic regions from SNP 54481 to 55082 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,153 DEBUG Processing 103/480 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:29,172 DEBUG Processing 203/871 atomic regions from SNP 60802 to 61403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,257 DEBUG Processing 133/1038 atomic regions from SNP 39732 to 40333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,352 DEBUG Processing 107/1146 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,355 DEBUG Processing 183/918 atomic regions from SNP 54782 to 55383 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,383 DEBUG Processing 104/480 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:29,413 DEBUG Processing 204/871 atomic regions from SNP 61103 to 61704 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,553 DEBUG Processing 134/1038 atomic regions from SNP 40033 to 40634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,597 DEBUG Processing 184/918 atomic regions from SNP 55083 to 55684 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,610 DEBUG Processing 105/480 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:29,622 DEBUG Processing 108/1146 atomic regions from SNP 32207 to 32808 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,649 DEBUG Processing 205/871 atomic regions from SNP 61404 to 62005 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,839 DEBUG Processing 185/918 atomic regions from SNP 55384 to 55985 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,844 DEBUG Processing 135/1038 atomic regions from SNP 40334 to 40935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,844 DEBUG Processing 106/480 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:29,880 DEBUG Processing 206/871 atomic regions from SNP 61705 to 62306 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,896 DEBUG Processing 109/1146 atomic regions from SNP 32508 to 33109 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,081 DEBUG Processing 107/480 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:30,083 DEBUG Processing 186/918 atomic regions from SNP 55685 to 56286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,116 DEBUG Processing 207/871 atomic regions from SNP 62006 to 62607 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,134 DEBUG Processing 136/1038 atomic regions from SNP 40635 to 41236 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,166 DEBUG Processing 110/1146 atomic regions from SNP 32809 to 33410 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,324 DEBUG Processing 108/480 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:30,328 DEBUG Processing 187/918 atomic regions from SNP 55986 to 56587 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,356 DEBUG Processing 208/871 atomic regions from SNP 62307 to 62908 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,434 DEBUG Processing 137/1038 atomic regions from SNP 40936 to 41537 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,438 DEBUG Processing 111/1146 atomic regions from SNP 33110 to 33711 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,565 DEBUG Processing 109/480 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:30,573 DEBUG Processing 188/918 atomic regions from SNP 56287 to 56888 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,592 DEBUG Processing 209/871 atomic regions from SNP 62608 to 63209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,703 DEBUG Processing 112/1146 atomic regions from SNP 33411 to 34012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,732 DEBUG Processing 138/1038 atomic regions from SNP 41237 to 41838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,816 DEBUG Processing 110/480 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:30,820 DEBUG Processing 189/918 atomic regions from SNP 56588 to 57189 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,826 DEBUG Processing 210/871 atomic regions from SNP 62909 to 63510 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,967 DEBUG Processing 113/1146 atomic regions from SNP 33712 to 34313 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,030 DEBUG Processing 139/1038 atomic regions from SNP 41538 to 42139 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,065 DEBUG Processing 211/871 atomic regions from SNP 63210 to 63811 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,067 DEBUG Processing 190/918 atomic regions from SNP 56889 to 57490 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,074 DEBUG Processing 111/480 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:31,233 DEBUG Processing 114/1146 atomic regions from SNP 34013 to 34614 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,307 DEBUG Processing 212/871 atomic regions from SNP 63511 to 64112 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,316 DEBUG Processing 191/918 atomic regions from SNP 57190 to 57791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,324 DEBUG Processing 112/480 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:31,330 DEBUG Processing 140/1038 atomic regions from SNP 41839 to 42440 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,504 DEBUG Processing 115/1146 atomic regions from SNP 34314 to 34915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,546 DEBUG Processing 213/871 atomic regions from SNP 63812 to 64413 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,566 DEBUG Processing 192/918 atomic regions from SNP 57491 to 58092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,578 DEBUG Processing 113/480 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:31,633 DEBUG Processing 141/1038 atomic regions from SNP 42140 to 42741 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,767 DEBUG Processing 116/1146 atomic regions from SNP 34615 to 35216 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,783 DEBUG Processing 214/871 atomic regions from SNP 64113 to 64714 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,811 DEBUG Processing 193/918 atomic regions from SNP 57792 to 58393 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,818 DEBUG Processing 114/480 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:31,915 DEBUG Processing 142/1038 atomic regions from SNP 42441 to 43042 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,018 DEBUG Processing 215/871 atomic regions from SNP 64414 to 65015 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,033 DEBUG Processing 117/1146 atomic regions from SNP 34916 to 35517 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,053 DEBUG Processing 194/918 atomic regions from SNP 58093 to 58694 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,065 DEBUG Processing 115/480 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:32,213 DEBUG Processing 143/1038 atomic regions from SNP 42742 to 43343 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,251 DEBUG Processing 216/871 atomic regions from SNP 64715 to 65316 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,293 DEBUG Processing 195/918 atomic regions from SNP 58394 to 58995 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,303 DEBUG Processing 118/1146 atomic regions from SNP 35217 to 35818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,308 DEBUG Processing 116/480 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:32,483 DEBUG Processing 217/871 atomic regions from SNP 65016 to 65617 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,505 DEBUG Processing 144/1038 atomic regions from SNP 43043 to 43644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,533 DEBUG Processing 196/918 atomic regions from SNP 58695 to 59296 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,562 DEBUG Processing 117/480 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:32,583 DEBUG Processing 119/1146 atomic regions from SNP 35518 to 36119 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,723 DEBUG Processing 218/871 atomic regions from SNP 65317 to 65918 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,775 DEBUG Processing 197/918 atomic regions from SNP 58996 to 59597 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,792 DEBUG Processing 145/1038 atomic regions from SNP 43344 to 43945 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,809 DEBUG Processing 118/480 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:32,871 DEBUG Processing 120/1146 atomic regions from SNP 35819 to 36420 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,957 DEBUG Processing 219/871 atomic regions from SNP 65618 to 66219 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,014 DEBUG Processing 198/918 atomic regions from SNP 59297 to 59898 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,052 DEBUG Processing 119/480 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:33,083 DEBUG Processing 146/1038 atomic regions from SNP 43645 to 44246 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,155 DEBUG Processing 121/1146 atomic regions from SNP 36120 to 36721 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,193 DEBUG Processing 220/871 atomic regions from SNP 65919 to 66520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,251 DEBUG Processing 199/918 atomic regions from SNP 59598 to 60199 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,286 DEBUG Processing 120/480 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:33,379 DEBUG Processing 147/1038 atomic regions from SNP 43946 to 44547 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,432 DEBUG Processing 221/871 atomic regions from SNP 66220 to 66821 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,440 DEBUG Processing 122/1146 atomic regions from SNP 36421 to 37022 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,494 DEBUG Processing 200/918 atomic regions from SNP 59899 to 60500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,521 DEBUG Processing 121/480 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:33,674 DEBUG Processing 222/871 atomic regions from SNP 66521 to 67122 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,685 DEBUG Processing 148/1038 atomic regions from SNP 44247 to 44848 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,725 DEBUG Processing 123/1146 atomic regions from SNP 36722 to 37323 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,747 DEBUG Processing 201/918 atomic regions from SNP 60200 to 60801 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,760 DEBUG Processing 122/480 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:33,907 DEBUG Processing 223/871 atomic regions from SNP 66822 to 67423 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,982 DEBUG Processing 149/1038 atomic regions from SNP 44548 to 45149 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,005 DEBUG Processing 202/918 atomic regions from SNP 60501 to 61102 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,008 DEBUG Processing 123/480 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:34,012 DEBUG Processing 124/1146 atomic regions from SNP 37023 to 37624 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,132 DEBUG Processing 224/871 atomic regions from SNP 67123 to 67724 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,259 DEBUG Processing 124/480 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:34,263 DEBUG Processing 203/918 atomic regions from SNP 60802 to 61403 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,291 DEBUG Processing 150/1038 atomic regions from SNP 44849 to 45450 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,306 DEBUG Processing 125/1146 atomic regions from SNP 37324 to 37925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,360 DEBUG Processing 225/871 atomic regions from SNP 67424 to 68025 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,511 DEBUG Processing 125/480 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:34,517 DEBUG Processing 204/918 atomic regions from SNP 61103 to 61704 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,592 DEBUG Processing 151/1038 atomic regions from SNP 45150 to 45751 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,594 DEBUG Processing 126/1146 atomic regions from SNP 37625 to 38226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,602 DEBUG Processing 226/871 atomic regions from SNP 67725 to 68326 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,760 DEBUG Processing 126/480 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:34,763 DEBUG Processing 205/918 atomic regions from SNP 61404 to 62005 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,850 DEBUG Processing 227/871 atomic regions from SNP 68026 to 68627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,876 DEBUG Processing 127/1146 atomic regions from SNP 37926 to 38527 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,892 DEBUG Processing 152/1038 atomic regions from SNP 45451 to 46052 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,005 DEBUG Processing 206/918 atomic regions from SNP 61705 to 62306 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,005 DEBUG Processing 127/480 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:35,096 DEBUG Processing 228/871 atomic regions from SNP 68327 to 68928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,150 DEBUG Processing 128/1146 atomic regions from SNP 38227 to 38828 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,198 DEBUG Processing 153/1038 atomic regions from SNP 45752 to 46353 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,249 DEBUG Processing 128/480 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:35,251 DEBUG Processing 207/918 atomic regions from SNP 62006 to 62607 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,345 DEBUG Processing 229/871 atomic regions from SNP 68628 to 69229 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,420 DEBUG Processing 129/1146 atomic regions from SNP 38528 to 39129 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,496 DEBUG Processing 129/480 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:35,498 DEBUG Processing 208/918 atomic regions from SNP 62307 to 62908 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,501 DEBUG Processing 154/1038 atomic regions from SNP 46053 to 46654 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,589 DEBUG Processing 230/871 atomic regions from SNP 68929 to 69530 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,641 DEBUG Segmenting atomic regions: 2025-01-31 09:45:35,693 DEBUG Processing 130/1146 atomic regions from SNP 38829 to 39430 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,740 DEBUG Processing 130/480 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:35,749 DEBUG Processing 209/918 atomic regions from SNP 62608 to 63209 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,760 DEBUG Processing 1/659 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,801 DEBUG Processing 155/1038 atomic regions from SNP 46354 to 46955 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,834 DEBUG Processing 231/871 atomic regions from SNP 69230 to 69831 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,971 DEBUG Processing 131/1146 atomic regions from SNP 39130 to 39731 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,986 DEBUG Processing 131/480 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:36,001 DEBUG Processing 210/918 atomic regions from SNP 62909 to 63510 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,037 DEBUG Processing 2/659 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,080 DEBUG Processing 232/871 atomic regions from SNP 69531 to 70132 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,102 DEBUG Processing 156/1038 atomic regions from SNP 46655 to 47256 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,224 DEBUG Processing 132/480 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:36,250 DEBUG Processing 211/918 atomic regions from SNP 63210 to 63811 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,254 DEBUG Processing 132/1146 atomic regions from SNP 39431 to 40032 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,308 DEBUG Processing 3/659 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,330 DEBUG Processing 233/871 atomic regions from SNP 69832 to 70433 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,390 DEBUG Processing 157/1038 atomic regions from SNP 46956 to 47557 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,462 DEBUG Processing 133/480 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:36,498 DEBUG Processing 212/918 atomic regions from SNP 63511 to 64112 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,541 DEBUG Processing 133/1146 atomic regions from SNP 39732 to 40333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,560 DEBUG Processing 4/659 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,581 DEBUG Processing 234/871 atomic regions from SNP 70133 to 70734 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,677 DEBUG Processing 158/1038 atomic regions from SNP 47257 to 47858 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,702 DEBUG Processing 134/480 atomic regions from SNP 40033 to 40634 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:36,747 DEBUG Processing 213/918 atomic regions from SNP 63812 to 64413 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,822 DEBUG Processing 134/1146 atomic regions from SNP 40033 to 40634 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,826 DEBUG Processing 235/871 atomic regions from SNP 70434 to 71035 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,830 DEBUG Processing 5/659 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,948 DEBUG Processing 135/480 atomic regions from SNP 40334 to 40935 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:36,969 DEBUG Processing 159/1038 atomic regions from SNP 47558 to 48159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,995 DEBUG Processing 214/918 atomic regions from SNP 64113 to 64714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,070 DEBUG Processing 236/871 atomic regions from SNP 70735 to 71336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,100 DEBUG Processing 135/1146 atomic regions from SNP 40334 to 40935 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,105 DEBUG Processing 6/659 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,186 DEBUG Processing 136/480 atomic regions from SNP 40635 to 41236 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:37,242 DEBUG Processing 215/918 atomic regions from SNP 64414 to 65015 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,263 DEBUG Processing 160/1038 atomic regions from SNP 47859 to 48460 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,316 DEBUG Processing 237/871 atomic regions from SNP 71036 to 71637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,368 DEBUG Processing 7/659 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,373 DEBUG Processing 136/1146 atomic regions from SNP 40635 to 41236 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,426 DEBUG Processing 137/480 atomic regions from SNP 40936 to 41537 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:37,497 DEBUG Processing 216/918 atomic regions from SNP 64715 to 65316 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,566 DEBUG Processing 238/871 atomic regions from SNP 71337 to 71938 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,575 DEBUG Processing 161/1038 atomic regions from SNP 48160 to 48761 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,632 DEBUG Processing 8/659 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,646 DEBUG Processing 137/1146 atomic regions from SNP 40936 to 41537 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,664 DEBUG Processing 138/480 atomic regions from SNP 41237 to 41838 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:37,754 DEBUG Processing 217/918 atomic regions from SNP 65016 to 65617 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,814 DEBUG Processing 239/871 atomic regions from SNP 71638 to 72239 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,887 DEBUG Processing 162/1038 atomic regions from SNP 48461 to 49062 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,905 DEBUG Processing 139/480 atomic regions from SNP 41538 to 42139 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:37,908 DEBUG Processing 9/659 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,933 DEBUG Processing 138/1146 atomic regions from SNP 41237 to 41838 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,018 DEBUG Processing 218/918 atomic regions from SNP 65317 to 65918 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,058 DEBUG Processing 240/871 atomic regions from SNP 71939 to 72540 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,144 DEBUG Processing 140/480 atomic regions from SNP 41839 to 42440 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:38,166 DEBUG Processing 10/659 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,193 DEBUG Processing 163/1038 atomic regions from SNP 48762 to 49363 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,219 DEBUG Processing 139/1146 atomic regions from SNP 41538 to 42139 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,276 DEBUG Processing 219/918 atomic regions from SNP 65618 to 66219 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,303 DEBUG Processing 241/871 atomic regions from SNP 72240 to 72841 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,382 DEBUG Processing 141/480 atomic regions from SNP 42140 to 42741 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:38,421 DEBUG Processing 11/659 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,504 DEBUG Processing 164/1038 atomic regions from SNP 49063 to 49664 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,514 DEBUG Processing 140/1146 atomic regions from SNP 41839 to 42440 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,536 DEBUG Processing 220/918 atomic regions from SNP 65919 to 66520 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,581 DEBUG Processing 242/871 atomic regions from SNP 72541 to 73142 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,624 DEBUG Processing 142/480 atomic regions from SNP 42441 to 43042 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:38,685 DEBUG Processing 12/659 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,795 DEBUG Processing 221/918 atomic regions from SNP 66220 to 66821 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,806 DEBUG Processing 141/1146 atomic regions from SNP 42140 to 42741 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,813 DEBUG Processing 165/1038 atomic regions from SNP 49364 to 49965 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,851 DEBUG Processing 243/871 atomic regions from SNP 72842 to 73443 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,871 DEBUG Processing 143/480 atomic regions from SNP 42742 to 43343 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:38,938 DEBUG Processing 13/659 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,048 DEBUG Processing 222/918 atomic regions from SNP 66521 to 67122 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,093 DEBUG Processing 142/1146 atomic regions from SNP 42441 to 43042 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,104 DEBUG Processing 244/871 atomic regions from SNP 73143 to 73744 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,117 DEBUG Processing 166/1038 atomic regions from SNP 49665 to 50266 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,123 DEBUG Processing 144/480 atomic regions from SNP 43043 to 43644 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:39,199 DEBUG Processing 14/659 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,294 DEBUG Processing 223/918 atomic regions from SNP 66822 to 67423 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,346 DEBUG Processing 245/871 atomic regions from SNP 73444 to 74045 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,371 DEBUG Processing 145/480 atomic regions from SNP 43344 to 43945 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:39,383 DEBUG Processing 143/1146 atomic regions from SNP 42742 to 43343 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,421 DEBUG Processing 167/1038 atomic regions from SNP 49966 to 50567 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,483 DEBUG Processing 15/659 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,539 DEBUG Processing 224/918 atomic regions from SNP 67123 to 67724 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,580 DEBUG Processing 246/871 atomic regions from SNP 73745 to 74346 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,621 DEBUG Processing 146/480 atomic regions from SNP 43645 to 44246 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:39,678 DEBUG Processing 144/1146 atomic regions from SNP 43043 to 43644 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,740 DEBUG Processing 168/1038 atomic regions from SNP 50267 to 50868 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,761 DEBUG Processing 16/659 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,790 DEBUG Processing 225/918 atomic regions from SNP 67424 to 68025 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,817 DEBUG Processing 247/871 atomic regions from SNP 74046 to 74647 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,866 DEBUG Processing 147/480 atomic regions from SNP 43946 to 44547 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:39,969 DEBUG Processing 145/1146 atomic regions from SNP 43344 to 43945 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,044 DEBUG Processing 17/659 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,053 DEBUG Processing 226/918 atomic regions from SNP 67725 to 68326 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,059 DEBUG Processing 169/1038 atomic regions from SNP 50568 to 51169 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,067 DEBUG Processing 248/871 atomic regions from SNP 74347 to 74948 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,112 DEBUG Processing 148/480 atomic regions from SNP 44247 to 44848 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:40,257 DEBUG Processing 146/1146 atomic regions from SNP 43645 to 44246 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,321 DEBUG Processing 227/918 atomic regions from SNP 68026 to 68627 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,325 DEBUG Processing 249/871 atomic regions from SNP 74648 to 75249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,327 DEBUG Processing 18/659 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,363 DEBUG Processing 149/480 atomic regions from SNP 44548 to 45149 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:40,377 DEBUG Processing 170/1038 atomic regions from SNP 50869 to 51470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,544 DEBUG Processing 147/1146 atomic regions from SNP 43946 to 44547 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,579 DEBUG Processing 228/918 atomic regions from SNP 68327 to 68928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,579 DEBUG Processing 250/871 atomic regions from SNP 74949 to 75550 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,600 DEBUG Processing 19/659 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,619 DEBUG Processing 150/480 atomic regions from SNP 44849 to 45450 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:40,691 DEBUG Processing 171/1038 atomic regions from SNP 51170 to 51771 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,821 DEBUG Processing 148/1146 atomic regions from SNP 44247 to 44848 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,826 DEBUG Processing 251/871 atomic regions from SNP 75250 to 75851 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,834 DEBUG Processing 229/918 atomic regions from SNP 68628 to 69229 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,865 DEBUG Processing 151/480 atomic regions from SNP 45150 to 45751 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:40,881 DEBUG Processing 20/659 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,997 DEBUG Processing 172/1038 atomic regions from SNP 51471 to 52072 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,068 DEBUG Processing 252/871 atomic regions from SNP 75551 to 76152 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,088 DEBUG Processing 230/918 atomic regions from SNP 68929 to 69530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,099 DEBUG Processing 149/1146 atomic regions from SNP 44548 to 45149 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,104 DEBUG Processing 152/480 atomic regions from SNP 45451 to 46052 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:41,155 DEBUG Processing 21/659 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,301 DEBUG Processing 173/1038 atomic regions from SNP 51772 to 52373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,312 DEBUG Processing 253/871 atomic regions from SNP 75852 to 76453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,339 DEBUG Processing 231/918 atomic regions from SNP 69230 to 69831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,345 DEBUG Processing 153/480 atomic regions from SNP 45752 to 46353 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:41,384 DEBUG Processing 150/1146 atomic regions from SNP 44849 to 45450 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,421 DEBUG Processing 22/659 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,560 DEBUG Processing 254/871 atomic regions from SNP 76153 to 76754 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,589 DEBUG Processing 154/480 atomic regions from SNP 46053 to 46654 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:41,589 DEBUG Processing 232/918 atomic regions from SNP 69531 to 70132 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,610 DEBUG Processing 174/1038 atomic regions from SNP 52073 to 52674 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,667 DEBUG Processing 151/1146 atomic regions from SNP 45150 to 45751 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,683 DEBUG Processing 23/659 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,809 DEBUG Processing 255/871 atomic regions from SNP 76454 to 77055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,843 DEBUG Processing 233/918 atomic regions from SNP 69832 to 70433 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,845 DEBUG Processing 155/480 atomic regions from SNP 46354 to 46955 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:41,915 DEBUG Processing 175/1038 atomic regions from SNP 52374 to 52975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,954 DEBUG Processing 152/1146 atomic regions from SNP 45451 to 46052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,961 DEBUG Processing 24/659 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,055 DEBUG Processing 256/871 atomic regions from SNP 76755 to 77356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,097 DEBUG Processing 234/918 atomic regions from SNP 70133 to 70734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,102 DEBUG Processing 156/480 atomic regions from SNP 46655 to 47256 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:42,220 DEBUG Processing 176/1038 atomic regions from SNP 52675 to 53275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,236 DEBUG Processing 25/659 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,239 DEBUG Processing 153/1146 atomic regions from SNP 45752 to 46353 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,302 DEBUG Processing 257/871 atomic regions from SNP 77056 to 77657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,351 DEBUG Processing 235/918 atomic regions from SNP 70434 to 71035 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,358 DEBUG Processing 157/480 atomic regions from SNP 46956 to 47557 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:42,510 DEBUG Processing 26/659 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,529 DEBUG Processing 177/1038 atomic regions from SNP 52975 to 53575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,530 DEBUG Processing 154/1146 atomic regions from SNP 46053 to 46654 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,552 DEBUG Processing 258/871 atomic regions from SNP 77357 to 77958 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,611 DEBUG Processing 236/918 atomic regions from SNP 70735 to 71336 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,613 DEBUG Processing 158/480 atomic regions from SNP 47257 to 47858 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:42,779 DEBUG Processing 27/659 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,804 DEBUG Processing 259/871 atomic regions from SNP 77658 to 78259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,823 DEBUG Processing 155/1146 atomic regions from SNP 46354 to 46955 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,843 DEBUG Processing 178/1038 atomic regions from SNP 53275 to 53875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,870 DEBUG Processing 237/918 atomic regions from SNP 71036 to 71637 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,870 DEBUG Processing 159/480 atomic regions from SNP 47558 to 48159 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:43,041 DEBUG Processing 28/659 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,054 DEBUG Processing 260/871 atomic regions from SNP 77959 to 78560 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,120 DEBUG Processing 156/1146 atomic regions from SNP 46655 to 47256 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,127 DEBUG Processing 160/480 atomic regions from SNP 47859 to 48460 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:43,130 DEBUG Processing 238/918 atomic regions from SNP 71337 to 71938 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,163 DEBUG Processing 179/1038 atomic regions from SNP 53575 to 54175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,297 DEBUG Processing 29/659 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,302 DEBUG Processing 261/871 atomic regions from SNP 78260 to 78861 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,386 DEBUG Processing 161/480 atomic regions from SNP 48160 to 48761 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:43,389 DEBUG Processing 239/918 atomic regions from SNP 71638 to 72239 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,421 DEBUG Processing 157/1146 atomic regions from SNP 46956 to 47557 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,480 DEBUG Processing 180/1038 atomic regions from SNP 53875 to 54475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,546 DEBUG Processing 262/871 atomic regions from SNP 78561 to 79162 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,552 DEBUG Processing 30/659 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,642 DEBUG Processing 162/480 atomic regions from SNP 48461 to 49062 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:43,643 DEBUG Processing 240/918 atomic regions from SNP 71939 to 72540 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,719 DEBUG Processing 158/1146 atomic regions from SNP 47257 to 47858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,793 DEBUG Processing 263/871 atomic regions from SNP 78862 to 79463 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,799 DEBUG Processing 181/1038 atomic regions from SNP 54175 to 54775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,805 DEBUG Processing 31/659 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,892 DEBUG Processing 163/480 atomic regions from SNP 48762 to 49363 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:43,895 DEBUG Processing 241/918 atomic regions from SNP 72240 to 72841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,017 DEBUG Processing 159/1146 atomic regions from SNP 47558 to 48159 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,040 DEBUG Processing 264/871 atomic regions from SNP 79163 to 79764 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,051 DEBUG Processing 32/659 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,100 DEBUG Processing 182/1038 atomic regions from SNP 54475 to 55075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,137 DEBUG Processing 164/480 atomic regions from SNP 49063 to 49664 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:44,148 DEBUG Processing 242/918 atomic regions from SNP 72541 to 73142 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,284 DEBUG Processing 265/871 atomic regions from SNP 79464 to 80065 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,296 DEBUG Processing 33/659 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,314 DEBUG Processing 160/1146 atomic regions from SNP 47859 to 48460 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,386 DEBUG Processing 165/480 atomic regions from SNP 49364 to 49965 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:44,400 DEBUG Processing 183/1038 atomic regions from SNP 54775 to 55375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,403 DEBUG Processing 243/918 atomic regions from SNP 72842 to 73443 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,525 DEBUG Processing 266/871 atomic regions from SNP 79765 to 80366 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,557 DEBUG Processing 34/659 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,608 DEBUG Processing 161/1146 atomic regions from SNP 48160 to 48761 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,640 DEBUG Processing 166/480 atomic regions from SNP 49665 to 50266 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:44,656 DEBUG Processing 244/918 atomic regions from SNP 73143 to 73744 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,701 DEBUG Processing 184/1038 atomic regions from SNP 55075 to 55675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,769 DEBUG Processing 267/871 atomic regions from SNP 80066 to 80667 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,800 DEBUG Processing 35/659 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,896 DEBUG Processing 167/480 atomic regions from SNP 49966 to 50567 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:44,904 DEBUG Processing 162/1146 atomic regions from SNP 48461 to 49062 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,908 DEBUG Processing 245/918 atomic regions from SNP 73444 to 74045 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,001 DEBUG Processing 185/1038 atomic regions from SNP 55375 to 55975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,019 DEBUG Processing 268/871 atomic regions from SNP 80367 to 80968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,047 DEBUG Processing 36/659 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,145 DEBUG Processing 168/480 atomic regions from SNP 50267 to 50868 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:45,151 DEBUG Processing 246/918 atomic regions from SNP 73745 to 74346 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,203 DEBUG Processing 163/1146 atomic regions from SNP 48762 to 49363 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,274 DEBUG Processing 269/871 atomic regions from SNP 80668 to 81269 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,299 DEBUG Processing 37/659 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,305 DEBUG Processing 186/1038 atomic regions from SNP 55675 to 56275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,392 DEBUG Processing 169/480 atomic regions from SNP 50568 to 51169 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:45,393 DEBUG Processing 247/918 atomic regions from SNP 74046 to 74647 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,498 DEBUG Processing 164/1146 atomic regions from SNP 49063 to 49664 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,524 DEBUG Processing 270/871 atomic regions from SNP 80969 to 81570 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,554 DEBUG Processing 38/659 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,615 DEBUG Processing 187/1038 atomic regions from SNP 55975 to 56575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,641 DEBUG Processing 170/480 atomic regions from SNP 50869 to 51470 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:45,645 DEBUG Processing 248/918 atomic regions from SNP 74347 to 74948 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,767 DEBUG Processing 271/871 atomic regions from SNP 81270 to 81871 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,787 DEBUG Processing 165/1146 atomic regions from SNP 49364 to 49965 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,799 DEBUG Processing 39/659 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,896 DEBUG Processing 171/480 atomic regions from SNP 51170 to 51771 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:45,904 DEBUG Processing 249/918 atomic regions from SNP 74648 to 75249 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,919 DEBUG Processing 188/1038 atomic regions from SNP 56275 to 56875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,004 DEBUG Processing 272/871 atomic regions from SNP 81571 to 82172 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,035 DEBUG Processing 40/659 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,072 DEBUG Processing 166/1146 atomic regions from SNP 49665 to 50266 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,148 DEBUG Processing 172/480 atomic regions from SNP 51471 to 52072 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:46,164 DEBUG Processing 250/918 atomic regions from SNP 74949 to 75550 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,212 DEBUG Processing 189/1038 atomic regions from SNP 56575 to 57175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,249 DEBUG Processing 273/871 atomic regions from SNP 81872 to 82473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,270 DEBUG Processing 41/659 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,363 DEBUG Processing 167/1146 atomic regions from SNP 49966 to 50567 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,405 DEBUG Processing 173/480 atomic regions from SNP 51772 to 52373 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:46,425 DEBUG Processing 251/918 atomic regions from SNP 75250 to 75851 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,498 DEBUG Processing 274/871 atomic regions from SNP 82173 to 82773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,498 DEBUG Processing 190/1038 atomic regions from SNP 56875 to 57475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,516 DEBUG Processing 42/659 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,658 DEBUG Processing 174/480 atomic regions from SNP 52073 to 52674 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:46,660 DEBUG Processing 168/1146 atomic regions from SNP 50267 to 50868 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,682 DEBUG Processing 252/918 atomic regions from SNP 75551 to 76152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,754 DEBUG Processing 275/871 atomic regions from SNP 82473 to 83073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,767 DEBUG Processing 43/659 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,791 DEBUG Processing 191/1038 atomic regions from SNP 57175 to 57775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,910 DEBUG Processing 175/480 atomic regions from SNP 52374 to 52975 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:46,934 DEBUG Processing 253/918 atomic regions from SNP 75852 to 76453 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,949 DEBUG Processing 169/1146 atomic regions from SNP 50568 to 51169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,006 DEBUG Processing 276/871 atomic regions from SNP 82773 to 83373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,017 DEBUG Processing 44/659 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,095 DEBUG Processing 192/1038 atomic regions from SNP 57475 to 58075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,161 DEBUG Processing 176/480 atomic regions from SNP 52675 to 53276 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:47,184 DEBUG Processing 254/918 atomic regions from SNP 76153 to 76754 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,239 DEBUG Processing 170/1146 atomic regions from SNP 50869 to 51470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,256 DEBUG Processing 277/871 atomic regions from SNP 83073 to 83673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,263 DEBUG Processing 45/659 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,398 DEBUG Processing 193/1038 atomic regions from SNP 57775 to 58375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,413 DEBUG Processing 177/480 atomic regions from SNP 52976 to 53577 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:47,441 DEBUG Processing 255/918 atomic regions from SNP 76454 to 77055 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,498 DEBUG Processing 278/871 atomic regions from SNP 83373 to 83973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,502 DEBUG Processing 46/659 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,524 DEBUG Processing 171/1146 atomic regions from SNP 51170 to 51771 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,673 DEBUG Processing 178/480 atomic regions from SNP 53277 to 53878 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:47,701 DEBUG Processing 194/1038 atomic regions from SNP 58075 to 58675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,704 DEBUG Processing 256/918 atomic regions from SNP 76755 to 77356 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,745 DEBUG Processing 279/871 atomic regions from SNP 83673 to 84273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,746 DEBUG Processing 47/659 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,810 DEBUG Processing 172/1146 atomic regions from SNP 51471 to 52072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,934 DEBUG Processing 179/480 atomic regions from SNP 53578 to 54179 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:47,967 DEBUG Processing 257/918 atomic regions from SNP 77056 to 77657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,995 DEBUG Processing 48/659 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,996 DEBUG Processing 280/871 atomic regions from SNP 83973 to 84573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,998 DEBUG Processing 195/1038 atomic regions from SNP 58375 to 58975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,095 DEBUG Processing 173/1146 atomic regions from SNP 51772 to 52373 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,195 DEBUG Processing 180/480 atomic regions from SNP 53879 to 54480 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:48,232 DEBUG Processing 258/918 atomic regions from SNP 77357 to 77957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,250 DEBUG Processing 49/659 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,254 DEBUG Processing 281/871 atomic regions from SNP 84273 to 84873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,317 DEBUG Processing 196/1038 atomic regions from SNP 58675 to 59275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,368 DEBUG Processing 174/1146 atomic regions from SNP 52073 to 52674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,448 DEBUG Processing 181/480 atomic regions from SNP 54180 to 54781 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:48,491 DEBUG Processing 259/918 atomic regions from SNP 77657 to 78257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,505 DEBUG Processing 50/659 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,512 DEBUG Processing 282/871 atomic regions from SNP 84573 to 85173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,627 DEBUG Processing 197/1038 atomic regions from SNP 58975 to 59575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,652 DEBUG Processing 175/1146 atomic regions from SNP 52374 to 52975 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,697 DEBUG Processing 182/480 atomic regions from SNP 54481 to 55082 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:48,749 DEBUG Processing 260/918 atomic regions from SNP 77957 to 78557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,757 DEBUG Processing 51/659 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,772 DEBUG Processing 283/871 atomic regions from SNP 84873 to 85473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,925 DEBUG Processing 198/1038 atomic regions from SNP 59275 to 59875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,949 DEBUG Processing 176/1146 atomic regions from SNP 52675 to 53276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,949 DEBUG Processing 183/480 atomic regions from SNP 54782 to 55383 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:49,010 DEBUG Processing 52/659 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,010 DEBUG Processing 261/918 atomic regions from SNP 78257 to 78857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,039 DEBUG Processing 284/871 atomic regions from SNP 85173 to 85773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,205 DEBUG Processing 184/480 atomic regions from SNP 55083 to 55684 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:49,229 DEBUG Processing 199/1038 atomic regions from SNP 59575 to 60175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,255 DEBUG Processing 53/659 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,259 DEBUG Processing 177/1146 atomic regions from SNP 52976 to 53577 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,265 DEBUG Processing 262/918 atomic regions from SNP 78557 to 79157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,303 DEBUG Processing 285/871 atomic regions from SNP 85473 to 86073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,461 DEBUG Processing 185/480 atomic regions from SNP 55384 to 55985 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:49,497 DEBUG Processing 54/659 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,527 DEBUG Processing 263/918 atomic regions from SNP 78857 to 79457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,530 DEBUG Processing 200/1038 atomic regions from SNP 59875 to 60475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,557 DEBUG Processing 286/871 atomic regions from SNP 85773 to 86373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,575 DEBUG Processing 178/1146 atomic regions from SNP 53277 to 53878 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,712 DEBUG Processing 186/480 atomic regions from SNP 55685 to 56286 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:49,738 DEBUG Processing 55/659 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,787 DEBUG Processing 264/918 atomic regions from SNP 79157 to 79757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,812 DEBUG Processing 287/871 atomic regions from SNP 86073 to 86673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,828 DEBUG Processing 201/1038 atomic regions from SNP 60175 to 60775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,884 DEBUG Processing 179/1146 atomic regions from SNP 53578 to 54179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,959 DEBUG Processing 187/480 atomic regions from SNP 55986 to 56587 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:49,980 DEBUG Processing 56/659 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,051 DEBUG Processing 265/918 atomic regions from SNP 79457 to 80057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,064 DEBUG Processing 288/871 atomic regions from SNP 86373 to 86973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,113 DEBUG Processing 202/1038 atomic regions from SNP 60475 to 61075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,186 DEBUG Processing 180/1146 atomic regions from SNP 53879 to 54480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,208 DEBUG Processing 188/480 atomic regions from SNP 56287 to 56888 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:50,217 DEBUG Processing 57/659 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,318 DEBUG Processing 289/871 atomic regions from SNP 86673 to 87273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,322 DEBUG Processing 266/918 atomic regions from SNP 79757 to 80357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,401 DEBUG Processing 203/1038 atomic regions from SNP 60775 to 61375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,452 DEBUG Processing 58/659 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,469 DEBUG Processing 189/480 atomic regions from SNP 56588 to 57189 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:50,495 DEBUG Processing 181/1146 atomic regions from SNP 54180 to 54781 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,575 DEBUG Processing 290/871 atomic regions from SNP 86973 to 87573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,594 DEBUG Processing 267/918 atomic regions from SNP 80057 to 80657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,687 DEBUG Processing 59/659 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,695 DEBUG Processing 204/1038 atomic regions from SNP 61075 to 61675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,742 DEBUG Processing 190/480 atomic regions from SNP 56889 to 57490 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:50,810 DEBUG Processing 182/1146 atomic regions from SNP 54481 to 55082 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,828 DEBUG Processing 291/871 atomic regions from SNP 87273 to 87873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,849 DEBUG Processing 268/918 atomic regions from SNP 80357 to 80957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,929 DEBUG Processing 60/659 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,986 DEBUG Processing 205/1038 atomic regions from SNP 61375 to 61975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,997 DEBUG Processing 191/480 atomic regions from SNP 57190 to 57791 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:51,081 DEBUG Processing 292/871 atomic regions from SNP 87573 to 88173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,100 DEBUG Processing 269/918 atomic regions from SNP 80657 to 81257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,131 DEBUG Processing 183/1146 atomic regions from SNP 54782 to 55383 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,169 DEBUG Processing 61/659 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,267 DEBUG Processing 192/480 atomic regions from SNP 57491 to 58092 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:51,277 DEBUG Processing 206/1038 atomic regions from SNP 61675 to 62275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,330 DEBUG Processing 293/871 atomic regions from SNP 87873 to 88473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,364 DEBUG Processing 270/918 atomic regions from SNP 80957 to 81557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,419 DEBUG Processing 62/659 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,454 DEBUG Processing 184/1146 atomic regions from SNP 55083 to 55684 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,538 DEBUG Processing 193/480 atomic regions from SNP 57792 to 58393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:51,571 DEBUG Processing 207/1038 atomic regions from SNP 61975 to 62575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,577 DEBUG Processing 294/871 atomic regions from SNP 88173 to 88773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,633 DEBUG Processing 271/918 atomic regions from SNP 81257 to 81857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,664 DEBUG Processing 63/659 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,787 DEBUG Processing 185/1146 atomic regions from SNP 55384 to 55985 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,820 DEBUG Processing 194/480 atomic regions from SNP 58093 to 58694 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:51,831 DEBUG Processing 295/871 atomic regions from SNP 88473 to 89073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,864 DEBUG Processing 208/1038 atomic regions from SNP 62275 to 62875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,902 DEBUG Processing 272/918 atomic regions from SNP 81557 to 82157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,906 DEBUG Processing 64/659 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,091 DEBUG Processing 296/871 atomic regions from SNP 88773 to 89373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,109 DEBUG Processing 195/480 atomic regions from SNP 58394 to 58995 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:52,112 DEBUG Processing 186/1146 atomic regions from SNP 55685 to 56286 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,159 DEBUG Processing 65/659 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,160 DEBUG Processing 209/1038 atomic regions from SNP 62575 to 63175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,183 DEBUG Processing 273/918 atomic regions from SNP 81857 to 82457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,347 DEBUG Processing 297/871 atomic regions from SNP 89073 to 89673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,399 DEBUG Processing 196/480 atomic regions from SNP 58695 to 59296 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:52,416 DEBUG Processing 66/659 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,423 DEBUG Processing 187/1146 atomic regions from SNP 55986 to 56587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,454 DEBUG Processing 210/1038 atomic regions from SNP 62875 to 63475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,459 DEBUG Processing 274/918 atomic regions from SNP 82157 to 82757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,598 DEBUG Processing 298/871 atomic regions from SNP 89373 to 89973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,667 DEBUG Processing 67/659 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,680 DEBUG Processing 197/480 atomic regions from SNP 58996 to 59597 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:52,725 DEBUG Processing 188/1146 atomic regions from SNP 56287 to 56888 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,742 DEBUG Processing 275/918 atomic regions from SNP 82457 to 83057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,770 DEBUG Processing 211/1038 atomic regions from SNP 63175 to 63775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,835 DEBUG Processing 299/871 atomic regions from SNP 89673 to 90273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,915 DEBUG Processing 68/659 atomic regions from SNP 20167 to 20767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,945 DEBUG Processing 198/480 atomic regions from SNP 59297 to 59898 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:53,031 DEBUG Processing 189/1146 atomic regions from SNP 56588 to 57189 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,040 DEBUG Processing 276/918 atomic regions from SNP 82757 to 83357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,072 DEBUG Processing 212/1038 atomic regions from SNP 63475 to 64075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,074 DEBUG Processing 300/871 atomic regions from SNP 89973 to 90573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,152 DEBUG Processing 69/659 atomic regions from SNP 20467 to 21067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,196 DEBUG Processing 199/480 atomic regions from SNP 59598 to 60199 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:53,324 DEBUG Processing 301/871 atomic regions from SNP 90273 to 90873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,331 DEBUG Processing 190/1146 atomic regions from SNP 56889 to 57490 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,332 DEBUG Processing 277/918 atomic regions from SNP 83057 to 83657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,355 DEBUG Processing 213/1038 atomic regions from SNP 63775 to 64375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,389 DEBUG Processing 70/659 atomic regions from SNP 20767 to 21367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,440 DEBUG Processing 200/480 atomic regions from SNP 59899 to 60500 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:53,579 DEBUG Processing 302/871 atomic regions from SNP 90573 to 91173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,628 DEBUG Processing 278/918 atomic regions from SNP 83357 to 83957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,639 DEBUG Processing 71/659 atomic regions from SNP 21067 to 21667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,643 DEBUG Processing 191/1146 atomic regions from SNP 57190 to 57791 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,645 DEBUG Processing 214/1038 atomic regions from SNP 64075 to 64675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,699 DEBUG Processing 201/480 atomic regions from SNP 60200 to 60801 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:53,833 DEBUG Processing 303/871 atomic regions from SNP 90873 to 91473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,889 DEBUG Processing 72/659 atomic regions from SNP 21367 to 21967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,922 DEBUG Processing 279/918 atomic regions from SNP 83657 to 84257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,947 DEBUG Processing 215/1038 atomic regions from SNP 64375 to 64975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,959 DEBUG Processing 202/480 atomic regions from SNP 60501 to 61102 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:53,964 DEBUG Processing 192/1146 atomic regions from SNP 57491 to 58092 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,077 DEBUG Processing 304/871 atomic regions from SNP 91173 to 91773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,137 DEBUG Processing 73/659 atomic regions from SNP 21667 to 22267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,204 DEBUG Processing 280/918 atomic regions from SNP 83957 to 84557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,224 DEBUG Processing 203/480 atomic regions from SNP 60802 to 61403 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:54,263 DEBUG Processing 216/1038 atomic regions from SNP 64675 to 65275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,302 DEBUG Processing 193/1146 atomic regions from SNP 57792 to 58393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,320 DEBUG Processing 305/871 atomic regions from SNP 91473 to 92073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,384 DEBUG Processing 74/659 atomic regions from SNP 21967 to 22567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,478 DEBUG Processing 281/918 atomic regions from SNP 84257 to 84857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,496 DEBUG Processing 204/480 atomic regions from SNP 61103 to 61704 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:54,564 DEBUG Processing 217/1038 atomic regions from SNP 64975 to 65575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,566 DEBUG Processing 306/871 atomic regions from SNP 91773 to 92373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,631 DEBUG Processing 75/659 atomic regions from SNP 22267 to 22867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,634 DEBUG Processing 194/1146 atomic regions from SNP 58093 to 58694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,746 DEBUG Processing 282/918 atomic regions from SNP 84557 to 85157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,764 DEBUG Processing 205/480 atomic regions from SNP 61404 to 62005 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:54,813 DEBUG Processing 307/871 atomic regions from SNP 92073 to 92673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,869 DEBUG Processing 218/1038 atomic regions from SNP 65275 to 65875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,881 DEBUG Processing 76/659 atomic regions from SNP 22567 to 23167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,972 DEBUG Processing 195/1146 atomic regions from SNP 58394 to 58995 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,000 DEBUG Processing 283/918 atomic regions from SNP 84857 to 85457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,047 DEBUG Processing 206/480 atomic regions from SNP 61705 to 62306 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:55,066 DEBUG Processing 308/871 atomic regions from SNP 92373 to 92973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,128 DEBUG Processing 77/659 atomic regions from SNP 22867 to 23467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,175 DEBUG Processing 219/1038 atomic regions from SNP 65575 to 66175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,253 DEBUG Processing 284/918 atomic regions from SNP 85157 to 85757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,303 DEBUG Processing 196/1146 atomic regions from SNP 58695 to 59296 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,319 DEBUG Processing 309/871 atomic regions from SNP 92673 to 93273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,332 DEBUG Processing 207/480 atomic regions from SNP 62006 to 62607 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:55,369 DEBUG Processing 78/659 atomic regions from SNP 23167 to 23767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,453 DEBUG Processing 220/1038 atomic regions from SNP 65875 to 66475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,504 DEBUG Processing 285/918 atomic regions from SNP 85457 to 86057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,575 DEBUG Processing 310/871 atomic regions from SNP 92973 to 93573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,611 DEBUG Processing 79/659 atomic regions from SNP 23467 to 24067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,622 DEBUG Processing 208/480 atomic regions from SNP 62307 to 62908 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:55,630 DEBUG Processing 197/1146 atomic regions from SNP 58996 to 59597 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,729 DEBUG Processing 221/1038 atomic regions from SNP 66175 to 66775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,753 DEBUG Processing 286/918 atomic regions from SNP 85757 to 86357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,832 DEBUG Processing 311/871 atomic regions from SNP 93273 to 93873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,861 DEBUG Processing 80/659 atomic regions from SNP 23767 to 24367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,911 DEBUG Processing 209/480 atomic regions from SNP 62608 to 63209 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:55,951 DEBUG Processing 198/1146 atomic regions from SNP 59297 to 59898 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,997 DEBUG Processing 287/918 atomic regions from SNP 86057 to 86657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,006 DEBUG Processing 222/1038 atomic regions from SNP 66475 to 67075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,088 DEBUG Processing 312/871 atomic regions from SNP 93573 to 94173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,112 DEBUG Processing 81/659 atomic regions from SNP 24067 to 24667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,185 DEBUG Processing 210/480 atomic regions from SNP 62909 to 63510 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:56,243 DEBUG Processing 288/918 atomic regions from SNP 86357 to 86957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,256 DEBUG Processing 199/1146 atomic regions from SNP 59598 to 60199 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,285 DEBUG Processing 223/1038 atomic regions from SNP 66775 to 67375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,340 DEBUG Processing 313/871 atomic regions from SNP 93873 to 94473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,358 DEBUG Processing 82/659 atomic regions from SNP 24367 to 24967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,463 DEBUG Processing 211/480 atomic regions from SNP 63210 to 63811 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:56,494 DEBUG Processing 289/918 atomic regions from SNP 86657 to 87257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,568 DEBUG Processing 224/1038 atomic regions from SNP 67075 to 67675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,569 DEBUG Processing 200/1146 atomic regions from SNP 59899 to 60500 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,585 DEBUG Processing 314/871 atomic regions from SNP 94173 to 94773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,598 DEBUG Processing 83/659 atomic regions from SNP 24667 to 25267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,728 DEBUG Processing 212/480 atomic regions from SNP 63511 to 64112 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:56,748 DEBUG Processing 290/918 atomic regions from SNP 86957 to 87557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,832 DEBUG Processing 315/871 atomic regions from SNP 94473 to 95073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,842 DEBUG Processing 84/659 atomic regions from SNP 24967 to 25567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,853 DEBUG Processing 225/1038 atomic regions from SNP 67375 to 67975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,896 DEBUG Processing 201/1146 atomic regions from SNP 60200 to 60801 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,977 DEBUG Processing 213/480 atomic regions from SNP 63812 to 64413 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:56,992 DEBUG Processing 291/918 atomic regions from SNP 87257 to 87857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,078 DEBUG Processing 316/871 atomic regions from SNP 94773 to 95373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,088 DEBUG Processing 85/659 atomic regions from SNP 25267 to 25867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,140 DEBUG Processing 226/1038 atomic regions from SNP 67675 to 68275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,213 DEBUG Processing 202/1146 atomic regions from SNP 60501 to 61102 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,236 DEBUG Processing 214/480 atomic regions from SNP 64113 to 64714 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:57,240 DEBUG Processing 292/918 atomic regions from SNP 87557 to 88157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,327 DEBUG Processing 317/871 atomic regions from SNP 95073 to 95673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,352 DEBUG Processing 86/659 atomic regions from SNP 25567 to 26167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,431 DEBUG Processing 227/1038 atomic regions from SNP 67975 to 68575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,480 DEBUG Processing 293/918 atomic regions from SNP 87857 to 88457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,489 DEBUG Processing 215/480 atomic regions from SNP 64414 to 65015 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:57,529 DEBUG Processing 203/1146 atomic regions from SNP 60802 to 61403 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,572 DEBUG Processing 318/871 atomic regions from SNP 95373 to 95973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,604 DEBUG Processing 87/659 atomic regions from SNP 25867 to 26467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,714 DEBUG Processing 228/1038 atomic regions from SNP 68275 to 68875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,725 DEBUG Processing 294/918 atomic regions from SNP 88157 to 88757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,743 DEBUG Processing 216/480 atomic regions from SNP 64715 to 65316 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:57,822 DEBUG Processing 319/871 atomic regions from SNP 95673 to 96273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,855 DEBUG Processing 88/659 atomic regions from SNP 26167 to 26767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,864 DEBUG Processing 204/1146 atomic regions from SNP 61103 to 61704 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,974 DEBUG Processing 295/918 atomic regions from SNP 88457 to 89057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,991 DEBUG Processing 229/1038 atomic regions from SNP 68575 to 69175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,995 DEBUG Processing 217/480 atomic regions from SNP 65016 to 65617 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:58,070 DEBUG Processing 320/871 atomic regions from SNP 95973 to 96573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,099 DEBUG Processing 89/659 atomic regions from SNP 26467 to 27067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,190 DEBUG Processing 205/1146 atomic regions from SNP 61404 to 62005 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,233 DEBUG Processing 296/918 atomic regions from SNP 88757 to 89357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,267 DEBUG Processing 218/480 atomic regions from SNP 65317 to 65918 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:58,272 DEBUG Processing 230/1038 atomic regions from SNP 68875 to 69475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,326 DEBUG Processing 321/871 atomic regions from SNP 96273 to 96873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,344 DEBUG Processing 90/659 atomic regions from SNP 26767 to 27367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,485 DEBUG Processing 297/918 atomic regions from SNP 89057 to 89657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,498 DEBUG Processing 206/1146 atomic regions from SNP 61705 to 62306 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,525 DEBUG Processing 219/480 atomic regions from SNP 65618 to 66219 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:58,563 DEBUG Processing 231/1038 atomic regions from SNP 69175 to 69775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,580 DEBUG Processing 322/871 atomic regions from SNP 96573 to 97173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,598 DEBUG Processing 91/659 atomic regions from SNP 27067 to 27667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,726 DEBUG Processing 298/918 atomic regions from SNP 89357 to 89957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,779 DEBUG Processing 220/480 atomic regions from SNP 65919 to 66520 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:58,800 DEBUG Processing 207/1146 atomic regions from SNP 62006 to 62607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,830 DEBUG Processing 323/871 atomic regions from SNP 96873 to 97473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,858 DEBUG Processing 232/1038 atomic regions from SNP 69475 to 70075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,861 DEBUG Processing 92/659 atomic regions from SNP 27367 to 27967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,963 DEBUG Processing 299/918 atomic regions from SNP 89657 to 90257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,031 DEBUG Processing 221/480 atomic regions from SNP 66220 to 66821 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:59,075 DEBUG Processing 324/871 atomic regions from SNP 97173 to 97773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,110 DEBUG Processing 208/1146 atomic regions from SNP 62307 to 62908 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,115 DEBUG Processing 93/659 atomic regions from SNP 27667 to 28267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,145 DEBUG Processing 233/1038 atomic regions from SNP 69775 to 70375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,209 DEBUG Processing 300/918 atomic regions from SNP 89957 to 90557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,278 DEBUG Processing 222/480 atomic regions from SNP 66521 to 67122 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:59,317 DEBUG Processing 325/871 atomic regions from SNP 97473 to 98073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,358 DEBUG Processing 94/659 atomic regions from SNP 27967 to 28567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,421 DEBUG Processing 234/1038 atomic regions from SNP 70075 to 70675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,422 DEBUG Processing 209/1146 atomic regions from SNP 62608 to 63209 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,465 DEBUG Processing 301/918 atomic regions from SNP 90257 to 90857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,529 DEBUG Processing 223/480 atomic regions from SNP 66822 to 67422 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:59,560 DEBUG Processing 326/871 atomic regions from SNP 97773 to 98373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,597 DEBUG Processing 95/659 atomic regions from SNP 28267 to 28867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,700 DEBUG Processing 235/1038 atomic regions from SNP 70375 to 70975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,716 DEBUG Processing 302/918 atomic regions from SNP 90557 to 91157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,739 DEBUG Processing 210/1146 atomic regions from SNP 62909 to 63510 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,780 DEBUG Processing 224/480 atomic regions from SNP 67122 to 67722 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:59,800 DEBUG Processing 327/871 atomic regions from SNP 98073 to 98673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,834 DEBUG Processing 96/659 atomic regions from SNP 28567 to 29167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,963 DEBUG Processing 303/918 atomic regions from SNP 90857 to 91457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,980 DEBUG Processing 236/1038 atomic regions from SNP 70675 to 71275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,040 DEBUG Processing 225/480 atomic regions from SNP 67422 to 68022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:00,049 DEBUG Processing 328/871 atomic regions from SNP 98373 to 98973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,066 DEBUG Processing 211/1146 atomic regions from SNP 63210 to 63811 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,078 DEBUG Processing 97/659 atomic regions from SNP 28867 to 29467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,202 DEBUG Processing 304/918 atomic regions from SNP 91157 to 91757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,259 DEBUG Processing 237/1038 atomic regions from SNP 70975 to 71575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,300 DEBUG Processing 226/480 atomic regions from SNP 67722 to 68322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:00,304 DEBUG Processing 329/871 atomic regions from SNP 98673 to 99273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,329 DEBUG Processing 98/659 atomic regions from SNP 29167 to 29767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,389 DEBUG Processing 212/1146 atomic regions from SNP 63511 to 64112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,438 DEBUG Processing 305/918 atomic regions from SNP 91457 to 92057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,545 DEBUG Processing 238/1038 atomic regions from SNP 71275 to 71875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,556 DEBUG Processing 330/871 atomic regions from SNP 98973 to 99573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,576 DEBUG Processing 227/480 atomic regions from SNP 68022 to 68622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:00,595 DEBUG Processing 99/659 atomic regions from SNP 29467 to 30067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,683 DEBUG Processing 306/918 atomic regions from SNP 91757 to 92357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,715 DEBUG Processing 213/1146 atomic regions from SNP 63812 to 64413 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,800 DEBUG Processing 331/871 atomic regions from SNP 99273 to 99873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,820 DEBUG Processing 239/1038 atomic regions from SNP 71575 to 72175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,836 DEBUG Processing 228/480 atomic regions from SNP 68322 to 68922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:00,846 DEBUG Processing 100/659 atomic regions from SNP 29767 to 30367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,935 DEBUG Processing 307/918 atomic regions from SNP 92057 to 92657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,039 DEBUG Processing 214/1146 atomic regions from SNP 64113 to 64714 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,039 DEBUG Processing 332/871 atomic regions from SNP 99573 to 100173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,099 DEBUG Processing 229/480 atomic regions from SNP 68622 to 69222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:01,104 DEBUG Processing 101/659 atomic regions from SNP 30067 to 30667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,106 DEBUG Processing 240/1038 atomic regions from SNP 71875 to 72475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,187 DEBUG Processing 308/918 atomic regions from SNP 92357 to 92957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,276 DEBUG Processing 333/871 atomic regions from SNP 99873 to 100473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,353 DEBUG Processing 215/1146 atomic regions from SNP 64414 to 65015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,359 DEBUG Processing 230/480 atomic regions from SNP 68922 to 69522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:01,360 DEBUG Processing 102/659 atomic regions from SNP 30367 to 30967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,403 DEBUG Processing 241/1038 atomic regions from SNP 72175 to 72775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,441 DEBUG Processing 309/918 atomic regions from SNP 92657 to 93257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,515 DEBUG Processing 334/871 atomic regions from SNP 100173 to 100773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,615 DEBUG Processing 103/659 atomic regions from SNP 30667 to 31267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,617 DEBUG Processing 231/480 atomic regions from SNP 69222 to 69822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:01,666 DEBUG Processing 216/1146 atomic regions from SNP 64715 to 65316 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,692 DEBUG Processing 310/918 atomic regions from SNP 92957 to 93557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,700 DEBUG Processing 242/1038 atomic regions from SNP 72475 to 73075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,758 DEBUG Processing 335/871 atomic regions from SNP 100473 to 101073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,861 DEBUG Processing 232/480 atomic regions from SNP 69522 to 70122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:01,874 DEBUG Processing 104/659 atomic regions from SNP 30967 to 31567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,943 DEBUG Processing 311/918 atomic regions from SNP 93257 to 93857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,978 DEBUG Processing 217/1146 atomic regions from SNP 65016 to 65617 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,994 DEBUG Processing 243/1038 atomic regions from SNP 72775 to 73375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,004 DEBUG Processing 336/871 atomic regions from SNP 100773 to 101373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,103 DEBUG Processing 233/480 atomic regions from SNP 69822 to 70422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:02,132 DEBUG Processing 105/659 atomic regions from SNP 31267 to 31867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,195 DEBUG Processing 312/918 atomic regions from SNP 93557 to 94157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,248 DEBUG Processing 337/871 atomic regions from SNP 101073 to 101673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,281 DEBUG Processing 244/1038 atomic regions from SNP 73075 to 73675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,281 DEBUG Processing 218/1146 atomic regions from SNP 65317 to 65918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,358 DEBUG Processing 234/480 atomic regions from SNP 70122 to 70722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:02,374 DEBUG Processing 106/659 atomic regions from SNP 31567 to 32167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,447 DEBUG Processing 313/918 atomic regions from SNP 93857 to 94457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,493 DEBUG Processing 338/871 atomic regions from SNP 101373 to 101973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,563 DEBUG Processing 245/1038 atomic regions from SNP 73375 to 73975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,574 DEBUG Processing 219/1146 atomic regions from SNP 65618 to 66219 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,616 DEBUG Processing 235/480 atomic regions from SNP 70422 to 71022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:02,620 DEBUG Processing 107/659 atomic regions from SNP 31867 to 32467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,704 DEBUG Processing 314/918 atomic regions from SNP 94157 to 94757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,737 DEBUG Processing 339/871 atomic regions from SNP 101673 to 102273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,843 DEBUG Processing 246/1038 atomic regions from SNP 73675 to 74275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,862 DEBUG Processing 108/659 atomic regions from SNP 32167 to 32767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,868 DEBUG Processing 220/1146 atomic regions from SNP 65919 to 66520 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,870 DEBUG Processing 236/480 atomic regions from SNP 70722 to 71322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:02,961 DEBUG Processing 315/918 atomic regions from SNP 94457 to 95057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,989 DEBUG Processing 340/871 atomic regions from SNP 101973 to 102573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,101 DEBUG Processing 109/659 atomic regions from SNP 32467 to 33067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,122 DEBUG Processing 247/1038 atomic regions from SNP 73975 to 74575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,126 DEBUG Processing 237/480 atomic regions from SNP 71022 to 71622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:03,166 DEBUG Processing 221/1146 atomic regions from SNP 66220 to 66821 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,222 DEBUG Processing 316/918 atomic regions from SNP 94757 to 95357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,245 DEBUG Processing 341/871 atomic regions from SNP 102273 to 102873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,363 DEBUG Processing 110/659 atomic regions from SNP 32767 to 33367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,379 DEBUG Processing 238/480 atomic regions from SNP 71322 to 71922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:03,410 DEBUG Processing 248/1038 atomic regions from SNP 74275 to 74875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,470 DEBUG Processing 222/1146 atomic regions from SNP 66521 to 67122 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,480 DEBUG Processing 317/918 atomic regions from SNP 95057 to 95657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,496 DEBUG Processing 342/871 atomic regions from SNP 102573 to 103173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,622 DEBUG Processing 111/659 atomic regions from SNP 33067 to 33667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,630 DEBUG Processing 239/480 atomic regions from SNP 71622 to 72222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:03,704 DEBUG Processing 249/1038 atomic regions from SNP 74575 to 75175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,736 DEBUG Processing 318/918 atomic regions from SNP 95357 to 95957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,743 DEBUG Processing 343/871 atomic regions from SNP 102873 to 103473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,770 DEBUG Processing 223/1146 atomic regions from SNP 66822 to 67423 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,861 DEBUG Processing 112/659 atomic regions from SNP 33367 to 33967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,881 DEBUG Processing 240/480 atomic regions from SNP 71922 to 72522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:03,988 DEBUG Processing 319/918 atomic regions from SNP 95657 to 96257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,989 DEBUG Processing 344/871 atomic regions from SNP 103173 to 103773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,998 DEBUG Processing 250/1038 atomic regions from SNP 74875 to 75475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,068 DEBUG Processing 224/1146 atomic regions from SNP 67123 to 67724 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,095 DEBUG Processing 113/659 atomic regions from SNP 33667 to 34267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,132 DEBUG Processing 241/480 atomic regions from SNP 72222 to 72822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:04,233 DEBUG Processing 345/871 atomic regions from SNP 103473 to 104073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,240 DEBUG Processing 320/918 atomic regions from SNP 95957 to 96557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,288 DEBUG Processing 251/1038 atomic regions from SNP 75175 to 75775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,330 DEBUG Processing 114/659 atomic regions from SNP 33967 to 34567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,361 DEBUG Processing 225/1146 atomic regions from SNP 67424 to 68025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,387 DEBUG Processing 242/480 atomic regions from SNP 72522 to 73122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:04,479 DEBUG Processing 346/871 atomic regions from SNP 103773 to 104373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,492 DEBUG Processing 321/918 atomic regions from SNP 96257 to 96857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,566 DEBUG Processing 115/659 atomic regions from SNP 34267 to 34867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,574 DEBUG Processing 252/1038 atomic regions from SNP 75475 to 76075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,645 DEBUG Processing 243/480 atomic regions from SNP 72822 to 73422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:04,660 DEBUG Processing 226/1146 atomic regions from SNP 67725 to 68326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,725 DEBUG Processing 347/871 atomic regions from SNP 104073 to 104673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,743 DEBUG Processing 322/918 atomic regions from SNP 96557 to 97157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,803 DEBUG Processing 116/659 atomic regions from SNP 34567 to 35167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,862 DEBUG Processing 253/1038 atomic regions from SNP 75775 to 76375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,909 DEBUG Processing 244/480 atomic regions from SNP 73122 to 73722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:04,964 DEBUG Processing 227/1146 atomic regions from SNP 68026 to 68627 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,967 DEBUG Processing 348/871 atomic regions from SNP 104373 to 104973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,988 DEBUG Processing 323/918 atomic regions from SNP 96857 to 97457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,040 DEBUG Processing 117/659 atomic regions from SNP 34867 to 35467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,155 DEBUG Processing 254/1038 atomic regions from SNP 76075 to 76675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,173 DEBUG Processing 245/480 atomic regions from SNP 73422 to 74022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:05,208 DEBUG Processing 349/871 atomic regions from SNP 104673 to 105273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,233 DEBUG Processing 324/918 atomic regions from SNP 97157 to 97757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,270 DEBUG Processing 228/1146 atomic regions from SNP 68327 to 68928 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,277 DEBUG Processing 118/659 atomic regions from SNP 35167 to 35767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,436 DEBUG Processing 246/480 atomic regions from SNP 73722 to 74322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:05,457 DEBUG Processing 255/1038 atomic regions from SNP 76375 to 76975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,457 DEBUG Processing 350/871 atomic regions from SNP 104973 to 105573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,493 DEBUG Processing 325/918 atomic regions from SNP 97457 to 98057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,527 DEBUG Processing 119/659 atomic regions from SNP 35467 to 36067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,582 DEBUG Processing 229/1146 atomic regions from SNP 68628 to 69229 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,692 DEBUG Processing 247/480 atomic regions from SNP 74022 to 74622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:05,706 DEBUG Processing 351/871 atomic regions from SNP 105273 to 105873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,754 DEBUG Processing 326/918 atomic regions from SNP 97757 to 98357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,758 DEBUG Processing 256/1038 atomic regions from SNP 76675 to 77275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,775 DEBUG Processing 120/659 atomic regions from SNP 35767 to 36367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,880 DEBUG Processing 230/1146 atomic regions from SNP 68929 to 69530 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,942 DEBUG Processing 248/480 atomic regions from SNP 74322 to 74922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:05,955 DEBUG Processing 352/871 atomic regions from SNP 105573 to 106173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,012 DEBUG Processing 327/918 atomic regions from SNP 98057 to 98657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,020 DEBUG Processing 121/659 atomic regions from SNP 36067 to 36667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,055 DEBUG Processing 257/1038 atomic regions from SNP 76975 to 77575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,175 DEBUG Processing 231/1146 atomic regions from SNP 69230 to 69831 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,194 DEBUG Processing 249/480 atomic regions from SNP 74622 to 75222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:06,215 DEBUG Processing 353/871 atomic regions from SNP 105873 to 106473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,268 DEBUG Processing 122/659 atomic regions from SNP 36367 to 36967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,268 DEBUG Processing 328/918 atomic regions from SNP 98357 to 98957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,350 DEBUG Processing 258/1038 atomic regions from SNP 77275 to 77875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,443 DEBUG Processing 250/480 atomic regions from SNP 74922 to 75522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:06,469 DEBUG Processing 354/871 atomic regions from SNP 106173 to 106773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,470 DEBUG Processing 232/1146 atomic regions from SNP 69531 to 70132 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,511 DEBUG Processing 123/659 atomic regions from SNP 36667 to 37267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,522 DEBUG Processing 329/918 atomic regions from SNP 98657 to 99257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,639 DEBUG Processing 259/1038 atomic regions from SNP 77575 to 78175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,698 DEBUG Processing 251/480 atomic regions from SNP 75222 to 75822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:06,735 DEBUG Processing 355/871 atomic regions from SNP 106473 to 107073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,752 DEBUG Processing 124/659 atomic regions from SNP 36967 to 37567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,768 DEBUG Processing 233/1146 atomic regions from SNP 69832 to 70433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,772 DEBUG Processing 330/918 atomic regions from SNP 98957 to 99557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,926 DEBUG Processing 260/1038 atomic regions from SNP 77875 to 78475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,958 DEBUG Processing 252/480 atomic regions from SNP 75522 to 76122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:06,991 DEBUG Processing 356/871 atomic regions from SNP 106773 to 107373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,998 DEBUG Processing 125/659 atomic regions from SNP 37267 to 37867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,027 DEBUG Processing 331/918 atomic regions from SNP 99257 to 99857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,073 DEBUG Processing 234/1146 atomic regions from SNP 70133 to 70734 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,206 DEBUG Processing 261/1038 atomic regions from SNP 78175 to 78775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,206 DEBUG Processing 253/480 atomic regions from SNP 75822 to 76422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:07,243 DEBUG Processing 357/871 atomic regions from SNP 107073 to 107673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,244 DEBUG Processing 126/659 atomic regions from SNP 37567 to 38167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,283 DEBUG Processing 332/918 atomic regions from SNP 99557 to 100157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,385 DEBUG Processing 235/1146 atomic regions from SNP 70434 to 71035 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,461 DEBUG Processing 254/480 atomic regions from SNP 76122 to 76722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:07,488 DEBUG Processing 127/659 atomic regions from SNP 37867 to 38467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,491 DEBUG Processing 262/1038 atomic regions from SNP 78475 to 79075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,494 DEBUG Processing 358/871 atomic regions from SNP 107373 to 107973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,534 DEBUG Processing 333/918 atomic regions from SNP 99857 to 100457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,687 DEBUG Processing 236/1146 atomic regions from SNP 70735 to 71336 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,718 DEBUG Processing 255/480 atomic regions from SNP 76422 to 77022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:07,731 DEBUG Processing 128/659 atomic regions from SNP 38167 to 38767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,746 DEBUG Processing 359/871 atomic regions from SNP 107673 to 108273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,776 DEBUG Processing 263/1038 atomic regions from SNP 78775 to 79375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,781 DEBUG Processing 334/918 atomic regions from SNP 100157 to 100757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,969 DEBUG Processing 256/480 atomic regions from SNP 76722 to 77322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:07,972 DEBUG Processing 129/659 atomic regions from SNP 38467 to 39067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,992 DEBUG Processing 237/1146 atomic regions from SNP 71036 to 71637 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,008 DEBUG Processing 360/871 atomic regions from SNP 107973 to 108573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,041 DEBUG Processing 335/918 atomic regions from SNP 100457 to 101057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,057 DEBUG Processing 264/1038 atomic regions from SNP 79075 to 79675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,211 DEBUG Processing 130/659 atomic regions from SNP 38767 to 39367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,223 DEBUG Processing 257/480 atomic regions from SNP 77022 to 77622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:08,274 DEBUG Processing 361/871 atomic regions from SNP 108273 to 108873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,294 DEBUG Processing 238/1146 atomic regions from SNP 71337 to 71938 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,324 DEBUG Processing 336/918 atomic regions from SNP 100757 to 101357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,346 DEBUG Processing 265/1038 atomic regions from SNP 79375 to 79975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,447 DEBUG Processing 131/659 atomic regions from SNP 39067 to 39667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,468 DEBUG Processing 258/480 atomic regions from SNP 77322 to 77922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:08,536 DEBUG Processing 362/871 atomic regions from SNP 108573 to 109173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,597 DEBUG Processing 239/1146 atomic regions from SNP 71638 to 72239 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,598 DEBUG Processing 337/918 atomic regions from SNP 101057 to 101657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,636 DEBUG Processing 266/1038 atomic regions from SNP 79675 to 80275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,686 DEBUG Processing 132/659 atomic regions from SNP 39367 to 39967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,714 DEBUG Processing 259/480 atomic regions from SNP 77622 to 78222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:08,790 DEBUG Processing 363/871 atomic regions from SNP 108873 to 109473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,847 DEBUG Processing 338/918 atomic regions from SNP 101357 to 101957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,887 DEBUG Processing 240/1146 atomic regions from SNP 71939 to 72540 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,924 DEBUG Processing 267/1038 atomic regions from SNP 79975 to 80575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,928 DEBUG Processing 133/659 atomic regions from SNP 39667 to 40267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,966 DEBUG Processing 260/480 atomic regions from SNP 77922 to 78522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:09,055 DEBUG Processing 364/871 atomic regions from SNP 109173 to 109773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,096 DEBUG Processing 339/918 atomic regions from SNP 101657 to 102257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,168 DEBUG Processing 134/659 atomic regions from SNP 39967 to 40567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,180 DEBUG Processing 241/1146 atomic regions from SNP 72240 to 72841 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,211 DEBUG Processing 268/1038 atomic regions from SNP 80275 to 80875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,225 DEBUG Processing 261/480 atomic regions from SNP 78222 to 78822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:09,301 DEBUG Processing 365/871 atomic regions from SNP 109473 to 110073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,343 DEBUG Processing 340/918 atomic regions from SNP 101957 to 102557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,402 DEBUG Processing 135/659 atomic regions from SNP 40267 to 40867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,475 DEBUG Processing 242/1146 atomic regions from SNP 72541 to 73142 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,486 DEBUG Processing 262/480 atomic regions from SNP 78522 to 79122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:09,501 DEBUG Processing 269/1038 atomic regions from SNP 80575 to 81175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,550 DEBUG Processing 366/871 atomic regions from SNP 109773 to 110373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,599 DEBUG Processing 341/918 atomic regions from SNP 102257 to 102857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,641 DEBUG Processing 136/659 atomic regions from SNP 40567 to 41167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,748 DEBUG Processing 263/480 atomic regions from SNP 78822 to 79422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:09,795 DEBUG Processing 367/871 atomic regions from SNP 110073 to 110673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,801 DEBUG Processing 270/1038 atomic regions from SNP 80875 to 81475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,805 DEBUG Processing 243/1146 atomic regions from SNP 72842 to 73443 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,854 DEBUG Processing 342/918 atomic regions from SNP 102557 to 103157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,881 DEBUG Processing 137/659 atomic regions from SNP 40867 to 41467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,004 DEBUG Processing 264/480 atomic regions from SNP 79122 to 79722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:10,044 DEBUG Processing 368/871 atomic regions from SNP 110373 to 110973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,106 DEBUG Processing 271/1038 atomic regions from SNP 81175 to 81775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,115 DEBUG Processing 343/918 atomic regions from SNP 102857 to 103457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,122 DEBUG Processing 244/1146 atomic regions from SNP 73143 to 73744 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,131 DEBUG Processing 138/659 atomic regions from SNP 41167 to 41767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,249 DEBUG Processing 265/480 atomic regions from SNP 79422 to 80022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:10,288 DEBUG Processing 369/871 atomic regions from SNP 110673 to 111273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,376 DEBUG Processing 344/918 atomic regions from SNP 103157 to 103757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,381 DEBUG Processing 139/659 atomic regions from SNP 41467 to 42067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,404 DEBUG Processing 272/1038 atomic regions from SNP 81475 to 82075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,429 DEBUG Processing 245/1146 atomic regions from SNP 73444 to 74045 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,493 DEBUG Processing 266/480 atomic regions from SNP 79722 to 80322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:10,525 DEBUG Processing 370/871 atomic regions from SNP 110973 to 111573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,626 DEBUG Processing 140/659 atomic regions from SNP 41767 to 42367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,629 DEBUG Processing 345/918 atomic regions from SNP 103457 to 104057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,703 DEBUG Processing 273/1038 atomic regions from SNP 81775 to 82375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,737 DEBUG Processing 246/1146 atomic regions from SNP 73745 to 74346 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,750 DEBUG Processing 267/480 atomic regions from SNP 80022 to 80622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:10,769 DEBUG Processing 371/871 atomic regions from SNP 111273 to 111873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,866 DEBUG Processing 141/659 atomic regions from SNP 42067 to 42667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,878 DEBUG Processing 346/918 atomic regions from SNP 103757 to 104357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,990 DEBUG Processing 274/1038 atomic regions from SNP 82075 to 82675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,008 DEBUG Processing 268/480 atomic regions from SNP 80322 to 80922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:11,012 DEBUG Processing 372/871 atomic regions from SNP 111573 to 112173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,036 DEBUG Processing 247/1146 atomic regions from SNP 74046 to 74647 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,111 DEBUG Processing 142/659 atomic regions from SNP 42367 to 42967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,129 DEBUG Processing 347/918 atomic regions from SNP 104057 to 104657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,255 DEBUG Processing 373/871 atomic regions from SNP 111873 to 112473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,262 DEBUG Processing 269/480 atomic regions from SNP 80622 to 81222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:11,277 DEBUG Processing 275/1038 atomic regions from SNP 82375 to 82975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,329 DEBUG Processing 248/1146 atomic regions from SNP 74347 to 74948 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,359 DEBUG Processing 143/659 atomic regions from SNP 42667 to 43267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,387 DEBUG Processing 348/918 atomic regions from SNP 104357 to 104957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,489 DEBUG Processing 374/871 atomic regions from SNP 112173 to 112773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,512 DEBUG Processing 270/480 atomic regions from SNP 80922 to 81522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:11,559 DEBUG Processing 276/1038 atomic regions from SNP 82675 to 83275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,603 DEBUG Processing 144/659 atomic regions from SNP 42967 to 43567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,626 DEBUG Processing 249/1146 atomic regions from SNP 74648 to 75249 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,640 DEBUG Processing 349/918 atomic regions from SNP 104657 to 105257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,727 DEBUG Processing 375/871 atomic regions from SNP 112473 to 113073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,756 DEBUG Processing 271/480 atomic regions from SNP 81222 to 81822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:11,838 DEBUG Processing 277/1038 atomic regions from SNP 82975 to 83575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,843 DEBUG Processing 145/659 atomic regions from SNP 43267 to 43867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,889 DEBUG Processing 350/918 atomic regions from SNP 104957 to 105557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,914 DEBUG Processing 250/1146 atomic regions from SNP 74949 to 75550 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,971 DEBUG Processing 376/871 atomic regions from SNP 112773 to 113373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,007 DEBUG Processing 272/480 atomic regions from SNP 81522 to 82122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:12,076 DEBUG Processing 146/659 atomic regions from SNP 43567 to 44167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,112 DEBUG Processing 278/1038 atomic regions from SNP 83275 to 83875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,136 DEBUG Processing 351/918 atomic regions from SNP 105257 to 105857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,195 DEBUG Processing 251/1146 atomic regions from SNP 75250 to 75851 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,210 DEBUG Processing 377/871 atomic regions from SNP 113073 to 113673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,257 DEBUG Processing 273/480 atomic regions from SNP 81822 to 82422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:12,304 DEBUG Processing 147/659 atomic regions from SNP 43867 to 44467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,377 DEBUG Processing 352/918 atomic regions from SNP 105557 to 106157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,385 DEBUG Processing 279/1038 atomic regions from SNP 83575 to 84175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,456 DEBUG Processing 378/871 atomic regions from SNP 113373 to 113973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,496 DEBUG Processing 252/1146 atomic regions from SNP 75551 to 76152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,527 DEBUG Processing 274/480 atomic regions from SNP 82122 to 82722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:12,537 DEBUG Processing 148/659 atomic regions from SNP 44167 to 44767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,616 DEBUG Processing 353/918 atomic regions from SNP 105857 to 106457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,669 DEBUG Processing 280/1038 atomic regions from SNP 83875 to 84475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,696 DEBUG Processing 379/871 atomic regions from SNP 113673 to 114273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,769 DEBUG Processing 275/480 atomic regions from SNP 82422 to 83022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:12,773 DEBUG Processing 149/659 atomic regions from SNP 44467 to 45067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,781 DEBUG Processing 253/1146 atomic regions from SNP 75852 to 76453 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,858 DEBUG Processing 354/918 atomic regions from SNP 106157 to 106757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,927 DEBUG Processing 380/871 atomic regions from SNP 113973 to 114573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,940 DEBUG Processing 281/1038 atomic regions from SNP 84175 to 84775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,007 DEBUG Processing 150/659 atomic regions from SNP 44767 to 45367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,017 DEBUG Processing 276/480 atomic regions from SNP 82722 to 83322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:13,073 DEBUG Processing 254/1146 atomic regions from SNP 76153 to 76754 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,109 DEBUG Processing 355/918 atomic regions from SNP 106457 to 107057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,161 DEBUG Processing 381/871 atomic regions from SNP 114273 to 114873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,227 DEBUG Processing 282/1038 atomic regions from SNP 84475 to 85075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,244 DEBUG Processing 151/659 atomic regions from SNP 45067 to 45667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,271 DEBUG Processing 277/480 atomic regions from SNP 83022 to 83622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:13,362 DEBUG Processing 356/918 atomic regions from SNP 106757 to 107357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,367 DEBUG Processing 255/1146 atomic regions from SNP 76454 to 77055 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,400 DEBUG Processing 382/871 atomic regions from SNP 114573 to 115173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,472 DEBUG Processing 152/659 atomic regions from SNP 45367 to 45967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,512 DEBUG Processing 283/1038 atomic regions from SNP 84775 to 85375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,518 DEBUG Processing 278/480 atomic regions from SNP 83322 to 83922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:13,612 DEBUG Processing 357/918 atomic regions from SNP 107057 to 107657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,642 DEBUG Processing 383/871 atomic regions from SNP 114873 to 115473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,652 DEBUG Processing 256/1146 atomic regions from SNP 76755 to 77356 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,701 DEBUG Processing 153/659 atomic regions from SNP 45667 to 46267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,762 DEBUG Processing 279/480 atomic regions from SNP 83622 to 84222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:13,790 DEBUG Processing 284/1038 atomic regions from SNP 85075 to 85675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,856 DEBUG Processing 358/918 atomic regions from SNP 107357 to 107957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,881 DEBUG Processing 384/871 atomic regions from SNP 115173 to 115773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,935 DEBUG Processing 257/1146 atomic regions from SNP 77056 to 77657 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,936 DEBUG Processing 154/659 atomic regions from SNP 45967 to 46567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,008 DEBUG Processing 280/480 atomic regions from SNP 83922 to 84522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:14,069 DEBUG Processing 285/1038 atomic regions from SNP 85375 to 85975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,099 DEBUG Processing 359/918 atomic regions from SNP 107657 to 108257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,121 DEBUG Processing 385/871 atomic regions from SNP 115473 to 116073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,175 DEBUG Processing 155/659 atomic regions from SNP 46267 to 46867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,218 DEBUG Processing 258/1146 atomic regions from SNP 77357 to 77958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,256 DEBUG Processing 281/480 atomic regions from SNP 84222 to 84822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:14,344 DEBUG Processing 360/918 atomic regions from SNP 107957 to 108557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,353 DEBUG Processing 286/1038 atomic regions from SNP 85675 to 86275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,362 DEBUG Processing 386/871 atomic regions from SNP 115773 to 116373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,415 DEBUG Processing 156/659 atomic regions from SNP 46567 to 47167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,498 DEBUG Processing 282/480 atomic regions from SNP 84522 to 85122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:14,502 DEBUG Processing 259/1146 atomic regions from SNP 77658 to 78259 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,592 DEBUG Processing 361/918 atomic regions from SNP 108257 to 108857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,608 DEBUG Processing 387/871 atomic regions from SNP 116073 to 116673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,636 DEBUG Processing 287/1038 atomic regions from SNP 85975 to 86575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,657 DEBUG Processing 157/659 atomic regions from SNP 46867 to 47467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,739 DEBUG Processing 283/480 atomic regions from SNP 84822 to 85422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:14,785 DEBUG Processing 260/1146 atomic regions from SNP 77959 to 78560 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,859 DEBUG Processing 388/871 atomic regions from SNP 116373 to 116973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,865 DEBUG Processing 362/918 atomic regions from SNP 108557 to 109157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,903 DEBUG Processing 158/659 atomic regions from SNP 47167 to 47767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,929 DEBUG Processing 288/1038 atomic regions from SNP 86275 to 86875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,979 DEBUG Processing 284/480 atomic regions from SNP 85122 to 85722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:15,066 DEBUG Processing 261/1146 atomic regions from SNP 78260 to 78861 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,102 DEBUG Processing 389/871 atomic regions from SNP 116673 to 117273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,126 DEBUG Processing 363/918 atomic regions from SNP 108857 to 109457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,146 DEBUG Processing 159/659 atomic regions from SNP 47467 to 48067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,219 DEBUG Processing 289/1038 atomic regions from SNP 86575 to 87175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,223 DEBUG Processing 285/480 atomic regions from SNP 85422 to 86022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:15,335 DEBUG Processing 390/871 atomic regions from SNP 116973 to 117573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,346 DEBUG Processing 262/1146 atomic regions from SNP 78561 to 79162 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,366 DEBUG Processing 364/918 atomic regions from SNP 109157 to 109757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,380 DEBUG Processing 160/659 atomic regions from SNP 47767 to 48367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,472 DEBUG Processing 286/480 atomic regions from SNP 85722 to 86322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:15,502 DEBUG Processing 290/1038 atomic regions from SNP 86875 to 87475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,569 DEBUG Processing 391/871 atomic regions from SNP 117273 to 117873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,606 DEBUG Processing 365/918 atomic regions from SNP 109457 to 110057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,613 DEBUG Processing 161/659 atomic regions from SNP 48067 to 48667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,634 DEBUG Processing 263/1146 atomic regions from SNP 78862 to 79463 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,722 DEBUG Processing 287/480 atomic regions from SNP 86022 to 86622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:15,783 DEBUG Processing 291/1038 atomic regions from SNP 87175 to 87775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,809 DEBUG Processing 392/871 atomic regions from SNP 117573 to 118173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,850 DEBUG Processing 162/659 atomic regions from SNP 48367 to 48967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,853 DEBUG Processing 366/918 atomic regions from SNP 109757 to 110357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,923 DEBUG Processing 264/1146 atomic regions from SNP 79163 to 79764 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,973 DEBUG Processing 288/480 atomic regions from SNP 86322 to 86922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:16,058 DEBUG Processing 393/871 atomic regions from SNP 117873 to 118473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,073 DEBUG Processing 292/1038 atomic regions from SNP 87475 to 88075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,094 DEBUG Processing 163/659 atomic regions from SNP 48667 to 49267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,108 DEBUG Processing 367/918 atomic regions from SNP 110057 to 110657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,205 DEBUG Processing 265/1146 atomic regions from SNP 79464 to 80065 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,211 DEBUG Processing 289/480 atomic regions from SNP 86622 to 87222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:16,303 DEBUG Processing 394/871 atomic regions from SNP 118173 to 118773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,337 DEBUG Processing 164/659 atomic regions from SNP 48967 to 49567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,357 DEBUG Processing 293/1038 atomic regions from SNP 87775 to 88375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,359 DEBUG Processing 368/918 atomic regions from SNP 110357 to 110957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,448 DEBUG Processing 290/480 atomic regions from SNP 86922 to 87522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:16,487 DEBUG Processing 266/1146 atomic regions from SNP 79765 to 80366 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,545 DEBUG Processing 395/871 atomic regions from SNP 118473 to 119073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,579 DEBUG Processing 165/659 atomic regions from SNP 49267 to 49867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,609 DEBUG Processing 369/918 atomic regions from SNP 110657 to 111257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,645 DEBUG Processing 294/1038 atomic regions from SNP 88075 to 88675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,695 DEBUG Processing 291/480 atomic regions from SNP 87222 to 87822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:16,773 DEBUG Processing 267/1146 atomic regions from SNP 80066 to 80667 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,778 DEBUG Processing 396/871 atomic regions from SNP 118773 to 119373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,815 DEBUG Processing 166/659 atomic regions from SNP 49567 to 50167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,858 DEBUG Processing 370/918 atomic regions from SNP 110957 to 111557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,930 DEBUG Processing 295/1038 atomic regions from SNP 88375 to 88975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,944 DEBUG Processing 292/480 atomic regions from SNP 87522 to 88122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:17,010 DEBUG Processing 397/871 atomic regions from SNP 119073 to 119673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,050 DEBUG Processing 167/659 atomic regions from SNP 49867 to 50467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,055 DEBUG Processing 268/1146 atomic regions from SNP 80367 to 80968 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,123 DEBUG Processing 371/918 atomic regions from SNP 111257 to 111857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,195 DEBUG Processing 293/480 atomic regions from SNP 87822 to 88422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:17,212 DEBUG Processing 296/1038 atomic regions from SNP 88675 to 89275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,246 DEBUG Processing 398/871 atomic regions from SNP 119373 to 119973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,289 DEBUG Processing 168/659 atomic regions from SNP 50167 to 50767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,349 DEBUG Processing 269/1146 atomic regions from SNP 80668 to 81269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,396 DEBUG Processing 372/918 atomic regions from SNP 111557 to 112157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,461 DEBUG Processing 294/480 atomic regions from SNP 88122 to 88722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:17,528 DEBUG Processing 399/871 atomic regions from SNP 119673 to 120273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,533 DEBUG Processing 297/1038 atomic regions from SNP 88975 to 89575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,581 DEBUG Processing 169/659 atomic regions from SNP 50467 to 51067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,724 DEBUG Processing 373/918 atomic regions from SNP 111857 to 112457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,769 DEBUG Processing 270/1146 atomic regions from SNP 80969 to 81570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,913 DEBUG Processing 295/480 atomic regions from SNP 88422 to 89022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:17,953 DEBUG Processing 400/871 atomic regions from SNP 119973 to 120573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,977 DEBUG Processing 298/1038 atomic regions from SNP 89275 to 89875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,996 DEBUG Processing 170/659 atomic regions from SNP 50767 to 51367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,094 DEBUG Processing 374/918 atomic regions from SNP 112157 to 112757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,164 DEBUG Processing 271/1146 atomic regions from SNP 81270 to 81871 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,207 DEBUG Processing 296/480 atomic regions from SNP 88722 to 89322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:18,227 DEBUG Processing 401/871 atomic regions from SNP 120273 to 120873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,262 DEBUG Processing 171/659 atomic regions from SNP 51067 to 51667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,276 DEBUG Processing 299/1038 atomic regions from SNP 89575 to 90175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,415 DEBUG Processing 375/918 atomic regions from SNP 112457 to 113057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,540 DEBUG Processing 402/871 atomic regions from SNP 120573 to 121173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,558 DEBUG Processing 172/659 atomic regions from SNP 51367 to 51967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,559 DEBUG Processing 272/1146 atomic regions from SNP 81571 to 82172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,569 DEBUG Processing 297/480 atomic regions from SNP 89022 to 89622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:18,657 DEBUG Processing 300/1038 atomic regions from SNP 89875 to 90475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,715 DEBUG Processing 376/918 atomic regions from SNP 112757 to 113357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,803 DEBUG Processing 403/871 atomic regions from SNP 120873 to 121473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,807 DEBUG Processing 173/659 atomic regions from SNP 51667 to 52267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,820 DEBUG Processing 298/480 atomic regions from SNP 89322 to 89922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:18,858 DEBUG Processing 273/1146 atomic regions from SNP 81872 to 82473 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,925 DEBUG Processing 301/1038 atomic regions from SNP 90175 to 90775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,967 DEBUG Processing 377/918 atomic regions from SNP 113057 to 113657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,057 DEBUG Processing 174/659 atomic regions from SNP 51967 to 52567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,060 DEBUG Processing 404/871 atomic regions from SNP 121173 to 121773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,070 DEBUG Processing 299/480 atomic regions from SNP 89622 to 90222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:19,166 DEBUG Processing 274/1146 atomic regions from SNP 82173 to 82774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,204 DEBUG Processing 302/1038 atomic regions from SNP 90475 to 91075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,228 DEBUG Processing 378/918 atomic regions from SNP 113357 to 113957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,298 DEBUG Processing 175/659 atomic regions from SNP 52267 to 52867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,299 DEBUG Processing 300/480 atomic regions from SNP 89922 to 90522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:19,314 DEBUG Processing 405/871 atomic regions from SNP 121473 to 122073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,455 DEBUG Processing 275/1146 atomic regions from SNP 82474 to 83075 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,473 DEBUG Processing 303/1038 atomic regions from SNP 90775 to 91375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,481 DEBUG Processing 379/918 atomic regions from SNP 113657 to 114257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,530 DEBUG Processing 301/480 atomic regions from SNP 90222 to 90822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:19,537 DEBUG Processing 176/659 atomic regions from SNP 52567 to 53167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,567 DEBUG Processing 406/871 atomic regions from SNP 121773 to 122373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,751 DEBUG Processing 304/1038 atomic regions from SNP 91075 to 91675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,755 DEBUG Processing 276/1146 atomic regions from SNP 82775 to 83376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,765 DEBUG Processing 380/918 atomic regions from SNP 113957 to 114557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,779 DEBUG Processing 302/480 atomic regions from SNP 90522 to 91122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:19,792 DEBUG Processing 177/659 atomic regions from SNP 52867 to 53467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,839 DEBUG Processing 407/871 atomic regions from SNP 122073 to 122673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,020 DEBUG Processing 305/1038 atomic regions from SNP 91375 to 91975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,029 DEBUG Processing 381/918 atomic regions from SNP 114257 to 114857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,035 DEBUG Processing 303/480 atomic regions from SNP 90822 to 91422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:20,036 DEBUG Processing 178/659 atomic regions from SNP 53167 to 53767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,061 DEBUG Processing 277/1146 atomic regions from SNP 83076 to 83677 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,115 DEBUG Processing 408/871 atomic regions from SNP 122373 to 122973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,279 DEBUG Processing 179/659 atomic regions from SNP 53467 to 54067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,298 DEBUG Processing 306/1038 atomic regions from SNP 91675 to 92275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,302 DEBUG Processing 382/918 atomic regions from SNP 114557 to 115157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,302 DEBUG Processing 304/480 atomic regions from SNP 91122 to 91722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:20,369 DEBUG Processing 278/1146 atomic regions from SNP 83377 to 83978 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,392 DEBUG Processing 409/871 atomic regions from SNP 122673 to 123273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,513 DEBUG Processing 180/659 atomic regions from SNP 53767 to 54367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,556 DEBUG Processing 383/918 atomic regions from SNP 114857 to 115457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,567 DEBUG Processing 307/1038 atomic regions from SNP 91975 to 92575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,583 DEBUG Processing 305/480 atomic regions from SNP 91422 to 92022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:20,635 DEBUG Processing 410/871 atomic regions from SNP 122973 to 123573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,666 DEBUG Processing 279/1146 atomic regions from SNP 83678 to 84279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,747 DEBUG Processing 181/659 atomic regions from SNP 54067 to 54667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,803 DEBUG Processing 384/918 atomic regions from SNP 115157 to 115757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,832 DEBUG Processing 308/1038 atomic regions from SNP 92275 to 92875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,840 DEBUG Processing 306/480 atomic regions from SNP 91722 to 92322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:20,871 DEBUG Processing 411/871 atomic regions from SNP 123273 to 123873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,961 DEBUG Processing 280/1146 atomic regions from SNP 83979 to 84579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,982 DEBUG Processing 182/659 atomic regions from SNP 54367 to 54967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,045 DEBUG Processing 385/918 atomic regions from SNP 115457 to 116057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,095 DEBUG Processing 309/1038 atomic regions from SNP 92575 to 93175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,109 DEBUG Processing 307/480 atomic regions from SNP 92022 to 92622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:21,124 DEBUG Processing 412/871 atomic regions from SNP 123573 to 124173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,218 DEBUG Processing 183/659 atomic regions from SNP 54667 to 55267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,252 DEBUG Processing 281/1146 atomic regions from SNP 84279 to 84879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,286 DEBUG Processing 386/918 atomic regions from SNP 115757 to 116357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,353 DEBUG Processing 310/1038 atomic regions from SNP 92875 to 93475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,369 DEBUG Processing 308/480 atomic regions from SNP 92322 to 92922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:21,375 DEBUG Processing 413/871 atomic regions from SNP 123873 to 124473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,449 DEBUG Processing 184/659 atomic regions from SNP 54967 to 55567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,526 DEBUG Processing 387/918 atomic regions from SNP 116057 to 116657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,537 DEBUG Processing 282/1146 atomic regions from SNP 84579 to 85179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,597 DEBUG Processing 309/480 atomic regions from SNP 92622 to 93222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:21,606 DEBUG Processing 414/871 atomic regions from SNP 124173 to 124773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,610 DEBUG Processing 311/1038 atomic regions from SNP 93175 to 93775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,675 DEBUG Processing 185/659 atomic regions from SNP 55267 to 55867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,769 DEBUG Processing 388/918 atomic regions from SNP 116357 to 116957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,818 DEBUG Processing 283/1146 atomic regions from SNP 84879 to 85479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,831 DEBUG Processing 310/480 atomic regions from SNP 92922 to 93522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:21,841 DEBUG Processing 415/871 atomic regions from SNP 124473 to 125073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,874 DEBUG Processing 312/1038 atomic regions from SNP 93475 to 94075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,909 DEBUG Processing 186/659 atomic regions from SNP 55567 to 56167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,012 DEBUG Processing 389/918 atomic regions from SNP 116657 to 117257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,067 DEBUG Processing 311/480 atomic regions from SNP 93222 to 93822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:22,081 DEBUG Processing 416/871 atomic regions from SNP 124773 to 125373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,101 DEBUG Processing 284/1146 atomic regions from SNP 85179 to 85779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,141 DEBUG Processing 313/1038 atomic regions from SNP 93775 to 94375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,146 DEBUG Processing 187/659 atomic regions from SNP 55867 to 56467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,253 DEBUG Processing 390/918 atomic regions from SNP 116957 to 117557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,309 DEBUG Processing 312/480 atomic regions from SNP 93522 to 94122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:22,326 DEBUG Processing 417/871 atomic regions from SNP 125073 to 125673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,389 DEBUG Processing 285/1146 atomic regions from SNP 85479 to 86079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,393 DEBUG Processing 188/659 atomic regions from SNP 56167 to 56767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,422 DEBUG Processing 314/1038 atomic regions from SNP 94075 to 94675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,491 DEBUG Processing 391/918 atomic regions from SNP 117257 to 117857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,544 DEBUG Processing 313/480 atomic regions from SNP 93822 to 94422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:22,567 DEBUG Processing 418/871 atomic regions from SNP 125373 to 125973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,630 DEBUG Processing 189/659 atomic regions from SNP 56467 to 57067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,674 DEBUG Processing 286/1146 atomic regions from SNP 85779 to 86379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,688 DEBUG Processing 315/1038 atomic regions from SNP 94375 to 94975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,731 DEBUG Processing 392/918 atomic regions from SNP 117557 to 118157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,787 DEBUG Processing 314/480 atomic regions from SNP 94122 to 94722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:22,806 DEBUG Processing 419/871 atomic regions from SNP 125673 to 126273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,858 DEBUG Processing 190/659 atomic regions from SNP 56767 to 57367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,953 DEBUG Processing 316/1038 atomic regions from SNP 94675 to 95275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,958 DEBUG Processing 287/1146 atomic regions from SNP 86079 to 86679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,977 DEBUG Processing 393/918 atomic regions from SNP 117857 to 118457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,036 DEBUG Processing 315/480 atomic regions from SNP 94422 to 95022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:23,046 DEBUG Processing 420/871 atomic regions from SNP 125973 to 126573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,089 DEBUG Processing 191/659 atomic regions from SNP 57067 to 57667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,221 DEBUG Processing 317/1038 atomic regions from SNP 94975 to 95575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,231 DEBUG Processing 394/918 atomic regions from SNP 118157 to 118757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,263 DEBUG Processing 288/1146 atomic regions from SNP 86379 to 86979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,280 DEBUG Processing 316/480 atomic regions from SNP 94722 to 95322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:23,292 DEBUG Processing 421/871 atomic regions from SNP 126273 to 126873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,317 DEBUG Processing 192/659 atomic regions from SNP 57367 to 57967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,475 DEBUG Processing 395/918 atomic regions from SNP 118457 to 119057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,487 DEBUG Processing 318/1038 atomic regions from SNP 95275 to 95875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,538 DEBUG Processing 422/871 atomic regions from SNP 126573 to 127173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,546 DEBUG Processing 317/480 atomic regions from SNP 95022 to 95622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:23,553 DEBUG Processing 193/659 atomic regions from SNP 57667 to 58267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,581 DEBUG Processing 289/1146 atomic regions from SNP 86679 to 87279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,713 DEBUG Processing 396/918 atomic regions from SNP 118757 to 119357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,743 DEBUG Processing 319/1038 atomic regions from SNP 95575 to 96175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,777 DEBUG Processing 423/871 atomic regions from SNP 126873 to 127473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,789 DEBUG Processing 194/659 atomic regions from SNP 57967 to 58567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,822 DEBUG Processing 318/480 atomic regions from SNP 95322 to 95922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:23,884 DEBUG Processing 290/1146 atomic regions from SNP 86979 to 87579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,953 DEBUG Processing 397/918 atomic regions from SNP 119057 to 119657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,010 DEBUG Processing 320/1038 atomic regions from SNP 95875 to 96475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,022 DEBUG Processing 424/871 atomic regions from SNP 127173 to 127773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,033 DEBUG Processing 195/659 atomic regions from SNP 58267 to 58867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,093 DEBUG Processing 319/480 atomic regions from SNP 95622 to 96222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:24,177 DEBUG Processing 291/1146 atomic regions from SNP 87279 to 87879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,190 DEBUG Processing 398/918 atomic regions from SNP 119357 to 119957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,275 DEBUG Processing 196/659 atomic regions from SNP 58567 to 59167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,275 DEBUG Processing 425/871 atomic regions from SNP 127473 to 128073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,277 DEBUG Processing 321/1038 atomic regions from SNP 96175 to 96775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,357 DEBUG Processing 320/480 atomic regions from SNP 95922 to 96522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:24,431 DEBUG Processing 399/918 atomic regions from SNP 119657 to 120257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,480 DEBUG Processing 292/1146 atomic regions from SNP 87579 to 88179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,519 DEBUG Processing 197/659 atomic regions from SNP 58867 to 59467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,533 DEBUG Processing 426/871 atomic regions from SNP 127773 to 128373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,555 DEBUG Processing 322/1038 atomic regions from SNP 96475 to 97075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,611 DEBUG Processing 321/480 atomic regions from SNP 96222 to 96822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:24,672 DEBUG Processing 400/918 atomic regions from SNP 119957 to 120557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,756 DEBUG Processing 198/659 atomic regions from SNP 59167 to 59767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,771 DEBUG Processing 293/1146 atomic regions from SNP 87879 to 88479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,774 DEBUG Processing 427/871 atomic regions from SNP 128073 to 128673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,820 DEBUG Processing 323/1038 atomic regions from SNP 96775 to 97375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,865 DEBUG Processing 322/480 atomic regions from SNP 96522 to 97122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:24,915 DEBUG Processing 401/918 atomic regions from SNP 120257 to 120857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,989 DEBUG Processing 199/659 atomic regions from SNP 59467 to 60067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,014 DEBUG Processing 428/871 atomic regions from SNP 128373 to 128973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,052 DEBUG Processing 294/1146 atomic regions from SNP 88179 to 88779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,084 DEBUG Processing 324/1038 atomic regions from SNP 97075 to 97675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,121 DEBUG Processing 323/480 atomic regions from SNP 96822 to 97422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:25,164 DEBUG Processing 402/918 atomic regions from SNP 120557 to 121157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,229 DEBUG Processing 200/659 atomic regions from SNP 59767 to 60367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,262 DEBUG Processing 429/871 atomic regions from SNP 128673 to 129273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,340 DEBUG Processing 295/1146 atomic regions from SNP 88479 to 89079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,345 DEBUG Processing 325/1038 atomic regions from SNP 97375 to 97975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,381 DEBUG Processing 324/480 atomic regions from SNP 97122 to 97722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:25,413 DEBUG Processing 403/918 atomic regions from SNP 120857 to 121457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,465 DEBUG Processing 201/659 atomic regions from SNP 60067 to 60667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,516 DEBUG Processing 430/871 atomic regions from SNP 128973 to 129573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,617 DEBUG Processing 326/1038 atomic regions from SNP 97675 to 98275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,619 DEBUG Processing 325/480 atomic regions from SNP 97422 to 98022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:25,626 DEBUG Processing 296/1146 atomic regions from SNP 88779 to 89379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,658 DEBUG Processing 404/918 atomic regions from SNP 121157 to 121757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,697 DEBUG Processing 202/659 atomic regions from SNP 60367 to 60967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,771 DEBUG Processing 431/871 atomic regions from SNP 129273 to 129873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,861 DEBUG Processing 326/480 atomic regions from SNP 97722 to 98322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:25,881 DEBUG Processing 327/1038 atomic regions from SNP 97975 to 98575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,897 DEBUG Processing 405/918 atomic regions from SNP 121457 to 122057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,901 DEBUG Processing 297/1146 atomic regions from SNP 89079 to 89679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,931 DEBUG Processing 203/659 atomic regions from SNP 60667 to 61267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,030 DEBUG Processing 432/871 atomic regions from SNP 129573 to 130173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,100 DEBUG Processing 327/480 atomic regions from SNP 98022 to 98622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:26,139 DEBUG Processing 406/918 atomic regions from SNP 121757 to 122357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,143 DEBUG Processing 328/1038 atomic regions from SNP 98275 to 98875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,164 DEBUG Processing 204/659 atomic regions from SNP 60967 to 61567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,180 DEBUG Processing 298/1146 atomic regions from SNP 89379 to 89979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,276 DEBUG Processing 433/871 atomic regions from SNP 129873 to 130473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,343 DEBUG Processing 328/480 atomic regions from SNP 98322 to 98922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:26,390 DEBUG Processing 407/918 atomic regions from SNP 122057 to 122657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,406 DEBUG Processing 205/659 atomic regions from SNP 61267 to 61867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,414 DEBUG Processing 329/1038 atomic regions from SNP 98575 to 99175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,470 DEBUG Processing 299/1146 atomic regions from SNP 89679 to 90279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,506 DEBUG Processing 434/871 atomic regions from SNP 130173 to 130773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,604 DEBUG Processing 329/480 atomic regions from SNP 98622 to 99222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:26,643 DEBUG Processing 408/918 atomic regions from SNP 122357 to 122957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,652 DEBUG Processing 206/659 atomic regions from SNP 61567 to 62167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,692 DEBUG Processing 330/1038 atomic regions from SNP 98875 to 99475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,747 DEBUG Processing 435/871 atomic regions from SNP 130473 to 131073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,756 DEBUG Processing 300/1146 atomic regions from SNP 89979 to 90579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,848 DEBUG Processing 330/480 atomic regions from SNP 98922 to 99522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:26,906 DEBUG Processing 207/659 atomic regions from SNP 61867 to 62467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,913 DEBUG Processing 409/918 atomic regions from SNP 122657 to 123257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,991 DEBUG Processing 331/1038 atomic regions from SNP 99175 to 99775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,010 DEBUG Processing 436/871 atomic regions from SNP 130773 to 131373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,053 DEBUG Processing 301/1146 atomic regions from SNP 90279 to 90879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,131 DEBUG Processing 331/480 atomic regions from SNP 99222 to 99822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:27,235 DEBUG Processing 208/659 atomic regions from SNP 62167 to 62767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,242 DEBUG Processing 410/918 atomic regions from SNP 122957 to 123557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,320 DEBUG Processing 437/871 atomic regions from SNP 131073 to 131673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,343 DEBUG Processing 332/1038 atomic regions from SNP 99475 to 100075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,415 DEBUG Processing 302/1146 atomic regions from SNP 90579 to 91179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,444 DEBUG Processing 332/480 atomic regions from SNP 99522 to 100122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:27,597 DEBUG Processing 209/659 atomic regions from SNP 62467 to 63067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,624 DEBUG Processing 411/918 atomic regions from SNP 123257 to 123857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,709 DEBUG Processing 438/871 atomic regions from SNP 131373 to 131973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,797 DEBUG Processing 333/1038 atomic regions from SNP 99775 to 100375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,828 DEBUG Processing 333/480 atomic regions from SNP 99822 to 100422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:27,858 DEBUG Processing 303/1146 atomic regions from SNP 90879 to 91479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,033 DEBUG Processing 210/659 atomic regions from SNP 62767 to 63367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,049 DEBUG Processing 412/918 atomic regions from SNP 123557 to 124157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,149 DEBUG Processing 439/871 atomic regions from SNP 131673 to 132273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,280 DEBUG Processing 334/480 atomic regions from SNP 100122 to 100722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:28,298 DEBUG Processing 334/1038 atomic regions from SNP 100075 to 100675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,352 DEBUG Processing 304/1146 atomic regions from SNP 91179 to 91779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,385 DEBUG Processing 211/659 atomic regions from SNP 63067 to 63667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,405 DEBUG Processing 413/918 atomic regions from SNP 123857 to 124457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,455 DEBUG Processing 440/871 atomic regions from SNP 131973 to 132573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,551 DEBUG Processing 335/480 atomic regions from SNP 100422 to 101022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:28,628 DEBUG Processing 335/1038 atomic regions from SNP 100375 to 100975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,695 DEBUG Processing 212/659 atomic regions from SNP 63367 to 63967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,712 DEBUG Processing 305/1146 atomic regions from SNP 91479 to 92079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,719 DEBUG Processing 414/918 atomic regions from SNP 124157 to 124757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,767 DEBUG Processing 441/871 atomic regions from SNP 132273 to 132873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,871 DEBUG Processing 336/480 atomic regions from SNP 100722 to 101322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:29,031 DEBUG Processing 336/1038 atomic regions from SNP 100675 to 101275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,074 DEBUG Processing 213/659 atomic regions from SNP 63667 to 64267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,093 DEBUG Processing 415/918 atomic regions from SNP 124457 to 125057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,106 DEBUG Processing 442/871 atomic regions from SNP 132573 to 133173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,128 DEBUG Processing 306/1146 atomic regions from SNP 91779 to 92379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,171 DEBUG Processing 337/480 atomic regions from SNP 101022 to 101622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:29,327 DEBUG Processing 337/1038 atomic regions from SNP 100975 to 101575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,342 DEBUG Processing 214/659 atomic regions from SNP 63967 to 64567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,365 DEBUG Processing 416/918 atomic regions from SNP 124757 to 125357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,365 DEBUG Processing 443/871 atomic regions from SNP 132873 to 133473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,430 DEBUG Processing 338/480 atomic regions from SNP 101322 to 101922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:29,450 DEBUG Processing 307/1146 atomic regions from SNP 92079 to 92679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,615 DEBUG Processing 215/659 atomic regions from SNP 64267 to 64867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,643 DEBUG Processing 338/1038 atomic regions from SNP 101275 to 101875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,653 DEBUG Processing 444/871 atomic regions from SNP 133173 to 133773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,654 DEBUG Processing 417/918 atomic regions from SNP 125057 to 125657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,790 DEBUG Processing 339/480 atomic regions from SNP 101622 to 102222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:29,852 DEBUG Processing 308/1146 atomic regions from SNP 92379 to 92979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,905 DEBUG Processing 216/659 atomic regions from SNP 64567 to 65167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,924 DEBUG Processing 445/871 atomic regions from SNP 133473 to 134073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,932 DEBUG Processing 418/918 atomic regions from SNP 125357 to 125957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,946 DEBUG Processing 339/1038 atomic regions from SNP 101575 to 102175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,079 DEBUG Processing 340/480 atomic regions from SNP 101922 to 102522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:30,188 DEBUG Processing 309/1146 atomic regions from SNP 92679 to 93279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,212 DEBUG Processing 217/659 atomic regions from SNP 64867 to 65467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,231 DEBUG Processing 446/871 atomic regions from SNP 133773 to 134373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,233 DEBUG Processing 419/918 atomic regions from SNP 125657 to 126257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,315 DEBUG Processing 340/1038 atomic regions from SNP 101875 to 102475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,386 DEBUG Processing 341/480 atomic regions from SNP 102222 to 102822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:30,579 DEBUG Processing 218/659 atomic regions from SNP 65167 to 65767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,579 DEBUG Processing 447/871 atomic regions from SNP 134073 to 134673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,583 DEBUG Processing 420/918 atomic regions from SNP 125957 to 126557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,615 DEBUG Processing 310/1146 atomic regions from SNP 92979 to 93579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,756 DEBUG Processing 342/480 atomic regions from SNP 102522 to 103122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:30,781 DEBUG Processing 341/1038 atomic regions from SNP 102175 to 102775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,959 DEBUG Processing 219/659 atomic regions from SNP 65467 to 66067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,978 DEBUG Processing 448/871 atomic regions from SNP 134373 to 134973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,980 DEBUG Processing 421/918 atomic regions from SNP 126257 to 126857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,025 DEBUG Processing 311/1146 atomic regions from SNP 93279 to 93879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,065 DEBUG Processing 343/480 atomic regions from SNP 102822 to 103422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:31,110 DEBUG Processing 342/1038 atomic regions from SNP 102475 to 103075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,258 DEBUG Processing 220/659 atomic regions from SNP 65767 to 66367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,283 DEBUG Processing 422/918 atomic regions from SNP 126557 to 127157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,289 DEBUG Processing 449/871 atomic regions from SNP 134673 to 135273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,364 DEBUG Processing 312/1146 atomic regions from SNP 93579 to 94179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,368 DEBUG Processing 344/480 atomic regions from SNP 103122 to 103722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:31,404 DEBUG Processing 343/1038 atomic regions from SNP 102775 to 103375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,596 DEBUG Processing 221/659 atomic regions from SNP 66067 to 66667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,608 DEBUG Processing 423/918 atomic regions from SNP 126857 to 127457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,649 DEBUG Processing 450/871 atomic regions from SNP 134973 to 135573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,719 DEBUG Processing 345/480 atomic regions from SNP 103422 to 104022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:31,737 DEBUG Processing 344/1038 atomic regions from SNP 103075 to 103675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,756 DEBUG Processing 313/1146 atomic regions from SNP 93879 to 94479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,839 DEBUG Processing 222/659 atomic regions from SNP 66367 to 66967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,855 DEBUG Processing 424/918 atomic regions from SNP 127157 to 127757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,902 DEBUG Processing 451/871 atomic regions from SNP 135273 to 135873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,981 DEBUG Processing 346/480 atomic regions from SNP 103722 to 104322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:32,002 DEBUG Processing 345/1038 atomic regions from SNP 103375 to 103975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,035 DEBUG Processing 314/1146 atomic regions from SNP 94179 to 94779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,070 DEBUG Processing 223/659 atomic regions from SNP 66667 to 67267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,099 DEBUG Processing 425/918 atomic regions from SNP 127457 to 128057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,142 DEBUG Processing 452/871 atomic regions from SNP 135573 to 136173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,253 DEBUG Processing 347/480 atomic regions from SNP 104022 to 104622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:32,265 DEBUG Processing 346/1038 atomic regions from SNP 103675 to 104275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,310 DEBUG Processing 224/659 atomic regions from SNP 66967 to 67567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,324 DEBUG Processing 315/1146 atomic regions from SNP 94479 to 95079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,350 DEBUG Processing 426/918 atomic regions from SNP 127757 to 128357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,384 DEBUG Processing 453/871 atomic regions from SNP 135873 to 136473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,533 DEBUG Processing 348/480 atomic regions from SNP 104322 to 104922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:32,536 DEBUG Processing 347/1038 atomic regions from SNP 103975 to 104575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,554 DEBUG Processing 225/659 atomic regions from SNP 67267 to 67867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,604 DEBUG Processing 427/918 atomic regions from SNP 128057 to 128657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,621 DEBUG Processing 454/871 atomic regions from SNP 136173 to 136773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,621 DEBUG Processing 316/1146 atomic regions from SNP 94779 to 95379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,802 DEBUG Processing 226/659 atomic regions from SNP 67567 to 68167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,808 DEBUG Processing 348/1038 atomic regions from SNP 104275 to 104875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,808 DEBUG Processing 349/480 atomic regions from SNP 104622 to 105222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:32,854 DEBUG Processing 428/918 atomic regions from SNP 128357 to 128957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,859 DEBUG Processing 455/871 atomic regions from SNP 136473 to 137073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,909 DEBUG Processing 317/1146 atomic regions from SNP 95079 to 95679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,039 DEBUG Processing 227/659 atomic regions from SNP 67867 to 68467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,080 DEBUG Processing 349/1038 atomic regions from SNP 104575 to 105175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,084 DEBUG Processing 350/480 atomic regions from SNP 104922 to 105522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:33,107 DEBUG Processing 456/871 atomic regions from SNP 136773 to 137373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,109 DEBUG Processing 429/918 atomic regions from SNP 128657 to 129257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,193 DEBUG Processing 318/1146 atomic regions from SNP 95379 to 95979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,268 DEBUG Processing 228/659 atomic regions from SNP 68167 to 68767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,342 DEBUG Processing 351/480 atomic regions from SNP 105222 to 105822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:33,352 DEBUG Processing 350/1038 atomic regions from SNP 104875 to 105475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,358 DEBUG Processing 457/871 atomic regions from SNP 137073 to 137673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,365 DEBUG Processing 430/918 atomic regions from SNP 128957 to 129557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,475 DEBUG Processing 319/1146 atomic regions from SNP 95679 to 96279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,499 DEBUG Processing 229/659 atomic regions from SNP 68467 to 69067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,586 DEBUG Processing 352/480 atomic regions from SNP 105522 to 106122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:33,598 DEBUG Processing 458/871 atomic regions from SNP 137373 to 137973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,612 DEBUG Processing 431/918 atomic regions from SNP 129257 to 129857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,622 DEBUG Processing 351/1038 atomic regions from SNP 105175 to 105775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,724 DEBUG Processing 230/659 atomic regions from SNP 68767 to 69367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,752 DEBUG Processing 320/1146 atomic regions from SNP 95979 to 96579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,821 DEBUG Processing 353/480 atomic regions from SNP 105822 to 106422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:33,834 DEBUG Processing 459/871 atomic regions from SNP 137673 to 138273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,853 DEBUG Processing 432/918 atomic regions from SNP 129557 to 130157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,887 DEBUG Processing 352/1038 atomic regions from SNP 105475 to 106075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,960 DEBUG Processing 231/659 atomic regions from SNP 69067 to 69667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,026 DEBUG Processing 321/1146 atomic regions from SNP 96279 to 96879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,059 DEBUG Processing 354/480 atomic regions from SNP 106122 to 106722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:34,068 DEBUG Processing 460/871 atomic regions from SNP 137973 to 138573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,093 DEBUG Processing 433/918 atomic regions from SNP 129857 to 130457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,149 DEBUG Processing 353/1038 atomic regions from SNP 105775 to 106375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,196 DEBUG Processing 232/659 atomic regions from SNP 69367 to 69967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,299 DEBUG Processing 461/871 atomic regions from SNP 138273 to 138873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,304 DEBUG Processing 322/1146 atomic regions from SNP 96579 to 97179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,321 DEBUG Processing 355/480 atomic regions from SNP 106422 to 107022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:34,334 DEBUG Processing 434/918 atomic regions from SNP 130157 to 130757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,415 DEBUG Processing 354/1038 atomic regions from SNP 106075 to 106675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,427 DEBUG Processing 233/659 atomic regions from SNP 69667 to 70267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,528 DEBUG Processing 462/871 atomic regions from SNP 138573 to 139173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,569 DEBUG Processing 435/918 atomic regions from SNP 130457 to 131057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,574 DEBUG Processing 356/480 atomic regions from SNP 106722 to 107322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:34,587 DEBUG Processing 323/1146 atomic regions from SNP 96879 to 97479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,656 DEBUG Processing 234/659 atomic regions from SNP 69967 to 70567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,676 DEBUG Processing 355/1038 atomic regions from SNP 106375 to 106975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,761 DEBUG Processing 463/871 atomic regions from SNP 138873 to 139473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,808 DEBUG Processing 436/918 atomic regions from SNP 130757 to 131357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,830 DEBUG Processing 357/480 atomic regions from SNP 107022 to 107622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:34,875 DEBUG Processing 324/1146 atomic regions from SNP 97179 to 97779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,887 DEBUG Processing 235/659 atomic regions from SNP 70267 to 70867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,939 DEBUG Processing 356/1038 atomic regions from SNP 106675 to 107275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,995 DEBUG Processing 464/871 atomic regions from SNP 139173 to 139773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,048 DEBUG Processing 437/918 atomic regions from SNP 131057 to 131657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,064 DEBUG Processing 358/480 atomic regions from SNP 107322 to 107922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:35,115 DEBUG Processing 236/659 atomic regions from SNP 70567 to 71167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,168 DEBUG Processing 325/1146 atomic regions from SNP 97479 to 98079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,200 DEBUG Processing 357/1038 atomic regions from SNP 106975 to 107575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,233 DEBUG Processing 465/871 atomic regions from SNP 139473 to 140073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,291 DEBUG Processing 438/918 atomic regions from SNP 131357 to 131957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,309 DEBUG Processing 359/480 atomic regions from SNP 107622 to 108222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:35,342 DEBUG Processing 237/659 atomic regions from SNP 70867 to 71467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,464 DEBUG Processing 358/1038 atomic regions from SNP 107275 to 107875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,472 DEBUG Processing 326/1146 atomic regions from SNP 97779 to 98379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,474 DEBUG Processing 466/871 atomic regions from SNP 139773 to 140373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,540 DEBUG Processing 439/918 atomic regions from SNP 131657 to 132257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,568 DEBUG Processing 360/480 atomic regions from SNP 107922 to 108522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:35,570 DEBUG Processing 238/659 atomic regions from SNP 71167 to 71767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,718 DEBUG Processing 467/871 atomic regions from SNP 140073 to 140673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,730 DEBUG Processing 359/1038 atomic regions from SNP 107575 to 108175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,754 DEBUG Processing 327/1146 atomic regions from SNP 98079 to 98679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,788 DEBUG Processing 440/918 atomic regions from SNP 131957 to 132557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,800 DEBUG Processing 239/659 atomic regions from SNP 71467 to 72067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,825 DEBUG Processing 361/480 atomic regions from SNP 108222 to 108822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:35,957 DEBUG Processing 468/871 atomic regions from SNP 140373 to 140973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,996 DEBUG Processing 360/1038 atomic regions from SNP 107875 to 108475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,038 DEBUG Processing 240/659 atomic regions from SNP 71767 to 72367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,044 DEBUG Processing 328/1146 atomic regions from SNP 98379 to 98979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,054 DEBUG Processing 441/918 atomic regions from SNP 132257 to 132857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,078 DEBUG Processing 362/480 atomic regions from SNP 108522 to 109122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:36,185 DEBUG Processing 469/871 atomic regions from SNP 140673 to 141273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,256 DEBUG Processing 361/1038 atomic regions from SNP 108175 to 108775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,274 DEBUG Processing 241/659 atomic regions from SNP 72067 to 72667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,317 DEBUG Processing 442/918 atomic regions from SNP 132557 to 133157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,332 DEBUG Processing 329/1146 atomic regions from SNP 98679 to 99279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,342 DEBUG Processing 363/480 atomic regions from SNP 108822 to 109422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:36,414 DEBUG Processing 470/871 atomic regions from SNP 140973 to 141573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,506 DEBUG Processing 242/659 atomic regions from SNP 72367 to 72967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,516 DEBUG Processing 362/1038 atomic regions from SNP 108475 to 109075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,571 DEBUG Processing 443/918 atomic regions from SNP 132857 to 133457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,598 DEBUG Processing 364/480 atomic regions from SNP 109122 to 109722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:36,626 DEBUG Processing 330/1146 atomic regions from SNP 98979 to 99579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,657 DEBUG Processing 471/871 atomic regions from SNP 141273 to 141873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,738 DEBUG Processing 243/659 atomic regions from SNP 72667 to 73267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,781 DEBUG Processing 363/1038 atomic regions from SNP 108775 to 109375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,821 DEBUG Processing 444/918 atomic regions from SNP 133157 to 133757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,867 DEBUG Processing 365/480 atomic regions from SNP 109422 to 110022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:36,901 DEBUG Processing 472/871 atomic regions from SNP 141573 to 142173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,938 DEBUG Processing 331/1146 atomic regions from SNP 99279 to 99879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,979 DEBUG Processing 244/659 atomic regions from SNP 72967 to 73567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,053 DEBUG Processing 364/1038 atomic regions from SNP 109075 to 109675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,066 DEBUG Processing 445/918 atomic regions from SNP 133457 to 134057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,130 DEBUG Processing 366/480 atomic regions from SNP 109722 to 110322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:37,144 DEBUG Processing 473/871 atomic regions from SNP 141873 to 142473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,219 DEBUG Processing 245/659 atomic regions from SNP 73267 to 73867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,246 DEBUG Processing 332/1146 atomic regions from SNP 99579 to 100179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,307 DEBUG Processing 446/918 atomic regions from SNP 133757 to 134357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,315 DEBUG Processing 365/1038 atomic regions from SNP 109375 to 109975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,375 DEBUG Processing 367/480 atomic regions from SNP 110022 to 110622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:37,383 DEBUG Processing 474/871 atomic regions from SNP 142173 to 142773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,453 DEBUG Processing 246/659 atomic regions from SNP 73567 to 74167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,538 DEBUG Processing 333/1146 atomic regions from SNP 99879 to 100479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,550 DEBUG Processing 447/918 atomic regions from SNP 134057 to 134657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,581 DEBUG Processing 366/1038 atomic regions from SNP 109675 to 110275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,613 DEBUG Processing 368/480 atomic regions from SNP 110322 to 110922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:37,619 DEBUG Processing 475/871 atomic regions from SNP 142473 to 143073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,689 DEBUG Processing 247/659 atomic regions from SNP 73867 to 74467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,792 DEBUG Processing 448/918 atomic regions from SNP 134357 to 134957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,824 DEBUG Processing 334/1146 atomic regions from SNP 100179 to 100779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,845 DEBUG Processing 367/1038 atomic regions from SNP 109975 to 110575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,856 DEBUG Processing 476/871 atomic regions from SNP 142773 to 143373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,858 DEBUG Processing 369/480 atomic regions from SNP 110622 to 111222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:37,924 DEBUG Processing 248/659 atomic regions from SNP 74167 to 74767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,031 DEBUG Processing 449/918 atomic regions from SNP 134657 to 135257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,092 DEBUG Processing 477/871 atomic regions from SNP 143073 to 143673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,093 DEBUG Processing 370/480 atomic regions from SNP 110922 to 111522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:38,109 DEBUG Processing 368/1038 atomic regions from SNP 110275 to 110875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,117 DEBUG Processing 335/1146 atomic regions from SNP 100479 to 101079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,157 DEBUG Processing 249/659 atomic regions from SNP 74467 to 75067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,269 DEBUG Processing 450/918 atomic regions from SNP 134957 to 135557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,328 DEBUG Processing 478/871 atomic regions from SNP 143373 to 143973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,330 DEBUG Processing 371/480 atomic regions from SNP 111222 to 111822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:38,374 DEBUG Processing 369/1038 atomic regions from SNP 110575 to 111175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,397 DEBUG Processing 250/659 atomic regions from SNP 74767 to 75367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,422 DEBUG Processing 336/1146 atomic regions from SNP 100779 to 101379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,507 DEBUG Processing 451/918 atomic regions from SNP 135257 to 135857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,567 DEBUG Processing 479/871 atomic regions from SNP 143673 to 144273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,580 DEBUG Processing 372/480 atomic regions from SNP 111522 to 112122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:38,637 DEBUG Processing 370/1038 atomic regions from SNP 110875 to 111475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,649 DEBUG Processing 251/659 atomic regions from SNP 75067 to 75667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,711 DEBUG Processing 337/1146 atomic regions from SNP 101079 to 101679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,746 DEBUG Processing 452/918 atomic regions from SNP 135557 to 136157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,806 DEBUG Processing 480/871 atomic regions from SNP 143973 to 144573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,848 DEBUG Processing 373/480 atomic regions from SNP 111822 to 112422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:38,890 DEBUG Processing 252/659 atomic regions from SNP 75367 to 75967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,896 DEBUG Processing 371/1038 atomic regions from SNP 111175 to 111775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,981 DEBUG Processing 453/918 atomic regions from SNP 135857 to 136457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,983 DEBUG Processing 338/1146 atomic regions from SNP 101379 to 101979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,040 DEBUG Processing 481/871 atomic regions from SNP 144273 to 144873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,107 DEBUG Processing 374/480 atomic regions from SNP 112122 to 112722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:39,130 DEBUG Processing 253/659 atomic regions from SNP 75667 to 76267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,160 DEBUG Processing 372/1038 atomic regions from SNP 111475 to 112075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,230 DEBUG Processing 454/918 atomic regions from SNP 136157 to 136757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,267 DEBUG Processing 339/1146 atomic regions from SNP 101679 to 102279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,274 DEBUG Processing 482/871 atomic regions from SNP 144573 to 145173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,355 DEBUG Processing 375/480 atomic regions from SNP 112422 to 113022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:39,363 DEBUG Processing 254/659 atomic regions from SNP 75967 to 76567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,431 DEBUG Processing 373/1038 atomic regions from SNP 111775 to 112375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,479 DEBUG Processing 455/918 atomic regions from SNP 136457 to 137057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,509 DEBUG Processing 483/871 atomic regions from SNP 144873 to 145473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,552 DEBUG Processing 340/1146 atomic regions from SNP 101979 to 102579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,598 DEBUG Processing 255/659 atomic regions from SNP 76267 to 76867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,605 DEBUG Processing 376/480 atomic regions from SNP 112722 to 113322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:39,710 DEBUG Processing 374/1038 atomic regions from SNP 112075 to 112675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,735 DEBUG Processing 456/918 atomic regions from SNP 136757 to 137357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,755 DEBUG Processing 484/871 atomic regions from SNP 145173 to 145773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,839 DEBUG Processing 256/659 atomic regions from SNP 76567 to 77167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,839 DEBUG Processing 341/1146 atomic regions from SNP 102279 to 102879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,848 DEBUG Processing 377/480 atomic regions from SNP 113022 to 113622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:39,985 DEBUG Processing 375/1038 atomic regions from SNP 112375 to 112975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,989 DEBUG Processing 457/918 atomic regions from SNP 137057 to 137657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,004 DEBUG Processing 485/871 atomic regions from SNP 145473 to 146073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,087 DEBUG Processing 257/659 atomic regions from SNP 76867 to 77467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,098 DEBUG Processing 378/480 atomic regions from SNP 113322 to 113922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:40,131 DEBUG Processing 342/1146 atomic regions from SNP 102579 to 103179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,243 DEBUG Processing 458/918 atomic regions from SNP 137357 to 137957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,256 DEBUG Processing 486/871 atomic regions from SNP 145773 to 146373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,273 DEBUG Processing 376/1038 atomic regions from SNP 112675 to 113275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,345 DEBUG Processing 258/659 atomic regions from SNP 77167 to 77767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,355 DEBUG Processing 379/480 atomic regions from SNP 113622 to 114222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:40,428 DEBUG Processing 343/1146 atomic regions from SNP 102879 to 103479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,500 DEBUG Processing 459/918 atomic regions from SNP 137657 to 138257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,507 DEBUG Processing 487/871 atomic regions from SNP 146073 to 146673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,560 DEBUG Processing 377/1038 atomic regions from SNP 112975 to 113575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,601 DEBUG Processing 380/480 atomic regions from SNP 113922 to 114522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:40,605 DEBUG Processing 259/659 atomic regions from SNP 77467 to 78067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,712 DEBUG Processing 344/1146 atomic regions from SNP 103179 to 103779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,759 DEBUG Processing 460/918 atomic regions from SNP 137957 to 138557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,760 DEBUG Processing 488/871 atomic regions from SNP 146373 to 146973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,841 DEBUG Processing 378/1038 atomic regions from SNP 113275 to 113875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,857 DEBUG Processing 381/480 atomic regions from SNP 114222 to 114822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:40,865 DEBUG Processing 260/659 atomic regions from SNP 77767 to 78367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,006 DEBUG Processing 345/1146 atomic regions from SNP 103479 to 104079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,023 DEBUG Processing 489/871 atomic regions from SNP 146673 to 147273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,025 DEBUG Processing 461/918 atomic regions from SNP 138257 to 138857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,117 DEBUG Processing 382/480 atomic regions from SNP 114522 to 115122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:41,122 DEBUG Processing 261/659 atomic regions from SNP 78067 to 78667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,131 DEBUG Processing 379/1038 atomic regions from SNP 113575 to 114175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,294 DEBUG Processing 490/871 atomic regions from SNP 146973 to 147573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,298 DEBUG Processing 462/918 atomic regions from SNP 138557 to 139157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,299 DEBUG Processing 346/1146 atomic regions from SNP 103779 to 104379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,369 DEBUG Processing 262/659 atomic regions from SNP 78367 to 78967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,372 DEBUG Processing 383/480 atomic regions from SNP 114822 to 115422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:41,408 DEBUG Processing 380/1038 atomic regions from SNP 113875 to 114475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,540 DEBUG Processing 491/871 atomic regions from SNP 147273 to 147873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,550 DEBUG Processing 463/918 atomic regions from SNP 138857 to 139457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,592 DEBUG Processing 347/1146 atomic regions from SNP 104079 to 104679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,612 DEBUG Processing 263/659 atomic regions from SNP 78667 to 79267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,627 DEBUG Processing 384/480 atomic regions from SNP 115122 to 115722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:41,688 DEBUG Processing 381/1038 atomic regions from SNP 114175 to 114775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,788 DEBUG Processing 492/871 atomic regions from SNP 147573 to 148173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,804 DEBUG Processing 464/918 atomic regions from SNP 139157 to 139757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,854 DEBUG Processing 264/659 atomic regions from SNP 78967 to 79567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,885 DEBUG Processing 385/480 atomic regions from SNP 115422 to 116022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:41,889 DEBUG Processing 348/1146 atomic regions from SNP 104379 to 104979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,966 DEBUG Processing 382/1038 atomic regions from SNP 114475 to 115075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,038 DEBUG Processing 493/871 atomic regions from SNP 147873 to 148473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,060 DEBUG Processing 465/918 atomic regions from SNP 139457 to 140057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,095 DEBUG Processing 265/659 atomic regions from SNP 79267 to 79867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,142 DEBUG Processing 386/480 atomic regions from SNP 115722 to 116322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:42,190 DEBUG Processing 349/1146 atomic regions from SNP 104679 to 105279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,240 DEBUG Processing 383/1038 atomic regions from SNP 114775 to 115375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,283 DEBUG Processing 494/871 atomic regions from SNP 148173 to 148773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,313 DEBUG Processing 466/918 atomic regions from SNP 139757 to 140357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,341 DEBUG Processing 266/659 atomic regions from SNP 79567 to 80167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,412 DEBUG Processing 387/480 atomic regions from SNP 116022 to 116622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:42,483 DEBUG Processing 350/1146 atomic regions from SNP 104979 to 105579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,509 DEBUG Processing 384/1038 atomic regions from SNP 115075 to 115675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,525 DEBUG Processing 495/871 atomic regions from SNP 148473 to 149073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,570 DEBUG Processing 467/918 atomic regions from SNP 140057 to 140657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,585 DEBUG Processing 267/659 atomic regions from SNP 79867 to 80467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,685 DEBUG Processing 388/480 atomic regions from SNP 116322 to 116922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:42,776 DEBUG Processing 496/871 atomic regions from SNP 148773 to 149373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,781 DEBUG Processing 351/1146 atomic regions from SNP 105279 to 105879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,789 DEBUG Processing 385/1038 atomic regions from SNP 115375 to 115975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,835 DEBUG Processing 268/659 atomic regions from SNP 80167 to 80767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,848 DEBUG Processing 468/918 atomic regions from SNP 140357 to 140957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,962 DEBUG Processing 389/480 atomic regions from SNP 116622 to 117222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:43,029 DEBUG Processing 497/871 atomic regions from SNP 149073 to 149673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,065 DEBUG Processing 386/1038 atomic regions from SNP 115675 to 116275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,079 DEBUG Processing 269/659 atomic regions from SNP 80467 to 81067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,100 DEBUG Processing 352/1146 atomic regions from SNP 105579 to 106179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,116 DEBUG Processing 469/918 atomic regions from SNP 140657 to 141257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,217 DEBUG Processing 390/480 atomic regions from SNP 116922 to 117522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:43,290 DEBUG Processing 498/871 atomic regions from SNP 149373 to 149973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,335 DEBUG Processing 270/659 atomic regions from SNP 80767 to 81367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,351 DEBUG Processing 387/1038 atomic regions from SNP 115975 to 116575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,400 DEBUG Processing 470/918 atomic regions from SNP 140957 to 141557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,430 DEBUG Processing 353/1146 atomic regions from SNP 105879 to 106479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,466 DEBUG Processing 391/480 atomic regions from SNP 117222 to 117822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:43,525 DEBUG Processing 499/871 atomic regions from SNP 149673 to 150273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,578 DEBUG Processing 271/659 atomic regions from SNP 81067 to 81667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,627 DEBUG Processing 388/1038 atomic regions from SNP 116275 to 116875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,679 DEBUG Processing 471/918 atomic regions from SNP 141257 to 141857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,714 DEBUG Processing 392/480 atomic regions from SNP 117522 to 118122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:43,743 DEBUG Processing 354/1146 atomic regions from SNP 106179 to 106779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,771 DEBUG Processing 500/871 atomic regions from SNP 149973 to 150573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,817 DEBUG Processing 272/659 atomic regions from SNP 81367 to 81967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,902 DEBUG Processing 389/1038 atomic regions from SNP 116575 to 117175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,952 DEBUG Processing 472/918 atomic regions from SNP 141557 to 142157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,966 DEBUG Processing 393/480 atomic regions from SNP 117822 to 118422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:44,010 DEBUG Processing 501/871 atomic regions from SNP 150273 to 150873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,056 DEBUG Processing 273/659 atomic regions from SNP 81667 to 82267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,067 DEBUG Processing 355/1146 atomic regions from SNP 106479 to 107079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,171 DEBUG Processing 390/1038 atomic regions from SNP 116875 to 117475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,208 DEBUG Processing 473/918 atomic regions from SNP 141857 to 142457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,215 DEBUG Processing 394/480 atomic regions from SNP 118122 to 118722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:44,253 DEBUG Processing 502/871 atomic regions from SNP 150573 to 151173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,296 DEBUG Processing 274/659 atomic regions from SNP 81967 to 82567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,367 DEBUG Processing 356/1146 atomic regions from SNP 106779 to 107379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,436 DEBUG Processing 391/1038 atomic regions from SNP 117175 to 117775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,448 DEBUG Processing 474/918 atomic regions from SNP 142157 to 142757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,456 DEBUG Processing 395/480 atomic regions from SNP 118422 to 119022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:44,489 DEBUG Processing 503/871 atomic regions from SNP 150873 to 151473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,533 DEBUG Processing 275/659 atomic regions from SNP 82267 to 82867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,646 DEBUG Processing 357/1146 atomic regions from SNP 107079 to 107679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,698 DEBUG Processing 475/918 atomic regions from SNP 142457 to 143057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,698 DEBUG Processing 392/1038 atomic regions from SNP 117475 to 118075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,701 DEBUG Processing 396/480 atomic regions from SNP 118722 to 119322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:44,729 DEBUG Processing 504/871 atomic regions from SNP 151173 to 151773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,770 DEBUG Processing 276/659 atomic regions from SNP 82567 to 83167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,935 DEBUG Processing 358/1146 atomic regions from SNP 107379 to 107979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,948 DEBUG Processing 397/480 atomic regions from SNP 119022 to 119622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:44,952 DEBUG Processing 476/918 atomic regions from SNP 142757 to 143357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,967 DEBUG Processing 393/1038 atomic regions from SNP 117775 to 118375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,971 DEBUG Processing 505/871 atomic regions from SNP 151473 to 152073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,002 DEBUG Processing 277/659 atomic regions from SNP 82867 to 83467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,194 DEBUG Processing 398/480 atomic regions from SNP 119322 to 119922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:45,214 DEBUG Processing 477/918 atomic regions from SNP 143057 to 143657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,217 DEBUG Processing 506/871 atomic regions from SNP 151773 to 152373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,227 DEBUG Processing 359/1146 atomic regions from SNP 107679 to 108279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,240 DEBUG Processing 278/659 atomic regions from SNP 83167 to 83767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,241 DEBUG Processing 394/1038 atomic regions from SNP 118075 to 118675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,434 DEBUG Processing 399/480 atomic regions from SNP 119622 to 120222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:45,467 DEBUG Processing 507/871 atomic regions from SNP 152073 to 152673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,485 DEBUG Processing 279/659 atomic regions from SNP 83467 to 84067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,491 DEBUG Processing 478/918 atomic regions from SNP 143357 to 143957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,515 DEBUG Processing 360/1146 atomic regions from SNP 107979 to 108579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,521 DEBUG Processing 395/1038 atomic regions from SNP 118375 to 118975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,666 DEBUG Processing 400/480 atomic regions from SNP 119922 to 120522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:45,707 DEBUG Processing 508/871 atomic regions from SNP 152373 to 152973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,729 DEBUG Processing 280/659 atomic regions from SNP 83767 to 84367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,776 DEBUG Processing 479/918 atomic regions from SNP 143657 to 144257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,794 DEBUG Processing 396/1038 atomic regions from SNP 118675 to 119275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,821 DEBUG Processing 361/1146 atomic regions from SNP 108279 to 108879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,899 DEBUG Processing 401/480 atomic regions from SNP 120222 to 120822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:45,943 DEBUG Processing 509/871 atomic regions from SNP 152673 to 153273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,964 DEBUG Processing 281/659 atomic regions from SNP 84067 to 84667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,063 DEBUG Processing 480/918 atomic regions from SNP 143957 to 144557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,074 DEBUG Processing 397/1038 atomic regions from SNP 118975 to 119575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,117 DEBUG Processing 362/1146 atomic regions from SNP 108579 to 109179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,134 DEBUG Processing 402/480 atomic regions from SNP 120522 to 121122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:46,174 DEBUG Processing 510/871 atomic regions from SNP 152973 to 153573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,195 DEBUG Processing 282/659 atomic regions from SNP 84367 to 84967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,342 DEBUG Processing 398/1038 atomic regions from SNP 119275 to 119875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,343 DEBUG Processing 481/918 atomic regions from SNP 144257 to 144857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,378 DEBUG Processing 403/480 atomic regions from SNP 120822 to 121422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:46,414 DEBUG Processing 511/871 atomic regions from SNP 153273 to 153873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,417 DEBUG Processing 363/1146 atomic regions from SNP 108879 to 109479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,436 DEBUG Processing 283/659 atomic regions from SNP 84667 to 85267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,602 DEBUG Processing 399/1038 atomic regions from SNP 119575 to 120175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,606 DEBUG Processing 482/918 atomic regions from SNP 144557 to 145157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,610 DEBUG Processing 404/480 atomic regions from SNP 121122 to 121722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:46,653 DEBUG Processing 512/871 atomic regions from SNP 153573 to 154173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,675 DEBUG Processing 284/659 atomic regions from SNP 84967 to 85567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,729 DEBUG Processing 364/1146 atomic regions from SNP 109179 to 109779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,842 DEBUG Processing 405/480 atomic regions from SNP 121422 to 122022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:46,856 DEBUG Processing 483/918 atomic regions from SNP 144857 to 145457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,873 DEBUG Processing 400/1038 atomic regions from SNP 119875 to 120475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,898 DEBUG Processing 513/871 atomic regions from SNP 153873 to 154473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,920 DEBUG Processing 285/659 atomic regions from SNP 85267 to 85867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,042 DEBUG Processing 365/1146 atomic regions from SNP 109479 to 110079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,076 DEBUG Processing 406/480 atomic regions from SNP 121722 to 122322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:47,125 DEBUG Processing 484/918 atomic regions from SNP 145157 to 145757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,143 DEBUG Processing 514/871 atomic regions from SNP 154173 to 154773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,144 DEBUG Processing 401/1038 atomic regions from SNP 120175 to 120775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,163 DEBUG Processing 286/659 atomic regions from SNP 85567 to 86167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,309 DEBUG Processing 407/480 atomic regions from SNP 122022 to 122622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:47,345 DEBUG Processing 366/1146 atomic regions from SNP 109779 to 110379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,388 DEBUG Processing 515/871 atomic regions from SNP 154473 to 155073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,398 DEBUG Processing 485/918 atomic regions from SNP 145457 to 146057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,408 DEBUG Processing 287/659 atomic regions from SNP 85867 to 86467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,420 DEBUG Processing 402/1038 atomic regions from SNP 120475 to 121075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,547 DEBUG Processing 408/480 atomic regions from SNP 122322 to 122922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:47,630 DEBUG Processing 516/871 atomic regions from SNP 154773 to 155373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,645 DEBUG Processing 367/1146 atomic regions from SNP 110079 to 110679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,651 DEBUG Processing 288/659 atomic regions from SNP 86167 to 86767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,672 DEBUG Processing 486/918 atomic regions from SNP 145757 to 146357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,717 DEBUG Processing 403/1038 atomic regions from SNP 120775 to 121375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,777 DEBUG Processing 409/480 atomic regions from SNP 122622 to 123222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:47,882 DEBUG Processing 517/871 atomic regions from SNP 155073 to 155673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,906 DEBUG Processing 289/659 atomic regions from SNP 86467 to 87067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,950 DEBUG Processing 368/1146 atomic regions from SNP 110379 to 110979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,953 DEBUG Processing 487/918 atomic regions from SNP 146057 to 146657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,998 DEBUG Processing 404/1038 atomic regions from SNP 121075 to 121675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,008 DEBUG Processing 410/480 atomic regions from SNP 122922 to 123522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:48,137 DEBUG Processing 518/871 atomic regions from SNP 155373 to 155973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,146 DEBUG Processing 290/659 atomic regions from SNP 86767 to 87367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,221 DEBUG Processing 488/918 atomic regions from SNP 146357 to 146957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,236 DEBUG Processing 369/1146 atomic regions from SNP 110679 to 111279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,243 DEBUG Processing 411/480 atomic regions from SNP 123222 to 123822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:48,285 DEBUG Processing 405/1038 atomic regions from SNP 121375 to 121975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,378 DEBUG Processing 291/659 atomic regions from SNP 87067 to 87667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,397 DEBUG Processing 519/871 atomic regions from SNP 155673 to 156273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,470 DEBUG Processing 489/918 atomic regions from SNP 146657 to 147257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,482 DEBUG Processing 412/480 atomic regions from SNP 123522 to 124122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:48,518 DEBUG Processing 370/1146 atomic regions from SNP 110979 to 111579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,562 DEBUG Processing 406/1038 atomic regions from SNP 121675 to 122275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,609 DEBUG Processing 292/659 atomic regions from SNP 87367 to 87967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,653 DEBUG Processing 520/871 atomic regions from SNP 155973 to 156573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,725 DEBUG Processing 413/480 atomic regions from SNP 123822 to 124422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:48,736 DEBUG Processing 490/918 atomic regions from SNP 146957 to 147557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,804 DEBUG Processing 371/1146 atomic regions from SNP 111279 to 111879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,831 DEBUG Processing 407/1038 atomic regions from SNP 121975 to 122575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,848 DEBUG Processing 293/659 atomic regions from SNP 87667 to 88267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,905 DEBUG Processing 521/871 atomic regions from SNP 156273 to 156873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,968 DEBUG Processing 414/480 atomic regions from SNP 124122 to 124722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:49,009 DEBUG Processing 491/918 atomic regions from SNP 147257 to 147857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,091 DEBUG Processing 294/659 atomic regions from SNP 87967 to 88567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,092 DEBUG Processing 372/1146 atomic regions from SNP 111579 to 112179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,111 DEBUG Processing 408/1038 atomic regions from SNP 122275 to 122875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,153 DEBUG Processing 522/871 atomic regions from SNP 156573 to 157173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,208 DEBUG Processing 415/480 atomic regions from SNP 124422 to 125022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:49,291 DEBUG Processing 492/918 atomic regions from SNP 147557 to 148157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,338 DEBUG Processing 295/659 atomic regions from SNP 88267 to 88867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,380 DEBUG Processing 373/1146 atomic regions from SNP 111879 to 112479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,393 DEBUG Processing 409/1038 atomic regions from SNP 122575 to 123175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,404 DEBUG Processing 523/871 atomic regions from SNP 156873 to 157473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,447 DEBUG Processing 416/480 atomic regions from SNP 124722 to 125322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:49,573 DEBUG Processing 493/918 atomic regions from SNP 147857 to 148457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,576 DEBUG Processing 296/659 atomic regions from SNP 88567 to 89167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,656 DEBUG Processing 524/871 atomic regions from SNP 157173 to 157773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,660 DEBUG Processing 374/1146 atomic regions from SNP 112179 to 112779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,684 DEBUG Processing 410/1038 atomic regions from SNP 122875 to 123475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,686 DEBUG Processing 417/480 atomic regions from SNP 125022 to 125622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:49,811 DEBUG Processing 297/659 atomic regions from SNP 88867 to 89467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,853 DEBUG Processing 494/918 atomic regions from SNP 148157 to 148757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,903 DEBUG Processing 525/871 atomic regions from SNP 157473 to 158073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,925 DEBUG Processing 418/480 atomic regions from SNP 125322 to 125922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:49,939 DEBUG Processing 375/1146 atomic regions from SNP 112479 to 113079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,970 DEBUG Processing 411/1038 atomic regions from SNP 123175 to 123775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,041 DEBUG Processing 298/659 atomic regions from SNP 89167 to 89767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,129 DEBUG Processing 526/871 atomic regions from SNP 157773 to 158373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,132 DEBUG Processing 495/918 atomic regions from SNP 148457 to 149057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,168 DEBUG Processing 419/480 atomic regions from SNP 125622 to 126222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:50,225 DEBUG Processing 376/1146 atomic regions from SNP 112779 to 113379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,246 DEBUG Processing 412/1038 atomic regions from SNP 123475 to 124075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,278 DEBUG Processing 299/659 atomic regions from SNP 89467 to 90067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,356 DEBUG Processing 527/871 atomic regions from SNP 158073 to 158673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,408 DEBUG Processing 496/918 atomic regions from SNP 148757 to 149357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,420 DEBUG Processing 420/480 atomic regions from SNP 125922 to 126522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:50,524 DEBUG Processing 300/659 atomic regions from SNP 89767 to 90367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,529 DEBUG Processing 377/1146 atomic regions from SNP 113079 to 113679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,546 DEBUG Processing 413/1038 atomic regions from SNP 123775 to 124375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,589 DEBUG Processing 528/871 atomic regions from SNP 158373 to 158973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,668 DEBUG Processing 421/480 atomic regions from SNP 126222 to 126822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:50,692 DEBUG Processing 497/918 atomic regions from SNP 149057 to 149657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,778 DEBUG Processing 301/659 atomic regions from SNP 90067 to 90667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,826 DEBUG Processing 378/1146 atomic regions from SNP 113379 to 113979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,826 DEBUG Processing 529/871 atomic regions from SNP 158673 to 159273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,836 DEBUG Processing 414/1038 atomic regions from SNP 124075 to 124675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,917 DEBUG Processing 422/480 atomic regions from SNP 126522 to 127122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:50,975 DEBUG Processing 498/918 atomic regions from SNP 149357 to 149957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,015 DEBUG Processing 302/659 atomic regions from SNP 90367 to 90967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,069 DEBUG Processing 530/871 atomic regions from SNP 158973 to 159573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,117 DEBUG Processing 379/1146 atomic regions from SNP 113679 to 114279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,118 DEBUG Processing 415/1038 atomic regions from SNP 124375 to 124975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,164 DEBUG Processing 423/480 atomic regions from SNP 126822 to 127422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:51,246 DEBUG Processing 303/659 atomic regions from SNP 90667 to 91267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,250 DEBUG Processing 499/918 atomic regions from SNP 149657 to 150257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,309 DEBUG Processing 531/871 atomic regions from SNP 159273 to 159873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,393 DEBUG Processing 416/1038 atomic regions from SNP 124675 to 125275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,402 DEBUG Processing 380/1146 atomic regions from SNP 113979 to 114579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,412 DEBUG Processing 424/480 atomic regions from SNP 127122 to 127722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:51,476 DEBUG Processing 304/659 atomic regions from SNP 90967 to 91567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,536 DEBUG Processing 500/918 atomic regions from SNP 149957 to 150557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,555 DEBUG Processing 532/871 atomic regions from SNP 159573 to 160173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,664 DEBUG Processing 425/480 atomic regions from SNP 127422 to 128022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:51,671 DEBUG Processing 417/1038 atomic regions from SNP 124975 to 125575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,696 DEBUG Processing 381/1146 atomic regions from SNP 114279 to 114879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,711 DEBUG Processing 305/659 atomic regions from SNP 91267 to 91867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,805 DEBUG Processing 533/871 atomic regions from SNP 159873 to 160473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,824 DEBUG Processing 501/918 atomic regions from SNP 150257 to 150857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,916 DEBUG Processing 426/480 atomic regions from SNP 127722 to 128322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:51,940 DEBUG Processing 306/659 atomic regions from SNP 91567 to 92167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,951 DEBUG Processing 418/1038 atomic regions from SNP 125275 to 125875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,990 DEBUG Processing 382/1146 atomic regions from SNP 114579 to 115179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,057 DEBUG Processing 534/871 atomic regions from SNP 160173 to 160773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,108 DEBUG Processing 502/918 atomic regions from SNP 150557 to 151157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,166 DEBUG Processing 427/480 atomic regions from SNP 128022 to 128622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:52,181 DEBUG Processing 307/659 atomic regions from SNP 91867 to 92467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,234 DEBUG Processing 419/1038 atomic regions from SNP 125575 to 126175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,278 DEBUG Processing 383/1146 atomic regions from SNP 114879 to 115479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,315 DEBUG Processing 535/871 atomic regions from SNP 160473 to 161073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,394 DEBUG Processing 503/918 atomic regions from SNP 150857 to 151457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,420 DEBUG Processing 428/480 atomic regions from SNP 128322 to 128922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:52,420 DEBUG Processing 308/659 atomic regions from SNP 92167 to 92767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,520 DEBUG Processing 420/1038 atomic regions from SNP 125875 to 126475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,563 DEBUG Processing 536/871 atomic regions from SNP 160773 to 161373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,570 DEBUG Processing 384/1146 atomic regions from SNP 115179 to 115779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,672 DEBUG Processing 309/659 atomic regions from SNP 92467 to 93067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,674 DEBUG Processing 429/480 atomic regions from SNP 128622 to 129222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:52,688 DEBUG Processing 504/918 atomic regions from SNP 151157 to 151757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,804 DEBUG Processing 421/1038 atomic regions from SNP 126175 to 126775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,808 DEBUG Processing 537/871 atomic regions from SNP 161073 to 161673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,868 DEBUG Processing 385/1146 atomic regions from SNP 115479 to 116079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,920 DEBUG Processing 310/659 atomic regions from SNP 92767 to 93367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,925 DEBUG Processing 430/480 atomic regions from SNP 128922 to 129522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:52,977 DEBUG Processing 505/918 atomic regions from SNP 151457 to 152057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,055 DEBUG Processing 538/871 atomic regions from SNP 161373 to 161973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,084 DEBUG Processing 422/1038 atomic regions from SNP 126475 to 127075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,159 DEBUG Processing 386/1146 atomic regions from SNP 115779 to 116379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,162 DEBUG Processing 311/659 atomic regions from SNP 93067 to 93667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,165 DEBUG Processing 431/480 atomic regions from SNP 129222 to 129822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:53,260 DEBUG Processing 506/918 atomic regions from SNP 151757 to 152357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,294 DEBUG Processing 539/871 atomic regions from SNP 161673 to 162273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,372 DEBUG Processing 423/1038 atomic regions from SNP 126775 to 127375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,393 DEBUG Processing 312/659 atomic regions from SNP 93367 to 93967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,403 DEBUG Processing 432/480 atomic regions from SNP 129522 to 130122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:53,439 DEBUG Processing 387/1146 atomic regions from SNP 116079 to 116679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,531 DEBUG Processing 540/871 atomic regions from SNP 161973 to 162573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,538 DEBUG Processing 507/918 atomic regions from SNP 152057 to 152657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,632 DEBUG Processing 313/659 atomic regions from SNP 93667 to 94267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,648 DEBUG Processing 433/480 atomic regions from SNP 129822 to 130422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:53,653 DEBUG Processing 424/1038 atomic regions from SNP 127075 to 127675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,722 DEBUG Processing 388/1146 atomic regions from SNP 116379 to 116979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,771 DEBUG Processing 541/871 atomic regions from SNP 162273 to 162873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,822 DEBUG Processing 508/918 atomic regions from SNP 152357 to 152957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,870 DEBUG Processing 314/659 atomic regions from SNP 93967 to 94567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,883 DEBUG Processing 434/480 atomic regions from SNP 130122 to 130722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:53,938 DEBUG Processing 425/1038 atomic regions from SNP 127375 to 127975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,002 DEBUG Processing 389/1146 atomic regions from SNP 116679 to 117279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,013 DEBUG Processing 542/871 atomic regions from SNP 162573 to 163173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,107 DEBUG Processing 315/659 atomic regions from SNP 94267 to 94867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,108 DEBUG Processing 509/918 atomic regions from SNP 152657 to 153257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,120 DEBUG Processing 435/480 atomic regions from SNP 130422 to 131022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:54,233 DEBUG Processing 426/1038 atomic regions from SNP 127675 to 128275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,261 DEBUG Processing 543/871 atomic regions from SNP 162873 to 163473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,295 DEBUG Processing 390/1146 atomic regions from SNP 116979 to 117579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,347 DEBUG Processing 316/659 atomic regions from SNP 94567 to 95167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,355 DEBUG Processing 436/480 atomic regions from SNP 130722 to 131322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:54,374 DEBUG Processing 510/918 atomic regions from SNP 152957 to 153557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,510 DEBUG Processing 544/871 atomic regions from SNP 163173 to 163773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,520 DEBUG Processing 427/1038 atomic regions from SNP 127975 to 128575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,585 DEBUG Processing 391/1146 atomic regions from SNP 117279 to 117879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,587 DEBUG Processing 317/659 atomic regions from SNP 94867 to 95467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,593 DEBUG Processing 437/480 atomic regions from SNP 131022 to 131622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:54,617 DEBUG Processing 511/918 atomic regions from SNP 153257 to 153857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,751 DEBUG Processing 545/871 atomic regions from SNP 163473 to 164073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,797 DEBUG Processing 428/1038 atomic regions from SNP 128275 to 128875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,824 DEBUG Processing 318/659 atomic regions from SNP 95167 to 95767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,834 DEBUG Processing 438/480 atomic regions from SNP 131322 to 131922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:54,855 DEBUG Processing 512/918 atomic regions from SNP 153557 to 154157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,868 DEBUG Processing 392/1146 atomic regions from SNP 117579 to 118179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,986 DEBUG Processing 546/871 atomic regions from SNP 163773 to 164373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,060 DEBUG Processing 319/659 atomic regions from SNP 95467 to 96067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,068 DEBUG Processing 439/480 atomic regions from SNP 131622 to 132222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:55,084 DEBUG Processing 429/1038 atomic regions from SNP 128575 to 129175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,098 DEBUG Processing 513/918 atomic regions from SNP 153857 to 154457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,144 DEBUG Processing 393/1146 atomic regions from SNP 117879 to 118479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,217 DEBUG Processing 547/871 atomic regions from SNP 164073 to 164673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,297 DEBUG Processing 320/659 atomic regions from SNP 95767 to 96367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,311 DEBUG Processing 440/480 atomic regions from SNP 131922 to 132522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:55,344 DEBUG Processing 514/918 atomic regions from SNP 154157 to 154757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,354 DEBUG Processing 430/1038 atomic regions from SNP 128875 to 129475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,429 DEBUG Processing 394/1146 atomic regions from SNP 118179 to 118779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,447 DEBUG Processing 548/871 atomic regions from SNP 164373 to 164973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,528 DEBUG Processing 321/659 atomic regions from SNP 96067 to 96667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,547 DEBUG Processing 441/480 atomic regions from SNP 132222 to 132822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:55,590 DEBUG Processing 515/918 atomic regions from SNP 154457 to 155057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,627 DEBUG Processing 431/1038 atomic regions from SNP 129175 to 129775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,686 DEBUG Processing 549/871 atomic regions from SNP 164673 to 165273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,714 DEBUG Processing 395/1146 atomic regions from SNP 118479 to 119079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,754 DEBUG Processing 322/659 atomic regions from SNP 96367 to 96967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,783 DEBUG Processing 442/480 atomic regions from SNP 132522 to 133122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:55,832 DEBUG Processing 516/918 atomic regions from SNP 154757 to 155357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,895 DEBUG Processing 432/1038 atomic regions from SNP 129475 to 130075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,926 DEBUG Processing 550/871 atomic regions from SNP 164973 to 165573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,984 DEBUG Processing 323/659 atomic regions from SNP 96667 to 97267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,995 DEBUG Processing 396/1146 atomic regions from SNP 118779 to 119379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,020 DEBUG Processing 443/480 atomic regions from SNP 132822 to 133422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:56,068 DEBUG Processing 517/918 atomic regions from SNP 155057 to 155657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,162 DEBUG Processing 433/1038 atomic regions from SNP 129775 to 130375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,164 DEBUG Processing 551/871 atomic regions from SNP 165273 to 165873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,220 DEBUG Processing 324/659 atomic regions from SNP 96967 to 97567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,264 DEBUG Processing 444/480 atomic regions from SNP 133122 to 133722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:56,278 DEBUG Processing 397/1146 atomic regions from SNP 119079 to 119679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,309 DEBUG Processing 518/918 atomic regions from SNP 155357 to 155957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,399 DEBUG Processing 552/871 atomic regions from SNP 165573 to 166173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,425 DEBUG Processing 434/1038 atomic regions from SNP 130075 to 130675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,463 DEBUG Processing 325/659 atomic regions from SNP 97267 to 97867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,511 DEBUG Processing 445/480 atomic regions from SNP 133422 to 134022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:56,557 DEBUG Processing 519/918 atomic regions from SNP 155657 to 156257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,570 DEBUG Processing 398/1146 atomic regions from SNP 119379 to 119979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,646 DEBUG Processing 553/871 atomic regions from SNP 165873 to 166473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,688 DEBUG Processing 435/1038 atomic regions from SNP 130375 to 130975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,701 DEBUG Processing 326/659 atomic regions from SNP 97567 to 98167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,761 DEBUG Processing 446/480 atomic regions from SNP 133722 to 134322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:56,805 DEBUG Processing 520/918 atomic regions from SNP 155957 to 156557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,857 DEBUG Processing 399/1146 atomic regions from SNP 119679 to 120279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,901 DEBUG Processing 554/871 atomic regions from SNP 166173 to 166773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,941 DEBUG Processing 327/659 atomic regions from SNP 97867 to 98467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,956 DEBUG Processing 436/1038 atomic regions from SNP 130675 to 131275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,009 DEBUG Processing 447/480 atomic regions from SNP 134022 to 134622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:57,048 DEBUG Processing 521/918 atomic regions from SNP 156257 to 156857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,141 DEBUG Processing 400/1146 atomic regions from SNP 119979 to 120579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,142 DEBUG Processing 555/871 atomic regions from SNP 166473 to 167073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,180 DEBUG Processing 328/659 atomic regions from SNP 98167 to 98767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,226 DEBUG Processing 437/1038 atomic regions from SNP 130975 to 131575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,255 DEBUG Processing 448/480 atomic regions from SNP 134322 to 134922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:57,290 DEBUG Processing 522/918 atomic regions from SNP 156557 to 157157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,413 DEBUG Processing 556/871 atomic regions from SNP 166773 to 167373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,421 DEBUG Processing 401/1146 atomic regions from SNP 120279 to 120879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,428 DEBUG Processing 329/659 atomic regions from SNP 98467 to 99067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,500 DEBUG Processing 438/1038 atomic regions from SNP 131275 to 131875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,503 DEBUG Processing 449/480 atomic regions from SNP 134622 to 135222 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:57,530 DEBUG Processing 523/918 atomic regions from SNP 156857 to 157457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,677 DEBUG Processing 330/659 atomic regions from SNP 98767 to 99367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,679 DEBUG Processing 557/871 atomic regions from SNP 167073 to 167673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,709 DEBUG Processing 402/1146 atomic regions from SNP 120579 to 121179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,750 DEBUG Processing 450/480 atomic regions from SNP 134922 to 135522 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:57,774 DEBUG Processing 439/1038 atomic regions from SNP 131575 to 132175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,778 DEBUG Processing 524/918 atomic regions from SNP 157157 to 157757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,933 DEBUG Processing 331/659 atomic regions from SNP 99067 to 99667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,952 DEBUG Processing 558/871 atomic regions from SNP 167373 to 167973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,000 DEBUG Processing 451/480 atomic regions from SNP 135222 to 135822 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:58,015 DEBUG Processing 403/1146 atomic regions from SNP 120879 to 121479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,033 DEBUG Processing 525/918 atomic regions from SNP 157457 to 158057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,078 DEBUG Processing 440/1038 atomic regions from SNP 131875 to 132475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,172 DEBUG Processing 332/659 atomic regions from SNP 99367 to 99967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,196 DEBUG Processing 559/871 atomic regions from SNP 167673 to 168273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,250 DEBUG Processing 452/480 atomic regions from SNP 135522 to 136122 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:58,287 DEBUG Processing 526/918 atomic regions from SNP 157757 to 158357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,301 DEBUG Processing 404/1146 atomic regions from SNP 121179 to 121779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,355 DEBUG Processing 441/1038 atomic regions from SNP 132175 to 132775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,403 DEBUG Processing 333/659 atomic regions from SNP 99667 to 100267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,428 DEBUG Processing 560/871 atomic regions from SNP 167973 to 168573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,497 DEBUG Processing 453/480 atomic regions from SNP 135822 to 136422 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:58,546 DEBUG Processing 527/918 atomic regions from SNP 158057 to 158657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,581 DEBUG Processing 405/1146 atomic regions from SNP 121479 to 122079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,643 DEBUG Processing 334/659 atomic regions from SNP 99967 to 100567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,645 DEBUG Processing 442/1038 atomic regions from SNP 132475 to 133075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,669 DEBUG Processing 561/871 atomic regions from SNP 168273 to 168873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,750 DEBUG Processing 454/480 atomic regions from SNP 136122 to 136722 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:58,830 DEBUG Processing 528/918 atomic regions from SNP 158357 to 158957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,876 DEBUG Processing 406/1146 atomic regions from SNP 121779 to 122379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,888 DEBUG Processing 335/659 atomic regions from SNP 100267 to 100867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,913 DEBUG Processing 562/871 atomic regions from SNP 168573 to 169173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,924 DEBUG Processing 443/1038 atomic regions from SNP 132775 to 133375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,994 DEBUG Processing 455/480 atomic regions from SNP 136422 to 137022 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:59,104 DEBUG Processing 529/918 atomic regions from SNP 158657 to 159257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,145 DEBUG Processing 336/659 atomic regions from SNP 100567 to 101167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,162 DEBUG Processing 563/871 atomic regions from SNP 168873 to 169473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,164 DEBUG Processing 407/1146 atomic regions from SNP 122079 to 122679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,207 DEBUG Processing 444/1038 atomic regions from SNP 133075 to 133675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,241 DEBUG Processing 456/480 atomic regions from SNP 136722 to 137322 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:59,379 DEBUG Processing 530/918 atomic regions from SNP 158957 to 159557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,412 DEBUG Processing 337/659 atomic regions from SNP 100867 to 101467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,416 DEBUG Processing 564/871 atomic regions from SNP 169173 to 169773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,459 DEBUG Processing 408/1146 atomic regions from SNP 122379 to 122979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,487 DEBUG Processing 457/480 atomic regions from SNP 137022 to 137622 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:59,491 DEBUG Processing 445/1038 atomic regions from SNP 133375 to 133975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,672 DEBUG Processing 531/918 atomic regions from SNP 159257 to 159857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,676 DEBUG Processing 565/871 atomic regions from SNP 169473 to 170073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,690 DEBUG Processing 338/659 atomic regions from SNP 101167 to 101767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,743 DEBUG Processing 458/480 atomic regions from SNP 137322 to 137922 for chrX (subchromosome 3 of 4). 2025-01-31 09:46:59,769 DEBUG Processing 409/1146 atomic regions from SNP 122679 to 123279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,804 DEBUG Processing 446/1038 atomic regions from SNP 133675 to 134275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,935 DEBUG Processing 566/871 atomic regions from SNP 169773 to 170373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,962 DEBUG Processing 339/659 atomic regions from SNP 101467 to 102067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,968 DEBUG Processing 532/918 atomic regions from SNP 159557 to 160157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,995 DEBUG Processing 459/480 atomic regions from SNP 137622 to 138222 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:00,076 DEBUG Processing 447/1038 atomic regions from SNP 133975 to 134575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,086 DEBUG Processing 410/1146 atomic regions from SNP 122979 to 123579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,176 DEBUG Processing 567/871 atomic regions from SNP 170073 to 170673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,201 DEBUG Processing 340/659 atomic regions from SNP 101767 to 102367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,236 DEBUG Processing 460/480 atomic regions from SNP 137922 to 138522 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:00,256 DEBUG Processing 533/918 atomic regions from SNP 159857 to 160457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,358 DEBUG Processing 448/1038 atomic regions from SNP 134275 to 134875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,400 DEBUG Processing 411/1146 atomic regions from SNP 123279 to 123879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,417 DEBUG Processing 568/871 atomic regions from SNP 170373 to 170973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,439 DEBUG Processing 341/659 atomic regions from SNP 102067 to 102667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,473 DEBUG Processing 461/480 atomic regions from SNP 138222 to 138822 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:00,541 DEBUG Processing 534/918 atomic regions from SNP 160157 to 160757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,642 DEBUG Processing 449/1038 atomic regions from SNP 134575 to 135175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,665 DEBUG Processing 569/871 atomic regions from SNP 170673 to 171273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,685 DEBUG Processing 342/659 atomic regions from SNP 102367 to 102967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,709 DEBUG Processing 412/1146 atomic regions from SNP 123579 to 124179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,721 DEBUG Processing 462/480 atomic regions from SNP 138522 to 139122 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:00,822 DEBUG Processing 535/918 atomic regions from SNP 160457 to 161057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,918 DEBUG Processing 570/871 atomic regions from SNP 170973 to 171573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,924 DEBUG Processing 450/1038 atomic regions from SNP 134875 to 135475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,935 DEBUG Processing 343/659 atomic regions from SNP 102667 to 103267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,979 DEBUG Processing 463/480 atomic regions from SNP 138822 to 139422 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:01,023 DEBUG Processing 413/1146 atomic regions from SNP 123879 to 124479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,110 DEBUG Processing 536/918 atomic regions from SNP 160757 to 161357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,166 DEBUG Processing 571/871 atomic regions from SNP 171273 to 171873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,184 DEBUG Processing 344/659 atomic regions from SNP 102967 to 103567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,213 DEBUG Processing 451/1038 atomic regions from SNP 135175 to 135775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,238 DEBUG Processing 464/480 atomic regions from SNP 139122 to 139722 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:01,335 DEBUG Processing 414/1146 atomic regions from SNP 124179 to 124779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,391 DEBUG Processing 537/918 atomic regions from SNP 161057 to 161657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,407 DEBUG Processing 572/871 atomic regions from SNP 171573 to 172173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,428 DEBUG Processing 345/659 atomic regions from SNP 103267 to 103867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,500 DEBUG Processing 465/480 atomic regions from SNP 139422 to 140022 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:01,504 DEBUG Processing 452/1038 atomic regions from SNP 135475 to 136075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,633 DEBUG Processing 415/1146 atomic regions from SNP 124479 to 125079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,649 DEBUG Processing 573/871 atomic regions from SNP 171873 to 172473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,670 DEBUG Processing 346/659 atomic regions from SNP 103567 to 104167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,680 DEBUG Processing 538/918 atomic regions from SNP 161357 to 161957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,748 DEBUG Processing 466/480 atomic regions from SNP 139722 to 140322 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:01,781 DEBUG Processing 453/1038 atomic regions from SNP 135775 to 136375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,892 DEBUG Processing 574/871 atomic regions from SNP 172173 to 172773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,914 DEBUG Processing 347/659 atomic regions from SNP 103867 to 104467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,923 DEBUG Processing 416/1146 atomic regions from SNP 124779 to 125379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,967 DEBUG Processing 539/918 atomic regions from SNP 161657 to 162257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,996 DEBUG Processing 467/480 atomic regions from SNP 140022 to 140622 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:02,045 DEBUG Processing 454/1038 atomic regions from SNP 136075 to 136675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,156 DEBUG Processing 575/871 atomic regions from SNP 172473 to 173073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,170 DEBUG Processing 348/659 atomic regions from SNP 104167 to 104767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,224 DEBUG Processing 417/1146 atomic regions from SNP 125079 to 125679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,249 DEBUG Processing 468/480 atomic regions from SNP 140322 to 140922 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:02,265 DEBUG Processing 540/918 atomic regions from SNP 161957 to 162557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,312 DEBUG Processing 455/1038 atomic regions from SNP 136375 to 136975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,429 DEBUG Processing 349/659 atomic regions from SNP 104467 to 105067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,443 DEBUG Processing 576/871 atomic regions from SNP 172773 to 173373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,504 DEBUG Processing 469/480 atomic regions from SNP 140622 to 141222 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:02,537 DEBUG Processing 418/1146 atomic regions from SNP 125379 to 125979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,557 DEBUG Processing 541/918 atomic regions from SNP 162257 to 162857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,573 DEBUG Processing 456/1038 atomic regions from SNP 136675 to 137275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,677 DEBUG Processing 350/659 atomic regions from SNP 104767 to 105367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,730 DEBUG Processing 577/871 atomic regions from SNP 173073 to 173673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,764 DEBUG Processing 470/480 atomic regions from SNP 140922 to 141522 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:02,836 DEBUG Processing 457/1038 atomic regions from SNP 136975 to 137575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,836 DEBUG Processing 419/1146 atomic regions from SNP 125679 to 126279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,836 DEBUG Processing 542/918 atomic regions from SNP 162557 to 163157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,911 DEBUG Processing 351/659 atomic regions from SNP 105067 to 105667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,003 DEBUG Processing 578/871 atomic regions from SNP 173373 to 173973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,016 DEBUG Processing 471/480 atomic regions from SNP 141222 to 141822 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:03,104 DEBUG Processing 458/1038 atomic regions from SNP 137275 to 137875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,113 DEBUG Processing 543/918 atomic regions from SNP 162857 to 163457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,141 DEBUG Processing 420/1146 atomic regions from SNP 125979 to 126579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,143 DEBUG Processing 352/659 atomic regions from SNP 105367 to 105967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,254 DEBUG Processing 579/871 atomic regions from SNP 173673 to 174273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,265 DEBUG Processing 472/480 atomic regions from SNP 141522 to 142122 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:03,374 DEBUG Processing 459/1038 atomic regions from SNP 137575 to 138175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,378 DEBUG Processing 353/659 atomic regions from SNP 105667 to 106267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,386 DEBUG Processing 544/918 atomic regions from SNP 163157 to 163757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,459 DEBUG Processing 421/1146 atomic regions from SNP 126279 to 126879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,490 DEBUG Processing 580/871 atomic regions from SNP 173973 to 174573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,512 DEBUG Processing 473/480 atomic regions from SNP 141822 to 142422 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:03,612 DEBUG Processing 354/659 atomic regions from SNP 105967 to 106567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,637 DEBUG Processing 460/1038 atomic regions from SNP 137875 to 138475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,658 DEBUG Processing 545/918 atomic regions from SNP 163457 to 164057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,728 DEBUG Processing 581/871 atomic regions from SNP 174273 to 174873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,763 DEBUG Processing 474/480 atomic regions from SNP 142122 to 142722 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:03,783 DEBUG Processing 422/1146 atomic regions from SNP 126579 to 127179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,852 DEBUG Processing 355/659 atomic regions from SNP 106267 to 106867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,908 DEBUG Processing 461/1038 atomic regions from SNP 138175 to 138775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,925 DEBUG Processing 546/918 atomic regions from SNP 163757 to 164357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,975 DEBUG Processing 582/871 atomic regions from SNP 174573 to 175173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,017 DEBUG Processing 475/480 atomic regions from SNP 142422 to 143022 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:04,087 DEBUG Processing 356/659 atomic regions from SNP 106567 to 107167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,111 DEBUG Processing 423/1146 atomic regions from SNP 126879 to 127479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,185 DEBUG Processing 462/1038 atomic regions from SNP 138475 to 139075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,197 DEBUG Processing 547/918 atomic regions from SNP 164057 to 164657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,225 DEBUG Processing 583/871 atomic regions from SNP 174873 to 175473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,267 DEBUG Processing 476/480 atomic regions from SNP 142722 to 143322 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:04,324 DEBUG Processing 357/659 atomic regions from SNP 106867 to 107467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,426 DEBUG Processing 424/1146 atomic regions from SNP 127179 to 127779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,460 DEBUG Processing 463/1038 atomic regions from SNP 138775 to 139375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,473 DEBUG Processing 584/871 atomic regions from SNP 175173 to 175773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,485 DEBUG Processing 548/918 atomic regions from SNP 164357 to 164957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,505 DEBUG Processing 477/480 atomic regions from SNP 143022 to 143622 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:04,560 DEBUG Processing 358/659 atomic regions from SNP 107167 to 107767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,724 DEBUG Processing 585/871 atomic regions from SNP 175473 to 176073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,739 DEBUG Processing 425/1146 atomic regions from SNP 127479 to 128079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,741 DEBUG Processing 464/1038 atomic regions from SNP 139075 to 139675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,754 DEBUG Processing 478/480 atomic regions from SNP 143322 to 143922 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:04,767 DEBUG Processing 549/918 atomic regions from SNP 164657 to 165257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,797 DEBUG Processing 359/659 atomic regions from SNP 107467 to 108067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,984 DEBUG Processing 586/871 atomic regions from SNP 175773 to 176373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,001 DEBUG Processing 479/480 atomic regions from SNP 143622 to 144222 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:05,014 DEBUG Processing 465/1038 atomic regions from SNP 139375 to 139975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,038 DEBUG Processing 360/659 atomic regions from SNP 107767 to 108367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,048 DEBUG Processing 550/918 atomic regions from SNP 164957 to 165557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,059 DEBUG Processing 426/1146 atomic regions from SNP 127779 to 128379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,248 DEBUG Processing 480/480 atomic regions from SNP 143922 to 144522 for chrX (subchromosome 3 of 4). 2025-01-31 09:47:05,252 DEBUG Processing 587/871 atomic regions from SNP 176073 to 176673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,283 DEBUG Processing 361/659 atomic regions from SNP 108067 to 108667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,292 DEBUG Processing 466/1038 atomic regions from SNP 139675 to 140275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,324 DEBUG Processing 551/918 atomic regions from SNP 165257 to 165857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,367 DEBUG Processing 427/1146 atomic regions from SNP 128079 to 128679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,387 DEBUG Unique SNPs positions in subchromosome 3: 144523 2025-01-31 09:47:05,509 DEBUG Processing 588/871 atomic regions from SNP 176373 to 176973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,521 DEBUG Processing 362/659 atomic regions from SNP 108367 to 108967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,560 DEBUG Processing 467/1038 atomic regions from SNP 139975 to 140575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,592 DEBUG Processing 552/918 atomic regions from SNP 165557 to 166157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,682 DEBUG Processing 428/1146 atomic regions from SNP 128379 to 128979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,748 DEBUG Processing 589/871 atomic regions from SNP 176673 to 177273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,757 DEBUG Processing 363/659 atomic regions from SNP 108667 to 109267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,826 DEBUG Processing 468/1038 atomic regions from SNP 140275 to 140875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,843 DEBUG Processing 553/918 atomic regions from SNP 165857 to 166457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,990 DEBUG Processing 590/871 atomic regions from SNP 176973 to 177573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,996 DEBUG Processing 364/659 atomic regions from SNP 108967 to 109567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,012 DEBUG Processing 429/1146 atomic regions from SNP 128679 to 129279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,054 DEBUG Subchromosome time: 139.75732387800235, subchromosome SNPs: 144523 2025-01-31 09:47:06,072 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:06,096 DEBUG Processing 469/1038 atomic regions from SNP 140575 to 141175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,097 DEBUG Processing 554/918 atomic regions from SNP 166157 to 166757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,225 DEBUG Processing 591/871 atomic regions from SNP 177273 to 177873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,231 DEBUG Processing 365/659 atomic regions from SNP 109267 to 109867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,334 DEBUG Processing 430/1146 atomic regions from SNP 128979 to 129579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,351 DEBUG Processing 555/918 atomic regions from SNP 166457 to 167057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,364 DEBUG Processing 470/1038 atomic regions from SNP 140875 to 141475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,460 DEBUG Processing 592/871 atomic regions from SNP 177573 to 178173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,465 DEBUG Processing 366/659 atomic regions from SNP 109567 to 110167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,621 DEBUG Processing 556/918 atomic regions from SNP 166757 to 167357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,634 DEBUG Processing 471/1038 atomic regions from SNP 141175 to 141775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,639 DEBUG Processing 431/1146 atomic regions from SNP 129279 to 129879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,707 DEBUG Processing 593/871 atomic regions from SNP 177873 to 178473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,707 DEBUG Processing 367/659 atomic regions from SNP 109867 to 110467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,876 DEBUG Processing 557/918 atomic regions from SNP 167057 to 167657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,909 DEBUG Processing 472/1038 atomic regions from SNP 141475 to 142075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,935 DEBUG Processing 432/1146 atomic regions from SNP 129579 to 130179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,954 DEBUG Processing 368/659 atomic regions from SNP 110167 to 110767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,968 DEBUG Processing 594/871 atomic regions from SNP 178173 to 178773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,120 DEBUG Processing 558/918 atomic regions from SNP 167357 to 167957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,176 DEBUG Processing 473/1038 atomic regions from SNP 141775 to 142375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,208 DEBUG Processing 369/659 atomic regions from SNP 110467 to 111067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,209 DEBUG Processing 595/871 atomic regions from SNP 178473 to 179073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,216 DEBUG Processing 433/1146 atomic regions from SNP 129879 to 130479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,362 DEBUG Processing 559/918 atomic regions from SNP 167657 to 168257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,436 DEBUG Processing 474/1038 atomic regions from SNP 142075 to 142675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,451 DEBUG Processing 596/871 atomic regions from SNP 178773 to 179373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,462 DEBUG Processing 370/659 atomic regions from SNP 110767 to 111367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,487 DEBUG Processing 434/1146 atomic regions from SNP 130179 to 130779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,611 DEBUG Processing 560/918 atomic regions from SNP 167957 to 168557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,697 DEBUG Processing 475/1038 atomic regions from SNP 142375 to 142975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,697 DEBUG Processing 597/871 atomic regions from SNP 179073 to 179673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,725 DEBUG Processing 371/659 atomic regions from SNP 111067 to 111667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,759 DEBUG Processing 435/1146 atomic regions from SNP 130479 to 131079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,856 DEBUG Processing 561/918 atomic regions from SNP 168257 to 168857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,956 DEBUG Processing 598/871 atomic regions from SNP 179373 to 179973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,970 DEBUG Processing 476/1038 atomic regions from SNP 142675 to 143275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,000 DEBUG Processing 372/659 atomic regions from SNP 111367 to 111967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,044 DEBUG Processing 436/1146 atomic regions from SNP 130779 to 131379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,116 DEBUG Processing 562/918 atomic regions from SNP 168557 to 169157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,211 DEBUG Processing 599/871 atomic regions from SNP 179673 to 180273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,242 DEBUG Processing 477/1038 atomic regions from SNP 142975 to 143575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,269 DEBUG Processing 373/659 atomic regions from SNP 111667 to 112267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,324 DEBUG Processing 437/1146 atomic regions from SNP 131079 to 131679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,374 DEBUG Processing 563/918 atomic regions from SNP 168857 to 169457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,465 DEBUG Processing 600/871 atomic regions from SNP 179973 to 180573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,515 DEBUG Processing 478/1038 atomic regions from SNP 143275 to 143875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,530 DEBUG Processing 374/659 atomic regions from SNP 111967 to 112567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,601 DEBUG Processing 438/1146 atomic regions from SNP 131379 to 131979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,646 DEBUG Processing 564/918 atomic regions from SNP 169157 to 169757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,730 DEBUG Processing 601/871 atomic regions from SNP 180273 to 180873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,788 DEBUG Processing 479/1038 atomic regions from SNP 143575 to 144175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,792 DEBUG Processing 375/659 atomic regions from SNP 112267 to 112867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,881 DEBUG Processing 439/1146 atomic regions from SNP 131679 to 132279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,910 DEBUG Processing 565/918 atomic regions from SNP 169457 to 170057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,993 DEBUG Processing 602/871 atomic regions from SNP 180573 to 181173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,061 DEBUG Processing 376/659 atomic regions from SNP 112567 to 113167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,063 DEBUG Processing 480/1038 atomic regions from SNP 143875 to 144475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,164 DEBUG Processing 440/1146 atomic regions from SNP 131979 to 132579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,179 DEBUG Processing 566/918 atomic regions from SNP 169757 to 170357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,237 DEBUG Processing 603/871 atomic regions from SNP 180873 to 181473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,333 DEBUG Processing 377/659 atomic regions from SNP 112867 to 113467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,339 DEBUG Processing 481/1038 atomic regions from SNP 144175 to 144775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,447 DEBUG Processing 441/1146 atomic regions from SNP 132279 to 132879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,456 DEBUG Processing 567/918 atomic regions from SNP 170057 to 170657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,494 DEBUG Processing 604/871 atomic regions from SNP 181173 to 181773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,611 DEBUG Processing 378/659 atomic regions from SNP 113167 to 113767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,611 DEBUG Processing 482/1038 atomic regions from SNP 144475 to 145075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,729 DEBUG Processing 568/918 atomic regions from SNP 170357 to 170957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,736 DEBUG Processing 442/1146 atomic regions from SNP 132579 to 133179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,757 DEBUG Processing 605/871 atomic regions from SNP 181473 to 182073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,879 DEBUG Processing 379/659 atomic regions from SNP 113467 to 114067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,882 DEBUG Processing 483/1038 atomic regions from SNP 144775 to 145375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,014 DEBUG Processing 569/918 atomic regions from SNP 170657 to 171257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,027 DEBUG Processing 606/871 atomic regions from SNP 181773 to 182373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,030 DEBUG Processing 443/1146 atomic regions from SNP 132879 to 133479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,133 DEBUG Processing 380/659 atomic regions from SNP 113767 to 114367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,154 DEBUG Processing 484/1038 atomic regions from SNP 145075 to 145675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,269 DEBUG Processing 607/871 atomic regions from SNP 182073 to 182673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,300 DEBUG Processing 570/918 atomic regions from SNP 170957 to 171557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,334 DEBUG Processing 444/1146 atomic regions from SNP 133179 to 133779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,399 DEBUG Processing 381/659 atomic regions from SNP 114067 to 114667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,435 DEBUG Processing 485/1038 atomic regions from SNP 145375 to 145975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,508 DEBUG Processing 608/871 atomic regions from SNP 182373 to 182973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,580 DEBUG Processing 571/918 atomic regions from SNP 171257 to 171857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,603 DEBUG Processing 445/1146 atomic regions from SNP 133479 to 134079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,643 DEBUG Processing 382/659 atomic regions from SNP 114367 to 114967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,708 DEBUG Processing 486/1038 atomic regions from SNP 145675 to 146275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,750 DEBUG Processing 609/871 atomic regions from SNP 182673 to 183273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,859 DEBUG Processing 572/918 atomic regions from SNP 171557 to 172157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,881 DEBUG Processing 446/1146 atomic regions from SNP 133779 to 134379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,890 DEBUG Processing 383/659 atomic regions from SNP 114667 to 115267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,984 DEBUG Processing 487/1038 atomic regions from SNP 145975 to 146575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,992 DEBUG Processing 610/871 atomic regions from SNP 182973 to 183573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,142 DEBUG Processing 573/918 atomic regions from SNP 171857 to 172457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,158 DEBUG Processing 384/659 atomic regions from SNP 114967 to 115567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,173 DEBUG Processing 447/1146 atomic regions from SNP 134079 to 134679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,240 DEBUG Processing 611/871 atomic regions from SNP 183273 to 183873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,265 DEBUG Processing 488/1038 atomic regions from SNP 146275 to 146875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,417 DEBUG Processing 385/659 atomic regions from SNP 115267 to 115867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,440 DEBUG Processing 574/918 atomic regions from SNP 172157 to 172757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,475 DEBUG Processing 448/1146 atomic regions from SNP 134379 to 134979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,489 DEBUG Processing 612/871 atomic regions from SNP 183573 to 184173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,539 DEBUG Processing 489/1038 atomic regions from SNP 146575 to 147175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,680 DEBUG Processing 386/659 atomic regions from SNP 115567 to 116167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,728 DEBUG Processing 575/918 atomic regions from SNP 172457 to 173057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,756 DEBUG Processing 613/871 atomic regions from SNP 183873 to 184473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,776 DEBUG Processing 449/1146 atomic regions from SNP 134679 to 135279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,813 DEBUG Processing 490/1038 atomic regions from SNP 146875 to 147475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,936 DEBUG Processing 387/659 atomic regions from SNP 115867 to 116467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,999 DEBUG Processing 576/918 atomic regions from SNP 172757 to 173357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,025 DEBUG Processing 614/871 atomic regions from SNP 184173 to 184773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,069 DEBUG Processing 450/1146 atomic regions from SNP 134979 to 135579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,093 DEBUG Processing 491/1038 atomic regions from SNP 147175 to 147775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,189 DEBUG Processing 388/659 atomic regions from SNP 116167 to 116767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,258 DEBUG Processing 577/918 atomic regions from SNP 173057 to 173657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,298 DEBUG Processing 615/871 atomic regions from SNP 184473 to 185073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,365 DEBUG Processing 451/1146 atomic regions from SNP 135279 to 135879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,372 DEBUG Processing 492/1038 atomic regions from SNP 147475 to 148075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,421 DEBUG Processing 389/659 atomic regions from SNP 116467 to 117067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,523 DEBUG Processing 578/918 atomic regions from SNP 173357 to 173957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,574 DEBUG Processing 616/871 atomic regions from SNP 184773 to 185373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,655 DEBUG Processing 390/659 atomic regions from SNP 116767 to 117367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,657 DEBUG Processing 452/1146 atomic regions from SNP 135579 to 136179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,677 DEBUG Processing 493/1038 atomic regions from SNP 147775 to 148375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,782 DEBUG Processing 579/918 atomic regions from SNP 173657 to 174257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,844 DEBUG Processing 617/871 atomic regions from SNP 185073 to 185673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,895 DEBUG Processing 391/659 atomic regions from SNP 117067 to 117667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,954 DEBUG Processing 453/1146 atomic regions from SNP 135879 to 136479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,986 DEBUG Processing 494/1038 atomic regions from SNP 148075 to 148675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,065 DEBUG Processing 580/918 atomic regions from SNP 173957 to 174557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,109 DEBUG Processing 618/871 atomic regions from SNP 185373 to 185973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,130 DEBUG Processing 392/659 atomic regions from SNP 117367 to 117967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,239 DEBUG Processing 454/1146 atomic regions from SNP 136179 to 136779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,286 DEBUG Processing 495/1038 atomic regions from SNP 148375 to 148975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,345 DEBUG Processing 581/918 atomic regions from SNP 174257 to 174857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,354 DEBUG Processing 619/871 atomic regions from SNP 185673 to 186273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,368 DEBUG Processing 393/659 atomic regions from SNP 117667 to 118267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,526 DEBUG Processing 455/1146 atomic regions from SNP 136479 to 137079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,571 DEBUG Processing 496/1038 atomic regions from SNP 148675 to 149275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,618 DEBUG Processing 394/659 atomic regions from SNP 117967 to 118567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,626 DEBUG Processing 620/871 atomic regions from SNP 185973 to 186573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,630 DEBUG Processing 582/918 atomic regions from SNP 174557 to 175157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,824 DEBUG Processing 456/1146 atomic regions from SNP 136779 to 137379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,842 DEBUG Processing 497/1038 atomic regions from SNP 148975 to 149575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,865 DEBUG Processing 395/659 atomic regions from SNP 118267 to 118867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,899 DEBUG Processing 621/871 atomic regions from SNP 186273 to 186873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,915 DEBUG Processing 583/918 atomic regions from SNP 174857 to 175457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,113 DEBUG Processing 498/1038 atomic regions from SNP 149275 to 149875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,117 DEBUG Processing 396/659 atomic regions from SNP 118567 to 119167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,123 DEBUG Processing 457/1146 atomic regions from SNP 137079 to 137679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,159 DEBUG Processing 622/871 atomic regions from SNP 186573 to 187173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,204 DEBUG Processing 584/918 atomic regions from SNP 175157 to 175757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,356 DEBUG Processing 397/659 atomic regions from SNP 118867 to 119467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,380 DEBUG Processing 499/1038 atomic regions from SNP 149575 to 150175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,413 DEBUG Processing 623/871 atomic regions from SNP 186873 to 187473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,430 DEBUG Processing 458/1146 atomic regions from SNP 137379 to 137979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,486 DEBUG Processing 585/918 atomic regions from SNP 175457 to 176057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,591 DEBUG Processing 398/659 atomic regions from SNP 119167 to 119767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,649 DEBUG Processing 500/1038 atomic regions from SNP 149875 to 150475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,665 DEBUG Processing 624/871 atomic regions from SNP 187173 to 187773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,680 DEBUG Segmenting atomic regions: 2025-01-31 09:47:14,725 DEBUG Processing 459/1146 atomic regions from SNP 137679 to 138279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,757 DEBUG Processing 586/918 atomic regions from SNP 175757 to 176357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,789 DEBUG Processing 1/237 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:14,830 DEBUG Processing 399/659 atomic regions from SNP 119467 to 120067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,913 DEBUG Processing 625/871 atomic regions from SNP 187473 to 188073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,923 DEBUG Processing 501/1038 atomic regions from SNP 150175 to 150775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,022 DEBUG Processing 587/918 atomic regions from SNP 176057 to 176657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,026 DEBUG Processing 460/1146 atomic regions from SNP 137979 to 138579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,051 DEBUG Processing 2/237 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:15,073 DEBUG Processing 400/659 atomic regions from SNP 119767 to 120367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,170 DEBUG Processing 626/871 atomic regions from SNP 187773 to 188373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,197 DEBUG Processing 502/1038 atomic regions from SNP 150475 to 151075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,297 DEBUG Processing 3/237 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:15,301 DEBUG Processing 588/918 atomic regions from SNP 176357 to 176957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,308 DEBUG Processing 461/1146 atomic regions from SNP 138279 to 138879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,312 DEBUG Processing 401/659 atomic regions from SNP 120067 to 120667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,440 DEBUG Processing 627/871 atomic regions from SNP 188073 to 188673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,463 DEBUG Processing 503/1038 atomic regions from SNP 150775 to 151375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,544 DEBUG Processing 4/237 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:15,553 DEBUG Processing 402/659 atomic regions from SNP 120367 to 120967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,578 DEBUG Processing 589/918 atomic regions from SNP 176657 to 177257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,597 DEBUG Processing 462/1146 atomic regions from SNP 138579 to 139179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,709 DEBUG Processing 628/871 atomic regions from SNP 188373 to 188973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,728 DEBUG Processing 504/1038 atomic regions from SNP 151075 to 151675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,795 DEBUG Processing 5/237 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:15,795 DEBUG Processing 403/659 atomic regions from SNP 120667 to 121267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,864 DEBUG Processing 590/918 atomic regions from SNP 176957 to 177557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,891 DEBUG Processing 463/1146 atomic regions from SNP 138879 to 139479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,958 DEBUG Processing 629/871 atomic regions from SNP 188673 to 189273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,000 DEBUG Processing 505/1038 atomic regions from SNP 151375 to 151975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,044 DEBUG Processing 404/659 atomic regions from SNP 120967 to 121567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,055 DEBUG Processing 6/237 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:16,149 DEBUG Processing 591/918 atomic regions from SNP 177257 to 177857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,185 DEBUG Processing 464/1146 atomic regions from SNP 139179 to 139779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,202 DEBUG Processing 630/871 atomic regions from SNP 188973 to 189573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,284 DEBUG Processing 506/1038 atomic regions from SNP 151675 to 152275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,292 DEBUG Processing 405/659 atomic regions from SNP 121267 to 121867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,317 DEBUG Processing 7/237 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:16,425 DEBUG Processing 592/918 atomic regions from SNP 177557 to 178157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,443 DEBUG Processing 631/871 atomic regions from SNP 189273 to 189873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,483 DEBUG Processing 465/1146 atomic regions from SNP 139479 to 140079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,540 DEBUG Processing 406/659 atomic regions from SNP 121567 to 122167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,559 DEBUG Processing 507/1038 atomic regions from SNP 151975 to 152575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,577 DEBUG Processing 8/237 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:16,687 DEBUG Processing 632/871 atomic regions from SNP 189573 to 190173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,698 DEBUG Processing 593/918 atomic regions from SNP 177857 to 178457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,787 DEBUG Processing 407/659 atomic regions from SNP 121867 to 122467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,788 DEBUG Processing 466/1146 atomic regions from SNP 139779 to 140379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,831 DEBUG Processing 508/1038 atomic regions from SNP 152275 to 152875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,837 DEBUG Processing 9/237 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:16,938 DEBUG Processing 633/871 atomic regions from SNP 189873 to 190473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,965 DEBUG Processing 594/918 atomic regions from SNP 178157 to 178757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,036 DEBUG Processing 408/659 atomic regions from SNP 122167 to 122767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,093 DEBUG Processing 467/1146 atomic regions from SNP 140079 to 140679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,099 DEBUG Processing 10/237 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:17,101 DEBUG Processing 509/1038 atomic regions from SNP 152575 to 153175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,190 DEBUG Processing 634/871 atomic regions from SNP 190173 to 190773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,256 DEBUG Processing 595/918 atomic regions from SNP 178457 to 179057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,289 DEBUG Processing 409/659 atomic regions from SNP 122467 to 123067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,366 DEBUG Processing 11/237 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:17,367 DEBUG Processing 510/1038 atomic regions from SNP 152875 to 153475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,398 DEBUG Processing 468/1146 atomic regions from SNP 140379 to 140979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,447 DEBUG Processing 635/871 atomic regions from SNP 190473 to 191073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,540 DEBUG Processing 410/659 atomic regions from SNP 122767 to 123367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,550 DEBUG Processing 596/918 atomic regions from SNP 178757 to 179357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,621 DEBUG Processing 12/237 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:17,635 DEBUG Processing 511/1038 atomic regions from SNP 153175 to 153775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,696 DEBUG Processing 469/1146 atomic regions from SNP 140679 to 141279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,711 DEBUG Processing 636/871 atomic regions from SNP 190773 to 191373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,792 DEBUG Processing 411/659 atomic regions from SNP 123067 to 123667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,836 DEBUG Processing 597/918 atomic regions from SNP 179057 to 179657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,878 DEBUG Processing 13/237 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:17,901 DEBUG Processing 512/1038 atomic regions from SNP 153475 to 154075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,986 DEBUG Processing 637/871 atomic regions from SNP 191073 to 191673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,006 DEBUG Processing 470/1146 atomic regions from SNP 140979 to 141579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,042 DEBUG Processing 412/659 atomic regions from SNP 123367 to 123967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,130 DEBUG Processing 598/918 atomic regions from SNP 179357 to 179957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,137 DEBUG Processing 14/237 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:18,182 DEBUG Processing 513/1038 atomic regions from SNP 153775 to 154375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,273 DEBUG Processing 638/871 atomic regions from SNP 191373 to 191973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,287 DEBUG Processing 413/659 atomic regions from SNP 123667 to 124267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,321 DEBUG Processing 471/1146 atomic regions from SNP 141279 to 141879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,397 DEBUG Processing 15/237 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:18,398 DEBUG Processing 599/918 atomic regions from SNP 179657 to 180257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,456 DEBUG Processing 514/1038 atomic regions from SNP 154075 to 154675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,521 DEBUG Processing 414/659 atomic regions from SNP 123967 to 124567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,548 DEBUG Processing 639/871 atomic regions from SNP 191673 to 192273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,645 DEBUG Processing 472/1146 atomic regions from SNP 141579 to 142179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,663 DEBUG Processing 16/237 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:18,667 DEBUG Processing 600/918 atomic regions from SNP 179957 to 180557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,732 DEBUG Processing 515/1038 atomic regions from SNP 154375 to 154975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,757 DEBUG Processing 415/659 atomic regions from SNP 124267 to 124867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,825 DEBUG Processing 640/871 atomic regions from SNP 191973 to 192573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,930 DEBUG Processing 17/237 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:18,933 DEBUG Processing 601/918 atomic regions from SNP 180257 to 180857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,968 DEBUG Processing 473/1146 atomic regions from SNP 141879 to 142479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,005 DEBUG Processing 416/659 atomic regions from SNP 124567 to 125167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,012 DEBUG Processing 516/1038 atomic regions from SNP 154675 to 155275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,100 DEBUG Processing 641/871 atomic regions from SNP 192273 to 192873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,188 DEBUG Processing 602/918 atomic regions from SNP 180557 to 181157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,189 DEBUG Processing 18/237 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:19,264 DEBUG Processing 417/659 atomic regions from SNP 124867 to 125467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,293 DEBUG Processing 517/1038 atomic regions from SNP 154975 to 155575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,298 DEBUG Processing 474/1146 atomic regions from SNP 142179 to 142779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,372 DEBUG Processing 642/871 atomic regions from SNP 192573 to 193173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,432 DEBUG Processing 603/918 atomic regions from SNP 180857 to 181457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,442 DEBUG Processing 19/237 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:19,518 DEBUG Processing 418/659 atomic regions from SNP 125167 to 125767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,567 DEBUG Processing 518/1038 atomic regions from SNP 155275 to 155875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,622 DEBUG Processing 475/1146 atomic regions from SNP 142479 to 143079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,644 DEBUG Processing 643/871 atomic regions from SNP 192873 to 193473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,678 DEBUG Processing 604/918 atomic regions from SNP 181157 to 181757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,691 DEBUG Processing 20/237 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:19,788 DEBUG Processing 419/659 atomic regions from SNP 125467 to 126067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,837 DEBUG Processing 519/1038 atomic regions from SNP 155575 to 156175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,918 DEBUG Processing 644/871 atomic regions from SNP 193173 to 193773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,928 DEBUG Processing 476/1146 atomic regions from SNP 142779 to 143379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,949 DEBUG Processing 605/918 atomic regions from SNP 181457 to 182057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,951 DEBUG Processing 21/237 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:20,053 DEBUG Processing 420/659 atomic regions from SNP 125767 to 126367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,104 DEBUG Processing 520/1038 atomic regions from SNP 155875 to 156475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,201 DEBUG Processing 645/871 atomic regions from SNP 193473 to 194073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,221 DEBUG Processing 22/237 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:20,239 DEBUG Processing 477/1146 atomic regions from SNP 143079 to 143679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,240 DEBUG Processing 606/918 atomic regions from SNP 181757 to 182357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,295 DEBUG Processing 421/659 atomic regions from SNP 126067 to 126667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,379 DEBUG Processing 521/1038 atomic regions from SNP 156175 to 156775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,487 DEBUG Processing 646/871 atomic regions from SNP 193773 to 194373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,491 DEBUG Processing 23/237 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:20,529 DEBUG Processing 607/918 atomic regions from SNP 182057 to 182657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,541 DEBUG Processing 422/659 atomic regions from SNP 126367 to 126967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,548 DEBUG Processing 478/1146 atomic regions from SNP 143379 to 143979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,653 DEBUG Processing 522/1038 atomic regions from SNP 156475 to 157075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,753 DEBUG Processing 24/237 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:20,761 DEBUG Processing 647/871 atomic regions from SNP 194073 to 194673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,812 DEBUG Processing 608/918 atomic regions from SNP 182357 to 182957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,818 DEBUG Processing 423/659 atomic regions from SNP 126667 to 127267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,859 DEBUG Processing 479/1146 atomic regions from SNP 143679 to 144279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,925 DEBUG Processing 523/1038 atomic regions from SNP 156775 to 157375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,007 DEBUG Processing 25/237 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:21,037 DEBUG Processing 648/871 atomic regions from SNP 194373 to 194973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,099 DEBUG Processing 609/918 atomic regions from SNP 182657 to 183257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,100 DEBUG Processing 424/659 atomic regions from SNP 126967 to 127567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,163 DEBUG Processing 480/1146 atomic regions from SNP 143979 to 144579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,197 DEBUG Processing 524/1038 atomic regions from SNP 157075 to 157675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,246 DEBUG Processing 26/237 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:21,309 DEBUG Processing 649/871 atomic regions from SNP 194673 to 195273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,376 DEBUG Processing 425/659 atomic regions from SNP 127267 to 127867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,388 DEBUG Processing 610/918 atomic regions from SNP 182957 to 183557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,455 DEBUG Processing 481/1146 atomic regions from SNP 144279 to 144879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,489 DEBUG Processing 525/1038 atomic regions from SNP 157375 to 157975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,491 DEBUG Processing 27/237 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:21,565 DEBUG Processing 650/871 atomic regions from SNP 194973 to 195573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,622 DEBUG Processing 426/659 atomic regions from SNP 127567 to 128167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,671 DEBUG Processing 611/918 atomic regions from SNP 183257 to 183857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,747 DEBUG Processing 28/237 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:21,748 DEBUG Processing 482/1146 atomic regions from SNP 144579 to 145179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,783 DEBUG Processing 526/1038 atomic regions from SNP 157675 to 158275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,832 DEBUG Processing 651/871 atomic regions from SNP 195273 to 195873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,865 DEBUG Processing 427/659 atomic regions from SNP 127867 to 128467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,958 DEBUG Processing 612/918 atomic regions from SNP 183557 to 184157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,004 DEBUG Processing 29/237 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:22,044 DEBUG Processing 483/1146 atomic regions from SNP 144879 to 145479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,087 DEBUG Processing 527/1038 atomic regions from SNP 157975 to 158575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,095 DEBUG Processing 652/871 atomic regions from SNP 195573 to 196173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,133 DEBUG Processing 428/659 atomic regions from SNP 128167 to 128767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,244 DEBUG Processing 613/918 atomic regions from SNP 183857 to 184457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,252 DEBUG Processing 30/237 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:22,337 DEBUG Processing 484/1146 atomic regions from SNP 145179 to 145779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,343 DEBUG Processing 653/871 atomic regions from SNP 195873 to 196473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,396 DEBUG Processing 528/1038 atomic regions from SNP 158275 to 158875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,409 DEBUG Processing 429/659 atomic regions from SNP 128467 to 129067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,498 DEBUG Processing 31/237 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:22,524 DEBUG Processing 614/918 atomic regions from SNP 184157 to 184757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,591 DEBUG Processing 654/871 atomic regions from SNP 196173 to 196773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,632 DEBUG Processing 485/1146 atomic regions from SNP 145479 to 146079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,674 DEBUG Processing 430/659 atomic regions from SNP 128767 to 129367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,709 DEBUG Processing 529/1038 atomic regions from SNP 158575 to 159175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,746 DEBUG Processing 32/237 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:22,804 DEBUG Processing 615/918 atomic regions from SNP 184457 to 185057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,840 DEBUG Processing 655/871 atomic regions from SNP 196473 to 197073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,944 DEBUG Processing 486/1146 atomic regions from SNP 145779 to 146379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,953 DEBUG Processing 431/659 atomic regions from SNP 129067 to 129667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,999 DEBUG Processing 33/237 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:23,013 DEBUG Processing 530/1038 atomic regions from SNP 158875 to 159475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,085 DEBUG Processing 656/871 atomic regions from SNP 196773 to 197373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,091 DEBUG Processing 616/918 atomic regions from SNP 184757 to 185357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,236 DEBUG Processing 432/659 atomic regions from SNP 129367 to 129967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,259 DEBUG Processing 34/237 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:23,280 DEBUG Processing 487/1146 atomic regions from SNP 146079 to 146679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,307 DEBUG Processing 531/1038 atomic regions from SNP 159175 to 159775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,338 DEBUG Processing 657/871 atomic regions from SNP 197073 to 197673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,372 DEBUG Processing 617/918 atomic regions from SNP 185057 to 185657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,507 DEBUG Processing 433/659 atomic regions from SNP 129667 to 130267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,528 DEBUG Processing 35/237 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:23,600 DEBUG Processing 532/1038 atomic regions from SNP 159475 to 160075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,602 DEBUG Processing 658/871 atomic regions from SNP 197373 to 197973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,622 DEBUG Processing 488/1146 atomic regions from SNP 146379 to 146979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,638 DEBUG Processing 618/918 atomic regions from SNP 185357 to 185957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,769 DEBUG Processing 434/659 atomic regions from SNP 129967 to 130567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,795 DEBUG Processing 36/237 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:23,884 DEBUG Processing 659/871 atomic regions from SNP 197673 to 198273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,901 DEBUG Processing 533/1038 atomic regions from SNP 159775 to 160375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,908 DEBUG Processing 619/918 atomic regions from SNP 185657 to 186257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,952 DEBUG Processing 489/1146 atomic regions from SNP 146679 to 147279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,025 DEBUG Processing 435/659 atomic regions from SNP 130267 to 130867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,051 DEBUG Processing 37/237 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:24,168 DEBUG Processing 660/871 atomic regions from SNP 197973 to 198573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,176 DEBUG Processing 620/918 atomic regions from SNP 185957 to 186557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,214 DEBUG Processing 534/1038 atomic regions from SNP 160075 to 160675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,282 DEBUG Processing 490/1146 atomic regions from SNP 146979 to 147579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,304 DEBUG Processing 436/659 atomic regions from SNP 130567 to 131167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,309 DEBUG Processing 38/237 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:24,430 DEBUG Processing 661/871 atomic regions from SNP 198273 to 198873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,431 DEBUG Processing 621/918 atomic regions from SNP 186257 to 186857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,516 DEBUG Processing 535/1038 atomic regions from SNP 160375 to 160975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,571 DEBUG Processing 39/237 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:24,579 DEBUG Processing 437/659 atomic regions from SNP 130867 to 131467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,618 DEBUG Processing 491/1146 atomic regions from SNP 147279 to 147879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,674 DEBUG Processing 662/871 atomic regions from SNP 198573 to 199173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,684 DEBUG Processing 622/918 atomic regions from SNP 186557 to 187157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,811 DEBUG Processing 536/1038 atomic regions from SNP 160675 to 161275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,834 DEBUG Processing 40/237 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:24,856 DEBUG Processing 438/659 atomic regions from SNP 131167 to 131767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,925 DEBUG Processing 663/871 atomic regions from SNP 198873 to 199473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,933 DEBUG Processing 623/918 atomic regions from SNP 186857 to 187457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,947 DEBUG Processing 492/1146 atomic regions from SNP 147579 to 148179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,100 DEBUG Processing 41/237 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:25,126 DEBUG Processing 537/1038 atomic regions from SNP 160975 to 161575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,129 DEBUG Processing 439/659 atomic regions from SNP 131467 to 132067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,190 DEBUG Processing 624/918 atomic regions from SNP 187157 to 187757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,196 DEBUG Processing 664/871 atomic regions from SNP 199173 to 199773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,288 DEBUG Processing 493/1146 atomic regions from SNP 147879 to 148479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,361 DEBUG Processing 42/237 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:25,405 DEBUG Processing 440/659 atomic regions from SNP 131767 to 132367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,430 DEBUG Processing 538/1038 atomic regions from SNP 161275 to 161875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,452 DEBUG Processing 625/918 atomic regions from SNP 187457 to 188057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,474 DEBUG Processing 665/871 atomic regions from SNP 199473 to 200073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,623 DEBUG Processing 43/237 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:25,630 DEBUG Processing 494/1146 atomic regions from SNP 148179 to 148779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,672 DEBUG Processing 441/659 atomic regions from SNP 132067 to 132667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,721 DEBUG Processing 626/918 atomic regions from SNP 187757 to 188357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,727 DEBUG Processing 539/1038 atomic regions from SNP 161575 to 162175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,747 DEBUG Processing 666/871 atomic regions from SNP 199773 to 200373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,888 DEBUG Processing 44/237 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:25,920 DEBUG Processing 442/659 atomic regions from SNP 132367 to 132967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,958 DEBUG Processing 495/1146 atomic regions from SNP 148479 to 149079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,985 DEBUG Processing 627/918 atomic regions from SNP 188057 to 188657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,015 DEBUG Processing 540/1038 atomic regions from SNP 161875 to 162475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,023 DEBUG Processing 667/871 atomic regions from SNP 200073 to 200673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,154 DEBUG Processing 45/237 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:26,191 DEBUG Processing 443/659 atomic regions from SNP 132667 to 133267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,252 DEBUG Processing 628/918 atomic regions from SNP 188357 to 188957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,277 DEBUG Processing 496/1146 atomic regions from SNP 148779 to 149379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,289 DEBUG Processing 668/871 atomic regions from SNP 200373 to 200973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,308 DEBUG Processing 541/1038 atomic regions from SNP 162175 to 162775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,423 DEBUG Processing 46/237 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:26,477 DEBUG Processing 444/659 atomic regions from SNP 132967 to 133567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,512 DEBUG Processing 629/918 atomic regions from SNP 188657 to 189257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,554 DEBUG Processing 669/871 atomic regions from SNP 200673 to 201273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,600 DEBUG Processing 542/1038 atomic regions from SNP 162475 to 163075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,611 DEBUG Processing 497/1146 atomic regions from SNP 149079 to 149679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,690 DEBUG Processing 47/237 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:26,746 DEBUG Processing 445/659 atomic regions from SNP 133267 to 133867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,773 DEBUG Processing 630/918 atomic regions from SNP 188957 to 189557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,812 DEBUG Processing 670/871 atomic regions from SNP 200973 to 201573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,900 DEBUG Processing 543/1038 atomic regions from SNP 162775 to 163375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,953 DEBUG Processing 498/1146 atomic regions from SNP 149379 to 149979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,957 DEBUG Processing 48/237 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:27,013 DEBUG Processing 446/659 atomic regions from SNP 133567 to 134167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,029 DEBUG Processing 631/918 atomic regions from SNP 189257 to 189857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,068 DEBUG Processing 671/871 atomic regions from SNP 201273 to 201873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,188 DEBUG Processing 544/1038 atomic regions from SNP 163075 to 163675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,242 DEBUG Processing 49/237 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:27,268 DEBUG Processing 447/659 atomic regions from SNP 133867 to 134467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,281 DEBUG Processing 499/1146 atomic regions from SNP 149679 to 150279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,294 DEBUG Processing 632/918 atomic regions from SNP 189557 to 190157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,320 DEBUG Processing 672/871 atomic regions from SNP 201573 to 202173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,473 DEBUG Processing 545/1038 atomic regions from SNP 163375 to 163975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,516 DEBUG Processing 50/237 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:27,537 DEBUG Processing 448/659 atomic regions from SNP 134167 to 134767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,561 DEBUG Processing 633/918 atomic regions from SNP 189857 to 190457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,574 DEBUG Processing 673/871 atomic regions from SNP 201873 to 202473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,622 DEBUG Processing 500/1146 atomic regions from SNP 149979 to 150579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,767 DEBUG Processing 546/1038 atomic regions from SNP 163675 to 164275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,786 DEBUG Processing 51/237 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:27,812 DEBUG Processing 449/659 atomic regions from SNP 134467 to 135067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,828 DEBUG Processing 674/871 atomic regions from SNP 202173 to 202773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,829 DEBUG Processing 634/918 atomic regions from SNP 190157 to 190757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,958 DEBUG Processing 501/1146 atomic regions from SNP 150279 to 150879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,048 DEBUG Processing 52/237 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:28,066 DEBUG Processing 547/1038 atomic regions from SNP 163975 to 164575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,082 DEBUG Processing 675/871 atomic regions from SNP 202473 to 203073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,083 DEBUG Processing 450/659 atomic regions from SNP 134767 to 135367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,091 DEBUG Processing 635/918 atomic regions from SNP 190457 to 191057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,291 DEBUG Processing 502/1146 atomic regions from SNP 150579 to 151179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,321 DEBUG Processing 53/237 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:28,344 DEBUG Processing 676/871 atomic regions from SNP 202773 to 203373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,363 DEBUG Processing 451/659 atomic regions from SNP 135067 to 135667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,364 DEBUG Processing 548/1038 atomic regions from SNP 164275 to 164875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,364 DEBUG Processing 636/918 atomic regions from SNP 190757 to 191357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,598 DEBUG Processing 54/237 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:28,617 DEBUG Processing 677/871 atomic regions from SNP 203073 to 203673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,623 DEBUG Processing 503/1146 atomic regions from SNP 150879 to 151479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,632 DEBUG Processing 452/659 atomic regions from SNP 135367 to 135967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,633 DEBUG Processing 637/918 atomic regions from SNP 191057 to 191657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,676 DEBUG Processing 549/1038 atomic regions from SNP 164575 to 165175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,872 DEBUG Processing 55/237 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:28,908 DEBUG Processing 678/871 atomic regions from SNP 203373 to 203973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,910 DEBUG Processing 638/918 atomic regions from SNP 191357 to 191957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,921 DEBUG Processing 453/659 atomic regions from SNP 135667 to 136267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,968 DEBUG Processing 504/1146 atomic regions from SNP 151179 to 151779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,972 DEBUG Processing 550/1038 atomic regions from SNP 164875 to 165475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,138 DEBUG Processing 56/237 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:29,173 DEBUG Processing 639/918 atomic regions from SNP 191657 to 192257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,184 DEBUG Processing 679/871 atomic regions from SNP 203673 to 204273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,205 DEBUG Processing 454/659 atomic regions from SNP 135967 to 136567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,254 DEBUG Processing 551/1038 atomic regions from SNP 165175 to 165775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,301 DEBUG Processing 505/1146 atomic regions from SNP 151479 to 152079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,405 DEBUG Processing 57/237 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:29,443 DEBUG Processing 640/918 atomic regions from SNP 191957 to 192557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,476 DEBUG Processing 680/871 atomic regions from SNP 203973 to 204573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,487 DEBUG Processing 455/659 atomic regions from SNP 136267 to 136867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,532 DEBUG Processing 552/1038 atomic regions from SNP 165475 to 166075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,626 DEBUG Processing 506/1146 atomic regions from SNP 151779 to 152379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,674 DEBUG Processing 58/237 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:29,710 DEBUG Processing 641/918 atomic regions from SNP 192257 to 192857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,759 DEBUG Processing 456/659 atomic regions from SNP 136567 to 137167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,770 DEBUG Processing 681/871 atomic regions from SNP 204273 to 204873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,809 DEBUG Processing 553/1038 atomic regions from SNP 165775 to 166375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,939 DEBUG Processing 59/237 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:29,945 DEBUG Processing 507/1146 atomic regions from SNP 152079 to 152679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,971 DEBUG Processing 642/918 atomic regions from SNP 192557 to 193157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,009 DEBUG Processing 457/659 atomic regions from SNP 136867 to 137467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,050 DEBUG Processing 682/871 atomic regions from SNP 204573 to 205173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,086 DEBUG Processing 554/1038 atomic regions from SNP 166075 to 166675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,198 DEBUG Processing 60/237 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:30,226 DEBUG Processing 643/918 atomic regions from SNP 192857 to 193457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,256 DEBUG Processing 508/1146 atomic regions from SNP 152379 to 152979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,257 DEBUG Processing 458/659 atomic regions from SNP 137167 to 137767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,317 DEBUG Processing 683/871 atomic regions from SNP 204873 to 205473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,359 DEBUG Processing 555/1038 atomic regions from SNP 166375 to 166975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,455 DEBUG Processing 61/237 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:30,483 DEBUG Processing 644/918 atomic regions from SNP 193157 to 193757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,501 DEBUG Processing 459/659 atomic regions from SNP 137467 to 138067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,566 DEBUG Processing 509/1146 atomic regions from SNP 152679 to 153279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,588 DEBUG Processing 684/871 atomic regions from SNP 205173 to 205773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,632 DEBUG Processing 556/1038 atomic regions from SNP 166675 to 167275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,712 DEBUG Processing 62/237 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:30,731 DEBUG Processing 645/918 atomic regions from SNP 193457 to 194057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,741 DEBUG Processing 460/659 atomic regions from SNP 137767 to 138367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,867 DEBUG Processing 510/1146 atomic regions from SNP 152979 to 153579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,869 DEBUG Processing 685/871 atomic regions from SNP 205473 to 206073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,903 DEBUG Processing 557/1038 atomic regions from SNP 166975 to 167575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,969 DEBUG Processing 63/237 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:30,982 DEBUG Processing 461/659 atomic regions from SNP 138067 to 138667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,987 DEBUG Processing 646/918 atomic regions from SNP 193757 to 194357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,140 DEBUG Processing 686/871 atomic regions from SNP 205773 to 206373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,159 DEBUG Processing 511/1146 atomic regions from SNP 153279 to 153879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,170 DEBUG Processing 558/1038 atomic regions from SNP 167275 to 167875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,229 DEBUG Processing 64/237 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:31,239 DEBUG Processing 462/659 atomic regions from SNP 138367 to 138967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,243 DEBUG Processing 647/918 atomic regions from SNP 194057 to 194657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,415 DEBUG Processing 687/871 atomic regions from SNP 206073 to 206673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,442 DEBUG Processing 559/1038 atomic regions from SNP 167575 to 168175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,461 DEBUG Processing 512/1146 atomic regions from SNP 153579 to 154179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,488 DEBUG Processing 65/237 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:31,505 DEBUG Processing 648/918 atomic regions from SNP 194357 to 194957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,511 DEBUG Processing 463/659 atomic regions from SNP 138667 to 139267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,685 DEBUG Processing 688/871 atomic regions from SNP 206373 to 206973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,715 DEBUG Processing 560/1038 atomic regions from SNP 167875 to 168475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,748 DEBUG Processing 66/237 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:31,765 DEBUG Processing 649/918 atomic regions from SNP 194657 to 195257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,776 DEBUG Processing 513/1146 atomic regions from SNP 153879 to 154479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,781 DEBUG Processing 464/659 atomic regions from SNP 138967 to 139567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,967 DEBUG Processing 689/871 atomic regions from SNP 206673 to 207273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,995 DEBUG Processing 561/1038 atomic regions from SNP 168175 to 168775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,003 DEBUG Processing 67/237 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:32,031 DEBUG Processing 650/918 atomic regions from SNP 194957 to 195557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,051 DEBUG Processing 465/659 atomic regions from SNP 139267 to 139867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,099 DEBUG Processing 514/1146 atomic regions from SNP 154179 to 154779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,252 DEBUG Processing 690/871 atomic regions from SNP 206973 to 207573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,259 DEBUG Processing 68/237 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:32,281 DEBUG Processing 562/1038 atomic regions from SNP 168475 to 169075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,292 DEBUG Processing 651/918 atomic regions from SNP 195257 to 195857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,304 DEBUG Processing 466/659 atomic regions from SNP 139567 to 140167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,414 DEBUG Processing 515/1146 atomic regions from SNP 154479 to 155079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,512 DEBUG Processing 69/237 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:32,530 DEBUG Processing 691/871 atomic regions from SNP 207273 to 207873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,556 DEBUG Processing 652/918 atomic regions from SNP 195557 to 196157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,562 DEBUG Processing 563/1038 atomic regions from SNP 168775 to 169375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,568 DEBUG Processing 467/659 atomic regions from SNP 139867 to 140467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,736 DEBUG Processing 516/1146 atomic regions from SNP 154779 to 155379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,770 DEBUG Processing 70/237 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:32,808 DEBUG Processing 692/871 atomic regions from SNP 207573 to 208173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,815 DEBUG Processing 653/918 atomic regions from SNP 195857 to 196457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,836 DEBUG Processing 468/659 atomic regions from SNP 140167 to 140767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,848 DEBUG Processing 564/1038 atomic regions from SNP 169075 to 169675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,032 DEBUG Processing 71/237 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:33,067 DEBUG Processing 517/1146 atomic regions from SNP 155079 to 155679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,082 DEBUG Processing 693/871 atomic regions from SNP 207873 to 208473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,092 DEBUG Processing 654/918 atomic regions from SNP 196157 to 196757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,109 DEBUG Processing 469/659 atomic regions from SNP 140467 to 141067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,136 DEBUG Processing 565/1038 atomic regions from SNP 169375 to 169975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,289 DEBUG Processing 72/237 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:33,358 DEBUG Processing 470/659 atomic regions from SNP 140767 to 141367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,365 DEBUG Processing 694/871 atomic regions from SNP 208173 to 208773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,376 DEBUG Processing 655/918 atomic regions from SNP 196457 to 197057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,404 DEBUG Processing 518/1146 atomic regions from SNP 155379 to 155979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,415 DEBUG Processing 566/1038 atomic regions from SNP 169675 to 170275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,540 DEBUG Processing 73/237 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:33,595 DEBUG Processing 471/659 atomic regions from SNP 141067 to 141667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,635 DEBUG Processing 695/871 atomic regions from SNP 208473 to 209073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,648 DEBUG Processing 656/918 atomic regions from SNP 196757 to 197357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,692 DEBUG Processing 567/1038 atomic regions from SNP 169975 to 170575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,732 DEBUG Processing 519/1146 atomic regions from SNP 155679 to 156279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,787 DEBUG Processing 74/237 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:33,832 DEBUG Processing 472/659 atomic regions from SNP 141367 to 141967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,913 DEBUG Processing 696/871 atomic regions from SNP 208773 to 209373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,921 DEBUG Processing 657/918 atomic regions from SNP 197057 to 197657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,977 DEBUG Processing 568/1038 atomic regions from SNP 170275 to 170875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,038 DEBUG Processing 75/237 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:34,047 DEBUG Processing 520/1146 atomic regions from SNP 155979 to 156579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,086 DEBUG Processing 473/659 atomic regions from SNP 141667 to 142267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,195 DEBUG Processing 697/871 atomic regions from SNP 209073 to 209673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,205 DEBUG Processing 658/918 atomic regions from SNP 197357 to 197957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,249 DEBUG Processing 569/1038 atomic regions from SNP 170575 to 171175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,294 DEBUG Processing 76/237 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:34,356 DEBUG Processing 521/1146 atomic regions from SNP 156279 to 156879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,357 DEBUG Processing 474/659 atomic regions from SNP 141967 to 142567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,464 DEBUG Processing 698/871 atomic regions from SNP 209373 to 209973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,494 DEBUG Processing 659/918 atomic regions from SNP 197657 to 198257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,512 DEBUG Processing 570/1038 atomic regions from SNP 170875 to 171475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,550 DEBUG Processing 77/237 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:34,635 DEBUG Processing 475/659 atomic regions from SNP 142267 to 142867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,679 DEBUG Processing 522/1146 atomic regions from SNP 156579 to 157179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,731 DEBUG Processing 699/871 atomic regions from SNP 209673 to 210273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,769 DEBUG Processing 660/918 atomic regions from SNP 197957 to 198557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,778 DEBUG Processing 571/1038 atomic regions from SNP 171175 to 171775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,800 DEBUG Processing 78/237 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:34,913 DEBUG Processing 476/659 atomic regions from SNP 142567 to 143167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,991 DEBUG Processing 700/871 atomic regions from SNP 209973 to 210573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,005 DEBUG Processing 523/1146 atomic regions from SNP 156879 to 157479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,046 DEBUG Processing 661/918 atomic regions from SNP 198257 to 198857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,048 DEBUG Processing 572/1038 atomic regions from SNP 171475 to 172075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,050 DEBUG Processing 79/237 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:35,181 DEBUG Processing 477/659 atomic regions from SNP 142867 to 143467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,254 DEBUG Processing 701/871 atomic regions from SNP 210273 to 210873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,306 DEBUG Processing 80/237 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:35,324 DEBUG Processing 662/918 atomic regions from SNP 198557 to 199157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,333 DEBUG Processing 573/1038 atomic regions from SNP 171775 to 172375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,342 DEBUG Processing 524/1146 atomic regions from SNP 157179 to 157779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,441 DEBUG Processing 478/659 atomic regions from SNP 143167 to 143767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,540 DEBUG Processing 702/871 atomic regions from SNP 210573 to 211173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,576 DEBUG Processing 81/237 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:35,584 DEBUG Processing 663/918 atomic regions from SNP 198857 to 199457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,612 DEBUG Processing 574/1038 atomic regions from SNP 172075 to 172675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,672 DEBUG Processing 525/1146 atomic regions from SNP 157479 to 158079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,702 DEBUG Processing 479/659 atomic regions from SNP 143467 to 144067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,834 DEBUG Processing 703/871 atomic regions from SNP 210873 to 211473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,842 DEBUG Processing 664/918 atomic regions from SNP 199157 to 199757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,856 DEBUG Processing 82/237 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:35,890 DEBUG Processing 575/1038 atomic regions from SNP 172375 to 172975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,957 DEBUG Processing 480/659 atomic regions from SNP 143767 to 144367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,995 DEBUG Processing 526/1146 atomic regions from SNP 157779 to 158379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,103 DEBUG Processing 665/918 atomic regions from SNP 199457 to 200057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,110 DEBUG Processing 83/237 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:36,118 DEBUG Processing 704/871 atomic regions from SNP 211173 to 211773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,168 DEBUG Processing 576/1038 atomic regions from SNP 172675 to 173275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,216 DEBUG Processing 481/659 atomic regions from SNP 144067 to 144667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,326 DEBUG Processing 527/1146 atomic regions from SNP 158079 to 158679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,361 DEBUG Processing 666/918 atomic regions from SNP 199757 to 200357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,365 DEBUG Processing 84/237 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:36,412 DEBUG Processing 705/871 atomic regions from SNP 211473 to 212073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,441 DEBUG Processing 577/1038 atomic regions from SNP 172975 to 173575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,484 DEBUG Processing 482/659 atomic regions from SNP 144367 to 144967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,613 DEBUG Processing 667/918 atomic regions from SNP 200057 to 200657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,617 DEBUG Processing 85/237 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:36,658 DEBUG Processing 528/1146 atomic regions from SNP 158379 to 158979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,683 DEBUG Processing 706/871 atomic regions from SNP 211773 to 212373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,714 DEBUG Processing 578/1038 atomic regions from SNP 173275 to 173875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,764 DEBUG Processing 483/659 atomic regions from SNP 144667 to 145267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,860 DEBUG Processing 668/918 atomic regions from SNP 200357 to 200957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,878 DEBUG Processing 86/237 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:36,960 DEBUG Processing 707/871 atomic regions from SNP 212073 to 212673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,996 DEBUG Processing 579/1038 atomic regions from SNP 173575 to 174175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,996 DEBUG Processing 529/1146 atomic regions from SNP 158679 to 159279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,039 DEBUG Processing 484/659 atomic regions from SNP 144967 to 145567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,105 DEBUG Processing 669/918 atomic regions from SNP 200657 to 201257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,135 DEBUG Processing 87/237 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:37,237 DEBUG Processing 708/871 atomic regions from SNP 212373 to 212973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,279 DEBUG Processing 580/1038 atomic regions from SNP 173875 to 174475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,298 DEBUG Processing 485/659 atomic regions from SNP 145267 to 145867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,331 DEBUG Processing 530/1146 atomic regions from SNP 158979 to 159579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,354 DEBUG Processing 670/918 atomic regions from SNP 200957 to 201557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,397 DEBUG Processing 88/237 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:37,513 DEBUG Processing 709/871 atomic regions from SNP 212673 to 213273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,556 DEBUG Processing 581/1038 atomic regions from SNP 174175 to 174775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,558 DEBUG Processing 486/659 atomic regions from SNP 145567 to 146167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,608 DEBUG Processing 671/918 atomic regions from SNP 201257 to 201857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,657 DEBUG Processing 89/237 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:37,661 DEBUG Processing 531/1146 atomic regions from SNP 159279 to 159879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,788 DEBUG Processing 710/871 atomic regions from SNP 212973 to 213573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,807 DEBUG Processing 487/659 atomic regions from SNP 145867 to 146467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,825 DEBUG Processing 582/1038 atomic regions from SNP 174475 to 175075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,859 DEBUG Processing 672/918 atomic regions from SNP 201557 to 202157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,919 DEBUG Processing 90/237 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:37,999 DEBUG Processing 532/1146 atomic regions from SNP 159579 to 160179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,051 DEBUG Processing 488/659 atomic regions from SNP 146167 to 146767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,067 DEBUG Processing 711/871 atomic regions from SNP 213273 to 213873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,100 DEBUG Processing 583/1038 atomic regions from SNP 174775 to 175375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,116 DEBUG Processing 673/918 atomic regions from SNP 201857 to 202457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,177 DEBUG Processing 91/237 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:38,316 DEBUG Processing 489/659 atomic regions from SNP 146467 to 147067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,341 DEBUG Processing 533/1146 atomic regions from SNP 159879 to 160479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,351 DEBUG Processing 712/871 atomic regions from SNP 213573 to 214173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,389 DEBUG Processing 674/918 atomic regions from SNP 202157 to 202757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,398 DEBUG Processing 584/1038 atomic regions from SNP 175075 to 175675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,439 DEBUG Processing 92/237 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:38,581 DEBUG Processing 490/659 atomic regions from SNP 146767 to 147367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,614 DEBUG Processing 713/871 atomic regions from SNP 213873 to 214473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,649 DEBUG Processing 675/918 atomic regions from SNP 202457 to 203057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,678 DEBUG Processing 585/1038 atomic regions from SNP 175375 to 175975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,682 DEBUG Processing 534/1146 atomic regions from SNP 160179 to 160779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,700 DEBUG Processing 93/237 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:38,827 DEBUG Processing 491/659 atomic regions from SNP 147067 to 147667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,867 DEBUG Processing 714/871 atomic regions from SNP 214173 to 214773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,906 DEBUG Processing 676/918 atomic regions from SNP 202757 to 203357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,957 DEBUG Processing 586/1038 atomic regions from SNP 175675 to 176275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,964 DEBUG Processing 94/237 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:39,024 DEBUG Processing 535/1146 atomic regions from SNP 160479 to 161079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,065 DEBUG Processing 492/659 atomic regions from SNP 147367 to 147967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,110 DEBUG Processing 715/871 atomic regions from SNP 214473 to 215073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,162 DEBUG Processing 677/918 atomic regions from SNP 203057 to 203657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,224 DEBUG Processing 95/237 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:39,234 DEBUG Processing 587/1038 atomic regions from SNP 175975 to 176575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,305 DEBUG Processing 493/659 atomic regions from SNP 147667 to 148267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,356 DEBUG Processing 716/871 atomic regions from SNP 214773 to 215373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,364 DEBUG Processing 536/1146 atomic regions from SNP 160779 to 161379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,414 DEBUG Processing 678/918 atomic regions from SNP 203357 to 203957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,481 DEBUG Processing 96/237 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:39,505 DEBUG Processing 588/1038 atomic regions from SNP 176275 to 176875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,551 DEBUG Processing 494/659 atomic regions from SNP 147967 to 148567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,601 DEBUG Processing 717/871 atomic regions from SNP 215073 to 215673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,664 DEBUG Processing 679/918 atomic regions from SNP 203657 to 204257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,698 DEBUG Processing 537/1146 atomic regions from SNP 161079 to 161679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,744 DEBUG Processing 97/237 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:39,788 DEBUG Processing 589/1038 atomic regions from SNP 176575 to 177175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,801 DEBUG Processing 495/659 atomic regions from SNP 148267 to 148867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,848 DEBUG Processing 718/871 atomic regions from SNP 215373 to 215973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,909 DEBUG Processing 680/918 atomic regions from SNP 203957 to 204557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,015 DEBUG Processing 98/237 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:40,039 DEBUG Processing 538/1146 atomic regions from SNP 161379 to 161979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,051 DEBUG Processing 496/659 atomic regions from SNP 148567 to 149167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,081 DEBUG Processing 590/1038 atomic regions from SNP 176875 to 177475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,096 DEBUG Processing 719/871 atomic regions from SNP 215673 to 216273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,156 DEBUG Processing 681/918 atomic regions from SNP 204257 to 204857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,283 DEBUG Processing 99/237 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:40,305 DEBUG Processing 497/659 atomic regions from SNP 148867 to 149467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,353 DEBUG Processing 720/871 atomic regions from SNP 215973 to 216573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,373 DEBUG Processing 591/1038 atomic regions from SNP 177175 to 177775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,390 DEBUG Processing 539/1146 atomic regions from SNP 161679 to 162279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,406 DEBUG Processing 682/918 atomic regions from SNP 204557 to 205157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,542 DEBUG Processing 100/237 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:40,570 DEBUG Processing 498/659 atomic regions from SNP 149167 to 149767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,608 DEBUG Processing 721/871 atomic regions from SNP 216273 to 216873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,660 DEBUG Processing 683/918 atomic regions from SNP 204857 to 205457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,662 DEBUG Processing 592/1038 atomic regions from SNP 177475 to 178075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,726 DEBUG Processing 540/1146 atomic regions from SNP 161979 to 162579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,799 DEBUG Processing 101/237 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:40,844 DEBUG Processing 499/659 atomic regions from SNP 149467 to 150067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,857 DEBUG Processing 722/871 atomic regions from SNP 216573 to 217173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,918 DEBUG Processing 684/918 atomic regions from SNP 205157 to 205757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,942 DEBUG Processing 593/1038 atomic regions from SNP 177775 to 178375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,037 DEBUG Processing 541/1146 atomic regions from SNP 162279 to 162879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,061 DEBUG Processing 102/237 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:41,107 DEBUG Processing 723/871 atomic regions from SNP 216873 to 217473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,116 DEBUG Processing 500/659 atomic regions from SNP 149767 to 150367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,176 DEBUG Processing 685/918 atomic regions from SNP 205457 to 206057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,219 DEBUG Processing 594/1038 atomic regions from SNP 178075 to 178675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,321 DEBUG Processing 103/237 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:41,336 DEBUG Processing 542/1146 atomic regions from SNP 162579 to 163179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,359 DEBUG Processing 724/871 atomic regions from SNP 217173 to 217773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,396 DEBUG Processing 501/659 atomic regions from SNP 150067 to 150667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,433 DEBUG Processing 686/918 atomic regions from SNP 205757 to 206357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,489 DEBUG Processing 595/1038 atomic regions from SNP 178375 to 178975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,587 DEBUG Processing 104/237 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:41,611 DEBUG Processing 725/871 atomic regions from SNP 217473 to 218073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,641 DEBUG Processing 543/1146 atomic regions from SNP 162879 to 163479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,674 DEBUG Processing 502/659 atomic regions from SNP 150367 to 150967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,708 DEBUG Processing 687/918 atomic regions from SNP 206057 to 206657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,756 DEBUG Processing 596/1038 atomic regions from SNP 178675 to 179275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,846 DEBUG Processing 105/237 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:41,857 DEBUG Processing 726/871 atomic regions from SNP 217773 to 218373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,945 DEBUG Processing 544/1146 atomic regions from SNP 163179 to 163779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,951 DEBUG Processing 503/659 atomic regions from SNP 150667 to 151267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,994 DEBUG Processing 688/918 atomic regions from SNP 206357 to 206957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,023 DEBUG Processing 597/1038 atomic regions from SNP 178975 to 179575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,093 DEBUG Processing 727/871 atomic regions from SNP 218073 to 218673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,094 DEBUG Processing 106/237 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:42,217 DEBUG Processing 504/659 atomic regions from SNP 150967 to 151567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,244 DEBUG Processing 545/1146 atomic regions from SNP 163479 to 164079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,276 DEBUG Processing 689/918 atomic regions from SNP 206657 to 207257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,299 DEBUG Processing 598/1038 atomic regions from SNP 179275 to 179875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,334 DEBUG Processing 728/871 atomic regions from SNP 218373 to 218973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,346 DEBUG Processing 107/237 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:42,492 DEBUG Processing 505/659 atomic regions from SNP 151267 to 151867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,549 DEBUG Processing 546/1146 atomic regions from SNP 163779 to 164379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,555 DEBUG Processing 690/918 atomic regions from SNP 206957 to 207557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,581 DEBUG Processing 599/1038 atomic regions from SNP 179575 to 180175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,583 DEBUG Processing 729/871 atomic regions from SNP 218673 to 219273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,605 DEBUG Processing 108/237 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:42,741 DEBUG Processing 506/659 atomic regions from SNP 151567 to 152167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,835 DEBUG Processing 691/918 atomic regions from SNP 207257 to 207857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,839 DEBUG Processing 730/871 atomic regions from SNP 218973 to 219573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,859 DEBUG Processing 547/1146 atomic regions from SNP 164079 to 164679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,869 DEBUG Processing 109/237 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:42,875 DEBUG Processing 600/1038 atomic regions from SNP 179875 to 180475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,988 DEBUG Processing 507/659 atomic regions from SNP 151867 to 152467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,090 DEBUG Processing 731/871 atomic regions from SNP 219273 to 219873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,112 DEBUG Processing 692/918 atomic regions from SNP 207557 to 208157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,137 DEBUG Processing 110/237 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:43,168 DEBUG Processing 548/1146 atomic regions from SNP 164379 to 164979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,172 DEBUG Processing 601/1038 atomic regions from SNP 180175 to 180775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,241 DEBUG Processing 508/659 atomic regions from SNP 152167 to 152767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,335 DEBUG Processing 732/871 atomic regions from SNP 219573 to 220173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,391 DEBUG Processing 693/918 atomic regions from SNP 207857 to 208457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,403 DEBUG Processing 111/237 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:43,466 DEBUG Processing 602/1038 atomic regions from SNP 180475 to 181075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,471 DEBUG Processing 549/1146 atomic regions from SNP 164679 to 165279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,503 DEBUG Processing 509/659 atomic regions from SNP 152467 to 153067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,598 DEBUG Processing 733/871 atomic regions from SNP 219873 to 220473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,666 DEBUG Processing 112/237 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:43,679 DEBUG Processing 694/918 atomic regions from SNP 208157 to 208757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,755 DEBUG Processing 603/1038 atomic regions from SNP 180775 to 181375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,762 DEBUG Processing 510/659 atomic regions from SNP 152767 to 153367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,772 DEBUG Processing 550/1146 atomic regions from SNP 164979 to 165579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,853 DEBUG Processing 734/871 atomic regions from SNP 220173 to 220773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,919 DEBUG Processing 113/237 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:43,954 DEBUG Processing 695/918 atomic regions from SNP 208457 to 209057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,025 DEBUG Processing 511/659 atomic regions from SNP 153067 to 153667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,051 DEBUG Processing 604/1038 atomic regions from SNP 181075 to 181675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,075 DEBUG Processing 551/1146 atomic regions from SNP 165279 to 165879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,092 DEBUG Processing 735/871 atomic regions from SNP 220473 to 221073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,167 DEBUG Processing 114/237 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:44,220 DEBUG Processing 696/918 atomic regions from SNP 208757 to 209357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,296 DEBUG Processing 512/659 atomic regions from SNP 153367 to 153967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,347 DEBUG Processing 736/871 atomic regions from SNP 220773 to 221373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,356 DEBUG Processing 605/1038 atomic regions from SNP 181375 to 181975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,382 DEBUG Processing 552/1146 atomic regions from SNP 165579 to 166179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,414 DEBUG Processing 115/237 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:44,459 DEBUG Processing 697/918 atomic regions from SNP 209057 to 209657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,558 DEBUG Processing 513/659 atomic regions from SNP 153667 to 154267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,612 DEBUG Processing 737/871 atomic regions from SNP 221073 to 221673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,653 DEBUG Processing 606/1038 atomic regions from SNP 181675 to 182275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,670 DEBUG Processing 116/237 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:44,684 DEBUG Processing 553/1146 atomic regions from SNP 165879 to 166479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,705 DEBUG Processing 698/918 atomic regions from SNP 209357 to 209957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,818 DEBUG Processing 514/659 atomic regions from SNP 153967 to 154567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,889 DEBUG Processing 738/871 atomic regions from SNP 221373 to 221973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,930 DEBUG Processing 117/237 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:44,935 DEBUG Processing 607/1038 atomic regions from SNP 181975 to 182575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,975 DEBUG Processing 699/918 atomic regions from SNP 209657 to 210257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,985 DEBUG Processing 554/1146 atomic regions from SNP 166179 to 166779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,069 DEBUG Processing 515/659 atomic regions from SNP 154267 to 154867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,169 DEBUG Processing 739/871 atomic regions from SNP 221673 to 222273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,190 DEBUG Processing 118/237 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:45,204 DEBUG Processing 608/1038 atomic regions from SNP 182275 to 182875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,246 DEBUG Processing 700/918 atomic regions from SNP 209957 to 210557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,292 DEBUG Processing 555/1146 atomic regions from SNP 166479 to 167079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,332 DEBUG Processing 516/659 atomic regions from SNP 154567 to 155167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,443 DEBUG Processing 740/871 atomic regions from SNP 221973 to 222573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,446 DEBUG Processing 119/237 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:45,472 DEBUG Processing 609/1038 atomic regions from SNP 182575 to 183175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,527 DEBUG Processing 701/918 atomic regions from SNP 210257 to 210857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,596 DEBUG Processing 556/1146 atomic regions from SNP 166779 to 167379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,600 DEBUG Processing 517/659 atomic regions from SNP 154867 to 155467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,703 DEBUG Processing 120/237 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:45,710 DEBUG Processing 741/871 atomic regions from SNP 222273 to 222873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,748 DEBUG Processing 610/1038 atomic regions from SNP 182875 to 183475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,801 DEBUG Processing 702/918 atomic regions from SNP 210557 to 211157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,868 DEBUG Processing 518/659 atomic regions from SNP 155167 to 155767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,894 DEBUG Processing 557/1146 atomic regions from SNP 167079 to 167679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,960 DEBUG Processing 742/871 atomic regions from SNP 222573 to 223173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,962 DEBUG Processing 121/237 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:46,031 DEBUG Processing 611/1038 atomic regions from SNP 183175 to 183775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,059 DEBUG Processing 703/918 atomic regions from SNP 210857 to 211457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,133 DEBUG Processing 519/659 atomic regions from SNP 155467 to 156067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,194 DEBUG Processing 558/1146 atomic regions from SNP 167379 to 167979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,204 DEBUG Processing 743/871 atomic regions from SNP 222873 to 223473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,220 DEBUG Processing 122/237 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:46,309 DEBUG Processing 612/1038 atomic regions from SNP 183475 to 184075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,309 DEBUG Processing 704/918 atomic regions from SNP 211157 to 211757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,407 DEBUG Processing 520/659 atomic regions from SNP 155767 to 156367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,445 DEBUG Processing 744/871 atomic regions from SNP 223173 to 223773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,482 DEBUG Processing 123/237 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:46,497 DEBUG Processing 559/1146 atomic regions from SNP 167679 to 168279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,562 DEBUG Processing 705/918 atomic regions from SNP 211457 to 212057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,587 DEBUG Processing 613/1038 atomic regions from SNP 183775 to 184375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,681 DEBUG Processing 521/659 atomic regions from SNP 156067 to 156667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,683 DEBUG Processing 745/871 atomic regions from SNP 223473 to 224073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,743 DEBUG Processing 124/237 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:46,798 DEBUG Processing 560/1146 atomic regions from SNP 167979 to 168579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,810 DEBUG Processing 706/918 atomic regions from SNP 211757 to 212357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,861 DEBUG Processing 614/1038 atomic regions from SNP 184075 to 184675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,927 DEBUG Processing 746/871 atomic regions from SNP 223773 to 224373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,958 DEBUG Processing 522/659 atomic regions from SNP 156367 to 156967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,008 DEBUG Processing 125/237 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:47,062 DEBUG Processing 707/918 atomic regions from SNP 212057 to 212657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,119 DEBUG Processing 561/1146 atomic regions from SNP 168279 to 168879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,137 DEBUG Processing 615/1038 atomic regions from SNP 184375 to 184975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,175 DEBUG Processing 747/871 atomic regions from SNP 224073 to 224673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,228 DEBUG Processing 523/659 atomic regions from SNP 156667 to 157267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,278 DEBUG Processing 126/237 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:47,303 DEBUG Processing 708/918 atomic regions from SNP 212357 to 212957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,413 DEBUG Processing 616/1038 atomic regions from SNP 184675 to 185275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,425 DEBUG Processing 562/1146 atomic regions from SNP 168579 to 169179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,427 DEBUG Processing 748/871 atomic regions from SNP 224373 to 224973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,498 DEBUG Processing 524/659 atomic regions from SNP 156967 to 157567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,534 DEBUG Processing 127/237 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:47,546 DEBUG Processing 709/918 atomic regions from SNP 212657 to 213257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,676 DEBUG Processing 749/871 atomic regions from SNP 224673 to 225273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,688 DEBUG Processing 617/1038 atomic regions from SNP 184975 to 185575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,727 DEBUG Processing 563/1146 atomic regions from SNP 168879 to 169479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,774 DEBUG Processing 525/659 atomic regions from SNP 157267 to 157867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,790 DEBUG Processing 128/237 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:47,793 DEBUG Processing 710/918 atomic regions from SNP 212957 to 213557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,922 DEBUG Processing 750/871 atomic regions from SNP 224973 to 225573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,963 DEBUG Processing 618/1038 atomic regions from SNP 185275 to 185875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,033 DEBUG Processing 564/1146 atomic regions from SNP 169179 to 169779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,043 DEBUG Processing 711/918 atomic regions from SNP 213257 to 213857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,048 DEBUG Processing 526/659 atomic regions from SNP 157567 to 158167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,057 DEBUG Processing 129/237 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:48,162 DEBUG Processing 751/871 atomic regions from SNP 225273 to 225873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:48,240 DEBUG Processing 619/1038 atomic regions from SNP 185575 to 186175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,290 DEBUG Processing 712/918 atomic regions from SNP 213557 to 214157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,320 DEBUG Processing 527/659 atomic regions from SNP 157867 to 158467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,320 DEBUG Processing 130/237 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:48,336 DEBUG Processing 565/1146 atomic regions from SNP 169479 to 170079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,412 DEBUG Processing 752/871 atomic regions from SNP 225573 to 226173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:48,522 DEBUG Processing 620/1038 atomic regions from SNP 185875 to 186475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,549 DEBUG Processing 713/918 atomic regions from SNP 213857 to 214457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,582 DEBUG Processing 131/237 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:48,606 DEBUG Processing 528/659 atomic regions from SNP 158167 to 158767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,641 DEBUG Processing 566/1146 atomic regions from SNP 169779 to 170379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,658 DEBUG Processing 753/871 atomic regions from SNP 225873 to 226473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:48,792 DEBUG Processing 621/1038 atomic regions from SNP 186175 to 186775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,801 DEBUG Processing 714/918 atomic regions from SNP 214157 to 214757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,841 DEBUG Processing 132/237 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:48,881 DEBUG Processing 529/659 atomic regions from SNP 158467 to 159067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,906 DEBUG Processing 754/871 atomic regions from SNP 226173 to 226773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:48,948 DEBUG Processing 567/1146 atomic regions from SNP 170079 to 170679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,055 DEBUG Processing 715/918 atomic regions from SNP 214457 to 215057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,064 DEBUG Processing 622/1038 atomic regions from SNP 186475 to 187075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,093 DEBUG Processing 133/237 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:49,150 DEBUG Processing 755/871 atomic regions from SNP 226473 to 227073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:49,160 DEBUG Processing 530/659 atomic regions from SNP 158767 to 159367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,253 DEBUG Processing 568/1146 atomic regions from SNP 170379 to 170979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,306 DEBUG Processing 716/918 atomic regions from SNP 214757 to 215357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,334 DEBUG Processing 623/1038 atomic regions from SNP 186775 to 187375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,346 DEBUG Processing 134/237 atomic regions from SNP 40033 to 40634 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:49,396 DEBUG Processing 756/871 atomic regions from SNP 226773 to 227373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:49,437 DEBUG Processing 531/659 atomic regions from SNP 159067 to 159667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,556 DEBUG Processing 569/1146 atomic regions from SNP 170679 to 171279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,557 DEBUG Processing 717/918 atomic regions from SNP 215057 to 215657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,608 DEBUG Processing 624/1038 atomic regions from SNP 187075 to 187675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,613 DEBUG Processing 135/237 atomic regions from SNP 40334 to 40935 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:49,640 DEBUG Processing 757/871 atomic regions from SNP 227073 to 227673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:49,700 DEBUG Processing 532/659 atomic regions from SNP 159367 to 159967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,804 DEBUG Processing 718/918 atomic regions from SNP 215357 to 215957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,854 DEBUG Processing 570/1146 atomic regions from SNP 170979 to 171579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,877 DEBUG Processing 625/1038 atomic regions from SNP 187375 to 187975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,885 DEBUG Processing 758/871 atomic regions from SNP 227373 to 227973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:49,892 DEBUG Processing 136/237 atomic regions from SNP 40635 to 41236 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:49,976 DEBUG Processing 533/659 atomic regions from SNP 159667 to 160267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,043 DEBUG Processing 719/918 atomic regions from SNP 215657 to 216257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,131 DEBUG Processing 759/871 atomic regions from SNP 227673 to 228273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:50,148 DEBUG Processing 626/1038 atomic regions from SNP 187675 to 188275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,155 DEBUG Processing 571/1146 atomic regions from SNP 171279 to 171879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,156 DEBUG Processing 137/237 atomic regions from SNP 40936 to 41537 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:50,246 DEBUG Processing 534/659 atomic regions from SNP 159967 to 160567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,286 DEBUG Processing 720/918 atomic regions from SNP 215957 to 216557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,375 DEBUG Processing 760/871 atomic regions from SNP 227973 to 228573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:50,416 DEBUG Processing 138/237 atomic regions from SNP 41237 to 41838 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:50,417 DEBUG Processing 627/1038 atomic regions from SNP 187975 to 188575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,454 DEBUG Processing 572/1146 atomic regions from SNP 171579 to 172179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,523 DEBUG Processing 535/659 atomic regions from SNP 160267 to 160867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,541 DEBUG Processing 721/918 atomic regions from SNP 216257 to 216857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,615 DEBUG Processing 761/871 atomic regions from SNP 228273 to 228873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:50,665 DEBUG Processing 139/237 atomic regions from SNP 41538 to 42139 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:50,686 DEBUG Processing 628/1038 atomic regions from SNP 188275 to 188875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,745 DEBUG Processing 573/1146 atomic regions from SNP 171879 to 172479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,801 DEBUG Processing 722/918 atomic regions from SNP 216557 to 217157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,802 DEBUG Processing 536/659 atomic regions from SNP 160567 to 161167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,861 DEBUG Processing 762/871 atomic regions from SNP 228573 to 229173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:50,921 DEBUG Processing 140/237 atomic regions from SNP 41839 to 42440 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:50,961 DEBUG Processing 629/1038 atomic regions from SNP 188575 to 189175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,036 DEBUG Processing 574/1146 atomic regions from SNP 172179 to 172779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,063 DEBUG Processing 723/918 atomic regions from SNP 216857 to 217457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,086 DEBUG Processing 537/659 atomic regions from SNP 160867 to 161467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,113 DEBUG Processing 763/871 atomic regions from SNP 228873 to 229473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:51,172 DEBUG Processing 141/237 atomic regions from SNP 42140 to 42741 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:51,225 DEBUG Processing 630/1038 atomic regions from SNP 188875 to 189475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,327 DEBUG Processing 575/1146 atomic regions from SNP 172479 to 173079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,330 DEBUG Processing 724/918 atomic regions from SNP 217157 to 217757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,369 DEBUG Processing 538/659 atomic regions from SNP 161167 to 161767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,372 DEBUG Processing 764/871 atomic regions from SNP 229173 to 229773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:51,426 DEBUG Processing 142/237 atomic regions from SNP 42441 to 43042 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:51,494 DEBUG Processing 631/1038 atomic regions from SNP 189175 to 189775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,610 DEBUG Processing 725/918 atomic regions from SNP 217457 to 218057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,622 DEBUG Processing 576/1146 atomic regions from SNP 172779 to 173379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,635 DEBUG Processing 539/659 atomic regions from SNP 161467 to 162067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,642 DEBUG Processing 765/871 atomic regions from SNP 229473 to 230073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:51,680 DEBUG Processing 143/237 atomic regions from SNP 42742 to 43343 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:51,768 DEBUG Processing 632/1038 atomic regions from SNP 189475 to 190075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,891 DEBUG Processing 726/918 atomic regions from SNP 217757 to 218357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,907 DEBUG Processing 540/659 atomic regions from SNP 161767 to 162367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,915 DEBUG Processing 577/1146 atomic regions from SNP 173079 to 173679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,920 DEBUG Processing 766/871 atomic regions from SNP 229773 to 230373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:51,933 DEBUG Processing 144/237 atomic regions from SNP 43043 to 43644 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:52,035 DEBUG Processing 633/1038 atomic regions from SNP 189775 to 190375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,167 DEBUG Processing 727/918 atomic regions from SNP 218057 to 218657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,182 DEBUG Processing 145/237 atomic regions from SNP 43344 to 43945 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:52,185 DEBUG Processing 541/659 atomic regions from SNP 162067 to 162667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,188 DEBUG Processing 767/871 atomic regions from SNP 230073 to 230673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:52,205 DEBUG Processing 578/1146 atomic regions from SNP 173379 to 173979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,295 DEBUG Processing 634/1038 atomic regions from SNP 190075 to 190675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,435 DEBUG Processing 146/237 atomic regions from SNP 43645 to 44246 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:52,449 DEBUG Processing 728/918 atomic regions from SNP 218357 to 218957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,465 DEBUG Processing 768/871 atomic regions from SNP 230373 to 230973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:52,467 DEBUG Processing 542/659 atomic regions from SNP 162367 to 162967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,499 DEBUG Processing 579/1146 atomic regions from SNP 173679 to 174279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,559 DEBUG Processing 635/1038 atomic regions from SNP 190375 to 190975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,686 DEBUG Processing 147/237 atomic regions from SNP 43946 to 44547 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:52,724 DEBUG Processing 729/918 atomic regions from SNP 218657 to 219257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,738 DEBUG Processing 543/659 atomic regions from SNP 162667 to 163267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,743 DEBUG Processing 769/871 atomic regions from SNP 230673 to 231273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:52,800 DEBUG Processing 580/1146 atomic regions from SNP 173979 to 174579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,848 DEBUG Processing 636/1038 atomic regions from SNP 190675 to 191275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,936 DEBUG Processing 148/237 atomic regions from SNP 44247 to 44847 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:52,978 DEBUG Processing 730/918 atomic regions from SNP 218957 to 219557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,013 DEBUG Processing 544/659 atomic regions from SNP 162967 to 163567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,022 DEBUG Processing 770/871 atomic regions from SNP 230973 to 231573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:53,102 DEBUG Processing 581/1146 atomic regions from SNP 174279 to 174879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,145 DEBUG Processing 637/1038 atomic regions from SNP 190975 to 191575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,177 DEBUG Processing 149/237 atomic regions from SNP 44547 to 45147 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:53,223 DEBUG Processing 731/918 atomic regions from SNP 219257 to 219857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,281 DEBUG Processing 545/659 atomic regions from SNP 163267 to 163867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,304 DEBUG Processing 771/871 atomic regions from SNP 231273 to 231873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:53,405 DEBUG Processing 582/1146 atomic regions from SNP 174579 to 175179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,429 DEBUG Processing 150/237 atomic regions from SNP 44847 to 45447 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:53,436 DEBUG Processing 638/1038 atomic regions from SNP 191275 to 191875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,464 DEBUG Processing 732/918 atomic regions from SNP 219557 to 220157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,550 DEBUG Processing 546/659 atomic regions from SNP 163567 to 164167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,577 DEBUG Processing 772/871 atomic regions from SNP 231573 to 232173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:53,685 DEBUG Processing 151/237 atomic regions from SNP 45147 to 45747 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:53,707 DEBUG Processing 583/1146 atomic regions from SNP 174879 to 175479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,712 DEBUG Processing 733/918 atomic regions from SNP 219857 to 220457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,733 DEBUG Processing 639/1038 atomic regions from SNP 191575 to 192175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,820 DEBUG Processing 547/659 atomic regions from SNP 163867 to 164467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,843 DEBUG Processing 773/871 atomic regions from SNP 231873 to 232473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:53,933 DEBUG Processing 152/237 atomic regions from SNP 45447 to 46047 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:53,965 DEBUG Processing 734/918 atomic regions from SNP 220157 to 220757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,007 DEBUG Processing 584/1146 atomic regions from SNP 175179 to 175779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,031 DEBUG Processing 640/1038 atomic regions from SNP 191875 to 192475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,068 DEBUG Processing 548/659 atomic regions from SNP 164167 to 164767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:54,093 DEBUG Processing 774/871 atomic regions from SNP 232173 to 232773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:54,168 DEBUG Processing 153/237 atomic regions from SNP 45747 to 46347 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:54,212 DEBUG Processing 735/918 atomic regions from SNP 220457 to 221057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,304 DEBUG Processing 585/1146 atomic regions from SNP 175479 to 176079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,331 DEBUG Processing 549/659 atomic regions from SNP 164467 to 165067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:54,333 DEBUG Processing 641/1038 atomic regions from SNP 192175 to 192775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,359 DEBUG Processing 775/871 atomic regions from SNP 232473 to 233073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:54,412 DEBUG Processing 154/237 atomic regions from SNP 46047 to 46647 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:54,455 DEBUG Processing 736/918 atomic regions from SNP 220757 to 221357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,594 DEBUG Processing 550/659 atomic regions from SNP 164767 to 165367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:54,597 DEBUG Processing 586/1146 atomic regions from SNP 175779 to 176379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,627 DEBUG Processing 776/871 atomic regions from SNP 232773 to 233373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:54,654 DEBUG Processing 155/237 atomic regions from SNP 46347 to 46947 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:54,714 DEBUG Processing 737/918 atomic regions from SNP 221057 to 221657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,718 DEBUG Processing 642/1038 atomic regions from SNP 192475 to 193075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,861 DEBUG Processing 551/659 atomic regions from SNP 165067 to 165667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:54,887 DEBUG Processing 587/1146 atomic regions from SNP 176079 to 176679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,902 DEBUG Processing 156/237 atomic regions from SNP 46647 to 47247 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:54,908 DEBUG Processing 777/871 atomic regions from SNP 233073 to 233673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:54,989 DEBUG Processing 643/1038 atomic regions from SNP 192775 to 193375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,991 DEBUG Processing 738/918 atomic regions from SNP 221357 to 221957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,127 DEBUG Processing 552/659 atomic regions from SNP 165367 to 165967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,153 DEBUG Processing 157/237 atomic regions from SNP 46947 to 47547 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:55,176 DEBUG Processing 588/1146 atomic regions from SNP 176379 to 176979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,192 DEBUG Processing 778/871 atomic regions from SNP 233373 to 233973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:55,258 DEBUG Processing 644/1038 atomic regions from SNP 193075 to 193675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,267 DEBUG Processing 739/918 atomic regions from SNP 221657 to 222257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,386 DEBUG Processing 553/659 atomic regions from SNP 165667 to 166267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,406 DEBUG Processing 158/237 atomic regions from SNP 47247 to 47847 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:55,462 DEBUG Processing 779/871 atomic regions from SNP 233673 to 234273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:55,481 DEBUG Processing 589/1146 atomic regions from SNP 176679 to 177279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,531 DEBUG Processing 645/1038 atomic regions from SNP 193375 to 193975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,547 DEBUG Processing 740/918 atomic regions from SNP 221957 to 222557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,652 DEBUG Processing 554/659 atomic regions from SNP 165967 to 166567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,658 DEBUG Processing 159/237 atomic regions from SNP 47547 to 48147 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:55,732 DEBUG Processing 780/871 atomic regions from SNP 233973 to 234573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:55,781 DEBUG Processing 590/1146 atomic regions from SNP 176979 to 177579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,797 DEBUG Processing 646/1038 atomic regions from SNP 193675 to 194275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,825 DEBUG Processing 741/918 atomic regions from SNP 222257 to 222857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,912 DEBUG Processing 160/237 atomic regions from SNP 47847 to 48447 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:55,928 DEBUG Processing 555/659 atomic regions from SNP 166267 to 166867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,993 DEBUG Processing 781/871 atomic regions from SNP 234273 to 234873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:56,064 DEBUG Processing 647/1038 atomic regions from SNP 193975 to 194575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,070 DEBUG Processing 591/1146 atomic regions from SNP 177279 to 177879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,098 DEBUG Processing 742/918 atomic regions from SNP 222557 to 223157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:56,156 DEBUG Processing 161/237 atomic regions from SNP 48147 to 48747 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:56,205 DEBUG Processing 556/659 atomic regions from SNP 166567 to 167167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:56,246 DEBUG Processing 782/871 atomic regions from SNP 234573 to 235173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:56,336 DEBUG Processing 648/1038 atomic regions from SNP 194275 to 194875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,358 DEBUG Processing 743/918 atomic regions from SNP 222857 to 223457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:56,365 DEBUG Processing 592/1146 atomic regions from SNP 177579 to 178179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,403 DEBUG Processing 162/237 atomic regions from SNP 48447 to 49047 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:56,475 DEBUG Processing 557/659 atomic regions from SNP 166867 to 167467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:56,516 DEBUG Processing 783/871 atomic regions from SNP 234873 to 235473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:56,609 DEBUG Processing 649/1038 atomic regions from SNP 194575 to 195175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,616 DEBUG Processing 744/918 atomic regions from SNP 223157 to 223757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:56,650 DEBUG Processing 163/237 atomic regions from SNP 48747 to 49347 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:56,656 DEBUG Processing 593/1146 atomic regions from SNP 177879 to 178479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,729 DEBUG Processing 558/659 atomic regions from SNP 167167 to 167767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:56,778 DEBUG Processing 784/871 atomic regions from SNP 235173 to 235773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:56,873 DEBUG Processing 745/918 atomic regions from SNP 223457 to 224057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:56,880 DEBUG Processing 650/1038 atomic regions from SNP 194875 to 195475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,895 DEBUG Processing 164/237 atomic regions from SNP 49047 to 49647 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:56,946 DEBUG Processing 594/1146 atomic regions from SNP 178179 to 178779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,995 DEBUG Processing 559/659 atomic regions from SNP 167467 to 168067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:57,050 DEBUG Processing 785/871 atomic regions from SNP 235473 to 236073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:57,127 DEBUG Processing 165/237 atomic regions from SNP 49347 to 49947 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:57,152 DEBUG Processing 651/1038 atomic regions from SNP 195175 to 195775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,153 DEBUG Processing 746/918 atomic regions from SNP 223757 to 224357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,225 DEBUG Processing 595/1146 atomic regions from SNP 178479 to 179079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,261 DEBUG Processing 560/659 atomic regions from SNP 167767 to 168367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:57,321 DEBUG Processing 786/871 atomic regions from SNP 235773 to 236373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:57,354 DEBUG Processing 166/237 atomic regions from SNP 49647 to 50247 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:57,417 DEBUG Processing 747/918 atomic regions from SNP 224057 to 224657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,417 DEBUG Processing 652/1038 atomic regions from SNP 195475 to 196075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,507 DEBUG Processing 596/1146 atomic regions from SNP 178779 to 179379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,520 DEBUG Processing 561/659 atomic regions from SNP 168067 to 168667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:57,586 DEBUG Processing 167/237 atomic regions from SNP 49947 to 50547 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:57,603 DEBUG Processing 787/871 atomic regions from SNP 236073 to 236673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:57,681 DEBUG Processing 748/918 atomic regions from SNP 224357 to 224957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,709 DEBUG Processing 653/1038 atomic regions from SNP 195775 to 196375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,774 DEBUG Processing 562/659 atomic regions from SNP 168367 to 168967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:57,788 DEBUG Processing 597/1146 atomic regions from SNP 179079 to 179679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,827 DEBUG Processing 168/237 atomic regions from SNP 50247 to 50847 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:57,870 DEBUG Processing 788/871 atomic regions from SNP 236373 to 236973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:57,943 DEBUG Processing 749/918 atomic regions from SNP 224657 to 225257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,989 DEBUG Processing 654/1038 atomic regions from SNP 196075 to 196675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,033 DEBUG Processing 563/659 atomic regions from SNP 168667 to 169267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:58,072 DEBUG Processing 169/237 atomic regions from SNP 50547 to 51147 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:58,073 DEBUG Processing 598/1146 atomic regions from SNP 179379 to 179979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,118 DEBUG Processing 789/871 atomic regions from SNP 236673 to 237273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:58,207 DEBUG Processing 750/918 atomic regions from SNP 224957 to 225557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,264 DEBUG Processing 655/1038 atomic regions from SNP 196375 to 196975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,297 DEBUG Processing 564/659 atomic regions from SNP 168967 to 169567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:58,322 DEBUG Processing 170/237 atomic regions from SNP 50847 to 51447 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:58,367 DEBUG Processing 599/1146 atomic regions from SNP 179679 to 180279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,393 DEBUG Processing 790/871 atomic regions from SNP 236973 to 237573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:58,484 DEBUG Processing 751/918 atomic regions from SNP 225257 to 225857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,539 DEBUG Processing 656/1038 atomic regions from SNP 196675 to 197275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,573 DEBUG Processing 171/237 atomic regions from SNP 51147 to 51747 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:58,574 DEBUG Processing 565/659 atomic regions from SNP 169267 to 169867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:58,643 DEBUG Processing 791/871 atomic regions from SNP 237273 to 237873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:58,658 DEBUG Processing 600/1146 atomic regions from SNP 179979 to 180579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,749 DEBUG Processing 752/918 atomic regions from SNP 225557 to 226157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,815 DEBUG Processing 172/237 atomic regions from SNP 51447 to 52047 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:58,815 DEBUG Processing 657/1038 atomic regions from SNP 196975 to 197575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,849 DEBUG Processing 566/659 atomic regions from SNP 169567 to 170167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:58,896 DEBUG Processing 792/871 atomic regions from SNP 237573 to 238173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:58,948 DEBUG Processing 601/1146 atomic regions from SNP 180279 to 180879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,011 DEBUG Processing 753/918 atomic regions from SNP 225857 to 226457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,051 DEBUG Processing 173/237 atomic regions from SNP 51747 to 52347 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:59,078 DEBUG Processing 658/1038 atomic regions from SNP 197275 to 197875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,113 DEBUG Processing 567/659 atomic regions from SNP 169867 to 170467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:59,149 DEBUG Processing 793/871 atomic regions from SNP 237873 to 238473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:59,234 DEBUG Processing 602/1146 atomic regions from SNP 180579 to 181179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,258 DEBUG Processing 754/918 atomic regions from SNP 226157 to 226757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,283 DEBUG Processing 174/237 atomic regions from SNP 52047 to 52647 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:59,336 DEBUG Processing 659/1038 atomic regions from SNP 197575 to 198175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,378 DEBUG Processing 568/659 atomic regions from SNP 170167 to 170767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:59,402 DEBUG Processing 794/871 atomic regions from SNP 238173 to 238773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:59,503 DEBUG Processing 755/918 atomic regions from SNP 226457 to 227057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,517 DEBUG Processing 175/237 atomic regions from SNP 52347 to 52947 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:59,523 DEBUG Processing 603/1146 atomic regions from SNP 180879 to 181479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,596 DEBUG Processing 660/1038 atomic regions from SNP 197875 to 198475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,641 DEBUG Processing 569/659 atomic regions from SNP 170467 to 171067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:59,661 DEBUG Processing 795/871 atomic regions from SNP 238473 to 239073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:59,748 DEBUG Processing 756/918 atomic regions from SNP 226757 to 227357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,754 DEBUG Processing 176/237 atomic regions from SNP 52647 to 53247 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:59,803 DEBUG Processing 604/1146 atomic regions from SNP 181179 to 181779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,859 DEBUG Processing 661/1038 atomic regions from SNP 198175 to 198775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,905 DEBUG Processing 570/659 atomic regions from SNP 170767 to 171367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:59,937 DEBUG Processing 796/871 atomic regions from SNP 238773 to 239373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:59,992 DEBUG Processing 757/918 atomic regions from SNP 227057 to 227657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,993 DEBUG Processing 177/237 atomic regions from SNP 52947 to 53547 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:00,084 DEBUG Processing 605/1146 atomic regions from SNP 181479 to 182079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,131 DEBUG Processing 662/1038 atomic regions from SNP 198475 to 199075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,157 DEBUG Processing 571/659 atomic regions from SNP 171067 to 171667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:00,219 DEBUG Processing 797/871 atomic regions from SNP 239073 to 239673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:00,233 DEBUG Processing 178/237 atomic regions from SNP 53247 to 53847 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:00,246 DEBUG Processing 758/918 atomic regions from SNP 227357 to 227957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:00,373 DEBUG Processing 606/1146 atomic regions from SNP 181779 to 182379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,400 DEBUG Processing 663/1038 atomic regions from SNP 198775 to 199375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,408 DEBUG Processing 572/659 atomic regions from SNP 171367 to 171967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:00,478 DEBUG Processing 179/237 atomic regions from SNP 53547 to 54147 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:00,490 DEBUG Processing 798/871 atomic regions from SNP 239373 to 239973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:00,511 DEBUG Processing 759/918 atomic regions from SNP 227657 to 228257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:00,661 DEBUG Processing 573/659 atomic regions from SNP 171667 to 172267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:00,665 DEBUG Processing 607/1146 atomic regions from SNP 182079 to 182679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,672 DEBUG Processing 664/1038 atomic regions from SNP 199075 to 199675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,724 DEBUG Processing 180/237 atomic regions from SNP 53847 to 54447 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:00,762 DEBUG Processing 799/871 atomic regions from SNP 239673 to 240273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:00,767 DEBUG Processing 760/918 atomic regions from SNP 227957 to 228557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:00,924 DEBUG Processing 574/659 atomic regions from SNP 171967 to 172567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:00,944 DEBUG Processing 665/1038 atomic regions from SNP 199375 to 199975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,977 DEBUG Processing 181/237 atomic regions from SNP 54147 to 54747 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:00,979 DEBUG Processing 608/1146 atomic regions from SNP 182379 to 182979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,024 DEBUG Processing 761/918 atomic regions from SNP 228257 to 228857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:01,046 DEBUG Processing 800/871 atomic regions from SNP 239973 to 240573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:01,198 DEBUG Processing 575/659 atomic regions from SNP 172267 to 172867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:01,214 DEBUG Processing 666/1038 atomic regions from SNP 199675 to 200275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,231 DEBUG Processing 182/237 atomic regions from SNP 54447 to 55047 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:01,292 DEBUG Processing 762/918 atomic regions from SNP 228557 to 229157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:01,304 DEBUG Processing 609/1146 atomic regions from SNP 182679 to 183279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,318 DEBUG Processing 801/871 atomic regions from SNP 240273 to 240873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:01,468 DEBUG Processing 576/659 atomic regions from SNP 172567 to 173167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:01,481 DEBUG Processing 183/237 atomic regions from SNP 54747 to 55347 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:01,483 DEBUG Processing 667/1038 atomic regions from SNP 199975 to 200575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,548 DEBUG Processing 763/918 atomic regions from SNP 228857 to 229457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:01,595 DEBUG Processing 802/871 atomic regions from SNP 240573 to 241173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:01,625 DEBUG Processing 610/1146 atomic regions from SNP 182979 to 183579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,739 DEBUG Processing 184/237 atomic regions from SNP 55047 to 55647 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:01,748 DEBUG Processing 577/659 atomic regions from SNP 172867 to 173467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:01,752 DEBUG Processing 668/1038 atomic regions from SNP 200275 to 200875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,808 DEBUG Processing 764/918 atomic regions from SNP 229157 to 229757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:01,872 DEBUG Processing 803/871 atomic regions from SNP 240873 to 241473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:01,919 DEBUG Processing 611/1146 atomic regions from SNP 183279 to 183879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,990 DEBUG Processing 185/237 atomic regions from SNP 55347 to 55947 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:02,018 DEBUG Processing 669/1038 atomic regions from SNP 200575 to 201175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,020 DEBUG Processing 578/659 atomic regions from SNP 173167 to 173767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:02,067 DEBUG Processing 765/918 atomic regions from SNP 229457 to 230057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:02,152 DEBUG Processing 804/871 atomic regions from SNP 241173 to 241773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:02,219 DEBUG Processing 612/1146 atomic regions from SNP 183579 to 184179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,240 DEBUG Processing 186/237 atomic regions from SNP 55647 to 56247 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:02,287 DEBUG Processing 579/659 atomic regions from SNP 173467 to 174067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:02,290 DEBUG Processing 670/1038 atomic regions from SNP 200875 to 201475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,324 DEBUG Processing 766/918 atomic regions from SNP 229757 to 230357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:02,430 DEBUG Processing 805/871 atomic regions from SNP 241473 to 242073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:02,490 DEBUG Processing 187/237 atomic regions from SNP 55947 to 56547 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:02,526 DEBUG Processing 613/1146 atomic regions from SNP 183879 to 184479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,561 DEBUG Processing 580/659 atomic regions from SNP 173767 to 174367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:02,565 DEBUG Processing 671/1038 atomic regions from SNP 201175 to 201775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,578 DEBUG Processing 767/918 atomic regions from SNP 230057 to 230657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:02,700 DEBUG Processing 806/871 atomic regions from SNP 241773 to 242373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:02,743 DEBUG Processing 188/237 atomic regions from SNP 56247 to 56847 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:02,833 DEBUG Processing 768/918 atomic regions from SNP 230357 to 230957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:02,839 DEBUG Processing 581/659 atomic regions from SNP 174067 to 174667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:02,842 DEBUG Processing 672/1038 atomic regions from SNP 201475 to 202075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,843 DEBUG Processing 614/1146 atomic regions from SNP 184179 to 184779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,959 DEBUG Processing 807/871 atomic regions from SNP 242073 to 242673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:02,997 DEBUG Processing 189/237 atomic regions from SNP 56547 to 57147 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:03,088 DEBUG Processing 769/918 atomic regions from SNP 230657 to 231257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:03,115 DEBUG Processing 673/1038 atomic regions from SNP 201775 to 202375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,118 DEBUG Processing 582/659 atomic regions from SNP 174367 to 174967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:03,136 DEBUG Processing 615/1146 atomic regions from SNP 184479 to 185079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,205 DEBUG Processing 808/871 atomic regions from SNP 242373 to 242973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:03,249 DEBUG Processing 190/237 atomic regions from SNP 56847 to 57447 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:03,339 DEBUG Processing 770/918 atomic regions from SNP 230957 to 231557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:03,386 DEBUG Processing 583/659 atomic regions from SNP 174667 to 175267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:03,390 DEBUG Processing 674/1038 atomic regions from SNP 202075 to 202675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,424 DEBUG Processing 616/1146 atomic regions from SNP 184779 to 185379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,455 DEBUG Processing 809/871 atomic regions from SNP 242673 to 243273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:03,496 DEBUG Processing 191/237 atomic regions from SNP 57147 to 57747 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:03,589 DEBUG Processing 771/918 atomic regions from SNP 231257 to 231857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:03,645 DEBUG Processing 584/659 atomic regions from SNP 174967 to 175567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:03,669 DEBUG Processing 675/1038 atomic regions from SNP 202375 to 202975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,717 DEBUG Processing 810/871 atomic regions from SNP 242973 to 243573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:03,718 DEBUG Processing 617/1146 atomic regions from SNP 185079 to 185679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,745 DEBUG Processing 192/237 atomic regions from SNP 57447 to 58047 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:03,834 DEBUG Processing 772/918 atomic regions from SNP 231557 to 232157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:03,897 DEBUG Processing 585/659 atomic regions from SNP 175267 to 175867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:03,949 DEBUG Processing 676/1038 atomic regions from SNP 202675 to 203275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,972 DEBUG Processing 811/871 atomic regions from SNP 243273 to 243873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:04,000 DEBUG Processing 193/237 atomic regions from SNP 57747 to 58347 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:04,019 DEBUG Processing 618/1146 atomic regions from SNP 185379 to 185979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,105 DEBUG Processing 773/918 atomic regions from SNP 231857 to 232457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:04,146 DEBUG Processing 586/659 atomic regions from SNP 175567 to 176167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:04,216 DEBUG Processing 812/871 atomic regions from SNP 243573 to 244173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:04,217 DEBUG Processing 677/1038 atomic regions from SNP 202975 to 203575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,258 DEBUG Processing 194/237 atomic regions from SNP 58047 to 58647 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:04,317 DEBUG Processing 619/1146 atomic regions from SNP 185679 to 186279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,394 DEBUG Processing 774/918 atomic regions from SNP 232157 to 232757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:04,398 DEBUG Processing 587/659 atomic regions from SNP 175867 to 176467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:04,461 DEBUG Processing 813/871 atomic regions from SNP 243873 to 244473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:04,480 DEBUG Processing 678/1038 atomic regions from SNP 203275 to 203875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,515 DEBUG Processing 195/237 atomic regions from SNP 58347 to 58947 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:04,617 DEBUG Processing 620/1146 atomic regions from SNP 185979 to 186579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,640 DEBUG Processing 588/659 atomic regions from SNP 176167 to 176767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:04,671 DEBUG Processing 775/918 atomic regions from SNP 232457 to 233057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:04,713 DEBUG Processing 814/871 atomic regions from SNP 244173 to 244773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:04,752 DEBUG Processing 679/1038 atomic regions from SNP 203575 to 204175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,776 DEBUG Processing 196/237 atomic regions from SNP 58647 to 59247 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:04,882 DEBUG Processing 589/659 atomic regions from SNP 176467 to 177067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:04,909 DEBUG Processing 621/1146 atomic regions from SNP 186279 to 186879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,948 DEBUG Processing 776/918 atomic regions from SNP 232757 to 233357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:04,967 DEBUG Processing 815/871 atomic regions from SNP 244473 to 245073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:05,024 DEBUG Processing 197/237 atomic regions from SNP 58947 to 59547 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:05,025 DEBUG Processing 680/1038 atomic regions from SNP 203875 to 204475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,121 DEBUG Processing 590/659 atomic regions from SNP 176767 to 177367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:05,192 DEBUG Processing 622/1146 atomic regions from SNP 186579 to 187179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,218 DEBUG Processing 777/918 atomic regions from SNP 233057 to 233657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:05,233 DEBUG Processing 816/871 atomic regions from SNP 244773 to 245373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:05,273 DEBUG Processing 198/237 atomic regions from SNP 59247 to 59847 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:05,300 DEBUG Processing 681/1038 atomic regions from SNP 204175 to 204775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,361 DEBUG Processing 591/659 atomic regions from SNP 177067 to 177667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:05,469 DEBUG Processing 778/918 atomic regions from SNP 233357 to 233957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:05,478 DEBUG Processing 623/1146 atomic regions from SNP 186879 to 187479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,511 DEBUG Processing 817/871 atomic regions from SNP 245073 to 245673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:05,524 DEBUG Processing 199/237 atomic regions from SNP 59547 to 60147 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:05,573 DEBUG Processing 682/1038 atomic regions from SNP 204475 to 205075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,599 DEBUG Processing 592/659 atomic regions from SNP 177367 to 177967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:05,721 DEBUG Processing 779/918 atomic regions from SNP 233657 to 234257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:05,777 DEBUG Processing 624/1146 atomic regions from SNP 187179 to 187779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,779 DEBUG Processing 200/237 atomic regions from SNP 59847 to 60447 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:05,783 DEBUG Processing 818/871 atomic regions from SNP 245373 to 245973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:05,843 DEBUG Processing 683/1038 atomic regions from SNP 204775 to 205375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,843 DEBUG Processing 593/659 atomic regions from SNP 177667 to 178267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:05,965 DEBUG Processing 780/918 atomic regions from SNP 233957 to 234557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:06,038 DEBUG Processing 201/237 atomic regions from SNP 60147 to 60747 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:06,065 DEBUG Processing 819/871 atomic regions from SNP 245673 to 246273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:06,082 DEBUG Processing 625/1146 atomic regions from SNP 187479 to 188079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,093 DEBUG Processing 594/659 atomic regions from SNP 177967 to 178567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:06,122 DEBUG Processing 684/1038 atomic regions from SNP 205075 to 205675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,211 DEBUG Processing 781/918 atomic regions from SNP 234257 to 234857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:06,299 DEBUG Processing 202/237 atomic regions from SNP 60447 to 61047 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:06,348 DEBUG Processing 595/659 atomic regions from SNP 178267 to 178867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:06,353 DEBUG Processing 820/871 atomic regions from SNP 245973 to 246573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:06,391 DEBUG Processing 626/1146 atomic regions from SNP 187779 to 188379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,401 DEBUG Processing 685/1038 atomic regions from SNP 205375 to 205975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,465 DEBUG Processing 782/918 atomic regions from SNP 234557 to 235157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:06,554 DEBUG Processing 203/237 atomic regions from SNP 60747 to 61347 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:06,599 DEBUG Processing 596/659 atomic regions from SNP 178567 to 179167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:06,631 DEBUG Processing 821/871 atomic regions from SNP 246273 to 246873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:06,675 DEBUG Processing 686/1038 atomic regions from SNP 205675 to 206275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,691 DEBUG Processing 627/1146 atomic regions from SNP 188079 to 188679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,712 DEBUG Processing 783/918 atomic regions from SNP 234857 to 235457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:06,819 DEBUG Processing 204/237 atomic regions from SNP 61047 to 61647 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:06,847 DEBUG Processing 597/659 atomic regions from SNP 178867 to 179467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:06,913 DEBUG Processing 822/871 atomic regions from SNP 246573 to 247173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:06,955 DEBUG Processing 687/1038 atomic regions from SNP 205975 to 206575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,967 DEBUG Processing 784/918 atomic regions from SNP 235157 to 235757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:06,991 DEBUG Processing 628/1146 atomic regions from SNP 188379 to 188979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,068 DEBUG Processing 205/237 atomic regions from SNP 61347 to 61947 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:07,086 DEBUG Processing 598/659 atomic regions from SNP 179167 to 179767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:07,185 DEBUG Processing 823/871 atomic regions from SNP 246873 to 247473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:07,220 DEBUG Processing 785/918 atomic regions from SNP 235457 to 236057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:07,228 DEBUG Processing 688/1038 atomic regions from SNP 206275 to 206875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,281 DEBUG Processing 629/1146 atomic regions from SNP 188679 to 189279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,331 DEBUG Processing 206/237 atomic regions from SNP 61647 to 62247 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:07,343 DEBUG Processing 599/659 atomic regions from SNP 179467 to 180067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:07,462 DEBUG Processing 824/871 atomic regions from SNP 247173 to 247773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:07,476 DEBUG Processing 786/918 atomic regions from SNP 235757 to 236357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:07,508 DEBUG Processing 689/1038 atomic regions from SNP 206575 to 207175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,570 DEBUG Processing 630/1146 atomic regions from SNP 188979 to 189579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,578 DEBUG Processing 207/237 atomic regions from SNP 61947 to 62547 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:07,602 DEBUG Processing 600/659 atomic regions from SNP 179767 to 180367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:07,732 DEBUG Processing 787/918 atomic regions from SNP 236057 to 236657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:07,740 DEBUG Processing 825/871 atomic regions from SNP 247473 to 248073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:07,786 DEBUG Processing 690/1038 atomic regions from SNP 206875 to 207475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,832 DEBUG Processing 208/237 atomic regions from SNP 62247 to 62847 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:07,864 DEBUG Processing 601/659 atomic regions from SNP 180067 to 180667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:07,866 DEBUG Processing 631/1146 atomic regions from SNP 189279 to 189879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,979 DEBUG Processing 788/918 atomic regions from SNP 236357 to 236957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:08,003 DEBUG Processing 826/871 atomic regions from SNP 247773 to 248373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:08,072 DEBUG Processing 691/1038 atomic regions from SNP 207175 to 207775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,089 DEBUG Processing 209/237 atomic regions from SNP 62547 to 63147 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:08,120 DEBUG Processing 602/659 atomic regions from SNP 180367 to 180967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:08,174 DEBUG Processing 632/1146 atomic regions from SNP 189579 to 190179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,224 DEBUG Processing 789/918 atomic regions from SNP 236657 to 237257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:08,265 DEBUG Processing 827/871 atomic regions from SNP 248073 to 248673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:08,342 DEBUG Processing 210/237 atomic regions from SNP 62847 to 63447 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:08,368 DEBUG Processing 603/659 atomic regions from SNP 180667 to 181267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:08,370 DEBUG Processing 692/1038 atomic regions from SNP 207475 to 208075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,471 DEBUG Processing 790/918 atomic regions from SNP 236957 to 237557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:08,474 DEBUG Processing 633/1146 atomic regions from SNP 189879 to 190479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,531 DEBUG Processing 828/871 atomic regions from SNP 248373 to 248973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:08,584 DEBUG Processing 211/237 atomic regions from SNP 63147 to 63747 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:08,618 DEBUG Processing 604/659 atomic regions from SNP 180967 to 181567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:08,681 DEBUG Processing 693/1038 atomic regions from SNP 207775 to 208375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,723 DEBUG Processing 791/918 atomic regions from SNP 237257 to 237857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:08,766 DEBUG Processing 634/1146 atomic regions from SNP 190179 to 190779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,784 DEBUG Processing 829/871 atomic regions from SNP 248673 to 249273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:08,825 DEBUG Processing 212/237 atomic regions from SNP 63447 to 64047 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:08,867 DEBUG Processing 605/659 atomic regions from SNP 181267 to 181867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:08,978 DEBUG Processing 792/918 atomic regions from SNP 237557 to 238157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:08,985 DEBUG Processing 694/1038 atomic regions from SNP 208075 to 208675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,034 DEBUG Processing 830/871 atomic regions from SNP 248973 to 249573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:09,060 DEBUG Processing 635/1146 atomic regions from SNP 190479 to 191079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,072 DEBUG Processing 213/237 atomic regions from SNP 63747 to 64347 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:09,104 DEBUG Processing 606/659 atomic regions from SNP 181567 to 182167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:09,229 DEBUG Processing 793/918 atomic regions from SNP 237857 to 238457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:09,284 DEBUG Processing 695/1038 atomic regions from SNP 208375 to 208975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,309 DEBUG Processing 831/871 atomic regions from SNP 249273 to 249873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:09,330 DEBUG Processing 214/237 atomic regions from SNP 64047 to 64647 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:09,356 DEBUG Processing 636/1146 atomic regions from SNP 190779 to 191379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,364 DEBUG Processing 607/659 atomic regions from SNP 181867 to 182467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:09,481 DEBUG Processing 794/918 atomic regions from SNP 238157 to 238757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:09,580 DEBUG Processing 215/237 atomic regions from SNP 64347 to 64947 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:09,587 DEBUG Processing 832/871 atomic regions from SNP 249573 to 250173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:09,598 DEBUG Processing 696/1038 atomic regions from SNP 208675 to 209275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,638 DEBUG Processing 608/659 atomic regions from SNP 182167 to 182767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:09,656 DEBUG Processing 637/1146 atomic regions from SNP 191079 to 191679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,736 DEBUG Processing 795/918 atomic regions from SNP 238457 to 239057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:09,846 DEBUG Processing 216/237 atomic regions from SNP 64647 to 65247 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:09,863 DEBUG Processing 833/871 atomic regions from SNP 249873 to 250473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:09,888 DEBUG Processing 697/1038 atomic regions from SNP 208975 to 209575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,918 DEBUG Processing 609/659 atomic regions from SNP 182467 to 183067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:09,959 DEBUG Processing 638/1146 atomic regions from SNP 191379 to 191979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,996 DEBUG Processing 796/918 atomic regions from SNP 238757 to 239357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:10,100 DEBUG Processing 217/237 atomic regions from SNP 64947 to 65547 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:10,130 DEBUG Processing 834/871 atomic regions from SNP 250173 to 250773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:10,183 DEBUG Processing 698/1038 atomic regions from SNP 209275 to 209875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,191 DEBUG Processing 610/659 atomic regions from SNP 182767 to 183367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:10,249 DEBUG Processing 797/918 atomic regions from SNP 239057 to 239657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:10,257 DEBUG Processing 639/1146 atomic regions from SNP 191679 to 192279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,344 DEBUG Processing 218/237 atomic regions from SNP 65247 to 65847 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:10,368 DEBUG Processing 835/871 atomic regions from SNP 250473 to 251073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:10,462 DEBUG Processing 611/659 atomic regions from SNP 183067 to 183667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:10,475 DEBUG Processing 699/1038 atomic regions from SNP 209575 to 210175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,503 DEBUG Processing 798/918 atomic regions from SNP 239357 to 239957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:10,552 DEBUG Processing 640/1146 atomic regions from SNP 191979 to 192579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,597 DEBUG Processing 219/237 atomic regions from SNP 65547 to 66147 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:10,605 DEBUG Processing 836/871 atomic regions from SNP 250773 to 251373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:10,730 DEBUG Processing 612/659 atomic regions from SNP 183367 to 183967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:10,757 DEBUG Processing 799/918 atomic regions from SNP 239657 to 240257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:10,764 DEBUG Processing 700/1038 atomic regions from SNP 209875 to 210475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,848 DEBUG Processing 837/871 atomic regions from SNP 251073 to 251673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:10,852 DEBUG Processing 220/237 atomic regions from SNP 65847 to 66447 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:10,855 DEBUG Processing 641/1146 atomic regions from SNP 192279 to 192879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,002 DEBUG Processing 613/659 atomic regions from SNP 183667 to 184267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:11,005 DEBUG Processing 800/918 atomic regions from SNP 239957 to 240557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:11,057 DEBUG Processing 701/1038 atomic regions from SNP 210175 to 210775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,102 DEBUG Processing 838/871 atomic regions from SNP 251373 to 251973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:11,114 DEBUG Processing 221/237 atomic regions from SNP 66147 to 66747 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:11,158 DEBUG Processing 642/1146 atomic regions from SNP 192579 to 193179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,243 DEBUG Processing 801/918 atomic regions from SNP 240257 to 240857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:11,263 DEBUG Processing 614/659 atomic regions from SNP 183967 to 184567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:11,349 DEBUG Processing 702/1038 atomic regions from SNP 210475 to 211075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,362 DEBUG Processing 839/871 atomic regions from SNP 251673 to 252273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:11,367 DEBUG Processing 222/237 atomic regions from SNP 66447 to 67047 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:11,455 DEBUG Processing 643/1146 atomic regions from SNP 192879 to 193479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,487 DEBUG Processing 802/918 atomic regions from SNP 240557 to 241157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:11,532 DEBUG Processing 615/659 atomic regions from SNP 184267 to 184867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:11,604 DEBUG Processing 840/871 atomic regions from SNP 251973 to 252573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:11,604 DEBUG Processing 223/237 atomic regions from SNP 66747 to 67347 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:11,626 DEBUG Processing 703/1038 atomic regions from SNP 210775 to 211375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,737 DEBUG Processing 803/918 atomic regions from SNP 240857 to 241457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:11,745 DEBUG Processing 644/1146 atomic regions from SNP 193179 to 193779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,789 DEBUG Processing 616/659 atomic regions from SNP 184567 to 185167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:11,840 DEBUG Processing 224/237 atomic regions from SNP 67047 to 67647 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:11,850 DEBUG Processing 841/871 atomic regions from SNP 252273 to 252873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:11,903 DEBUG Processing 704/1038 atomic regions from SNP 211075 to 211675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,988 DEBUG Processing 804/918 atomic regions from SNP 241157 to 241757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:12,041 DEBUG Processing 645/1146 atomic regions from SNP 193479 to 194079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,056 DEBUG Processing 617/659 atomic regions from SNP 184867 to 185467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:12,085 DEBUG Processing 225/237 atomic regions from SNP 67347 to 67947 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:12,114 DEBUG Processing 842/871 atomic regions from SNP 252573 to 253173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:12,188 DEBUG Processing 705/1038 atomic regions from SNP 211375 to 211975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,242 DEBUG Processing 805/918 atomic regions from SNP 241457 to 242057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:12,326 DEBUG Processing 618/659 atomic regions from SNP 185167 to 185767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:12,333 DEBUG Processing 646/1146 atomic regions from SNP 193779 to 194379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,338 DEBUG Processing 226/237 atomic regions from SNP 67647 to 68247 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:12,391 DEBUG Processing 843/871 atomic regions from SNP 252873 to 253473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:12,461 DEBUG Processing 706/1038 atomic regions from SNP 211675 to 212275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,492 DEBUG Processing 806/918 atomic regions from SNP 241757 to 242357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:12,593 DEBUG Processing 227/237 atomic regions from SNP 67947 to 68547 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:12,607 DEBUG Processing 619/659 atomic regions from SNP 185467 to 186067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:12,632 DEBUG Processing 647/1146 atomic regions from SNP 194079 to 194679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,661 DEBUG Processing 844/871 atomic regions from SNP 253173 to 253773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:12,741 DEBUG Processing 807/918 atomic regions from SNP 242057 to 242657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:12,743 DEBUG Processing 707/1038 atomic regions from SNP 211975 to 212575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,846 DEBUG Processing 228/237 atomic regions from SNP 68247 to 68847 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:12,887 DEBUG Processing 620/659 atomic regions from SNP 185767 to 186367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:12,922 DEBUG Processing 845/871 atomic regions from SNP 253473 to 254073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:12,933 DEBUG Processing 648/1146 atomic regions from SNP 194379 to 194979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,994 DEBUG Processing 808/918 atomic regions from SNP 242357 to 242957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:13,027 DEBUG Processing 708/1038 atomic regions from SNP 212275 to 212875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,094 DEBUG Processing 229/237 atomic regions from SNP 68547 to 69147 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:13,162 DEBUG Processing 621/659 atomic regions from SNP 186067 to 186667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:13,175 DEBUG Processing 846/871 atomic regions from SNP 253773 to 254373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:13,232 DEBUG Processing 649/1146 atomic regions from SNP 194679 to 195279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,249 DEBUG Processing 809/918 atomic regions from SNP 242657 to 243257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:13,319 DEBUG Processing 709/1038 atomic regions from SNP 212575 to 213175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,343 DEBUG Processing 230/237 atomic regions from SNP 68847 to 69447 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:13,412 DEBUG Processing 847/871 atomic regions from SNP 254073 to 254673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:13,428 DEBUG Processing 622/659 atomic regions from SNP 186367 to 186967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:13,501 DEBUG Processing 810/918 atomic regions from SNP 242957 to 243557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:13,529 DEBUG Processing 650/1146 atomic regions from SNP 194979 to 195579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,596 DEBUG Processing 231/237 atomic regions from SNP 69147 to 69747 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:13,612 DEBUG Processing 710/1038 atomic regions from SNP 212875 to 213475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,646 DEBUG Processing 848/871 atomic regions from SNP 254373 to 254973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:13,687 DEBUG Processing 623/659 atomic regions from SNP 186667 to 187267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:13,752 DEBUG Processing 811/918 atomic regions from SNP 243257 to 243857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:13,837 DEBUG Processing 651/1146 atomic regions from SNP 195279 to 195879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,852 DEBUG Processing 232/237 atomic regions from SNP 69447 to 70047 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:13,886 DEBUG Processing 711/1038 atomic regions from SNP 213175 to 213775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,905 DEBUG Processing 849/871 atomic regions from SNP 254673 to 255273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:13,950 DEBUG Processing 624/659 atomic regions from SNP 186967 to 187567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:13,999 DEBUG Processing 812/918 atomic regions from SNP 243557 to 244157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:14,106 DEBUG Processing 233/237 atomic regions from SNP 69747 to 70347 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:14,133 DEBUG Processing 652/1146 atomic regions from SNP 195579 to 196179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,153 DEBUG Processing 850/871 atomic regions from SNP 254973 to 255573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:14,155 DEBUG Processing 712/1038 atomic regions from SNP 213475 to 214075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,220 DEBUG Processing 625/659 atomic regions from SNP 187267 to 187867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:14,246 DEBUG Processing 813/918 atomic regions from SNP 243857 to 244457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:14,358 DEBUG Processing 234/237 atomic regions from SNP 70047 to 70647 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:14,405 DEBUG Processing 851/871 atomic regions from SNP 255273 to 255873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:14,433 DEBUG Processing 653/1146 atomic regions from SNP 195879 to 196479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,435 DEBUG Processing 713/1038 atomic regions from SNP 213775 to 214375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,484 DEBUG Processing 626/659 atomic regions from SNP 187567 to 188167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:14,502 DEBUG Processing 814/918 atomic regions from SNP 244157 to 244757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:14,607 DEBUG Processing 235/237 atomic regions from SNP 70347 to 70947 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:14,662 DEBUG Processing 852/871 atomic regions from SNP 255573 to 256173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:14,716 DEBUG Processing 714/1038 atomic regions from SNP 214075 to 214675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,723 DEBUG Processing 654/1146 atomic regions from SNP 196179 to 196779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,751 DEBUG Processing 627/659 atomic regions from SNP 187867 to 188467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:14,752 DEBUG Processing 815/918 atomic regions from SNP 244457 to 245057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:14,850 DEBUG Processing 236/237 atomic regions from SNP 70647 to 71247 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:14,921 DEBUG Processing 853/871 atomic regions from SNP 255873 to 256473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:15,004 DEBUG Processing 816/918 atomic regions from SNP 244757 to 245357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:15,015 DEBUG Processing 628/659 atomic regions from SNP 188167 to 188767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:15,015 DEBUG Processing 715/1038 atomic regions from SNP 214375 to 214975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,019 DEBUG Processing 655/1146 atomic regions from SNP 196479 to 197079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,096 DEBUG Processing 237/237 atomic regions from SNP 70947 to 71547 for chrX (subchromosome 4 of 4). 2025-01-31 09:48:15,173 DEBUG Processing 854/871 atomic regions from SNP 256173 to 256773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:15,248 DEBUG Unique SNPs positions in subchromosome 4: 71548 2025-01-31 09:48:15,255 DEBUG Processing 817/918 atomic regions from SNP 245057 to 245657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:15,268 DEBUG Processing 629/659 atomic regions from SNP 188467 to 189067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:15,305 DEBUG Processing 716/1038 atomic regions from SNP 214675 to 215275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,316 DEBUG Processing 656/1146 atomic regions from SNP 196779 to 197379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,389 DEBUG Subchromosome time: 69.31727066100575, subchromosome SNPs: 71548 2025-01-31 09:48:15,390 DEBUG Estimated BADs: [2.76, 5.52, 2.76, 0.00, 5.52, 2.76, 8.27, 2.76, 5.52, 2.76, 0.92, 0.92, 2.76, 1.38, 2.76, 1.38, 2.76] SNP counts: [3721, 14179, 15281, 60, 6102, 55112, 1844, 40759, 8136, 16162, 16408, 13037, 14750, 9552, 3396, 11798, 19015] SNP IDs counts: [3721, 14179, 15281, 60, 6102, 55112, 1844, 40759, 8136, 16162, 16408, 13037, 14750, 9552, 3396, 11798, 19015] Critical gap: 752140bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.43Mbp, 15.64Mbp, 26.92Mbp[1.11Mbp], 29.68Mbp[1.45Mbp], 39.24Mbp, 73.05Mbp, 74.20Mbp, 99.03Mbp, 103.59Mbp, 113.34Mbp, 124.25Mbp[1.76Mbp], 133.85Mbp, 142.59Mbp, 150.36Mbp, 152.29Mbp, 159.37Mbp, 171.03Mbp] 2025-01-31 09:48:15,390 DEBUG chrX time: 69.31782212795224 s 2025-01-31 09:48:15,431 DEBUG Processing 855/871 atomic regions from SNP 256473 to 257073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:15,507 DEBUG Processing 818/918 atomic regions from SNP 245357 to 245957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:15,515 DEBUG Processing 630/659 atomic regions from SNP 188767 to 189367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:15,570 DEBUG chrX: Fitting background model for 16 segments 2025-01-31 09:48:15,578 DEBUG Processing 717/1038 atomic regions from SNP 214975 to 215575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,615 DEBUG Processing 657/1146 atomic regions from SNP 197079 to 197679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,699 DEBUG Processing 856/871 atomic regions from SNP 256773 to 257373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:15,752 DEBUG Processing 819/918 atomic regions from SNP 245657 to 246257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:15,755 DEBUG Processing 631/659 atomic regions from SNP 189067 to 189667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:15,843 DEBUG Processing 718/1038 atomic regions from SNP 215275 to 215875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,922 DEBUG Processing 658/1146 atomic regions from SNP 197379 to 197979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,973 DEBUG Processing 857/871 atomic regions from SNP 257073 to 257673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:15,991 DEBUG Processing 820/918 atomic regions from SNP 245957 to 246557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:16,001 DEBUG Processing 632/659 atomic regions from SNP 189367 to 189967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:16,111 DEBUG Processing 719/1038 atomic regions from SNP 215575 to 216175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,211 DEBUG Processing 659/1146 atomic regions from SNP 197679 to 198279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,231 DEBUG Processing 858/871 atomic regions from SNP 257373 to 257973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:16,237 DEBUG Processing 821/918 atomic regions from SNP 246257 to 246857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:16,269 DEBUG Processing 633/659 atomic regions from SNP 189667 to 190267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:16,375 DEBUG Processing 720/1038 atomic regions from SNP 215875 to 216475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,482 DEBUG Processing 859/871 atomic regions from SNP 257673 to 258273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:16,487 DEBUG Processing 822/918 atomic regions from SNP 246557 to 247157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:16,492 DEBUG Processing 660/1146 atomic regions from SNP 197979 to 198579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,547 DEBUG Processing 634/659 atomic regions from SNP 189967 to 190567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:16,640 DEBUG Processing 721/1038 atomic regions from SNP 216175 to 216775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,732 DEBUG Processing 823/918 atomic regions from SNP 246857 to 247457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:16,747 DEBUG Processing 860/871 atomic regions from SNP 257973 to 258573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:16,775 DEBUG Processing 661/1146 atomic regions from SNP 198279 to 198879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,819 DEBUG Processing 635/659 atomic regions from SNP 190267 to 190867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:16,906 DEBUG Processing 722/1038 atomic regions from SNP 216475 to 217075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,972 DEBUG Processing 824/918 atomic regions from SNP 247157 to 247757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:17,000 DEBUG Processing 861/871 atomic regions from SNP 258273 to 258873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:17,063 DEBUG Processing 662/1146 atomic regions from SNP 198579 to 199179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,090 DEBUG Processing 636/659 atomic regions from SNP 190567 to 191167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:17,165 DEBUG Processing 723/1038 atomic regions from SNP 216775 to 217375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,213 DEBUG Processing 825/918 atomic regions from SNP 247457 to 248057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:17,241 DEBUG Processing 862/871 atomic regions from SNP 258573 to 259173 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:17,350 DEBUG Processing 637/659 atomic regions from SNP 190867 to 191467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:17,362 DEBUG Processing 663/1146 atomic regions from SNP 198879 to 199479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,429 DEBUG Processing 724/1038 atomic regions from SNP 217075 to 217675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,460 DEBUG Processing 826/918 atomic regions from SNP 247757 to 248357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:17,487 DEBUG Processing 863/871 atomic regions from SNP 258873 to 259473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:17,601 DEBUG Processing 638/659 atomic regions from SNP 191167 to 191767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:17,663 DEBUG Processing 664/1146 atomic regions from SNP 199179 to 199779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,704 DEBUG Processing 725/1038 atomic regions from SNP 217375 to 217975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,713 DEBUG Processing 827/918 atomic regions from SNP 248057 to 248657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:17,740 DEBUG Processing 864/871 atomic regions from SNP 259173 to 259773 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:17,852 DEBUG Processing 639/659 atomic regions from SNP 191467 to 192067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:17,967 DEBUG Processing 665/1146 atomic regions from SNP 199479 to 200079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,974 DEBUG Processing 828/918 atomic regions from SNP 248357 to 248957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:17,983 DEBUG Processing 726/1038 atomic regions from SNP 217675 to 218275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,003 DEBUG Processing 865/871 atomic regions from SNP 259473 to 260073 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:18,097 DEBUG Processing 640/659 atomic regions from SNP 191767 to 192367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:18,236 DEBUG Processing 829/918 atomic regions from SNP 248657 to 249257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:18,265 DEBUG Processing 666/1146 atomic regions from SNP 199779 to 200379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,265 DEBUG Processing 727/1038 atomic regions from SNP 217975 to 218575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,271 DEBUG Processing 866/871 atomic regions from SNP 259773 to 260373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:18,344 DEBUG Processing 641/659 atomic regions from SNP 192067 to 192667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:18,497 DEBUG Processing 830/918 atomic regions from SNP 248957 to 249557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:18,530 DEBUG Processing 867/871 atomic regions from SNP 260073 to 260673 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:18,546 DEBUG Processing 667/1146 atomic regions from SNP 200079 to 200679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,550 DEBUG Processing 728/1038 atomic regions from SNP 218275 to 218875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,602 DEBUG Processing 642/659 atomic regions from SNP 192367 to 192967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:18,751 DEBUG Processing 831/918 atomic regions from SNP 249257 to 249857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:18,788 DEBUG Processing 868/871 atomic regions from SNP 260373 to 260973 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:18,829 DEBUG Processing 668/1146 atomic regions from SNP 200379 to 200979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,834 DEBUG Processing 729/1038 atomic regions from SNP 218575 to 219175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,868 DEBUG Processing 643/659 atomic regions from SNP 192667 to 193267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:19,004 DEBUG Processing 832/918 atomic regions from SNP 249557 to 250157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:19,048 DEBUG Processing 869/871 atomic regions from SNP 260673 to 261273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:19,115 DEBUG Processing 669/1146 atomic regions from SNP 200679 to 201279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,116 DEBUG Processing 730/1038 atomic regions from SNP 218875 to 219475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,129 DEBUG Processing 644/659 atomic regions from SNP 192967 to 193567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:19,256 DEBUG Processing 833/918 atomic regions from SNP 249857 to 250457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:19,312 DEBUG Processing 870/871 atomic regions from SNP 260973 to 261573 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:19,383 DEBUG Processing 645/659 atomic regions from SNP 193267 to 193867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:19,392 DEBUG Processing 731/1038 atomic regions from SNP 219175 to 219775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,398 DEBUG Processing 670/1146 atomic regions from SNP 200979 to 201579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,508 DEBUG Processing 834/918 atomic regions from SNP 250157 to 250757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:19,587 DEBUG Processing 871/871 atomic regions from SNP 261273 to 261873 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:19,661 DEBUG Processing 646/659 atomic regions from SNP 193567 to 194167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:19,668 DEBUG Processing 732/1038 atomic regions from SNP 219475 to 220075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,681 DEBUG Processing 671/1146 atomic regions from SNP 201279 to 201879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,725 DEBUG Unique SNPs positions in subchromosome 1: 261874 2025-01-31 09:48:19,763 DEBUG Processing 835/918 atomic regions from SNP 250457 to 251057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:19,945 DEBUG Processing 647/659 atomic regions from SNP 193867 to 194467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:19,951 DEBUG Processing 733/1038 atomic regions from SNP 219775 to 220375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,964 DEBUG Processing 672/1146 atomic regions from SNP 201579 to 202179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,016 DEBUG Processing 836/918 atomic regions from SNP 250757 to 251357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:20,219 DEBUG Processing 648/659 atomic regions from SNP 194167 to 194767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:20,226 DEBUG Processing 734/1038 atomic regions from SNP 220075 to 220675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,250 DEBUG Processing 673/1146 atomic regions from SNP 201879 to 202479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,271 DEBUG Processing 837/918 atomic regions from SNP 251057 to 251657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:20,496 DEBUG Processing 649/659 atomic regions from SNP 194467 to 195067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:20,515 DEBUG Processing 735/1038 atomic regions from SNP 220375 to 220975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,533 DEBUG Processing 674/1146 atomic regions from SNP 202179 to 202779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,535 DEBUG Processing 838/918 atomic regions from SNP 251357 to 251957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:20,771 DEBUG Processing 650/659 atomic regions from SNP 194767 to 195367 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:20,798 DEBUG Processing 839/918 atomic regions from SNP 251657 to 252257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:20,809 DEBUG Processing 736/1038 atomic regions from SNP 220675 to 221275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,815 DEBUG Processing 675/1146 atomic regions from SNP 202479 to 203079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,045 DEBUG Processing 651/659 atomic regions from SNP 195067 to 195667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:21,063 DEBUG Processing 840/918 atomic regions from SNP 251957 to 252557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:21,096 DEBUG Processing 737/1038 atomic regions from SNP 220975 to 221575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,105 DEBUG Processing 676/1146 atomic regions from SNP 202779 to 203379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,322 DEBUG Processing 841/918 atomic regions from SNP 252257 to 252857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:21,330 DEBUG Processing 652/659 atomic regions from SNP 195367 to 195967 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:21,376 DEBUG Processing 738/1038 atomic regions from SNP 221275 to 221875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,390 DEBUG Processing 677/1146 atomic regions from SNP 203079 to 203679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,583 DEBUG Processing 842/918 atomic regions from SNP 252557 to 253157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:21,618 DEBUG Processing 653/659 atomic regions from SNP 195667 to 196267 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:21,650 DEBUG Processing 739/1038 atomic regions from SNP 221575 to 222175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,679 DEBUG Processing 678/1146 atomic regions from SNP 203379 to 203979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,836 DEBUG Processing 843/918 atomic regions from SNP 252857 to 253457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:21,889 DEBUG Processing 654/659 atomic regions from SNP 195967 to 196567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:21,915 DEBUG Processing 740/1038 atomic regions from SNP 221875 to 222475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,991 DEBUG Processing 679/1146 atomic regions from SNP 203679 to 204279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,088 DEBUG Processing 844/918 atomic regions from SNP 253157 to 253757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:22,161 DEBUG Processing 655/659 atomic regions from SNP 196267 to 196867 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:22,200 DEBUG Processing 741/1038 atomic regions from SNP 222175 to 222775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,312 DEBUG Processing 680/1146 atomic regions from SNP 203979 to 204579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,342 DEBUG Processing 845/918 atomic regions from SNP 253457 to 254057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:22,437 DEBUG Processing 656/659 atomic regions from SNP 196567 to 197167 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:22,477 DEBUG Processing 742/1038 atomic regions from SNP 222475 to 223075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,592 DEBUG Processing 846/918 atomic regions from SNP 253757 to 254357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:22,612 DEBUG Processing 681/1146 atomic regions from SNP 204279 to 204879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,716 DEBUG Processing 657/659 atomic regions from SNP 196867 to 197467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:22,757 DEBUG Processing 743/1038 atomic regions from SNP 222775 to 223375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,843 DEBUG Processing 847/918 atomic regions from SNP 254057 to 254657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:22,926 DEBUG Processing 682/1146 atomic regions from SNP 204579 to 205179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,003 DEBUG Processing 658/659 atomic regions from SNP 197167 to 197767 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:23,049 DEBUG Processing 744/1038 atomic regions from SNP 223075 to 223675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,096 DEBUG Processing 848/918 atomic regions from SNP 254357 to 254957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:23,240 DEBUG Processing 683/1146 atomic regions from SNP 204879 to 205479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,281 DEBUG Processing 659/659 atomic regions from SNP 197467 to 198067 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:23,351 DEBUG Processing 745/1038 atomic regions from SNP 223375 to 223975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,357 DEBUG Processing 849/918 atomic regions from SNP 254657 to 255257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:23,443 DEBUG Unique SNPs positions in subchromosome 2: 198068 2025-01-31 09:48:23,557 DEBUG Processing 684/1146 atomic regions from SNP 205179 to 205779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,619 DEBUG Processing 850/918 atomic regions from SNP 254957 to 255557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:23,665 DEBUG Processing 746/1038 atomic regions from SNP 223675 to 224275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,873 DEBUG Processing 685/1146 atomic regions from SNP 205479 to 206079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,877 DEBUG Processing 851/918 atomic regions from SNP 255257 to 255857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:23,978 DEBUG Processing 747/1038 atomic regions from SNP 223975 to 224575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,133 DEBUG Processing 852/918 atomic regions from SNP 255557 to 256157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:24,193 DEBUG Processing 686/1146 atomic regions from SNP 205779 to 206379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,269 DEBUG Processing 748/1038 atomic regions from SNP 224275 to 224875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,382 DEBUG Processing 853/918 atomic regions from SNP 255857 to 256457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:24,516 DEBUG Processing 687/1146 atomic regions from SNP 206079 to 206679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,542 DEBUG Processing 749/1038 atomic regions from SNP 224575 to 225175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,636 DEBUG Processing 854/918 atomic regions from SNP 256157 to 256757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:24,806 DEBUG Processing 688/1146 atomic regions from SNP 206379 to 206979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,827 DEBUG Processing 750/1038 atomic regions from SNP 224875 to 225475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,896 DEBUG Processing 855/918 atomic regions from SNP 256457 to 257057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:25,125 DEBUG Processing 689/1146 atomic regions from SNP 206679 to 207279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,126 DEBUG Processing 751/1038 atomic regions from SNP 225175 to 225775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,159 DEBUG Processing 856/918 atomic regions from SNP 256757 to 257357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:25,420 DEBUG Processing 857/918 atomic regions from SNP 257057 to 257657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:25,422 DEBUG Processing 752/1038 atomic regions from SNP 225475 to 226075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,451 DEBUG Processing 690/1146 atomic regions from SNP 206979 to 207579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,681 DEBUG Processing 858/918 atomic regions from SNP 257357 to 257957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:25,717 DEBUG Processing 753/1038 atomic regions from SNP 225775 to 226375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,781 DEBUG Processing 691/1146 atomic regions from SNP 207279 to 207879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,933 DEBUG Processing 859/918 atomic regions from SNP 257657 to 258257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:25,992 DEBUG Processing 754/1038 atomic regions from SNP 226075 to 226675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,091 DEBUG Processing 692/1146 atomic regions from SNP 207579 to 208179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,187 DEBUG Processing 860/918 atomic regions from SNP 257957 to 258557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:26,280 DEBUG Processing 755/1038 atomic regions from SNP 226375 to 226975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,400 DEBUG Processing 693/1146 atomic regions from SNP 207879 to 208479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,443 DEBUG Processing 861/918 atomic regions from SNP 258257 to 258857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:26,570 DEBUG Processing 756/1038 atomic regions from SNP 226675 to 227275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,697 DEBUG Processing 862/918 atomic regions from SNP 258557 to 259157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:26,706 DEBUG Processing 694/1146 atomic regions from SNP 208179 to 208779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,867 DEBUG Processing 757/1038 atomic regions from SNP 226975 to 227575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,938 DEBUG Processing 863/918 atomic regions from SNP 258857 to 259457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:27,002 DEBUG Processing 695/1146 atomic regions from SNP 208479 to 209079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,163 DEBUG Processing 758/1038 atomic regions from SNP 227275 to 227875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,187 DEBUG Processing 864/918 atomic regions from SNP 259157 to 259757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:27,300 DEBUG Processing 696/1146 atomic regions from SNP 208779 to 209379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,449 DEBUG Processing 865/918 atomic regions from SNP 259457 to 260057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:27,452 DEBUG Processing 759/1038 atomic regions from SNP 227575 to 228175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,594 DEBUG Processing 697/1146 atomic regions from SNP 209079 to 209679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,708 DEBUG Processing 866/918 atomic regions from SNP 259757 to 260357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:27,741 DEBUG Processing 760/1038 atomic regions from SNP 227875 to 228475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,891 DEBUG Processing 698/1146 atomic regions from SNP 209379 to 209979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,969 DEBUG Processing 867/918 atomic regions from SNP 260057 to 260657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:28,030 DEBUG Processing 761/1038 atomic regions from SNP 228175 to 228775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,209 DEBUG Processing 699/1146 atomic regions from SNP 209679 to 210279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,238 DEBUG Processing 868/918 atomic regions from SNP 260357 to 260957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:28,318 DEBUG Processing 762/1038 atomic regions from SNP 228475 to 229075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,506 DEBUG Processing 869/918 atomic regions from SNP 260657 to 261257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:28,514 DEBUG Processing 700/1146 atomic regions from SNP 209979 to 210579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,603 DEBUG Processing 763/1038 atomic regions from SNP 228775 to 229375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,764 DEBUG Processing 870/918 atomic regions from SNP 260957 to 261557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:28,814 DEBUG Processing 701/1146 atomic regions from SNP 210279 to 210879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,905 DEBUG Processing 764/1038 atomic regions from SNP 229075 to 229675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,024 DEBUG Processing 871/918 atomic regions from SNP 261257 to 261857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:29,117 DEBUG Processing 702/1146 atomic regions from SNP 210579 to 211179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,212 DEBUG Processing 765/1038 atomic regions from SNP 229375 to 229975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,288 DEBUG Processing 872/918 atomic regions from SNP 261557 to 262157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:29,409 DEBUG Processing 703/1146 atomic regions from SNP 210879 to 211479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,523 DEBUG Processing 766/1038 atomic regions from SNP 229675 to 230275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,548 DEBUG Processing 873/918 atomic regions from SNP 261857 to 262457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:29,708 DEBUG Processing 704/1146 atomic regions from SNP 211179 to 211779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,811 DEBUG Processing 874/918 atomic regions from SNP 262157 to 262757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:29,831 DEBUG Processing 767/1038 atomic regions from SNP 229975 to 230575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,016 DEBUG Processing 705/1146 atomic regions from SNP 211479 to 212079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,082 DEBUG Processing 875/918 atomic regions from SNP 262457 to 263057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:30,122 DEBUG Processing 768/1038 atomic regions from SNP 230275 to 230875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,318 DEBUG Processing 706/1146 atomic regions from SNP 211779 to 212379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,345 DEBUG Processing 876/918 atomic regions from SNP 262757 to 263357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:30,434 DEBUG Processing 769/1038 atomic regions from SNP 230575 to 231175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,601 DEBUG Processing 877/918 atomic regions from SNP 263057 to 263657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:30,605 DEBUG Processing 707/1146 atomic regions from SNP 212079 to 212679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,751 DEBUG Processing 770/1038 atomic regions from SNP 230875 to 231475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,855 DEBUG Processing 878/918 atomic regions from SNP 263357 to 263957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:30,890 DEBUG Processing 708/1146 atomic regions from SNP 212379 to 212979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,045 DEBUG Processing 771/1038 atomic regions from SNP 231175 to 231775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,110 DEBUG Processing 879/918 atomic regions from SNP 263657 to 264257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:31,179 DEBUG Processing 709/1146 atomic regions from SNP 212679 to 213279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,277 DEBUG Subchromosome time: 199.5642378279008, subchromosome SNPs: 198068 2025-01-31 09:48:31,277 DEBUG Estimated BADs: [3.35, 0.84, 1.67, 3.35, 1.12, 6.70, 6.70, 1.67, 3.35, 1.12, 3.35, 1.12, 1.67, 3.35, 6.70, 1.67, 0.48, 3.35, 6.70, 3.35, 6.70] SNP counts: [22676, 4503, 23188, 4807, 8776, 3163, 11235, 5147, 20378, 27006, 16765, 5428, 6891, 18011, 6912, 2689, 2977, 3120, 47685, 7957, 15867] SNP IDs counts: [22676, 4503, 23188, 4807, 8776, 3163, 11235, 5147, 20378, 27006, 16765, 5428, 6891, 18011, 6912, 2689, 2977, 3120, 47685, 7957, 15867] Critical gap: 680107bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 16.25Mbp, 18.95Mbp, 32.36Mbp, 34.96Mbp, 40.08Mbp, 41.86Mbp[0.87Mbp], 48.74Mbp, 51.75Mbp, 64.63Mbp, 80.36Mbp, 89.81Mbp, 92.99Mbp, 96.89Mbp, 106.69Mbp, 110.40Mbp, 111.97Mbp, 113.86Mbp, 115.73Mbp, 141.73Mbp, 148.03Mbp, 156.51Mbp] 2025-01-31 09:48:31,277 DEBUG chr4 time: 199.56490707490593 s 2025-01-31 09:48:31,338 DEBUG Processing 772/1038 atomic regions from SNP 231475 to 232075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,368 DEBUG Processing 880/918 atomic regions from SNP 263957 to 264557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:31,429 DEBUG chr4: Fitting background model for 21 segments 2025-01-31 09:48:31,462 DEBUG Processing 710/1146 atomic regions from SNP 212979 to 213579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,624 DEBUG Processing 773/1038 atomic regions from SNP 231775 to 232375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,632 DEBUG Processing 881/918 atomic regions from SNP 264257 to 264857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:31,754 DEBUG Processing 711/1146 atomic regions from SNP 213279 to 213879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,903 DEBUG Processing 882/918 atomic regions from SNP 264557 to 265157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:31,929 DEBUG Processing 774/1038 atomic regions from SNP 232075 to 232675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,054 DEBUG Processing 712/1146 atomic regions from SNP 213579 to 214179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,169 DEBUG Processing 883/918 atomic regions from SNP 264857 to 265457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:32,232 DEBUG Processing 775/1038 atomic regions from SNP 232375 to 232975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,348 DEBUG Processing 713/1146 atomic regions from SNP 213879 to 214479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,432 DEBUG Processing 884/918 atomic regions from SNP 265157 to 265757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:32,532 DEBUG Processing 776/1038 atomic regions from SNP 232675 to 233275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,634 DEBUG Processing 714/1146 atomic regions from SNP 214179 to 214779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,695 DEBUG Processing 885/918 atomic regions from SNP 265457 to 266057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:32,834 DEBUG Processing 777/1038 atomic regions from SNP 232975 to 233575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,920 DEBUG Processing 715/1146 atomic regions from SNP 214479 to 215079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,958 DEBUG Processing 886/918 atomic regions from SNP 265757 to 266357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:33,119 DEBUG Processing 778/1038 atomic regions from SNP 233275 to 233875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,216 DEBUG Processing 716/1146 atomic regions from SNP 214779 to 215379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,227 DEBUG Processing 887/918 atomic regions from SNP 266057 to 266657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:33,407 DEBUG Processing 779/1038 atomic regions from SNP 233575 to 234175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,499 DEBUG Processing 888/918 atomic regions from SNP 266357 to 266957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:33,517 DEBUG Processing 717/1146 atomic regions from SNP 215079 to 215679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,691 DEBUG Processing 780/1038 atomic regions from SNP 233875 to 234475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,771 DEBUG Processing 889/918 atomic regions from SNP 266657 to 267257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:33,813 DEBUG Processing 718/1146 atomic regions from SNP 215379 to 215979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,982 DEBUG Processing 781/1038 atomic regions from SNP 234175 to 234775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,043 DEBUG Processing 890/918 atomic regions from SNP 266957 to 267557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:34,103 DEBUG Processing 719/1146 atomic regions from SNP 215679 to 216279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,267 DEBUG Processing 782/1038 atomic regions from SNP 234475 to 235075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,308 DEBUG Processing 891/918 atomic regions from SNP 267257 to 267857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:34,392 DEBUG Processing 720/1146 atomic regions from SNP 215979 to 216579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,551 DEBUG Processing 783/1038 atomic regions from SNP 234775 to 235375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,572 DEBUG Processing 892/918 atomic regions from SNP 267557 to 268157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:34,674 DEBUG Processing 721/1146 atomic regions from SNP 216279 to 216879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,829 DEBUG Processing 784/1038 atomic regions from SNP 235075 to 235675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,833 DEBUG Processing 893/918 atomic regions from SNP 267857 to 268457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:34,970 DEBUG Processing 722/1146 atomic regions from SNP 216579 to 217179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,090 DEBUG Processing 894/918 atomic regions from SNP 268157 to 268757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:35,103 DEBUG Processing 785/1038 atomic regions from SNP 235375 to 235975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,277 DEBUG Processing 723/1146 atomic regions from SNP 216879 to 217479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,356 DEBUG Processing 895/918 atomic regions from SNP 268457 to 269057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:35,388 DEBUG Processing 786/1038 atomic regions from SNP 235675 to 236275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,590 DEBUG Processing 724/1146 atomic regions from SNP 217179 to 217779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,625 DEBUG Processing 896/918 atomic regions from SNP 268757 to 269357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:35,674 DEBUG Processing 787/1038 atomic regions from SNP 235975 to 236575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,885 DEBUG Processing 725/1146 atomic regions from SNP 217479 to 218079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,890 DEBUG Processing 897/918 atomic regions from SNP 269057 to 269657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:35,956 DEBUG Processing 788/1038 atomic regions from SNP 236275 to 236875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,156 DEBUG Processing 898/918 atomic regions from SNP 269357 to 269957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:36,178 DEBUG Processing 726/1146 atomic regions from SNP 217779 to 218379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,237 DEBUG Processing 789/1038 atomic regions from SNP 236575 to 237175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,425 DEBUG Processing 899/918 atomic regions from SNP 269657 to 270257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:36,483 DEBUG Processing 727/1146 atomic regions from SNP 218079 to 218679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,517 DEBUG Processing 790/1038 atomic regions from SNP 236875 to 237475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,688 DEBUG Processing 900/918 atomic regions from SNP 269957 to 270557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:36,772 DEBUG Processing 728/1146 atomic regions from SNP 218379 to 218979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,798 DEBUG Processing 791/1038 atomic regions from SNP 237175 to 237775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,948 DEBUG Processing 901/918 atomic regions from SNP 270257 to 270857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:36,974 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:48:37,062 DEBUG Processing 729/1146 atomic regions from SNP 218679 to 219279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,081 DEBUG Processing 792/1038 atomic regions from SNP 237475 to 238075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,210 DEBUG Processing 902/918 atomic regions from SNP 270557 to 271157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:37,361 DEBUG Processing 730/1146 atomic regions from SNP 218979 to 219579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,363 DEBUG Processing 793/1038 atomic regions from SNP 237775 to 238375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,475 DEBUG Processing 903/918 atomic regions from SNP 270857 to 271457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:37,603 DEBUG Subchromosome time: 270.5821129489923, subchromosome SNPs: 261874 2025-01-31 09:48:37,604 DEBUG Estimated BADs: [3.17, 1.59, 3.17, 9.51, 3.17, 6.34, 3.17, 1.59, 3.17, 0.79, 3.17, 1.06, 3.17, 1.06, 3.17, 6.34, 3.17, 6.34, 3.17] SNP counts: [4921, 23298, 6197, 1196, 9665, 11731, 5684, 19911, 6319, 15249, 9573, 5443, 11965, 17126, 36060, 28765, 16186, 20546, 12039] SNP IDs counts: [4921, 23298, 6197, 1196, 9665, 11731, 5684, 19911, 6319, 15249, 9573, 5443, 11965, 17126, 36060, 28765, 16186, 20546, 12039] Critical gap: 667724bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.88Mbp, 20.87Mbp, 24.32Mbp, 24.94Mbp, 30.45Mbp, 36.70Mbp, 39.76Mbp, 51.05Mbp, 54.40Mbp, 63.30Mbp, 68.48Mbp, 71.66Mbp, 78.13Mbp, 88.01Mbp, 110.27Mbp, 125.34Mbp, 134.01Mbp, 145.07Mbp, 151.83Mbp] 2025-01-31 09:48:37,604 DEBUG chr5 time: 270.58270578598604 s 2025-01-31 09:48:37,648 DEBUG Processing 794/1038 atomic regions from SNP 238075 to 238675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,665 DEBUG Processing 731/1146 atomic regions from SNP 219279 to 219879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,738 DEBUG Processing 904/918 atomic regions from SNP 271157 to 271757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:37,753 DEBUG chr5: Fitting background model for 19 segments 2025-01-31 09:48:37,941 DEBUG Processing 795/1038 atomic regions from SNP 238375 to 238975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,971 DEBUG Processing 732/1146 atomic regions from SNP 219579 to 220179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,007 DEBUG Processing 905/918 atomic regions from SNP 271457 to 272057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:38,231 DEBUG Processing 796/1038 atomic regions from SNP 238675 to 239275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,270 DEBUG Processing 733/1146 atomic regions from SNP 219879 to 220479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,272 DEBUG Processing 906/918 atomic regions from SNP 271757 to 272357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:38,519 DEBUG Processing 797/1038 atomic regions from SNP 238975 to 239575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,542 DEBUG Processing 907/918 atomic regions from SNP 272057 to 272657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:38,571 DEBUG Processing 734/1146 atomic regions from SNP 220179 to 220779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,808 DEBUG Processing 798/1038 atomic regions from SNP 239275 to 239875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,809 DEBUG Processing 908/918 atomic regions from SNP 272357 to 272957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:38,877 DEBUG Processing 735/1146 atomic regions from SNP 220479 to 221079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,079 DEBUG Processing 909/918 atomic regions from SNP 272657 to 273257 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:39,102 DEBUG Processing 799/1038 atomic regions from SNP 239575 to 240175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,195 DEBUG Processing 736/1146 atomic regions from SNP 220779 to 221379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,347 DEBUG Processing 910/918 atomic regions from SNP 272957 to 273557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:39,389 DEBUG Processing 800/1038 atomic regions from SNP 239875 to 240475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,522 DEBUG Processing 737/1146 atomic regions from SNP 221079 to 221679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,612 DEBUG Processing 911/918 atomic regions from SNP 273257 to 273857 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:39,678 DEBUG Processing 801/1038 atomic regions from SNP 240175 to 240775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,840 DEBUG Processing 738/1146 atomic regions from SNP 221379 to 221979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,887 DEBUG Processing 912/918 atomic regions from SNP 273557 to 274157 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:39,965 DEBUG Processing 802/1038 atomic regions from SNP 240475 to 241075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,146 DEBUG Processing 739/1146 atomic regions from SNP 221679 to 222279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,158 DEBUG Processing 913/918 atomic regions from SNP 273857 to 274457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:40,247 DEBUG Processing 803/1038 atomic regions from SNP 240775 to 241375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,429 DEBUG Processing 914/918 atomic regions from SNP 274157 to 274757 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:40,472 DEBUG Processing 740/1146 atomic regions from SNP 221979 to 222579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,537 DEBUG Processing 804/1038 atomic regions from SNP 241075 to 241675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,702 DEBUG Processing 915/918 atomic regions from SNP 274457 to 275057 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:40,804 DEBUG Processing 741/1146 atomic regions from SNP 222279 to 222879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,831 DEBUG Processing 805/1038 atomic regions from SNP 241375 to 241975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,973 DEBUG Processing 916/918 atomic regions from SNP 274757 to 275357 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:41,111 DEBUG Processing 742/1146 atomic regions from SNP 222579 to 223179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,123 DEBUG Processing 806/1038 atomic regions from SNP 241675 to 242275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,250 DEBUG Processing 917/918 atomic regions from SNP 275057 to 275657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:41,402 DEBUG Processing 743/1146 atomic regions from SNP 222879 to 223479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,411 DEBUG Processing 807/1038 atomic regions from SNP 241975 to 242575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,524 DEBUG Processing 918/918 atomic regions from SNP 275357 to 275957 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:41,677 DEBUG Unique SNPs positions in subchromosome 1: 275958 2025-01-31 09:48:41,686 DEBUG Processing 744/1146 atomic regions from SNP 223179 to 223779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,698 DEBUG Processing 808/1038 atomic regions from SNP 242275 to 242875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,975 DEBUG Processing 745/1146 atomic regions from SNP 223479 to 224079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,988 DEBUG Processing 809/1038 atomic regions from SNP 242575 to 243175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,273 DEBUG Processing 746/1146 atomic regions from SNP 223779 to 224379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,282 DEBUG Processing 810/1038 atomic regions from SNP 242875 to 243475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,564 DEBUG Processing 811/1038 atomic regions from SNP 243175 to 243775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,565 DEBUG Processing 747/1146 atomic regions from SNP 224079 to 224679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,844 DEBUG Processing 812/1038 atomic regions from SNP 243475 to 244075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,856 DEBUG Processing 748/1146 atomic regions from SNP 224379 to 224979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,128 DEBUG Processing 813/1038 atomic regions from SNP 243775 to 244375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,145 DEBUG Processing 749/1146 atomic regions from SNP 224679 to 225279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,415 DEBUG Processing 814/1038 atomic regions from SNP 244075 to 244675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,437 DEBUG Processing 750/1146 atomic regions from SNP 224979 to 225579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,702 DEBUG Processing 815/1038 atomic regions from SNP 244375 to 244975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,727 DEBUG Processing 751/1146 atomic regions from SNP 225279 to 225879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,986 DEBUG Processing 816/1038 atomic regions from SNP 244675 to 245275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,031 DEBUG Processing 752/1146 atomic regions from SNP 225579 to 226179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,317 DEBUG Processing 817/1038 atomic regions from SNP 244975 to 245575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,365 DEBUG Processing 753/1146 atomic regions from SNP 225879 to 226479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,606 DEBUG Processing 818/1038 atomic regions from SNP 245275 to 245875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,665 DEBUG Processing 754/1146 atomic regions from SNP 226179 to 226779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,893 DEBUG Processing 819/1038 atomic regions from SNP 245575 to 246175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,978 DEBUG Processing 755/1146 atomic regions from SNP 226479 to 227079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,176 DEBUG Processing 820/1038 atomic regions from SNP 245875 to 246475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,286 DEBUG Processing 756/1146 atomic regions from SNP 226779 to 227379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,458 DEBUG Processing 821/1038 atomic regions from SNP 246175 to 246775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,607 DEBUG Processing 757/1146 atomic regions from SNP 227079 to 227679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,742 DEBUG Processing 822/1038 atomic regions from SNP 246475 to 247075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,929 DEBUG Processing 758/1146 atomic regions from SNP 227379 to 227979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,034 DEBUG Processing 823/1038 atomic regions from SNP 246775 to 247375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,235 DEBUG Processing 759/1146 atomic regions from SNP 227679 to 228279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,317 DEBUG Processing 824/1038 atomic regions from SNP 247075 to 247675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,557 DEBUG Processing 760/1146 atomic regions from SNP 227979 to 228579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,597 DEBUG Processing 825/1038 atomic regions from SNP 247375 to 247975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,866 DEBUG Processing 761/1146 atomic regions from SNP 228279 to 228879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,875 DEBUG Processing 826/1038 atomic regions from SNP 247675 to 248275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,158 DEBUG Processing 827/1038 atomic regions from SNP 247975 to 248575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,182 DEBUG Processing 762/1146 atomic regions from SNP 228579 to 229179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,443 DEBUG Processing 828/1038 atomic regions from SNP 248275 to 248875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,511 DEBUG Processing 763/1146 atomic regions from SNP 228879 to 229479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,730 DEBUG Processing 829/1038 atomic regions from SNP 248575 to 249175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,835 DEBUG Processing 764/1146 atomic regions from SNP 229179 to 229779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,018 DEBUG Processing 830/1038 atomic regions from SNP 248875 to 249475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,170 DEBUG Processing 765/1146 atomic regions from SNP 229479 to 230079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,305 DEBUG Processing 831/1038 atomic regions from SNP 249175 to 249775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,498 DEBUG Processing 766/1146 atomic regions from SNP 229779 to 230379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,585 DEBUG Processing 832/1038 atomic regions from SNP 249475 to 250075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,813 DEBUG Processing 767/1146 atomic regions from SNP 230079 to 230679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,867 DEBUG Processing 833/1038 atomic regions from SNP 249775 to 250375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,135 DEBUG Processing 768/1146 atomic regions from SNP 230379 to 230979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,155 DEBUG Processing 834/1038 atomic regions from SNP 250075 to 250675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,437 DEBUG Processing 835/1038 atomic regions from SNP 250375 to 250975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,460 DEBUG Processing 769/1146 atomic regions from SNP 230679 to 231279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,719 DEBUG Processing 836/1038 atomic regions from SNP 250675 to 251275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,789 DEBUG Processing 770/1146 atomic regions from SNP 230979 to 231579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,005 DEBUG Processing 837/1038 atomic regions from SNP 250975 to 251575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,117 DEBUG Processing 771/1146 atomic regions from SNP 231279 to 231879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,291 DEBUG Processing 838/1038 atomic regions from SNP 251275 to 251875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,443 DEBUG Processing 772/1146 atomic regions from SNP 231579 to 232179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,578 DEBUG Processing 839/1038 atomic regions from SNP 251575 to 252175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,765 DEBUG Processing 773/1146 atomic regions from SNP 231879 to 232479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,863 DEBUG Processing 840/1038 atomic regions from SNP 251875 to 252475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,101 DEBUG Processing 774/1146 atomic regions from SNP 232179 to 232779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,152 DEBUG Processing 841/1038 atomic regions from SNP 252175 to 252775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,438 DEBUG Processing 775/1146 atomic regions from SNP 232479 to 233079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,444 DEBUG Processing 842/1038 atomic regions from SNP 252475 to 253075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,730 DEBUG Processing 843/1038 atomic regions from SNP 252775 to 253375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,773 DEBUG Processing 776/1146 atomic regions from SNP 232779 to 233379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,019 DEBUG Processing 844/1038 atomic regions from SNP 253075 to 253675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,114 DEBUG Processing 777/1146 atomic regions from SNP 233079 to 233679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,309 DEBUG Processing 845/1038 atomic regions from SNP 253375 to 253975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,452 DEBUG Processing 778/1146 atomic regions from SNP 233379 to 233979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,597 DEBUG Processing 846/1038 atomic regions from SNP 253675 to 254275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,785 DEBUG Processing 779/1146 atomic regions from SNP 233679 to 234279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,923 DEBUG Processing 847/1038 atomic regions from SNP 253975 to 254575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,148 DEBUG Processing 780/1146 atomic regions from SNP 233979 to 234579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,246 DEBUG Processing 848/1038 atomic regions from SNP 254275 to 254875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,472 DEBUG Processing 781/1146 atomic regions from SNP 234279 to 234879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,545 DEBUG Processing 849/1038 atomic regions from SNP 254575 to 255175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,798 DEBUG Processing 782/1146 atomic regions from SNP 234579 to 235179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,848 DEBUG Processing 850/1038 atomic regions from SNP 254875 to 255475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,057 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:48:54,059 DEBUG chr6: Signal quantile: 0.995. signal threshold: 18. Best RMSEA: 0.047 2025-01-31 09:48:54,138 DEBUG Processing 783/1146 atomic regions from SNP 234879 to 235479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,154 DEBUG Processing 851/1038 atomic regions from SNP 255175 to 255775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,455 DEBUG Processing 852/1038 atomic regions from SNP 255475 to 256075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,475 DEBUG Processing 784/1146 atomic regions from SNP 235179 to 235779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,754 DEBUG Processing 853/1038 atomic regions from SNP 255775 to 256375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,813 DEBUG Processing 785/1146 atomic regions from SNP 235479 to 236079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,039 DEBUG Processing 854/1038 atomic regions from SNP 256075 to 256675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,145 DEBUG Processing 786/1146 atomic regions from SNP 235779 to 236379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,321 DEBUG Processing 855/1038 atomic regions from SNP 256375 to 256975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,479 DEBUG Processing 787/1146 atomic regions from SNP 236079 to 236679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,596 DEBUG Processing 856/1038 atomic regions from SNP 256675 to 257275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,800 DEBUG Processing 788/1146 atomic regions from SNP 236379 to 236979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,883 DEBUG Processing 857/1038 atomic regions from SNP 256975 to 257575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,133 DEBUG Processing 789/1146 atomic regions from SNP 236679 to 237279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,165 DEBUG Processing 858/1038 atomic regions from SNP 257275 to 257875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,442 DEBUG Processing 859/1038 atomic regions from SNP 257575 to 258175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,469 DEBUG Processing 790/1146 atomic regions from SNP 236979 to 237579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,722 DEBUG Processing 860/1038 atomic regions from SNP 257875 to 258475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,796 DEBUG Processing 791/1146 atomic regions from SNP 237279 to 237879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,956 DEBUG chr6 total SNP count: 260756 2025-01-31 09:48:56,956 DEBUG chr6 length: 149736546 2025-01-31 09:48:56,956 DEBUG ----------------------------------------- 2025-01-31 09:48:56,957 INFO Processing SNPs in chr6 2025-01-31 09:48:57,009 DEBUG Processing 861/1038 atomic regions from SNP 258175 to 258775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,124 DEBUG Processing 792/1146 atomic regions from SNP 237579 to 238179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,219 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 260756)] 2025-01-31 09:48:57,284 DEBUG Processing 862/1038 atomic regions from SNP 258475 to 259075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,397 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:57,436 DEBUG Processing 793/1146 atomic regions from SNP 237879 to 238479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,559 DEBUG Processing 863/1038 atomic regions from SNP 258775 to 259375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,728 DEBUG Processing 794/1146 atomic regions from SNP 238179 to 238779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,843 DEBUG Processing 864/1038 atomic regions from SNP 259075 to 259675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,021 DEBUG Processing 795/1146 atomic regions from SNP 238479 to 239079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,118 DEBUG Processing 865/1038 atomic regions from SNP 259375 to 259975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,314 DEBUG Processing 796/1146 atomic regions from SNP 238779 to 239379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,405 DEBUG Processing 866/1038 atomic regions from SNP 259675 to 260275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,601 DEBUG Processing 797/1146 atomic regions from SNP 239079 to 239679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,692 DEBUG Processing 867/1038 atomic regions from SNP 259975 to 260575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,889 DEBUG Processing 798/1146 atomic regions from SNP 239379 to 239979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,971 DEBUG Processing 868/1038 atomic regions from SNP 260275 to 260875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,180 DEBUG Processing 799/1146 atomic regions from SNP 239679 to 240279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,244 DEBUG Processing 869/1038 atomic regions from SNP 260575 to 261175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,467 DEBUG Processing 800/1146 atomic regions from SNP 239979 to 240579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,521 DEBUG Processing 870/1038 atomic regions from SNP 260875 to 261475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,753 DEBUG Processing 801/1146 atomic regions from SNP 240279 to 240879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,793 DEBUG Processing 871/1038 atomic regions from SNP 261175 to 261775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,039 DEBUG Processing 802/1146 atomic regions from SNP 240579 to 241179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,059 DEBUG Processing 872/1038 atomic regions from SNP 261475 to 262075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,325 DEBUG Processing 803/1146 atomic regions from SNP 240879 to 241479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,331 DEBUG Processing 873/1038 atomic regions from SNP 261775 to 262375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,604 DEBUG Processing 874/1038 atomic regions from SNP 262075 to 262675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,616 DEBUG Processing 804/1146 atomic regions from SNP 241179 to 241779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,866 DEBUG Processing 875/1038 atomic regions from SNP 262375 to 262975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,905 DEBUG Processing 805/1146 atomic regions from SNP 241479 to 242079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,133 DEBUG Processing 876/1038 atomic regions from SNP 262675 to 263275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:01,200 DEBUG Processing 806/1146 atomic regions from SNP 241779 to 242379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,404 DEBUG Processing 877/1038 atomic regions from SNP 262975 to 263575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:01,497 DEBUG Processing 807/1146 atomic regions from SNP 242079 to 242679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,673 DEBUG Processing 878/1038 atomic regions from SNP 263275 to 263875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:01,784 DEBUG Processing 808/1146 atomic regions from SNP 242379 to 242979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,945 DEBUG Processing 879/1038 atomic regions from SNP 263575 to 264175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,079 DEBUG Processing 809/1146 atomic regions from SNP 242679 to 243279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,216 DEBUG Processing 880/1038 atomic regions from SNP 263875 to 264475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,368 DEBUG Processing 810/1146 atomic regions from SNP 242979 to 243579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,501 DEBUG Processing 881/1038 atomic regions from SNP 264175 to 264775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,664 DEBUG Processing 811/1146 atomic regions from SNP 243279 to 243879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,771 DEBUG Processing 882/1038 atomic regions from SNP 264475 to 265075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,962 DEBUG Processing 812/1146 atomic regions from SNP 243579 to 244179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,042 DEBUG Processing 883/1038 atomic regions from SNP 264775 to 265375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,261 DEBUG Processing 813/1146 atomic regions from SNP 243879 to 244479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,311 DEBUG Processing 884/1038 atomic regions from SNP 265075 to 265675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,554 DEBUG Processing 814/1146 atomic regions from SNP 244179 to 244779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,578 DEBUG Processing 885/1038 atomic regions from SNP 265375 to 265975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,843 DEBUG Processing 886/1038 atomic regions from SNP 265675 to 266275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,845 DEBUG Processing 815/1146 atomic regions from SNP 244479 to 245079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,079 DEBUG Subchromosome time: 294.2289434269769, subchromosome SNPs: 275958 2025-01-31 09:49:04,079 DEBUG Estimated BADs: [1.74, 6.96, 1.74, 6.96, 1.74, 3.48, 1.16, 0.50, 6.96, 3.48, 1.16, 3.48, 6.96, 13.93, 3.48, 13.93, 6.96, 10.44, 3.48, 6.96, 3.48, 6.96, 1.74, 0.58, 1.74, 0.70, 1.74, 0.87] SNP counts: [9755, 2396, 14707, 1227, 12336, 17812, 11676, 8650, 5199, 33624, 12261, 13657, 4054, 5108, 5844, 4644, 18631, 2975, 21596, 2105, 9050, 17949, 3907, 4793, 8985, 8394, 6032, 8591] SNP IDs counts: [9755, 2396, 14707, 1227, 12336, 17812, 11676, 8650, 5199, 33624, 12261, 13657, 4054, 5108, 5844, 4644, 18631, 2975, 21596, 2105, 9050, 17949, 3907, 4793, 8985, 8394, 6032, 8591] Critical gap: 686394bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.79Mbp, 10.13Mbp, 19.11Mbp, 19.78Mbp, 27.04Mbp, 36.87Mbp, 43.59Mbp, 48.91Mbp, 51.85Mbp, 70.88Mbp, 77.99Mbp, 85.55Mbp, 87.73Mbp, 90.46Mbp, 94.34Mbp, 96.91Mbp, 107.20Mbp, 108.75Mbp, 121.14Mbp, 122.24Mbp, 127.19Mbp, 137.10Mbp, 139.26Mbp, 142.09Mbp, 146.97Mbp, 151.63Mbp, 154.90Mbp, 160.04Mbp] 2025-01-31 09:49:04,079 DEBUG chr3 time: 294.229629362002 s 2025-01-31 09:49:04,115 DEBUG Processing 887/1038 atomic regions from SNP 265975 to 266575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,135 DEBUG Processing 816/1146 atomic regions from SNP 244779 to 245379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,233 DEBUG chr3: Fitting background model for 28 segments 2025-01-31 09:49:04,401 DEBUG Processing 888/1038 atomic regions from SNP 266275 to 266875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,426 DEBUG Processing 817/1146 atomic regions from SNP 245079 to 245679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,699 DEBUG Processing 889/1038 atomic regions from SNP 266575 to 267175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,715 DEBUG Processing 818/1146 atomic regions from SNP 245379 to 245979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,993 DEBUG Processing 890/1038 atomic regions from SNP 266875 to 267475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,006 DEBUG Processing 819/1146 atomic regions from SNP 245679 to 246279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,265 DEBUG Processing 891/1038 atomic regions from SNP 267175 to 267775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,300 DEBUG Processing 820/1146 atomic regions from SNP 245979 to 246579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,544 DEBUG Processing 892/1038 atomic regions from SNP 267475 to 268075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,591 DEBUG Processing 821/1146 atomic regions from SNP 246279 to 246879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,817 DEBUG Processing 893/1038 atomic regions from SNP 267775 to 268375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,890 DEBUG Processing 822/1146 atomic regions from SNP 246579 to 247179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,100 DEBUG Processing 894/1038 atomic regions from SNP 268075 to 268675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,190 DEBUG Processing 823/1146 atomic regions from SNP 246879 to 247479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,404 DEBUG Processing 895/1038 atomic regions from SNP 268375 to 268975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,486 DEBUG Processing 824/1146 atomic regions from SNP 247179 to 247779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,701 DEBUG Processing 896/1038 atomic regions from SNP 268675 to 269275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,786 DEBUG Processing 825/1146 atomic regions from SNP 247479 to 248079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,006 DEBUG Processing 897/1038 atomic regions from SNP 268975 to 269575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,081 DEBUG Processing 826/1146 atomic regions from SNP 247779 to 248379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,290 DEBUG Processing 898/1038 atomic regions from SNP 269275 to 269875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,374 DEBUG Processing 827/1146 atomic regions from SNP 248079 to 248679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,590 DEBUG Processing 899/1038 atomic regions from SNP 269575 to 270175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,666 DEBUG Processing 828/1146 atomic regions from SNP 248379 to 248979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,896 DEBUG Processing 900/1038 atomic regions from SNP 269875 to 270475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,955 DEBUG Processing 829/1146 atomic regions from SNP 248679 to 249279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,185 DEBUG Processing 901/1038 atomic regions from SNP 270175 to 270775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,245 DEBUG Processing 830/1146 atomic regions from SNP 248979 to 249579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,481 DEBUG Processing 902/1038 atomic regions from SNP 270475 to 271075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,553 DEBUG Processing 831/1146 atomic regions from SNP 249279 to 249879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,779 DEBUG Processing 903/1038 atomic regions from SNP 270775 to 271375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,852 DEBUG Processing 832/1146 atomic regions from SNP 249579 to 250179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,081 DEBUG Processing 904/1038 atomic regions from SNP 271075 to 271675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,156 DEBUG Processing 833/1146 atomic regions from SNP 249879 to 250479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,385 DEBUG Processing 905/1038 atomic regions from SNP 271375 to 271975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,469 DEBUG Processing 834/1146 atomic regions from SNP 250179 to 250779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,682 DEBUG Processing 906/1038 atomic regions from SNP 271675 to 272275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,770 DEBUG Processing 835/1146 atomic regions from SNP 250479 to 251079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,972 DEBUG Processing 907/1038 atomic regions from SNP 271975 to 272575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,062 DEBUG Processing 836/1146 atomic regions from SNP 250779 to 251379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,251 DEBUG Processing 908/1038 atomic regions from SNP 272275 to 272875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,365 DEBUG Processing 837/1146 atomic regions from SNP 251079 to 251679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,552 DEBUG Processing 909/1038 atomic regions from SNP 272575 to 273175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,658 DEBUG Processing 838/1146 atomic regions from SNP 251379 to 251979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,848 DEBUG Processing 910/1038 atomic regions from SNP 272875 to 273475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,956 DEBUG Processing 839/1146 atomic regions from SNP 251679 to 252279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,150 DEBUG Processing 911/1038 atomic regions from SNP 273175 to 273775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,260 DEBUG Processing 840/1146 atomic regions from SNP 251979 to 252579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,442 DEBUG Processing 912/1038 atomic regions from SNP 273475 to 274075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,561 DEBUG Processing 841/1146 atomic regions from SNP 252279 to 252879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,728 DEBUG Processing 913/1038 atomic regions from SNP 273775 to 274375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,857 DEBUG Processing 842/1146 atomic regions from SNP 252579 to 253179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,029 DEBUG Processing 914/1038 atomic regions from SNP 274075 to 274675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,155 DEBUG Processing 843/1146 atomic regions from SNP 252879 to 253479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,311 DEBUG Processing 915/1038 atomic regions from SNP 274375 to 274975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,452 DEBUG Processing 844/1146 atomic regions from SNP 253179 to 253779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,598 DEBUG Processing 916/1038 atomic regions from SNP 274675 to 275275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,753 DEBUG Processing 845/1146 atomic regions from SNP 253479 to 254079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,901 DEBUG Processing 917/1038 atomic regions from SNP 274975 to 275575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,064 DEBUG Processing 846/1146 atomic regions from SNP 253779 to 254379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,205 DEBUG Processing 918/1038 atomic regions from SNP 275275 to 275875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,368 DEBUG Processing 847/1146 atomic regions from SNP 254079 to 254679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,506 DEBUG Processing 919/1038 atomic regions from SNP 275575 to 276175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,675 DEBUG Processing 848/1146 atomic regions from SNP 254379 to 254979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,814 DEBUG Processing 920/1038 atomic regions from SNP 275875 to 276475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,973 DEBUG Processing 849/1146 atomic regions from SNP 254679 to 255279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,105 DEBUG Processing 921/1038 atomic regions from SNP 276175 to 276775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,274 DEBUG Processing 850/1146 atomic regions from SNP 254979 to 255579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,402 DEBUG Processing 922/1038 atomic regions from SNP 276475 to 277075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,567 DEBUG Processing 851/1146 atomic regions from SNP 255279 to 255879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,697 DEBUG Processing 923/1038 atomic regions from SNP 276775 to 277375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,860 DEBUG Processing 852/1146 atomic regions from SNP 255579 to 256179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,000 DEBUG Processing 924/1038 atomic regions from SNP 277075 to 277675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,154 DEBUG Processing 853/1146 atomic regions from SNP 255879 to 256479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,312 DEBUG Processing 925/1038 atomic regions from SNP 277375 to 277975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,458 DEBUG Processing 854/1146 atomic regions from SNP 256179 to 256779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,630 DEBUG Processing 926/1038 atomic regions from SNP 277675 to 278275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,755 DEBUG Processing 855/1146 atomic regions from SNP 256479 to 257079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,924 DEBUG Processing 927/1038 atomic regions from SNP 277975 to 278575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,044 DEBUG Processing 856/1146 atomic regions from SNP 256779 to 257379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,218 DEBUG Processing 928/1038 atomic regions from SNP 278275 to 278875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,328 DEBUG Processing 857/1146 atomic regions from SNP 257079 to 257679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,415 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:49:16,523 DEBUG Processing 929/1038 atomic regions from SNP 278575 to 279175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,625 DEBUG Processing 858/1146 atomic regions from SNP 257379 to 257979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,831 DEBUG Processing 930/1038 atomic regions from SNP 278875 to 279475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,924 DEBUG Processing 859/1146 atomic regions from SNP 257679 to 258279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,129 DEBUG Processing 931/1038 atomic regions from SNP 279175 to 279775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,214 DEBUG Processing 860/1146 atomic regions from SNP 257979 to 258579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,433 DEBUG Processing 932/1038 atomic regions from SNP 279475 to 280075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,515 DEBUG Processing 861/1146 atomic regions from SNP 258279 to 258879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,738 DEBUG Processing 933/1038 atomic regions from SNP 279775 to 280375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,803 DEBUG Processing 862/1146 atomic regions from SNP 258579 to 259179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,956 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:49:18,034 DEBUG Processing 934/1038 atomic regions from SNP 280075 to 280675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,097 DEBUG Processing 863/1146 atomic regions from SNP 258879 to 259479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,344 DEBUG Processing 935/1038 atomic regions from SNP 280375 to 280975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,394 DEBUG Processing 864/1146 atomic regions from SNP 259179 to 259779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,656 DEBUG Processing 936/1038 atomic regions from SNP 280675 to 281275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,687 DEBUG Processing 865/1146 atomic regions from SNP 259479 to 260079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,961 DEBUG Processing 937/1038 atomic regions from SNP 280975 to 281575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,980 DEBUG Processing 866/1146 atomic regions from SNP 259779 to 260379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,256 DEBUG Processing 938/1038 atomic regions from SNP 281275 to 281875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,272 DEBUG Processing 867/1146 atomic regions from SNP 260079 to 260679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,541 DEBUG Processing 939/1038 atomic regions from SNP 281575 to 282175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,562 DEBUG Processing 868/1146 atomic regions from SNP 260379 to 260979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,817 DEBUG Processing 940/1038 atomic regions from SNP 281875 to 282475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,854 DEBUG Processing 869/1146 atomic regions from SNP 260679 to 261279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,085 DEBUG Processing 941/1038 atomic regions from SNP 282175 to 282775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,138 DEBUG Processing 870/1146 atomic regions from SNP 260979 to 261579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,366 DEBUG Processing 942/1038 atomic regions from SNP 282475 to 283075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,420 DEBUG Processing 871/1146 atomic regions from SNP 261279 to 261879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,652 DEBUG Processing 943/1038 atomic regions from SNP 282775 to 283375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,705 DEBUG Processing 872/1146 atomic regions from SNP 261579 to 262179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,930 DEBUG Processing 944/1038 atomic regions from SNP 283075 to 283675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,987 DEBUG Processing 873/1146 atomic regions from SNP 261879 to 262479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,202 DEBUG Processing 945/1038 atomic regions from SNP 283375 to 283975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:21,274 DEBUG Processing 874/1146 atomic regions from SNP 262179 to 262779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,485 DEBUG Processing 946/1038 atomic regions from SNP 283675 to 284275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:21,568 DEBUG Processing 875/1146 atomic regions from SNP 262479 to 263079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,774 DEBUG Processing 947/1038 atomic regions from SNP 283975 to 284575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:21,876 DEBUG Processing 876/1146 atomic regions from SNP 262779 to 263379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,063 DEBUG Processing 948/1038 atomic regions from SNP 284275 to 284875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:22,179 DEBUG Processing 877/1146 atomic regions from SNP 263079 to 263679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,373 DEBUG Processing 949/1038 atomic regions from SNP 284575 to 285175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:22,485 DEBUG Processing 878/1146 atomic regions from SNP 263379 to 263979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,662 DEBUG Processing 950/1038 atomic regions from SNP 284875 to 285475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:22,795 DEBUG Processing 879/1146 atomic regions from SNP 263679 to 264279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,953 DEBUG Processing 951/1038 atomic regions from SNP 285175 to 285775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:23,106 DEBUG Processing 880/1146 atomic regions from SNP 263979 to 264579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,235 DEBUG Processing 952/1038 atomic regions from SNP 285475 to 286075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:23,421 DEBUG Processing 881/1146 atomic regions from SNP 264279 to 264879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,525 DEBUG Processing 953/1038 atomic regions from SNP 285775 to 286375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:23,733 DEBUG Processing 882/1146 atomic regions from SNP 264579 to 265179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,801 DEBUG Processing 954/1038 atomic regions from SNP 286075 to 286675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,039 DEBUG Processing 883/1146 atomic regions from SNP 264879 to 265479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,086 DEBUG Processing 955/1038 atomic regions from SNP 286375 to 286975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,348 DEBUG Processing 884/1146 atomic regions from SNP 265179 to 265779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,379 DEBUG Processing 956/1038 atomic regions from SNP 286675 to 287275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,647 DEBUG Processing 885/1146 atomic regions from SNP 265479 to 266079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,659 DEBUG Processing 957/1038 atomic regions from SNP 286975 to 287575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,943 DEBUG Processing 958/1038 atomic regions from SNP 287275 to 287875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,961 DEBUG Processing 886/1146 atomic regions from SNP 265779 to 266379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,231 DEBUG Processing 959/1038 atomic regions from SNP 287575 to 288175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:25,279 DEBUG Processing 887/1146 atomic regions from SNP 266079 to 266679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,515 DEBUG Processing 960/1038 atomic regions from SNP 287875 to 288475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:25,589 DEBUG Processing 888/1146 atomic regions from SNP 266379 to 266979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,801 DEBUG Processing 961/1038 atomic regions from SNP 288175 to 288775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:25,907 DEBUG Processing 889/1146 atomic regions from SNP 266679 to 267279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,081 DEBUG Processing 962/1038 atomic regions from SNP 288475 to 289075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:26,222 DEBUG Processing 890/1146 atomic regions from SNP 266979 to 267579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,377 DEBUG Processing 963/1038 atomic regions from SNP 288775 to 289375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:26,513 DEBUG Processing 891/1146 atomic regions from SNP 267279 to 267879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,686 DEBUG Processing 964/1038 atomic regions from SNP 289075 to 289675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:26,803 DEBUG Processing 892/1146 atomic regions from SNP 267579 to 268179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,991 DEBUG Processing 965/1038 atomic regions from SNP 289375 to 289975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:27,103 DEBUG Processing 893/1146 atomic regions from SNP 267879 to 268479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,310 DEBUG Processing 966/1038 atomic regions from SNP 289675 to 290275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:27,406 DEBUG Processing 894/1146 atomic regions from SNP 268179 to 268779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,637 DEBUG Processing 967/1038 atomic regions from SNP 289975 to 290575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:27,730 DEBUG Processing 895/1146 atomic regions from SNP 268479 to 269079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,955 DEBUG Processing 968/1038 atomic regions from SNP 290275 to 290875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:28,021 DEBUG Processing 896/1146 atomic regions from SNP 268779 to 269379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,254 DEBUG Processing 969/1038 atomic regions from SNP 290575 to 291175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:28,306 DEBUG Processing 897/1146 atomic regions from SNP 269079 to 269679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,550 DEBUG Processing 970/1038 atomic regions from SNP 290875 to 291475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:28,593 DEBUG Processing 898/1146 atomic regions from SNP 269379 to 269979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,737 DEBUG Segmenting atomic regions: 2025-01-31 09:49:28,853 DEBUG Processing 971/1038 atomic regions from SNP 291175 to 291775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:28,854 DEBUG Processing 1/868 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,892 DEBUG Processing 899/1146 atomic regions from SNP 269679 to 270279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,121 DEBUG Processing 2/868 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,156 DEBUG Processing 972/1038 atomic regions from SNP 291475 to 292075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:29,211 DEBUG Processing 900/1146 atomic regions from SNP 269979 to 270579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,380 DEBUG Processing 3/868 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,470 DEBUG Processing 973/1038 atomic regions from SNP 291775 to 292375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:29,543 DEBUG Processing 901/1146 atomic regions from SNP 270279 to 270879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,635 DEBUG Processing 4/868 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,786 DEBUG Processing 974/1038 atomic regions from SNP 292075 to 292675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:29,856 DEBUG Processing 902/1146 atomic regions from SNP 270579 to 271179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,894 DEBUG Processing 5/868 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,114 DEBUG Processing 975/1038 atomic regions from SNP 292375 to 292975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:30,164 DEBUG Processing 6/868 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,173 DEBUG Processing 903/1146 atomic regions from SNP 270879 to 271479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,438 DEBUG Processing 7/868 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,452 DEBUG Processing 976/1038 atomic regions from SNP 292675 to 293275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:30,498 DEBUG Processing 904/1146 atomic regions from SNP 271179 to 271779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,711 DEBUG Processing 8/868 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,779 DEBUG Processing 977/1038 atomic regions from SNP 292975 to 293575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:30,819 DEBUG Processing 905/1146 atomic regions from SNP 271479 to 272079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,969 DEBUG Processing 9/868 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,088 DEBUG Processing 978/1038 atomic regions from SNP 293275 to 293875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:31,123 DEBUG Processing 906/1146 atomic regions from SNP 271779 to 272379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,219 DEBUG Processing 10/868 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,404 DEBUG Processing 979/1038 atomic regions from SNP 293575 to 294175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:31,442 DEBUG Processing 907/1146 atomic regions from SNP 272079 to 272679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,468 DEBUG Processing 11/868 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,713 DEBUG Processing 980/1038 atomic regions from SNP 293875 to 294475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:31,732 DEBUG Processing 12/868 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,754 DEBUG Processing 908/1146 atomic regions from SNP 272379 to 272979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,008 DEBUG Processing 13/868 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,023 DEBUG Processing 981/1038 atomic regions from SNP 294175 to 294775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:32,061 DEBUG Processing 909/1146 atomic regions from SNP 272679 to 273279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,298 DEBUG Processing 14/868 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,362 DEBUG Processing 982/1038 atomic regions from SNP 294475 to 295075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:32,384 DEBUG Processing 910/1146 atomic regions from SNP 272979 to 273579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,560 DEBUG Processing 15/868 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,690 DEBUG Processing 983/1038 atomic regions from SNP 294775 to 295375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:32,711 DEBUG Processing 911/1146 atomic regions from SNP 273279 to 273879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,813 DEBUG Processing 16/868 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,002 DEBUG Processing 984/1038 atomic regions from SNP 295075 to 295675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:33,029 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:49:33,031 DEBUG chr10: Signal quantile: 0.995. signal threshold: 20. Best RMSEA: 0.042 2025-01-31 09:49:33,032 DEBUG Processing 912/1146 atomic regions from SNP 273579 to 274179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,068 DEBUG Processing 17/868 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,314 DEBUG Processing 985/1038 atomic regions from SNP 295375 to 295975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:33,333 DEBUG Processing 18/868 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,354 DEBUG Processing 913/1146 atomic regions from SNP 273879 to 274479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,605 DEBUG Processing 19/868 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,645 DEBUG Processing 986/1038 atomic regions from SNP 295675 to 296275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:33,669 DEBUG Processing 914/1146 atomic regions from SNP 274179 to 274779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,878 DEBUG Processing 20/868 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,976 DEBUG Processing 987/1038 atomic regions from SNP 295975 to 296575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:33,976 DEBUG Processing 915/1146 atomic regions from SNP 274479 to 275079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,144 DEBUG Processing 21/868 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,285 DEBUG Processing 916/1146 atomic regions from SNP 274779 to 275379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,296 DEBUG Processing 988/1038 atomic regions from SNP 296275 to 296875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:34,413 DEBUG Processing 22/868 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,597 DEBUG Processing 917/1146 atomic regions from SNP 275079 to 275679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,640 DEBUG Processing 989/1038 atomic regions from SNP 296575 to 297175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:34,685 DEBUG Processing 23/868 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,913 DEBUG Processing 918/1146 atomic regions from SNP 275379 to 275979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,968 DEBUG Processing 24/868 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,001 DEBUG Processing 990/1038 atomic regions from SNP 296875 to 297475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:35,211 DEBUG Processing 919/1146 atomic regions from SNP 275679 to 276279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,229 DEBUG Processing 25/868 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,322 DEBUG Processing 991/1038 atomic regions from SNP 297175 to 297775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:35,326 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:49:35,327 DEBUG chr7: Signal quantile: 0.995. signal threshold: 29. Best RMSEA: 0.032 2025-01-31 09:49:35,480 DEBUG Processing 26/868 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,487 DEBUG chr10 total SNP count: 228201 2025-01-31 09:49:35,487 DEBUG chr10 length: 130694993 2025-01-31 09:49:35,487 DEBUG ----------------------------------------- 2025-01-31 09:49:35,488 INFO Processing SNPs in chr10 2025-01-31 09:49:35,507 DEBUG Processing 920/1146 atomic regions from SNP 275979 to 276579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,647 DEBUG Processing 992/1038 atomic regions from SNP 297475 to 298075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:35,716 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 228201)] 2025-01-31 09:49:35,738 DEBUG Processing 27/868 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,804 DEBUG Processing 921/1146 atomic regions from SNP 276279 to 276879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,873 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:35,988 DEBUG Processing 993/1038 atomic regions from SNP 297775 to 298375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:36,026 DEBUG Processing 28/868 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,105 DEBUG Processing 922/1146 atomic regions from SNP 276579 to 277179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,307 DEBUG Processing 29/868 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,331 DEBUG Processing 994/1038 atomic regions from SNP 298075 to 298675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:36,407 DEBUG Processing 923/1146 atomic regions from SNP 276879 to 277479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,574 DEBUG Processing 30/868 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,666 DEBUG Processing 995/1038 atomic regions from SNP 298375 to 298975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:36,703 DEBUG Processing 924/1146 atomic regions from SNP 277179 to 277779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,842 DEBUG Processing 31/868 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,994 DEBUG Processing 925/1146 atomic regions from SNP 277479 to 278079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,001 DEBUG Processing 996/1038 atomic regions from SNP 298675 to 299275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:37,116 DEBUG Processing 32/868 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,298 DEBUG Processing 926/1146 atomic regions from SNP 277779 to 278379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,329 DEBUG Processing 997/1038 atomic regions from SNP 298975 to 299575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:37,391 DEBUG Processing 33/868 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,602 DEBUG Processing 927/1146 atomic regions from SNP 278079 to 278679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,638 DEBUG Processing 998/1038 atomic regions from SNP 299275 to 299875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:37,667 DEBUG Processing 34/868 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,903 DEBUG Processing 928/1146 atomic regions from SNP 278379 to 278979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,933 DEBUG Processing 35/868 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,940 DEBUG Processing 999/1038 atomic regions from SNP 299575 to 300175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:38,063 DEBUG chr7 total SNP count: 236887 2025-01-31 09:49:38,063 DEBUG chr7 length: 145441459 2025-01-31 09:49:38,063 DEBUG ----------------------------------------- 2025-01-31 09:49:38,064 INFO Processing SNPs in chr7 2025-01-31 09:49:38,201 DEBUG Processing 929/1146 atomic regions from SNP 278679 to 279279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,207 DEBUG Processing 36/868 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,247 DEBUG Processing 1000/1038 atomic regions from SNP 299875 to 300475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:38,445 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 21448), (21448, 21491), (21491, 236887)] 2025-01-31 09:49:38,474 DEBUG Processing 37/868 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,501 DEBUG Processing 930/1146 atomic regions from SNP 278979 to 279579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,542 DEBUG Processing 1001/1038 atomic regions from SNP 300175 to 300775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:38,553 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:38,738 DEBUG Processing 38/868 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,802 DEBUG Processing 931/1146 atomic regions from SNP 279279 to 279879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,835 DEBUG Processing 1002/1038 atomic regions from SNP 300475 to 301075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:39,002 DEBUG Processing 39/868 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,116 DEBUG Processing 932/1146 atomic regions from SNP 279579 to 280179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,121 DEBUG Processing 1003/1038 atomic regions from SNP 300775 to 301375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:39,253 DEBUG Processing 40/868 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,399 DEBUG Processing 1004/1038 atomic regions from SNP 301075 to 301675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:39,418 DEBUG Processing 933/1146 atomic regions from SNP 279879 to 280479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,499 DEBUG Processing 41/868 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,684 DEBUG Processing 1005/1038 atomic regions from SNP 301375 to 301975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:39,706 DEBUG Processing 934/1146 atomic regions from SNP 280179 to 280779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,743 DEBUG Processing 42/868 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,970 DEBUG Processing 1006/1038 atomic regions from SNP 301675 to 302275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:39,990 DEBUG Processing 935/1146 atomic regions from SNP 280479 to 281079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,992 DEBUG Processing 43/868 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,245 DEBUG Processing 44/868 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,257 DEBUG Processing 1007/1038 atomic regions from SNP 301975 to 302575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:40,283 DEBUG Processing 936/1146 atomic regions from SNP 280779 to 281379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,495 DEBUG Processing 45/868 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,550 DEBUG Processing 1008/1038 atomic regions from SNP 302275 to 302875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:40,585 DEBUG Processing 937/1146 atomic regions from SNP 281079 to 281679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,744 DEBUG Processing 46/868 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,860 DEBUG Processing 1009/1038 atomic regions from SNP 302575 to 303175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:40,891 DEBUG Processing 938/1146 atomic regions from SNP 281379 to 281979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,989 DEBUG Processing 47/868 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,130 DEBUG Segmenting atomic regions: 2025-01-31 09:49:41,167 DEBUG Processing 1010/1038 atomic regions from SNP 302875 to 303475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:41,202 DEBUG Processing 939/1146 atomic regions from SNP 281679 to 282279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,234 DEBUG Processing 1/70 atomic regions from SNP 0 to 603 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:41,236 DEBUG Processing 48/868 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,464 DEBUG Processing 2/70 atomic regions from SNP 303 to 906 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:41,468 DEBUG Processing 1011/1038 atomic regions from SNP 303175 to 303775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:41,493 DEBUG Processing 49/868 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,510 DEBUG Processing 940/1146 atomic regions from SNP 281979 to 282579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,693 DEBUG Processing 3/70 atomic regions from SNP 606 to 1209 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:41,745 DEBUG Processing 50/868 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,760 DEBUG Processing 1012/1038 atomic regions from SNP 303475 to 304075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:41,792 DEBUG Processing 941/1146 atomic regions from SNP 282279 to 282879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,942 DEBUG Processing 4/70 atomic regions from SNP 909 to 1512 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:41,987 DEBUG Processing 51/868 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,039 DEBUG Processing 1013/1038 atomic regions from SNP 303775 to 304375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:42,092 DEBUG Processing 942/1146 atomic regions from SNP 282579 to 283179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,181 DEBUG Processing 5/70 atomic regions from SNP 1212 to 1815 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:42,230 DEBUG Processing 52/868 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,328 DEBUG Processing 1014/1038 atomic regions from SNP 304075 to 304675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:42,399 DEBUG Processing 943/1146 atomic regions from SNP 282879 to 283479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,419 DEBUG Processing 6/70 atomic regions from SNP 1515 to 2118 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:42,466 DEBUG Processing 53/868 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,620 DEBUG Processing 1015/1038 atomic regions from SNP 304375 to 304975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:42,658 DEBUG Processing 7/70 atomic regions from SNP 1818 to 2421 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:42,704 DEBUG Processing 944/1146 atomic regions from SNP 283179 to 283779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,705 DEBUG Processing 54/868 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,912 DEBUG Processing 1016/1038 atomic regions from SNP 304675 to 305275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:42,915 DEBUG Processing 8/70 atomic regions from SNP 2121 to 2723 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:42,948 DEBUG Processing 55/868 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,986 DEBUG Processing 945/1146 atomic regions from SNP 283479 to 284079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,177 DEBUG Processing 9/70 atomic regions from SNP 2423 to 3025 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:43,193 DEBUG Processing 56/868 atomic regions from SNP 16555 to 17155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,196 DEBUG Processing 1017/1038 atomic regions from SNP 304975 to 305575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:43,274 DEBUG Processing 946/1146 atomic regions from SNP 283779 to 284379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,434 DEBUG Processing 57/868 atomic regions from SNP 16855 to 17455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,438 DEBUG Processing 10/70 atomic regions from SNP 2725 to 3327 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:43,475 DEBUG Processing 1018/1038 atomic regions from SNP 305275 to 305875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:43,569 DEBUG Processing 947/1146 atomic regions from SNP 284079 to 284679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,676 DEBUG Processing 58/868 atomic regions from SNP 17155 to 17755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,701 DEBUG Processing 11/70 atomic regions from SNP 3027 to 3629 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:43,755 DEBUG Processing 1019/1038 atomic regions from SNP 305575 to 306175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:43,866 DEBUG Processing 948/1146 atomic regions from SNP 284379 to 284979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,916 DEBUG Processing 59/868 atomic regions from SNP 17455 to 18055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,935 DEBUG Processing 12/70 atomic regions from SNP 3329 to 3931 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:44,031 DEBUG Processing 1020/1038 atomic regions from SNP 305875 to 306475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:44,152 DEBUG Processing 949/1146 atomic regions from SNP 284679 to 285279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,159 DEBUG Processing 60/868 atomic regions from SNP 17755 to 18355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,163 DEBUG Processing 13/70 atomic regions from SNP 3631 to 4233 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:44,311 DEBUG Processing 1021/1038 atomic regions from SNP 306175 to 306775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:44,398 DEBUG Processing 14/70 atomic regions from SNP 3933 to 4535 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:44,403 DEBUG Processing 61/868 atomic regions from SNP 18055 to 18655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,442 DEBUG Processing 950/1146 atomic regions from SNP 284979 to 285579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,609 DEBUG Processing 1022/1038 atomic regions from SNP 306475 to 307075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:44,634 DEBUG Processing 15/70 atomic regions from SNP 4235 to 4837 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:44,652 DEBUG Processing 62/868 atomic regions from SNP 18355 to 18955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,725 DEBUG Processing 951/1146 atomic regions from SNP 285279 to 285879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,868 DEBUG Processing 16/70 atomic regions from SNP 4537 to 5139 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:44,902 DEBUG Processing 63/868 atomic regions from SNP 18655 to 19255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,927 DEBUG Processing 1023/1038 atomic regions from SNP 306775 to 307375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:45,002 DEBUG Processing 952/1146 atomic regions from SNP 285579 to 286179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,120 DEBUG Processing 17/70 atomic regions from SNP 4839 to 5441 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:45,152 DEBUG Processing 64/868 atomic regions from SNP 18955 to 19555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,225 DEBUG Processing 1024/1038 atomic regions from SNP 307075 to 307675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:45,282 DEBUG Processing 953/1146 atomic regions from SNP 285879 to 286479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,376 DEBUG Processing 18/70 atomic regions from SNP 5141 to 5743 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:45,394 DEBUG Processing 65/868 atomic regions from SNP 19255 to 19855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,503 DEBUG Processing 1025/1038 atomic regions from SNP 307375 to 307975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:45,564 DEBUG Processing 954/1146 atomic regions from SNP 286179 to 286779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,604 DEBUG Processing 19/70 atomic regions from SNP 5443 to 6045 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:45,637 DEBUG Processing 66/868 atomic regions from SNP 19555 to 20155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,793 DEBUG Processing 1026/1038 atomic regions from SNP 307675 to 308275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:45,850 DEBUG Processing 955/1146 atomic regions from SNP 286479 to 287079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,867 DEBUG Processing 20/70 atomic regions from SNP 5745 to 6347 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:45,880 DEBUG Processing 67/868 atomic regions from SNP 19855 to 20455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,110 DEBUG Processing 1027/1038 atomic regions from SNP 307975 to 308575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:46,118 DEBUG Processing 21/70 atomic regions from SNP 6047 to 6649 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:46,126 DEBUG Processing 68/868 atomic regions from SNP 20155 to 20755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,149 DEBUG Processing 956/1146 atomic regions from SNP 286779 to 287379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,356 DEBUG Processing 22/70 atomic regions from SNP 6349 to 6951 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:46,374 DEBUG Processing 69/868 atomic regions from SNP 20455 to 21055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,417 DEBUG Processing 1028/1038 atomic regions from SNP 308275 to 308875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:46,457 DEBUG Processing 957/1146 atomic regions from SNP 287079 to 287679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,586 DEBUG Processing 23/70 atomic regions from SNP 6651 to 7253 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:46,616 DEBUG Processing 70/868 atomic regions from SNP 20755 to 21355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,698 DEBUG Processing 1029/1038 atomic regions from SNP 308575 to 309175 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:46,764 DEBUG Processing 958/1146 atomic regions from SNP 287379 to 287979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,814 DEBUG Processing 24/70 atomic regions from SNP 6953 to 7555 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:46,858 DEBUG Processing 71/868 atomic regions from SNP 21055 to 21655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,972 DEBUG Processing 1030/1038 atomic regions from SNP 308875 to 309475 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:47,047 DEBUG Processing 25/70 atomic regions from SNP 7255 to 7857 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:47,063 DEBUG Processing 959/1146 atomic regions from SNP 287679 to 288279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,099 DEBUG Processing 72/868 atomic regions from SNP 21355 to 21955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,271 DEBUG Processing 1031/1038 atomic regions from SNP 309175 to 309775 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:47,282 DEBUG Processing 26/70 atomic regions from SNP 7557 to 8159 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:47,335 DEBUG Processing 73/868 atomic regions from SNP 21655 to 22255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,357 DEBUG Processing 960/1146 atomic regions from SNP 287979 to 288579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,518 DEBUG Processing 27/70 atomic regions from SNP 7859 to 8461 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:47,574 DEBUG Processing 1032/1038 atomic regions from SNP 309475 to 310075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:47,581 DEBUG Processing 74/868 atomic regions from SNP 21955 to 22555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,647 DEBUG Processing 961/1146 atomic regions from SNP 288279 to 288879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,749 DEBUG Processing 28/70 atomic regions from SNP 8161 to 8763 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:47,832 DEBUG Processing 75/868 atomic regions from SNP 22255 to 22855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,867 DEBUG Processing 1033/1038 atomic regions from SNP 309775 to 310375 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:47,953 DEBUG Processing 962/1146 atomic regions from SNP 288579 to 289179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,983 DEBUG Processing 29/70 atomic regions from SNP 8463 to 9065 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:48,079 DEBUG Processing 76/868 atomic regions from SNP 22555 to 23155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,151 DEBUG Processing 1034/1038 atomic regions from SNP 310075 to 310675 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:48,213 DEBUG Processing 30/70 atomic regions from SNP 8765 to 9367 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:48,271 DEBUG Processing 963/1146 atomic regions from SNP 288879 to 289479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,322 DEBUG Processing 77/868 atomic regions from SNP 22855 to 23455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,443 DEBUG Processing 31/70 atomic regions from SNP 9067 to 9669 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:48,449 DEBUG Processing 1035/1038 atomic regions from SNP 310375 to 310975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:48,570 DEBUG Processing 78/868 atomic regions from SNP 23155 to 23755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,584 DEBUG Processing 964/1146 atomic regions from SNP 289179 to 289779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,667 DEBUG Processing 32/70 atomic regions from SNP 9369 to 9971 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:48,751 DEBUG Processing 1036/1038 atomic regions from SNP 310675 to 311275 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:48,817 DEBUG Processing 79/868 atomic regions from SNP 23455 to 24055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,891 DEBUG Processing 33/70 atomic regions from SNP 9671 to 10273 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:48,899 DEBUG Processing 965/1146 atomic regions from SNP 289479 to 290079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,050 DEBUG Processing 1037/1038 atomic regions from SNP 310975 to 311575 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:49,069 DEBUG Processing 80/868 atomic regions from SNP 23755 to 24355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,120 DEBUG Processing 34/70 atomic regions from SNP 9973 to 10575 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:49,222 DEBUG Processing 966/1146 atomic regions from SNP 289779 to 290379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,322 DEBUG Processing 81/868 atomic regions from SNP 24055 to 24655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,343 DEBUG Processing 1038/1038 atomic regions from SNP 311275 to 311875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:49,350 DEBUG Processing 35/70 atomic regions from SNP 10275 to 10877 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:49,500 DEBUG Unique SNPs positions in subchromosome 1: 311876 2025-01-31 09:49:49,541 DEBUG Processing 967/1146 atomic regions from SNP 290079 to 290679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,573 DEBUG Processing 82/868 atomic regions from SNP 24355 to 24955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,581 DEBUG Processing 36/70 atomic regions from SNP 10577 to 11179 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:49,818 DEBUG Processing 83/868 atomic regions from SNP 24655 to 25255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,843 DEBUG Processing 37/70 atomic regions from SNP 10879 to 11481 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:49,856 DEBUG Processing 968/1146 atomic regions from SNP 290379 to 290979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,063 DEBUG Processing 84/868 atomic regions from SNP 24955 to 25555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,101 DEBUG Processing 38/70 atomic regions from SNP 11181 to 11783 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:50,168 DEBUG Processing 969/1146 atomic regions from SNP 290679 to 291279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,330 DEBUG Processing 85/868 atomic regions from SNP 25255 to 25855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,333 DEBUG Processing 39/70 atomic regions from SNP 11483 to 12085 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:50,464 DEBUG Processing 970/1146 atomic regions from SNP 290979 to 291579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,562 DEBUG Processing 40/70 atomic regions from SNP 11785 to 12387 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:50,584 DEBUG Processing 86/868 atomic regions from SNP 25555 to 26155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,744 DEBUG Processing 971/1146 atomic regions from SNP 291279 to 291879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,793 DEBUG Processing 41/70 atomic regions from SNP 12087 to 12689 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:50,827 DEBUG Processing 87/868 atomic regions from SNP 25855 to 26455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,019 DEBUG Processing 42/70 atomic regions from SNP 12389 to 12991 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:51,024 DEBUG Processing 972/1146 atomic regions from SNP 291579 to 292179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,066 DEBUG Processing 88/868 atomic regions from SNP 26155 to 26755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,246 DEBUG Processing 43/70 atomic regions from SNP 12691 to 13293 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:51,304 DEBUG Processing 973/1146 atomic regions from SNP 291879 to 292479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,309 DEBUG Processing 89/868 atomic regions from SNP 26455 to 27055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,470 DEBUG Processing 44/70 atomic regions from SNP 12993 to 13595 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:51,555 DEBUG Processing 90/868 atomic regions from SNP 26755 to 27355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,589 DEBUG Processing 974/1146 atomic regions from SNP 292179 to 292779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,686 DEBUG Processing 45/70 atomic regions from SNP 13295 to 13897 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:51,795 DEBUG Processing 91/868 atomic regions from SNP 27055 to 27655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,887 DEBUG Processing 975/1146 atomic regions from SNP 292479 to 293079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,901 DEBUG Processing 46/70 atomic regions from SNP 13597 to 14199 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:52,032 DEBUG Processing 92/868 atomic regions from SNP 27355 to 27955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,123 DEBUG Processing 47/70 atomic regions from SNP 13899 to 14501 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:52,197 DEBUG Processing 976/1146 atomic regions from SNP 292779 to 293379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,277 DEBUG Processing 93/868 atomic regions from SNP 27655 to 28255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,352 DEBUG Processing 48/70 atomic regions from SNP 14201 to 14803 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:52,502 DEBUG Processing 977/1146 atomic regions from SNP 293079 to 293679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,523 DEBUG Processing 94/868 atomic regions from SNP 27955 to 28555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,603 DEBUG Processing 49/70 atomic regions from SNP 14503 to 15105 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:52,775 DEBUG Processing 95/868 atomic regions from SNP 28255 to 28855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,795 DEBUG Processing 978/1146 atomic regions from SNP 293379 to 293979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,860 DEBUG Processing 50/70 atomic regions from SNP 14805 to 15407 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:53,024 DEBUG Processing 96/868 atomic regions from SNP 28555 to 29155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,098 DEBUG Processing 979/1146 atomic regions from SNP 293679 to 294279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,112 DEBUG Processing 51/70 atomic regions from SNP 15107 to 15709 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:53,263 DEBUG Processing 97/868 atomic regions from SNP 28855 to 29455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,369 DEBUG Processing 52/70 atomic regions from SNP 15409 to 16011 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:53,385 DEBUG Processing 980/1146 atomic regions from SNP 293979 to 294579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,497 DEBUG Processing 98/868 atomic regions from SNP 29155 to 29755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,606 DEBUG Processing 53/70 atomic regions from SNP 15711 to 16313 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:53,668 DEBUG Processing 981/1146 atomic regions from SNP 294279 to 294879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,734 DEBUG Processing 99/868 atomic regions from SNP 29455 to 30055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,830 DEBUG Processing 54/70 atomic regions from SNP 16013 to 16615 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:53,966 DEBUG Processing 982/1146 atomic regions from SNP 294579 to 295179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,981 DEBUG Processing 100/868 atomic regions from SNP 29755 to 30355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,069 DEBUG Processing 55/70 atomic regions from SNP 16315 to 16917 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:54,225 DEBUG Processing 101/868 atomic regions from SNP 30055 to 30655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,264 DEBUG Processing 983/1146 atomic regions from SNP 294879 to 295479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:54,311 DEBUG Processing 56/70 atomic regions from SNP 16617 to 17219 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:54,469 DEBUG Processing 102/868 atomic regions from SNP 30355 to 30955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,541 DEBUG Processing 57/70 atomic regions from SNP 16919 to 17521 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:54,542 DEBUG Processing 984/1146 atomic regions from SNP 295179 to 295779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:54,711 DEBUG Processing 103/868 atomic regions from SNP 30655 to 31255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,768 DEBUG Processing 58/70 atomic regions from SNP 17221 to 17823 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:54,823 DEBUG Processing 985/1146 atomic regions from SNP 295479 to 296079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:54,956 DEBUG Processing 104/868 atomic regions from SNP 30955 to 31555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,993 DEBUG Processing 59/70 atomic regions from SNP 17523 to 18125 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:55,100 DEBUG Processing 986/1146 atomic regions from SNP 295779 to 296379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,198 DEBUG Processing 105/868 atomic regions from SNP 31255 to 31855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,224 DEBUG Processing 60/70 atomic regions from SNP 17825 to 18427 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:55,377 DEBUG Processing 987/1146 atomic regions from SNP 296079 to 296679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,438 DEBUG Processing 106/868 atomic regions from SNP 31555 to 32155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,453 DEBUG Processing 61/70 atomic regions from SNP 18127 to 18729 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:55,653 DEBUG Processing 988/1146 atomic regions from SNP 296379 to 296979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,678 DEBUG Processing 107/868 atomic regions from SNP 31855 to 32455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,682 DEBUG Processing 62/70 atomic regions from SNP 18429 to 19031 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:55,916 DEBUG Processing 63/70 atomic regions from SNP 18731 to 19333 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:55,926 DEBUG Processing 108/868 atomic regions from SNP 32155 to 32755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,938 DEBUG Processing 989/1146 atomic regions from SNP 296679 to 297279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,152 DEBUG Processing 64/70 atomic regions from SNP 19033 to 19635 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:56,176 DEBUG Processing 109/868 atomic regions from SNP 32455 to 33055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,234 DEBUG Processing 990/1146 atomic regions from SNP 296979 to 297579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,410 DEBUG Processing 65/70 atomic regions from SNP 19335 to 19937 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:56,424 DEBUG Processing 110/868 atomic regions from SNP 32755 to 33355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,525 DEBUG Processing 991/1146 atomic regions from SNP 297279 to 297879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,671 DEBUG Processing 111/868 atomic regions from SNP 33055 to 33655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,685 DEBUG Processing 66/70 atomic regions from SNP 19637 to 20239 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:56,814 DEBUG Processing 992/1146 atomic regions from SNP 297579 to 298179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,924 DEBUG Processing 112/868 atomic regions from SNP 33355 to 33955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,958 DEBUG Processing 67/70 atomic regions from SNP 19939 to 20541 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:57,101 DEBUG Processing 993/1146 atomic regions from SNP 297879 to 298479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,181 DEBUG Processing 113/868 atomic regions from SNP 33655 to 34255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,225 DEBUG Processing 68/70 atomic regions from SNP 20241 to 20843 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:57,384 DEBUG Processing 994/1146 atomic regions from SNP 298179 to 298779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,432 DEBUG Processing 114/868 atomic regions from SNP 33955 to 34555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,496 DEBUG Processing 69/70 atomic regions from SNP 20543 to 21145 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:57,681 DEBUG Processing 995/1146 atomic regions from SNP 298479 to 299079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,686 DEBUG Processing 115/868 atomic regions from SNP 34255 to 34855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,763 DEBUG Processing 70/70 atomic regions from SNP 20845 to 21447 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:57,892 DEBUG Unique SNPs positions in subchromosome 1: 21448 2025-01-31 09:49:57,942 DEBUG Subchromosome time: 19.38838322996162, subchromosome SNPs: 21448 2025-01-31 09:49:57,949 DEBUG Processing 116/868 atomic regions from SNP 34555 to 35155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,998 DEBUG Processing 996/1146 atomic regions from SNP 298779 to 299379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,000 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:58,209 DEBUG Processing 117/868 atomic regions from SNP 34855 to 35455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,306 DEBUG Processing 997/1146 atomic regions from SNP 299079 to 299679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,464 DEBUG Processing 118/868 atomic regions from SNP 35155 to 35755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,632 DEBUG Processing 998/1146 atomic regions from SNP 299379 to 299979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,717 DEBUG Processing 119/868 atomic regions from SNP 35455 to 36055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,955 DEBUG Processing 999/1146 atomic regions from SNP 299679 to 300279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,958 DEBUG Processing 120/868 atomic regions from SNP 35755 to 36355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,203 DEBUG Processing 121/868 atomic regions from SNP 36055 to 36655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,280 DEBUG Processing 1000/1146 atomic regions from SNP 299979 to 300579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,446 DEBUG Processing 122/868 atomic regions from SNP 36355 to 36955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,604 DEBUG Processing 1001/1146 atomic regions from SNP 300279 to 300879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,690 DEBUG Processing 123/868 atomic regions from SNP 36655 to 37255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,917 DEBUG Processing 1002/1146 atomic regions from SNP 300579 to 301179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,936 DEBUG Processing 124/868 atomic regions from SNP 36955 to 37555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,189 DEBUG Processing 125/868 atomic regions from SNP 37255 to 37855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,208 DEBUG Processing 1003/1146 atomic regions from SNP 300879 to 301479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:00,436 DEBUG Processing 126/868 atomic regions from SNP 37555 to 38155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,501 DEBUG Processing 1004/1146 atomic regions from SNP 301179 to 301779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:00,682 DEBUG Processing 127/868 atomic regions from SNP 37855 to 38455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,827 DEBUG Processing 1005/1146 atomic regions from SNP 301479 to 302079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:00,950 DEBUG Processing 128/868 atomic regions from SNP 38155 to 38755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,197 DEBUG Processing 129/868 atomic regions from SNP 38455 to 39055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,236 DEBUG Processing 1006/1146 atomic regions from SNP 301779 to 302379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:01,441 DEBUG Processing 130/868 atomic regions from SNP 38755 to 39355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,549 DEBUG Processing 1007/1146 atomic regions from SNP 302079 to 302679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:01,696 DEBUG Processing 131/868 atomic regions from SNP 39055 to 39655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,850 DEBUG Processing 1008/1146 atomic regions from SNP 302379 to 302979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:01,940 DEBUG Processing 132/868 atomic regions from SNP 39355 to 39955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,131 DEBUG Processing 1009/1146 atomic regions from SNP 302679 to 303279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:02,191 DEBUG Processing 133/868 atomic regions from SNP 39655 to 40255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,426 DEBUG Processing 1010/1146 atomic regions from SNP 302979 to 303579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:02,445 DEBUG Processing 134/868 atomic regions from SNP 39955 to 40555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,695 DEBUG Processing 135/868 atomic regions from SNP 40255 to 40855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,715 DEBUG Processing 1011/1146 atomic regions from SNP 303279 to 303879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:02,945 DEBUG Processing 136/868 atomic regions from SNP 40555 to 41155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,011 DEBUG Processing 1012/1146 atomic regions from SNP 303579 to 304179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:03,194 DEBUG Processing 137/868 atomic regions from SNP 40855 to 41455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,303 DEBUG Processing 1013/1146 atomic regions from SNP 303879 to 304479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:03,387 DEBUG Segmenting atomic regions: 2025-01-31 09:50:03,437 DEBUG Processing 138/868 atomic regions from SNP 41155 to 41755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,485 DEBUG Processing 1/759 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,589 DEBUG Processing 1014/1146 atomic regions from SNP 304179 to 304779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:03,687 DEBUG Processing 139/868 atomic regions from SNP 41455 to 42055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,715 DEBUG Processing 2/759 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,881 DEBUG Processing 1015/1146 atomic regions from SNP 304479 to 305079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:03,944 DEBUG Processing 140/868 atomic regions from SNP 41755 to 42355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,944 DEBUG Processing 3/759 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,175 DEBUG Processing 4/759 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,176 DEBUG Processing 1016/1146 atomic regions from SNP 304779 to 305379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:04,213 DEBUG Processing 141/868 atomic regions from SNP 42055 to 42655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,405 DEBUG Processing 5/759 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,477 DEBUG Processing 142/868 atomic regions from SNP 42355 to 42955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,489 DEBUG Processing 1017/1146 atomic regions from SNP 305079 to 305679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:04,649 DEBUG Processing 6/759 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,745 DEBUG Processing 143/868 atomic regions from SNP 42655 to 43255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,792 DEBUG Processing 1018/1146 atomic regions from SNP 305379 to 305979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:04,881 DEBUG Processing 7/759 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,006 DEBUG Processing 144/868 atomic regions from SNP 42955 to 43555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,088 DEBUG Processing 1019/1146 atomic regions from SNP 305679 to 306279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:05,123 DEBUG Processing 8/759 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,268 DEBUG Processing 145/868 atomic regions from SNP 43255 to 43855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,369 DEBUG Processing 9/759 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,379 DEBUG Processing 1020/1146 atomic regions from SNP 305979 to 306579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:05,526 DEBUG Processing 146/868 atomic regions from SNP 43555 to 44155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,596 DEBUG Processing 10/759 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,666 DEBUG Processing 1021/1146 atomic regions from SNP 306279 to 306879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:05,805 DEBUG Processing 147/868 atomic regions from SNP 43855 to 44455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,826 DEBUG Processing 11/759 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,955 DEBUG Processing 1022/1146 atomic regions from SNP 306579 to 307179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:06,055 DEBUG Processing 12/759 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,083 DEBUG Processing 148/868 atomic regions from SNP 44155 to 44755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,251 DEBUG Processing 1023/1146 atomic regions from SNP 306879 to 307479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:06,296 DEBUG Processing 13/759 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,353 DEBUG Processing 149/868 atomic regions from SNP 44455 to 45055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,538 DEBUG Processing 14/759 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,541 DEBUG Processing 1024/1146 atomic regions from SNP 307179 to 307779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:06,627 DEBUG Processing 150/868 atomic regions from SNP 44755 to 45355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,768 DEBUG Processing 15/759 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,840 DEBUG Processing 1025/1146 atomic regions from SNP 307479 to 308079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:06,902 DEBUG Processing 151/868 atomic regions from SNP 45055 to 45655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,996 DEBUG Processing 16/759 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,152 DEBUG Processing 1026/1146 atomic regions from SNP 307779 to 308379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:07,183 DEBUG Processing 152/868 atomic regions from SNP 45355 to 45955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,254 DEBUG Processing 17/759 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,456 DEBUG Processing 1027/1146 atomic regions from SNP 308079 to 308679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:07,458 DEBUG Processing 153/868 atomic regions from SNP 45655 to 46255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,496 DEBUG Processing 18/759 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,725 DEBUG Processing 19/759 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,731 DEBUG Processing 154/868 atomic regions from SNP 45955 to 46555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,752 DEBUG Processing 1028/1146 atomic regions from SNP 308379 to 308979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:07,950 DEBUG Processing 20/759 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,002 DEBUG Processing 155/868 atomic regions from SNP 46255 to 46855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,046 DEBUG Processing 1029/1146 atomic regions from SNP 308679 to 309279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:08,178 DEBUG Processing 21/759 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,278 DEBUG Processing 156/868 atomic regions from SNP 46555 to 47155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,346 DEBUG Processing 1030/1146 atomic regions from SNP 308979 to 309579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:08,400 DEBUG Processing 22/759 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,547 DEBUG Processing 157/868 atomic regions from SNP 46855 to 47455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,622 DEBUG Processing 23/759 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,645 DEBUG Processing 1031/1146 atomic regions from SNP 309279 to 309879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:08,823 DEBUG Processing 158/868 atomic regions from SNP 47155 to 47755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,850 DEBUG Processing 24/759 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,937 DEBUG Processing 1032/1146 atomic regions from SNP 309579 to 310179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:09,070 DEBUG Processing 25/759 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,111 DEBUG Processing 159/868 atomic regions from SNP 47455 to 48055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,230 DEBUG Processing 1033/1146 atomic regions from SNP 309879 to 310479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:09,292 DEBUG Processing 26/759 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,390 DEBUG Processing 160/868 atomic regions from SNP 47755 to 48355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,533 DEBUG Processing 27/759 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,536 DEBUG Processing 1034/1146 atomic regions from SNP 310179 to 310779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:09,660 DEBUG Processing 161/868 atomic regions from SNP 48055 to 48655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,762 DEBUG Processing 28/759 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,818 DEBUG Processing 1035/1146 atomic regions from SNP 310479 to 311079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:09,928 DEBUG Processing 162/868 atomic regions from SNP 48355 to 48955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,987 DEBUG Processing 29/759 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,114 DEBUG Processing 1036/1146 atomic regions from SNP 310779 to 311379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:10,183 DEBUG Processing 163/868 atomic regions from SNP 48655 to 49255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,216 DEBUG Processing 30/759 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,420 DEBUG Processing 1037/1146 atomic regions from SNP 311079 to 311679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:10,442 DEBUG Processing 31/759 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,461 DEBUG Processing 164/868 atomic regions from SNP 48955 to 49555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,667 DEBUG Processing 32/759 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,724 DEBUG Processing 1038/1146 atomic regions from SNP 311379 to 311979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:10,734 DEBUG Processing 165/868 atomic regions from SNP 49255 to 49855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,892 DEBUG Processing 33/759 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,991 DEBUG Processing 166/868 atomic regions from SNP 49555 to 50155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,028 DEBUG Processing 1039/1146 atomic regions from SNP 311679 to 312279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:11,113 DEBUG Processing 34/759 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,262 DEBUG Processing 167/868 atomic regions from SNP 49855 to 50455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,321 DEBUG Processing 1040/1146 atomic regions from SNP 311979 to 312579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:11,331 DEBUG Processing 35/759 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,399 DEBUG Subchromosome time: 356.5724800460739, subchromosome SNPs: 311876 2025-01-31 09:50:11,402 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:11,521 DEBUG Processing 168/868 atomic regions from SNP 50155 to 50755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,551 DEBUG Processing 36/759 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,629 DEBUG Processing 1041/1146 atomic regions from SNP 312279 to 312879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:11,765 DEBUG Processing 37/759 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,770 DEBUG Processing 169/868 atomic regions from SNP 50455 to 51055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,957 DEBUG Processing 1042/1146 atomic regions from SNP 312579 to 313179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:11,982 DEBUG Processing 38/759 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,018 DEBUG Processing 170/868 atomic regions from SNP 50755 to 51355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,206 DEBUG Processing 39/759 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,277 DEBUG Processing 1043/1146 atomic regions from SNP 312879 to 313479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:12,288 DEBUG Processing 171/868 atomic regions from SNP 51055 to 51655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,362 DEBUG Segmenting atomic regions: 2025-01-31 09:50:12,426 DEBUG Processing 40/759 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,503 DEBUG Processing 1/25 atomic regions from SNP 0 to 605 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:12,560 DEBUG Processing 172/868 atomic regions from SNP 51355 to 51955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,594 DEBUG Processing 1044/1146 atomic regions from SNP 313179 to 313779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:12,637 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:50:12,645 DEBUG Processing 41/759 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,777 DEBUG Processing 2/25 atomic regions from SNP 305 to 910 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:12,839 DEBUG Processing 173/868 atomic regions from SNP 51655 to 52255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,873 DEBUG Processing 42/759 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,912 DEBUG Processing 1045/1146 atomic regions from SNP 313479 to 314079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:13,075 DEBUG Processing 3/25 atomic regions from SNP 610 to 1215 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:13,099 DEBUG Processing 43/759 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,108 DEBUG Processing 174/868 atomic regions from SNP 51955 to 52555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,222 DEBUG Processing 1046/1146 atomic regions from SNP 313779 to 314379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:13,325 DEBUG Processing 44/759 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,364 DEBUG Processing 175/868 atomic regions from SNP 52255 to 52855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,384 DEBUG Processing 4/25 atomic regions from SNP 915 to 1520 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:13,528 DEBUG Processing 1047/1146 atomic regions from SNP 314079 to 314679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:13,550 DEBUG Processing 45/759 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,618 DEBUG Processing 176/868 atomic regions from SNP 52555 to 53155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,691 DEBUG Processing 5/25 atomic regions from SNP 1220 to 1825 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:13,780 DEBUG Processing 46/759 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,834 DEBUG Processing 1048/1146 atomic regions from SNP 314379 to 314979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:13,876 DEBUG Processing 177/868 atomic regions from SNP 52855 to 53455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,991 DEBUG Processing 6/25 atomic regions from SNP 1525 to 2130 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:14,000 DEBUG Processing 47/759 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,128 DEBUG Processing 178/868 atomic regions from SNP 53155 to 53755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,143 DEBUG Processing 1049/1146 atomic regions from SNP 314679 to 315279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:14,219 DEBUG Processing 48/759 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,289 DEBUG Processing 7/25 atomic regions from SNP 1830 to 2435 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:14,381 DEBUG Processing 179/868 atomic regions from SNP 53455 to 54055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,439 DEBUG Processing 49/759 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,470 DEBUG Processing 1050/1146 atomic regions from SNP 314979 to 315579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:14,588 DEBUG Processing 8/25 atomic regions from SNP 2135 to 2740 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:14,631 DEBUG Processing 180/868 atomic regions from SNP 53755 to 54355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,654 DEBUG Processing 50/759 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,788 DEBUG Processing 1051/1146 atomic regions from SNP 315279 to 315879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:14,874 DEBUG Processing 51/759 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,883 DEBUG Processing 181/868 atomic regions from SNP 54055 to 54655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,887 DEBUG Processing 9/25 atomic regions from SNP 2440 to 3045 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:15,098 DEBUG Processing 52/759 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,102 DEBUG Processing 1052/1146 atomic regions from SNP 315579 to 316179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:15,156 DEBUG Processing 182/868 atomic regions from SNP 54355 to 54955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,195 DEBUG Processing 10/25 atomic regions from SNP 2745 to 3350 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:15,321 DEBUG Processing 53/759 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,408 DEBUG Processing 1053/1146 atomic regions from SNP 315879 to 316479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:15,426 DEBUG Processing 183/868 atomic regions from SNP 54655 to 55255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,499 DEBUG Processing 11/25 atomic regions from SNP 3050 to 3655 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:15,544 DEBUG Processing 54/759 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,699 DEBUG Processing 184/868 atomic regions from SNP 54955 to 55555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,738 DEBUG Processing 1054/1146 atomic regions from SNP 316179 to 316779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:15,767 DEBUG Processing 55/759 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,802 DEBUG Processing 12/25 atomic regions from SNP 3355 to 3960 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:15,968 DEBUG Processing 185/868 atomic regions from SNP 55255 to 55855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,997 DEBUG Processing 56/759 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,070 DEBUG Processing 1055/1146 atomic regions from SNP 316479 to 317079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:16,118 DEBUG Processing 13/25 atomic regions from SNP 3660 to 4265 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:16,222 DEBUG Processing 186/868 atomic regions from SNP 55555 to 56155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,223 DEBUG Processing 57/759 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,396 DEBUG Processing 1056/1146 atomic regions from SNP 316779 to 317379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:16,443 DEBUG Processing 14/25 atomic regions from SNP 3965 to 4570 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:16,464 DEBUG Processing 58/759 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,488 DEBUG Processing 187/868 atomic regions from SNP 55855 to 56455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,714 DEBUG Processing 59/759 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,721 DEBUG Processing 1057/1146 atomic regions from SNP 317079 to 317679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:16,758 DEBUG Processing 188/868 atomic regions from SNP 56155 to 56755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,765 DEBUG Processing 15/25 atomic regions from SNP 4270 to 4875 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:16,946 DEBUG Processing 60/759 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,023 DEBUG Processing 189/868 atomic regions from SNP 56455 to 57055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,048 DEBUG Processing 1058/1146 atomic regions from SNP 317379 to 317979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:17,088 DEBUG Processing 16/25 atomic regions from SNP 4575 to 5180 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:17,174 DEBUG Processing 61/759 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,301 DEBUG Processing 190/868 atomic regions from SNP 56755 to 57355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,383 DEBUG Processing 1059/1146 atomic regions from SNP 317679 to 318279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:17,412 DEBUG Processing 62/759 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,417 DEBUG Processing 17/25 atomic regions from SNP 4880 to 5485 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:17,563 DEBUG Processing 191/868 atomic regions from SNP 57055 to 57655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,634 DEBUG Processing 63/759 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,705 DEBUG Processing 1060/1146 atomic regions from SNP 317979 to 318579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:17,737 DEBUG Processing 18/25 atomic regions from SNP 5185 to 5790 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:17,805 DEBUG Processing 192/868 atomic regions from SNP 57355 to 57955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,857 DEBUG Processing 64/759 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,031 DEBUG Processing 1061/1146 atomic regions from SNP 318279 to 318879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:18,053 DEBUG Processing 193/868 atomic regions from SNP 57655 to 58255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,060 DEBUG Processing 19/25 atomic regions from SNP 5490 to 6095 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:18,104 DEBUG Processing 65/759 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,310 DEBUG Processing 194/868 atomic regions from SNP 57955 to 58555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,353 DEBUG Processing 1062/1146 atomic regions from SNP 318579 to 319179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:18,355 DEBUG Processing 66/759 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,387 DEBUG Processing 20/25 atomic regions from SNP 5795 to 6400 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:18,557 DEBUG Processing 195/868 atomic regions from SNP 58255 to 58855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,586 DEBUG Processing 67/759 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,656 DEBUG Processing 1063/1146 atomic regions from SNP 318879 to 319479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:18,712 DEBUG Processing 21/25 atomic regions from SNP 6100 to 6705 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:18,798 DEBUG Processing 196/868 atomic regions from SNP 58555 to 59155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,815 DEBUG Processing 68/759 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,969 DEBUG Processing 1064/1146 atomic regions from SNP 319179 to 319779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:19,028 DEBUG Processing 22/25 atomic regions from SNP 6405 to 7010 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:19,041 DEBUG Processing 197/868 atomic regions from SNP 58855 to 59455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,041 DEBUG Processing 69/759 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,267 DEBUG Processing 1065/1146 atomic regions from SNP 319479 to 320079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:19,268 DEBUG Processing 70/759 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,285 DEBUG Processing 198/868 atomic regions from SNP 59155 to 59755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,343 DEBUG Processing 23/25 atomic regions from SNP 6710 to 7315 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:19,486 DEBUG Processing 71/759 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,526 DEBUG Processing 199/868 atomic regions from SNP 59455 to 60055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,575 DEBUG Processing 1066/1146 atomic regions from SNP 319779 to 320379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:19,666 DEBUG Processing 24/25 atomic regions from SNP 7015 to 7619 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:19,699 DEBUG Processing 72/759 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,760 DEBUG Processing 200/868 atomic regions from SNP 59755 to 60355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,885 DEBUG Processing 1067/1146 atomic regions from SNP 320079 to 320679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:19,915 DEBUG Processing 73/759 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,986 DEBUG Processing 25/25 atomic regions from SNP 7319 to 7923 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:19,994 DEBUG Processing 201/868 atomic regions from SNP 60055 to 60655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,133 DEBUG Processing 74/759 atomic regions from SNP 21973 to 22574 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,157 DEBUG Unique SNPs positions in subchromosome 2: 7924 2025-01-31 09:50:20,168 DEBUG Subchromosome time: 8.765932768001221, subchromosome SNPs: 7924 2025-01-31 09:50:20,168 DEBUG Estimated BADs: [3.26, 6.52, 3.26, 0.81, 1.63, 3.26, 1.63, 6.52, 0.81, 3.26, 6.52, 0.81, 3.26, 1.63, 6.52, 1.09, 3.26, 6.52, 3.26, 1.63, 3.26, 6.52, 3.26, 6.52, 3.26, 6.52, 9.77] SNP counts: [38885, 21969, 5797, 6221, 44097, 24747, 6007, 1337, 7197, 1814, 7800, 9230, 12974, 19377, 8200, 1219, 6639, 7261, 11588, 6914, 19590, 9812, 10811, 8990, 13400, 4065, 3859] SNP IDs counts: [38885, 21969, 5797, 6221, 44097, 24747, 6007, 1337, 7197, 1814, 7800, 9230, 12974, 19377, 8200, 1219, 6639, 7261, 11588, 6914, 19590, 9812, 10811, 8990, 13400, 4065, 3859] Critical gap: 721019bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 24.92Mbp, 36.47Mbp, 39.71Mbp, 43.23Mbp, 67.78Mbp, 81.02Mbp, 84.65Mbp, 85.38Mbp, 89.64Mbp, 90.88Mbp, 94.98Mbp, 100.50Mbp, 107.77Mbp, 118.63Mbp, 123.02Mbp, 123.70Mbp, 127.30Mbp, 131.13Mbp, 137.43Mbp, 141.27Mbp, 152.31Mbp, 157.49Mbp, 163.25Mbp, 168.00Mbp, 175.18Mbp[1.52Mbp], 179.97Mbp, 182.11Mbp] 2025-01-31 09:50:20,168 DEBUG chr2 time: 8.766533368034288 s 2025-01-31 09:50:20,195 DEBUG Processing 1068/1146 atomic regions from SNP 320379 to 320979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:20,238 DEBUG Processing 202/868 atomic regions from SNP 60355 to 60955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,350 DEBUG chr2: Fitting background model for 27 segments 2025-01-31 09:50:20,353 DEBUG Processing 75/759 atomic regions from SNP 22274 to 22875 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,484 DEBUG Processing 203/868 atomic regions from SNP 60655 to 61255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,501 DEBUG Processing 1069/1146 atomic regions from SNP 320679 to 321279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:20,576 DEBUG Processing 76/759 atomic regions from SNP 22575 to 23176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,737 DEBUG Processing 204/868 atomic regions from SNP 60955 to 61555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,796 DEBUG Processing 77/759 atomic regions from SNP 22876 to 23477 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,806 DEBUG Processing 1070/1146 atomic regions from SNP 320979 to 321579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:20,993 DEBUG Processing 205/868 atomic regions from SNP 61255 to 61855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,019 DEBUG Processing 78/759 atomic regions from SNP 23177 to 23778 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,108 DEBUG Processing 1071/1146 atomic regions from SNP 321279 to 321879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:21,242 DEBUG Processing 79/759 atomic regions from SNP 23478 to 24079 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,248 DEBUG Processing 206/868 atomic regions from SNP 61555 to 62155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,409 DEBUG Processing 1072/1146 atomic regions from SNP 321579 to 322179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:21,467 DEBUG Processing 80/759 atomic regions from SNP 23779 to 24380 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,511 DEBUG Processing 207/868 atomic regions from SNP 61855 to 62455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,692 DEBUG Processing 81/759 atomic regions from SNP 24080 to 24681 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,725 DEBUG Processing 1073/1146 atomic regions from SNP 321879 to 322479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:21,771 DEBUG Processing 208/868 atomic regions from SNP 62155 to 62755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,915 DEBUG Processing 82/759 atomic regions from SNP 24381 to 24982 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,031 DEBUG Processing 1074/1146 atomic regions from SNP 322179 to 322779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:22,033 DEBUG Processing 209/868 atomic regions from SNP 62455 to 63055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,136 DEBUG Processing 83/759 atomic regions from SNP 24682 to 25283 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,303 DEBUG Processing 210/868 atomic regions from SNP 62755 to 63355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,318 DEBUG Processing 1075/1146 atomic regions from SNP 322479 to 323079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:22,363 DEBUG Processing 84/759 atomic regions from SNP 24983 to 25584 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,581 DEBUG Processing 211/868 atomic regions from SNP 63055 to 63655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,589 DEBUG Processing 85/759 atomic regions from SNP 25284 to 25885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,615 DEBUG Processing 1076/1146 atomic regions from SNP 322779 to 323379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:22,810 DEBUG Processing 86/759 atomic regions from SNP 25585 to 26186 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,866 DEBUG Processing 212/868 atomic regions from SNP 63355 to 63955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,916 DEBUG Processing 1077/1146 atomic regions from SNP 323079 to 323679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:23,030 DEBUG Processing 87/759 atomic regions from SNP 25886 to 26487 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,147 DEBUG Processing 213/868 atomic regions from SNP 63655 to 64255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,216 DEBUG Processing 1078/1146 atomic regions from SNP 323379 to 323979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:23,251 DEBUG Processing 88/759 atomic regions from SNP 26187 to 26788 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,422 DEBUG Processing 214/868 atomic regions from SNP 63955 to 64555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,474 DEBUG Processing 89/759 atomic regions from SNP 26488 to 27089 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,508 DEBUG Processing 1079/1146 atomic regions from SNP 323679 to 324279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:23,695 DEBUG Processing 90/759 atomic regions from SNP 26789 to 27390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,701 DEBUG Processing 215/868 atomic regions from SNP 64255 to 64855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,799 DEBUG Processing 1080/1146 atomic regions from SNP 323979 to 324579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:23,929 DEBUG Processing 91/759 atomic regions from SNP 27090 to 27691 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,974 DEBUG Processing 216/868 atomic regions from SNP 64555 to 65155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,109 DEBUG Processing 1081/1146 atomic regions from SNP 324279 to 324879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:24,163 DEBUG Processing 92/759 atomic regions from SNP 27391 to 27992 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,228 DEBUG Processing 217/868 atomic regions from SNP 64855 to 65455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,262 DEBUG Segmenting atomic regions: 2025-01-31 09:50:24,366 DEBUG Processing 1/716 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,396 DEBUG Processing 93/759 atomic regions from SNP 27692 to 28293 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,431 DEBUG Processing 1082/1146 atomic regions from SNP 324579 to 325179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:24,476 DEBUG Processing 218/868 atomic regions from SNP 65155 to 65755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,596 DEBUG Processing 2/716 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,629 DEBUG Processing 94/759 atomic regions from SNP 27993 to 28594 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,733 DEBUG Processing 219/868 atomic regions from SNP 65455 to 66055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,755 DEBUG Processing 1083/1146 atomic regions from SNP 324879 to 325479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:24,823 DEBUG Processing 3/716 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,857 DEBUG Processing 95/759 atomic regions from SNP 28294 to 28895 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,987 DEBUG Processing 220/868 atomic regions from SNP 65755 to 66355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,054 DEBUG Processing 4/716 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,071 DEBUG Processing 1084/1146 atomic regions from SNP 325179 to 325779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:25,086 DEBUG Processing 96/759 atomic regions from SNP 28595 to 29196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,247 DEBUG Processing 221/868 atomic regions from SNP 66055 to 66655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,280 DEBUG Processing 5/716 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,315 DEBUG Processing 97/759 atomic regions from SNP 28896 to 29497 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,399 DEBUG Processing 1085/1146 atomic regions from SNP 325479 to 326079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:25,506 DEBUG Processing 222/868 atomic regions from SNP 66355 to 66955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,512 DEBUG Processing 6/716 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,549 DEBUG Processing 98/759 atomic regions from SNP 29197 to 29798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,729 DEBUG Processing 1086/1146 atomic regions from SNP 325779 to 326379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:25,758 DEBUG Processing 223/868 atomic regions from SNP 66655 to 67255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,771 DEBUG Processing 7/716 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,783 DEBUG Processing 99/759 atomic regions from SNP 29498 to 30099 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,012 DEBUG Processing 224/868 atomic regions from SNP 66955 to 67555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,025 DEBUG Processing 100/759 atomic regions from SNP 29799 to 30400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,027 DEBUG Processing 8/716 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,052 DEBUG Processing 1087/1146 atomic regions from SNP 326079 to 326679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:26,267 DEBUG Processing 225/868 atomic regions from SNP 67255 to 67855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,275 DEBUG Processing 9/716 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,277 DEBUG Processing 101/759 atomic regions from SNP 30100 to 30701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,386 DEBUG Processing 1088/1146 atomic regions from SNP 326379 to 326979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:26,518 DEBUG Processing 226/868 atomic regions from SNP 67555 to 68155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,537 DEBUG Processing 10/716 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,537 DEBUG Processing 102/759 atomic regions from SNP 30401 to 31002 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,696 DEBUG Processing 1089/1146 atomic regions from SNP 326679 to 327279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:26,759 DEBUG Processing 227/868 atomic regions from SNP 67855 to 68455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,792 DEBUG Processing 103/759 atomic regions from SNP 30702 to 31303 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,794 DEBUG Processing 11/716 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,990 DEBUG Processing 1090/1146 atomic regions from SNP 326979 to 327579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:27,006 DEBUG Processing 228/868 atomic regions from SNP 68155 to 68755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,033 DEBUG Processing 104/759 atomic regions from SNP 31003 to 31604 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,059 DEBUG Processing 12/716 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,261 DEBUG Processing 229/868 atomic regions from SNP 68455 to 69055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,268 DEBUG Processing 105/759 atomic regions from SNP 31304 to 31905 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,284 DEBUG Processing 1091/1146 atomic regions from SNP 327279 to 327879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:27,323 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:50:27,325 DEBUG chr8: Signal quantile: 0.995. signal threshold: 22. Best RMSEA: 0.041 2025-01-31 09:50:27,328 DEBUG Processing 13/716 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,510 DEBUG Processing 106/759 atomic regions from SNP 31605 to 32206 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,523 DEBUG Processing 230/868 atomic regions from SNP 68755 to 69355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,585 DEBUG Processing 14/716 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,589 DEBUG Processing 1092/1146 atomic regions from SNP 327579 to 328179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:27,772 DEBUG Processing 107/759 atomic regions from SNP 31906 to 32507 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,779 DEBUG Processing 231/868 atomic regions from SNP 69055 to 69655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,853 DEBUG Processing 15/716 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,896 DEBUG Processing 1093/1146 atomic regions from SNP 327879 to 328479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:28,019 DEBUG Processing 108/759 atomic regions from SNP 32207 to 32808 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,060 DEBUG Processing 232/868 atomic regions from SNP 69355 to 69955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,097 DEBUG Processing 16/716 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,214 DEBUG Processing 1094/1146 atomic regions from SNP 328179 to 328779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:28,264 DEBUG Processing 109/759 atomic regions from SNP 32508 to 33109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,322 DEBUG Processing 233/868 atomic regions from SNP 69655 to 70255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,337 DEBUG Processing 17/716 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,516 DEBUG Processing 110/759 atomic regions from SNP 32809 to 33410 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,525 DEBUG Processing 1095/1146 atomic regions from SNP 328479 to 329079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:28,571 DEBUG Processing 18/716 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,584 DEBUG Processing 234/868 atomic regions from SNP 69955 to 70555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,759 DEBUG Processing 111/759 atomic regions from SNP 33110 to 33711 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,809 DEBUG Processing 19/716 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,837 DEBUG Processing 1096/1146 atomic regions from SNP 328779 to 329379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:28,848 DEBUG Processing 235/868 atomic regions from SNP 70255 to 70855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,994 DEBUG Processing 112/759 atomic regions from SNP 33411 to 34012 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,048 DEBUG Processing 20/716 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,113 DEBUG Processing 236/868 atomic regions from SNP 70555 to 71155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,144 DEBUG Processing 1097/1146 atomic regions from SNP 329079 to 329679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:29,221 DEBUG Processing 113/759 atomic regions from SNP 33712 to 34313 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,282 DEBUG Processing 21/716 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,375 DEBUG Processing 237/868 atomic regions from SNP 70855 to 71455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,441 DEBUG Processing 1098/1146 atomic regions from SNP 329379 to 329979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:29,443 DEBUG Processing 114/759 atomic regions from SNP 34013 to 34614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,530 DEBUG Processing 22/716 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,636 DEBUG Processing 238/868 atomic regions from SNP 71155 to 71755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,667 DEBUG Processing 115/759 atomic regions from SNP 34314 to 34915 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,702 DEBUG chr8 total SNP count: 224042 2025-01-31 09:50:29,702 DEBUG chr8 length: 129401213 2025-01-31 09:50:29,702 DEBUG ----------------------------------------- 2025-01-31 09:50:29,702 INFO Processing SNPs in chr8 2025-01-31 09:50:29,740 DEBUG Processing 1099/1146 atomic regions from SNP 329679 to 330279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:29,794 DEBUG Processing 23/716 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,889 DEBUG Processing 116/759 atomic regions from SNP 34615 to 35216 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,893 DEBUG Processing 239/868 atomic regions from SNP 71455 to 72055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,918 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 224042)] 2025-01-31 09:50:30,041 DEBUG Processing 1100/1146 atomic regions from SNP 329979 to 330579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:30,054 DEBUG Processing 24/716 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,070 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:30,117 DEBUG Processing 117/759 atomic regions from SNP 34916 to 35517 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,153 DEBUG Processing 240/868 atomic regions from SNP 71755 to 72355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,318 DEBUG Processing 25/716 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,344 DEBUG Processing 1101/1146 atomic regions from SNP 330279 to 330879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:30,348 DEBUG Processing 118/759 atomic regions from SNP 35217 to 35818 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,416 DEBUG Processing 241/868 atomic regions from SNP 72055 to 72655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,566 DEBUG Processing 26/716 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,574 DEBUG Processing 119/759 atomic regions from SNP 35518 to 36119 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,639 DEBUG Processing 1102/1146 atomic regions from SNP 330579 to 331179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:30,680 DEBUG Processing 242/868 atomic regions from SNP 72355 to 72955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,793 DEBUG Processing 27/716 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,797 DEBUG Processing 120/759 atomic regions from SNP 35819 to 36420 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,942 DEBUG Processing 1103/1146 atomic regions from SNP 330879 to 331479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:30,945 DEBUG Processing 243/868 atomic regions from SNP 72655 to 73255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,022 DEBUG Processing 121/759 atomic regions from SNP 36120 to 36721 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,037 DEBUG Processing 28/716 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,209 DEBUG Processing 244/868 atomic regions from SNP 72955 to 73555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,248 DEBUG Processing 1104/1146 atomic regions from SNP 331179 to 331779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:31,254 DEBUG Processing 122/759 atomic regions from SNP 36421 to 37022 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,300 DEBUG Processing 29/716 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,477 DEBUG Processing 245/868 atomic regions from SNP 73255 to 73855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,499 DEBUG Processing 123/759 atomic regions from SNP 36722 to 37323 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,556 DEBUG Processing 1105/1146 atomic regions from SNP 331479 to 332079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:31,558 DEBUG Processing 30/716 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,731 DEBUG Processing 124/759 atomic regions from SNP 37023 to 37624 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,740 DEBUG Processing 246/868 atomic regions from SNP 73555 to 74155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,807 DEBUG Processing 31/716 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,852 DEBUG Processing 1106/1146 atomic regions from SNP 331779 to 332379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:31,962 DEBUG Processing 125/759 atomic regions from SNP 37324 to 37925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,005 DEBUG Processing 247/868 atomic regions from SNP 73855 to 74455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,068 DEBUG Processing 32/716 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,148 DEBUG Processing 1107/1146 atomic regions from SNP 332079 to 332679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:32,184 DEBUG Processing 126/759 atomic regions from SNP 37625 to 38226 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,262 DEBUG Processing 248/868 atomic regions from SNP 74155 to 74755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,335 DEBUG Processing 33/716 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,408 DEBUG Processing 127/759 atomic regions from SNP 37926 to 38527 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,457 DEBUG Processing 1108/1146 atomic regions from SNP 332379 to 332979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:32,518 DEBUG Processing 249/868 atomic regions from SNP 74455 to 75055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,591 DEBUG Processing 34/716 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,644 DEBUG Processing 128/759 atomic regions from SNP 38227 to 38828 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,765 DEBUG Processing 1109/1146 atomic regions from SNP 332679 to 333279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:32,781 DEBUG Processing 250/868 atomic regions from SNP 74755 to 75355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,848 DEBUG Processing 35/716 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,879 DEBUG Processing 129/759 atomic regions from SNP 38528 to 39129 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,045 DEBUG Processing 251/868 atomic regions from SNP 75055 to 75655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,067 DEBUG Processing 1110/1146 atomic regions from SNP 332979 to 333579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:33,099 DEBUG Processing 130/759 atomic regions from SNP 38829 to 39430 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,100 DEBUG Processing 36/716 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,308 DEBUG Processing 252/868 atomic regions from SNP 75355 to 75955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,325 DEBUG Processing 131/759 atomic regions from SNP 39130 to 39731 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,339 DEBUG Processing 37/716 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,377 DEBUG Processing 1111/1146 atomic regions from SNP 333279 to 333879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:33,551 DEBUG Processing 132/759 atomic regions from SNP 39431 to 40032 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,569 DEBUG Processing 38/716 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,572 DEBUG Processing 253/868 atomic regions from SNP 75655 to 76255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,688 DEBUG Processing 1112/1146 atomic regions from SNP 333579 to 334179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:33,770 DEBUG Processing 133/759 atomic regions from SNP 39732 to 40333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,803 DEBUG Processing 39/716 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,836 DEBUG Processing 254/868 atomic regions from SNP 75955 to 76555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,984 DEBUG Processing 134/759 atomic regions from SNP 40033 to 40634 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,000 DEBUG Processing 1113/1146 atomic regions from SNP 333879 to 334479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:34,041 DEBUG Processing 40/716 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,095 DEBUG Processing 255/868 atomic regions from SNP 76255 to 76855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,196 DEBUG Processing 135/759 atomic regions from SNP 40334 to 40935 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,292 DEBUG Processing 41/716 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,316 DEBUG Processing 1114/1146 atomic regions from SNP 334179 to 334779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:34,359 DEBUG Processing 256/868 atomic regions from SNP 76555 to 77155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,409 DEBUG Processing 136/759 atomic regions from SNP 40635 to 41236 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,543 DEBUG Processing 42/716 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,623 DEBUG Processing 257/868 atomic regions from SNP 76855 to 77455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,626 DEBUG Processing 137/759 atomic regions from SNP 40936 to 41537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,627 DEBUG Processing 1115/1146 atomic regions from SNP 334479 to 335079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:34,795 DEBUG Processing 43/716 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,849 DEBUG Processing 138/759 atomic regions from SNP 41237 to 41838 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,886 DEBUG Processing 258/868 atomic regions from SNP 77155 to 77755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,938 DEBUG Processing 1116/1146 atomic regions from SNP 334779 to 335379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:35,052 DEBUG Processing 44/716 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,071 DEBUG Processing 139/759 atomic regions from SNP 41538 to 42139 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,145 DEBUG Processing 259/868 atomic regions from SNP 77455 to 78055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,246 DEBUG Processing 1117/1146 atomic regions from SNP 335079 to 335679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:35,292 DEBUG Processing 140/759 atomic regions from SNP 41839 to 42440 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,298 DEBUG Processing 45/716 atomic regions from SNP 13244 to 13845 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,406 DEBUG Processing 260/868 atomic regions from SNP 77755 to 78355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,517 DEBUG Processing 141/759 atomic regions from SNP 42140 to 42741 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,533 DEBUG Processing 46/716 atomic regions from SNP 13545 to 14146 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,559 DEBUG Processing 1118/1146 atomic regions from SNP 335379 to 335979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:35,684 DEBUG Processing 261/868 atomic regions from SNP 78055 to 78655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,743 DEBUG Processing 142/759 atomic regions from SNP 42441 to 43042 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,760 DEBUG Processing 47/716 atomic regions from SNP 13846 to 14447 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,875 DEBUG Processing 1119/1146 atomic regions from SNP 335679 to 336279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:35,949 DEBUG Processing 262/868 atomic regions from SNP 78355 to 78955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,965 DEBUG Processing 143/759 atomic regions from SNP 42742 to 43343 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,982 DEBUG Processing 48/716 atomic regions from SNP 14147 to 14748 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,189 DEBUG Processing 144/759 atomic regions from SNP 43043 to 43644 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,204 DEBUG Processing 49/716 atomic regions from SNP 14448 to 15049 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,204 DEBUG Processing 1120/1146 atomic regions from SNP 335979 to 336579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:36,229 DEBUG Processing 263/868 atomic regions from SNP 78655 to 79255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,414 DEBUG Processing 145/759 atomic regions from SNP 43344 to 43945 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,433 DEBUG Processing 50/716 atomic regions from SNP 14749 to 15350 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,509 DEBUG Processing 264/868 atomic regions from SNP 78955 to 79555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,541 DEBUG Processing 1121/1146 atomic regions from SNP 336279 to 336879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:36,638 DEBUG Processing 146/759 atomic regions from SNP 43645 to 44246 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,656 DEBUG Processing 51/716 atomic regions from SNP 15050 to 15651 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,795 DEBUG Processing 265/868 atomic regions from SNP 79255 to 79855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,863 DEBUG Processing 147/759 atomic regions from SNP 43946 to 44547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,881 DEBUG Processing 1122/1146 atomic regions from SNP 336579 to 337179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:36,882 DEBUG Processing 52/716 atomic regions from SNP 15351 to 15952 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,059 DEBUG Processing 266/868 atomic regions from SNP 79555 to 80155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,093 DEBUG Processing 148/759 atomic regions from SNP 44247 to 44848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,111 DEBUG Processing 53/716 atomic regions from SNP 15652 to 16253 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,216 DEBUG Processing 1123/1146 atomic regions from SNP 336879 to 337479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:37,327 DEBUG Processing 267/868 atomic regions from SNP 79855 to 80455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,327 DEBUG Processing 149/759 atomic regions from SNP 44548 to 45149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,344 DEBUG Processing 54/716 atomic regions from SNP 15953 to 16554 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,547 DEBUG Processing 1124/1146 atomic regions from SNP 337179 to 337779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:37,556 DEBUG Processing 150/759 atomic regions from SNP 44849 to 45450 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,573 DEBUG Processing 55/716 atomic regions from SNP 16254 to 16855 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,599 DEBUG Processing 268/868 atomic regions from SNP 80155 to 80755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,785 DEBUG Processing 151/759 atomic regions from SNP 45150 to 45751 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,828 DEBUG Processing 56/716 atomic regions from SNP 16555 to 17156 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,862 DEBUG Processing 269/868 atomic regions from SNP 80455 to 81055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,885 DEBUG Processing 1125/1146 atomic regions from SNP 337479 to 338079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:38,015 DEBUG Processing 152/759 atomic regions from SNP 45451 to 46052 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,067 DEBUG Processing 57/716 atomic regions from SNP 16856 to 17457 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,130 DEBUG Processing 270/868 atomic regions from SNP 80755 to 81355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,215 DEBUG Processing 1126/1146 atomic regions from SNP 337779 to 338379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:38,240 DEBUG Processing 153/759 atomic regions from SNP 45752 to 46353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,300 DEBUG Processing 58/716 atomic regions from SNP 17157 to 17758 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,402 DEBUG Processing 271/868 atomic regions from SNP 81055 to 81655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,467 DEBUG Processing 154/759 atomic regions from SNP 46053 to 46654 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,538 DEBUG Processing 59/716 atomic regions from SNP 17458 to 18059 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,556 DEBUG Processing 1127/1146 atomic regions from SNP 338079 to 338679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:38,679 DEBUG Processing 272/868 atomic regions from SNP 81355 to 81955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,685 DEBUG Processing 155/759 atomic regions from SNP 46354 to 46955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,773 DEBUG Processing 60/716 atomic regions from SNP 17759 to 18360 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,888 DEBUG Processing 1128/1146 atomic regions from SNP 338379 to 338979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:38,904 DEBUG Processing 156/759 atomic regions from SNP 46655 to 47256 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,952 DEBUG Processing 273/868 atomic regions from SNP 81655 to 82255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,018 DEBUG Processing 61/716 atomic regions from SNP 18060 to 18661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,120 DEBUG Processing 157/759 atomic regions from SNP 46956 to 47557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,207 DEBUG Processing 1129/1146 atomic regions from SNP 338679 to 339279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:39,210 DEBUG Processing 274/868 atomic regions from SNP 81955 to 82555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,269 DEBUG Processing 62/716 atomic regions from SNP 18361 to 18962 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,342 DEBUG Processing 158/759 atomic regions from SNP 47257 to 47858 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,467 DEBUG Processing 275/868 atomic regions from SNP 82255 to 82855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,519 DEBUG Processing 1130/1146 atomic regions from SNP 338979 to 339579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:39,521 DEBUG Processing 63/716 atomic regions from SNP 18662 to 19263 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,569 DEBUG Processing 159/759 atomic regions from SNP 47558 to 48159 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,720 DEBUG Processing 276/868 atomic regions from SNP 82555 to 83155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,771 DEBUG Processing 64/716 atomic regions from SNP 18963 to 19564 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,802 DEBUG Processing 160/759 atomic regions from SNP 47859 to 48460 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,835 DEBUG Processing 1131/1146 atomic regions from SNP 339279 to 339879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:39,973 DEBUG Processing 277/868 atomic regions from SNP 82855 to 83455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,029 DEBUG Processing 65/716 atomic regions from SNP 19264 to 19865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,037 DEBUG Processing 161/759 atomic regions from SNP 48160 to 48761 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,151 DEBUG Processing 1132/1146 atomic regions from SNP 339579 to 340179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:40,232 DEBUG Processing 278/868 atomic regions from SNP 83155 to 83755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,270 DEBUG Processing 66/716 atomic regions from SNP 19565 to 20166 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,271 DEBUG Processing 162/759 atomic regions from SNP 48461 to 49062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,448 DEBUG Processing 1133/1146 atomic regions from SNP 339879 to 340479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:40,496 DEBUG Processing 279/868 atomic regions from SNP 83455 to 84055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,501 DEBUG Processing 163/759 atomic regions from SNP 48762 to 49363 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,502 DEBUG Processing 67/716 atomic regions from SNP 19866 to 20467 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,732 DEBUG Processing 68/716 atomic regions from SNP 20167 to 20768 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,734 DEBUG Processing 164/759 atomic regions from SNP 49063 to 49664 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,753 DEBUG Processing 280/868 atomic regions from SNP 83755 to 84355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,756 DEBUG Processing 1134/1146 atomic regions from SNP 340179 to 340779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:40,960 DEBUG Processing 69/716 atomic regions from SNP 20468 to 21069 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,963 DEBUG Processing 165/759 atomic regions from SNP 49364 to 49965 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,017 DEBUG Processing 281/868 atomic regions from SNP 84055 to 84655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,071 DEBUG Processing 1135/1146 atomic regions from SNP 340479 to 341079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:41,186 DEBUG Processing 166/759 atomic regions from SNP 49665 to 50266 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,187 DEBUG Processing 70/716 atomic regions from SNP 20769 to 21370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,279 DEBUG Processing 282/868 atomic regions from SNP 84355 to 84955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,385 DEBUG Processing 1136/1146 atomic regions from SNP 340779 to 341379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:41,414 DEBUG Processing 167/759 atomic regions from SNP 49966 to 50567 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,414 DEBUG Processing 71/716 atomic regions from SNP 21070 to 21671 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,538 DEBUG Processing 283/868 atomic regions from SNP 84655 to 85255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,640 DEBUG Processing 168/759 atomic regions from SNP 50267 to 50868 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,641 DEBUG Processing 72/716 atomic regions from SNP 21371 to 21972 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,699 DEBUG Processing 1137/1146 atomic regions from SNP 341079 to 341679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:41,801 DEBUG Processing 284/868 atomic regions from SNP 84955 to 85555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,867 DEBUG Processing 169/759 atomic regions from SNP 50568 to 51169 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,870 DEBUG Processing 73/716 atomic regions from SNP 21672 to 22273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,006 DEBUG Processing 1138/1146 atomic regions from SNP 341379 to 341979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:42,064 DEBUG Processing 285/868 atomic regions from SNP 85255 to 85855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,098 DEBUG Processing 170/759 atomic regions from SNP 50869 to 51470 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,102 DEBUG Processing 74/716 atomic regions from SNP 21973 to 22574 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,311 DEBUG Processing 1139/1146 atomic regions from SNP 341679 to 342279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:42,333 DEBUG Processing 171/759 atomic regions from SNP 51170 to 51771 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,337 DEBUG Processing 75/716 atomic regions from SNP 22274 to 22875 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,362 DEBUG Processing 286/868 atomic regions from SNP 85555 to 86155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,566 DEBUG Processing 172/759 atomic regions from SNP 51471 to 52072 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,570 DEBUG Processing 76/716 atomic regions from SNP 22575 to 23176 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,617 DEBUG Processing 1140/1146 atomic regions from SNP 341979 to 342579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:42,630 DEBUG Processing 287/868 atomic regions from SNP 85855 to 86455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,794 DEBUG Processing 173/759 atomic regions from SNP 51772 to 52373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,799 DEBUG Processing 77/716 atomic regions from SNP 22876 to 23477 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,898 DEBUG Processing 288/868 atomic regions from SNP 86155 to 86755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,929 DEBUG Processing 1141/1146 atomic regions from SNP 342279 to 342879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:43,017 DEBUG Processing 174/759 atomic regions from SNP 52073 to 52674 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,023 DEBUG Processing 78/716 atomic regions from SNP 23177 to 23778 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,165 DEBUG Processing 289/868 atomic regions from SNP 86455 to 87055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,233 DEBUG Processing 1142/1146 atomic regions from SNP 342579 to 343179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:43,241 DEBUG Processing 175/759 atomic regions from SNP 52374 to 52975 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,255 DEBUG Processing 79/716 atomic regions from SNP 23478 to 24079 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,425 DEBUG Processing 290/868 atomic regions from SNP 86755 to 87355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,469 DEBUG Processing 176/759 atomic regions from SNP 52675 to 53276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,494 DEBUG Processing 80/716 atomic regions from SNP 23779 to 24380 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,545 DEBUG Processing 1143/1146 atomic regions from SNP 342879 to 343479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:43,677 DEBUG Processing 291/868 atomic regions from SNP 87055 to 87655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,697 DEBUG Processing 177/759 atomic regions from SNP 52976 to 53577 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,753 DEBUG Processing 81/716 atomic regions from SNP 24080 to 24681 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,873 DEBUG Processing 1144/1146 atomic regions from SNP 343179 to 343779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:43,924 DEBUG Processing 178/759 atomic regions from SNP 53277 to 53878 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,937 DEBUG Processing 292/868 atomic regions from SNP 87355 to 87955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,983 DEBUG Processing 82/716 atomic regions from SNP 24381 to 24982 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,153 DEBUG Processing 179/759 atomic regions from SNP 53578 to 54179 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,189 DEBUG Processing 1145/1146 atomic regions from SNP 343479 to 344079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:44,202 DEBUG Processing 293/868 atomic regions from SNP 87655 to 88255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,218 DEBUG Processing 83/716 atomic regions from SNP 24682 to 25283 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,381 DEBUG Processing 180/759 atomic regions from SNP 53879 to 54480 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,450 DEBUG Processing 84/716 atomic regions from SNP 24983 to 25584 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,478 DEBUG Processing 294/868 atomic regions from SNP 87955 to 88555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,506 DEBUG Processing 1146/1146 atomic regions from SNP 343779 to 344379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:44,604 DEBUG Processing 181/759 atomic regions from SNP 54180 to 54781 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,670 DEBUG Unique SNPs positions in subchromosome 1: 344380 2025-01-31 09:50:44,681 DEBUG Processing 85/716 atomic regions from SNP 25284 to 25885 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,748 DEBUG Processing 295/868 atomic regions from SNP 88255 to 88855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,828 DEBUG Processing 182/759 atomic regions from SNP 54481 to 55082 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,907 DEBUG Processing 86/716 atomic regions from SNP 25585 to 26186 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,002 DEBUG Processing 296/868 atomic regions from SNP 88555 to 89155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,050 DEBUG Processing 183/759 atomic regions from SNP 54782 to 55383 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,132 DEBUG Processing 87/716 atomic regions from SNP 25886 to 26487 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,258 DEBUG Processing 297/868 atomic regions from SNP 88855 to 89455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,270 DEBUG Processing 184/759 atomic regions from SNP 55083 to 55684 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,357 DEBUG Processing 88/716 atomic regions from SNP 26187 to 26788 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,488 DEBUG Processing 185/759 atomic regions from SNP 55384 to 55985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,510 DEBUG Processing 298/868 atomic regions from SNP 89155 to 89755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,586 DEBUG Processing 89/716 atomic regions from SNP 26488 to 27089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,706 DEBUG Processing 186/759 atomic regions from SNP 55685 to 56286 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,761 DEBUG Processing 299/868 atomic regions from SNP 89455 to 90055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,812 DEBUG Processing 90/716 atomic regions from SNP 26789 to 27390 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,928 DEBUG Processing 187/759 atomic regions from SNP 55986 to 56587 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,014 DEBUG Processing 300/868 atomic regions from SNP 89755 to 90355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,039 DEBUG Processing 91/716 atomic regions from SNP 27090 to 27691 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,150 DEBUG Processing 188/759 atomic regions from SNP 56287 to 56888 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,264 DEBUG Processing 301/868 atomic regions from SNP 90055 to 90655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,265 DEBUG Processing 92/716 atomic regions from SNP 27391 to 27992 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,376 DEBUG Processing 189/759 atomic regions from SNP 56588 to 57189 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,487 DEBUG Processing 93/716 atomic regions from SNP 27692 to 28293 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,517 DEBUG Processing 302/868 atomic regions from SNP 90355 to 90955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,604 DEBUG Processing 190/759 atomic regions from SNP 56889 to 57490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,710 DEBUG Processing 94/716 atomic regions from SNP 27993 to 28594 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,771 DEBUG Processing 303/868 atomic regions from SNP 90655 to 91255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,832 DEBUG Processing 191/759 atomic regions from SNP 57190 to 57791 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,938 DEBUG Processing 95/716 atomic regions from SNP 28294 to 28895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,018 DEBUG Processing 304/868 atomic regions from SNP 90955 to 91555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,058 DEBUG Processing 192/759 atomic regions from SNP 57491 to 58092 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,168 DEBUG Processing 96/716 atomic regions from SNP 28595 to 29196 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,264 DEBUG Processing 305/868 atomic regions from SNP 91255 to 91855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,280 DEBUG Processing 193/759 atomic regions from SNP 57792 to 58393 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,400 DEBUG Processing 97/716 atomic regions from SNP 28896 to 29497 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,501 DEBUG Processing 194/759 atomic regions from SNP 58093 to 58694 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,530 DEBUG Processing 306/868 atomic regions from SNP 91555 to 92155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,647 DEBUG Processing 98/716 atomic regions from SNP 29197 to 29798 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,730 DEBUG Processing 195/759 atomic regions from SNP 58394 to 58995 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,796 DEBUG Processing 307/868 atomic regions from SNP 91855 to 92455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,882 DEBUG Processing 99/716 atomic regions from SNP 29498 to 30099 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,962 DEBUG Processing 196/759 atomic regions from SNP 58695 to 59296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,065 DEBUG Processing 308/868 atomic regions from SNP 92155 to 92755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,119 DEBUG Processing 100/716 atomic regions from SNP 29799 to 30400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,190 DEBUG Processing 197/759 atomic regions from SNP 58996 to 59597 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,341 DEBUG Processing 309/868 atomic regions from SNP 92455 to 93055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,355 DEBUG Processing 101/716 atomic regions from SNP 30100 to 30701 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,417 DEBUG Processing 198/759 atomic regions from SNP 59297 to 59898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,581 DEBUG Processing 102/716 atomic regions from SNP 30401 to 31002 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,606 DEBUG Processing 310/868 atomic regions from SNP 92755 to 93355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,637 DEBUG Processing 199/759 atomic regions from SNP 59598 to 60199 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,802 DEBUG Processing 103/716 atomic regions from SNP 30702 to 31303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,857 DEBUG Processing 311/868 atomic regions from SNP 93055 to 93655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,861 DEBUG Processing 200/759 atomic regions from SNP 59899 to 60500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,029 DEBUG Processing 104/716 atomic regions from SNP 31003 to 31604 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,083 DEBUG Processing 201/759 atomic regions from SNP 60200 to 60800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,108 DEBUG Processing 312/868 atomic regions from SNP 93355 to 93955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,260 DEBUG Processing 105/716 atomic regions from SNP 31304 to 31905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,306 DEBUG Processing 202/759 atomic regions from SNP 60500 to 61100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,359 DEBUG Processing 313/868 atomic regions from SNP 93655 to 94255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,489 DEBUG Processing 106/716 atomic regions from SNP 31605 to 32206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,533 DEBUG Processing 203/759 atomic regions from SNP 60800 to 61400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,608 DEBUG Processing 314/868 atomic regions from SNP 93955 to 94555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,720 DEBUG Processing 107/716 atomic regions from SNP 31906 to 32507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,765 DEBUG Processing 204/759 atomic regions from SNP 61100 to 61700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,862 DEBUG Processing 315/868 atomic regions from SNP 94255 to 94855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,954 DEBUG Processing 108/716 atomic regions from SNP 32207 to 32808 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,004 DEBUG Processing 205/759 atomic regions from SNP 61400 to 62000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,109 DEBUG Processing 316/868 atomic regions from SNP 94555 to 95155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,189 DEBUG Processing 109/716 atomic regions from SNP 32508 to 33109 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,240 DEBUG Processing 206/759 atomic regions from SNP 61700 to 62300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,353 DEBUG Processing 317/868 atomic regions from SNP 94855 to 95455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,432 DEBUG Processing 110/716 atomic regions from SNP 32809 to 33410 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,469 DEBUG Processing 207/759 atomic regions from SNP 62000 to 62600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,603 DEBUG Processing 318/868 atomic regions from SNP 95155 to 95755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,694 DEBUG Processing 111/716 atomic regions from SNP 33110 to 33711 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,698 DEBUG Processing 208/759 atomic regions from SNP 62300 to 62900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,862 DEBUG Processing 319/868 atomic regions from SNP 95455 to 96055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,921 DEBUG Processing 209/759 atomic regions from SNP 62600 to 63200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,955 DEBUG Processing 112/716 atomic regions from SNP 33411 to 34012 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,126 DEBUG Processing 320/868 atomic regions from SNP 95755 to 96355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,148 DEBUG Processing 210/759 atomic regions from SNP 62900 to 63500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,217 DEBUG Processing 113/716 atomic regions from SNP 33712 to 34313 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,371 DEBUG Processing 211/759 atomic regions from SNP 63200 to 63800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,376 DEBUG Processing 321/868 atomic regions from SNP 96055 to 96655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,478 DEBUG Processing 114/716 atomic regions from SNP 34013 to 34614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,595 DEBUG Processing 212/759 atomic regions from SNP 63500 to 64100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,631 DEBUG Processing 322/868 atomic regions from SNP 96355 to 96955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,742 DEBUG Processing 115/716 atomic regions from SNP 34314 to 34915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,821 DEBUG Processing 213/759 atomic regions from SNP 63800 to 64400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,882 DEBUG Processing 323/868 atomic regions from SNP 96655 to 97255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,016 DEBUG Processing 116/716 atomic regions from SNP 34615 to 35216 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,056 DEBUG Processing 214/759 atomic regions from SNP 64100 to 64700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,141 DEBUG Processing 324/868 atomic regions from SNP 96955 to 97555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,287 DEBUG Processing 117/716 atomic regions from SNP 34916 to 35517 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,301 DEBUG Processing 215/759 atomic regions from SNP 64400 to 65000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,403 DEBUG Processing 325/868 atomic regions from SNP 97255 to 97855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,551 DEBUG Processing 216/759 atomic regions from SNP 64700 to 65300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,559 DEBUG Processing 118/716 atomic regions from SNP 35217 to 35818 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,661 DEBUG Processing 326/868 atomic regions from SNP 97555 to 98155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,788 DEBUG Processing 217/759 atomic regions from SNP 65000 to 65600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,834 DEBUG Processing 119/716 atomic regions from SNP 35518 to 36119 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,925 DEBUG Processing 327/868 atomic regions from SNP 97855 to 98455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,029 DEBUG Processing 218/759 atomic regions from SNP 65300 to 65900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,104 DEBUG Processing 120/716 atomic regions from SNP 35819 to 36420 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,188 DEBUG Processing 328/868 atomic regions from SNP 98155 to 98755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,284 DEBUG Processing 219/759 atomic regions from SNP 65600 to 66200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,365 DEBUG Processing 121/716 atomic regions from SNP 36120 to 36721 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,447 DEBUG Processing 329/868 atomic regions from SNP 98455 to 99055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,552 DEBUG Processing 220/759 atomic regions from SNP 65900 to 66500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,622 DEBUG Processing 122/716 atomic regions from SNP 36421 to 37022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,699 DEBUG Processing 330/868 atomic regions from SNP 98755 to 99355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,803 DEBUG Processing 221/759 atomic regions from SNP 66200 to 66800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,883 DEBUG Processing 123/716 atomic regions from SNP 36722 to 37323 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,953 DEBUG Processing 331/868 atomic regions from SNP 99055 to 99655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,046 DEBUG Processing 222/759 atomic regions from SNP 66500 to 67100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,130 DEBUG Processing 124/716 atomic regions from SNP 37023 to 37624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,211 DEBUG Processing 332/868 atomic regions from SNP 99355 to 99955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,290 DEBUG Processing 223/759 atomic regions from SNP 66800 to 67400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,383 DEBUG Processing 125/716 atomic regions from SNP 37324 to 37925 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,475 DEBUG Processing 333/868 atomic regions from SNP 99655 to 100255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,532 DEBUG Processing 224/759 atomic regions from SNP 67100 to 67700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,641 DEBUG Processing 126/716 atomic regions from SNP 37625 to 38226 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,734 DEBUG Processing 334/868 atomic regions from SNP 99955 to 100555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,769 DEBUG Processing 225/759 atomic regions from SNP 67400 to 68000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,903 DEBUG Processing 127/716 atomic regions from SNP 37926 to 38527 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,988 DEBUG Processing 335/868 atomic regions from SNP 100255 to 100855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,018 DEBUG Processing 226/759 atomic regions from SNP 67700 to 68300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,169 DEBUG Processing 128/716 atomic regions from SNP 38227 to 38828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,243 DEBUG Processing 336/868 atomic regions from SNP 100555 to 101155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,268 DEBUG Processing 227/759 atomic regions from SNP 68000 to 68600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,418 DEBUG Processing 129/716 atomic regions from SNP 38528 to 39129 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,498 DEBUG Processing 337/868 atomic regions from SNP 100855 to 101455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,522 DEBUG Processing 228/759 atomic regions from SNP 68300 to 68900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,652 DEBUG Processing 130/716 atomic regions from SNP 38829 to 39430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,750 DEBUG Processing 338/868 atomic regions from SNP 101155 to 101755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,770 DEBUG Processing 229/759 atomic regions from SNP 68600 to 69200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,886 DEBUG Processing 131/716 atomic regions from SNP 39130 to 39731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,002 DEBUG Processing 339/868 atomic regions from SNP 101455 to 102055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,022 DEBUG Processing 230/759 atomic regions from SNP 68900 to 69500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,122 DEBUG Processing 132/716 atomic regions from SNP 39431 to 40032 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,252 DEBUG Processing 340/868 atomic regions from SNP 101755 to 102355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,284 DEBUG Processing 231/759 atomic regions from SNP 69200 to 69800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,359 DEBUG Processing 133/716 atomic regions from SNP 39732 to 40333 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,502 DEBUG Processing 341/868 atomic regions from SNP 102055 to 102655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,534 DEBUG Processing 232/759 atomic regions from SNP 69500 to 70100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,598 DEBUG Processing 134/716 atomic regions from SNP 40033 to 40634 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,756 DEBUG Processing 342/868 atomic regions from SNP 102355 to 102955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,791 DEBUG Processing 233/759 atomic regions from SNP 69800 to 70400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,839 DEBUG Processing 135/716 atomic regions from SNP 40334 to 40935 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,009 DEBUG Processing 343/868 atomic regions from SNP 102655 to 103255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,054 DEBUG Processing 234/759 atomic regions from SNP 70100 to 70700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,076 DEBUG Processing 136/716 atomic regions from SNP 40635 to 41236 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,232 DEBUG Segmenting atomic regions: 2025-01-31 09:50:57,270 DEBUG Processing 344/868 atomic regions from SNP 102955 to 103555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,318 DEBUG Processing 137/716 atomic regions from SNP 40936 to 41537 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,319 DEBUG Processing 235/759 atomic regions from SNP 70400 to 71000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,332 DEBUG Processing 1/745 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,530 DEBUG Processing 345/868 atomic regions from SNP 103255 to 103855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,565 DEBUG Processing 236/759 atomic regions from SNP 70700 to 71300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,568 DEBUG Processing 2/745 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,579 DEBUG Processing 138/716 atomic regions from SNP 41237 to 41838 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,790 DEBUG Processing 346/868 atomic regions from SNP 103555 to 104155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,824 DEBUG Processing 237/759 atomic regions from SNP 71000 to 71600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,829 DEBUG Processing 3/745 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,850 DEBUG Processing 139/716 atomic regions from SNP 41538 to 42139 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,046 DEBUG Processing 347/868 atomic regions from SNP 103855 to 104455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,075 DEBUG Processing 238/759 atomic regions from SNP 71300 to 71900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,093 DEBUG Processing 4/745 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,114 DEBUG Processing 140/716 atomic regions from SNP 41839 to 42440 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,300 DEBUG Processing 348/868 atomic regions from SNP 104155 to 104755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,326 DEBUG Processing 239/759 atomic regions from SNP 71600 to 72200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,342 DEBUG Processing 5/745 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,379 DEBUG Processing 141/716 atomic regions from SNP 42140 to 42741 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,547 DEBUG Processing 349/868 atomic regions from SNP 104455 to 105055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,578 DEBUG Processing 6/745 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,583 DEBUG Processing 240/759 atomic regions from SNP 71900 to 72500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,630 DEBUG Processing 142/716 atomic regions from SNP 42441 to 43042 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,794 DEBUG Processing 350/868 atomic regions from SNP 104755 to 105355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,841 DEBUG Processing 7/745 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,854 DEBUG Processing 241/759 atomic regions from SNP 72200 to 72800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,877 DEBUG Processing 143/716 atomic regions from SNP 42742 to 43343 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,039 DEBUG Processing 351/868 atomic regions from SNP 105055 to 105655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,099 DEBUG Processing 8/745 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,111 DEBUG Processing 242/759 atomic regions from SNP 72500 to 73100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,127 DEBUG Processing 144/716 atomic regions from SNP 43043 to 43644 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,287 DEBUG Processing 352/868 atomic regions from SNP 105355 to 105955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,328 DEBUG Processing 9/745 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,358 DEBUG Processing 243/759 atomic regions from SNP 72800 to 73400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,368 DEBUG Processing 145/716 atomic regions from SNP 43344 to 43945 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,529 DEBUG Processing 353/868 atomic regions from SNP 105655 to 106255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,551 DEBUG Processing 10/745 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,597 DEBUG Processing 244/759 atomic regions from SNP 73100 to 73700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,600 DEBUG Processing 146/716 atomic regions from SNP 43645 to 44246 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,773 DEBUG Processing 11/745 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,775 DEBUG Processing 354/868 atomic regions from SNP 105955 to 106555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,831 DEBUG Processing 245/759 atomic regions from SNP 73400 to 74000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,834 DEBUG Processing 147/716 atomic regions from SNP 43946 to 44547 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,994 DEBUG Processing 12/745 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,022 DEBUG Processing 355/868 atomic regions from SNP 106255 to 106855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,069 DEBUG Processing 148/716 atomic regions from SNP 44247 to 44848 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,073 DEBUG Processing 246/759 atomic regions from SNP 73700 to 74300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,208 DEBUG Processing 13/745 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,277 DEBUG Processing 356/868 atomic regions from SNP 106555 to 107155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,298 DEBUG Processing 149/716 atomic regions from SNP 44548 to 45149 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,302 DEBUG Processing 247/759 atomic regions from SNP 74000 to 74600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,422 DEBUG Processing 14/745 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,531 DEBUG Processing 150/716 atomic regions from SNP 44849 to 45450 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,531 DEBUG Processing 248/759 atomic regions from SNP 74300 to 74900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,538 DEBUG Processing 357/868 atomic regions from SNP 106855 to 107455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,631 DEBUG Processing 15/745 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,758 DEBUG Processing 249/759 atomic regions from SNP 74600 to 75200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,760 DEBUG Processing 151/716 atomic regions from SNP 45150 to 45751 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,794 DEBUG Processing 358/868 atomic regions from SNP 107155 to 107755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,850 DEBUG Processing 16/745 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,984 DEBUG Processing 152/716 atomic regions from SNP 45451 to 46052 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,986 DEBUG Processing 250/759 atomic regions from SNP 74900 to 75500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,048 DEBUG Processing 359/868 atomic regions from SNP 107455 to 108055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,068 DEBUG Processing 17/745 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,207 DEBUG Processing 153/716 atomic regions from SNP 45752 to 46353 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,211 DEBUG Processing 251/759 atomic regions from SNP 75200 to 75800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,291 DEBUG Processing 18/745 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,309 DEBUG Processing 360/868 atomic regions from SNP 107755 to 108355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,425 DEBUG Processing 252/759 atomic regions from SNP 75500 to 76100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,426 DEBUG Processing 154/716 atomic regions from SNP 46053 to 46654 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,511 DEBUG Processing 19/745 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,571 DEBUG Processing 361/868 atomic regions from SNP 108055 to 108655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,639 DEBUG Processing 253/759 atomic regions from SNP 75800 to 76400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,641 DEBUG Processing 155/716 atomic regions from SNP 46354 to 46955 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,730 DEBUG Processing 20/745 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,831 DEBUG Processing 362/868 atomic regions from SNP 108355 to 108955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,855 DEBUG Processing 254/759 atomic regions from SNP 76100 to 76700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,869 DEBUG Processing 156/716 atomic regions from SNP 46655 to 47256 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,949 DEBUG Processing 21/745 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,075 DEBUG Processing 255/759 atomic regions from SNP 76400 to 77000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,088 DEBUG Processing 363/868 atomic regions from SNP 108655 to 109255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,100 DEBUG Processing 157/716 atomic regions from SNP 46956 to 47557 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,167 DEBUG Processing 22/745 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,293 DEBUG Processing 256/759 atomic regions from SNP 76700 to 77300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,324 DEBUG Processing 158/716 atomic regions from SNP 47257 to 47858 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,353 DEBUG Processing 364/868 atomic regions from SNP 108955 to 109555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,387 DEBUG Processing 23/745 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,516 DEBUG Processing 257/759 atomic regions from SNP 77000 to 77600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,555 DEBUG Processing 159/716 atomic regions from SNP 47558 to 48159 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,611 DEBUG Processing 24/745 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,613 DEBUG Processing 365/868 atomic regions from SNP 109255 to 109855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,735 DEBUG Processing 258/759 atomic regions from SNP 77300 to 77900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,777 DEBUG Processing 160/716 atomic regions from SNP 47859 to 48460 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,826 DEBUG Processing 25/745 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,868 DEBUG Processing 366/868 atomic regions from SNP 109555 to 110155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,951 DEBUG Processing 259/759 atomic regions from SNP 77600 to 78200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,000 DEBUG Processing 161/716 atomic regions from SNP 48160 to 48761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,043 DEBUG Processing 26/745 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,117 DEBUG Processing 367/868 atomic regions from SNP 109855 to 110455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,171 DEBUG Processing 260/759 atomic regions from SNP 77900 to 78500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,219 DEBUG Processing 162/716 atomic regions from SNP 48461 to 49062 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,254 DEBUG Processing 27/745 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,377 DEBUG Processing 368/868 atomic regions from SNP 110155 to 110755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,393 DEBUG Processing 261/759 atomic regions from SNP 78200 to 78800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,442 DEBUG Processing 163/716 atomic regions from SNP 48762 to 49363 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,463 DEBUG Processing 28/745 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,615 DEBUG Processing 262/759 atomic regions from SNP 78500 to 79100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,637 DEBUG Processing 369/868 atomic regions from SNP 110455 to 111055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,667 DEBUG Processing 164/716 atomic regions from SNP 49063 to 49664 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,679 DEBUG Processing 29/745 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,836 DEBUG Processing 263/759 atomic regions from SNP 78800 to 79400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,893 DEBUG Processing 165/716 atomic regions from SNP 49364 to 49965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,898 DEBUG Processing 30/745 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,901 DEBUG Processing 370/868 atomic regions from SNP 110755 to 111355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,057 DEBUG Processing 264/759 atomic regions from SNP 79100 to 79700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,120 DEBUG Processing 31/745 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,122 DEBUG Processing 166/716 atomic regions from SNP 49665 to 50266 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,158 DEBUG Processing 371/868 atomic regions from SNP 111055 to 111655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,279 DEBUG Processing 265/759 atomic regions from SNP 79400 to 80000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,340 DEBUG Processing 32/745 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,350 DEBUG Processing 167/716 atomic regions from SNP 49966 to 50567 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,422 DEBUG Processing 372/868 atomic regions from SNP 111355 to 111955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,503 DEBUG Processing 266/759 atomic regions from SNP 79700 to 80300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,557 DEBUG Processing 33/745 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,576 DEBUG Processing 168/716 atomic regions from SNP 50267 to 50868 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,682 DEBUG Processing 373/868 atomic regions from SNP 111655 to 112255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,726 DEBUG Processing 267/759 atomic regions from SNP 80000 to 80600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,769 DEBUG Processing 34/745 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,795 DEBUG Processing 169/716 atomic regions from SNP 50568 to 51169 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,946 DEBUG Processing 374/868 atomic regions from SNP 111955 to 112555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,948 DEBUG Processing 268/759 atomic regions from SNP 80300 to 80900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,981 DEBUG Processing 35/745 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,015 DEBUG Processing 170/716 atomic regions from SNP 50869 to 51470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,166 DEBUG Processing 269/759 atomic regions from SNP 80600 to 81200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,198 DEBUG Processing 36/745 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,205 DEBUG Processing 375/868 atomic regions from SNP 112255 to 112855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,241 DEBUG Processing 171/716 atomic regions from SNP 51170 to 51771 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,385 DEBUG Processing 270/759 atomic regions from SNP 80900 to 81500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,413 DEBUG Processing 37/745 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,468 DEBUG Processing 376/868 atomic regions from SNP 112555 to 113155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,470 DEBUG Processing 172/716 atomic regions from SNP 51471 to 52072 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,603 DEBUG Processing 271/759 atomic regions from SNP 81200 to 81800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,633 DEBUG Processing 38/745 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,705 DEBUG Processing 173/716 atomic regions from SNP 51772 to 52373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,733 DEBUG Processing 377/868 atomic regions from SNP 112855 to 113455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,829 DEBUG Processing 272/759 atomic regions from SNP 81500 to 82100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,862 DEBUG Processing 39/745 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,936 DEBUG Processing 174/716 atomic regions from SNP 52073 to 52674 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,022 DEBUG Processing 378/868 atomic regions from SNP 113155 to 113755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,049 DEBUG Processing 273/759 atomic regions from SNP 81800 to 82400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,086 DEBUG Processing 40/745 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,155 DEBUG Processing 175/716 atomic regions from SNP 52374 to 52975 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,269 DEBUG Processing 274/759 atomic regions from SNP 82100 to 82700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,307 DEBUG Processing 379/868 atomic regions from SNP 113455 to 114055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,312 DEBUG Processing 41/745 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,379 DEBUG Processing 176/716 atomic regions from SNP 52675 to 53276 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,490 DEBUG Processing 275/759 atomic regions from SNP 82400 to 83000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,527 DEBUG Processing 42/745 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,579 DEBUG Processing 380/868 atomic regions from SNP 113755 to 114355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,604 DEBUG Processing 177/716 atomic regions from SNP 52976 to 53577 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,710 DEBUG Processing 276/759 atomic regions from SNP 82700 to 83300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,741 DEBUG Processing 43/745 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,830 DEBUG Processing 178/716 atomic regions from SNP 53277 to 53878 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,838 DEBUG Processing 381/868 atomic regions from SNP 114055 to 114655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,929 DEBUG Processing 277/759 atomic regions from SNP 83000 to 83600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,960 DEBUG Processing 44/745 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,068 DEBUG Processing 179/716 atomic regions from SNP 53578 to 54179 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,098 DEBUG Processing 382/868 atomic regions from SNP 114355 to 114955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,153 DEBUG Processing 278/759 atomic regions from SNP 83300 to 83900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,179 DEBUG Processing 45/745 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,297 DEBUG Processing 180/716 atomic regions from SNP 53879 to 54480 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,351 DEBUG Processing 383/868 atomic regions from SNP 114655 to 115255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,374 DEBUG Processing 279/759 atomic regions from SNP 83600 to 84200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,397 DEBUG Processing 46/745 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,517 DEBUG Processing 181/716 atomic regions from SNP 54180 to 54781 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,590 DEBUG Processing 280/759 atomic regions from SNP 83900 to 84500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,608 DEBUG Processing 384/868 atomic regions from SNP 114955 to 115555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,628 DEBUG Processing 47/745 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,736 DEBUG Processing 182/716 atomic regions from SNP 54481 to 55082 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,811 DEBUG Processing 281/759 atomic regions from SNP 84200 to 84800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,870 DEBUG Processing 385/868 atomic regions from SNP 115255 to 115855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,874 DEBUG Processing 48/745 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,962 DEBUG Processing 183/716 atomic regions from SNP 54782 to 55383 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,029 DEBUG Processing 282/759 atomic regions from SNP 84500 to 85100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,106 DEBUG Processing 49/745 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,137 DEBUG Processing 386/868 atomic regions from SNP 115555 to 116155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,184 DEBUG Processing 184/716 atomic regions from SNP 55083 to 55684 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,246 DEBUG Processing 283/759 atomic regions from SNP 84800 to 85400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,340 DEBUG Processing 50/745 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,392 DEBUG Processing 387/868 atomic regions from SNP 115855 to 116455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,405 DEBUG Processing 185/716 atomic regions from SNP 55384 to 55985 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,462 DEBUG Processing 284/759 atomic regions from SNP 85100 to 85700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,589 DEBUG Processing 51/745 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,626 DEBUG Processing 186/716 atomic regions from SNP 55685 to 56286 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,649 DEBUG Processing 388/868 atomic regions from SNP 116155 to 116755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,680 DEBUG Processing 285/759 atomic regions from SNP 85400 to 86000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,834 DEBUG Processing 52/745 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,855 DEBUG Processing 187/716 atomic regions from SNP 55986 to 56587 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,906 DEBUG Processing 286/759 atomic regions from SNP 85700 to 86300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,909 DEBUG Processing 389/868 atomic regions from SNP 116455 to 117055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,071 DEBUG Processing 53/745 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,086 DEBUG Processing 188/716 atomic regions from SNP 56287 to 56888 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,130 DEBUG Processing 287/759 atomic regions from SNP 86000 to 86600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,167 DEBUG Processing 390/868 atomic regions from SNP 116755 to 117355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,297 DEBUG Processing 54/745 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,317 DEBUG Processing 189/716 atomic regions from SNP 56588 to 57189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,354 DEBUG Processing 288/759 atomic regions from SNP 86300 to 86900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,430 DEBUG Processing 391/868 atomic regions from SNP 117055 to 117655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,517 DEBUG Processing 55/745 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,544 DEBUG Processing 190/716 atomic regions from SNP 56889 to 57490 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,577 DEBUG Processing 289/759 atomic regions from SNP 86600 to 87200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,683 DEBUG Processing 392/868 atomic regions from SNP 117355 to 117955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,733 DEBUG Processing 56/745 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,766 DEBUG Processing 191/716 atomic regions from SNP 57190 to 57791 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,797 DEBUG Processing 290/759 atomic regions from SNP 86900 to 87500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,934 DEBUG Processing 393/868 atomic regions from SNP 117655 to 118255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,944 DEBUG Processing 57/745 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,987 DEBUG Processing 192/716 atomic regions from SNP 57491 to 58092 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,018 DEBUG Processing 291/759 atomic regions from SNP 87200 to 87800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,164 DEBUG Processing 58/745 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,182 DEBUG Processing 394/868 atomic regions from SNP 117955 to 118555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,213 DEBUG Processing 193/716 atomic regions from SNP 57792 to 58393 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,239 DEBUG Processing 292/759 atomic regions from SNP 87500 to 88100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,396 DEBUG Processing 59/745 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,434 DEBUG Processing 395/868 atomic regions from SNP 118255 to 118855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,444 DEBUG Processing 194/716 atomic regions from SNP 58093 to 58694 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,464 DEBUG Processing 293/759 atomic regions from SNP 87800 to 88400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,633 DEBUG Processing 60/745 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,670 DEBUG Processing 195/716 atomic regions from SNP 58394 to 58995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,678 DEBUG Processing 396/868 atomic regions from SNP 118555 to 119155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,687 DEBUG Processing 294/759 atomic regions from SNP 88100 to 88700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,874 DEBUG Processing 61/745 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,895 DEBUG Processing 196/716 atomic regions from SNP 58695 to 59296 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,911 DEBUG Processing 295/759 atomic regions from SNP 88400 to 89000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,937 DEBUG Processing 397/868 atomic regions from SNP 118855 to 119455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,129 DEBUG Processing 197/716 atomic regions from SNP 58996 to 59597 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,129 DEBUG Processing 62/745 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,140 DEBUG Processing 296/759 atomic regions from SNP 88700 to 89300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,206 DEBUG Processing 398/868 atomic regions from SNP 119155 to 119755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,229 DEBUG Subchromosome time: 414.2437332380796, subchromosome SNPs: 344380 2025-01-31 09:51:11,229 DEBUG Estimated BADs: [1.68, 6.73, 3.37, 1.68, 3.37, 10.10, 3.37, 6.73, 1.68, 3.37, 1.12, 1.68, 6.73, 3.37, 6.73, 3.37, 1.12, 3.37, 1.12, 3.37, 6.73, 3.37, 6.73, 3.37, 6.73, 3.37, 6.73] SNP counts: [52819, 11697, 14122, 7749, 39719, 2673, 17114, 15883, 17684, 6922, 12865, 4554, 3279, 19913, 9787, 6301, 5386, 3002, 8399, 10209, 3005, 26205, 2309, 10959, 13324, 10199, 8302] SNP IDs counts: [52819, 11697, 14122, 7749, 39719, 2673, 17114, 15883, 17684, 6922, 12865, 4554, 3279, 19913, 9787, 6301, 5386, 3002, 8399, 10209, 3005, 26205, 2309, 10959, 13324, 10199, 8302] Critical gap: 753329bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 33.43Mbp, 39.66Mbp, 47.66Mbp, 52.09Mbp, 73.89Mbp, 75.37Mbp, 84.84Mbp, 93.75Mbp, 104.18Mbp, 108.08Mbp, 115.64Mbp, 118.36Mbp, 120.07Mbp, 131.01Mbp, 136.11Mbp, 139.52Mbp, 142.73Mbp, 144.53Mbp, 149.44Mbp, 154.97Mbp, 156.60Mbp, 170.84Mbp, 172.12Mbp, 178.30Mbp, 185.47Mbp, 190.87Mbp, 195.47Mbp] 2025-01-31 09:51:11,229 DEBUG chr1 time: 414.2444179210579 s 2025-01-31 09:51:11,361 DEBUG Processing 198/716 atomic regions from SNP 59297 to 59898 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,370 DEBUG Processing 297/759 atomic regions from SNP 89000 to 89600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,379 DEBUG Processing 63/745 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,428 DEBUG chr1: Fitting background model for 27 segments 2025-01-31 09:51:11,471 DEBUG Processing 399/868 atomic regions from SNP 119455 to 120055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,592 DEBUG Processing 199/716 atomic regions from SNP 59598 to 60199 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,605 DEBUG Processing 298/759 atomic regions from SNP 89300 to 89900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,622 DEBUG Processing 64/745 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,730 DEBUG Processing 400/868 atomic regions from SNP 119755 to 120355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,820 DEBUG Processing 200/716 atomic regions from SNP 59899 to 60500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,841 DEBUG Processing 299/759 atomic regions from SNP 89600 to 90200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,861 DEBUG Processing 65/745 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,991 DEBUG Processing 401/868 atomic regions from SNP 120055 to 120655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,049 DEBUG Processing 201/716 atomic regions from SNP 60200 to 60801 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,071 DEBUG Processing 300/759 atomic regions from SNP 89900 to 90500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,097 DEBUG Processing 66/745 atomic regions from SNP 19565 to 20166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,271 DEBUG Processing 402/868 atomic regions from SNP 120355 to 120955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,286 DEBUG Processing 202/716 atomic regions from SNP 60501 to 61102 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,306 DEBUG Processing 301/759 atomic regions from SNP 90200 to 90800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,326 DEBUG Processing 67/745 atomic regions from SNP 19866 to 20467 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,522 DEBUG Processing 203/716 atomic regions from SNP 60802 to 61403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,542 DEBUG Processing 302/759 atomic regions from SNP 90500 to 91100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,555 DEBUG Processing 403/868 atomic regions from SNP 120655 to 121255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,556 DEBUG Processing 68/745 atomic regions from SNP 20167 to 20768 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,749 DEBUG Processing 204/716 atomic regions from SNP 61103 to 61704 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,770 DEBUG Processing 303/759 atomic regions from SNP 90800 to 91400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,779 DEBUG Processing 69/745 atomic regions from SNP 20468 to 21069 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,838 DEBUG Processing 404/868 atomic regions from SNP 120955 to 121555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,977 DEBUG Processing 205/716 atomic regions from SNP 61404 to 62005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,002 DEBUG Processing 304/759 atomic regions from SNP 91100 to 91700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,013 DEBUG Processing 70/745 atomic regions from SNP 20769 to 21370 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,109 DEBUG Processing 405/868 atomic regions from SNP 121255 to 121855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,208 DEBUG Processing 206/716 atomic regions from SNP 61705 to 62306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,234 DEBUG Processing 305/759 atomic regions from SNP 91400 to 92000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,247 DEBUG Processing 71/745 atomic regions from SNP 21070 to 21671 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,395 DEBUG Processing 406/868 atomic regions from SNP 121555 to 122155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,445 DEBUG Processing 207/716 atomic regions from SNP 62006 to 62607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,470 DEBUG Processing 306/759 atomic regions from SNP 91700 to 92300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,505 DEBUG Processing 72/745 atomic regions from SNP 21371 to 21972 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,681 DEBUG Processing 208/716 atomic regions from SNP 62307 to 62908 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,686 DEBUG Processing 407/868 atomic regions from SNP 121855 to 122455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,703 DEBUG Processing 307/759 atomic regions from SNP 92000 to 92600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,739 DEBUG Processing 73/745 atomic regions from SNP 21672 to 22273 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,918 DEBUG Processing 209/716 atomic regions from SNP 62608 to 63209 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,936 DEBUG Processing 308/759 atomic regions from SNP 92300 to 92900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,964 DEBUG Processing 74/745 atomic regions from SNP 21973 to 22574 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,985 DEBUG Processing 408/868 atomic regions from SNP 122155 to 122755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,152 DEBUG Processing 210/716 atomic regions from SNP 62909 to 63510 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,167 DEBUG Processing 309/759 atomic regions from SNP 92600 to 93200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,192 DEBUG Processing 75/745 atomic regions from SNP 22274 to 22875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,274 DEBUG Processing 409/868 atomic regions from SNP 122455 to 123055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,379 DEBUG Processing 211/716 atomic regions from SNP 63210 to 63811 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,393 DEBUG Processing 310/759 atomic regions from SNP 92900 to 93500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,416 DEBUG Processing 76/745 atomic regions from SNP 22575 to 23176 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,551 DEBUG Processing 410/868 atomic regions from SNP 122755 to 123355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,600 DEBUG Processing 212/716 atomic regions from SNP 63511 to 64112 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,614 DEBUG Processing 311/759 atomic regions from SNP 93200 to 93800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,637 DEBUG Processing 77/745 atomic regions from SNP 22876 to 23477 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,824 DEBUG Processing 213/716 atomic regions from SNP 63812 to 64413 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,824 DEBUG Processing 411/868 atomic regions from SNP 123055 to 123655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,838 DEBUG Processing 312/759 atomic regions from SNP 93500 to 94100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,855 DEBUG Processing 78/745 atomic regions from SNP 23177 to 23778 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,046 DEBUG Processing 214/716 atomic regions from SNP 64113 to 64714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,059 DEBUG Processing 313/759 atomic regions from SNP 93800 to 94400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,071 DEBUG Processing 79/745 atomic regions from SNP 23478 to 24079 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,089 DEBUG Processing 412/868 atomic regions from SNP 123355 to 123955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,267 DEBUG Processing 215/716 atomic regions from SNP 64414 to 65015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,280 DEBUG Processing 314/759 atomic regions from SNP 94100 to 94700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,288 DEBUG Processing 80/745 atomic regions from SNP 23779 to 24380 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,352 DEBUG Processing 413/868 atomic regions from SNP 123655 to 124255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,484 DEBUG Processing 216/716 atomic regions from SNP 64715 to 65316 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,495 DEBUG Processing 315/759 atomic regions from SNP 94400 to 95000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,501 DEBUG Processing 81/745 atomic regions from SNP 24080 to 24681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,615 DEBUG Processing 414/868 atomic regions from SNP 123955 to 124555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,702 DEBUG Processing 217/716 atomic regions from SNP 65016 to 65617 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,712 DEBUG Processing 316/759 atomic regions from SNP 94700 to 95300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,713 DEBUG Processing 82/745 atomic regions from SNP 24381 to 24982 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,874 DEBUG Processing 415/868 atomic regions from SNP 124255 to 124855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,923 DEBUG Processing 218/716 atomic regions from SNP 65317 to 65918 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,929 DEBUG Processing 83/745 atomic regions from SNP 24682 to 25283 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,933 DEBUG Processing 317/759 atomic regions from SNP 95000 to 95600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,134 DEBUG Processing 416/868 atomic regions from SNP 124555 to 125155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,143 DEBUG Processing 84/745 atomic regions from SNP 24983 to 25584 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,144 DEBUG Processing 219/716 atomic regions from SNP 65618 to 66219 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,150 DEBUG Processing 318/759 atomic regions from SNP 95300 to 95900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,356 DEBUG Processing 85/745 atomic regions from SNP 25284 to 25885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,365 DEBUG Processing 220/716 atomic regions from SNP 65919 to 66520 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,370 DEBUG Processing 319/759 atomic regions from SNP 95600 to 96200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,392 DEBUG Processing 417/868 atomic regions from SNP 124855 to 125455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,568 DEBUG Processing 86/745 atomic regions from SNP 25585 to 26186 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,584 DEBUG Processing 221/716 atomic regions from SNP 66220 to 66821 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,587 DEBUG Processing 320/759 atomic regions from SNP 95900 to 96500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,647 DEBUG Processing 418/868 atomic regions from SNP 125155 to 125755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,774 DEBUG Processing 87/745 atomic regions from SNP 25886 to 26487 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,797 DEBUG Processing 321/759 atomic regions from SNP 96200 to 96800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,821 DEBUG Processing 222/716 atomic regions from SNP 66521 to 67122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,904 DEBUG Processing 419/868 atomic regions from SNP 125455 to 126055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,985 DEBUG Processing 88/745 atomic regions from SNP 26187 to 26788 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,010 DEBUG Processing 322/759 atomic regions from SNP 96500 to 97100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,066 DEBUG Processing 223/716 atomic regions from SNP 66822 to 67423 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,153 DEBUG Processing 420/868 atomic regions from SNP 125755 to 126355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,194 DEBUG Processing 89/745 atomic regions from SNP 26488 to 27089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,225 DEBUG Processing 323/759 atomic regions from SNP 96800 to 97400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,288 DEBUG Processing 224/716 atomic regions from SNP 67123 to 67724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,402 DEBUG Processing 421/868 atomic regions from SNP 126055 to 126655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,405 DEBUG Processing 90/745 atomic regions from SNP 26789 to 27390 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,447 DEBUG Processing 324/759 atomic regions from SNP 97100 to 97700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,508 DEBUG Processing 225/716 atomic regions from SNP 67424 to 68025 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,609 DEBUG Processing 91/745 atomic regions from SNP 27090 to 27691 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,655 DEBUG Processing 422/868 atomic regions from SNP 126355 to 126955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,675 DEBUG Processing 325/759 atomic regions from SNP 97400 to 98000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,728 DEBUG Processing 226/716 atomic regions from SNP 67725 to 68326 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,815 DEBUG Processing 92/745 atomic regions from SNP 27391 to 27992 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,894 DEBUG Processing 326/759 atomic regions from SNP 97700 to 98300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,909 DEBUG Processing 423/868 atomic regions from SNP 126655 to 127255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,952 DEBUG Processing 227/716 atomic regions from SNP 68026 to 68627 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,030 DEBUG Processing 93/745 atomic regions from SNP 27692 to 28293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,106 DEBUG Processing 327/759 atomic regions from SNP 98000 to 98600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,151 DEBUG Processing 424/868 atomic regions from SNP 126955 to 127555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,171 DEBUG Processing 228/716 atomic regions from SNP 68327 to 68928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,257 DEBUG Processing 94/745 atomic regions from SNP 27993 to 28594 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,315 DEBUG Processing 328/759 atomic regions from SNP 98300 to 98900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,386 DEBUG Processing 229/716 atomic regions from SNP 68628 to 69229 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,397 DEBUG Processing 425/868 atomic regions from SNP 127255 to 127855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,490 DEBUG Processing 95/745 atomic regions from SNP 28294 to 28895 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,530 DEBUG Processing 329/759 atomic regions from SNP 98600 to 99200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,599 DEBUG Processing 230/716 atomic regions from SNP 68929 to 69530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,642 DEBUG Processing 426/868 atomic regions from SNP 127555 to 128155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,710 DEBUG Processing 96/745 atomic regions from SNP 28595 to 29196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,760 DEBUG Processing 330/759 atomic regions from SNP 98900 to 99500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,813 DEBUG Processing 231/716 atomic regions from SNP 69230 to 69831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,894 DEBUG Processing 427/868 atomic regions from SNP 127855 to 128455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,924 DEBUG Processing 97/745 atomic regions from SNP 28896 to 29497 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,998 DEBUG Processing 331/759 atomic regions from SNP 99200 to 99800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,029 DEBUG Processing 232/716 atomic regions from SNP 69531 to 70132 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,132 DEBUG Processing 98/745 atomic regions from SNP 29197 to 29798 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,145 DEBUG Processing 428/868 atomic regions from SNP 128155 to 128755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,222 DEBUG Processing 332/759 atomic regions from SNP 99500 to 100100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,257 DEBUG Processing 233/716 atomic regions from SNP 69832 to 70433 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,336 DEBUG Processing 99/745 atomic regions from SNP 29498 to 30099 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,402 DEBUG Processing 429/868 atomic regions from SNP 128455 to 129055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,453 DEBUG Processing 333/759 atomic regions from SNP 99800 to 100400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,481 DEBUG Processing 234/716 atomic regions from SNP 70133 to 70734 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,557 DEBUG Processing 100/745 atomic regions from SNP 29799 to 30400 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,656 DEBUG Processing 430/868 atomic regions from SNP 128755 to 129355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,699 DEBUG Processing 334/759 atomic regions from SNP 100100 to 100700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,709 DEBUG Processing 235/716 atomic regions from SNP 70434 to 71035 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,764 DEBUG Processing 101/745 atomic regions from SNP 30100 to 30701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,913 DEBUG Processing 431/868 atomic regions from SNP 129055 to 129655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,949 DEBUG Processing 335/759 atomic regions from SNP 100400 to 101000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,952 DEBUG Processing 236/716 atomic regions from SNP 70735 to 71336 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,977 DEBUG Processing 102/745 atomic regions from SNP 30401 to 31002 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,171 DEBUG Processing 432/868 atomic regions from SNP 129355 to 129955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,182 DEBUG Processing 237/716 atomic regions from SNP 71036 to 71637 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,193 DEBUG Processing 103/745 atomic regions from SNP 30702 to 31303 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,196 DEBUG Processing 336/759 atomic regions from SNP 100700 to 101300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,412 DEBUG Processing 238/716 atomic regions from SNP 71337 to 71938 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,424 DEBUG Processing 104/745 atomic regions from SNP 31003 to 31604 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,432 DEBUG Processing 433/868 atomic regions from SNP 129655 to 130255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,448 DEBUG Processing 337/759 atomic regions from SNP 101000 to 101600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,645 DEBUG Processing 239/716 atomic regions from SNP 71638 to 72239 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,660 DEBUG Processing 105/745 atomic regions from SNP 31304 to 31905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,684 DEBUG Processing 434/868 atomic regions from SNP 129955 to 130555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,695 DEBUG Processing 338/759 atomic regions from SNP 101300 to 101900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,875 DEBUG Processing 240/716 atomic regions from SNP 71939 to 72540 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,901 DEBUG Processing 106/745 atomic regions from SNP 31605 to 32206 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,940 DEBUG Processing 435/868 atomic regions from SNP 130255 to 130855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,945 DEBUG Processing 339/759 atomic regions from SNP 101600 to 102200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,105 DEBUG Processing 241/716 atomic regions from SNP 72240 to 72841 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,137 DEBUG Processing 107/745 atomic regions from SNP 31906 to 32507 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,193 DEBUG Processing 340/759 atomic regions from SNP 101900 to 102500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,194 DEBUG Processing 436/868 atomic regions from SNP 130555 to 131155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,344 DEBUG Processing 242/716 atomic regions from SNP 72541 to 73142 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,371 DEBUG Processing 108/745 atomic regions from SNP 32207 to 32808 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,435 DEBUG Processing 341/759 atomic regions from SNP 102200 to 102800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,448 DEBUG Processing 437/868 atomic regions from SNP 130855 to 131455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,575 DEBUG Processing 243/716 atomic regions from SNP 72842 to 73443 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,605 DEBUG Processing 109/745 atomic regions from SNP 32508 to 33109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,684 DEBUG Processing 342/759 atomic regions from SNP 102500 to 103100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,703 DEBUG Processing 438/868 atomic regions from SNP 131155 to 131755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,816 DEBUG Processing 244/716 atomic regions from SNP 73143 to 73744 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,851 DEBUG Processing 110/745 atomic regions from SNP 32809 to 33410 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,926 DEBUG Processing 343/759 atomic regions from SNP 102800 to 103400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,954 DEBUG Processing 439/868 atomic regions from SNP 131455 to 132055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,051 DEBUG Processing 245/716 atomic regions from SNP 73444 to 74045 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,090 DEBUG Processing 111/745 atomic regions from SNP 33110 to 33711 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,171 DEBUG Processing 344/759 atomic regions from SNP 103100 to 103700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,202 DEBUG Processing 440/868 atomic regions from SNP 131755 to 132355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,282 DEBUG Processing 246/716 atomic regions from SNP 73745 to 74346 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,317 DEBUG Processing 112/745 atomic regions from SNP 33411 to 34012 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,423 DEBUG Processing 345/759 atomic regions from SNP 103400 to 104000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,455 DEBUG Processing 441/868 atomic regions from SNP 132055 to 132655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,527 DEBUG Processing 247/716 atomic regions from SNP 74046 to 74647 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,535 DEBUG Processing 113/745 atomic regions from SNP 33712 to 34313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,668 DEBUG Processing 346/759 atomic regions from SNP 103700 to 104300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,709 DEBUG Processing 442/868 atomic regions from SNP 132355 to 132955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,757 DEBUG Processing 114/745 atomic regions from SNP 34013 to 34614 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,763 DEBUG Processing 248/716 atomic regions from SNP 74347 to 74948 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,902 DEBUG Processing 347/759 atomic regions from SNP 104000 to 104600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,961 DEBUG Processing 443/868 atomic regions from SNP 132655 to 133255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,976 DEBUG Processing 115/745 atomic regions from SNP 34314 to 34915 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,996 DEBUG Processing 249/716 atomic regions from SNP 74648 to 75249 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,134 DEBUG Processing 348/759 atomic regions from SNP 104300 to 104900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,196 DEBUG Processing 116/745 atomic regions from SNP 34615 to 35216 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,215 DEBUG Processing 444/868 atomic regions from SNP 132955 to 133555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,224 DEBUG Processing 250/716 atomic regions from SNP 74949 to 75550 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,377 DEBUG Processing 349/759 atomic regions from SNP 104600 to 105200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,416 DEBUG Processing 117/745 atomic regions from SNP 34916 to 35517 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,455 DEBUG Processing 251/716 atomic regions from SNP 75250 to 75851 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,473 DEBUG Processing 445/868 atomic regions from SNP 133255 to 133855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,626 DEBUG Processing 350/759 atomic regions from SNP 104900 to 105500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,633 DEBUG Processing 118/745 atomic regions from SNP 35217 to 35818 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,682 DEBUG Processing 252/716 atomic regions from SNP 75551 to 76152 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,728 DEBUG Processing 446/868 atomic regions from SNP 133555 to 134155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,846 DEBUG Processing 119/745 atomic regions from SNP 35518 to 36119 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,873 DEBUG Processing 351/759 atomic regions from SNP 105200 to 105800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,911 DEBUG Processing 253/716 atomic regions from SNP 75852 to 76453 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,983 DEBUG Processing 447/868 atomic regions from SNP 133855 to 134455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,060 DEBUG Processing 120/745 atomic regions from SNP 35819 to 36420 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,127 DEBUG Processing 352/759 atomic regions from SNP 105500 to 106100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,140 DEBUG Processing 254/716 atomic regions from SNP 76153 to 76754 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,239 DEBUG Processing 448/868 atomic regions from SNP 134155 to 134755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,274 DEBUG Processing 121/745 atomic regions from SNP 36120 to 36721 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,363 DEBUG Processing 353/759 atomic regions from SNP 105800 to 106400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,366 DEBUG Processing 255/716 atomic regions from SNP 76454 to 77055 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,487 DEBUG Processing 122/745 atomic regions from SNP 36421 to 37022 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,494 DEBUG Processing 449/868 atomic regions from SNP 134455 to 135055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,590 DEBUG Processing 256/716 atomic regions from SNP 76755 to 77356 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,601 DEBUG Processing 354/759 atomic regions from SNP 106100 to 106700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,701 DEBUG Processing 123/745 atomic regions from SNP 36722 to 37323 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,744 DEBUG Processing 450/868 atomic regions from SNP 134755 to 135355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,814 DEBUG Processing 257/716 atomic regions from SNP 77056 to 77657 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,840 DEBUG Processing 355/759 atomic regions from SNP 106400 to 107000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,918 DEBUG Processing 124/745 atomic regions from SNP 37023 to 37624 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,996 DEBUG Processing 451/868 atomic regions from SNP 135055 to 135655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,038 DEBUG Processing 258/716 atomic regions from SNP 77357 to 77958 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,080 DEBUG Processing 356/759 atomic regions from SNP 106700 to 107300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,129 DEBUG Processing 125/745 atomic regions from SNP 37324 to 37925 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,244 DEBUG Processing 452/868 atomic regions from SNP 135355 to 135955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,259 DEBUG Processing 259/716 atomic regions from SNP 77658 to 78259 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,321 DEBUG Processing 357/759 atomic regions from SNP 107000 to 107600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,364 DEBUG Processing 126/745 atomic regions from SNP 37625 to 38226 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,475 DEBUG Processing 260/716 atomic regions from SNP 77959 to 78560 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,494 DEBUG Processing 453/868 atomic regions from SNP 135655 to 136255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,538 DEBUG Processing 358/759 atomic regions from SNP 107300 to 107900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,586 DEBUG Processing 127/745 atomic regions from SNP 37926 to 38527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,689 DEBUG Processing 261/716 atomic regions from SNP 78260 to 78861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,748 DEBUG Processing 454/868 atomic regions from SNP 135955 to 136555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,756 DEBUG Processing 359/759 atomic regions from SNP 107600 to 108200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,812 DEBUG Processing 128/745 atomic regions from SNP 38227 to 38828 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,907 DEBUG Processing 262/716 atomic regions from SNP 78561 to 79162 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,975 DEBUG Processing 360/759 atomic regions from SNP 107900 to 108500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,002 DEBUG Processing 455/868 atomic regions from SNP 136255 to 136855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,028 DEBUG Processing 129/745 atomic regions from SNP 38528 to 39129 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,117 DEBUG Processing 263/716 atomic regions from SNP 78862 to 79463 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,188 DEBUG Processing 361/759 atomic regions from SNP 108200 to 108800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,240 DEBUG Processing 130/745 atomic regions from SNP 38829 to 39430 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,251 DEBUG Processing 456/868 atomic regions from SNP 136555 to 137155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,328 DEBUG Processing 264/716 atomic regions from SNP 79163 to 79764 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,403 DEBUG Processing 362/759 atomic regions from SNP 108500 to 109100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,457 DEBUG Processing 131/745 atomic regions from SNP 39130 to 39731 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,504 DEBUG Processing 457/868 atomic regions from SNP 136855 to 137455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,543 DEBUG Processing 265/716 atomic regions from SNP 79464 to 80065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,619 DEBUG Processing 363/759 atomic regions from SNP 108800 to 109400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,669 DEBUG Processing 132/745 atomic regions from SNP 39431 to 40032 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,753 DEBUG Processing 458/868 atomic regions from SNP 137155 to 137755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,758 DEBUG Processing 266/716 atomic regions from SNP 79765 to 80366 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,830 DEBUG Processing 364/759 atomic regions from SNP 109100 to 109700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,880 DEBUG Processing 133/745 atomic regions from SNP 39732 to 40333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,976 DEBUG Processing 267/716 atomic regions from SNP 80066 to 80667 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,008 DEBUG Processing 459/868 atomic regions from SNP 137455 to 138055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,045 DEBUG Processing 365/759 atomic regions from SNP 109400 to 110000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,100 DEBUG Processing 134/745 atomic regions from SNP 40033 to 40634 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,192 DEBUG Processing 268/716 atomic regions from SNP 80367 to 80968 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,260 DEBUG Processing 366/759 atomic regions from SNP 109700 to 110300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,264 DEBUG Processing 460/868 atomic regions from SNP 137755 to 138355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,335 DEBUG Processing 135/745 atomic regions from SNP 40334 to 40935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,411 DEBUG Processing 269/716 atomic regions from SNP 80668 to 81269 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,477 DEBUG Processing 367/759 atomic regions from SNP 110000 to 110600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,524 DEBUG Processing 461/868 atomic regions from SNP 138055 to 138655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,579 DEBUG Processing 136/745 atomic regions from SNP 40635 to 41236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,629 DEBUG Processing 270/716 atomic regions from SNP 80969 to 81570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,691 DEBUG Processing 368/759 atomic regions from SNP 110300 to 110900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,783 DEBUG Processing 462/868 atomic regions from SNP 138355 to 138955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,802 DEBUG Processing 137/745 atomic regions from SNP 40936 to 41537 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,850 DEBUG Processing 271/716 atomic regions from SNP 81270 to 81871 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,908 DEBUG Processing 369/759 atomic regions from SNP 110600 to 111200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,020 DEBUG Processing 138/745 atomic regions from SNP 41237 to 41838 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,046 DEBUG Processing 463/868 atomic regions from SNP 138655 to 139255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,076 DEBUG Processing 272/716 atomic regions from SNP 81571 to 82172 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,132 DEBUG Processing 370/759 atomic regions from SNP 110900 to 111500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,236 DEBUG Processing 139/745 atomic regions from SNP 41538 to 42139 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,299 DEBUG Processing 273/716 atomic regions from SNP 81872 to 82473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,312 DEBUG Processing 464/868 atomic regions from SNP 138955 to 139555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,349 DEBUG Processing 371/759 atomic regions from SNP 111200 to 111800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,452 DEBUG Processing 140/745 atomic regions from SNP 41839 to 42440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,524 DEBUG Processing 274/716 atomic regions from SNP 82173 to 82774 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,567 DEBUG Processing 372/759 atomic regions from SNP 111500 to 112100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,574 DEBUG Processing 465/868 atomic regions from SNP 139255 to 139855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,664 DEBUG Processing 141/745 atomic regions from SNP 42140 to 42741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,747 DEBUG Processing 275/716 atomic regions from SNP 82474 to 83075 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,783 DEBUG Processing 373/759 atomic regions from SNP 111800 to 112400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,829 DEBUG Processing 466/868 atomic regions from SNP 139555 to 140155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,876 DEBUG Processing 142/745 atomic regions from SNP 42441 to 43042 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,970 DEBUG Processing 276/716 atomic regions from SNP 82775 to 83376 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,000 DEBUG Processing 374/759 atomic regions from SNP 112100 to 112700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,083 DEBUG Processing 467/868 atomic regions from SNP 139855 to 140455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,086 DEBUG Processing 143/745 atomic regions from SNP 42742 to 43343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,189 DEBUG Processing 277/716 atomic regions from SNP 83076 to 83677 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,218 DEBUG Processing 375/759 atomic regions from SNP 112400 to 113000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,306 DEBUG Processing 144/745 atomic regions from SNP 43043 to 43644 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,345 DEBUG Processing 468/868 atomic regions from SNP 140155 to 140755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,407 DEBUG Processing 278/716 atomic regions from SNP 83377 to 83978 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,435 DEBUG Processing 376/759 atomic regions from SNP 112700 to 113300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,527 DEBUG Processing 145/745 atomic regions from SNP 43344 to 43945 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,623 DEBUG Processing 469/868 atomic regions from SNP 140455 to 141055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,628 DEBUG Processing 279/716 atomic regions from SNP 83678 to 84279 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,658 DEBUG Processing 377/759 atomic regions from SNP 113000 to 113600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,746 DEBUG Processing 146/745 atomic regions from SNP 43645 to 44246 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,849 DEBUG Processing 280/716 atomic regions from SNP 83979 to 84580 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,877 DEBUG Processing 378/759 atomic regions from SNP 113300 to 113900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,909 DEBUG Processing 470/868 atomic regions from SNP 140755 to 141355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,964 DEBUG Processing 147/745 atomic regions from SNP 43946 to 44547 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,092 DEBUG Processing 281/716 atomic regions from SNP 84280 to 84881 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,092 DEBUG Processing 379/759 atomic regions from SNP 113600 to 114200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,184 DEBUG Processing 148/745 atomic regions from SNP 44247 to 44848 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,202 DEBUG Processing 471/868 atomic regions from SNP 141055 to 141655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,314 DEBUG Processing 380/759 atomic regions from SNP 113900 to 114500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,333 DEBUG Processing 282/716 atomic regions from SNP 84581 to 85182 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,407 DEBUG Processing 149/745 atomic regions from SNP 44548 to 45149 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,495 DEBUG Processing 472/868 atomic regions from SNP 141355 to 141955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,536 DEBUG Processing 381/759 atomic regions from SNP 114200 to 114800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,557 DEBUG Processing 283/716 atomic regions from SNP 84882 to 85483 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,623 DEBUG Processing 150/745 atomic regions from SNP 44849 to 45450 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,751 DEBUG Processing 382/759 atomic regions from SNP 114500 to 115100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,778 DEBUG Processing 284/716 atomic regions from SNP 85183 to 85784 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,787 DEBUG Processing 473/868 atomic regions from SNP 141655 to 142255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,838 DEBUG Processing 151/745 atomic regions from SNP 45150 to 45751 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,969 DEBUG Processing 383/759 atomic regions from SNP 114800 to 115400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,998 DEBUG Processing 285/716 atomic regions from SNP 85484 to 86085 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,058 DEBUG Processing 152/745 atomic regions from SNP 45451 to 46052 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,064 DEBUG Processing 474/868 atomic regions from SNP 141955 to 142555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,192 DEBUG Processing 384/759 atomic regions from SNP 115100 to 115700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,222 DEBUG Processing 286/716 atomic regions from SNP 85785 to 86386 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,274 DEBUG Processing 153/745 atomic regions from SNP 45752 to 46353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,344 DEBUG Processing 475/868 atomic regions from SNP 142255 to 142855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,409 DEBUG Processing 385/759 atomic regions from SNP 115400 to 116000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,443 DEBUG Processing 287/716 atomic regions from SNP 86086 to 86687 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,484 DEBUG Processing 154/745 atomic regions from SNP 46053 to 46654 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,605 DEBUG Processing 476/868 atomic regions from SNP 142555 to 143155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,630 DEBUG Processing 386/759 atomic regions from SNP 115700 to 116300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,665 DEBUG Processing 288/716 atomic regions from SNP 86387 to 86988 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,697 DEBUG Processing 155/745 atomic regions from SNP 46354 to 46955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,857 DEBUG Processing 387/759 atomic regions from SNP 116000 to 116600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,878 DEBUG Processing 477/868 atomic regions from SNP 142855 to 143455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,892 DEBUG Processing 289/716 atomic regions from SNP 86688 to 87289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,909 DEBUG Processing 156/745 atomic regions from SNP 46655 to 47256 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,082 DEBUG Processing 388/759 atomic regions from SNP 116300 to 116900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,116 DEBUG Processing 290/716 atomic regions from SNP 86989 to 87590 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,127 DEBUG Processing 157/745 atomic regions from SNP 46956 to 47557 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,157 DEBUG Processing 478/868 atomic regions from SNP 143155 to 143755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,314 DEBUG Processing 389/759 atomic regions from SNP 116600 to 117200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,357 DEBUG Processing 291/716 atomic regions from SNP 87290 to 87891 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,360 DEBUG Processing 158/745 atomic regions from SNP 47257 to 47858 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,439 DEBUG Processing 479/868 atomic regions from SNP 143455 to 144055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,555 DEBUG Processing 390/759 atomic regions from SNP 116900 to 117500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,604 DEBUG Processing 159/745 atomic regions from SNP 47558 to 48159 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,614 DEBUG Processing 292/716 atomic regions from SNP 87591 to 88192 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,727 DEBUG Processing 480/868 atomic regions from SNP 143755 to 144355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,810 DEBUG Processing 391/759 atomic regions from SNP 117200 to 117800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,840 DEBUG Processing 160/745 atomic regions from SNP 47859 to 48460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,868 DEBUG Processing 293/716 atomic regions from SNP 87892 to 88493 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,022 DEBUG Processing 481/868 atomic regions from SNP 144055 to 144655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,064 DEBUG Processing 392/759 atomic regions from SNP 117500 to 118100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,083 DEBUG Processing 161/745 atomic regions from SNP 48160 to 48761 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,127 DEBUG Processing 294/716 atomic regions from SNP 88193 to 88794 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,310 DEBUG Processing 482/868 atomic regions from SNP 144355 to 144955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,310 DEBUG Processing 393/759 atomic regions from SNP 117800 to 118400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,322 DEBUG Processing 162/745 atomic regions from SNP 48461 to 49062 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,397 DEBUG Processing 295/716 atomic regions from SNP 88494 to 89095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,556 DEBUG Processing 163/745 atomic regions from SNP 48762 to 49363 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,560 DEBUG Processing 394/759 atomic regions from SNP 118100 to 118700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,598 DEBUG Processing 483/868 atomic regions from SNP 144655 to 145255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,637 DEBUG Processing 296/716 atomic regions from SNP 88795 to 89395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,782 DEBUG Processing 164/745 atomic regions from SNP 49063 to 49664 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,808 DEBUG Processing 395/759 atomic regions from SNP 118400 to 119000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,867 DEBUG Processing 297/716 atomic regions from SNP 89095 to 89695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,898 DEBUG Processing 484/868 atomic regions from SNP 144955 to 145555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,001 DEBUG Processing 165/745 atomic regions from SNP 49364 to 49965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,055 DEBUG Processing 396/759 atomic regions from SNP 118700 to 119300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,093 DEBUG Processing 298/716 atomic regions from SNP 89395 to 89995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,193 DEBUG Processing 485/868 atomic regions from SNP 145255 to 145855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,221 DEBUG Processing 166/745 atomic regions from SNP 49665 to 50266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,307 DEBUG Processing 397/759 atomic regions from SNP 119000 to 119600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,319 DEBUG Processing 299/716 atomic regions from SNP 89695 to 90295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,439 DEBUG Processing 167/745 atomic regions from SNP 49966 to 50567 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,469 DEBUG Processing 486/868 atomic regions from SNP 145555 to 146155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,530 DEBUG Processing 398/759 atomic regions from SNP 119300 to 119900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,535 DEBUG Processing 300/716 atomic regions from SNP 89995 to 90595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,655 DEBUG Processing 168/745 atomic regions from SNP 50267 to 50868 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,737 DEBUG Processing 487/868 atomic regions from SNP 145855 to 146455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,752 DEBUG Processing 399/759 atomic regions from SNP 119600 to 120200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,753 DEBUG Processing 301/716 atomic regions from SNP 90295 to 90895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,867 DEBUG Processing 169/745 atomic regions from SNP 50568 to 51169 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,969 DEBUG Processing 400/759 atomic regions from SNP 119900 to 120500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,973 DEBUG Processing 302/716 atomic regions from SNP 90595 to 91195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,024 DEBUG Processing 488/868 atomic regions from SNP 146155 to 146755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,076 DEBUG Processing 170/745 atomic regions from SNP 50869 to 51470 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,187 DEBUG Processing 401/759 atomic regions from SNP 120200 to 120800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,194 DEBUG Processing 303/716 atomic regions from SNP 90895 to 91495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,288 DEBUG Processing 171/745 atomic regions from SNP 51170 to 51771 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,309 DEBUG Processing 489/868 atomic regions from SNP 146455 to 147055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,411 DEBUG Processing 402/759 atomic regions from SNP 120500 to 121100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,422 DEBUG Processing 304/716 atomic regions from SNP 91195 to 91795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,487 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:51:35,504 DEBUG Processing 172/745 atomic regions from SNP 51471 to 52072 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,596 DEBUG Processing 490/868 atomic regions from SNP 146755 to 147355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,637 DEBUG Processing 403/759 atomic regions from SNP 120800 to 121400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,651 DEBUG Processing 305/716 atomic regions from SNP 91495 to 92095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,727 DEBUG Processing 173/745 atomic regions from SNP 51772 to 52373 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,874 DEBUG Processing 306/716 atomic regions from SNP 91795 to 92395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,878 DEBUG Processing 404/759 atomic regions from SNP 121100 to 121700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,904 DEBUG Processing 491/868 atomic regions from SNP 147055 to 147655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,957 DEBUG Processing 174/745 atomic regions from SNP 52073 to 52674 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,093 DEBUG Processing 307/716 atomic regions from SNP 92095 to 92695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,110 DEBUG Processing 405/759 atomic regions from SNP 121400 to 122000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,197 DEBUG Processing 175/745 atomic regions from SNP 52374 to 52975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,210 DEBUG Processing 492/868 atomic regions from SNP 147355 to 147955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,319 DEBUG Processing 308/716 atomic regions from SNP 92395 to 92995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,335 DEBUG Processing 406/759 atomic regions from SNP 121700 to 122300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,442 DEBUG Processing 176/745 atomic regions from SNP 52675 to 53276 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,515 DEBUG Processing 493/868 atomic regions from SNP 147655 to 148255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,550 DEBUG Processing 309/716 atomic regions from SNP 92695 to 93295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,563 DEBUG Processing 407/759 atomic regions from SNP 122000 to 122600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,683 DEBUG Processing 177/745 atomic regions from SNP 52976 to 53577 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,824 DEBUG Processing 310/716 atomic regions from SNP 92995 to 93595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,838 DEBUG Processing 408/759 atomic regions from SNP 122300 to 122900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,854 DEBUG Processing 494/868 atomic regions from SNP 147955 to 148555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,915 DEBUG Processing 178/745 atomic regions from SNP 53277 to 53878 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,052 DEBUG Processing 311/716 atomic regions from SNP 93295 to 93895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,064 DEBUG Processing 409/759 atomic regions from SNP 122600 to 123200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,137 DEBUG Processing 179/745 atomic regions from SNP 53578 to 54179 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,147 DEBUG Processing 495/868 atomic regions from SNP 148255 to 148855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,281 DEBUG Processing 312/716 atomic regions from SNP 93595 to 94195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,291 DEBUG Processing 410/759 atomic regions from SNP 122900 to 123500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,361 DEBUG Processing 180/745 atomic regions from SNP 53879 to 54480 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,449 DEBUG Processing 496/868 atomic regions from SNP 148555 to 149155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,530 DEBUG Processing 411/759 atomic regions from SNP 123200 to 123800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,542 DEBUG Processing 313/716 atomic regions from SNP 93895 to 94495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,595 DEBUG Processing 181/745 atomic regions from SNP 54180 to 54781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,742 DEBUG Processing 497/868 atomic regions from SNP 148855 to 149455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,770 DEBUG Processing 412/759 atomic regions from SNP 123500 to 124100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,802 DEBUG Processing 314/716 atomic regions from SNP 94195 to 94795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,826 DEBUG Processing 182/745 atomic regions from SNP 54481 to 55082 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,013 DEBUG Processing 413/759 atomic regions from SNP 123800 to 124400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,040 DEBUG Processing 498/868 atomic regions from SNP 149155 to 149755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,063 DEBUG Processing 183/745 atomic regions from SNP 54782 to 55383 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,067 DEBUG Processing 315/716 atomic regions from SNP 94495 to 95095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,253 DEBUG Processing 414/759 atomic regions from SNP 124100 to 124700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,306 DEBUG Processing 184/745 atomic regions from SNP 55083 to 55684 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,341 DEBUG Processing 316/716 atomic regions from SNP 94795 to 95395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,349 DEBUG Processing 499/868 atomic regions from SNP 149455 to 150055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,480 DEBUG Processing 415/759 atomic regions from SNP 124400 to 125000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,544 DEBUG Processing 185/745 atomic regions from SNP 55384 to 55985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,612 DEBUG Processing 317/716 atomic regions from SNP 95095 to 95695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,668 DEBUG Processing 500/868 atomic regions from SNP 149755 to 150355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,710 DEBUG Processing 416/759 atomic regions from SNP 124700 to 125300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,783 DEBUG Processing 186/745 atomic regions from SNP 55685 to 56286 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,862 DEBUG Processing 318/716 atomic regions from SNP 95395 to 95995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,935 DEBUG Processing 417/759 atomic regions from SNP 125000 to 125600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,966 DEBUG Processing 501/868 atomic regions from SNP 150055 to 150655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,019 DEBUG Processing 187/745 atomic regions from SNP 55986 to 56587 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,120 DEBUG Processing 319/716 atomic regions from SNP 95695 to 96295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,162 DEBUG Processing 418/759 atomic regions from SNP 125300 to 125900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,251 DEBUG Processing 188/745 atomic regions from SNP 56287 to 56888 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,269 DEBUG Processing 502/868 atomic regions from SNP 150355 to 150955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,367 DEBUG Processing 320/716 atomic regions from SNP 95995 to 96595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,389 DEBUG Processing 419/759 atomic regions from SNP 125600 to 126200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,491 DEBUG Processing 189/745 atomic regions from SNP 56588 to 57189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,568 DEBUG Processing 503/868 atomic regions from SNP 150655 to 151255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,627 DEBUG Processing 420/759 atomic regions from SNP 125900 to 126500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,639 DEBUG Processing 321/716 atomic regions from SNP 96295 to 96895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,726 DEBUG Processing 190/745 atomic regions from SNP 56889 to 57490 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,861 DEBUG Processing 504/868 atomic regions from SNP 150955 to 151555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,866 DEBUG Processing 421/759 atomic regions from SNP 126200 to 126800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,919 DEBUG Processing 322/716 atomic regions from SNP 96595 to 97195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,969 DEBUG Processing 191/745 atomic regions from SNP 57190 to 57791 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,100 DEBUG Processing 422/759 atomic regions from SNP 126500 to 127100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,174 DEBUG Processing 505/868 atomic regions from SNP 151255 to 151855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,201 DEBUG Processing 323/716 atomic regions from SNP 96895 to 97495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,209 DEBUG Processing 192/745 atomic regions from SNP 57491 to 58092 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,343 DEBUG Processing 423/759 atomic regions from SNP 126800 to 127400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,497 DEBUG Processing 193/745 atomic regions from SNP 57792 to 58393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,532 DEBUG Processing 324/716 atomic regions from SNP 97195 to 97795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,547 DEBUG Processing 506/868 atomic regions from SNP 151555 to 152155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,588 DEBUG Processing 424/759 atomic regions from SNP 127100 to 127700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,725 DEBUG Processing 194/745 atomic regions from SNP 58093 to 58694 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,787 DEBUG Processing 325/716 atomic regions from SNP 97495 to 98095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,818 DEBUG Processing 425/759 atomic regions from SNP 127400 to 128000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,860 DEBUG Processing 507/868 atomic regions from SNP 151855 to 152455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,947 DEBUG Processing 195/745 atomic regions from SNP 58394 to 58995 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,037 DEBUG Processing 326/716 atomic regions from SNP 97795 to 98395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,057 DEBUG Processing 426/759 atomic regions from SNP 127700 to 128300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,158 DEBUG Processing 508/868 atomic regions from SNP 152155 to 152755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,169 DEBUG Processing 196/745 atomic regions from SNP 58695 to 59296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,294 DEBUG Processing 427/759 atomic regions from SNP 128000 to 128600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,295 DEBUG Processing 327/716 atomic regions from SNP 98095 to 98695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,396 DEBUG Processing 197/745 atomic regions from SNP 58996 to 59597 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,466 DEBUG Processing 509/868 atomic regions from SNP 152455 to 153055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,536 DEBUG Processing 428/759 atomic regions from SNP 128300 to 128900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,548 DEBUG Processing 328/716 atomic regions from SNP 98395 to 98995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,624 DEBUG Processing 198/745 atomic regions from SNP 59297 to 59898 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,783 DEBUG Processing 510/868 atomic regions from SNP 152755 to 153355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,795 DEBUG Processing 429/759 atomic regions from SNP 128600 to 129200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,804 DEBUG Processing 329/716 atomic regions from SNP 98695 to 99295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,855 DEBUG Processing 199/745 atomic regions from SNP 59598 to 60199 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,052 DEBUG Processing 330/716 atomic regions from SNP 98995 to 99595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,055 DEBUG Processing 430/759 atomic regions from SNP 128900 to 129500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,083 DEBUG Processing 511/868 atomic regions from SNP 153055 to 153655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,086 DEBUG Processing 200/745 atomic regions from SNP 59899 to 60500 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,305 DEBUG Processing 331/716 atomic regions from SNP 99295 to 99895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,325 DEBUG Processing 201/745 atomic regions from SNP 60200 to 60801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,325 DEBUG Processing 431/759 atomic regions from SNP 129200 to 129800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,376 DEBUG Processing 512/868 atomic regions from SNP 153355 to 153955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,544 DEBUG Processing 332/716 atomic regions from SNP 99595 to 100195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,556 DEBUG Processing 202/745 atomic regions from SNP 60501 to 61102 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,581 DEBUG Processing 432/759 atomic regions from SNP 129500 to 130100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,650 DEBUG Processing 513/868 atomic regions from SNP 153655 to 154255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,778 DEBUG Processing 333/716 atomic regions from SNP 99895 to 100495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,786 DEBUG Processing 203/745 atomic regions from SNP 60802 to 61403 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,824 DEBUG Processing 433/759 atomic regions from SNP 129800 to 130400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,917 DEBUG Processing 514/868 atomic regions from SNP 153955 to 154555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,010 DEBUG Processing 334/716 atomic regions from SNP 100195 to 100795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,012 DEBUG Processing 204/745 atomic regions from SNP 61103 to 61704 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,085 DEBUG Processing 434/759 atomic regions from SNP 130100 to 130700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,213 DEBUG Processing 515/868 atomic regions from SNP 154255 to 154855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,237 DEBUG Processing 205/745 atomic regions from SNP 61404 to 62005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,242 DEBUG Processing 335/716 atomic regions from SNP 100495 to 101095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,352 DEBUG Processing 435/759 atomic regions from SNP 130400 to 131000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,457 DEBUG Processing 206/745 atomic regions from SNP 61705 to 62306 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,470 DEBUG Processing 336/716 atomic regions from SNP 100795 to 101395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,508 DEBUG Processing 516/868 atomic regions from SNP 154555 to 155155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,599 DEBUG Processing 436/759 atomic regions from SNP 130700 to 131300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,680 DEBUG Processing 207/745 atomic regions from SNP 62006 to 62607 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,702 DEBUG Processing 337/716 atomic regions from SNP 101095 to 101695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,821 DEBUG Processing 517/868 atomic regions from SNP 154855 to 155455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,848 DEBUG Processing 437/759 atomic regions from SNP 131000 to 131600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,906 DEBUG Processing 208/745 atomic regions from SNP 62307 to 62908 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,935 DEBUG Processing 338/716 atomic regions from SNP 101395 to 101995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,096 DEBUG Processing 438/759 atomic regions from SNP 131300 to 131900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,109 DEBUG Processing 518/868 atomic regions from SNP 155155 to 155755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,133 DEBUG Processing 209/745 atomic regions from SNP 62608 to 63209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,166 DEBUG Processing 339/716 atomic regions from SNP 101695 to 102295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,356 DEBUG Processing 439/759 atomic regions from SNP 131600 to 132200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,362 DEBUG Processing 210/745 atomic regions from SNP 62909 to 63510 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,398 DEBUG Processing 340/716 atomic regions from SNP 101995 to 102595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,400 DEBUG Processing 519/868 atomic regions from SNP 155455 to 156055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,589 DEBUG Processing 211/745 atomic regions from SNP 63210 to 63811 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,619 DEBUG Processing 440/759 atomic regions from SNP 131900 to 132500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,631 DEBUG Processing 341/716 atomic regions from SNP 102295 to 102895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,699 DEBUG Processing 520/868 atomic regions from SNP 155755 to 156355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,811 DEBUG Processing 212/745 atomic regions from SNP 63511 to 64112 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,867 DEBUG Processing 342/716 atomic regions from SNP 102595 to 103195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,872 DEBUG Processing 441/759 atomic regions from SNP 132200 to 132800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,991 DEBUG Processing 521/868 atomic regions from SNP 156055 to 156655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,031 DEBUG Processing 213/745 atomic regions from SNP 63812 to 64413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,110 DEBUG Processing 343/716 atomic regions from SNP 102895 to 103495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,145 DEBUG Processing 442/759 atomic regions from SNP 132500 to 133100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,249 DEBUG Processing 214/745 atomic regions from SNP 64113 to 64714 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,275 DEBUG Processing 522/868 atomic regions from SNP 156355 to 156955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,363 DEBUG Processing 344/716 atomic regions from SNP 103195 to 103795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,407 DEBUG Processing 443/759 atomic regions from SNP 132800 to 133400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,474 DEBUG Processing 215/745 atomic regions from SNP 64414 to 65015 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,572 DEBUG Processing 523/868 atomic regions from SNP 156655 to 157255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,620 DEBUG Processing 345/716 atomic regions from SNP 103495 to 104095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,667 DEBUG Processing 444/759 atomic regions from SNP 133100 to 133700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,695 DEBUG Processing 216/745 atomic regions from SNP 64715 to 65316 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,858 DEBUG Processing 346/716 atomic regions from SNP 103795 to 104395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,866 DEBUG Processing 524/868 atomic regions from SNP 156955 to 157555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,923 DEBUG Processing 217/745 atomic regions from SNP 65016 to 65617 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,929 DEBUG Processing 445/759 atomic regions from SNP 133400 to 134000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,095 DEBUG Processing 347/716 atomic regions from SNP 104095 to 104695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,153 DEBUG Processing 218/745 atomic regions from SNP 65317 to 65918 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,164 DEBUG Processing 525/868 atomic regions from SNP 157255 to 157855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,188 DEBUG Processing 446/759 atomic regions from SNP 133700 to 134300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,328 DEBUG Processing 348/716 atomic regions from SNP 104395 to 104995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,374 DEBUG Processing 219/745 atomic regions from SNP 65618 to 66219 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,453 DEBUG Processing 526/868 atomic regions from SNP 157555 to 158155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,453 DEBUG Processing 447/759 atomic regions from SNP 134000 to 134600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,576 DEBUG Processing 349/716 atomic regions from SNP 104695 to 105295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,597 DEBUG Processing 220/745 atomic regions from SNP 65919 to 66520 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,709 DEBUG Processing 448/759 atomic regions from SNP 134300 to 134900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,731 DEBUG Processing 527/868 atomic regions from SNP 157855 to 158455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,804 DEBUG Processing 350/716 atomic regions from SNP 104995 to 105595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,816 DEBUG Processing 221/745 atomic regions from SNP 66220 to 66821 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,937 DEBUG Processing 449/759 atomic regions from SNP 134600 to 135200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,003 DEBUG Processing 528/868 atomic regions from SNP 158155 to 158755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,033 DEBUG Processing 351/716 atomic regions from SNP 105295 to 105895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,037 DEBUG Processing 222/745 atomic regions from SNP 66521 to 67122 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,166 DEBUG Processing 450/759 atomic regions from SNP 134900 to 135500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,267 DEBUG Processing 223/745 atomic regions from SNP 66822 to 67423 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,268 DEBUG Processing 529/868 atomic regions from SNP 158455 to 159055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,271 DEBUG Processing 352/716 atomic regions from SNP 105595 to 106195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,398 DEBUG Processing 451/759 atomic regions from SNP 135200 to 135800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,500 DEBUG Processing 224/745 atomic regions from SNP 67123 to 67724 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,511 DEBUG Processing 353/716 atomic regions from SNP 105895 to 106495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,538 DEBUG Processing 530/868 atomic regions from SNP 158755 to 159355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,629 DEBUG Processing 452/759 atomic regions from SNP 135500 to 136100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,730 DEBUG Processing 225/745 atomic regions from SNP 67424 to 68025 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,750 DEBUG Processing 354/716 atomic regions from SNP 106195 to 106795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,809 DEBUG Processing 531/868 atomic regions from SNP 159055 to 159655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,859 DEBUG Processing 453/759 atomic regions from SNP 135800 to 136400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,958 DEBUG Processing 226/745 atomic regions from SNP 67725 to 68326 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,988 DEBUG Processing 355/716 atomic regions from SNP 106495 to 107095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,087 DEBUG Processing 532/868 atomic regions from SNP 159355 to 159955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,133 DEBUG Processing 454/759 atomic regions from SNP 136100 to 136700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,187 DEBUG Processing 227/745 atomic regions from SNP 68026 to 68627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,228 DEBUG Processing 356/716 atomic regions from SNP 106795 to 107395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,351 DEBUG Processing 533/868 atomic regions from SNP 159655 to 160255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,415 DEBUG Processing 228/745 atomic regions from SNP 68327 to 68928 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,418 DEBUG Processing 455/759 atomic regions from SNP 136400 to 137000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,460 DEBUG Processing 357/716 atomic regions from SNP 107095 to 107695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,621 DEBUG Processing 534/868 atomic regions from SNP 159955 to 160555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,651 DEBUG Processing 229/745 atomic regions from SNP 68628 to 69229 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,699 DEBUG Processing 456/759 atomic regions from SNP 136700 to 137300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,703 DEBUG Processing 358/716 atomic regions from SNP 107395 to 107995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,883 DEBUG Processing 230/745 atomic regions from SNP 68929 to 69530 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,889 DEBUG Processing 535/868 atomic regions from SNP 160255 to 160855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,944 DEBUG Processing 359/716 atomic regions from SNP 107695 to 108295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,975 DEBUG Processing 457/759 atomic regions from SNP 137000 to 137600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,145 DEBUG Processing 231/745 atomic regions from SNP 69230 to 69831 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,265 DEBUG Processing 536/868 atomic regions from SNP 160555 to 161155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,308 DEBUG Processing 360/716 atomic regions from SNP 107995 to 108595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,347 DEBUG Processing 458/759 atomic regions from SNP 137300 to 137900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,387 DEBUG Processing 232/745 atomic regions from SNP 69531 to 70132 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,580 DEBUG Processing 537/868 atomic regions from SNP 160855 to 161455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,596 DEBUG Processing 361/716 atomic regions from SNP 108295 to 108895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,645 DEBUG Processing 233/745 atomic regions from SNP 69832 to 70433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,665 DEBUG Processing 459/759 atomic regions from SNP 137600 to 138200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,931 DEBUG Processing 234/745 atomic regions from SNP 70133 to 70734 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,934 DEBUG Processing 362/716 atomic regions from SNP 108595 to 109195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,954 DEBUG Processing 538/868 atomic regions from SNP 161155 to 161755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,007 DEBUG Processing 460/759 atomic regions from SNP 137900 to 138500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,171 DEBUG Processing 235/745 atomic regions from SNP 70434 to 71035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,181 DEBUG Processing 363/716 atomic regions from SNP 108895 to 109495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,232 DEBUG Processing 539/868 atomic regions from SNP 161455 to 162055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,286 DEBUG Processing 461/759 atomic regions from SNP 138200 to 138800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,394 DEBUG Processing 236/745 atomic regions from SNP 70735 to 71336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,410 DEBUG Processing 364/716 atomic regions from SNP 109195 to 109795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,506 DEBUG Processing 540/868 atomic regions from SNP 161755 to 162355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,562 DEBUG Processing 462/759 atomic regions from SNP 138500 to 139100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,618 DEBUG Processing 237/745 atomic regions from SNP 71036 to 71637 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,642 DEBUG Processing 365/716 atomic regions from SNP 109495 to 110095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,775 DEBUG Processing 541/868 atomic regions from SNP 162055 to 162655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,834 DEBUG Processing 463/759 atomic regions from SNP 138800 to 139400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,842 DEBUG Processing 238/745 atomic regions from SNP 71337 to 71938 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,862 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:51:50,864 DEBUG chr14: Signal quantile: 0.995. signal threshold: 17. Best RMSEA: 0.050 2025-01-31 09:51:50,874 DEBUG Processing 366/716 atomic regions from SNP 109795 to 110395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,065 DEBUG Processing 239/745 atomic regions from SNP 71638 to 72239 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,066 DEBUG Processing 542/868 atomic regions from SNP 162355 to 162955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,100 DEBUG Processing 464/759 atomic regions from SNP 139100 to 139700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,109 DEBUG Processing 367/716 atomic regions from SNP 110095 to 110695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,294 DEBUG Processing 240/745 atomic regions from SNP 71939 to 72540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,351 DEBUG Processing 368/716 atomic regions from SNP 110395 to 110995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,374 DEBUG Processing 465/759 atomic regions from SNP 139400 to 140000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,376 DEBUG Processing 543/868 atomic regions from SNP 162655 to 163255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,536 DEBUG Processing 241/745 atomic regions from SNP 72240 to 72841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,623 DEBUG Processing 369/716 atomic regions from SNP 110695 to 111295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,686 DEBUG Processing 466/759 atomic regions from SNP 139700 to 140300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,708 DEBUG Processing 544/868 atomic regions from SNP 162955 to 163555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,830 DEBUG Processing 242/745 atomic regions from SNP 72541 to 73141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,912 DEBUG Processing 370/716 atomic regions from SNP 110995 to 111595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,078 DEBUG Processing 545/868 atomic regions from SNP 163255 to 163855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,079 DEBUG Processing 467/759 atomic regions from SNP 140000 to 140600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,202 DEBUG Processing 243/745 atomic regions from SNP 72841 to 73441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,241 DEBUG Processing 371/716 atomic regions from SNP 111295 to 111895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,518 DEBUG Processing 468/759 atomic regions from SNP 140300 to 140900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,536 DEBUG Processing 546/868 atomic regions from SNP 163555 to 164155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,603 DEBUG Processing 244/745 atomic regions from SNP 73141 to 73741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,622 DEBUG Processing 372/716 atomic regions from SNP 111595 to 112195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,773 DEBUG Processing 469/759 atomic regions from SNP 140600 to 141200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,877 DEBUG Processing 245/745 atomic regions from SNP 73441 to 74041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,888 DEBUG Processing 547/868 atomic regions from SNP 163855 to 164455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,895 DEBUG Processing 373/716 atomic regions from SNP 111895 to 112495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,998 DEBUG Processing 470/759 atomic regions from SNP 140900 to 141500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,120 DEBUG Processing 246/745 atomic regions from SNP 73741 to 74341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,137 DEBUG Processing 374/716 atomic regions from SNP 112195 to 112795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,172 DEBUG Processing 548/868 atomic regions from SNP 164155 to 164755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,248 DEBUG Processing 471/759 atomic regions from SNP 141200 to 141800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,362 DEBUG Processing 247/745 atomic regions from SNP 74041 to 74641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,375 DEBUG Processing 375/716 atomic regions from SNP 112495 to 113095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,454 DEBUG Processing 549/868 atomic regions from SNP 164455 to 165055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,504 DEBUG Processing 472/759 atomic regions from SNP 141500 to 142100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,607 DEBUG Processing 248/745 atomic regions from SNP 74341 to 74941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,620 DEBUG Processing 376/716 atomic regions from SNP 112795 to 113395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,734 DEBUG Processing 550/868 atomic regions from SNP 164755 to 165355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,754 DEBUG Processing 473/759 atomic regions from SNP 141800 to 142400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,868 DEBUG Processing 249/745 atomic regions from SNP 74641 to 75241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,876 DEBUG Processing 377/716 atomic regions from SNP 113095 to 113695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,021 DEBUG Processing 474/759 atomic regions from SNP 142100 to 142700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,024 DEBUG chr14 total SNP count: 203871 2025-01-31 09:51:54,024 DEBUG chr14 length: 124902244 2025-01-31 09:51:54,024 DEBUG ----------------------------------------- 2025-01-31 09:51:54,024 INFO Processing SNPs in chr14 2025-01-31 09:51:54,033 DEBUG Processing 551/868 atomic regions from SNP 165055 to 165655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,110 DEBUG Processing 378/716 atomic regions from SNP 113395 to 113995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,117 DEBUG Processing 250/745 atomic regions from SNP 74941 to 75541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,279 DEBUG Processing 475/759 atomic regions from SNP 142400 to 143000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,324 DEBUG Processing 552/868 atomic regions from SNP 165355 to 165955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,352 DEBUG Processing 379/716 atomic regions from SNP 113695 to 114295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,362 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 197), (197, 203871)] 2025-01-31 09:51:54,376 DEBUG Processing 251/745 atomic regions from SNP 75241 to 75841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,452 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:54,477 DEBUG Segmenting atomic regions: 2025-01-31 09:51:54,525 DEBUG Processing 476/759 atomic regions from SNP 142700 to 143300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,567 DEBUG Processing 1/1 atomic regions from SNP 0 to 196 for chr14 (subchromosome 1 of 2). 2025-01-31 09:51:54,580 DEBUG Unique SNPs positions in subchromosome 1: 197 2025-01-31 09:51:54,581 DEBUG Subchromosome time: 0.12817879696376622, subchromosome SNPs: 197 2025-01-31 09:51:54,609 DEBUG Processing 553/868 atomic regions from SNP 165655 to 166255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,614 DEBUG Processing 380/716 atomic regions from SNP 113995 to 114595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,626 DEBUG Processing 252/745 atomic regions from SNP 75541 to 76141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,639 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:54,765 DEBUG Processing 477/759 atomic regions from SNP 143000 to 143600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,861 DEBUG Processing 253/745 atomic regions from SNP 75841 to 76441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,871 DEBUG Processing 381/716 atomic regions from SNP 114295 to 114895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,886 DEBUG Processing 554/868 atomic regions from SNP 165955 to 166555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,988 DEBUG Processing 478/759 atomic regions from SNP 143300 to 143900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,100 DEBUG Processing 254/745 atomic regions from SNP 76141 to 76741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,114 DEBUG Processing 382/716 atomic regions from SNP 114595 to 115195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,169 DEBUG Processing 555/868 atomic regions from SNP 166255 to 166855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,220 DEBUG Processing 479/759 atomic regions from SNP 143600 to 144200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,337 DEBUG Processing 255/745 atomic regions from SNP 76441 to 77041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,354 DEBUG Processing 383/716 atomic regions from SNP 114895 to 115495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,448 DEBUG Processing 556/868 atomic regions from SNP 166555 to 167155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,457 DEBUG Processing 480/759 atomic regions from SNP 143900 to 144500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,570 DEBUG Processing 256/745 atomic regions from SNP 76741 to 77341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,595 DEBUG Processing 384/716 atomic regions from SNP 115195 to 115795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,700 DEBUG Processing 481/759 atomic regions from SNP 144200 to 144800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,740 DEBUG Processing 557/868 atomic regions from SNP 166855 to 167455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,823 DEBUG Processing 257/745 atomic regions from SNP 77041 to 77641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,828 DEBUG Processing 385/716 atomic regions from SNP 115495 to 116095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,954 DEBUG Processing 482/759 atomic regions from SNP 144500 to 145100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,011 DEBUG Processing 558/868 atomic regions from SNP 167155 to 167755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,042 DEBUG Processing 258/745 atomic regions from SNP 77341 to 77941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,052 DEBUG Processing 386/716 atomic regions from SNP 115795 to 116395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,206 DEBUG Processing 483/759 atomic regions from SNP 144800 to 145400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,276 DEBUG Processing 559/868 atomic regions from SNP 167455 to 168055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,277 DEBUG Processing 259/745 atomic regions from SNP 77641 to 78241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,291 DEBUG Processing 387/716 atomic regions from SNP 116095 to 116695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,452 DEBUG Processing 484/759 atomic regions from SNP 145100 to 145700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,504 DEBUG Processing 260/745 atomic regions from SNP 77941 to 78541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,524 DEBUG Processing 388/716 atomic regions from SNP 116395 to 116995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,538 DEBUG Processing 560/868 atomic regions from SNP 167755 to 168355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,707 DEBUG Processing 485/759 atomic regions from SNP 145400 to 146000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,729 DEBUG Processing 261/745 atomic regions from SNP 78241 to 78841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,754 DEBUG Processing 389/716 atomic regions from SNP 116695 to 117295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,795 DEBUG Processing 561/868 atomic regions from SNP 168055 to 168655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,949 DEBUG Processing 486/759 atomic regions from SNP 145700 to 146300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,952 DEBUG Processing 262/745 atomic regions from SNP 78541 to 79141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,983 DEBUG Processing 390/716 atomic regions from SNP 116995 to 117595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,066 DEBUG Processing 562/868 atomic regions from SNP 168355 to 168955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,180 DEBUG Processing 263/745 atomic regions from SNP 78841 to 79441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,194 DEBUG Processing 487/759 atomic regions from SNP 146000 to 146600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,218 DEBUG Processing 391/716 atomic regions from SNP 117295 to 117895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,333 DEBUG Processing 563/868 atomic regions from SNP 168655 to 169255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,412 DEBUG Processing 264/745 atomic regions from SNP 79141 to 79741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,434 DEBUG Processing 488/759 atomic regions from SNP 146300 to 146900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,456 DEBUG Processing 392/716 atomic regions from SNP 117595 to 118195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,600 DEBUG Processing 564/868 atomic regions from SNP 168955 to 169555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,642 DEBUG Processing 265/745 atomic regions from SNP 79441 to 80041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,674 DEBUG Processing 489/759 atomic regions from SNP 146600 to 147200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,694 DEBUG Processing 393/716 atomic regions from SNP 117895 to 118495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,870 DEBUG Processing 565/868 atomic regions from SNP 169255 to 169855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,870 DEBUG Processing 266/745 atomic regions from SNP 79741 to 80341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,912 DEBUG Processing 490/759 atomic regions from SNP 146900 to 147500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,931 DEBUG Processing 394/716 atomic regions from SNP 118195 to 118795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,102 DEBUG Processing 267/745 atomic regions from SNP 80041 to 80641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,133 DEBUG Processing 566/868 atomic regions from SNP 169555 to 170155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,157 DEBUG Processing 491/759 atomic regions from SNP 147200 to 147800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,165 DEBUG Processing 395/716 atomic regions from SNP 118495 to 119095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,329 DEBUG Processing 268/745 atomic regions from SNP 80341 to 80941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,402 DEBUG Processing 567/868 atomic regions from SNP 169855 to 170455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,408 DEBUG Processing 396/716 atomic regions from SNP 118795 to 119395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,411 DEBUG Processing 492/759 atomic regions from SNP 147500 to 148100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,556 DEBUG Processing 269/745 atomic regions from SNP 80641 to 81241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,649 DEBUG Processing 397/716 atomic regions from SNP 119095 to 119695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,654 DEBUG Processing 493/759 atomic regions from SNP 147800 to 148400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,665 DEBUG Processing 568/868 atomic regions from SNP 170155 to 170755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,779 DEBUG Processing 270/745 atomic regions from SNP 80941 to 81541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,884 DEBUG Processing 398/716 atomic regions from SNP 119395 to 119995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,885 DEBUG Processing 494/759 atomic regions from SNP 148100 to 148700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,928 DEBUG Processing 569/868 atomic regions from SNP 170455 to 171055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,002 DEBUG Processing 271/745 atomic regions from SNP 81241 to 81841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,108 DEBUG Processing 399/716 atomic regions from SNP 119695 to 120295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,132 DEBUG Processing 495/759 atomic regions from SNP 148400 to 149000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,197 DEBUG Processing 570/868 atomic regions from SNP 170755 to 171355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,224 DEBUG Processing 272/745 atomic regions from SNP 81541 to 82141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,331 DEBUG Processing 400/716 atomic regions from SNP 119995 to 120595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,386 DEBUG Processing 496/759 atomic regions from SNP 148700 to 149300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,447 DEBUG Processing 273/745 atomic regions from SNP 81841 to 82441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,456 DEBUG Processing 571/868 atomic regions from SNP 171055 to 171655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,554 DEBUG Processing 401/716 atomic regions from SNP 120295 to 120895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,613 DEBUG Processing 497/759 atomic regions from SNP 149000 to 149600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,671 DEBUG Processing 274/745 atomic regions from SNP 82141 to 82741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,725 DEBUG Processing 572/868 atomic regions from SNP 171355 to 171955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,779 DEBUG Processing 402/716 atomic regions from SNP 120595 to 121195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,841 DEBUG Processing 498/759 atomic regions from SNP 149300 to 149900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,905 DEBUG Processing 275/745 atomic regions from SNP 82441 to 83041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,993 DEBUG Processing 573/868 atomic regions from SNP 171655 to 172255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,004 DEBUG Processing 403/716 atomic regions from SNP 120895 to 121495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,061 DEBUG Processing 499/759 atomic regions from SNP 149600 to 150200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,131 DEBUG Processing 276/745 atomic regions from SNP 82741 to 83341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,237 DEBUG Processing 404/716 atomic regions from SNP 121195 to 121795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,260 DEBUG Processing 574/868 atomic regions from SNP 171955 to 172555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,289 DEBUG Processing 500/759 atomic regions from SNP 149900 to 150500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,353 DEBUG Processing 277/745 atomic regions from SNP 83041 to 83641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,472 DEBUG Processing 405/716 atomic regions from SNP 121495 to 122095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,521 DEBUG Processing 575/868 atomic regions from SNP 172255 to 172855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,522 DEBUG Processing 501/759 atomic regions from SNP 150200 to 150800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,579 DEBUG Processing 278/745 atomic regions from SNP 83341 to 83941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,698 DEBUG Processing 406/716 atomic regions from SNP 121795 to 122395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,752 DEBUG Processing 502/759 atomic regions from SNP 150500 to 151100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,803 DEBUG Processing 576/868 atomic regions from SNP 172555 to 173155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,811 DEBUG Processing 279/745 atomic regions from SNP 83641 to 84241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,926 DEBUG Processing 407/716 atomic regions from SNP 122095 to 122695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,979 DEBUG Processing 503/759 atomic regions from SNP 150800 to 151400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,034 DEBUG Processing 280/745 atomic regions from SNP 83941 to 84541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,081 DEBUG Processing 577/868 atomic regions from SNP 172855 to 173455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,158 DEBUG Processing 408/716 atomic regions from SNP 122395 to 122995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,206 DEBUG Processing 504/759 atomic regions from SNP 151100 to 151700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,259 DEBUG Processing 281/745 atomic regions from SNP 84241 to 84841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,351 DEBUG Processing 578/868 atomic regions from SNP 173155 to 173755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,390 DEBUG Processing 409/716 atomic regions from SNP 122695 to 123295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,451 DEBUG Processing 505/759 atomic regions from SNP 151400 to 152000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,490 DEBUG Processing 282/745 atomic regions from SNP 84541 to 85141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,619 DEBUG Processing 410/716 atomic regions from SNP 122995 to 123595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,624 DEBUG Processing 579/868 atomic regions from SNP 173455 to 174055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,700 DEBUG Processing 506/759 atomic regions from SNP 151700 to 152300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,722 DEBUG Processing 283/745 atomic regions from SNP 84841 to 85441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,853 DEBUG Processing 411/716 atomic regions from SNP 123295 to 123895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,904 DEBUG Processing 580/868 atomic regions from SNP 173755 to 174355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,939 DEBUG Processing 507/759 atomic regions from SNP 152000 to 152600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,953 DEBUG Processing 284/745 atomic regions from SNP 85141 to 85741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,076 DEBUG Processing 412/716 atomic regions from SNP 123595 to 124195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,169 DEBUG Processing 508/759 atomic regions from SNP 152300 to 152900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,170 DEBUG Processing 581/868 atomic regions from SNP 174055 to 174655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,179 DEBUG Processing 285/745 atomic regions from SNP 85441 to 86041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,296 DEBUG Processing 413/716 atomic regions from SNP 123895 to 124495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,401 DEBUG Processing 509/759 atomic regions from SNP 152600 to 153200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,410 DEBUG Processing 286/745 atomic regions from SNP 85741 to 86341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,432 DEBUG Processing 582/868 atomic regions from SNP 174355 to 174955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,517 DEBUG Processing 414/716 atomic regions from SNP 124195 to 124795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,632 DEBUG Processing 510/759 atomic regions from SNP 152900 to 153500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,638 DEBUG Processing 287/745 atomic regions from SNP 86041 to 86641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,696 DEBUG Processing 583/868 atomic regions from SNP 174655 to 175255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,745 DEBUG Processing 415/716 atomic regions from SNP 124495 to 125095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,865 DEBUG Processing 511/759 atomic regions from SNP 153200 to 153800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,868 DEBUG Processing 288/745 atomic regions from SNP 86341 to 86941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,949 DEBUG Processing 584/868 atomic regions from SNP 174955 to 175555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,971 DEBUG Processing 416/716 atomic regions from SNP 124795 to 125395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,093 DEBUG Processing 512/759 atomic regions from SNP 153500 to 154100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,093 DEBUG Processing 289/745 atomic regions from SNP 86641 to 87241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,201 DEBUG Processing 417/716 atomic regions from SNP 125095 to 125695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,209 DEBUG Processing 585/868 atomic regions from SNP 175255 to 175855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,317 DEBUG Processing 290/745 atomic regions from SNP 86941 to 87541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,322 DEBUG Processing 513/759 atomic regions from SNP 153800 to 154400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,432 DEBUG Processing 418/716 atomic regions from SNP 125395 to 125995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,464 DEBUG Processing 586/868 atomic regions from SNP 175555 to 176155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,542 DEBUG Processing 291/745 atomic regions from SNP 87241 to 87841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,552 DEBUG Processing 514/759 atomic regions from SNP 154100 to 154700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,660 DEBUG Processing 419/716 atomic regions from SNP 125695 to 126295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,717 DEBUG Processing 587/868 atomic regions from SNP 175855 to 176455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,764 DEBUG Processing 292/745 atomic regions from SNP 87541 to 88141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,776 DEBUG Processing 515/759 atomic regions from SNP 154400 to 155000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,891 DEBUG Processing 420/716 atomic regions from SNP 125995 to 126595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,967 DEBUG Processing 588/868 atomic regions from SNP 176155 to 176755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,986 DEBUG Processing 293/745 atomic regions from SNP 87841 to 88441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,000 DEBUG Processing 516/759 atomic regions from SNP 154700 to 155300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,132 DEBUG Processing 421/716 atomic regions from SNP 126295 to 126895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,210 DEBUG Processing 294/745 atomic regions from SNP 88141 to 88741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,221 DEBUG Processing 589/868 atomic regions from SNP 176455 to 177055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,228 DEBUG Processing 517/759 atomic regions from SNP 155000 to 155600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,363 DEBUG Processing 422/716 atomic regions from SNP 126595 to 127195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,440 DEBUG Processing 295/745 atomic regions from SNP 88441 to 89041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,459 DEBUG Processing 518/759 atomic regions from SNP 155300 to 155900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,485 DEBUG Processing 590/868 atomic regions from SNP 176755 to 177355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,596 DEBUG Processing 423/716 atomic regions from SNP 126895 to 127495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,666 DEBUG Processing 296/745 atomic regions from SNP 88741 to 89341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,690 DEBUG Processing 519/759 atomic regions from SNP 155600 to 156200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,752 DEBUG Processing 591/868 atomic regions from SNP 177055 to 177655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,843 DEBUG Processing 424/716 atomic regions from SNP 127195 to 127795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,911 DEBUG Processing 297/745 atomic regions from SNP 89041 to 89641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,926 DEBUG Processing 520/759 atomic regions from SNP 155900 to 156500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,014 DEBUG Processing 592/868 atomic regions from SNP 177355 to 177955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,072 DEBUG Processing 425/716 atomic regions from SNP 127495 to 128095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,138 DEBUG Processing 298/745 atomic regions from SNP 89341 to 89941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,159 DEBUG Processing 521/759 atomic regions from SNP 156200 to 156800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,275 DEBUG Processing 593/868 atomic regions from SNP 177655 to 178255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,310 DEBUG Processing 426/716 atomic regions from SNP 127795 to 128395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,369 DEBUG Processing 299/745 atomic regions from SNP 89641 to 90241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,408 DEBUG Processing 522/759 atomic regions from SNP 156500 to 157100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,541 DEBUG Processing 594/868 atomic regions from SNP 177955 to 178555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,545 DEBUG Processing 427/716 atomic regions from SNP 128095 to 128695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,592 DEBUG Processing 300/745 atomic regions from SNP 89941 to 90541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,663 DEBUG Processing 523/759 atomic regions from SNP 156800 to 157400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,790 DEBUG Processing 428/716 atomic regions from SNP 128395 to 128995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,808 DEBUG Processing 595/868 atomic regions from SNP 178255 to 178855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,823 DEBUG Processing 301/745 atomic regions from SNP 90241 to 90841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,909 DEBUG Processing 524/759 atomic regions from SNP 157100 to 157700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,049 DEBUG Processing 429/716 atomic regions from SNP 128695 to 129295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,052 DEBUG Processing 302/745 atomic regions from SNP 90541 to 91141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,079 DEBUG Processing 596/868 atomic regions from SNP 178555 to 179155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,137 DEBUG Processing 525/759 atomic regions from SNP 157400 to 158000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,284 DEBUG Processing 303/745 atomic regions from SNP 90841 to 91441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,301 DEBUG Processing 430/716 atomic regions from SNP 128995 to 129595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,363 DEBUG Processing 597/868 atomic regions from SNP 178855 to 179455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,394 DEBUG Processing 526/759 atomic regions from SNP 157700 to 158300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,538 DEBUG Processing 304/745 atomic regions from SNP 91141 to 91741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,575 DEBUG Processing 431/716 atomic regions from SNP 129295 to 129895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,626 DEBUG Processing 527/759 atomic regions from SNP 158000 to 158600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,637 DEBUG Processing 598/868 atomic regions from SNP 179155 to 179755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,763 DEBUG Processing 305/745 atomic regions from SNP 91441 to 92041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,824 DEBUG Processing 432/716 atomic regions from SNP 129595 to 130195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,847 DEBUG Processing 528/759 atomic regions from SNP 158300 to 158900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,903 DEBUG Processing 599/868 atomic regions from SNP 179455 to 180055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,986 DEBUG Processing 306/745 atomic regions from SNP 91741 to 92341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,071 DEBUG Processing 529/759 atomic regions from SNP 158600 to 159200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,078 DEBUG Processing 433/716 atomic regions from SNP 129895 to 130495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,182 DEBUG Processing 600/868 atomic regions from SNP 179755 to 180355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,232 DEBUG Processing 307/745 atomic regions from SNP 92041 to 92641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,341 DEBUG Processing 530/759 atomic regions from SNP 158900 to 159500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,376 DEBUG Processing 434/716 atomic regions from SNP 130195 to 130795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,546 DEBUG Processing 601/868 atomic regions from SNP 180055 to 180655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,560 DEBUG Processing 308/745 atomic regions from SNP 92341 to 92941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,746 DEBUG Processing 531/759 atomic regions from SNP 159200 to 159800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,829 DEBUG Processing 435/716 atomic regions from SNP 130495 to 131095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,885 DEBUG Processing 309/745 atomic regions from SNP 92641 to 93241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,941 DEBUG Processing 602/868 atomic regions from SNP 180355 to 180955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,118 DEBUG Processing 532/759 atomic regions from SNP 159500 to 160100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,271 DEBUG Processing 436/716 atomic regions from SNP 130795 to 131395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,280 DEBUG Processing 310/745 atomic regions from SNP 92941 to 93541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,373 DEBUG Processing 603/868 atomic regions from SNP 180655 to 181255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,513 DEBUG Processing 533/759 atomic regions from SNP 159800 to 160400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,720 DEBUG Processing 437/716 atomic regions from SNP 131095 to 131695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,737 DEBUG Processing 311/745 atomic regions from SNP 93241 to 93841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,860 DEBUG Processing 604/868 atomic regions from SNP 180955 to 181555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,000 DEBUG Processing 534/759 atomic regions from SNP 160100 to 160700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,179 DEBUG Processing 312/745 atomic regions from SNP 93541 to 94141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,214 DEBUG Processing 438/716 atomic regions from SNP 131395 to 131995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,344 DEBUG Processing 605/868 atomic regions from SNP 181255 to 181855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,482 DEBUG Processing 535/759 atomic regions from SNP 160400 to 161000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,708 DEBUG Processing 313/745 atomic regions from SNP 93841 to 94441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,726 DEBUG Processing 439/716 atomic regions from SNP 131695 to 132295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,901 DEBUG Processing 606/868 atomic regions from SNP 181555 to 182155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,023 DEBUG Processing 536/759 atomic regions from SNP 160700 to 161300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,324 DEBUG Processing 440/716 atomic regions from SNP 131995 to 132595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,324 DEBUG Processing 314/745 atomic regions from SNP 94141 to 94741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,480 DEBUG Processing 607/868 atomic regions from SNP 181855 to 182455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,504 DEBUG Processing 537/759 atomic regions from SNP 161000 to 161600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,737 DEBUG Processing 315/745 atomic regions from SNP 94441 to 95041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,775 DEBUG Processing 441/716 atomic regions from SNP 132295 to 132895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,910 DEBUG Processing 608/868 atomic regions from SNP 182155 to 182755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,938 DEBUG Processing 538/759 atomic regions from SNP 161300 to 161900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,042 DEBUG Processing 316/745 atomic regions from SNP 94741 to 95341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,067 DEBUG Processing 442/716 atomic regions from SNP 132595 to 133195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,292 DEBUG Processing 609/868 atomic regions from SNP 182455 to 183055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,330 DEBUG Processing 539/759 atomic regions from SNP 161600 to 162200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,393 DEBUG Processing 317/745 atomic regions from SNP 95041 to 95641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,453 DEBUG Processing 443/716 atomic regions from SNP 132895 to 133495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,776 DEBUG Processing 610/868 atomic regions from SNP 182755 to 183355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,808 DEBUG Processing 540/759 atomic regions from SNP 161900 to 162500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,841 DEBUG Processing 318/745 atomic regions from SNP 95341 to 95941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,921 DEBUG Processing 444/716 atomic regions from SNP 133195 to 133795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,283 DEBUG Processing 541/759 atomic regions from SNP 162200 to 162800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,286 DEBUG Processing 611/868 atomic regions from SNP 183055 to 183655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,322 DEBUG Processing 319/745 atomic regions from SNP 95641 to 96241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,381 DEBUG Processing 445/716 atomic regions from SNP 133495 to 134095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,726 DEBUG Processing 542/759 atomic regions from SNP 162500 to 163100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,750 DEBUG Processing 612/868 atomic regions from SNP 183355 to 183955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,765 DEBUG Processing 320/745 atomic regions from SNP 95941 to 96541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,818 DEBUG Processing 446/716 atomic regions from SNP 133795 to 134395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,105 DEBUG Processing 543/759 atomic regions from SNP 162800 to 163400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,156 DEBUG Processing 613/868 atomic regions from SNP 183655 to 184255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,196 DEBUG Processing 321/745 atomic regions from SNP 96241 to 96841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,247 DEBUG Processing 447/716 atomic regions from SNP 134095 to 134695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,516 DEBUG Processing 544/759 atomic regions from SNP 163100 to 163700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,624 DEBUG Processing 322/745 atomic regions from SNP 96541 to 97141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,633 DEBUG Processing 448/716 atomic regions from SNP 134395 to 134995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,644 DEBUG Processing 614/868 atomic regions from SNP 183955 to 184555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,927 DEBUG Processing 545/759 atomic regions from SNP 163400 to 164000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,959 DEBUG Processing 323/745 atomic regions from SNP 96841 to 97441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,021 DEBUG Processing 449/716 atomic regions from SNP 134695 to 135295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,055 DEBUG Processing 615/868 atomic regions from SNP 184255 to 184855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,256 DEBUG Processing 546/759 atomic regions from SNP 163700 to 164300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,281 DEBUG Processing 324/745 atomic regions from SNP 97141 to 97741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,472 DEBUG Processing 616/868 atomic regions from SNP 184555 to 185155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,475 DEBUG Processing 450/716 atomic regions from SNP 134995 to 135595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,653 DEBUG Processing 325/745 atomic regions from SNP 97441 to 98041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,655 DEBUG Processing 547/759 atomic regions from SNP 164000 to 164600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,937 DEBUG Processing 451/716 atomic regions from SNP 135295 to 135895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,958 DEBUG Processing 617/868 atomic regions from SNP 184855 to 185455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,142 DEBUG Processing 326/745 atomic regions from SNP 97741 to 98341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,176 DEBUG Processing 548/759 atomic regions from SNP 164300 to 164900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,497 DEBUG Processing 452/716 atomic regions from SNP 135595 to 136195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,499 DEBUG Processing 618/868 atomic regions from SNP 185155 to 185755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,614 DEBUG Processing 549/759 atomic regions from SNP 164600 to 165200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,615 DEBUG Processing 327/745 atomic regions from SNP 98041 to 98641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,926 DEBUG Processing 453/716 atomic regions from SNP 135895 to 136495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,938 DEBUG Processing 619/868 atomic regions from SNP 185455 to 186055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,033 DEBUG Processing 328/745 atomic regions from SNP 98341 to 98941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,055 DEBUG Processing 550/759 atomic regions from SNP 164900 to 165500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,367 DEBUG Processing 454/716 atomic regions from SNP 136195 to 136795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,404 DEBUG Processing 620/868 atomic regions from SNP 185755 to 186355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,456 DEBUG Processing 329/745 atomic regions from SNP 98641 to 99241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,561 DEBUG Processing 551/759 atomic regions from SNP 165200 to 165800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,900 DEBUG Processing 455/716 atomic regions from SNP 136495 to 137095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,941 DEBUG Processing 621/868 atomic regions from SNP 186055 to 186655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,955 DEBUG Processing 330/745 atomic regions from SNP 98941 to 99541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,069 DEBUG Processing 552/759 atomic regions from SNP 165500 to 166100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,343 DEBUG Processing 456/716 atomic regions from SNP 136795 to 137395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,387 DEBUG Processing 331/745 atomic regions from SNP 99241 to 99841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,536 DEBUG Processing 622/868 atomic regions from SNP 186355 to 186955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,861 DEBUG Processing 553/759 atomic regions from SNP 165800 to 166400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,111 DEBUG Processing 332/745 atomic regions from SNP 99541 to 100141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,126 DEBUG Processing 457/716 atomic regions from SNP 137095 to 137695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,158 DEBUG Processing 623/868 atomic regions from SNP 186655 to 187255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,368 DEBUG Processing 554/759 atomic regions from SNP 166100 to 166700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,596 DEBUG Processing 458/716 atomic regions from SNP 137395 to 137995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,625 DEBUG Processing 333/745 atomic regions from SNP 99841 to 100441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,665 DEBUG Processing 624/868 atomic regions from SNP 186955 to 187555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,855 DEBUG Processing 555/759 atomic regions from SNP 166400 to 167000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,151 DEBUG Processing 459/716 atomic regions from SNP 137695 to 138295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,165 DEBUG Processing 334/745 atomic regions from SNP 100141 to 100741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,288 DEBUG Processing 625/868 atomic regions from SNP 187255 to 187855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,337 DEBUG Processing 556/759 atomic regions from SNP 166700 to 167300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,582 DEBUG Processing 460/716 atomic regions from SNP 137995 to 138595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,593 DEBUG Processing 335/745 atomic regions from SNP 100441 to 101041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,772 DEBUG Processing 557/759 atomic regions from SNP 167000 to 167600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,778 DEBUG Processing 626/868 atomic regions from SNP 187555 to 188155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,933 DEBUG Processing 461/716 atomic regions from SNP 138295 to 138895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,981 DEBUG Processing 336/745 atomic regions from SNP 100741 to 101341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,161 DEBUG Processing 558/759 atomic regions from SNP 167300 to 167900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,252 DEBUG Processing 627/868 atomic regions from SNP 187855 to 188455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,338 DEBUG Processing 462/716 atomic regions from SNP 138595 to 139195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,394 DEBUG Processing 337/745 atomic regions from SNP 101041 to 101641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,563 DEBUG Processing 559/759 atomic regions from SNP 167600 to 168200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,700 DEBUG Processing 628/868 atomic regions from SNP 188155 to 188755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,748 DEBUG Processing 463/716 atomic regions from SNP 138895 to 139495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,784 DEBUG Processing 338/745 atomic regions from SNP 101341 to 101941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,955 DEBUG Processing 560/759 atomic regions from SNP 167900 to 168500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,092 DEBUG Processing 464/716 atomic regions from SNP 139195 to 139795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,096 DEBUG Processing 629/868 atomic regions from SNP 188455 to 189055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,150 DEBUG Processing 339/745 atomic regions from SNP 101641 to 102241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,323 DEBUG Processing 561/759 atomic regions from SNP 168200 to 168800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,460 DEBUG Processing 465/716 atomic regions from SNP 139495 to 140095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,475 DEBUG Processing 630/868 atomic regions from SNP 188755 to 189355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,500 DEBUG Processing 340/745 atomic regions from SNP 101941 to 102541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,587 DEBUG Processing 562/759 atomic regions from SNP 168500 to 169100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,850 DEBUG Processing 466/716 atomic regions from SNP 139795 to 140395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,851 DEBUG Processing 341/745 atomic regions from SNP 102241 to 102841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,901 DEBUG Processing 631/868 atomic regions from SNP 189055 to 189655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,959 DEBUG Processing 563/759 atomic regions from SNP 168800 to 169400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,026 DEBUG Segmenting atomic regions: 2025-01-31 09:52:22,116 DEBUG Processing 467/716 atomic regions from SNP 140095 to 140695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,129 DEBUG Processing 342/745 atomic regions from SNP 102541 to 103141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,133 DEBUG Processing 1/677 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,230 DEBUG Processing 632/868 atomic regions from SNP 189355 to 189955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,288 DEBUG Processing 564/759 atomic regions from SNP 169100 to 169700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,402 DEBUG Processing 343/745 atomic regions from SNP 102841 to 103441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,411 DEBUG Processing 468/716 atomic regions from SNP 140395 to 140995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,434 DEBUG Processing 2/677 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,602 DEBUG Processing 633/868 atomic regions from SNP 189655 to 190255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,671 DEBUG Processing 565/759 atomic regions from SNP 169400 to 170000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,768 DEBUG Processing 344/745 atomic regions from SNP 103141 to 103741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,772 DEBUG Processing 469/716 atomic regions from SNP 140695 to 141295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,808 DEBUG Processing 3/677 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,923 DEBUG Processing 634/868 atomic regions from SNP 189955 to 190555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,925 DEBUG Processing 566/759 atomic regions from SNP 169700 to 170300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,034 DEBUG Processing 345/745 atomic regions from SNP 103441 to 104041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,036 DEBUG Processing 470/716 atomic regions from SNP 140995 to 141595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,098 DEBUG Processing 4/677 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,172 DEBUG Processing 567/759 atomic regions from SNP 170000 to 170600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,203 DEBUG Processing 635/868 atomic regions from SNP 190255 to 190855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,257 DEBUG Processing 346/745 atomic regions from SNP 103741 to 104341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,264 DEBUG Processing 471/716 atomic regions from SNP 141295 to 141895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,349 DEBUG Processing 5/677 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,392 DEBUG Processing 568/759 atomic regions from SNP 170300 to 170900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,464 DEBUG Processing 636/868 atomic regions from SNP 190555 to 191155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,477 DEBUG Processing 347/745 atomic regions from SNP 104041 to 104641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,490 DEBUG Processing 472/716 atomic regions from SNP 141595 to 142195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,633 DEBUG Processing 569/759 atomic regions from SNP 170600 to 171200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,640 DEBUG Processing 6/677 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,779 DEBUG Processing 348/745 atomic regions from SNP 104341 to 104941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,787 DEBUG Processing 637/868 atomic regions from SNP 190855 to 191455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,830 DEBUG Processing 473/716 atomic regions from SNP 141895 to 142495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,857 DEBUG Processing 570/759 atomic regions from SNP 170900 to 171500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,891 DEBUG Processing 7/677 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,049 DEBUG Processing 349/745 atomic regions from SNP 104641 to 105241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,144 DEBUG Processing 638/868 atomic regions from SNP 191155 to 191755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,149 DEBUG Processing 474/716 atomic regions from SNP 142195 to 142795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,169 DEBUG Processing 571/759 atomic regions from SNP 171200 to 171800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,212 DEBUG Processing 8/677 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,260 DEBUG Processing 350/745 atomic regions from SNP 104941 to 105541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,383 DEBUG Processing 475/716 atomic regions from SNP 142495 to 143095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,390 DEBUG Processing 639/868 atomic regions from SNP 191455 to 192055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,404 DEBUG Processing 572/759 atomic regions from SNP 171500 to 172100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,442 DEBUG Processing 9/677 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,472 DEBUG Processing 351/745 atomic regions from SNP 105241 to 105841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,609 DEBUG Processing 476/716 atomic regions from SNP 142795 to 143395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,633 DEBUG Processing 573/759 atomic regions from SNP 171800 to 172400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,636 DEBUG Processing 640/868 atomic regions from SNP 191755 to 192355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,689 DEBUG Processing 10/677 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,702 DEBUG Processing 352/745 atomic regions from SNP 105541 to 106141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,871 DEBUG Processing 477/716 atomic regions from SNP 143095 to 143695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,905 DEBUG Processing 574/759 atomic regions from SNP 172100 to 172700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,929 DEBUG Processing 353/745 atomic regions from SNP 105841 to 106441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,930 DEBUG Processing 11/677 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,947 DEBUG Processing 641/868 atomic regions from SNP 192055 to 192655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,098 DEBUG Processing 478/716 atomic regions from SNP 143395 to 143995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,146 DEBUG Processing 575/759 atomic regions from SNP 172400 to 173000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,166 DEBUG Processing 354/745 atomic regions from SNP 106141 to 106741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,176 DEBUG Processing 12/677 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,200 DEBUG Processing 642/868 atomic regions from SNP 192355 to 192955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,323 DEBUG Processing 479/716 atomic regions from SNP 143695 to 144295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,376 DEBUG Processing 576/759 atomic regions from SNP 172700 to 173300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,391 DEBUG Processing 355/745 atomic regions from SNP 106441 to 107041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,402 DEBUG Processing 13/677 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,448 DEBUG Processing 643/868 atomic regions from SNP 192655 to 193255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,542 DEBUG Processing 480/716 atomic regions from SNP 143995 to 144595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,599 DEBUG Processing 577/759 atomic regions from SNP 173000 to 173600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,616 DEBUG Processing 356/745 atomic regions from SNP 106741 to 107341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,629 DEBUG Processing 14/677 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,694 DEBUG Processing 644/868 atomic regions from SNP 192955 to 193555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,765 DEBUG Processing 481/716 atomic regions from SNP 144295 to 144895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,831 DEBUG Processing 578/759 atomic regions from SNP 173300 to 173900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,844 DEBUG Processing 357/745 atomic regions from SNP 107041 to 107641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,854 DEBUG Processing 15/677 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,935 DEBUG Processing 645/868 atomic regions from SNP 193255 to 193855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,981 DEBUG Processing 482/716 atomic regions from SNP 144595 to 145195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,052 DEBUG Processing 579/759 atomic regions from SNP 173600 to 174200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,062 DEBUG Processing 358/745 atomic regions from SNP 107341 to 107941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,074 DEBUG Processing 16/677 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,174 DEBUG Processing 646/868 atomic regions from SNP 193555 to 194155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,197 DEBUG Processing 483/716 atomic regions from SNP 144895 to 145495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,269 DEBUG Processing 580/759 atomic regions from SNP 173900 to 174500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,278 DEBUG Processing 359/745 atomic regions from SNP 107641 to 108241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,292 DEBUG Processing 17/677 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,409 DEBUG Processing 647/868 atomic regions from SNP 193855 to 194455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,410 DEBUG Processing 484/716 atomic regions from SNP 145195 to 145795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,485 DEBUG Processing 581/759 atomic regions from SNP 174200 to 174800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,494 DEBUG Processing 360/745 atomic regions from SNP 107941 to 108541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,505 DEBUG Processing 18/677 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,626 DEBUG Processing 485/716 atomic regions from SNP 145495 to 146095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,645 DEBUG Processing 648/868 atomic regions from SNP 194155 to 194755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,707 DEBUG Processing 582/759 atomic regions from SNP 174500 to 175100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,713 DEBUG Processing 361/745 atomic regions from SNP 108241 to 108841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,729 DEBUG Processing 19/677 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,853 DEBUG Processing 486/716 atomic regions from SNP 145795 to 146395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,899 DEBUG Processing 649/868 atomic regions from SNP 194455 to 195055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,939 DEBUG Processing 362/745 atomic regions from SNP 108541 to 109141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,944 DEBUG Processing 583/759 atomic regions from SNP 174800 to 175400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,961 DEBUG Processing 20/677 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,072 DEBUG Processing 487/716 atomic regions from SNP 146095 to 146695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,149 DEBUG Processing 650/868 atomic regions from SNP 194755 to 195355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,160 DEBUG Processing 363/745 atomic regions from SNP 108841 to 109441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,168 DEBUG Processing 584/759 atomic regions from SNP 175100 to 175700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,189 DEBUG Processing 21/677 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,297 DEBUG Processing 488/716 atomic regions from SNP 146395 to 146995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,390 DEBUG Processing 364/745 atomic regions from SNP 109141 to 109741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,404 DEBUG Processing 585/759 atomic regions from SNP 175400 to 176000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,432 DEBUG Processing 651/868 atomic regions from SNP 195055 to 195655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,433 DEBUG Processing 22/677 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,538 DEBUG Processing 489/716 atomic regions from SNP 146695 to 147295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,633 DEBUG Processing 365/745 atomic regions from SNP 109441 to 110041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,664 DEBUG Processing 586/759 atomic regions from SNP 175700 to 176300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,697 DEBUG Processing 23/677 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,748 DEBUG Processing 652/868 atomic regions from SNP 195355 to 195955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,770 DEBUG Processing 490/716 atomic regions from SNP 146995 to 147595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,857 DEBUG Processing 366/745 atomic regions from SNP 109741 to 110341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,892 DEBUG Processing 587/759 atomic regions from SNP 176000 to 176600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,922 DEBUG Processing 24/677 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,014 DEBUG Processing 491/716 atomic regions from SNP 147295 to 147895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,023 DEBUG Processing 653/868 atomic regions from SNP 195655 to 196255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,083 DEBUG Processing 367/745 atomic regions from SNP 110041 to 110641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,117 DEBUG Processing 588/759 atomic regions from SNP 176300 to 176900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,144 DEBUG Processing 25/677 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,251 DEBUG Processing 492/716 atomic regions from SNP 147595 to 148195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,292 DEBUG Processing 654/868 atomic regions from SNP 195955 to 196555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,313 DEBUG Processing 368/745 atomic regions from SNP 110341 to 110941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,346 DEBUG Processing 589/759 atomic regions from SNP 176600 to 177200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,366 DEBUG Processing 26/677 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,480 DEBUG Processing 493/716 atomic regions from SNP 147895 to 148495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,547 DEBUG Processing 369/745 atomic regions from SNP 110641 to 111241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,577 DEBUG Processing 590/759 atomic regions from SNP 176900 to 177500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,589 DEBUG Processing 655/868 atomic regions from SNP 196255 to 196855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,599 DEBUG Processing 27/677 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,724 DEBUG Processing 494/716 atomic regions from SNP 148195 to 148795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,780 DEBUG Processing 370/745 atomic regions from SNP 110941 to 111541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,812 DEBUG Processing 591/759 atomic regions from SNP 177200 to 177800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,840 DEBUG Processing 28/677 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,888 DEBUG Processing 656/868 atomic regions from SNP 196555 to 197155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,996 DEBUG Processing 495/716 atomic regions from SNP 148495 to 149095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,054 DEBUG Processing 371/745 atomic regions from SNP 111241 to 111841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,078 DEBUG Processing 592/759 atomic regions from SNP 177500 to 178100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,111 DEBUG Processing 29/677 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,184 DEBUG Processing 657/868 atomic regions from SNP 196855 to 197455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,258 DEBUG Processing 496/716 atomic regions from SNP 148795 to 149395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,321 DEBUG Processing 372/745 atomic regions from SNP 111541 to 112141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,324 DEBUG Processing 593/759 atomic regions from SNP 177800 to 178400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,394 DEBUG Processing 30/677 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,483 DEBUG Processing 658/868 atomic regions from SNP 197155 to 197755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,507 DEBUG Processing 497/716 atomic regions from SNP 149095 to 149695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,551 DEBUG Processing 373/745 atomic regions from SNP 111841 to 112441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,554 DEBUG Processing 594/759 atomic regions from SNP 178100 to 178700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,629 DEBUG Processing 31/677 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,684 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:52:29,744 DEBUG Processing 659/868 atomic regions from SNP 197455 to 198055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,756 DEBUG Processing 498/716 atomic regions from SNP 149395 to 149995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,781 DEBUG Processing 595/759 atomic regions from SNP 178400 to 179000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,783 DEBUG Processing 374/745 atomic regions from SNP 112141 to 112741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,857 DEBUG Processing 32/677 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,008 DEBUG Processing 499/716 atomic regions from SNP 149695 to 150295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,011 DEBUG Processing 660/868 atomic regions from SNP 197755 to 198355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,032 DEBUG Processing 596/759 atomic regions from SNP 178700 to 179300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,033 DEBUG Processing 375/745 atomic regions from SNP 112441 to 113041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,125 DEBUG Processing 33/677 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,424 DEBUG Processing 376/745 atomic regions from SNP 112741 to 113341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,434 DEBUG Processing 500/716 atomic regions from SNP 149995 to 150595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,435 DEBUG Processing 597/759 atomic regions from SNP 179000 to 179600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,477 DEBUG Processing 661/868 atomic regions from SNP 198055 to 198655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,565 DEBUG Processing 34/677 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,766 DEBUG Processing 377/745 atomic regions from SNP 113041 to 113641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,771 DEBUG Processing 598/759 atomic regions from SNP 179300 to 179900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,788 DEBUG Processing 501/716 atomic regions from SNP 150295 to 150895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,834 DEBUG Processing 662/868 atomic regions from SNP 198355 to 198955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,918 DEBUG Processing 35/677 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,087 DEBUG Processing 378/745 atomic regions from SNP 113341 to 113941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,131 DEBUG Processing 599/759 atomic regions from SNP 179600 to 180200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,164 DEBUG Processing 502/716 atomic regions from SNP 150595 to 151195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,281 DEBUG Processing 36/677 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,282 DEBUG Processing 663/868 atomic regions from SNP 198655 to 199255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,414 DEBUG Processing 379/745 atomic regions from SNP 113641 to 114241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,445 DEBUG Processing 600/759 atomic regions from SNP 179900 to 180500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,484 DEBUG Processing 503/716 atomic regions from SNP 150895 to 151495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,545 DEBUG Processing 37/677 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,579 DEBUG Processing 664/868 atomic regions from SNP 198955 to 199555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,664 DEBUG Processing 380/745 atomic regions from SNP 113941 to 114541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,688 DEBUG Processing 601/759 atomic regions from SNP 180200 to 180800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,749 DEBUG Processing 504/716 atomic regions from SNP 151195 to 151795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,796 DEBUG Processing 38/677 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,855 DEBUG Processing 665/868 atomic regions from SNP 199255 to 199855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,904 DEBUG Processing 381/745 atomic regions from SNP 114241 to 114841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,928 DEBUG Processing 602/759 atomic regions from SNP 180500 to 181100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,004 DEBUG Processing 505/716 atomic regions from SNP 151495 to 152095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,028 DEBUG Processing 39/677 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,108 DEBUG Processing 666/868 atomic regions from SNP 199555 to 200155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,126 DEBUG Processing 382/745 atomic regions from SNP 114541 to 115141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,156 DEBUG Processing 603/759 atomic regions from SNP 180800 to 181400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,239 DEBUG Processing 506/716 atomic regions from SNP 151795 to 152395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,255 DEBUG Processing 40/677 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,364 DEBUG Processing 383/745 atomic regions from SNP 114841 to 115441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,369 DEBUG Processing 667/868 atomic regions from SNP 199855 to 200455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,392 DEBUG Processing 604/759 atomic regions from SNP 181100 to 181700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,482 DEBUG Processing 41/677 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,485 DEBUG Processing 507/716 atomic regions from SNP 152095 to 152695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,615 DEBUG Processing 384/745 atomic regions from SNP 115141 to 115741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,619 DEBUG Processing 605/759 atomic regions from SNP 181400 to 182000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,676 DEBUG Processing 668/868 atomic regions from SNP 200155 to 200755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,721 DEBUG Processing 508/716 atomic regions from SNP 152395 to 152995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,722 DEBUG Processing 42/677 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,851 DEBUG Processing 606/759 atomic regions from SNP 181700 to 182300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,883 DEBUG Processing 385/745 atomic regions from SNP 115441 to 116041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,947 DEBUG Processing 509/716 atomic regions from SNP 152695 to 153295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,963 DEBUG Processing 43/677 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,975 DEBUG Processing 669/868 atomic regions from SNP 200455 to 201055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,089 DEBUG Processing 607/759 atomic regions from SNP 182000 to 182600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,161 DEBUG Processing 386/745 atomic regions from SNP 115741 to 116341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,191 DEBUG Processing 510/716 atomic regions from SNP 152995 to 153595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,212 DEBUG Processing 44/677 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,296 DEBUG Processing 670/868 atomic regions from SNP 200755 to 201355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,321 DEBUG Processing 608/759 atomic regions from SNP 182300 to 182900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,429 DEBUG Processing 511/716 atomic regions from SNP 153295 to 153895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,431 DEBUG Processing 387/745 atomic regions from SNP 116041 to 116641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,447 DEBUG Processing 45/677 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,535 DEBUG Processing 609/759 atomic regions from SNP 182600 to 183200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,567 DEBUG Processing 671/868 atomic regions from SNP 201055 to 201655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,652 DEBUG Processing 512/716 atomic regions from SNP 153595 to 154195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,668 DEBUG Processing 46/677 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,688 DEBUG Processing 388/745 atomic regions from SNP 116341 to 116941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,751 DEBUG Processing 610/759 atomic regions from SNP 182900 to 183500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,840 DEBUG Processing 672/868 atomic regions from SNP 201355 to 201955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,889 DEBUG Processing 513/716 atomic regions from SNP 153895 to 154495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,914 DEBUG Processing 47/677 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,962 DEBUG Processing 389/745 atomic regions from SNP 116641 to 117241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,985 DEBUG Processing 611/759 atomic regions from SNP 183200 to 183800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,106 DEBUG Processing 673/868 atomic regions from SNP 201655 to 202255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,117 DEBUG Processing 514/716 atomic regions from SNP 154195 to 154795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,160 DEBUG Processing 48/677 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,210 DEBUG Processing 612/759 atomic regions from SNP 183500 to 184100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,238 DEBUG Processing 390/745 atomic regions from SNP 116941 to 117541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,342 DEBUG Processing 515/716 atomic regions from SNP 154495 to 155095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,369 DEBUG Processing 674/868 atomic regions from SNP 201955 to 202555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,406 DEBUG Processing 49/677 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,438 DEBUG Processing 613/759 atomic regions from SNP 183800 to 184400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,507 DEBUG Processing 391/745 atomic regions from SNP 117241 to 117841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,597 DEBUG Processing 516/716 atomic regions from SNP 154795 to 155395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,663 DEBUG Processing 675/868 atomic regions from SNP 202255 to 202855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,663 DEBUG Processing 50/677 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,676 DEBUG Processing 614/759 atomic regions from SNP 184100 to 184700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,737 DEBUG Processing 392/745 atomic regions from SNP 117541 to 118141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,832 DEBUG Processing 517/716 atomic regions from SNP 155095 to 155695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,896 DEBUG Processing 615/759 atomic regions from SNP 184400 to 185000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,905 DEBUG Processing 51/677 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,927 DEBUG Processing 676/868 atomic regions from SNP 202555 to 203155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,987 DEBUG Processing 393/745 atomic regions from SNP 117841 to 118441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,067 DEBUG Processing 518/716 atomic regions from SNP 155395 to 155995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,126 DEBUG Processing 616/759 atomic regions from SNP 184700 to 185300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,146 DEBUG Processing 52/677 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,178 DEBUG Processing 677/868 atomic regions from SNP 202855 to 203455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,246 DEBUG Processing 394/745 atomic regions from SNP 118141 to 118741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,287 DEBUG Processing 519/716 atomic regions from SNP 155695 to 156295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,349 DEBUG Processing 617/759 atomic regions from SNP 185000 to 185600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,374 DEBUG Processing 53/677 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,430 DEBUG Processing 678/868 atomic regions from SNP 203155 to 203755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,487 DEBUG Processing 395/745 atomic regions from SNP 118441 to 119041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,509 DEBUG Processing 520/716 atomic regions from SNP 155995 to 156595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,588 DEBUG Processing 618/759 atomic regions from SNP 185300 to 185900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,635 DEBUG Processing 54/677 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,738 DEBUG Processing 679/868 atomic regions from SNP 203455 to 204055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,942 DEBUG Processing 396/745 atomic regions from SNP 118741 to 119341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,946 DEBUG Processing 521/716 atomic regions from SNP 156295 to 156895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,989 DEBUG Processing 619/759 atomic regions from SNP 185600 to 186200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,032 DEBUG Processing 55/677 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,058 DEBUG Processing 680/868 atomic regions from SNP 203755 to 204355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,191 DEBUG Processing 522/716 atomic regions from SNP 156595 to 157195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,197 DEBUG Processing 397/745 atomic regions from SNP 119041 to 119641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,231 DEBUG Processing 620/759 atomic regions from SNP 185900 to 186500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,270 DEBUG Processing 56/677 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,312 DEBUG Processing 681/868 atomic regions from SNP 204055 to 204655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,424 DEBUG Processing 523/716 atomic regions from SNP 156895 to 157495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,446 DEBUG Processing 398/745 atomic regions from SNP 119341 to 119941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,460 DEBUG Processing 621/759 atomic regions from SNP 186200 to 186800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,514 DEBUG Processing 57/677 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,601 DEBUG Processing 682/868 atomic regions from SNP 204355 to 204955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,654 DEBUG Processing 524/716 atomic regions from SNP 157195 to 157795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,692 DEBUG Processing 399/745 atomic regions from SNP 119641 to 120241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,692 DEBUG Processing 622/759 atomic regions from SNP 186500 to 187100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,754 DEBUG Processing 58/677 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,929 DEBUG Processing 683/868 atomic regions from SNP 204655 to 205255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,958 DEBUG Processing 525/716 atomic regions from SNP 157495 to 158095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,016 DEBUG Processing 623/759 atomic regions from SNP 186800 to 187400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,074 DEBUG Processing 400/745 atomic regions from SNP 119941 to 120541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,082 DEBUG Processing 59/677 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,223 DEBUG Processing 684/868 atomic regions from SNP 204955 to 205555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,224 DEBUG Processing 526/716 atomic regions from SNP 157795 to 158395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,252 DEBUG Processing 624/759 atomic regions from SNP 187100 to 187700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,320 DEBUG Processing 60/677 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,325 DEBUG Processing 401/745 atomic regions from SNP 120241 to 120841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,460 DEBUG Processing 527/716 atomic regions from SNP 158095 to 158695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,478 DEBUG Processing 685/868 atomic regions from SNP 205255 to 205855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,480 DEBUG Processing 625/759 atomic regions from SNP 187400 to 188000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,550 DEBUG Processing 402/745 atomic regions from SNP 120541 to 121141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,553 DEBUG Processing 61/677 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,687 DEBUG Processing 528/716 atomic regions from SNP 158395 to 158995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,704 DEBUG Processing 626/759 atomic regions from SNP 187700 to 188300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,730 DEBUG Processing 686/868 atomic regions from SNP 205555 to 206155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,776 DEBUG Processing 403/745 atomic regions from SNP 120841 to 121441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,780 DEBUG Processing 62/677 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,910 DEBUG Processing 529/716 atomic regions from SNP 158695 to 159295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,924 DEBUG Processing 627/759 atomic regions from SNP 188000 to 188600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,983 DEBUG Processing 687/868 atomic regions from SNP 205855 to 206455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,992 DEBUG Processing 404/745 atomic regions from SNP 121141 to 121741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,002 DEBUG Processing 63/677 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,131 DEBUG Processing 530/716 atomic regions from SNP 158995 to 159595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,143 DEBUG Processing 628/759 atomic regions from SNP 188300 to 188900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,211 DEBUG Processing 405/745 atomic regions from SNP 121441 to 122041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,229 DEBUG Processing 64/677 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,249 DEBUG Processing 688/868 atomic regions from SNP 206155 to 206755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,359 DEBUG Processing 531/716 atomic regions from SNP 159295 to 159895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,363 DEBUG Processing 629/759 atomic regions from SNP 188600 to 189200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,429 DEBUG Processing 406/745 atomic regions from SNP 121741 to 122341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,473 DEBUG Processing 65/677 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,511 DEBUG Processing 689/868 atomic regions from SNP 206455 to 207055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,577 DEBUG Processing 630/759 atomic regions from SNP 188900 to 189500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,578 DEBUG Processing 532/716 atomic regions from SNP 159595 to 160195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,642 DEBUG Processing 407/745 atomic regions from SNP 122041 to 122641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,700 DEBUG Processing 66/677 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,777 DEBUG Processing 690/868 atomic regions from SNP 206755 to 207355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,791 DEBUG Processing 631/759 atomic regions from SNP 189200 to 189800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,797 DEBUG Processing 533/716 atomic regions from SNP 159895 to 160495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,857 DEBUG Processing 408/745 atomic regions from SNP 122341 to 122941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,927 DEBUG Processing 67/677 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,012 DEBUG Processing 632/759 atomic regions from SNP 189500 to 190100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,026 DEBUG Processing 534/716 atomic regions from SNP 160195 to 160795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,054 DEBUG Processing 691/868 atomic regions from SNP 207055 to 207655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,077 DEBUG Processing 409/745 atomic regions from SNP 122641 to 123241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,146 DEBUG Processing 68/677 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,228 DEBUG Processing 633/759 atomic regions from SNP 189800 to 190400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,262 DEBUG Processing 535/716 atomic regions from SNP 160495 to 161095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,294 DEBUG Processing 410/745 atomic regions from SNP 122941 to 123541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,328 DEBUG Processing 692/868 atomic regions from SNP 207355 to 207955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,366 DEBUG Processing 69/677 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,442 DEBUG Processing 634/759 atomic regions from SNP 190100 to 190700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,505 DEBUG Processing 536/716 atomic regions from SNP 160795 to 161395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,507 DEBUG Processing 411/745 atomic regions from SNP 123241 to 123841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,577 DEBUG Processing 693/868 atomic regions from SNP 207655 to 208255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,590 DEBUG Processing 70/677 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,652 DEBUG Processing 635/759 atomic regions from SNP 190400 to 191000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,716 DEBUG Processing 412/745 atomic regions from SNP 123541 to 124141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,730 DEBUG Processing 537/716 atomic regions from SNP 161095 to 161695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,819 DEBUG Processing 71/677 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,832 DEBUG Processing 694/868 atomic regions from SNP 207955 to 208555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,863 DEBUG Processing 636/759 atomic regions from SNP 190700 to 191300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,933 DEBUG Processing 413/745 atomic regions from SNP 123841 to 124441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,950 DEBUG Processing 538/716 atomic regions from SNP 161395 to 161995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,059 DEBUG Processing 72/677 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,075 DEBUG Processing 637/759 atomic regions from SNP 191000 to 191600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,087 DEBUG Processing 695/868 atomic regions from SNP 208255 to 208855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,171 DEBUG Processing 539/716 atomic regions from SNP 161695 to 162295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,175 DEBUG Processing 414/745 atomic regions from SNP 124141 to 124741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,288 DEBUG Processing 638/759 atomic regions from SNP 191300 to 191900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,311 DEBUG Processing 73/677 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,362 DEBUG Processing 696/868 atomic regions from SNP 208555 to 209155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,390 DEBUG Processing 540/716 atomic regions from SNP 161995 to 162595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,393 DEBUG Processing 415/745 atomic regions from SNP 124441 to 125041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,501 DEBUG Processing 639/759 atomic regions from SNP 191600 to 192200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,564 DEBUG Processing 74/677 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,606 DEBUG Processing 416/745 atomic regions from SNP 124741 to 125341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,609 DEBUG Processing 541/716 atomic regions from SNP 162295 to 162895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,637 DEBUG Processing 697/868 atomic regions from SNP 208855 to 209455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,713 DEBUG Processing 640/759 atomic regions from SNP 191900 to 192500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,825 DEBUG Processing 417/745 atomic regions from SNP 125041 to 125641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,829 DEBUG Processing 75/677 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,832 DEBUG Processing 542/716 atomic regions from SNP 162595 to 163195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,920 DEBUG Processing 698/868 atomic regions from SNP 209155 to 209755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,931 DEBUG Processing 641/759 atomic regions from SNP 192200 to 192800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,044 DEBUG Processing 418/745 atomic regions from SNP 125341 to 125941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,055 DEBUG Processing 543/716 atomic regions from SNP 162895 to 163495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,090 DEBUG Processing 76/677 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,144 DEBUG Processing 642/759 atomic regions from SNP 192500 to 193100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,205 DEBUG Processing 699/868 atomic regions from SNP 209455 to 210055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,259 DEBUG Processing 419/745 atomic regions from SNP 125641 to 126241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,270 DEBUG Processing 544/716 atomic regions from SNP 163195 to 163795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,331 DEBUG Processing 77/677 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,356 DEBUG Processing 643/759 atomic regions from SNP 192800 to 193400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,471 DEBUG Processing 420/745 atomic regions from SNP 125941 to 126541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,475 DEBUG Processing 700/868 atomic regions from SNP 209755 to 210355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,486 DEBUG Processing 545/716 atomic regions from SNP 163495 to 164095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,571 DEBUG Processing 644/759 atomic regions from SNP 193100 to 193700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,576 DEBUG Processing 78/677 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,688 DEBUG Processing 421/745 atomic regions from SNP 126241 to 126841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,704 DEBUG Processing 546/716 atomic regions from SNP 163795 to 164395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,758 DEBUG Processing 701/868 atomic regions from SNP 210055 to 210655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,785 DEBUG Processing 645/759 atomic regions from SNP 193400 to 194000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,835 DEBUG Processing 79/677 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,900 DEBUG Processing 422/745 atomic regions from SNP 126541 to 127141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,920 DEBUG Processing 547/716 atomic regions from SNP 164095 to 164695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,002 DEBUG Processing 646/759 atomic regions from SNP 193700 to 194300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,043 DEBUG Processing 702/868 atomic regions from SNP 210355 to 210955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,099 DEBUG Processing 80/677 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,118 DEBUG Processing 423/745 atomic regions from SNP 126841 to 127441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,152 DEBUG Processing 548/716 atomic regions from SNP 164395 to 164995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,212 DEBUG Processing 647/759 atomic regions from SNP 194000 to 194600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,320 DEBUG Processing 703/868 atomic regions from SNP 210655 to 211255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,329 DEBUG Processing 424/745 atomic regions from SNP 127141 to 127741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,363 DEBUG Processing 81/677 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,373 DEBUG Processing 549/716 atomic regions from SNP 164695 to 165295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,426 DEBUG Processing 648/759 atomic regions from SNP 194300 to 194900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,543 DEBUG Processing 425/745 atomic regions from SNP 127441 to 128041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,596 DEBUG Processing 704/868 atomic regions from SNP 210955 to 211555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,602 DEBUG Processing 550/716 atomic regions from SNP 164995 to 165595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,602 DEBUG Processing 82/677 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,640 DEBUG Processing 649/759 atomic regions from SNP 194600 to 195200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,754 DEBUG Processing 426/745 atomic regions from SNP 127741 to 128341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,832 DEBUG Processing 551/716 atomic regions from SNP 165295 to 165895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,855 DEBUG Processing 650/759 atomic regions from SNP 194900 to 195500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,857 DEBUG Processing 705/868 atomic regions from SNP 211255 to 211855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,860 DEBUG Processing 83/677 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,963 DEBUG Processing 427/745 atomic regions from SNP 128041 to 128641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,062 DEBUG Processing 552/716 atomic regions from SNP 165595 to 166195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,066 DEBUG Processing 651/759 atomic regions from SNP 195200 to 195800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,103 DEBUG Processing 706/868 atomic regions from SNP 211555 to 212155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,117 DEBUG Processing 84/677 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,176 DEBUG Processing 428/745 atomic regions from SNP 128341 to 128941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,276 DEBUG Processing 652/759 atomic regions from SNP 195500 to 196100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,284 DEBUG Processing 553/716 atomic regions from SNP 165895 to 166495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,352 DEBUG Processing 707/868 atomic regions from SNP 211855 to 212455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,374 DEBUG Processing 85/677 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,386 DEBUG Processing 429/745 atomic regions from SNP 128641 to 129241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,486 DEBUG Processing 653/759 atomic regions from SNP 195800 to 196400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,501 DEBUG Processing 554/716 atomic regions from SNP 166195 to 166795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,596 DEBUG Processing 430/745 atomic regions from SNP 128941 to 129541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,598 DEBUG Processing 708/868 atomic regions from SNP 212155 to 212755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,631 DEBUG Processing 86/677 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,694 DEBUG Processing 654/759 atomic regions from SNP 196100 to 196700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,722 DEBUG Processing 555/716 atomic regions from SNP 166495 to 167095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,810 DEBUG Processing 431/745 atomic regions from SNP 129241 to 129841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,858 DEBUG Processing 709/868 atomic regions from SNP 212455 to 213055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,876 DEBUG Processing 87/677 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,903 DEBUG Processing 655/759 atomic regions from SNP 196400 to 197000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,939 DEBUG Processing 556/716 atomic regions from SNP 166795 to 167395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,022 DEBUG Processing 432/745 atomic regions from SNP 129541 to 130141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,110 DEBUG Processing 710/868 atomic regions from SNP 212755 to 213355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,114 DEBUG Processing 88/677 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,118 DEBUG Processing 656/759 atomic regions from SNP 196700 to 197300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,158 DEBUG Processing 557/716 atomic regions from SNP 167095 to 167695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,230 DEBUG Processing 433/745 atomic regions from SNP 129841 to 130441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,335 DEBUG Processing 657/759 atomic regions from SNP 197000 to 197600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,350 DEBUG Processing 89/677 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,375 DEBUG Processing 711/868 atomic regions from SNP 213055 to 213655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,380 DEBUG Processing 558/716 atomic regions from SNP 167395 to 167995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,442 DEBUG Processing 434/745 atomic regions from SNP 130141 to 130741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,553 DEBUG Processing 658/759 atomic regions from SNP 197300 to 197900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,581 DEBUG Processing 90/677 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,603 DEBUG Processing 559/716 atomic regions from SNP 167695 to 168295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,657 DEBUG Processing 712/868 atomic regions from SNP 213355 to 213955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,658 DEBUG Processing 435/745 atomic regions from SNP 130441 to 131041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,763 DEBUG Processing 659/759 atomic regions from SNP 197600 to 198200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,803 DEBUG Processing 91/677 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,822 DEBUG Processing 560/716 atomic regions from SNP 167995 to 168595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,871 DEBUG Processing 436/745 atomic regions from SNP 130741 to 131341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,916 DEBUG Processing 713/868 atomic regions from SNP 213655 to 214255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,974 DEBUG Processing 660/759 atomic regions from SNP 197900 to 198500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,021 DEBUG Processing 92/677 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,039 DEBUG Processing 561/716 atomic regions from SNP 168295 to 168895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,080 DEBUG Processing 437/745 atomic regions from SNP 131041 to 131641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,161 DEBUG Processing 714/868 atomic regions from SNP 213955 to 214555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,185 DEBUG Processing 661/759 atomic regions from SNP 198200 to 198800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,244 DEBUG Processing 93/677 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,257 DEBUG Processing 562/716 atomic regions from SNP 168595 to 169195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,290 DEBUG Processing 438/745 atomic regions from SNP 131341 to 131941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,399 DEBUG Processing 662/759 atomic regions from SNP 198500 to 199100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,408 DEBUG Processing 715/868 atomic regions from SNP 214255 to 214855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,444 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:52:45,446 DEBUG chr9: Signal quantile: 0.995. signal threshold: 23. Best RMSEA: 0.040 2025-01-31 09:52:45,464 DEBUG Processing 94/677 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,473 DEBUG Processing 563/716 atomic regions from SNP 168895 to 169495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,505 DEBUG Processing 439/745 atomic regions from SNP 131641 to 132241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,614 DEBUG Processing 663/759 atomic regions from SNP 198800 to 199400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,656 DEBUG Processing 716/868 atomic regions from SNP 214555 to 215155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,695 DEBUG Processing 95/677 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,708 DEBUG Processing 564/716 atomic regions from SNP 169195 to 169795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,722 DEBUG Processing 440/745 atomic regions from SNP 131941 to 132541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,822 DEBUG Processing 664/759 atomic regions from SNP 199100 to 199700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,902 DEBUG Processing 717/868 atomic regions from SNP 214855 to 215455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,921 DEBUG Processing 96/677 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,947 DEBUG Processing 441/745 atomic regions from SNP 132241 to 132841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,952 DEBUG Processing 565/716 atomic regions from SNP 169495 to 170095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,032 DEBUG Processing 665/759 atomic regions from SNP 199400 to 200000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,146 DEBUG Processing 97/677 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,151 DEBUG Processing 718/868 atomic regions from SNP 215155 to 215755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,167 DEBUG Processing 442/745 atomic regions from SNP 132541 to 133141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,182 DEBUG Processing 566/716 atomic regions from SNP 169795 to 170395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,242 DEBUG Processing 666/759 atomic regions from SNP 199700 to 200300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,366 DEBUG Processing 98/677 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,379 DEBUG Processing 443/745 atomic regions from SNP 132841 to 133441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,407 DEBUG Processing 719/868 atomic regions from SNP 215455 to 216055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,409 DEBUG Processing 567/716 atomic regions from SNP 170095 to 170695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,453 DEBUG Processing 667/759 atomic regions from SNP 200000 to 200600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,587 DEBUG Processing 99/677 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,588 DEBUG Processing 444/745 atomic regions from SNP 133141 to 133741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,628 DEBUG Processing 568/716 atomic regions from SNP 170395 to 170995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,675 DEBUG Processing 720/868 atomic regions from SNP 215755 to 216355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,685 DEBUG Processing 668/759 atomic regions from SNP 200300 to 200900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,798 DEBUG Processing 445/745 atomic regions from SNP 133441 to 134041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,810 DEBUG Processing 100/677 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,846 DEBUG Processing 569/716 atomic regions from SNP 170695 to 171295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,918 DEBUG Processing 669/759 atomic regions from SNP 200600 to 201200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,946 DEBUG Processing 721/868 atomic regions from SNP 216055 to 216655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,006 DEBUG Processing 446/745 atomic regions from SNP 133741 to 134341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,037 DEBUG Processing 101/677 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,061 DEBUG Processing 570/716 atomic regions from SNP 170995 to 171595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,130 DEBUG Processing 670/759 atomic regions from SNP 200900 to 201500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,229 DEBUG Processing 447/745 atomic regions from SNP 134041 to 134641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,229 DEBUG Processing 722/868 atomic regions from SNP 216355 to 216955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,268 DEBUG Processing 102/677 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,281 DEBUG Processing 571/716 atomic regions from SNP 171295 to 171895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,340 DEBUG Processing 671/759 atomic regions from SNP 201200 to 201800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,445 DEBUG Processing 448/745 atomic regions from SNP 134341 to 134941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,495 DEBUG Processing 103/677 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,506 DEBUG Processing 723/868 atomic regions from SNP 216655 to 217255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,517 DEBUG Processing 572/716 atomic regions from SNP 171595 to 172195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,551 DEBUG Processing 672/759 atomic regions from SNP 201500 to 202100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,669 DEBUG Processing 449/745 atomic regions from SNP 134641 to 135241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,722 DEBUG Processing 104/677 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,746 DEBUG chr9 total SNP count: 220651 2025-01-31 09:52:47,746 DEBUG chr9 length: 124595110 2025-01-31 09:52:47,746 DEBUG ----------------------------------------- 2025-01-31 09:52:47,746 INFO Processing SNPs in chr9 2025-01-31 09:52:47,760 DEBUG Processing 573/716 atomic regions from SNP 171895 to 172495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,763 DEBUG Processing 673/759 atomic regions from SNP 201800 to 202400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,792 DEBUG Processing 724/868 atomic regions from SNP 216955 to 217555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,885 DEBUG Processing 450/745 atomic regions from SNP 134941 to 135541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,947 DEBUG Processing 105/677 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,970 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 220651)] 2025-01-31 09:52:47,984 DEBUG Processing 674/759 atomic regions from SNP 202100 to 202700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,991 DEBUG Processing 574/716 atomic regions from SNP 172195 to 172795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,066 DEBUG Processing 725/868 atomic regions from SNP 217255 to 217855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,095 DEBUG Processing 451/745 atomic regions from SNP 135241 to 135841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,121 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:48,171 DEBUG Processing 106/677 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,194 DEBUG Processing 675/759 atomic regions from SNP 202400 to 203000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,207 DEBUG Processing 575/716 atomic regions from SNP 172495 to 173095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,300 DEBUG Processing 452/745 atomic regions from SNP 135541 to 136141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,329 DEBUG Processing 726/868 atomic regions from SNP 217555 to 218155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,401 DEBUG Processing 107/677 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,406 DEBUG Processing 676/759 atomic regions from SNP 202700 to 203300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,422 DEBUG Processing 576/716 atomic regions from SNP 172795 to 173395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,507 DEBUG Processing 453/745 atomic regions from SNP 135841 to 136441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,590 DEBUG Processing 727/868 atomic regions from SNP 217855 to 218455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,622 DEBUG Processing 677/759 atomic regions from SNP 203000 to 203600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,637 DEBUG Processing 577/716 atomic regions from SNP 173095 to 173695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,646 DEBUG Processing 108/677 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,711 DEBUG Processing 454/745 atomic regions from SNP 136141 to 136741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,837 DEBUG Processing 728/868 atomic regions from SNP 218155 to 218755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,845 DEBUG Processing 678/759 atomic regions from SNP 203300 to 203900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,858 DEBUG Processing 578/716 atomic regions from SNP 173395 to 173995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,900 DEBUG Processing 109/677 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,924 DEBUG Processing 455/745 atomic regions from SNP 136441 to 137041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,086 DEBUG Processing 679/759 atomic regions from SNP 203600 to 204200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,086 DEBUG Processing 579/716 atomic regions from SNP 173695 to 174295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,087 DEBUG Processing 729/868 atomic regions from SNP 218455 to 219055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,136 DEBUG Processing 456/745 atomic regions from SNP 136741 to 137341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,147 DEBUG Processing 110/677 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,328 DEBUG Processing 680/759 atomic regions from SNP 203900 to 204500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,329 DEBUG Processing 580/716 atomic regions from SNP 173995 to 174595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,337 DEBUG Processing 730/868 atomic regions from SNP 218755 to 219355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,351 DEBUG Processing 457/745 atomic regions from SNP 137041 to 137641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,393 DEBUG Processing 111/677 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,550 DEBUG Processing 681/759 atomic regions from SNP 204200 to 204800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,566 DEBUG Processing 458/745 atomic regions from SNP 137341 to 137941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,574 DEBUG Processing 581/716 atomic regions from SNP 174295 to 174895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,582 DEBUG Processing 731/868 atomic regions from SNP 219055 to 219655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,631 DEBUG Processing 112/677 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,767 DEBUG Processing 682/759 atomic regions from SNP 204500 to 205100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,780 DEBUG Processing 459/745 atomic regions from SNP 137641 to 138241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,791 DEBUG Processing 582/716 atomic regions from SNP 174595 to 175195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,823 DEBUG Processing 732/868 atomic regions from SNP 219355 to 219955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,880 DEBUG Processing 113/677 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,990 DEBUG Processing 460/745 atomic regions from SNP 137941 to 138541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,002 DEBUG Processing 683/759 atomic regions from SNP 204800 to 205400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,007 DEBUG Processing 583/716 atomic regions from SNP 174895 to 175495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,062 DEBUG Processing 733/868 atomic regions from SNP 219655 to 220255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,105 DEBUG Processing 114/677 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,204 DEBUG Processing 461/745 atomic regions from SNP 138241 to 138841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,225 DEBUG Processing 584/716 atomic regions from SNP 175195 to 175795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,237 DEBUG Processing 684/759 atomic regions from SNP 205100 to 205700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,310 DEBUG Processing 734/868 atomic regions from SNP 219955 to 220555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,348 DEBUG Processing 115/677 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,420 DEBUG Processing 462/745 atomic regions from SNP 138541 to 139141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,445 DEBUG Processing 585/716 atomic regions from SNP 175495 to 176095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,461 DEBUG Processing 685/759 atomic regions from SNP 205400 to 206000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,568 DEBUG Processing 735/868 atomic regions from SNP 220255 to 220855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,589 DEBUG Processing 116/677 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,639 DEBUG Processing 463/745 atomic regions from SNP 138841 to 139441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,666 DEBUG Processing 586/716 atomic regions from SNP 175795 to 176395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,678 DEBUG Processing 686/759 atomic regions from SNP 205700 to 206300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,824 DEBUG Processing 736/868 atomic regions from SNP 220555 to 221155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,829 DEBUG Processing 117/677 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,856 DEBUG Processing 464/745 atomic regions from SNP 139141 to 139741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,883 DEBUG Processing 587/716 atomic regions from SNP 176095 to 176695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,894 DEBUG Processing 687/759 atomic regions from SNP 206000 to 206600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,058 DEBUG Processing 118/677 atomic regions from SNP 35217 to 35818 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,089 DEBUG Processing 737/868 atomic regions from SNP 220855 to 221455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,101 DEBUG Processing 465/745 atomic regions from SNP 139441 to 140041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,112 DEBUG Processing 588/716 atomic regions from SNP 176395 to 176995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,112 DEBUG Processing 688/759 atomic regions from SNP 206300 to 206900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,285 DEBUG Processing 119/677 atomic regions from SNP 35518 to 36119 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,331 DEBUG Processing 689/759 atomic regions from SNP 206600 to 207200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,334 DEBUG Processing 589/716 atomic regions from SNP 176695 to 177295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,345 DEBUG Processing 466/745 atomic regions from SNP 139741 to 140341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,360 DEBUG Processing 738/868 atomic regions from SNP 221155 to 221755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,525 DEBUG Processing 120/677 atomic regions from SNP 35819 to 36420 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,549 DEBUG Processing 690/759 atomic regions from SNP 206900 to 207500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,555 DEBUG Processing 590/716 atomic regions from SNP 176995 to 177595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,588 DEBUG Processing 467/745 atomic regions from SNP 140041 to 140641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,641 DEBUG Processing 739/868 atomic regions from SNP 221455 to 222055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,752 DEBUG Processing 121/677 atomic regions from SNP 36120 to 36721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,771 DEBUG Processing 691/759 atomic regions from SNP 207200 to 207800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,775 DEBUG Processing 591/716 atomic regions from SNP 177295 to 177895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,841 DEBUG Processing 468/745 atomic regions from SNP 140341 to 140941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,913 DEBUG Processing 740/868 atomic regions from SNP 221755 to 222355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,970 DEBUG Processing 122/677 atomic regions from SNP 36421 to 37022 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,998 DEBUG Processing 592/716 atomic regions from SNP 177595 to 178195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,002 DEBUG Processing 692/759 atomic regions from SNP 207500 to 208100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,082 DEBUG Processing 469/745 atomic regions from SNP 140641 to 141241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,167 DEBUG Processing 741/868 atomic regions from SNP 222055 to 222655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,189 DEBUG Processing 123/677 atomic regions from SNP 36722 to 37323 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,220 DEBUG Processing 693/759 atomic regions from SNP 207800 to 208400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,236 DEBUG Processing 593/716 atomic regions from SNP 177895 to 178495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,307 DEBUG Processing 470/745 atomic regions from SNP 140941 to 141541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,419 DEBUG Processing 124/677 atomic regions from SNP 37023 to 37624 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,434 DEBUG Processing 742/868 atomic regions from SNP 222355 to 222955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,440 DEBUG Processing 694/759 atomic regions from SNP 208100 to 208700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,485 DEBUG Processing 594/716 atomic regions from SNP 178195 to 178795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,536 DEBUG Processing 471/745 atomic regions from SNP 141241 to 141841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,638 DEBUG Processing 125/677 atomic regions from SNP 37324 to 37925 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,654 DEBUG Processing 695/759 atomic regions from SNP 208400 to 209000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,689 DEBUG Processing 743/868 atomic regions from SNP 222655 to 223255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,727 DEBUG Processing 595/716 atomic regions from SNP 178495 to 179095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,783 DEBUG Processing 472/745 atomic regions from SNP 141541 to 142141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,857 DEBUG Processing 126/677 atomic regions from SNP 37625 to 38226 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,871 DEBUG Processing 696/759 atomic regions from SNP 208700 to 209300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,957 DEBUG Processing 744/868 atomic regions from SNP 222955 to 223555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,968 DEBUG Processing 596/716 atomic regions from SNP 178795 to 179395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,027 DEBUG Processing 473/745 atomic regions from SNP 141841 to 142441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,073 DEBUG Processing 127/677 atomic regions from SNP 37926 to 38527 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,091 DEBUG Processing 697/759 atomic regions from SNP 209000 to 209600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,206 DEBUG Processing 597/716 atomic regions from SNP 179095 to 179695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,223 DEBUG Processing 745/868 atomic regions from SNP 223255 to 223855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:53,277 DEBUG Processing 474/745 atomic regions from SNP 142141 to 142741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,286 DEBUG Processing 128/677 atomic regions from SNP 38227 to 38828 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,320 DEBUG Processing 698/759 atomic regions from SNP 209300 to 209900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,440 DEBUG Processing 598/716 atomic regions from SNP 179395 to 179995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,461 DEBUG Processing 746/868 atomic regions from SNP 223555 to 224155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:53,499 DEBUG Processing 129/677 atomic regions from SNP 38528 to 39129 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,515 DEBUG Processing 475/745 atomic regions from SNP 142441 to 143041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,542 DEBUG Processing 699/759 atomic regions from SNP 209600 to 210200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,689 DEBUG Processing 599/716 atomic regions from SNP 179695 to 180295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,716 DEBUG Processing 130/677 atomic regions from SNP 38829 to 39430 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,722 DEBUG Processing 747/868 atomic regions from SNP 223855 to 224455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:53,729 DEBUG Processing 476/745 atomic regions from SNP 142741 to 143341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,758 DEBUG Processing 700/759 atomic regions from SNP 209900 to 210500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,937 DEBUG Processing 131/677 atomic regions from SNP 39130 to 39731 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,944 DEBUG Processing 600/716 atomic regions from SNP 179995 to 180595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,956 DEBUG Processing 477/745 atomic regions from SNP 143041 to 143641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,967 DEBUG Processing 748/868 atomic regions from SNP 224155 to 224755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:53,973 DEBUG Processing 701/759 atomic regions from SNP 210200 to 210800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,168 DEBUG Processing 132/677 atomic regions from SNP 39431 to 40032 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,172 DEBUG Processing 478/745 atomic regions from SNP 143341 to 143941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,193 DEBUG Processing 601/716 atomic regions from SNP 180295 to 180895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,193 DEBUG Processing 702/759 atomic regions from SNP 210500 to 211100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,208 DEBUG Processing 749/868 atomic regions from SNP 224455 to 225055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:54,387 DEBUG Processing 479/745 atomic regions from SNP 143641 to 144241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,412 DEBUG Processing 133/677 atomic regions from SNP 39732 to 40333 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,413 DEBUG Processing 703/759 atomic regions from SNP 210800 to 211400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,453 DEBUG Processing 602/716 atomic regions from SNP 180595 to 181195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,455 DEBUG Processing 750/868 atomic regions from SNP 224755 to 225355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:54,598 DEBUG Processing 480/745 atomic regions from SNP 143941 to 144541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,629 DEBUG Processing 704/759 atomic regions from SNP 211100 to 211700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,658 DEBUG Processing 134/677 atomic regions from SNP 40033 to 40634 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,698 DEBUG Processing 751/868 atomic regions from SNP 225055 to 225655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:54,708 DEBUG Processing 603/716 atomic regions from SNP 180895 to 181495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,807 DEBUG Processing 481/745 atomic regions from SNP 144241 to 144841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,842 DEBUG Processing 705/759 atomic regions from SNP 211400 to 212000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,899 DEBUG Processing 135/677 atomic regions from SNP 40334 to 40935 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,944 DEBUG Processing 752/868 atomic regions from SNP 225355 to 225955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:54,964 DEBUG Processing 604/716 atomic regions from SNP 181195 to 181795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,016 DEBUG Processing 482/745 atomic regions from SNP 144541 to 145141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,054 DEBUG Processing 706/759 atomic regions from SNP 211700 to 212300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,134 DEBUG Processing 136/677 atomic regions from SNP 40635 to 41236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,185 DEBUG Processing 753/868 atomic regions from SNP 225655 to 226255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:55,220 DEBUG Processing 605/716 atomic regions from SNP 181495 to 182095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,240 DEBUG Processing 483/745 atomic regions from SNP 144841 to 145441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,277 DEBUG Processing 707/759 atomic regions from SNP 212000 to 212600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,376 DEBUG Processing 137/677 atomic regions from SNP 40936 to 41537 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,426 DEBUG Processing 754/868 atomic regions from SNP 225955 to 226555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:55,464 DEBUG Processing 484/745 atomic regions from SNP 145141 to 145741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,476 DEBUG Processing 606/716 atomic regions from SNP 181795 to 182395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,508 DEBUG Processing 708/759 atomic regions from SNP 212300 to 212900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,631 DEBUG Processing 138/677 atomic regions from SNP 41237 to 41838 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,670 DEBUG Processing 755/868 atomic regions from SNP 226255 to 226855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:55,696 DEBUG Processing 485/745 atomic regions from SNP 145441 to 146041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,727 DEBUG Processing 709/759 atomic regions from SNP 212600 to 213200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,733 DEBUG Processing 607/716 atomic regions from SNP 182095 to 182695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,868 DEBUG Processing 139/677 atomic regions from SNP 41538 to 42139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,911 DEBUG Processing 756/868 atomic regions from SNP 226555 to 227155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:55,916 DEBUG Processing 486/745 atomic regions from SNP 145741 to 146341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,950 DEBUG Processing 710/759 atomic regions from SNP 212900 to 213500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,998 DEBUG Processing 608/716 atomic regions from SNP 182395 to 182995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,104 DEBUG Processing 140/677 atomic regions from SNP 41839 to 42440 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,132 DEBUG Processing 487/745 atomic regions from SNP 146041 to 146641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,147 DEBUG Processing 757/868 atomic regions from SNP 226855 to 227455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,170 DEBUG Processing 711/759 atomic regions from SNP 213200 to 213800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,258 DEBUG Processing 609/716 atomic regions from SNP 182695 to 183295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,341 DEBUG Processing 141/677 atomic regions from SNP 42140 to 42741 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,344 DEBUG Processing 488/745 atomic regions from SNP 146341 to 146941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,383 DEBUG Processing 758/868 atomic regions from SNP 227155 to 227755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,388 DEBUG Processing 712/759 atomic regions from SNP 213500 to 214100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,490 DEBUG Processing 610/716 atomic regions from SNP 182995 to 183595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,556 DEBUG Processing 489/745 atomic regions from SNP 146641 to 147241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,585 DEBUG Processing 142/677 atomic regions from SNP 42441 to 43042 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,604 DEBUG Processing 713/759 atomic regions from SNP 213800 to 214400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,620 DEBUG Processing 759/868 atomic regions from SNP 227455 to 228055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,726 DEBUG Processing 611/716 atomic regions from SNP 183295 to 183895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,769 DEBUG Processing 490/745 atomic regions from SNP 146941 to 147541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,828 DEBUG Processing 143/677 atomic regions from SNP 42742 to 43343 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,839 DEBUG Processing 714/759 atomic regions from SNP 214100 to 214700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,858 DEBUG Processing 760/868 atomic regions from SNP 227755 to 228355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,972 DEBUG Processing 612/716 atomic regions from SNP 183595 to 184195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,983 DEBUG Processing 491/745 atomic regions from SNP 147241 to 147841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,070 DEBUG Processing 144/677 atomic regions from SNP 43043 to 43644 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,072 DEBUG Processing 715/759 atomic regions from SNP 214400 to 215000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,094 DEBUG Processing 761/868 atomic regions from SNP 228055 to 228655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:57,198 DEBUG Processing 492/745 atomic regions from SNP 147541 to 148141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,219 DEBUG Processing 613/716 atomic regions from SNP 183895 to 184495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,303 DEBUG Processing 145/677 atomic regions from SNP 43344 to 43945 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,305 DEBUG Processing 716/759 atomic regions from SNP 214700 to 215300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,338 DEBUG Processing 762/868 atomic regions from SNP 228355 to 228955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:57,423 DEBUG Processing 493/745 atomic regions from SNP 147841 to 148441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,470 DEBUG Processing 614/716 atomic regions from SNP 184195 to 184795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,539 DEBUG Processing 717/759 atomic regions from SNP 215000 to 215600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,547 DEBUG Processing 146/677 atomic regions from SNP 43645 to 44246 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,580 DEBUG Processing 763/868 atomic regions from SNP 228655 to 229255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:57,658 DEBUG Processing 494/745 atomic regions from SNP 148141 to 148741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,712 DEBUG Processing 615/716 atomic regions from SNP 184495 to 185095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,756 DEBUG Processing 718/759 atomic regions from SNP 215300 to 215900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,803 DEBUG Processing 147/677 atomic regions from SNP 43946 to 44547 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,823 DEBUG Processing 764/868 atomic regions from SNP 228955 to 229555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:57,890 DEBUG Processing 495/745 atomic regions from SNP 148441 to 149041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,948 DEBUG Processing 616/716 atomic regions from SNP 184795 to 185395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,981 DEBUG Processing 719/759 atomic regions from SNP 215600 to 216200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,056 DEBUG Processing 148/677 atomic regions from SNP 44247 to 44848 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,084 DEBUG Processing 765/868 atomic regions from SNP 229255 to 229855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:58,117 DEBUG Processing 496/745 atomic regions from SNP 148741 to 149341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,176 DEBUG Processing 617/716 atomic regions from SNP 185095 to 185695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,199 DEBUG Processing 720/759 atomic regions from SNP 215900 to 216500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,279 DEBUG Processing 149/677 atomic regions from SNP 44548 to 45149 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,323 DEBUG Processing 766/868 atomic regions from SNP 229555 to 230155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:58,330 DEBUG Processing 497/745 atomic regions from SNP 149041 to 149641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,404 DEBUG Processing 618/716 atomic regions from SNP 185395 to 185995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,421 DEBUG Processing 721/759 atomic regions from SNP 216200 to 216800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,506 DEBUG Processing 150/677 atomic regions from SNP 44849 to 45450 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,540 DEBUG Processing 498/745 atomic regions from SNP 149341 to 149941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,562 DEBUG Processing 767/868 atomic regions from SNP 229855 to 230455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:58,638 DEBUG Processing 619/716 atomic regions from SNP 185695 to 186295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,644 DEBUG Processing 722/759 atomic regions from SNP 216500 to 217100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,724 DEBUG Processing 151/677 atomic regions from SNP 45150 to 45751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,744 DEBUG Processing 499/745 atomic regions from SNP 149641 to 150241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,804 DEBUG Processing 768/868 atomic regions from SNP 230155 to 230755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:58,869 DEBUG Processing 620/716 atomic regions from SNP 185995 to 186595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,869 DEBUG Processing 723/759 atomic regions from SNP 216800 to 217400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,936 DEBUG Processing 152/677 atomic regions from SNP 45451 to 46052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,953 DEBUG Processing 500/745 atomic regions from SNP 149941 to 150541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,044 DEBUG Processing 769/868 atomic regions from SNP 230455 to 231055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:59,086 DEBUG Processing 724/759 atomic regions from SNP 217100 to 217700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,093 DEBUG Processing 621/716 atomic regions from SNP 186295 to 186895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,154 DEBUG Processing 153/677 atomic regions from SNP 45752 to 46353 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,164 DEBUG Processing 501/745 atomic regions from SNP 150241 to 150841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,285 DEBUG Processing 770/868 atomic regions from SNP 230755 to 231355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:59,302 DEBUG Processing 725/759 atomic regions from SNP 217400 to 218000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,317 DEBUG Processing 622/716 atomic regions from SNP 186595 to 187195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,371 DEBUG Processing 154/677 atomic regions from SNP 46053 to 46654 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,375 DEBUG Processing 502/745 atomic regions from SNP 150541 to 151141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,520 DEBUG Processing 726/759 atomic regions from SNP 217700 to 218300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,524 DEBUG Processing 771/868 atomic regions from SNP 231055 to 231655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:59,545 DEBUG Processing 623/716 atomic regions from SNP 186895 to 187495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,587 DEBUG Processing 503/745 atomic regions from SNP 150841 to 151441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,603 DEBUG Processing 155/677 atomic regions from SNP 46354 to 46955 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,744 DEBUG Processing 727/759 atomic regions from SNP 218000 to 218600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,764 DEBUG Processing 772/868 atomic regions from SNP 231355 to 231955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:59,774 DEBUG Processing 624/716 atomic regions from SNP 187195 to 187795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,804 DEBUG Processing 504/745 atomic regions from SNP 151141 to 151741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,833 DEBUG Processing 156/677 atomic regions from SNP 46655 to 47256 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,969 DEBUG Processing 728/759 atomic regions from SNP 218300 to 218900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,008 DEBUG Processing 773/868 atomic regions from SNP 231655 to 232255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,015 DEBUG Processing 625/716 atomic regions from SNP 187495 to 188095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,025 DEBUG Processing 505/745 atomic regions from SNP 151441 to 152041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,060 DEBUG Processing 157/677 atomic regions from SNP 46956 to 47557 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,187 DEBUG Processing 729/759 atomic regions from SNP 218600 to 219200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,245 DEBUG Processing 506/745 atomic regions from SNP 151741 to 152341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,250 DEBUG Processing 774/868 atomic regions from SNP 231955 to 232555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,264 DEBUG Processing 626/716 atomic regions from SNP 187795 to 188395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,283 DEBUG Processing 158/677 atomic regions from SNP 47257 to 47858 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,408 DEBUG Processing 730/759 atomic regions from SNP 218900 to 219500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,466 DEBUG Processing 507/745 atomic regions from SNP 152041 to 152641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,499 DEBUG Processing 775/868 atomic regions from SNP 232255 to 232855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,516 DEBUG Processing 159/677 atomic regions from SNP 47558 to 48159 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,520 DEBUG Processing 627/716 atomic regions from SNP 188095 to 188695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,621 DEBUG Processing 731/759 atomic regions from SNP 219200 to 219800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,687 DEBUG Processing 508/745 atomic regions from SNP 152341 to 152941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,748 DEBUG Processing 776/868 atomic regions from SNP 232555 to 233155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,759 DEBUG Processing 160/677 atomic regions from SNP 47859 to 48460 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,761 DEBUG Processing 628/716 atomic regions from SNP 188395 to 188995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,836 DEBUG Processing 732/759 atomic regions from SNP 219500 to 220100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,904 DEBUG Processing 509/745 atomic regions from SNP 152641 to 153241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,982 DEBUG Processing 629/716 atomic regions from SNP 188695 to 189295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,992 DEBUG Processing 777/868 atomic regions from SNP 232855 to 233455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,997 DEBUG Processing 161/677 atomic regions from SNP 48160 to 48761 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,058 DEBUG Processing 733/759 atomic regions from SNP 219800 to 220400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,116 DEBUG Processing 510/745 atomic regions from SNP 152941 to 153541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,203 DEBUG Processing 630/716 atomic regions from SNP 188995 to 189595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,233 DEBUG Processing 162/677 atomic regions from SNP 48461 to 49062 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,239 DEBUG Processing 778/868 atomic regions from SNP 233155 to 233755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:01,280 DEBUG Processing 734/759 atomic regions from SNP 220100 to 220700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,328 DEBUG Processing 511/745 atomic regions from SNP 153241 to 153841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,433 DEBUG Processing 631/716 atomic regions from SNP 189295 to 189895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,484 DEBUG Processing 163/677 atomic regions from SNP 48762 to 49363 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,498 DEBUG Processing 779/868 atomic regions from SNP 233455 to 234055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:01,505 DEBUG Processing 735/759 atomic regions from SNP 220400 to 221000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,564 DEBUG Processing 512/745 atomic regions from SNP 153541 to 154141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,660 DEBUG Processing 632/716 atomic regions from SNP 189595 to 190195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,730 DEBUG Processing 164/677 atomic regions from SNP 49063 to 49664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,733 DEBUG Processing 736/759 atomic regions from SNP 220700 to 221300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,768 DEBUG Processing 780/868 atomic regions from SNP 233755 to 234355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:01,784 DEBUG Processing 513/745 atomic regions from SNP 153841 to 154441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,891 DEBUG Processing 633/716 atomic regions from SNP 189895 to 190495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,956 DEBUG Processing 737/759 atomic regions from SNP 221000 to 221600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,969 DEBUG Processing 165/677 atomic regions from SNP 49364 to 49965 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,007 DEBUG Processing 514/745 atomic regions from SNP 154141 to 154741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,034 DEBUG Processing 781/868 atomic regions from SNP 234055 to 234655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:02,132 DEBUG Processing 634/716 atomic regions from SNP 190195 to 190795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,185 DEBUG Processing 738/759 atomic regions from SNP 221300 to 221900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,200 DEBUG Processing 166/677 atomic regions from SNP 49665 to 50266 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,236 DEBUG Processing 515/745 atomic regions from SNP 154441 to 155041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,311 DEBUG Processing 782/868 atomic regions from SNP 234355 to 234955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:02,364 DEBUG Processing 635/716 atomic regions from SNP 190495 to 191095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,425 DEBUG Processing 167/677 atomic regions from SNP 49966 to 50567 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,436 DEBUG Processing 739/759 atomic regions from SNP 221600 to 222200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,460 DEBUG Processing 516/745 atomic regions from SNP 154741 to 155341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,568 DEBUG Processing 783/868 atomic regions from SNP 234655 to 235255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:02,599 DEBUG Processing 636/716 atomic regions from SNP 190795 to 191395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,653 DEBUG Processing 168/677 atomic regions from SNP 50267 to 50868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,676 DEBUG Processing 517/745 atomic regions from SNP 155041 to 155641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,691 DEBUG Processing 740/759 atomic regions from SNP 221900 to 222500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,811 DEBUG Processing 784/868 atomic regions from SNP 234955 to 235555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:02,837 DEBUG Processing 637/716 atomic regions from SNP 191095 to 191695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,882 DEBUG Processing 169/677 atomic regions from SNP 50568 to 51169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,896 DEBUG Processing 518/745 atomic regions from SNP 155341 to 155941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,951 DEBUG Processing 741/759 atomic regions from SNP 222200 to 222800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,051 DEBUG Processing 785/868 atomic regions from SNP 235255 to 235855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:03,097 DEBUG Processing 638/716 atomic regions from SNP 191395 to 191995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,115 DEBUG Processing 519/745 atomic regions from SNP 155641 to 156241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,117 DEBUG Processing 170/677 atomic regions from SNP 50869 to 51470 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,203 DEBUG Processing 742/759 atomic regions from SNP 222500 to 223100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,299 DEBUG Processing 786/868 atomic regions from SNP 235555 to 236155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:03,336 DEBUG Processing 520/745 atomic regions from SNP 155941 to 156541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,358 DEBUG Processing 171/677 atomic regions from SNP 51170 to 51771 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,374 DEBUG Processing 639/716 atomic regions from SNP 191695 to 192295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,453 DEBUG Processing 743/759 atomic regions from SNP 222800 to 223400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,537 DEBUG Processing 787/868 atomic regions from SNP 235855 to 236455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:03,550 DEBUG Processing 521/745 atomic regions from SNP 156241 to 156841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,584 DEBUG Processing 172/677 atomic regions from SNP 51471 to 52072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,645 DEBUG Processing 640/716 atomic regions from SNP 191995 to 192595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,704 DEBUG Processing 744/759 atomic regions from SNP 223100 to 223700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,760 DEBUG Processing 522/745 atomic regions from SNP 156541 to 157141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,770 DEBUG Processing 788/868 atomic regions from SNP 236155 to 236755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:03,804 DEBUG Processing 173/677 atomic regions from SNP 51772 to 52373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,908 DEBUG Processing 641/716 atomic regions from SNP 192295 to 192895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,934 DEBUG Processing 745/759 atomic regions from SNP 223400 to 224000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,975 DEBUG Processing 523/745 atomic regions from SNP 156841 to 157441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,015 DEBUG Processing 789/868 atomic regions from SNP 236455 to 237055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:04,031 DEBUG Processing 174/677 atomic regions from SNP 52073 to 52674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,181 DEBUG Processing 746/759 atomic regions from SNP 223700 to 224300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,182 DEBUG Processing 642/716 atomic regions from SNP 192595 to 193195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:04,194 DEBUG Processing 524/745 atomic regions from SNP 157141 to 157741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,270 DEBUG Processing 175/677 atomic regions from SNP 52374 to 52975 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,282 DEBUG Processing 790/868 atomic regions from SNP 236755 to 237355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:04,409 DEBUG Processing 525/745 atomic regions from SNP 157441 to 158041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,436 DEBUG Processing 747/759 atomic regions from SNP 224000 to 224600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,437 DEBUG Processing 643/716 atomic regions from SNP 192895 to 193495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:04,521 DEBUG Processing 176/677 atomic regions from SNP 52675 to 53276 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,549 DEBUG Processing 791/868 atomic regions from SNP 237055 to 237655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:04,624 DEBUG Processing 526/745 atomic regions from SNP 157741 to 158341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,692 DEBUG Processing 748/759 atomic regions from SNP 224300 to 224900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,695 DEBUG Processing 644/716 atomic regions from SNP 193195 to 193795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:04,771 DEBUG Processing 177/677 atomic regions from SNP 52976 to 53577 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,830 DEBUG Processing 792/868 atomic regions from SNP 237355 to 237955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:04,840 DEBUG Processing 527/745 atomic regions from SNP 158041 to 158641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,950 DEBUG Processing 749/759 atomic regions from SNP 224600 to 225200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,955 DEBUG Processing 645/716 atomic regions from SNP 193495 to 194095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,024 DEBUG Processing 178/677 atomic regions from SNP 53277 to 53878 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,061 DEBUG Processing 528/745 atomic regions from SNP 158341 to 158941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,093 DEBUG Processing 793/868 atomic regions from SNP 237655 to 238255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,206 DEBUG Processing 646/716 atomic regions from SNP 193795 to 194395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,208 DEBUG Processing 750/759 atomic regions from SNP 224900 to 225500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,253 DEBUG Processing 179/677 atomic regions from SNP 53578 to 54179 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,289 DEBUG Processing 529/745 atomic regions from SNP 158641 to 159241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,341 DEBUG Processing 794/868 atomic regions from SNP 237955 to 238555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,444 DEBUG Processing 647/716 atomic regions from SNP 194095 to 194695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,460 DEBUG Processing 751/759 atomic regions from SNP 225200 to 225800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,484 DEBUG Processing 180/677 atomic regions from SNP 53879 to 54480 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,528 DEBUG Processing 530/745 atomic regions from SNP 158941 to 159541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,586 DEBUG Processing 795/868 atomic regions from SNP 238255 to 238855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,680 DEBUG Processing 648/716 atomic regions from SNP 194395 to 194995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,706 DEBUG Processing 752/759 atomic regions from SNP 225500 to 226100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,707 DEBUG Processing 181/677 atomic regions from SNP 54180 to 54781 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,768 DEBUG Processing 531/745 atomic regions from SNP 159241 to 159841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,833 DEBUG Processing 796/868 atomic regions from SNP 238555 to 239155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,921 DEBUG Processing 649/716 atomic regions from SNP 194695 to 195295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,939 DEBUG Processing 753/759 atomic regions from SNP 225800 to 226400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,944 DEBUG Processing 182/677 atomic regions from SNP 54481 to 55082 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,016 DEBUG Processing 532/745 atomic regions from SNP 159541 to 160141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,076 DEBUG Processing 797/868 atomic regions from SNP 238855 to 239455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:06,155 DEBUG Processing 754/759 atomic regions from SNP 226100 to 226700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,160 DEBUG Processing 650/716 atomic regions from SNP 194995 to 195595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,166 DEBUG Processing 183/677 atomic regions from SNP 54782 to 55383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,254 DEBUG Processing 533/745 atomic regions from SNP 159841 to 160441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,319 DEBUG Processing 798/868 atomic regions from SNP 239155 to 239755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:06,374 DEBUG Processing 755/759 atomic regions from SNP 226400 to 227000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,385 DEBUG Processing 184/677 atomic regions from SNP 55083 to 55684 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,396 DEBUG Processing 651/716 atomic regions from SNP 195295 to 195895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,491 DEBUG Processing 534/745 atomic regions from SNP 160141 to 160741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,564 DEBUG Processing 799/868 atomic regions from SNP 239455 to 240055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:06,588 DEBUG Processing 756/759 atomic regions from SNP 226700 to 227300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,612 DEBUG Processing 185/677 atomic regions from SNP 55384 to 55985 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,635 DEBUG Processing 652/716 atomic regions from SNP 195595 to 196195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,728 DEBUG Processing 535/745 atomic regions from SNP 160441 to 161041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,803 DEBUG Processing 757/759 atomic regions from SNP 227000 to 227600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,812 DEBUG Processing 800/868 atomic regions from SNP 239755 to 240355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:06,838 DEBUG Processing 186/677 atomic regions from SNP 55685 to 56286 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,874 DEBUG Processing 653/716 atomic regions from SNP 195895 to 196495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,971 DEBUG Processing 536/745 atomic regions from SNP 160741 to 161341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,023 DEBUG Processing 758/759 atomic regions from SNP 227300 to 227900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,054 DEBUG Processing 801/868 atomic regions from SNP 240055 to 240655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:07,060 DEBUG Processing 187/677 atomic regions from SNP 55986 to 56587 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,115 DEBUG Processing 654/716 atomic regions from SNP 196195 to 196795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,216 DEBUG Processing 537/745 atomic regions from SNP 161041 to 161641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,247 DEBUG Processing 759/759 atomic regions from SNP 227600 to 228200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,286 DEBUG Processing 188/677 atomic regions from SNP 56287 to 56888 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,302 DEBUG Processing 802/868 atomic regions from SNP 240355 to 240955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:07,355 DEBUG Processing 655/716 atomic regions from SNP 196495 to 197095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,376 DEBUG Unique SNPs positions in subchromosome 1: 228201 2025-01-31 09:53:07,461 DEBUG Processing 538/745 atomic regions from SNP 161341 to 161941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,514 DEBUG Processing 189/677 atomic regions from SNP 56588 to 57189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,550 DEBUG Processing 803/868 atomic regions from SNP 240655 to 241255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:07,605 DEBUG Processing 656/716 atomic regions from SNP 196795 to 197395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,703 DEBUG Processing 539/745 atomic regions from SNP 161641 to 162241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,732 DEBUG Processing 190/677 atomic regions from SNP 56889 to 57490 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,789 DEBUG Processing 804/868 atomic regions from SNP 240955 to 241555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:07,850 DEBUG Processing 657/716 atomic regions from SNP 197095 to 197695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,926 DEBUG Processing 540/745 atomic regions from SNP 161941 to 162541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,948 DEBUG Processing 191/677 atomic regions from SNP 57190 to 57791 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,030 DEBUG Processing 805/868 atomic regions from SNP 241255 to 241855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:08,115 DEBUG Processing 658/716 atomic regions from SNP 197395 to 197995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,161 DEBUG Processing 192/677 atomic regions from SNP 57491 to 58092 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,173 DEBUG Processing 541/745 atomic regions from SNP 162241 to 162841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,266 DEBUG Processing 806/868 atomic regions from SNP 241555 to 242155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:08,366 DEBUG Processing 659/716 atomic regions from SNP 197695 to 198295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,375 DEBUG Processing 193/677 atomic regions from SNP 57792 to 58393 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,410 DEBUG Processing 542/745 atomic regions from SNP 162541 to 163141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,498 DEBUG Processing 807/868 atomic regions from SNP 241855 to 242455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:08,589 DEBUG Processing 194/677 atomic regions from SNP 58093 to 58694 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,597 DEBUG Processing 660/716 atomic regions from SNP 197995 to 198595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,618 DEBUG Processing 543/745 atomic regions from SNP 162841 to 163441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,736 DEBUG Processing 808/868 atomic regions from SNP 242155 to 242755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:08,806 DEBUG Processing 195/677 atomic regions from SNP 58394 to 58995 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,829 DEBUG Processing 544/745 atomic regions from SNP 163141 to 163741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,935 DEBUG Processing 661/716 atomic regions from SNP 198295 to 198895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,973 DEBUG Processing 809/868 atomic regions from SNP 242455 to 243055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:09,020 DEBUG Processing 196/677 atomic regions from SNP 58695 to 59296 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,037 DEBUG Processing 545/745 atomic regions from SNP 163441 to 164041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,193 DEBUG Processing 662/716 atomic regions from SNP 198595 to 199195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:09,218 DEBUG Processing 810/868 atomic regions from SNP 242755 to 243355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:09,245 DEBUG Processing 197/677 atomic regions from SNP 58996 to 59597 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,257 DEBUG Processing 546/745 atomic regions from SNP 163741 to 164341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,429 DEBUG Processing 663/716 atomic regions from SNP 198895 to 199495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:09,462 DEBUG Processing 811/868 atomic regions from SNP 243055 to 243655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:09,468 DEBUG Processing 198/677 atomic regions from SNP 59297 to 59898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,473 DEBUG Processing 547/745 atomic regions from SNP 164041 to 164641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,654 DEBUG Processing 664/716 atomic regions from SNP 199195 to 199795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:09,690 DEBUG Processing 548/745 atomic regions from SNP 164341 to 164941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,691 DEBUG Processing 199/677 atomic regions from SNP 59598 to 60199 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,705 DEBUG Processing 812/868 atomic regions from SNP 243355 to 243955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:09,878 DEBUG Processing 665/716 atomic regions from SNP 199495 to 200095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:09,910 DEBUG Processing 549/745 atomic regions from SNP 164641 to 165241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,931 DEBUG Processing 200/677 atomic regions from SNP 59899 to 60500 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,945 DEBUG Processing 813/868 atomic regions from SNP 243655 to 244255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:10,098 DEBUG Processing 666/716 atomic regions from SNP 199795 to 200395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,122 DEBUG Processing 550/745 atomic regions from SNP 164941 to 165541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,175 DEBUG Processing 201/677 atomic regions from SNP 60200 to 60801 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,186 DEBUG Processing 814/868 atomic regions from SNP 243955 to 244555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:10,320 DEBUG Processing 667/716 atomic regions from SNP 200095 to 200695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,336 DEBUG Processing 551/745 atomic regions from SNP 165241 to 165841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,406 DEBUG Processing 202/677 atomic regions from SNP 60501 to 61102 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,434 DEBUG Processing 815/868 atomic regions from SNP 244255 to 244855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:10,547 DEBUG Processing 668/716 atomic regions from SNP 200395 to 200995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,550 DEBUG Processing 552/745 atomic regions from SNP 165541 to 166141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,634 DEBUG Processing 203/677 atomic regions from SNP 60802 to 61403 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,681 DEBUG Processing 816/868 atomic regions from SNP 244555 to 245155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:10,773 DEBUG Processing 553/745 atomic regions from SNP 165841 to 166441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,801 DEBUG Processing 669/716 atomic regions from SNP 200695 to 201295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,861 DEBUG Processing 204/677 atomic regions from SNP 61103 to 61704 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,927 DEBUG Processing 817/868 atomic regions from SNP 244855 to 245455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:10,994 DEBUG Processing 554/745 atomic regions from SNP 166141 to 166741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,025 DEBUG Processing 670/716 atomic regions from SNP 200995 to 201595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,082 DEBUG Processing 205/677 atomic regions from SNP 61404 to 62005 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,113 DEBUG Subchromosome time: 215.24051566806156, subchromosome SNPs: 228201 2025-01-31 09:53:11,114 DEBUG Estimated BADs: [3.06, 1.02, 3.06, 1.53, 6.13, 3.06, 1.02, 1.53, 3.06, 6.13, 1.02, 3.06, 6.13, 15.32, 3.06, 1.02, 1.53, 3.06, 9.19, 3.06, 1.53] SNP counts: [20860, 2709, 27697, 14396, 6341, 5991, 4494, 12922, 4582, 8304, 1798, 18604, 7301, 3801, 34796, 6871, 16229, 23994, 3307, 1494, 1710] SNP IDs counts: [20860, 2709, 27697, 14396, 6341, 5991, 4494, 12922, 4582, 8304, 1798, 18604, 7301, 3801, 34796, 6871, 16229, 23994, 3307, 1494, 1710] Critical gap: 613049bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 14.84Mbp, 16.46Mbp, 31.96Mbp, 40.11Mbp, 43.48Mbp, 46.74Mbp, 49.43Mbp, 56.90Mbp, 59.78Mbp, 64.17Mbp, 65.30Mbp, 75.57Mbp, 79.60Mbp, 81.56Mbp, 100.87Mbp, 104.84Mbp, 113.86Mbp, 126.93Mbp, 128.67Mbp, 129.56Mbp, 130.69Mbp] 2025-01-31 09:53:11,114 DEBUG chr10 time: 215.2410411320161 s 2025-01-31 09:53:11,165 DEBUG Processing 818/868 atomic regions from SNP 245155 to 245755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:11,209 DEBUG Processing 555/745 atomic regions from SNP 166441 to 167041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,236 DEBUG chr10: Fitting background model for 21 segments 2025-01-31 09:53:11,251 DEBUG Processing 671/716 atomic regions from SNP 201295 to 201895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,307 DEBUG Processing 206/677 atomic regions from SNP 61705 to 62306 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,408 DEBUG Processing 819/868 atomic regions from SNP 245455 to 246055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:11,427 DEBUG Processing 556/745 atomic regions from SNP 166741 to 167341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,483 DEBUG Processing 672/716 atomic regions from SNP 201595 to 202195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,531 DEBUG Processing 207/677 atomic regions from SNP 62006 to 62607 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,643 DEBUG Processing 557/745 atomic regions from SNP 167041 to 167641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,649 DEBUG Processing 820/868 atomic regions from SNP 245755 to 246355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:11,720 DEBUG Processing 673/716 atomic regions from SNP 201895 to 202495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,752 DEBUG Processing 208/677 atomic regions from SNP 62307 to 62908 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,864 DEBUG Processing 558/745 atomic regions from SNP 167341 to 167941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,892 DEBUG Processing 821/868 atomic regions from SNP 246055 to 246655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:11,954 DEBUG Processing 674/716 atomic regions from SNP 202195 to 202795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,974 DEBUG Processing 209/677 atomic regions from SNP 62608 to 63209 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,083 DEBUG Processing 559/745 atomic regions from SNP 167641 to 168241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,132 DEBUG Processing 822/868 atomic regions from SNP 246355 to 246955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:12,184 DEBUG Processing 675/716 atomic regions from SNP 202495 to 203095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,213 DEBUG Processing 210/677 atomic regions from SNP 62909 to 63510 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,298 DEBUG Processing 560/745 atomic regions from SNP 167941 to 168541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,371 DEBUG Processing 823/868 atomic regions from SNP 246655 to 247255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:12,416 DEBUG Processing 676/716 atomic regions from SNP 202795 to 203395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,450 DEBUG Processing 211/677 atomic regions from SNP 63210 to 63811 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,520 DEBUG Processing 561/745 atomic regions from SNP 168241 to 168841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,624 DEBUG Processing 824/868 atomic regions from SNP 246955 to 247555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:12,657 DEBUG Processing 677/716 atomic regions from SNP 203095 to 203695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,702 DEBUG Processing 212/677 atomic regions from SNP 63511 to 64112 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,737 DEBUG Processing 562/745 atomic regions from SNP 168541 to 169141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,868 DEBUG Processing 825/868 atomic regions from SNP 247255 to 247855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:12,899 DEBUG Processing 678/716 atomic regions from SNP 203395 to 203995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,923 DEBUG Processing 213/677 atomic regions from SNP 63812 to 64413 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,948 DEBUG Processing 563/745 atomic regions from SNP 168841 to 169441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,108 DEBUG Processing 826/868 atomic regions from SNP 247555 to 248155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:13,129 DEBUG Processing 679/716 atomic regions from SNP 203695 to 204295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,140 DEBUG Processing 214/677 atomic regions from SNP 64113 to 64714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,171 DEBUG Processing 564/745 atomic regions from SNP 169141 to 169741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,355 DEBUG Processing 827/868 atomic regions from SNP 247855 to 248455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:13,362 DEBUG Processing 680/716 atomic regions from SNP 203995 to 204595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,369 DEBUG Processing 215/677 atomic regions from SNP 64414 to 65015 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,392 DEBUG Processing 565/745 atomic regions from SNP 169441 to 170041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,593 DEBUG Processing 216/677 atomic regions from SNP 64715 to 65316 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,599 DEBUG Processing 681/716 atomic regions from SNP 204295 to 204895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,613 DEBUG Processing 828/868 atomic regions from SNP 248155 to 248755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:13,613 DEBUG Processing 566/745 atomic regions from SNP 169741 to 170341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,817 DEBUG Processing 217/677 atomic regions from SNP 65016 to 65617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,830 DEBUG Processing 682/716 atomic regions from SNP 204595 to 205195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,833 DEBUG Processing 567/745 atomic regions from SNP 170041 to 170641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,862 DEBUG Processing 829/868 atomic regions from SNP 248455 to 249055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:14,044 DEBUG Processing 218/677 atomic regions from SNP 65317 to 65918 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,052 DEBUG Processing 568/745 atomic regions from SNP 170341 to 170941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,059 DEBUG Processing 683/716 atomic regions from SNP 204895 to 205495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,115 DEBUG Processing 830/868 atomic regions from SNP 248755 to 249355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:14,271 DEBUG Processing 569/745 atomic regions from SNP 170641 to 171241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,285 DEBUG Processing 219/677 atomic regions from SNP 65618 to 66219 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,289 DEBUG Processing 684/716 atomic regions from SNP 205195 to 205795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,359 DEBUG Processing 831/868 atomic regions from SNP 249055 to 249655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:14,493 DEBUG Processing 570/745 atomic regions from SNP 170941 to 171541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,524 DEBUG Processing 220/677 atomic regions from SNP 65919 to 66520 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,541 DEBUG Processing 685/716 atomic regions from SNP 205495 to 206095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,597 DEBUG Processing 832/868 atomic regions from SNP 249355 to 249955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:14,711 DEBUG Processing 571/745 atomic regions from SNP 171241 to 171841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,771 DEBUG Processing 221/677 atomic regions from SNP 66220 to 66821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,791 DEBUG Processing 686/716 atomic regions from SNP 205795 to 206395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,833 DEBUG Processing 833/868 atomic regions from SNP 249655 to 250255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:14,924 DEBUG Processing 572/745 atomic regions from SNP 171541 to 172141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,956 DEBUG Segmenting atomic regions: 2025-01-31 09:53:15,014 DEBUG Processing 222/677 atomic regions from SNP 66521 to 67122 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,018 DEBUG Processing 687/716 atomic regions from SNP 206095 to 206695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:15,053 DEBUG Processing 1/734 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,069 DEBUG Processing 834/868 atomic regions from SNP 249955 to 250555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:15,136 DEBUG Processing 573/745 atomic regions from SNP 171841 to 172441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,248 DEBUG Processing 688/716 atomic regions from SNP 206395 to 206995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:15,264 DEBUG Processing 223/677 atomic regions from SNP 66822 to 67423 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,276 DEBUG Processing 2/734 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,311 DEBUG Processing 835/868 atomic regions from SNP 250255 to 250855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:15,352 DEBUG Processing 574/745 atomic regions from SNP 172141 to 172741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,481 DEBUG Processing 689/716 atomic regions from SNP 206695 to 207295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:15,497 DEBUG Processing 3/734 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,516 DEBUG Processing 224/677 atomic regions from SNP 67123 to 67724 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,552 DEBUG Processing 836/868 atomic regions from SNP 250555 to 251155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:15,568 DEBUG Processing 575/745 atomic regions from SNP 172441 to 173041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,718 DEBUG Processing 4/734 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,738 DEBUG Processing 690/716 atomic regions from SNP 206995 to 207595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:15,750 DEBUG Processing 225/677 atomic regions from SNP 67424 to 68025 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,783 DEBUG Processing 576/745 atomic regions from SNP 172741 to 173341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,794 DEBUG Processing 837/868 atomic regions from SNP 250855 to 251455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:15,938 DEBUG Processing 5/734 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,975 DEBUG Processing 226/677 atomic regions from SNP 67725 to 68326 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,990 DEBUG Processing 691/716 atomic regions from SNP 207295 to 207895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,001 DEBUG Processing 577/745 atomic regions from SNP 173041 to 173641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,039 DEBUG Processing 838/868 atomic regions from SNP 251155 to 251755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:16,158 DEBUG Processing 6/734 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,198 DEBUG Processing 227/677 atomic regions from SNP 68026 to 68627 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,221 DEBUG Processing 578/745 atomic regions from SNP 173341 to 173941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,253 DEBUG Processing 692/716 atomic regions from SNP 207595 to 208195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,285 DEBUG Processing 839/868 atomic regions from SNP 251455 to 252055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:16,377 DEBUG Processing 7/734 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,420 DEBUG Processing 228/677 atomic regions from SNP 68327 to 68928 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,440 DEBUG Processing 579/745 atomic regions from SNP 173641 to 174241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,517 DEBUG Processing 693/716 atomic regions from SNP 207895 to 208495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,531 DEBUG Processing 840/868 atomic regions from SNP 251755 to 252355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:16,601 DEBUG Processing 8/734 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,657 DEBUG Processing 229/677 atomic regions from SNP 68628 to 69229 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,657 DEBUG Processing 580/745 atomic regions from SNP 173941 to 174541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,775 DEBUG Processing 841/868 atomic regions from SNP 252055 to 252655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:16,782 DEBUG Processing 694/716 atomic regions from SNP 208195 to 208795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,826 DEBUG Processing 9/734 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,869 DEBUG Processing 581/745 atomic regions from SNP 174241 to 174841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,893 DEBUG Processing 230/677 atomic regions from SNP 68929 to 69530 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,017 DEBUG Processing 842/868 atomic regions from SNP 252355 to 252955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:17,043 DEBUG Processing 695/716 atomic regions from SNP 208495 to 209095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,050 DEBUG Processing 10/734 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,086 DEBUG Processing 582/745 atomic regions from SNP 174541 to 175141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,119 DEBUG Processing 231/677 atomic regions from SNP 69230 to 69831 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,259 DEBUG Processing 843/868 atomic regions from SNP 252655 to 253255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:17,276 DEBUG Processing 11/734 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,292 DEBUG Processing 696/716 atomic regions from SNP 208795 to 209395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,307 DEBUG Processing 583/745 atomic regions from SNP 174841 to 175441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,345 DEBUG Processing 232/677 atomic regions from SNP 69531 to 70132 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,507 DEBUG Processing 844/868 atomic regions from SNP 252955 to 253555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:17,510 DEBUG Processing 12/734 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,531 DEBUG Processing 584/745 atomic regions from SNP 175141 to 175741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,545 DEBUG Processing 697/716 atomic regions from SNP 209095 to 209695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,576 DEBUG Processing 233/677 atomic regions from SNP 69832 to 70433 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,743 DEBUG Processing 13/734 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,759 DEBUG Processing 585/745 atomic regions from SNP 175441 to 176041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,760 DEBUG Processing 845/868 atomic regions from SNP 253255 to 253855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:17,802 DEBUG Processing 698/716 atomic regions from SNP 209395 to 209995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,806 DEBUG Processing 234/677 atomic regions from SNP 70133 to 70734 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,965 DEBUG Processing 14/734 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,983 DEBUG Processing 586/745 atomic regions from SNP 175741 to 176341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,003 DEBUG Processing 846/868 atomic regions from SNP 253555 to 254155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:18,033 DEBUG Processing 235/677 atomic regions from SNP 70434 to 71035 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,062 DEBUG Processing 699/716 atomic regions from SNP 209695 to 210295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,188 DEBUG Processing 15/734 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,203 DEBUG Processing 587/745 atomic regions from SNP 176041 to 176641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,260 DEBUG Processing 847/868 atomic regions from SNP 253855 to 254455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:18,271 DEBUG Processing 236/677 atomic regions from SNP 70735 to 71336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,326 DEBUG Processing 700/716 atomic regions from SNP 209995 to 210595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,407 DEBUG Processing 16/734 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,422 DEBUG Processing 588/745 atomic regions from SNP 176341 to 176941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,495 DEBUG Processing 237/677 atomic regions from SNP 71036 to 71637 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,506 DEBUG Processing 848/868 atomic regions from SNP 254155 to 254755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:18,571 DEBUG Processing 701/716 atomic regions from SNP 210295 to 210895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,622 DEBUG Processing 17/734 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,642 DEBUG Processing 589/745 atomic regions from SNP 176641 to 177241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,715 DEBUG Processing 238/677 atomic regions from SNP 71337 to 71938 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,745 DEBUG Processing 849/868 atomic regions from SNP 254455 to 255055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:18,787 DEBUG Processing 702/716 atomic regions from SNP 210595 to 211195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,833 DEBUG Processing 18/734 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,864 DEBUG Processing 590/745 atomic regions from SNP 176941 to 177541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,933 DEBUG Processing 239/677 atomic regions from SNP 71638 to 72239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,979 DEBUG Processing 850/868 atomic regions from SNP 254755 to 255355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:19,026 DEBUG Processing 703/716 atomic regions from SNP 210895 to 211495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,043 DEBUG Processing 19/734 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,087 DEBUG Processing 591/745 atomic regions from SNP 177241 to 177841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,150 DEBUG Processing 240/677 atomic regions from SNP 71939 to 72540 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,219 DEBUG Processing 851/868 atomic regions from SNP 255055 to 255655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:19,257 DEBUG Processing 20/734 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,270 DEBUG Processing 704/716 atomic regions from SNP 211195 to 211795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,317 DEBUG Processing 592/745 atomic regions from SNP 177541 to 178141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,365 DEBUG Processing 241/677 atomic regions from SNP 72240 to 72841 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,469 DEBUG Processing 21/734 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,470 DEBUG Processing 852/868 atomic regions from SNP 255355 to 255955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:19,496 DEBUG Processing 705/716 atomic regions from SNP 211495 to 212095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,540 DEBUG Processing 593/745 atomic regions from SNP 177841 to 178441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,582 DEBUG Processing 242/677 atomic regions from SNP 72541 to 73142 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,684 DEBUG Processing 22/734 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,718 DEBUG Processing 853/868 atomic regions from SNP 255655 to 256255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:19,734 DEBUG Processing 706/716 atomic regions from SNP 211795 to 212395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,783 DEBUG Processing 594/745 atomic regions from SNP 178141 to 178741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,818 DEBUG Processing 243/677 atomic regions from SNP 72842 to 73443 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,894 DEBUG Processing 23/734 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,957 DEBUG Processing 854/868 atomic regions from SNP 255955 to 256555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:19,974 DEBUG Processing 707/716 atomic regions from SNP 212095 to 212695 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,019 DEBUG Processing 595/745 atomic regions from SNP 178441 to 179041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,056 DEBUG Processing 244/677 atomic regions from SNP 73143 to 73744 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,105 DEBUG Processing 24/734 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,196 DEBUG Processing 855/868 atomic regions from SNP 256255 to 256855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:20,228 DEBUG Processing 708/716 atomic regions from SNP 212395 to 212995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,243 DEBUG Processing 596/745 atomic regions from SNP 178741 to 179341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,297 DEBUG Processing 245/677 atomic regions from SNP 73444 to 74045 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,316 DEBUG Processing 25/734 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,432 DEBUG Processing 856/868 atomic regions from SNP 256555 to 257155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:20,474 DEBUG Processing 709/716 atomic regions from SNP 212695 to 213295 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,476 DEBUG Processing 597/745 atomic regions from SNP 179041 to 179641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,513 DEBUG Processing 246/677 atomic regions from SNP 73745 to 74346 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,529 DEBUG Processing 26/734 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,668 DEBUG Processing 857/868 atomic regions from SNP 256855 to 257455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:20,713 DEBUG Processing 710/716 atomic regions from SNP 212995 to 213595 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,728 DEBUG Processing 247/677 atomic regions from SNP 74046 to 74647 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,731 DEBUG Processing 598/745 atomic regions from SNP 179341 to 179941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,744 DEBUG Processing 27/734 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,904 DEBUG Processing 858/868 atomic regions from SNP 257155 to 257755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:20,943 DEBUG Processing 711/716 atomic regions from SNP 213295 to 213895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,947 DEBUG Processing 248/677 atomic regions from SNP 74347 to 74948 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,972 DEBUG Processing 28/734 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,986 DEBUG Processing 599/745 atomic regions from SNP 179641 to 180241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,137 DEBUG Processing 859/868 atomic regions from SNP 257455 to 258055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:21,188 DEBUG Processing 712/716 atomic regions from SNP 213595 to 214195 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,189 DEBUG Processing 249/677 atomic regions from SNP 74648 to 75249 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,201 DEBUG Processing 29/734 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,239 DEBUG Processing 600/745 atomic regions from SNP 179941 to 180541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,368 DEBUG Processing 860/868 atomic regions from SNP 257755 to 258355 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:21,419 DEBUG Processing 30/734 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,434 DEBUG Processing 713/716 atomic regions from SNP 213895 to 214495 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,440 DEBUG Processing 250/677 atomic regions from SNP 74949 to 75550 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,493 DEBUG Processing 601/745 atomic regions from SNP 180241 to 180841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,608 DEBUG Processing 861/868 atomic regions from SNP 258055 to 258655 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:21,635 DEBUG Processing 31/734 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,667 DEBUG Processing 714/716 atomic regions from SNP 214195 to 214795 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,693 DEBUG Processing 251/677 atomic regions from SNP 75250 to 75851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,747 DEBUG Processing 602/745 atomic regions from SNP 180541 to 181141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,847 DEBUG Processing 32/734 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,851 DEBUG Processing 862/868 atomic regions from SNP 258355 to 258955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:21,899 DEBUG Processing 715/716 atomic regions from SNP 214495 to 215095 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,934 DEBUG Processing 252/677 atomic regions from SNP 75551 to 76152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,990 DEBUG Processing 603/745 atomic regions from SNP 180841 to 181441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,060 DEBUG Processing 33/734 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,093 DEBUG Processing 863/868 atomic regions from SNP 258655 to 259255 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:22,126 DEBUG Processing 716/716 atomic regions from SNP 214795 to 215395 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:22,149 DEBUG Processing 253/677 atomic regions from SNP 75852 to 76453 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,229 DEBUG Processing 604/745 atomic regions from SNP 181141 to 181741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,253 DEBUG Unique SNPs positions in subchromosome 3: 215396 2025-01-31 09:53:22,274 DEBUG Processing 34/734 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,343 DEBUG Processing 864/868 atomic regions from SNP 258955 to 259555 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:22,370 DEBUG Processing 254/677 atomic regions from SNP 76153 to 76754 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,459 DEBUG Processing 605/745 atomic regions from SNP 181441 to 182041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,484 DEBUG Processing 35/734 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,581 DEBUG Processing 865/868 atomic regions from SNP 259255 to 259855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:22,585 DEBUG Processing 255/677 atomic regions from SNP 76454 to 77055 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,697 DEBUG Processing 606/745 atomic regions from SNP 181741 to 182341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,698 DEBUG Processing 36/734 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,804 DEBUG Processing 256/677 atomic regions from SNP 76755 to 77356 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,828 DEBUG Processing 866/868 atomic regions from SNP 259555 to 260155 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:22,915 DEBUG Processing 37/734 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,932 DEBUG Processing 607/745 atomic regions from SNP 182041 to 182641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,023 DEBUG Processing 257/677 atomic regions from SNP 77056 to 77657 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,085 DEBUG Processing 867/868 atomic regions from SNP 259855 to 260455 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:23,131 DEBUG Processing 38/734 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,169 DEBUG Processing 608/745 atomic regions from SNP 182341 to 182941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,245 DEBUG Processing 258/677 atomic regions from SNP 77357 to 77958 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,334 DEBUG Processing 868/868 atomic regions from SNP 260155 to 260755 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:23,350 DEBUG Processing 39/734 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,414 DEBUG Processing 609/745 atomic regions from SNP 182641 to 183241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,466 DEBUG Unique SNPs positions in subchromosome 1: 260756 2025-01-31 09:53:23,479 DEBUG Processing 259/677 atomic regions from SNP 77658 to 78259 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,568 DEBUG Processing 40/734 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,655 DEBUG Processing 610/745 atomic regions from SNP 182941 to 183541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,711 DEBUG Processing 260/677 atomic regions from SNP 77959 to 78560 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,778 DEBUG Processing 41/734 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,896 DEBUG Processing 611/745 atomic regions from SNP 183241 to 183841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,953 DEBUG Processing 261/677 atomic regions from SNP 78260 to 78861 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,989 DEBUG Processing 42/734 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,144 DEBUG Processing 612/745 atomic regions from SNP 183541 to 184141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,192 DEBUG Processing 262/677 atomic regions from SNP 78561 to 79162 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,201 DEBUG Processing 43/734 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,363 DEBUG Processing 613/745 atomic regions from SNP 183841 to 184441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,412 DEBUG Processing 44/734 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,429 DEBUG Processing 263/677 atomic regions from SNP 78862 to 79463 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,573 DEBUG Processing 614/745 atomic regions from SNP 184141 to 184741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,625 DEBUG Processing 45/734 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,673 DEBUG Processing 264/677 atomic regions from SNP 79163 to 79764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,779 DEBUG Processing 615/745 atomic regions from SNP 184441 to 185041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,843 DEBUG Processing 46/734 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,910 DEBUG Processing 265/677 atomic regions from SNP 79464 to 80065 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,988 DEBUG Processing 616/745 atomic regions from SNP 184741 to 185341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,056 DEBUG Processing 47/734 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,138 DEBUG Processing 266/677 atomic regions from SNP 79765 to 80366 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,199 DEBUG Processing 617/745 atomic regions from SNP 185041 to 185641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,269 DEBUG Processing 48/734 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,380 DEBUG Processing 267/677 atomic regions from SNP 80066 to 80667 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,410 DEBUG Processing 618/745 atomic regions from SNP 185341 to 185941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,479 DEBUG Processing 49/734 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,619 DEBUG Processing 619/745 atomic regions from SNP 185641 to 186241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,621 DEBUG Processing 268/677 atomic regions from SNP 80367 to 80968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,690 DEBUG Processing 50/734 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,827 DEBUG Processing 620/745 atomic regions from SNP 185941 to 186541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,849 DEBUG Processing 269/677 atomic regions from SNP 80668 to 81269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,903 DEBUG Processing 51/734 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,040 DEBUG Processing 621/745 atomic regions from SNP 186241 to 186841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,059 DEBUG Processing 270/677 atomic regions from SNP 80969 to 81570 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,114 DEBUG Processing 52/734 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,251 DEBUG Processing 622/745 atomic regions from SNP 186541 to 187141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,262 DEBUG Processing 271/677 atomic regions from SNP 81270 to 81871 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,325 DEBUG Processing 53/734 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,463 DEBUG Processing 623/745 atomic regions from SNP 186841 to 187441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,465 DEBUG Processing 272/677 atomic regions from SNP 81571 to 82172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,535 DEBUG Processing 54/734 atomic regions from SNP 15953 to 16554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,677 DEBUG Processing 624/745 atomic regions from SNP 187141 to 187741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,677 DEBUG Processing 273/677 atomic regions from SNP 81872 to 82473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,747 DEBUG Processing 55/734 atomic regions from SNP 16254 to 16855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,896 DEBUG Processing 274/677 atomic regions from SNP 82173 to 82773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,915 DEBUG Processing 625/745 atomic regions from SNP 187441 to 188041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,959 DEBUG Processing 56/734 atomic regions from SNP 16555 to 17156 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,122 DEBUG Processing 275/677 atomic regions from SNP 82473 to 83073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,150 DEBUG Processing 626/745 atomic regions from SNP 187741 to 188341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,175 DEBUG Processing 57/734 atomic regions from SNP 16856 to 17457 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,335 DEBUG Processing 276/677 atomic regions from SNP 82773 to 83373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,376 DEBUG Processing 627/745 atomic regions from SNP 188041 to 188641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,388 DEBUG Processing 58/734 atomic regions from SNP 17157 to 17758 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,451 DEBUG Subchromosome time: 209.45108128793072, subchromosome SNPs: 215396 2025-01-31 09:53:27,451 DEBUG Estimated BADs: [3.54, 10.62, 3.54, 1.18, 14.16, 1.77, 7.08, 1.77, 10.62, 0.00, 1.77, 7.08, 1.77, 7.08, 1.18, 3.54, 1.77, 10.62, 3.54, 0.89, 1.77, 0.89, 3.54, 1.77, 3.54, 7.08, 3.54, 0.89, 1.77, 0.71, 3.54, 1.77, 3.54, 10.62, 3.54, 7.08] SNP counts: [1933, 1261, 3483, 4120, 351, 3475, 2374, 2436, 2015, 43, 1577, 3053, 1184, 8131, 1795, 13022, 4116, 2746, 11724, 5137, 6780, 5237, 11447, 15942, 2705, 2101, 8532, 6165, 8694, 3304, 14676, 7507, 33961, 2959, 24597, 8304] SNP IDs counts: [1933, 1261, 3483, 4120, 351, 3475, 2374, 2436, 2015, 43, 1577, 3053, 1184, 8131, 1795, 13022, 4116, 2746, 11724, 5137, 6780, 5237, 11447, 15942, 2705, 2101, 8532, 6165, 8694, 3304, 14676, 7507, 33961, 2959, 24597, 8304] Critical gap: 662319bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.43Mbp, 5.11Mbp, 7.30Mbp, 12.88Mbp, 13.06Mbp, 15.94Mbp, 17.22Mbp, 19.00Mbp, 20.10Mbp[0.68Mbp], 21.44Mbp[1.33Mbp], 24.29Mbp, 25.95Mbp, 26.73Mbp, 31.18Mbp, 33.68Mbp, 41.65Mbp, 44.20Mbp, 45.62Mbp, 52.27Mbp, 55.28Mbp, 59.23Mbp, 62.77Mbp, 68.98Mbp, 77.79Mbp, 79.22Mbp, 80.32Mbp, 84.91Mbp, 88.50Mbp, 93.37Mbp, 95.28Mbp, 103.12Mbp, 108.04Mbp, 126.24Mbp, 127.80Mbp, 140.94Mbp, 145.44Mbp] 2025-01-31 09:53:27,451 DEBUG chr7 time: 209.45178602996748 s 2025-01-31 09:53:27,553 DEBUG Processing 277/677 atomic regions from SNP 83073 to 83673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,591 DEBUG chr7: Fitting background model for 35 segments 2025-01-31 09:53:27,602 DEBUG Processing 59/734 atomic regions from SNP 17458 to 18059 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,610 DEBUG Processing 628/745 atomic regions from SNP 188341 to 188941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,783 DEBUG Processing 278/677 atomic regions from SNP 83373 to 83973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,820 DEBUG Processing 60/734 atomic regions from SNP 17759 to 18360 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,844 DEBUG Processing 629/745 atomic regions from SNP 188641 to 189241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,005 DEBUG Processing 279/677 atomic regions from SNP 83673 to 84273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,054 DEBUG Processing 61/734 atomic regions from SNP 18060 to 18661 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,075 DEBUG Processing 630/745 atomic regions from SNP 188941 to 189541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,228 DEBUG Processing 280/677 atomic regions from SNP 83973 to 84573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,300 DEBUG Processing 62/734 atomic regions from SNP 18361 to 18962 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,315 DEBUG Processing 631/745 atomic regions from SNP 189241 to 189841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,467 DEBUG Processing 281/677 atomic regions from SNP 84273 to 84873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,526 DEBUG Processing 63/734 atomic regions from SNP 18662 to 19263 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,566 DEBUG Processing 632/745 atomic regions from SNP 189541 to 190141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,696 DEBUG Processing 282/677 atomic regions from SNP 84573 to 85173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,757 DEBUG Processing 64/734 atomic regions from SNP 18963 to 19564 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,819 DEBUG Processing 633/745 atomic regions from SNP 189841 to 190441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,906 DEBUG Processing 283/677 atomic regions from SNP 84873 to 85473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,992 DEBUG Processing 65/734 atomic regions from SNP 19264 to 19865 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,066 DEBUG Processing 634/745 atomic regions from SNP 190141 to 190741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,111 DEBUG Processing 284/677 atomic regions from SNP 85173 to 85773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,218 DEBUG Processing 66/734 atomic regions from SNP 19565 to 20166 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,312 DEBUG Processing 635/745 atomic regions from SNP 190441 to 191041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,317 DEBUG Processing 285/677 atomic regions from SNP 85473 to 86073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,445 DEBUG Processing 67/734 atomic regions from SNP 19866 to 20467 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,525 DEBUG Processing 286/677 atomic regions from SNP 85773 to 86373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,560 DEBUG Processing 636/745 atomic regions from SNP 190741 to 191341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,670 DEBUG Processing 68/734 atomic regions from SNP 20167 to 20768 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,732 DEBUG Processing 287/677 atomic regions from SNP 86073 to 86673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,801 DEBUG Subchromosome time: 272.4040585679468, subchromosome SNPs: 260756 2025-01-31 09:53:29,801 DEBUG Estimated BADs: [2.89, 1.45, 5.79, 2.89, 0.96, 2.89, 1.45, 5.79, 0.96, 2.89, 5.79, 2.89, 1.45, 5.79, 2.89, 0.96, 2.89] SNP counts: [10915, 32763, 6054, 23020, 2693, 27902, 15556, 6112, 10130, 5577, 16035, 22788, 15629, 27637, 3071, 5274, 29600] SNP IDs counts: [10915, 32763, 6054, 23020, 2693, 27902, 15556, 6112, 10130, 5577, 16035, 22788, 15629, 27637, 3071, 5274, 29600] Critical gap: 659271bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.31Mbp, 28.29Mbp, 31.51Mbp, 44.23Mbp, 45.76Mbp, 61.36Mbp, 70.71Mbp, 74.01Mbp, 79.86Mbp, 82.99Mbp, 91.65Mbp, 103.97Mbp, 112.84Mbp, 128.22Mbp, 129.96Mbp, 133.39Mbp, 149.74Mbp] 2025-01-31 09:53:29,801 DEBUG chr6 time: 272.40450991201214 s 2025-01-31 09:53:29,808 DEBUG Processing 637/745 atomic regions from SNP 191041 to 191641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,902 DEBUG Processing 69/734 atomic regions from SNP 20468 to 21069 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,940 DEBUG Processing 288/677 atomic regions from SNP 86373 to 86973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,941 DEBUG chr6: Fitting background model for 17 segments 2025-01-31 09:53:30,060 DEBUG Processing 638/745 atomic regions from SNP 191341 to 191941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,140 DEBUG Processing 70/734 atomic regions from SNP 20769 to 21370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,150 DEBUG Processing 289/677 atomic regions from SNP 86673 to 87273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,316 DEBUG Processing 639/745 atomic regions from SNP 191641 to 192241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,366 DEBUG Processing 290/677 atomic regions from SNP 86973 to 87573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,368 DEBUG Processing 71/734 atomic regions from SNP 21070 to 21671 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,570 DEBUG Processing 640/745 atomic regions from SNP 191941 to 192541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,581 DEBUG Processing 291/677 atomic regions from SNP 87273 to 87873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,599 DEBUG Processing 72/734 atomic regions from SNP 21371 to 21972 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,798 DEBUG Processing 292/677 atomic regions from SNP 87573 to 88173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,808 DEBUG Processing 641/745 atomic regions from SNP 192241 to 192841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,828 DEBUG Processing 73/734 atomic regions from SNP 21672 to 22273 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,007 DEBUG Processing 293/677 atomic regions from SNP 87873 to 88473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,035 DEBUG Processing 642/745 atomic regions from SNP 192541 to 193141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,056 DEBUG Processing 74/734 atomic regions from SNP 21973 to 22574 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,221 DEBUG Processing 294/677 atomic regions from SNP 88173 to 88773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,264 DEBUG Processing 643/745 atomic regions from SNP 192841 to 193441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,280 DEBUG Processing 75/734 atomic regions from SNP 22274 to 22875 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,441 DEBUG Processing 295/677 atomic regions from SNP 88473 to 89073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,489 DEBUG Processing 644/745 atomic regions from SNP 193141 to 193741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,504 DEBUG Processing 76/734 atomic regions from SNP 22575 to 23176 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,664 DEBUG Processing 296/677 atomic regions from SNP 88773 to 89373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,715 DEBUG Processing 645/745 atomic regions from SNP 193441 to 194041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,724 DEBUG Processing 77/734 atomic regions from SNP 22876 to 23477 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,879 DEBUG Processing 297/677 atomic regions from SNP 89073 to 89673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,943 DEBUG Processing 78/734 atomic regions from SNP 23177 to 23778 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,945 DEBUG Processing 646/745 atomic regions from SNP 193741 to 194341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,102 DEBUG Processing 298/677 atomic regions from SNP 89373 to 89973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,168 DEBUG Processing 79/734 atomic regions from SNP 23478 to 24079 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,171 DEBUG Processing 647/745 atomic regions from SNP 194041 to 194641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,331 DEBUG Processing 299/677 atomic regions from SNP 89673 to 90273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,392 DEBUG Processing 80/734 atomic regions from SNP 23779 to 24380 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,399 DEBUG Processing 648/745 atomic regions from SNP 194341 to 194941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,548 DEBUG Processing 300/677 atomic regions from SNP 89973 to 90573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,621 DEBUG Processing 81/734 atomic regions from SNP 24080 to 24681 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,623 DEBUG Processing 649/745 atomic regions from SNP 194641 to 195241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,780 DEBUG Processing 301/677 atomic regions from SNP 90273 to 90873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,847 DEBUG Processing 650/745 atomic regions from SNP 194941 to 195541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,852 DEBUG Processing 82/734 atomic regions from SNP 24381 to 24982 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,015 DEBUG Processing 302/677 atomic regions from SNP 90573 to 91173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,071 DEBUG Processing 651/745 atomic regions from SNP 195241 to 195841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,079 DEBUG Processing 83/734 atomic regions from SNP 24682 to 25283 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,251 DEBUG Processing 303/677 atomic regions from SNP 90873 to 91473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,299 DEBUG Processing 652/745 atomic regions from SNP 195541 to 196141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,310 DEBUG Processing 84/734 atomic regions from SNP 24983 to 25584 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,482 DEBUG Processing 304/677 atomic regions from SNP 91173 to 91773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,521 DEBUG Processing 653/745 atomic regions from SNP 195841 to 196441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,540 DEBUG Processing 85/734 atomic regions from SNP 25284 to 25885 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,718 DEBUG Processing 305/677 atomic regions from SNP 91473 to 92073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,744 DEBUG Processing 654/745 atomic regions from SNP 196141 to 196741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,766 DEBUG Processing 86/734 atomic regions from SNP 25585 to 26186 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,930 DEBUG Processing 306/677 atomic regions from SNP 91773 to 92373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,968 DEBUG Processing 655/745 atomic regions from SNP 196441 to 197041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,983 DEBUG Processing 87/734 atomic regions from SNP 25886 to 26487 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,141 DEBUG Processing 307/677 atomic regions from SNP 92073 to 92673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,194 DEBUG Processing 656/745 atomic regions from SNP 196741 to 197341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,202 DEBUG Processing 88/734 atomic regions from SNP 26187 to 26788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,363 DEBUG Processing 308/677 atomic regions from SNP 92373 to 92973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,417 DEBUG Processing 657/745 atomic regions from SNP 197041 to 197641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,426 DEBUG Processing 89/734 atomic regions from SNP 26488 to 27089 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,592 DEBUG Processing 309/677 atomic regions from SNP 92673 to 93273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,644 DEBUG Processing 90/734 atomic regions from SNP 26789 to 27390 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,645 DEBUG Processing 658/745 atomic regions from SNP 197341 to 197941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,819 DEBUG Processing 310/677 atomic regions from SNP 92973 to 93573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,867 DEBUG Processing 91/734 atomic regions from SNP 27090 to 27691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,877 DEBUG Processing 659/745 atomic regions from SNP 197641 to 198241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,044 DEBUG Processing 311/677 atomic regions from SNP 93273 to 93873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,086 DEBUG Processing 92/734 atomic regions from SNP 27391 to 27992 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,104 DEBUG Processing 660/745 atomic regions from SNP 197941 to 198541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,286 DEBUG Processing 312/677 atomic regions from SNP 93573 to 94173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,317 DEBUG Processing 93/734 atomic regions from SNP 27692 to 28293 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,340 DEBUG Processing 661/745 atomic regions from SNP 198241 to 198841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,535 DEBUG Processing 313/677 atomic regions from SNP 93873 to 94473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,551 DEBUG Processing 94/734 atomic regions from SNP 27993 to 28594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,573 DEBUG Processing 662/745 atomic regions from SNP 198541 to 199141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,773 DEBUG Processing 95/734 atomic regions from SNP 28294 to 28895 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,779 DEBUG Processing 314/677 atomic regions from SNP 94173 to 94773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,792 DEBUG Processing 663/745 atomic regions from SNP 198841 to 199441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,987 DEBUG Processing 96/734 atomic regions from SNP 28595 to 29196 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,014 DEBUG Processing 664/745 atomic regions from SNP 199141 to 199741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,014 DEBUG Processing 315/677 atomic regions from SNP 94473 to 95073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,214 DEBUG Processing 97/734 atomic regions from SNP 28896 to 29497 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,248 DEBUG Processing 665/745 atomic regions from SNP 199441 to 200041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,263 DEBUG Processing 316/677 atomic regions from SNP 94773 to 95373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,447 DEBUG Processing 98/734 atomic regions from SNP 29197 to 29798 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,483 DEBUG Processing 666/745 atomic regions from SNP 199741 to 200341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,499 DEBUG Processing 317/677 atomic regions from SNP 95073 to 95673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,682 DEBUG Processing 99/734 atomic regions from SNP 29498 to 30099 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,724 DEBUG Processing 667/745 atomic regions from SNP 200041 to 200641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,748 DEBUG Processing 318/677 atomic regions from SNP 95373 to 95973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,915 DEBUG Processing 100/734 atomic regions from SNP 29799 to 30400 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,965 DEBUG Processing 668/745 atomic regions from SNP 200341 to 200941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,000 DEBUG Processing 319/677 atomic regions from SNP 95673 to 96273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,159 DEBUG Processing 101/734 atomic regions from SNP 30100 to 30701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,222 DEBUG Processing 669/745 atomic regions from SNP 200641 to 201241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,258 DEBUG Processing 320/677 atomic regions from SNP 95973 to 96573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,416 DEBUG Processing 102/734 atomic regions from SNP 30401 to 31002 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,487 DEBUG Processing 670/745 atomic regions from SNP 200941 to 201541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,500 DEBUG Processing 321/677 atomic regions from SNP 96273 to 96873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,676 DEBUG Processing 103/734 atomic regions from SNP 30702 to 31303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,734 DEBUG Processing 322/677 atomic regions from SNP 96573 to 97173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,754 DEBUG Processing 671/745 atomic regions from SNP 201241 to 201841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,939 DEBUG Processing 104/734 atomic regions from SNP 31003 to 31604 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,971 DEBUG Processing 323/677 atomic regions from SNP 96873 to 97473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,022 DEBUG Processing 672/745 atomic regions from SNP 201541 to 202141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,207 DEBUG Processing 105/734 atomic regions from SNP 31304 to 31905 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,218 DEBUG Processing 324/677 atomic regions from SNP 97173 to 97773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,294 DEBUG Processing 673/745 atomic regions from SNP 201841 to 202441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,456 DEBUG Processing 325/677 atomic regions from SNP 97473 to 98073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,475 DEBUG Processing 106/734 atomic regions from SNP 31605 to 32206 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,564 DEBUG Processing 674/745 atomic regions from SNP 202141 to 202741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,699 DEBUG Processing 326/677 atomic regions from SNP 97773 to 98373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,741 DEBUG Processing 107/734 atomic regions from SNP 31906 to 32507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,819 DEBUG Processing 675/745 atomic regions from SNP 202441 to 203041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,948 DEBUG Processing 327/677 atomic regions from SNP 98073 to 98673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,010 DEBUG Processing 108/734 atomic regions from SNP 32207 to 32808 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,070 DEBUG Processing 676/745 atomic regions from SNP 202741 to 203341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,208 DEBUG Processing 328/677 atomic regions from SNP 98373 to 98973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,276 DEBUG Processing 109/734 atomic regions from SNP 32508 to 33109 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,316 DEBUG Processing 677/745 atomic regions from SNP 203041 to 203641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,447 DEBUG Processing 329/677 atomic regions from SNP 98673 to 99273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,539 DEBUG Processing 110/734 atomic regions from SNP 32809 to 33410 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,565 DEBUG Processing 678/745 atomic regions from SNP 203341 to 203941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,691 DEBUG Processing 330/677 atomic regions from SNP 98973 to 99573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,810 DEBUG Processing 111/734 atomic regions from SNP 33110 to 33711 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,815 DEBUG Processing 679/745 atomic regions from SNP 203641 to 204241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,945 DEBUG Processing 331/677 atomic regions from SNP 99273 to 99873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,060 DEBUG Processing 112/734 atomic regions from SNP 33411 to 34012 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,071 DEBUG Processing 680/745 atomic regions from SNP 203941 to 204541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,184 DEBUG Processing 332/677 atomic regions from SNP 99573 to 100173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,308 DEBUG Processing 113/734 atomic regions from SNP 33712 to 34313 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,326 DEBUG Processing 681/745 atomic regions from SNP 204241 to 204841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,411 DEBUG Processing 333/677 atomic regions from SNP 99873 to 100473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,540 DEBUG Processing 114/734 atomic regions from SNP 34013 to 34614 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,574 DEBUG Processing 682/745 atomic regions from SNP 204541 to 205141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,633 DEBUG Processing 334/677 atomic regions from SNP 100173 to 100773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,766 DEBUG Processing 115/734 atomic regions from SNP 34314 to 34915 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,830 DEBUG Processing 683/745 atomic regions from SNP 204841 to 205441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,858 DEBUG Processing 335/677 atomic regions from SNP 100473 to 101073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,990 DEBUG Processing 116/734 atomic regions from SNP 34615 to 35216 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,082 DEBUG Processing 336/677 atomic regions from SNP 100773 to 101373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,087 DEBUG Processing 684/745 atomic regions from SNP 205141 to 205741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,210 DEBUG Processing 117/734 atomic regions from SNP 34916 to 35517 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,312 DEBUG Processing 337/677 atomic regions from SNP 101073 to 101673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,362 DEBUG Processing 685/745 atomic regions from SNP 205441 to 206041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,430 DEBUG Processing 118/734 atomic regions from SNP 35217 to 35818 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,556 DEBUG Processing 338/677 atomic regions from SNP 101373 to 101973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,638 DEBUG Processing 686/745 atomic regions from SNP 205741 to 206341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,649 DEBUG Processing 119/734 atomic regions from SNP 35518 to 36119 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,799 DEBUG Processing 339/677 atomic regions from SNP 101673 to 102273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,876 DEBUG Processing 120/734 atomic regions from SNP 35819 to 36420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,906 DEBUG Processing 687/745 atomic regions from SNP 206041 to 206641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,038 DEBUG Processing 340/677 atomic regions from SNP 101973 to 102573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,107 DEBUG Processing 121/734 atomic regions from SNP 36120 to 36721 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,182 DEBUG Processing 688/745 atomic regions from SNP 206341 to 206941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,269 DEBUG Processing 341/677 atomic regions from SNP 102273 to 102873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,336 DEBUG Processing 122/734 atomic regions from SNP 36421 to 37022 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,453 DEBUG Processing 689/745 atomic regions from SNP 206641 to 207241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,498 DEBUG Processing 342/677 atomic regions from SNP 102573 to 103173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,561 DEBUG Processing 123/734 atomic regions from SNP 36722 to 37323 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,758 DEBUG Processing 690/745 atomic regions from SNP 206941 to 207541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,760 DEBUG Processing 343/677 atomic regions from SNP 102873 to 103473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,851 DEBUG Processing 124/734 atomic regions from SNP 37023 to 37624 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,986 DEBUG Processing 344/677 atomic regions from SNP 103173 to 103773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,035 DEBUG Processing 691/745 atomic regions from SNP 207241 to 207841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,084 DEBUG Processing 125/734 atomic regions from SNP 37324 to 37925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,208 DEBUG Processing 345/677 atomic regions from SNP 103473 to 104073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,313 DEBUG Processing 692/745 atomic regions from SNP 207541 to 208141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,317 DEBUG Processing 126/734 atomic regions from SNP 37625 to 38226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,440 DEBUG Processing 346/677 atomic regions from SNP 103773 to 104373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,555 DEBUG Processing 127/734 atomic regions from SNP 37926 to 38527 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,594 DEBUG Processing 693/745 atomic regions from SNP 207841 to 208441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,671 DEBUG Processing 347/677 atomic regions from SNP 104073 to 104673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,797 DEBUG Processing 128/734 atomic regions from SNP 38227 to 38828 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,875 DEBUG Processing 694/745 atomic regions from SNP 208141 to 208741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,899 DEBUG Processing 348/677 atomic regions from SNP 104373 to 104973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,045 DEBUG Processing 129/734 atomic regions from SNP 38528 to 39129 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,127 DEBUG Processing 349/677 atomic regions from SNP 104673 to 105273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,145 DEBUG Processing 695/745 atomic regions from SNP 208441 to 209041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,289 DEBUG Processing 130/734 atomic regions from SNP 38829 to 39430 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,352 DEBUG Processing 350/677 atomic regions from SNP 104973 to 105573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,410 DEBUG Processing 696/745 atomic regions from SNP 208741 to 209341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,528 DEBUG Processing 131/734 atomic regions from SNP 39130 to 39731 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,578 DEBUG Processing 351/677 atomic regions from SNP 105273 to 105873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,668 DEBUG Processing 697/745 atomic regions from SNP 209041 to 209641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,761 DEBUG Processing 132/734 atomic regions from SNP 39431 to 40032 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,822 DEBUG Processing 352/677 atomic regions from SNP 105573 to 106173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,932 DEBUG Processing 698/745 atomic regions from SNP 209341 to 209941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,993 DEBUG Processing 133/734 atomic regions from SNP 39732 to 40333 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,073 DEBUG Processing 353/677 atomic regions from SNP 105873 to 106473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,222 DEBUG Processing 699/745 atomic regions from SNP 209641 to 210241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,249 DEBUG Processing 134/734 atomic regions from SNP 40033 to 40634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,334 DEBUG Processing 354/677 atomic regions from SNP 106173 to 106773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,482 DEBUG Processing 135/734 atomic regions from SNP 40334 to 40935 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,495 DEBUG Processing 700/745 atomic regions from SNP 209941 to 210541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,584 DEBUG Processing 355/677 atomic regions from SNP 106473 to 107073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,735 DEBUG Processing 136/734 atomic regions from SNP 40635 to 41236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,770 DEBUG Processing 701/745 atomic regions from SNP 210241 to 210841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,827 DEBUG Processing 356/677 atomic regions from SNP 106773 to 107373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,971 DEBUG Processing 137/734 atomic regions from SNP 40936 to 41537 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,047 DEBUG Processing 702/745 atomic regions from SNP 210541 to 211141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,082 DEBUG Processing 357/677 atomic regions from SNP 107073 to 107673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,196 DEBUG Processing 138/734 atomic regions from SNP 41237 to 41838 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,324 DEBUG Processing 703/745 atomic regions from SNP 210841 to 211441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,339 DEBUG Processing 358/677 atomic regions from SNP 107373 to 107973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,423 DEBUG Processing 139/734 atomic regions from SNP 41538 to 42139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,590 DEBUG Processing 359/677 atomic regions from SNP 107673 to 108273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,602 DEBUG Processing 704/745 atomic regions from SNP 211141 to 211741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,659 DEBUG Processing 140/734 atomic regions from SNP 41839 to 42440 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,834 DEBUG Processing 360/677 atomic regions from SNP 107973 to 108573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,881 DEBUG Processing 705/745 atomic regions from SNP 211441 to 212041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,893 DEBUG Processing 141/734 atomic regions from SNP 42140 to 42741 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,068 DEBUG Processing 361/677 atomic regions from SNP 108273 to 108873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,122 DEBUG Processing 142/734 atomic regions from SNP 42441 to 43042 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,150 DEBUG Processing 706/745 atomic regions from SNP 211741 to 212341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,304 DEBUG Processing 362/677 atomic regions from SNP 108573 to 109173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,358 DEBUG Processing 143/734 atomic regions from SNP 42742 to 43343 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,425 DEBUG Processing 707/745 atomic regions from SNP 212041 to 212641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,534 DEBUG Processing 363/677 atomic regions from SNP 108873 to 109473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,591 DEBUG Processing 144/734 atomic regions from SNP 43043 to 43644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,703 DEBUG Processing 708/745 atomic regions from SNP 212341 to 212941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,765 DEBUG Processing 364/677 atomic regions from SNP 109173 to 109773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,823 DEBUG Processing 145/734 atomic regions from SNP 43344 to 43945 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,976 DEBUG Processing 709/745 atomic regions from SNP 212641 to 213241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,993 DEBUG Processing 365/677 atomic regions from SNP 109473 to 110073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,047 DEBUG Processing 146/734 atomic regions from SNP 43645 to 44246 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,228 DEBUG Processing 366/677 atomic regions from SNP 109773 to 110373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,255 DEBUG Processing 710/745 atomic regions from SNP 212941 to 213541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:48,282 DEBUG Processing 147/734 atomic regions from SNP 43946 to 44547 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,461 DEBUG Processing 367/677 atomic regions from SNP 110073 to 110673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,512 DEBUG Processing 148/734 atomic regions from SNP 44247 to 44848 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,531 DEBUG Processing 711/745 atomic regions from SNP 213241 to 213841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:48,694 DEBUG Processing 368/677 atomic regions from SNP 110373 to 110973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,745 DEBUG Processing 149/734 atomic regions from SNP 44548 to 45149 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,805 DEBUG Processing 712/745 atomic regions from SNP 213541 to 214141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:48,926 DEBUG Processing 369/677 atomic regions from SNP 110673 to 111273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,981 DEBUG Processing 150/734 atomic regions from SNP 44849 to 45450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,087 DEBUG Processing 713/745 atomic regions from SNP 213841 to 214441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:49,151 DEBUG Processing 370/677 atomic regions from SNP 110973 to 111573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,216 DEBUG Processing 151/734 atomic regions from SNP 45150 to 45750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,365 DEBUG Processing 714/745 atomic regions from SNP 214141 to 214741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:49,378 DEBUG Processing 371/677 atomic regions from SNP 111273 to 111873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,446 DEBUG Processing 152/734 atomic regions from SNP 45450 to 46050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,597 DEBUG Processing 372/677 atomic regions from SNP 111573 to 112173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,634 DEBUG Processing 715/745 atomic regions from SNP 214441 to 215041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:49,681 DEBUG Processing 153/734 atomic regions from SNP 45750 to 46350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,822 DEBUG Processing 373/677 atomic regions from SNP 111873 to 112473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,910 DEBUG Processing 716/745 atomic regions from SNP 214741 to 215341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:49,918 DEBUG Processing 154/734 atomic regions from SNP 46050 to 46650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,044 DEBUG Processing 374/677 atomic regions from SNP 112173 to 112773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,149 DEBUG Processing 155/734 atomic regions from SNP 46350 to 46950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,182 DEBUG Processing 717/745 atomic regions from SNP 215041 to 215641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:50,284 DEBUG Processing 375/677 atomic regions from SNP 112473 to 113073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,396 DEBUG Processing 156/734 atomic regions from SNP 46650 to 47250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,453 DEBUG Processing 718/745 atomic regions from SNP 215341 to 215941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:50,522 DEBUG Processing 376/677 atomic regions from SNP 112773 to 113373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,627 DEBUG Processing 157/734 atomic regions from SNP 46950 to 47550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,718 DEBUG Processing 719/745 atomic regions from SNP 215641 to 216241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:50,736 DEBUG Processing 377/677 atomic regions from SNP 113073 to 113673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,841 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:53:50,855 DEBUG Processing 158/734 atomic regions from SNP 47250 to 47850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,950 DEBUG Processing 378/677 atomic regions from SNP 113373 to 113973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,991 DEBUG Processing 720/745 atomic regions from SNP 215941 to 216541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:51,077 DEBUG Processing 159/734 atomic regions from SNP 47550 to 48150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,169 DEBUG Processing 379/677 atomic regions from SNP 113673 to 114273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,266 DEBUG Processing 721/745 atomic regions from SNP 216241 to 216841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:51,304 DEBUG Processing 160/734 atomic regions from SNP 47850 to 48450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,386 DEBUG Processing 380/677 atomic regions from SNP 113973 to 114573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,532 DEBUG Processing 161/734 atomic regions from SNP 48150 to 48750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,534 DEBUG Processing 722/745 atomic regions from SNP 216541 to 217141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:51,611 DEBUG Processing 381/677 atomic regions from SNP 114273 to 114873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,756 DEBUG Processing 162/734 atomic regions from SNP 48450 to 49050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,803 DEBUG Processing 723/745 atomic regions from SNP 216841 to 217441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:51,838 DEBUG Processing 382/677 atomic regions from SNP 114573 to 115173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,986 DEBUG Processing 163/734 atomic regions from SNP 48750 to 49350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,081 DEBUG Processing 383/677 atomic regions from SNP 114873 to 115473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,083 DEBUG Processing 724/745 atomic regions from SNP 217141 to 217741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:52,218 DEBUG Processing 164/734 atomic regions from SNP 49050 to 49650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,325 DEBUG Processing 384/677 atomic regions from SNP 115173 to 115773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,351 DEBUG Processing 725/745 atomic regions from SNP 217441 to 218041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:52,452 DEBUG Processing 165/734 atomic regions from SNP 49350 to 49950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,575 DEBUG Processing 385/677 atomic regions from SNP 115473 to 116073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,616 DEBUG Processing 726/745 atomic regions from SNP 217741 to 218341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:52,699 DEBUG Processing 166/734 atomic regions from SNP 49650 to 50250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,817 DEBUG Processing 386/677 atomic regions from SNP 115773 to 116373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,878 DEBUG Processing 727/745 atomic regions from SNP 218041 to 218641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:52,953 DEBUG Processing 167/734 atomic regions from SNP 49950 to 50550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,044 DEBUG Processing 387/677 atomic regions from SNP 116073 to 116673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,141 DEBUG Processing 728/745 atomic regions from SNP 218341 to 218941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:53,184 DEBUG Processing 168/734 atomic regions from SNP 50250 to 50850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,279 DEBUG Processing 388/677 atomic regions from SNP 116373 to 116973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,408 DEBUG Processing 729/745 atomic regions from SNP 218641 to 219241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:53,412 DEBUG Processing 169/734 atomic regions from SNP 50550 to 51150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,523 DEBUG Processing 389/677 atomic regions from SNP 116673 to 117273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,643 DEBUG Processing 170/734 atomic regions from SNP 50850 to 51450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,681 DEBUG Processing 730/745 atomic regions from SNP 218941 to 219541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:53,762 DEBUG Processing 390/677 atomic regions from SNP 116973 to 117573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,873 DEBUG Processing 171/734 atomic regions from SNP 51150 to 51750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,950 DEBUG Processing 731/745 atomic regions from SNP 219241 to 219841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:53,993 DEBUG Processing 391/677 atomic regions from SNP 117273 to 117873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,109 DEBUG Processing 172/734 atomic regions from SNP 51450 to 52050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,213 DEBUG Processing 732/745 atomic regions from SNP 219541 to 220141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,233 DEBUG Processing 392/677 atomic regions from SNP 117573 to 118173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,357 DEBUG Processing 173/734 atomic regions from SNP 51750 to 52350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,472 DEBUG Processing 393/677 atomic regions from SNP 117873 to 118473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,472 DEBUG Processing 733/745 atomic regions from SNP 219841 to 220441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,607 DEBUG Processing 174/734 atomic regions from SNP 52050 to 52650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,716 DEBUG Processing 734/745 atomic regions from SNP 220141 to 220741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,723 DEBUG Processing 394/677 atomic regions from SNP 118173 to 118773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,844 DEBUG Processing 175/734 atomic regions from SNP 52350 to 52950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,923 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:53:54,954 DEBUG Processing 735/745 atomic regions from SNP 220441 to 221041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,957 DEBUG Processing 395/677 atomic regions from SNP 118473 to 119073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,081 DEBUG Processing 176/734 atomic regions from SNP 52650 to 53250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,188 DEBUG Processing 396/677 atomic regions from SNP 118773 to 119373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,195 DEBUG Processing 736/745 atomic regions from SNP 220741 to 221341 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:55,323 DEBUG Processing 177/734 atomic regions from SNP 52950 to 53550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,422 DEBUG Processing 397/677 atomic regions from SNP 119073 to 119673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,436 DEBUG Processing 737/745 atomic regions from SNP 221041 to 221641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:55,564 DEBUG Processing 178/734 atomic regions from SNP 53250 to 53850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,647 DEBUG Processing 398/677 atomic regions from SNP 119373 to 119973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,672 DEBUG Processing 738/745 atomic regions from SNP 221341 to 221941 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:55,807 DEBUG Processing 179/734 atomic regions from SNP 53550 to 54150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,877 DEBUG Processing 399/677 atomic regions from SNP 119673 to 120273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,912 DEBUG Processing 739/745 atomic regions from SNP 221641 to 222241 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:56,051 DEBUG Processing 180/734 atomic regions from SNP 53850 to 54450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,113 DEBUG Processing 400/677 atomic regions from SNP 119973 to 120573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,157 DEBUG Processing 740/745 atomic regions from SNP 221941 to 222541 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:56,294 DEBUG Processing 181/734 atomic regions from SNP 54150 to 54750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,342 DEBUG Processing 401/677 atomic regions from SNP 120273 to 120873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,393 DEBUG Processing 741/745 atomic regions from SNP 222241 to 222841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:56,538 DEBUG Processing 182/734 atomic regions from SNP 54450 to 55050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,577 DEBUG Processing 402/677 atomic regions from SNP 120573 to 121173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,630 DEBUG Processing 742/745 atomic regions from SNP 222541 to 223141 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:56,781 DEBUG Processing 183/734 atomic regions from SNP 54750 to 55350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,811 DEBUG Processing 403/677 atomic regions from SNP 120873 to 121473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,874 DEBUG Processing 743/745 atomic regions from SNP 222841 to 223441 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:57,020 DEBUG Processing 184/734 atomic regions from SNP 55050 to 55650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,044 DEBUG Processing 404/677 atomic regions from SNP 121173 to 121773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,120 DEBUG Processing 744/745 atomic regions from SNP 223141 to 223741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:57,258 DEBUG Processing 185/734 atomic regions from SNP 55350 to 55950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,281 DEBUG Processing 405/677 atomic regions from SNP 121473 to 122073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,346 DEBUG Processing 745/745 atomic regions from SNP 223441 to 224041 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:57,478 DEBUG Unique SNPs positions in subchromosome 1: 224042 2025-01-31 09:53:57,493 DEBUG Processing 186/734 atomic regions from SNP 55650 to 56250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,512 DEBUG Processing 406/677 atomic regions from SNP 121773 to 122373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,730 DEBUG Processing 187/734 atomic regions from SNP 55950 to 56550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,750 DEBUG Processing 407/677 atomic regions from SNP 122073 to 122673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,967 DEBUG Processing 188/734 atomic regions from SNP 56250 to 56850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,993 DEBUG Processing 408/677 atomic regions from SNP 122373 to 122973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,206 DEBUG Processing 189/734 atomic regions from SNP 56550 to 57150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,233 DEBUG Processing 409/677 atomic regions from SNP 122673 to 123273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,465 DEBUG Processing 190/734 atomic regions from SNP 56850 to 57450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,474 DEBUG Processing 410/677 atomic regions from SNP 122973 to 123573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,719 DEBUG Processing 191/734 atomic regions from SNP 57150 to 57750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,728 DEBUG Processing 411/677 atomic regions from SNP 123273 to 123873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,966 DEBUG Processing 192/734 atomic regions from SNP 57450 to 58050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,985 DEBUG Processing 412/677 atomic regions from SNP 123573 to 124173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,217 DEBUG Processing 193/734 atomic regions from SNP 57750 to 58350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,238 DEBUG Processing 413/677 atomic regions from SNP 123873 to 124473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,454 DEBUG Processing 194/734 atomic regions from SNP 58050 to 58650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,477 DEBUG Processing 414/677 atomic regions from SNP 124173 to 124773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,691 DEBUG Processing 195/734 atomic regions from SNP 58350 to 58950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,712 DEBUG Processing 415/677 atomic regions from SNP 124473 to 125073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,931 DEBUG Processing 196/734 atomic regions from SNP 58650 to 59250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,946 DEBUG Processing 416/677 atomic regions from SNP 124773 to 125373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,206 DEBUG Processing 197/734 atomic regions from SNP 58950 to 59550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,250 DEBUG Processing 417/677 atomic regions from SNP 125073 to 125673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,505 DEBUG Processing 198/734 atomic regions from SNP 59250 to 59850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,525 DEBUG Processing 418/677 atomic regions from SNP 125373 to 125973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,751 DEBUG Processing 199/734 atomic regions from SNP 59550 to 60150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,763 DEBUG Processing 419/677 atomic regions from SNP 125673 to 126273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,997 DEBUG Processing 200/734 atomic regions from SNP 59850 to 60450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,001 DEBUG Processing 420/677 atomic regions from SNP 125973 to 126573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,249 DEBUG Processing 421/677 atomic regions from SNP 126273 to 126873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,253 DEBUG Processing 201/734 atomic regions from SNP 60150 to 60750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,511 DEBUG Processing 422/677 atomic regions from SNP 126573 to 127173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,527 DEBUG Processing 202/734 atomic regions from SNP 60450 to 61050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,762 DEBUG Processing 423/677 atomic regions from SNP 126873 to 127473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,790 DEBUG Processing 203/734 atomic regions from SNP 60750 to 61350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,016 DEBUG Processing 424/677 atomic regions from SNP 127173 to 127773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,065 DEBUG Processing 204/734 atomic regions from SNP 61050 to 61650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,263 DEBUG Processing 425/677 atomic regions from SNP 127473 to 128073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,337 DEBUG Processing 205/734 atomic regions from SNP 61350 to 61950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,499 DEBUG Processing 426/677 atomic regions from SNP 127773 to 128373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,577 DEBUG Processing 206/734 atomic regions from SNP 61650 to 62250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,722 DEBUG Processing 427/677 atomic regions from SNP 128073 to 128673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,822 DEBUG Processing 207/734 atomic regions from SNP 61950 to 62550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,945 DEBUG Processing 428/677 atomic regions from SNP 128373 to 128973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,059 DEBUG Processing 208/734 atomic regions from SNP 62250 to 62850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,169 DEBUG Processing 429/677 atomic regions from SNP 128673 to 129273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,299 DEBUG Processing 209/734 atomic regions from SNP 62550 to 63150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,394 DEBUG Processing 430/677 atomic regions from SNP 128973 to 129573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,527 DEBUG Processing 210/734 atomic regions from SNP 62850 to 63450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,626 DEBUG Processing 431/677 atomic regions from SNP 129273 to 129873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,762 DEBUG Processing 211/734 atomic regions from SNP 63150 to 63750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,866 DEBUG Processing 432/677 atomic regions from SNP 129573 to 130173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,998 DEBUG Processing 212/734 atomic regions from SNP 63450 to 64050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,107 DEBUG Processing 433/677 atomic regions from SNP 129873 to 130473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,232 DEBUG Processing 213/734 atomic regions from SNP 63750 to 64350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,341 DEBUG Processing 434/677 atomic regions from SNP 130173 to 130773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,466 DEBUG Processing 214/734 atomic regions from SNP 64050 to 64650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,579 DEBUG Processing 435/677 atomic regions from SNP 130473 to 131073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,725 DEBUG Processing 215/734 atomic regions from SNP 64350 to 64950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,820 DEBUG Processing 436/677 atomic regions from SNP 130773 to 131373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,964 DEBUG Processing 216/734 atomic regions from SNP 64650 to 65250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,061 DEBUG Processing 437/677 atomic regions from SNP 131073 to 131673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,202 DEBUG Processing 217/734 atomic regions from SNP 64950 to 65550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,306 DEBUG Processing 438/677 atomic regions from SNP 131373 to 131973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,439 DEBUG Processing 218/734 atomic regions from SNP 65250 to 65850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,541 DEBUG Processing 439/677 atomic regions from SNP 131673 to 132273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,678 DEBUG Processing 219/734 atomic regions from SNP 65550 to 66150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,973 DEBUG Processing 440/677 atomic regions from SNP 131973 to 132573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,035 DEBUG Processing 220/734 atomic regions from SNP 65850 to 66450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,291 DEBUG Processing 441/677 atomic regions from SNP 132273 to 132873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,321 DEBUG Processing 221/734 atomic regions from SNP 66150 to 66750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,523 DEBUG Processing 442/677 atomic regions from SNP 132573 to 133173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,562 DEBUG Processing 222/734 atomic regions from SNP 66450 to 67050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,754 DEBUG Processing 443/677 atomic regions from SNP 132873 to 133473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,812 DEBUG Processing 223/734 atomic regions from SNP 66750 to 67350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,986 DEBUG Processing 444/677 atomic regions from SNP 133173 to 133773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,071 DEBUG Processing 224/734 atomic regions from SNP 67050 to 67650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,220 DEBUG Processing 445/677 atomic regions from SNP 133473 to 134073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,319 DEBUG Processing 225/734 atomic regions from SNP 67350 to 67950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,468 DEBUG Processing 446/677 atomic regions from SNP 133773 to 134373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,599 DEBUG Processing 226/734 atomic regions from SNP 67650 to 68250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,709 DEBUG Processing 447/677 atomic regions from SNP 134073 to 134673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,844 DEBUG Processing 227/734 atomic regions from SNP 67950 to 68550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,952 DEBUG Processing 448/677 atomic regions from SNP 134373 to 134973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,095 DEBUG Processing 228/734 atomic regions from SNP 68250 to 68850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,188 DEBUG Processing 449/677 atomic regions from SNP 134673 to 135273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,340 DEBUG Processing 229/734 atomic regions from SNP 68550 to 69150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,415 DEBUG Processing 450/677 atomic regions from SNP 134973 to 135573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,579 DEBUG Processing 230/734 atomic regions from SNP 68850 to 69450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,646 DEBUG Processing 451/677 atomic regions from SNP 135273 to 135873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,826 DEBUG Processing 231/734 atomic regions from SNP 69150 to 69750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,826 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:54:08,828 DEBUG chr11: Signal quantile: 0.994. signal threshold: 33. Best RMSEA: 0.026 2025-01-31 09:54:08,880 DEBUG Processing 452/677 atomic regions from SNP 135573 to 136173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,073 DEBUG Processing 232/734 atomic regions from SNP 69450 to 70050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,122 DEBUG Processing 453/677 atomic regions from SNP 135873 to 136473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,326 DEBUG Processing 233/734 atomic regions from SNP 69750 to 70350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,374 DEBUG Processing 454/677 atomic regions from SNP 136173 to 136773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,582 DEBUG Processing 234/734 atomic regions from SNP 70050 to 70650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,617 DEBUG Processing 455/677 atomic regions from SNP 136473 to 137073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,834 DEBUG Processing 235/734 atomic regions from SNP 70350 to 70950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,860 DEBUG Processing 456/677 atomic regions from SNP 136773 to 137373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,083 DEBUG Processing 236/734 atomic regions from SNP 70650 to 71250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,099 DEBUG Processing 457/677 atomic regions from SNP 137073 to 137673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,199 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:54:10,201 DEBUG chr13: Signal quantile: 0.995. signal threshold: 26. Best RMSEA: 0.036 2025-01-31 09:54:10,347 DEBUG Processing 237/734 atomic regions from SNP 70950 to 71550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,348 DEBUG Processing 458/677 atomic regions from SNP 137373 to 137973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,587 DEBUG Processing 459/677 atomic regions from SNP 137673 to 138273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,601 DEBUG Processing 238/734 atomic regions from SNP 71250 to 71850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,828 DEBUG Processing 460/677 atomic regions from SNP 137973 to 138573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,872 DEBUG Processing 239/734 atomic regions from SNP 71550 to 72150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,938 DEBUG chr11 total SNP count: 219579 2025-01-31 09:54:10,938 DEBUG chr11 length: 122082543 2025-01-31 09:54:10,938 DEBUG ----------------------------------------- 2025-01-31 09:54:10,938 INFO Processing SNPs in chr11 2025-01-31 09:54:11,066 DEBUG Processing 461/677 atomic regions from SNP 138273 to 138873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,147 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 219579)] 2025-01-31 09:54:11,149 DEBUG Processing 240/734 atomic regions from SNP 71850 to 72450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,291 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:11,300 DEBUG Processing 462/677 atomic regions from SNP 138573 to 139173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,411 DEBUG Processing 241/734 atomic regions from SNP 72150 to 72750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,537 DEBUG Processing 463/677 atomic regions from SNP 138873 to 139473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,623 DEBUG Subchromosome time: 221.5536847889889, subchromosome SNPs: 224042 2025-01-31 09:54:11,624 DEBUG Estimated BADs: [3.49, 0.87, 1.75, 3.49, 1.75, 3.49, 1.16, 3.49, 0.87, 1.75, 3.49, 1.75, 3.49, 10.47, 3.49, 6.98, 3.49, 6.98, 0.87, 3.49, 6.98, 13.96, 6.98] SNP counts: [2794, 2998, 5430, 33421, 5419, 8429, 11107, 10228, 7203, 12714, 1999, 6886, 6912, 4203, 19665, 2576, 17663, 3881, 10500, 26627, 4884, 9302, 9201] SNP IDs counts: [2794, 2998, 5430, 33421, 5419, 8429, 11107, 10228, 7203, 12714, 1999, 6886, 6912, 4203, 19665, 2576, 17663, 3881, 10500, 26627, 4884, 9302, 9201] Critical gap: 612575bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.71Mbp, 6.51Mbp, 9.54Mbp, 29.50Mbp, 32.56Mbp, 37.14Mbp, 43.60Mbp, 49.17Mbp, 53.28Mbp, 60.94Mbp, 62.00Mbp, 66.01Mbp, 70.00Mbp, 72.41Mbp, 83.57Mbp, 84.90Mbp, 94.33Mbp, 96.42Mbp, 102.37Mbp, 116.86Mbp, 119.42Mbp, 124.36Mbp, 129.40Mbp] 2025-01-31 09:54:11,624 DEBUG chr8 time: 221.55420501693152 s 2025-01-31 09:54:11,683 DEBUG Processing 242/734 atomic regions from SNP 72450 to 73050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,746 DEBUG chr8: Fitting background model for 23 segments 2025-01-31 09:54:11,774 DEBUG Processing 464/677 atomic regions from SNP 139173 to 139773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,951 DEBUG Processing 243/734 atomic regions from SNP 72750 to 73350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,013 DEBUG Processing 465/677 atomic regions from SNP 139473 to 140073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,212 DEBUG Processing 244/734 atomic regions from SNP 73050 to 73650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,258 DEBUG Processing 466/677 atomic regions from SNP 139773 to 140373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,487 DEBUG Processing 245/734 atomic regions from SNP 73350 to 73950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,504 DEBUG Processing 467/677 atomic regions from SNP 140073 to 140673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,620 DEBUG chr13 total SNP count: 206241 2025-01-31 09:54:12,621 DEBUG chr13 length: 120421639 2025-01-31 09:54:12,621 DEBUG ----------------------------------------- 2025-01-31 09:54:12,621 INFO Processing SNPs in chr13 2025-01-31 09:54:12,749 DEBUG Processing 468/677 atomic regions from SNP 140373 to 140973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,769 DEBUG Processing 246/734 atomic regions from SNP 73650 to 74250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,825 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 206241)] 2025-01-31 09:54:12,964 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:12,985 DEBUG Processing 469/677 atomic regions from SNP 140673 to 141273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,047 DEBUG Processing 247/734 atomic regions from SNP 73950 to 74550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,226 DEBUG Processing 470/677 atomic regions from SNP 140973 to 141573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,321 DEBUG Processing 248/734 atomic regions from SNP 74250 to 74850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,458 DEBUG Processing 471/677 atomic regions from SNP 141273 to 141873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,573 DEBUG Processing 249/734 atomic regions from SNP 74550 to 75150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,680 DEBUG Processing 472/677 atomic regions from SNP 141573 to 142173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,827 DEBUG Processing 250/734 atomic regions from SNP 74850 to 75450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,904 DEBUG Processing 473/677 atomic regions from SNP 141873 to 142473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,072 DEBUG Processing 251/734 atomic regions from SNP 75150 to 75750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,128 DEBUG Processing 474/677 atomic regions from SNP 142173 to 142773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,325 DEBUG Processing 252/734 atomic regions from SNP 75450 to 76050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,359 DEBUG Processing 475/677 atomic regions from SNP 142473 to 143073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,574 DEBUG Processing 253/734 atomic regions from SNP 75750 to 76350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,592 DEBUG Processing 476/677 atomic regions from SNP 142773 to 143373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,818 DEBUG Processing 254/734 atomic regions from SNP 76050 to 76650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,827 DEBUG Processing 477/677 atomic regions from SNP 143073 to 143673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,058 DEBUG Processing 478/677 atomic regions from SNP 143373 to 143973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,068 DEBUG Processing 255/734 atomic regions from SNP 76350 to 76950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,291 DEBUG Processing 479/677 atomic regions from SNP 143673 to 144273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,329 DEBUG Processing 256/734 atomic regions from SNP 76650 to 77250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,521 DEBUG Processing 480/677 atomic regions from SNP 143973 to 144573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,590 DEBUG Processing 257/734 atomic regions from SNP 76950 to 77550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,753 DEBUG Processing 481/677 atomic regions from SNP 144273 to 144873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,841 DEBUG Processing 258/734 atomic regions from SNP 77250 to 77850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,979 DEBUG Processing 482/677 atomic regions from SNP 144573 to 145173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,092 DEBUG Processing 259/734 atomic regions from SNP 77550 to 78150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,201 DEBUG Processing 483/677 atomic regions from SNP 144873 to 145473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,328 DEBUG Processing 260/734 atomic regions from SNP 77850 to 78450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,428 DEBUG Processing 484/677 atomic regions from SNP 145173 to 145773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,556 DEBUG Processing 261/734 atomic regions from SNP 78150 to 78750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,658 DEBUG Processing 485/677 atomic regions from SNP 145473 to 146073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,780 DEBUG Processing 262/734 atomic regions from SNP 78450 to 79050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,886 DEBUG Processing 486/677 atomic regions from SNP 145773 to 146373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,006 DEBUG Processing 263/734 atomic regions from SNP 78750 to 79350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,113 DEBUG Processing 487/677 atomic regions from SNP 146073 to 146673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,238 DEBUG Processing 264/734 atomic regions from SNP 79050 to 79650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,337 DEBUG Processing 488/677 atomic regions from SNP 146373 to 146973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,459 DEBUG Processing 265/734 atomic regions from SNP 79350 to 79950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,562 DEBUG Processing 489/677 atomic regions from SNP 146673 to 147273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,682 DEBUG Processing 266/734 atomic regions from SNP 79650 to 80250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,789 DEBUG Processing 490/677 atomic regions from SNP 146973 to 147573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,906 DEBUG Processing 267/734 atomic regions from SNP 79950 to 80550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,012 DEBUG Processing 491/677 atomic regions from SNP 147273 to 147873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,132 DEBUG Processing 268/734 atomic regions from SNP 80250 to 80850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,235 DEBUG Processing 492/677 atomic regions from SNP 147573 to 148173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,358 DEBUG Processing 269/734 atomic regions from SNP 80550 to 81150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,456 DEBUG Processing 493/677 atomic regions from SNP 147873 to 148473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,585 DEBUG Processing 270/734 atomic regions from SNP 80850 to 81450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,678 DEBUG Processing 494/677 atomic regions from SNP 148173 to 148773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,813 DEBUG Processing 271/734 atomic regions from SNP 81150 to 81750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,893 DEBUG Processing 495/677 atomic regions from SNP 148473 to 149073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,047 DEBUG Processing 272/734 atomic regions from SNP 81450 to 82050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,104 DEBUG Processing 496/677 atomic regions from SNP 148773 to 149373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,289 DEBUG Processing 273/734 atomic regions from SNP 81750 to 82350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,320 DEBUG Processing 497/677 atomic regions from SNP 149073 to 149673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,526 DEBUG Processing 274/734 atomic regions from SNP 82050 to 82650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,538 DEBUG Processing 498/677 atomic regions from SNP 149373 to 149973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,766 DEBUG Processing 499/677 atomic regions from SNP 149673 to 150273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,768 DEBUG Processing 275/734 atomic regions from SNP 82350 to 82950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,991 DEBUG Processing 500/677 atomic regions from SNP 149973 to 150573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,016 DEBUG Processing 276/734 atomic regions from SNP 82650 to 83250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,217 DEBUG Processing 501/677 atomic regions from SNP 150273 to 150873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,257 DEBUG Processing 277/734 atomic regions from SNP 82950 to 83550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,440 DEBUG Processing 502/677 atomic regions from SNP 150573 to 151173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,480 DEBUG Processing 278/734 atomic regions from SNP 83250 to 83850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,659 DEBUG Processing 503/677 atomic regions from SNP 150873 to 151473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,708 DEBUG Processing 279/734 atomic regions from SNP 83550 to 84150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,883 DEBUG Processing 504/677 atomic regions from SNP 151173 to 151773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,931 DEBUG Processing 280/734 atomic regions from SNP 83850 to 84450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,106 DEBUG Processing 505/677 atomic regions from SNP 151473 to 152073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,158 DEBUG Processing 281/734 atomic regions from SNP 84150 to 84750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,329 DEBUG Processing 506/677 atomic regions from SNP 151773 to 152373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,384 DEBUG Processing 282/734 atomic regions from SNP 84450 to 85050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,553 DEBUG Processing 507/677 atomic regions from SNP 152073 to 152673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,613 DEBUG Processing 283/734 atomic regions from SNP 84750 to 85350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,770 DEBUG Processing 508/677 atomic regions from SNP 152373 to 152973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,837 DEBUG Processing 284/734 atomic regions from SNP 85050 to 85650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,985 DEBUG Processing 509/677 atomic regions from SNP 152673 to 153273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,059 DEBUG Processing 285/734 atomic regions from SNP 85350 to 85950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,206 DEBUG Processing 510/677 atomic regions from SNP 152973 to 153573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,296 DEBUG Processing 286/734 atomic regions from SNP 85650 to 86250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,427 DEBUG Processing 511/677 atomic regions from SNP 153273 to 153873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,532 DEBUG Processing 287/734 atomic regions from SNP 85950 to 86550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,640 DEBUG Processing 512/677 atomic regions from SNP 153573 to 154173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,775 DEBUG Processing 288/734 atomic regions from SNP 86250 to 86850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,853 DEBUG Processing 513/677 atomic regions from SNP 153873 to 154473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,005 DEBUG Processing 289/734 atomic regions from SNP 86550 to 87150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,066 DEBUG Processing 514/677 atomic regions from SNP 154173 to 154773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,234 DEBUG Processing 290/734 atomic regions from SNP 86850 to 87450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,286 DEBUG Processing 515/677 atomic regions from SNP 154473 to 155073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,458 DEBUG Processing 291/734 atomic regions from SNP 87150 to 87750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,503 DEBUG Processing 516/677 atomic regions from SNP 154773 to 155373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,680 DEBUG Processing 292/734 atomic regions from SNP 87450 to 88050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,714 DEBUG Processing 517/677 atomic regions from SNP 155073 to 155673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,912 DEBUG Processing 293/734 atomic regions from SNP 87750 to 88350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,939 DEBUG Processing 518/677 atomic regions from SNP 155373 to 155973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,140 DEBUG Processing 294/734 atomic regions from SNP 88050 to 88650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,159 DEBUG Processing 519/677 atomic regions from SNP 155673 to 156273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,370 DEBUG Processing 295/734 atomic regions from SNP 88350 to 88950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,382 DEBUG Processing 520/677 atomic regions from SNP 155973 to 156573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,598 DEBUG Processing 296/734 atomic regions from SNP 88650 to 89250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,606 DEBUG Processing 521/677 atomic regions from SNP 156273 to 156873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,816 DEBUG Processing 297/734 atomic regions from SNP 88950 to 89550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,819 DEBUG Processing 522/677 atomic regions from SNP 156573 to 157173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,036 DEBUG Processing 523/677 atomic regions from SNP 156873 to 157473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,041 DEBUG Processing 298/734 atomic regions from SNP 89250 to 89850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,252 DEBUG Processing 524/677 atomic regions from SNP 157173 to 157773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,260 DEBUG Processing 299/734 atomic regions from SNP 89550 to 90150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,469 DEBUG Processing 525/677 atomic regions from SNP 157473 to 158073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,481 DEBUG Processing 300/734 atomic regions from SNP 89850 to 90450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,687 DEBUG Processing 526/677 atomic regions from SNP 157773 to 158373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,708 DEBUG Processing 301/734 atomic regions from SNP 90150 to 90750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,926 DEBUG Processing 527/677 atomic regions from SNP 158073 to 158673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,929 DEBUG Processing 302/734 atomic regions from SNP 90450 to 91050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,144 DEBUG Processing 528/677 atomic regions from SNP 158373 to 158973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,152 DEBUG Processing 303/734 atomic regions from SNP 90750 to 91350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,370 DEBUG Processing 529/677 atomic regions from SNP 158673 to 159273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,396 DEBUG Processing 304/734 atomic regions from SNP 91050 to 91650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,594 DEBUG Processing 530/677 atomic regions from SNP 158973 to 159573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,636 DEBUG Processing 305/734 atomic regions from SNP 91350 to 91950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,811 DEBUG Processing 531/677 atomic regions from SNP 159273 to 159873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,862 DEBUG Processing 306/734 atomic regions from SNP 91650 to 92250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,022 DEBUG Processing 532/677 atomic regions from SNP 159573 to 160173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,087 DEBUG Processing 307/734 atomic regions from SNP 91950 to 92550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,236 DEBUG Processing 533/677 atomic regions from SNP 159873 to 160473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,306 DEBUG Processing 308/734 atomic regions from SNP 92250 to 92850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,448 DEBUG Processing 534/677 atomic regions from SNP 160173 to 160773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,528 DEBUG Processing 309/734 atomic regions from SNP 92550 to 93150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,659 DEBUG Processing 535/677 atomic regions from SNP 160473 to 161073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,767 DEBUG Processing 310/734 atomic regions from SNP 92850 to 93450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,875 DEBUG Processing 536/677 atomic regions from SNP 160773 to 161373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,016 DEBUG Processing 311/734 atomic regions from SNP 93150 to 93750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,092 DEBUG Processing 537/677 atomic regions from SNP 161073 to 161673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,263 DEBUG Processing 312/734 atomic regions from SNP 93450 to 94050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,309 DEBUG Processing 538/677 atomic regions from SNP 161373 to 161973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,495 DEBUG Processing 313/734 atomic regions from SNP 93750 to 94350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,534 DEBUG Processing 539/677 atomic regions from SNP 161673 to 162273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,732 DEBUG Processing 314/734 atomic regions from SNP 94050 to 94650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,762 DEBUG Processing 540/677 atomic regions from SNP 161973 to 162573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,963 DEBUG Processing 315/734 atomic regions from SNP 94350 to 94950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,986 DEBUG Processing 541/677 atomic regions from SNP 162273 to 162873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,194 DEBUG Processing 316/734 atomic regions from SNP 94650 to 95250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,210 DEBUG Processing 542/677 atomic regions from SNP 162573 to 163173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,427 DEBUG Processing 317/734 atomic regions from SNP 94950 to 95550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,438 DEBUG Processing 543/677 atomic regions from SNP 162873 to 163473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,658 DEBUG Processing 318/734 atomic regions from SNP 95250 to 95850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,668 DEBUG Processing 544/677 atomic regions from SNP 163173 to 163773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,878 DEBUG Processing 319/734 atomic regions from SNP 95550 to 96150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,886 DEBUG Processing 545/677 atomic regions from SNP 163473 to 164073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,105 DEBUG Processing 546/677 atomic regions from SNP 163773 to 164373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,118 DEBUG Processing 320/734 atomic regions from SNP 95850 to 96450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,325 DEBUG Processing 547/677 atomic regions from SNP 164073 to 164673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,347 DEBUG Processing 321/734 atomic regions from SNP 96150 to 96750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,541 DEBUG Processing 548/677 atomic regions from SNP 164373 to 164973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,578 DEBUG Processing 322/734 atomic regions from SNP 96450 to 97050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,752 DEBUG Processing 549/677 atomic regions from SNP 164673 to 165273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,818 DEBUG Processing 323/734 atomic regions from SNP 96750 to 97350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,967 DEBUG Processing 550/677 atomic regions from SNP 164973 to 165573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,061 DEBUG Processing 324/734 atomic regions from SNP 97050 to 97650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,198 DEBUG Processing 551/677 atomic regions from SNP 165273 to 165873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,309 DEBUG Processing 325/734 atomic regions from SNP 97350 to 97950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,408 DEBUG Processing 552/677 atomic regions from SNP 165573 to 166173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,571 DEBUG Processing 326/734 atomic regions from SNP 97650 to 98250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,620 DEBUG Processing 553/677 atomic regions from SNP 165873 to 166473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,828 DEBUG Processing 327/734 atomic regions from SNP 97950 to 98550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,839 DEBUG Processing 554/677 atomic regions from SNP 166173 to 166773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,061 DEBUG Processing 555/677 atomic regions from SNP 166473 to 167073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,082 DEBUG Processing 328/734 atomic regions from SNP 98250 to 98850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,280 DEBUG Processing 556/677 atomic regions from SNP 166773 to 167373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,338 DEBUG Processing 329/734 atomic regions from SNP 98550 to 99150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,502 DEBUG Processing 557/677 atomic regions from SNP 167073 to 167673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,591 DEBUG Processing 330/734 atomic regions from SNP 98850 to 99450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,712 DEBUG Processing 558/677 atomic regions from SNP 167373 to 167973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,829 DEBUG Processing 331/734 atomic regions from SNP 99150 to 99750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,927 DEBUG Processing 559/677 atomic regions from SNP 167673 to 168273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,072 DEBUG Processing 332/734 atomic regions from SNP 99450 to 100050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,143 DEBUG Processing 560/677 atomic regions from SNP 167973 to 168573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,316 DEBUG Processing 333/734 atomic regions from SNP 99750 to 100350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,364 DEBUG Processing 561/677 atomic regions from SNP 168273 to 168873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,564 DEBUG Processing 334/734 atomic regions from SNP 100050 to 100650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,588 DEBUG Processing 562/677 atomic regions from SNP 168573 to 169173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,814 DEBUG Processing 563/677 atomic regions from SNP 168873 to 169473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,815 DEBUG Processing 335/734 atomic regions from SNP 100350 to 100950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,040 DEBUG Processing 564/677 atomic regions from SNP 169173 to 169773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,069 DEBUG Processing 336/734 atomic regions from SNP 100650 to 101250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,256 DEBUG Processing 565/677 atomic regions from SNP 169473 to 170073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,318 DEBUG Processing 337/734 atomic regions from SNP 100950 to 101550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,464 DEBUG Processing 566/677 atomic regions from SNP 169773 to 170373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,555 DEBUG Processing 338/734 atomic regions from SNP 101250 to 101850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,675 DEBUG Processing 567/677 atomic regions from SNP 170073 to 170673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,782 DEBUG Processing 339/734 atomic regions from SNP 101550 to 102150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,882 DEBUG Processing 568/677 atomic regions from SNP 170373 to 170973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,018 DEBUG Processing 340/734 atomic regions from SNP 101850 to 102450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,092 DEBUG Processing 569/677 atomic regions from SNP 170673 to 171273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,246 DEBUG Processing 341/734 atomic regions from SNP 102150 to 102750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,307 DEBUG Processing 570/677 atomic regions from SNP 170973 to 171573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,494 DEBUG Processing 342/734 atomic regions from SNP 102450 to 103050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,528 DEBUG Processing 571/677 atomic regions from SNP 171273 to 171873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,747 DEBUG Processing 343/734 atomic regions from SNP 102750 to 103350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,754 DEBUG Processing 572/677 atomic regions from SNP 171573 to 172173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,985 DEBUG Processing 344/734 atomic regions from SNP 103050 to 103650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,986 DEBUG Processing 573/677 atomic regions from SNP 171873 to 172473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,216 DEBUG Processing 574/677 atomic regions from SNP 172173 to 172773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,234 DEBUG Processing 345/734 atomic regions from SNP 103350 to 103950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,448 DEBUG Processing 575/677 atomic regions from SNP 172473 to 173073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,472 DEBUG Processing 346/734 atomic regions from SNP 103650 to 104250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,677 DEBUG Processing 576/677 atomic regions from SNP 172773 to 173373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,706 DEBUG Processing 347/734 atomic regions from SNP 103950 to 104550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,899 DEBUG Processing 577/677 atomic regions from SNP 173073 to 173673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,935 DEBUG Processing 348/734 atomic regions from SNP 104250 to 104850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,116 DEBUG Processing 578/677 atomic regions from SNP 173373 to 173973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,162 DEBUG Processing 349/734 atomic regions from SNP 104550 to 105150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,331 DEBUG Processing 579/677 atomic regions from SNP 173673 to 174273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,377 DEBUG Segmenting atomic regions: 2025-01-31 09:54:37,389 DEBUG Processing 350/734 atomic regions from SNP 104850 to 105450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,470 DEBUG Processing 1/730 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,542 DEBUG Processing 580/677 atomic regions from SNP 173973 to 174573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,625 DEBUG Processing 351/734 atomic regions from SNP 105150 to 105750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,703 DEBUG Processing 2/730 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,743 DEBUG Segmenting atomic regions: 2025-01-31 09:54:37,752 DEBUG Processing 581/677 atomic regions from SNP 174273 to 174873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,832 DEBUG Processing 1/686 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,858 DEBUG Processing 352/734 atomic regions from SNP 105450 to 106050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,937 DEBUG Processing 3/730 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,964 DEBUG Processing 582/677 atomic regions from SNP 174573 to 175173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,051 DEBUG Processing 2/686 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,112 DEBUG Processing 353/734 atomic regions from SNP 105750 to 106350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,167 DEBUG Processing 4/730 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,176 DEBUG Processing 583/677 atomic regions from SNP 174873 to 175473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,265 DEBUG Processing 3/686 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,372 DEBUG Processing 354/734 atomic regions from SNP 106050 to 106650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,395 DEBUG Processing 5/730 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,404 DEBUG Processing 584/677 atomic regions from SNP 175173 to 175773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,501 DEBUG Processing 4/686 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,619 DEBUG Processing 355/734 atomic regions from SNP 106350 to 106950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,624 DEBUG Processing 6/730 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,626 DEBUG Processing 585/677 atomic regions from SNP 175473 to 176073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,735 DEBUG Processing 5/686 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,853 DEBUG Processing 586/677 atomic regions from SNP 175773 to 176373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,864 DEBUG Processing 7/730 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,866 DEBUG Processing 356/734 atomic regions from SNP 106650 to 107250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,971 DEBUG Processing 6/686 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,082 DEBUG Processing 587/677 atomic regions from SNP 176073 to 176673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,107 DEBUG Processing 8/730 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,131 DEBUG Processing 357/734 atomic regions from SNP 106950 to 107550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,190 DEBUG Processing 7/686 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,309 DEBUG Processing 588/677 atomic regions from SNP 176373 to 176973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,336 DEBUG Processing 9/730 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,390 DEBUG Processing 358/734 atomic regions from SNP 107250 to 107850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,417 DEBUG Processing 8/686 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,531 DEBUG Processing 589/677 atomic regions from SNP 176673 to 177273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,567 DEBUG Processing 10/730 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,648 DEBUG Processing 359/734 atomic regions from SNP 107550 to 108150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,648 DEBUG Processing 9/686 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,759 DEBUG Processing 590/677 atomic regions from SNP 176973 to 177573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,802 DEBUG Processing 11/730 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,879 DEBUG Processing 10/686 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,913 DEBUG Processing 360/734 atomic regions from SNP 107850 to 108450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,991 DEBUG Processing 591/677 atomic regions from SNP 177273 to 177873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,040 DEBUG Processing 12/730 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,107 DEBUG Processing 11/686 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,168 DEBUG Processing 361/734 atomic regions from SNP 108150 to 108750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,222 DEBUG Processing 592/677 atomic regions from SNP 177573 to 178173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,314 DEBUG Processing 13/730 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,340 DEBUG Processing 12/686 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,437 DEBUG Processing 362/734 atomic regions from SNP 108450 to 109050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,470 DEBUG Processing 593/677 atomic regions from SNP 177873 to 178473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,583 DEBUG Processing 14/730 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,585 DEBUG Processing 13/686 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,719 DEBUG Processing 363/734 atomic regions from SNP 108750 to 109350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,722 DEBUG Processing 594/677 atomic regions from SNP 178173 to 178773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,824 DEBUG Processing 15/730 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,828 DEBUG Processing 14/686 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,973 DEBUG Processing 595/677 atomic regions from SNP 178473 to 179073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,980 DEBUG Processing 364/734 atomic regions from SNP 109050 to 109650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,076 DEBUG Processing 15/686 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,079 DEBUG Processing 16/730 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,217 DEBUG Processing 596/677 atomic regions from SNP 178773 to 179373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,244 DEBUG Processing 365/734 atomic regions from SNP 109350 to 109950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,323 DEBUG Processing 16/686 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,327 DEBUG Processing 17/730 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,453 DEBUG Processing 597/677 atomic regions from SNP 179073 to 179673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,489 DEBUG Processing 366/734 atomic regions from SNP 109650 to 110250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,576 DEBUG Processing 18/730 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,581 DEBUG Processing 17/686 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,681 DEBUG Processing 598/677 atomic regions from SNP 179373 to 179973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,722 DEBUG Processing 367/734 atomic regions from SNP 109950 to 110550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,815 DEBUG Processing 18/686 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,819 DEBUG Processing 19/730 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,905 DEBUG Processing 599/677 atomic regions from SNP 179673 to 180273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,972 DEBUG Processing 368/734 atomic regions from SNP 110250 to 110850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,046 DEBUG Processing 19/686 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,053 DEBUG Processing 20/730 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,131 DEBUG Processing 600/677 atomic regions from SNP 179973 to 180573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,228 DEBUG Processing 369/734 atomic regions from SNP 110550 to 111150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,268 DEBUG Processing 20/686 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,299 DEBUG Processing 21/730 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,347 DEBUG Processing 601/677 atomic regions from SNP 180273 to 180873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,485 DEBUG Processing 370/734 atomic regions from SNP 110850 to 111450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,494 DEBUG Processing 21/686 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,537 DEBUG Processing 22/730 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,560 DEBUG Processing 602/677 atomic regions from SNP 180573 to 181173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,723 DEBUG Processing 22/686 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,752 DEBUG Processing 371/734 atomic regions from SNP 111150 to 111750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,769 DEBUG Processing 23/730 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,780 DEBUG Processing 603/677 atomic regions from SNP 180873 to 181473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,938 DEBUG Processing 23/686 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,981 DEBUG Processing 24/730 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,996 DEBUG Processing 604/677 atomic regions from SNP 181173 to 181773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,002 DEBUG Processing 372/734 atomic regions from SNP 111450 to 112050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,152 DEBUG Processing 24/686 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,198 DEBUG Processing 25/730 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,217 DEBUG Processing 605/677 atomic regions from SNP 181473 to 182073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,257 DEBUG Processing 373/734 atomic regions from SNP 111750 to 112350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,365 DEBUG Processing 25/686 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,415 DEBUG Processing 26/730 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,445 DEBUG Processing 606/677 atomic regions from SNP 181773 to 182373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,520 DEBUG Processing 374/734 atomic regions from SNP 112050 to 112650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,579 DEBUG Processing 26/686 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,630 DEBUG Processing 27/730 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,661 DEBUG Processing 607/677 atomic regions from SNP 182073 to 182673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,773 DEBUG Processing 375/734 atomic regions from SNP 112350 to 112950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,793 DEBUG Processing 27/686 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,852 DEBUG Processing 28/730 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,882 DEBUG Processing 608/677 atomic regions from SNP 182373 to 182973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,010 DEBUG Processing 28/686 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,021 DEBUG Processing 376/734 atomic regions from SNP 112650 to 113250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,076 DEBUG Processing 29/730 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,105 DEBUG Processing 609/677 atomic regions from SNP 182673 to 183273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,224 DEBUG Processing 29/686 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,279 DEBUG Processing 377/734 atomic regions from SNP 112950 to 113550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,301 DEBUG Processing 30/730 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,335 DEBUG Processing 610/677 atomic regions from SNP 182973 to 183573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,448 DEBUG Processing 30/686 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,521 DEBUG Processing 31/730 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,543 DEBUG Processing 378/734 atomic regions from SNP 113250 to 113850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,566 DEBUG Processing 611/677 atomic regions from SNP 183273 to 183873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,666 DEBUG Processing 31/686 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,736 DEBUG Processing 32/730 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,801 DEBUG Processing 612/677 atomic regions from SNP 183573 to 184173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,804 DEBUG Processing 379/734 atomic regions from SNP 113550 to 114150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,881 DEBUG Processing 32/686 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,948 DEBUG Processing 33/730 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,045 DEBUG Processing 613/677 atomic regions from SNP 183873 to 184473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,075 DEBUG Processing 380/734 atomic regions from SNP 113850 to 114450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,107 DEBUG Processing 33/686 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,170 DEBUG Processing 34/730 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,285 DEBUG Processing 614/677 atomic regions from SNP 184173 to 184773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,343 DEBUG Processing 381/734 atomic regions from SNP 114150 to 114750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,362 DEBUG Processing 34/686 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,395 DEBUG Processing 35/730 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,523 DEBUG Processing 615/677 atomic regions from SNP 184473 to 185073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,599 DEBUG Processing 382/734 atomic regions from SNP 114450 to 115050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,616 DEBUG Processing 35/686 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,621 DEBUG Processing 36/730 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,760 DEBUG Processing 616/677 atomic regions from SNP 184773 to 185373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,839 DEBUG Processing 37/730 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,842 DEBUG Processing 383/734 atomic regions from SNP 114750 to 115350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,858 DEBUG Processing 36/686 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,995 DEBUG Processing 617/677 atomic regions from SNP 185073 to 185673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,054 DEBUG Processing 38/730 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,081 DEBUG Processing 37/686 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,105 DEBUG Processing 384/734 atomic regions from SNP 115050 to 115650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,235 DEBUG Processing 618/677 atomic regions from SNP 185373 to 185973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,275 DEBUG Processing 39/730 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,306 DEBUG Processing 38/686 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,368 DEBUG Processing 385/734 atomic regions from SNP 115350 to 115950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,472 DEBUG Processing 619/677 atomic regions from SNP 185673 to 186273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,500 DEBUG Processing 40/730 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,544 DEBUG Processing 39/686 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,598 DEBUG Processing 386/734 atomic regions from SNP 115650 to 116250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,700 DEBUG Processing 620/677 atomic regions from SNP 185973 to 186573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,722 DEBUG Processing 41/730 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,784 DEBUG Processing 40/686 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,853 DEBUG Processing 387/734 atomic regions from SNP 115950 to 116550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,933 DEBUG Processing 621/677 atomic regions from SNP 186273 to 186873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,947 DEBUG Processing 42/730 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,007 DEBUG Processing 41/686 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,115 DEBUG Processing 388/734 atomic regions from SNP 116250 to 116850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,163 DEBUG Processing 622/677 atomic regions from SNP 186573 to 187173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,172 DEBUG Processing 43/730 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,234 DEBUG Processing 42/686 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,380 DEBUG Processing 389/734 atomic regions from SNP 116550 to 117150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,395 DEBUG Processing 623/677 atomic regions from SNP 186873 to 187473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,397 DEBUG Processing 44/730 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,462 DEBUG Processing 43/686 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,623 DEBUG Processing 45/730 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,624 DEBUG Processing 624/677 atomic regions from SNP 187173 to 187773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,638 DEBUG Processing 390/734 atomic regions from SNP 116850 to 117450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,690 DEBUG Processing 44/686 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,848 DEBUG Processing 46/730 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,853 DEBUG Processing 625/677 atomic regions from SNP 187473 to 188073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,890 DEBUG Processing 391/734 atomic regions from SNP 117150 to 117750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,917 DEBUG Processing 45/686 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,072 DEBUG Processing 47/730 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,082 DEBUG Processing 626/677 atomic regions from SNP 187773 to 188373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,125 DEBUG Processing 392/734 atomic regions from SNP 117450 to 118050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,141 DEBUG Processing 46/686 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,299 DEBUG Processing 48/730 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,311 DEBUG Processing 627/677 atomic regions from SNP 188073 to 188673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,362 DEBUG Processing 393/734 atomic regions from SNP 117750 to 118350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,363 DEBUG Processing 47/686 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,515 DEBUG Processing 49/730 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,541 DEBUG Processing 628/677 atomic regions from SNP 188373 to 188973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,592 DEBUG Processing 48/686 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,610 DEBUG Processing 394/734 atomic regions from SNP 118050 to 118650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,732 DEBUG Processing 50/730 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,775 DEBUG Processing 629/677 atomic regions from SNP 188673 to 189273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,818 DEBUG Processing 49/686 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,862 DEBUG Processing 395/734 atomic regions from SNP 118350 to 118950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,943 DEBUG Processing 51/730 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,003 DEBUG Processing 630/677 atomic regions from SNP 188973 to 189573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,048 DEBUG Processing 50/686 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,096 DEBUG Processing 396/734 atomic regions from SNP 118650 to 119250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,157 DEBUG Processing 52/730 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,231 DEBUG Processing 631/677 atomic regions from SNP 189273 to 189873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,290 DEBUG Processing 51/686 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,332 DEBUG Processing 397/734 atomic regions from SNP 118950 to 119550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,381 DEBUG Processing 53/730 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,456 DEBUG Processing 632/677 atomic regions from SNP 189573 to 190173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,525 DEBUG Processing 52/686 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,560 DEBUG Processing 398/734 atomic regions from SNP 119250 to 119850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,599 DEBUG Processing 54/730 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,682 DEBUG Processing 633/677 atomic regions from SNP 189873 to 190473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,770 DEBUG Processing 53/686 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,795 DEBUG Processing 399/734 atomic regions from SNP 119550 to 120150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,821 DEBUG Processing 55/730 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,912 DEBUG Processing 634/677 atomic regions from SNP 190173 to 190773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,019 DEBUG Processing 54/686 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,031 DEBUG Processing 400/734 atomic regions from SNP 119850 to 120450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,039 DEBUG Processing 56/730 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,136 DEBUG Processing 635/677 atomic regions from SNP 190473 to 191073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,261 DEBUG Processing 57/730 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,265 DEBUG Processing 401/734 atomic regions from SNP 120150 to 120750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,269 DEBUG Processing 55/686 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,362 DEBUG Processing 636/677 atomic regions from SNP 190773 to 191373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,484 DEBUG Processing 58/730 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,498 DEBUG Processing 402/734 atomic regions from SNP 120450 to 121050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,516 DEBUG Processing 56/686 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,594 DEBUG Processing 637/677 atomic regions from SNP 191073 to 191673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,700 DEBUG Processing 59/730 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,731 DEBUG Processing 403/734 atomic regions from SNP 120750 to 121350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,759 DEBUG Processing 57/686 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,829 DEBUG Processing 638/677 atomic regions from SNP 191373 to 191973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,929 DEBUG Processing 60/730 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,969 DEBUG Processing 404/734 atomic regions from SNP 121050 to 121650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,990 DEBUG Processing 58/686 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,061 DEBUG Processing 639/677 atomic regions from SNP 191673 to 192273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,142 DEBUG Processing 61/730 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,206 DEBUG Processing 405/734 atomic regions from SNP 121350 to 121950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,218 DEBUG Processing 59/686 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,287 DEBUG Processing 640/677 atomic regions from SNP 191973 to 192573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,364 DEBUG Processing 62/730 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,437 DEBUG Processing 406/734 atomic regions from SNP 121650 to 122250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,458 DEBUG Processing 60/686 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,516 DEBUG Processing 641/677 atomic regions from SNP 192273 to 192873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,585 DEBUG Processing 63/730 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,664 DEBUG Processing 407/734 atomic regions from SNP 121950 to 122550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,700 DEBUG Processing 61/686 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,743 DEBUG Processing 642/677 atomic regions from SNP 192573 to 193173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,810 DEBUG Processing 64/730 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,898 DEBUG Processing 408/734 atomic regions from SNP 122250 to 122850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,951 DEBUG Processing 62/686 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,974 DEBUG Processing 643/677 atomic regions from SNP 192873 to 193473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,041 DEBUG Processing 65/730 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,130 DEBUG Processing 409/734 atomic regions from SNP 122550 to 123150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,185 DEBUG Processing 63/686 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,206 DEBUG Processing 644/677 atomic regions from SNP 193173 to 193773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,269 DEBUG Processing 66/730 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,365 DEBUG Processing 410/734 atomic regions from SNP 122850 to 123450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,407 DEBUG Processing 64/686 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,435 DEBUG Processing 645/677 atomic regions from SNP 193473 to 194073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,495 DEBUG Processing 67/730 atomic regions from SNP 19866 to 20467 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,608 DEBUG Processing 411/734 atomic regions from SNP 123150 to 123750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,639 DEBUG Processing 65/686 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,666 DEBUG Processing 646/677 atomic regions from SNP 193773 to 194373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,721 DEBUG Processing 68/730 atomic regions from SNP 20167 to 20768 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,845 DEBUG Processing 412/734 atomic regions from SNP 123450 to 124050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,867 DEBUG Processing 66/686 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,900 DEBUG Processing 647/677 atomic regions from SNP 194073 to 194673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,948 DEBUG Processing 69/730 atomic regions from SNP 20468 to 21069 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,090 DEBUG Processing 67/686 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,093 DEBUG Processing 413/734 atomic regions from SNP 123750 to 124350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,136 DEBUG Processing 648/677 atomic regions from SNP 194373 to 194973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,178 DEBUG Processing 70/730 atomic regions from SNP 20769 to 21370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,312 DEBUG Processing 68/686 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,347 DEBUG Processing 414/734 atomic regions from SNP 124050 to 124650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,365 DEBUG Processing 649/677 atomic regions from SNP 194673 to 195273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,397 DEBUG Processing 71/730 atomic regions from SNP 21070 to 21671 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,529 DEBUG Processing 69/686 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,597 DEBUG Processing 650/677 atomic regions from SNP 194973 to 195573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,603 DEBUG Processing 415/734 atomic regions from SNP 124350 to 124950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,624 DEBUG Processing 72/730 atomic regions from SNP 21371 to 21972 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,747 DEBUG Processing 70/686 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,835 DEBUG Processing 651/677 atomic regions from SNP 195273 to 195873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,852 DEBUG Processing 73/730 atomic regions from SNP 21672 to 22273 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,855 DEBUG Processing 416/734 atomic regions from SNP 124650 to 125250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,958 DEBUG Processing 71/686 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,064 DEBUG Processing 652/677 atomic regions from SNP 195573 to 196173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,075 DEBUG Processing 74/730 atomic regions from SNP 21973 to 22574 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,098 DEBUG Processing 417/734 atomic regions from SNP 124950 to 125550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,175 DEBUG Processing 72/686 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,295 DEBUG Processing 75/730 atomic regions from SNP 22274 to 22875 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,296 DEBUG Processing 653/677 atomic regions from SNP 195873 to 196473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,355 DEBUG Processing 418/734 atomic regions from SNP 125250 to 125850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,396 DEBUG Processing 73/686 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,518 DEBUG Processing 76/730 atomic regions from SNP 22575 to 23176 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,519 DEBUG Processing 654/677 atomic regions from SNP 196173 to 196773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,618 DEBUG Processing 419/734 atomic regions from SNP 125550 to 126150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,624 DEBUG Processing 74/686 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,737 DEBUG Processing 655/677 atomic regions from SNP 196473 to 197073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,739 DEBUG Processing 77/730 atomic regions from SNP 22876 to 23477 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,852 DEBUG Processing 75/686 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,861 DEBUG Processing 420/734 atomic regions from SNP 125850 to 126450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,961 DEBUG Processing 78/730 atomic regions from SNP 23177 to 23778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,971 DEBUG Processing 656/677 atomic regions from SNP 196773 to 197373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,077 DEBUG Processing 76/686 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,098 DEBUG Processing 421/734 atomic regions from SNP 126150 to 126750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,177 DEBUG Processing 79/730 atomic regions from SNP 23478 to 24079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,201 DEBUG Processing 657/677 atomic regions from SNP 197073 to 197673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,297 DEBUG Processing 77/686 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,336 DEBUG Processing 422/734 atomic regions from SNP 126450 to 127050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,397 DEBUG Processing 80/730 atomic regions from SNP 23779 to 24380 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,443 DEBUG Processing 658/677 atomic regions from SNP 197373 to 197973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,519 DEBUG Processing 78/686 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,584 DEBUG Processing 423/734 atomic regions from SNP 126750 to 127350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,623 DEBUG Processing 81/730 atomic regions from SNP 24080 to 24681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,694 DEBUG Processing 659/677 atomic regions from SNP 197673 to 198273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,735 DEBUG Processing 79/686 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,840 DEBUG Processing 424/734 atomic regions from SNP 127050 to 127650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,848 DEBUG Processing 82/730 atomic regions from SNP 24381 to 24982 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,931 DEBUG Processing 660/677 atomic regions from SNP 197973 to 198573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,947 DEBUG Processing 80/686 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,077 DEBUG Processing 83/730 atomic regions from SNP 24682 to 25283 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,110 DEBUG Processing 425/734 atomic regions from SNP 127350 to 127950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,164 DEBUG Processing 81/686 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,175 DEBUG Processing 661/677 atomic regions from SNP 198273 to 198873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,309 DEBUG Processing 84/730 atomic regions from SNP 24983 to 25584 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,363 DEBUG Processing 426/734 atomic regions from SNP 127650 to 128250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,389 DEBUG Processing 82/686 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,430 DEBUG Processing 662/677 atomic regions from SNP 198573 to 199173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,523 DEBUG Processing 85/730 atomic regions from SNP 25284 to 25885 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,606 DEBUG Processing 83/686 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,607 DEBUG Processing 427/734 atomic regions from SNP 127950 to 128550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,682 DEBUG Processing 663/677 atomic regions from SNP 198873 to 199473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,744 DEBUG Processing 86/730 atomic regions from SNP 25585 to 26186 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,829 DEBUG Processing 84/686 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,848 DEBUG Processing 428/734 atomic regions from SNP 128250 to 128850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,932 DEBUG Processing 664/677 atomic regions from SNP 199173 to 199773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,964 DEBUG Processing 87/730 atomic regions from SNP 25886 to 26487 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,056 DEBUG Processing 85/686 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,082 DEBUG Processing 429/734 atomic regions from SNP 128550 to 129150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,168 DEBUG Processing 665/677 atomic regions from SNP 199473 to 200073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,179 DEBUG Processing 88/730 atomic regions from SNP 26187 to 26788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,275 DEBUG Processing 86/686 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,311 DEBUG Processing 430/734 atomic regions from SNP 128850 to 129450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,397 DEBUG Processing 89/730 atomic regions from SNP 26488 to 27089 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,398 DEBUG Processing 666/677 atomic regions from SNP 199773 to 200373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,497 DEBUG Processing 87/686 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,544 DEBUG Processing 431/734 atomic regions from SNP 129150 to 129750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,613 DEBUG Processing 90/730 atomic regions from SNP 26789 to 27390 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,624 DEBUG Processing 667/677 atomic regions from SNP 200073 to 200673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,714 DEBUG Processing 88/686 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,774 DEBUG Processing 432/734 atomic regions from SNP 129450 to 130050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,831 DEBUG Processing 91/730 atomic regions from SNP 27090 to 27691 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,854 DEBUG Processing 668/677 atomic regions from SNP 200373 to 200973 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,931 DEBUG Processing 89/686 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,004 DEBUG Processing 433/734 atomic regions from SNP 129750 to 130350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,049 DEBUG Processing 92/730 atomic regions from SNP 27391 to 27992 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,093 DEBUG Processing 669/677 atomic regions from SNP 200673 to 201273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,149 DEBUG Processing 90/686 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,234 DEBUG Processing 434/734 atomic regions from SNP 130050 to 130650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,272 DEBUG Processing 93/730 atomic regions from SNP 27692 to 28293 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,329 DEBUG Processing 670/677 atomic regions from SNP 200973 to 201573 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,372 DEBUG Processing 91/686 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,465 DEBUG Processing 435/734 atomic regions from SNP 130350 to 130950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,493 DEBUG Processing 94/730 atomic regions from SNP 27993 to 28594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,559 DEBUG Processing 671/677 atomic regions from SNP 201273 to 201873 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,594 DEBUG Processing 92/686 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,693 DEBUG Processing 436/734 atomic regions from SNP 130650 to 131250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,710 DEBUG Processing 95/730 atomic regions from SNP 28294 to 28895 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,786 DEBUG Processing 672/677 atomic regions from SNP 201573 to 202173 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,818 DEBUG Processing 93/686 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,920 DEBUG Processing 437/734 atomic regions from SNP 130950 to 131550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,924 DEBUG Processing 96/730 atomic regions from SNP 28595 to 29196 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,967 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:54:59,015 DEBUG Processing 673/677 atomic regions from SNP 201873 to 202473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,043 DEBUG Processing 94/686 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,142 DEBUG Processing 97/730 atomic regions from SNP 28896 to 29497 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,155 DEBUG Processing 438/734 atomic regions from SNP 131250 to 131850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,241 DEBUG Processing 674/677 atomic regions from SNP 202173 to 202773 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,269 DEBUG Processing 95/686 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,362 DEBUG Processing 98/730 atomic regions from SNP 29197 to 29798 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,411 DEBUG Processing 439/734 atomic regions from SNP 131550 to 132150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,467 DEBUG Processing 675/677 atomic regions from SNP 202473 to 203073 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,491 DEBUG Processing 96/686 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,580 DEBUG Processing 99/730 atomic regions from SNP 29498 to 30099 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,643 DEBUG Processing 440/734 atomic regions from SNP 131850 to 132450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,693 DEBUG Processing 676/677 atomic regions from SNP 202773 to 203373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,711 DEBUG Processing 97/686 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,804 DEBUG Processing 100/730 atomic regions from SNP 29799 to 30400 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,888 DEBUG Processing 441/734 atomic regions from SNP 132150 to 132750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,921 DEBUG Processing 677/677 atomic regions from SNP 203073 to 203673 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,937 DEBUG Processing 98/686 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,034 DEBUG Processing 101/730 atomic regions from SNP 30100 to 30701 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,059 DEBUG Unique SNPs positions in subchromosome 2: 203674 2025-01-31 09:55:00,143 DEBUG Processing 442/734 atomic regions from SNP 132450 to 133050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,156 DEBUG Processing 99/686 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,276 DEBUG Processing 102/730 atomic regions from SNP 30401 to 31002 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,379 DEBUG Processing 100/686 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,392 DEBUG Processing 443/734 atomic regions from SNP 132750 to 133350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,513 DEBUG Processing 103/730 atomic regions from SNP 30702 to 31303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,597 DEBUG Processing 101/686 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,616 DEBUG Processing 444/734 atomic regions from SNP 133050 to 133650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,758 DEBUG Processing 104/730 atomic regions from SNP 31003 to 31604 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,814 DEBUG Processing 102/686 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,840 DEBUG Processing 445/734 atomic regions from SNP 133350 to 133950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,997 DEBUG Processing 105/730 atomic regions from SNP 31304 to 31905 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,026 DEBUG Processing 103/686 atomic regions from SNP 30702 to 31303 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,062 DEBUG Processing 446/734 atomic regions from SNP 133650 to 134250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,229 DEBUG Processing 106/730 atomic regions from SNP 31605 to 32206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,264 DEBUG Processing 104/686 atomic regions from SNP 31003 to 31604 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,294 DEBUG Processing 447/734 atomic regions from SNP 133950 to 134550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,452 DEBUG Processing 107/730 atomic regions from SNP 31906 to 32507 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,524 DEBUG Processing 105/686 atomic regions from SNP 31304 to 31905 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,525 DEBUG Processing 448/734 atomic regions from SNP 134250 to 134850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,663 DEBUG Processing 108/730 atomic regions from SNP 32207 to 32808 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,765 DEBUG Processing 449/734 atomic regions from SNP 134550 to 135150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,783 DEBUG Processing 106/686 atomic regions from SNP 31605 to 32206 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,875 DEBUG Processing 109/730 atomic regions from SNP 32508 to 33109 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,003 DEBUG Processing 450/734 atomic regions from SNP 134850 to 135450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,026 DEBUG Processing 107/686 atomic regions from SNP 31906 to 32507 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,084 DEBUG Processing 110/730 atomic regions from SNP 32809 to 33410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,236 DEBUG Processing 451/734 atomic regions from SNP 135150 to 135750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,283 DEBUG Processing 108/686 atomic regions from SNP 32207 to 32808 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,291 DEBUG Processing 111/730 atomic regions from SNP 33110 to 33711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,471 DEBUG Processing 452/734 atomic regions from SNP 135450 to 136050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,512 DEBUG Processing 112/730 atomic regions from SNP 33411 to 34012 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,551 DEBUG Processing 109/686 atomic regions from SNP 32508 to 33109 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,704 DEBUG Processing 453/734 atomic regions from SNP 135750 to 136350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,735 DEBUG Processing 113/730 atomic regions from SNP 33712 to 34313 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,809 DEBUG Processing 110/686 atomic regions from SNP 32809 to 33410 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,931 DEBUG Processing 454/734 atomic regions from SNP 136050 to 136650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,950 DEBUG Processing 114/730 atomic regions from SNP 34013 to 34614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,025 DEBUG Processing 111/686 atomic regions from SNP 33110 to 33711 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,158 DEBUG Processing 455/734 atomic regions from SNP 136350 to 136950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,164 DEBUG Processing 115/730 atomic regions from SNP 34314 to 34915 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,239 DEBUG Processing 112/686 atomic regions from SNP 33411 to 34012 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,378 DEBUG Processing 116/730 atomic regions from SNP 34615 to 35216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,389 DEBUG Processing 456/734 atomic regions from SNP 136650 to 137250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,459 DEBUG Processing 113/686 atomic regions from SNP 33712 to 34313 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,610 DEBUG Processing 117/730 atomic regions from SNP 34916 to 35517 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,631 DEBUG Processing 457/734 atomic regions from SNP 136950 to 137550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,684 DEBUG Processing 114/686 atomic regions from SNP 34013 to 34614 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,842 DEBUG Processing 118/730 atomic regions from SNP 35217 to 35818 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,884 DEBUG Processing 458/734 atomic regions from SNP 137250 to 137850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,912 DEBUG Processing 115/686 atomic regions from SNP 34314 to 34915 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,080 DEBUG Processing 119/730 atomic regions from SNP 35518 to 36119 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,139 DEBUG Processing 459/734 atomic regions from SNP 137550 to 138150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,166 DEBUG Processing 116/686 atomic regions from SNP 34615 to 35216 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,315 DEBUG Processing 120/730 atomic regions from SNP 35819 to 36420 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,398 DEBUG Processing 460/734 atomic regions from SNP 137850 to 138450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,422 DEBUG Processing 117/686 atomic regions from SNP 34916 to 35517 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,553 DEBUG Processing 121/730 atomic regions from SNP 36120 to 36721 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,653 DEBUG Processing 461/734 atomic regions from SNP 138150 to 138750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,681 DEBUG Processing 118/686 atomic regions from SNP 35217 to 35818 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,736 DEBUG Subchromosome time: 190.09696639399044, subchromosome SNPs: 203674 2025-01-31 09:55:04,736 DEBUG Estimated BADs: [0.92, 2.76, 5.53, 2.76, 5.53, 2.76, 0.92, 2.76, 0.92, 1.38, 0.69, 2.76] SNP counts: [197, 22076, 26531, 25948, 23616, 27893, 8401, 5110, 16789, 15301, 12889, 19120] SNP IDs counts: [197, 22076, 26531, 25948, 23616, 27893, 8401, 5110, 16789, 15301, 12889, 19120] Critical gap: 615908bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.13Mbp[0.71Mbp], 20.02Mbp, 34.50Mbp, 51.84Mbp, 65.26Mbp, 80.79Mbp, 85.69Mbp, 88.58Mbp, 98.14Mbp, 106.66Mbp, 114.10Mbp, 124.90Mbp] 2025-01-31 09:55:04,736 DEBUG chr14 time: 190.09747638297267 s 2025-01-31 09:55:04,747 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:55:04,770 DEBUG Processing 122/730 atomic regions from SNP 36421 to 37022 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,865 DEBUG chr14: Fitting background model for 12 segments 2025-01-31 09:55:04,895 DEBUG Processing 462/734 atomic regions from SNP 138450 to 139050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,947 DEBUG Processing 119/686 atomic regions from SNP 35518 to 36119 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,989 DEBUG Processing 123/730 atomic regions from SNP 36722 to 37323 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,146 DEBUG Processing 463/734 atomic regions from SNP 138750 to 139350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,206 DEBUG Processing 120/686 atomic regions from SNP 35819 to 36420 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,212 DEBUG Processing 124/730 atomic regions from SNP 37023 to 37624 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,398 DEBUG Processing 464/734 atomic regions from SNP 139050 to 139650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,437 DEBUG Processing 125/730 atomic regions from SNP 37324 to 37925 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,469 DEBUG Processing 121/686 atomic regions from SNP 36120 to 36721 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,638 DEBUG Processing 465/734 atomic regions from SNP 139350 to 139950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,661 DEBUG Processing 126/730 atomic regions from SNP 37625 to 38226 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,727 DEBUG Processing 122/686 atomic regions from SNP 36421 to 37022 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,882 DEBUG Processing 466/734 atomic regions from SNP 139650 to 140250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,888 DEBUG Processing 127/730 atomic regions from SNP 37926 to 38527 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,992 DEBUG Processing 123/686 atomic regions from SNP 36722 to 37323 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,115 DEBUG Processing 128/730 atomic regions from SNP 38227 to 38828 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,129 DEBUG Processing 467/734 atomic regions from SNP 139950 to 140550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,281 DEBUG Processing 124/686 atomic regions from SNP 37023 to 37624 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,432 DEBUG Processing 129/730 atomic regions from SNP 38528 to 39129 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,696 DEBUG Processing 468/734 atomic regions from SNP 140250 to 140850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,871 DEBUG Processing 130/730 atomic regions from SNP 38829 to 39430 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,879 DEBUG Processing 125/686 atomic regions from SNP 37324 to 37925 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,974 DEBUG Processing 469/734 atomic regions from SNP 140550 to 141150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,124 DEBUG Processing 131/730 atomic regions from SNP 39130 to 39731 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,188 DEBUG Processing 126/686 atomic regions from SNP 37625 to 38226 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,237 DEBUG Processing 470/734 atomic regions from SNP 140850 to 141450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,388 DEBUG Processing 132/730 atomic regions from SNP 39431 to 40032 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,476 DEBUG Processing 127/686 atomic regions from SNP 37926 to 38527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,504 DEBUG Processing 471/734 atomic regions from SNP 141150 to 141750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,617 DEBUG Processing 133/730 atomic regions from SNP 39732 to 40333 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,721 DEBUG Processing 128/686 atomic regions from SNP 38227 to 38828 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,759 DEBUG Processing 472/734 atomic regions from SNP 141450 to 142050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,899 DEBUG Processing 134/730 atomic regions from SNP 40033 to 40634 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,010 DEBUG Processing 129/686 atomic regions from SNP 38528 to 39129 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,055 DEBUG Processing 473/734 atomic regions from SNP 141750 to 142350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,279 DEBUG Processing 135/730 atomic regions from SNP 40334 to 40935 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,347 DEBUG Processing 130/686 atomic regions from SNP 38829 to 39430 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,389 DEBUG Processing 474/734 atomic regions from SNP 142050 to 142650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,673 DEBUG Processing 136/730 atomic regions from SNP 40635 to 41236 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,725 DEBUG Processing 131/686 atomic regions from SNP 39130 to 39731 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,766 DEBUG Processing 475/734 atomic regions from SNP 142350 to 142950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,958 DEBUG Processing 137/730 atomic regions from SNP 40936 to 41537 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,015 DEBUG Processing 132/686 atomic regions from SNP 39431 to 40032 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,053 DEBUG Processing 476/734 atomic regions from SNP 142650 to 143250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,278 DEBUG Processing 138/730 atomic regions from SNP 41237 to 41838 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,348 DEBUG Processing 133/686 atomic regions from SNP 39732 to 40333 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,406 DEBUG Processing 477/734 atomic regions from SNP 142950 to 143550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,644 DEBUG Processing 139/730 atomic regions from SNP 41538 to 42139 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,710 DEBUG Processing 134/686 atomic regions from SNP 40033 to 40634 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,780 DEBUG Processing 478/734 atomic regions from SNP 143250 to 143850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,058 DEBUG Processing 140/730 atomic regions from SNP 41839 to 42440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,093 DEBUG Processing 135/686 atomic regions from SNP 40334 to 40935 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,232 DEBUG Processing 479/734 atomic regions from SNP 143550 to 144150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,431 DEBUG Processing 141/730 atomic regions from SNP 42140 to 42741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,447 DEBUG Processing 136/686 atomic regions from SNP 40635 to 41236 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,588 DEBUG Processing 480/734 atomic regions from SNP 143850 to 144450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,831 DEBUG Processing 142/730 atomic regions from SNP 42441 to 43042 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,891 DEBUG Processing 137/686 atomic regions from SNP 40936 to 41537 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,896 DEBUG Processing 481/734 atomic regions from SNP 144150 to 144750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,145 DEBUG Processing 143/730 atomic regions from SNP 42742 to 43343 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,268 DEBUG Processing 482/734 atomic regions from SNP 144450 to 145050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,273 DEBUG Processing 138/686 atomic regions from SNP 41237 to 41838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,495 DEBUG Processing 144/730 atomic regions from SNP 43043 to 43644 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,646 DEBUG Processing 483/734 atomic regions from SNP 144750 to 145350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,649 DEBUG Processing 139/686 atomic regions from SNP 41538 to 42139 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,863 DEBUG Processing 145/730 atomic regions from SNP 43344 to 43945 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,073 DEBUG Processing 140/686 atomic regions from SNP 41839 to 42440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,082 DEBUG Processing 484/734 atomic regions from SNP 145050 to 145650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,322 DEBUG Processing 146/730 atomic regions from SNP 43645 to 44246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,570 DEBUG Processing 141/686 atomic regions from SNP 42140 to 42740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,597 DEBUG Processing 485/734 atomic regions from SNP 145350 to 145950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,728 DEBUG Processing 147/730 atomic regions from SNP 43946 to 44547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,034 DEBUG Processing 142/686 atomic regions from SNP 42440 to 43040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,097 DEBUG Processing 486/734 atomic regions from SNP 145650 to 146250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,173 DEBUG Processing 148/730 atomic regions from SNP 44247 to 44848 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,500 DEBUG Processing 143/686 atomic regions from SNP 42740 to 43340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,549 DEBUG Processing 487/734 atomic regions from SNP 145950 to 146550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,587 DEBUG Processing 149/730 atomic regions from SNP 44548 to 45149 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,890 DEBUG Processing 144/686 atomic regions from SNP 43040 to 43640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,959 DEBUG Processing 150/730 atomic regions from SNP 44849 to 45450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,960 DEBUG Processing 488/734 atomic regions from SNP 146250 to 146850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,296 DEBUG Processing 145/686 atomic regions from SNP 43340 to 43940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,407 DEBUG Processing 489/734 atomic regions from SNP 146550 to 147150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,417 DEBUG Processing 151/730 atomic regions from SNP 45150 to 45751 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,713 DEBUG Processing 146/686 atomic regions from SNP 43640 to 44240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,836 DEBUG Processing 152/730 atomic regions from SNP 45451 to 46052 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,857 DEBUG Processing 490/734 atomic regions from SNP 146850 to 147450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,035 DEBUG Processing 147/686 atomic regions from SNP 43940 to 44540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,085 DEBUG Processing 153/730 atomic regions from SNP 45752 to 46353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,132 DEBUG Processing 491/734 atomic regions from SNP 147150 to 147750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,302 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:55:15,353 DEBUG chr12: Signal quantile: 0.995. signal threshold: 18. Best RMSEA: 0.047 2025-01-31 09:55:15,385 DEBUG Processing 148/686 atomic regions from SNP 44240 to 44840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,413 DEBUG Processing 154/730 atomic regions from SNP 46053 to 46654 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,461 DEBUG Processing 492/734 atomic regions from SNP 147450 to 148050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,750 DEBUG Processing 149/686 atomic regions from SNP 44540 to 45140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,775 DEBUG Processing 155/730 atomic regions from SNP 46354 to 46955 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,823 DEBUG Processing 493/734 atomic regions from SNP 147750 to 148350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,118 DEBUG Processing 156/730 atomic regions from SNP 46655 to 47256 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,124 DEBUG Processing 150/686 atomic regions from SNP 44840 to 45440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,145 DEBUG Processing 494/734 atomic regions from SNP 148050 to 148650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,479 DEBUG Processing 157/730 atomic regions from SNP 46956 to 47557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,509 DEBUG Processing 151/686 atomic regions from SNP 45140 to 45740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,528 DEBUG Processing 495/734 atomic regions from SNP 148350 to 148950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,869 DEBUG Processing 158/730 atomic regions from SNP 47257 to 47858 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,906 DEBUG Processing 152/686 atomic regions from SNP 45440 to 46040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,941 DEBUG Processing 496/734 atomic regions from SNP 148650 to 149250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,324 DEBUG Processing 159/730 atomic regions from SNP 47558 to 48159 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,334 DEBUG Processing 153/686 atomic regions from SNP 45740 to 46340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,402 DEBUG Processing 497/734 atomic regions from SNP 148950 to 149550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,610 DEBUG Processing 160/730 atomic regions from SNP 47859 to 48460 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,639 DEBUG Processing 154/686 atomic regions from SNP 46040 to 46640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,691 DEBUG Processing 498/734 atomic regions from SNP 149250 to 149850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,924 DEBUG Processing 161/730 atomic regions from SNP 48160 to 48761 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,012 DEBUG Processing 155/686 atomic regions from SNP 46340 to 46940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,077 DEBUG Processing 499/734 atomic regions from SNP 149550 to 150150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,311 DEBUG Processing 162/730 atomic regions from SNP 48461 to 49062 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,401 DEBUG Processing 156/686 atomic regions from SNP 46640 to 47240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,462 DEBUG Processing 500/734 atomic regions from SNP 149850 to 150450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,718 DEBUG Processing 163/730 atomic regions from SNP 48762 to 49363 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,819 DEBUG Processing 157/686 atomic regions from SNP 46940 to 47540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,872 DEBUG Processing 501/734 atomic regions from SNP 150150 to 150750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,050 DEBUG Processing 164/730 atomic regions from SNP 49063 to 49664 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,188 DEBUG Processing 158/686 atomic regions from SNP 47240 to 47840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,319 DEBUG Processing 502/734 atomic regions from SNP 150450 to 151050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,440 DEBUG Processing 165/730 atomic regions from SNP 49364 to 49965 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,585 DEBUG Processing 159/686 atomic regions from SNP 47540 to 48140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,732 DEBUG Processing 503/734 atomic regions from SNP 150750 to 151350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,738 DEBUG chr12 total SNP count: 202311 2025-01-31 09:55:19,738 DEBUG chr12 length: 120129022 2025-01-31 09:55:19,738 DEBUG ----------------------------------------- 2025-01-31 09:55:19,739 INFO Processing SNPs in chr12 2025-01-31 09:55:19,819 DEBUG Processing 166/730 atomic regions from SNP 49665 to 50266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,956 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 202311)] 2025-01-31 09:55:20,011 DEBUG Processing 160/686 atomic regions from SNP 47840 to 48440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,103 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:20,153 DEBUG Processing 504/734 atomic regions from SNP 151050 to 151650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,188 DEBUG Processing 167/730 atomic regions from SNP 49966 to 50567 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,459 DEBUG Processing 161/686 atomic regions from SNP 48140 to 48740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,534 DEBUG Processing 505/734 atomic regions from SNP 151350 to 151950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,560 DEBUG Processing 168/730 atomic regions from SNP 50267 to 50868 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,702 DEBUG Processing 162/686 atomic regions from SNP 48440 to 49040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,825 DEBUG Processing 506/734 atomic regions from SNP 151650 to 152250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,856 DEBUG Processing 169/730 atomic regions from SNP 50568 to 51169 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,013 DEBUG Processing 163/686 atomic regions from SNP 48740 to 49340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,176 DEBUG Processing 507/734 atomic regions from SNP 151950 to 152550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,183 DEBUG Processing 170/730 atomic regions from SNP 50869 to 51470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,351 DEBUG Processing 164/686 atomic regions from SNP 49040 to 49640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,537 DEBUG Processing 171/730 atomic regions from SNP 51170 to 51771 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,551 DEBUG Processing 508/734 atomic regions from SNP 152250 to 152850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,692 DEBUG Processing 165/686 atomic regions from SNP 49340 to 49940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,887 DEBUG Processing 172/730 atomic regions from SNP 51471 to 52072 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,899 DEBUG Processing 509/734 atomic regions from SNP 152550 to 153150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,965 DEBUG Processing 166/686 atomic regions from SNP 49640 to 50240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,165 DEBUG Processing 173/730 atomic regions from SNP 51772 to 52373 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,176 DEBUG Processing 510/734 atomic regions from SNP 152850 to 153450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,237 DEBUG Processing 167/686 atomic regions from SNP 49940 to 50540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,426 DEBUG Processing 174/730 atomic regions from SNP 52073 to 52674 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,437 DEBUG Processing 511/734 atomic regions from SNP 153150 to 153750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,492 DEBUG Processing 168/686 atomic regions from SNP 50240 to 50840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,728 DEBUG Processing 175/730 atomic regions from SNP 52374 to 52975 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,805 DEBUG Processing 512/734 atomic regions from SNP 153450 to 154050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,842 DEBUG Processing 169/686 atomic regions from SNP 50540 to 51140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,996 DEBUG Processing 176/730 atomic regions from SNP 52675 to 53276 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,061 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:55:23,090 DEBUG Processing 513/734 atomic regions from SNP 153750 to 154350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,095 DEBUG chr15: Signal quantile: 0.995. signal threshold: 28. Best RMSEA: 0.036 2025-01-31 09:55:23,103 DEBUG Processing 170/686 atomic regions from SNP 50840 to 51440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,246 DEBUG Processing 177/730 atomic regions from SNP 52976 to 53577 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,330 DEBUG Processing 514/734 atomic regions from SNP 154050 to 154650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,334 DEBUG Processing 171/686 atomic regions from SNP 51140 to 51740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,544 DEBUG Processing 178/730 atomic regions from SNP 53277 to 53878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,621 DEBUG Processing 172/686 atomic regions from SNP 51440 to 52040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,655 DEBUG Processing 515/734 atomic regions from SNP 154350 to 154950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,829 DEBUG Processing 179/730 atomic regions from SNP 53578 to 54179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,919 DEBUG Processing 173/686 atomic regions from SNP 51740 to 52340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,934 DEBUG Processing 516/734 atomic regions from SNP 154650 to 155250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,131 DEBUG Processing 180/730 atomic regions from SNP 53879 to 54480 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,309 DEBUG Processing 517/734 atomic regions from SNP 154950 to 155550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,312 DEBUG Processing 174/686 atomic regions from SNP 52040 to 52640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,383 DEBUG Processing 181/730 atomic regions from SNP 54180 to 54781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,608 DEBUG Processing 175/686 atomic regions from SNP 52340 to 52940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,614 DEBUG Processing 518/734 atomic regions from SNP 155250 to 155850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,661 DEBUG Processing 182/730 atomic regions from SNP 54481 to 55082 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,741 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:55:24,872 DEBUG Processing 176/686 atomic regions from SNP 52640 to 53240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,888 DEBUG Processing 519/734 atomic regions from SNP 155550 to 156150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,898 DEBUG Processing 183/730 atomic regions from SNP 54782 to 55383 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,101 DEBUG Processing 177/686 atomic regions from SNP 52940 to 53540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,108 DEBUG Processing 184/730 atomic regions from SNP 55083 to 55684 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,133 DEBUG Processing 520/734 atomic regions from SNP 155850 to 156450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,317 DEBUG Processing 178/686 atomic regions from SNP 53240 to 53840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,319 DEBUG Processing 185/730 atomic regions from SNP 55384 to 55985 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,373 DEBUG chr15 total SNP count: 182396 2025-01-31 09:55:25,374 DEBUG chr15 length: 104043685 2025-01-31 09:55:25,374 DEBUG ----------------------------------------- 2025-01-31 09:55:25,374 INFO Processing SNPs in chr15 2025-01-31 09:55:25,381 DEBUG Processing 521/734 atomic regions from SNP 156150 to 156750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,534 DEBUG Processing 186/730 atomic regions from SNP 55685 to 56286 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,554 DEBUG Processing 179/686 atomic regions from SNP 53540 to 54140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,560 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 182396)] 2025-01-31 09:55:25,619 DEBUG Processing 522/734 atomic regions from SNP 156450 to 157050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,686 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:25,754 DEBUG Processing 187/730 atomic regions from SNP 55986 to 56587 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,801 DEBUG Processing 180/686 atomic regions from SNP 53840 to 54440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,852 DEBUG Processing 523/734 atomic regions from SNP 156750 to 157350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,968 DEBUG Processing 188/730 atomic regions from SNP 56287 to 56888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,063 DEBUG Processing 181/686 atomic regions from SNP 54140 to 54740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,107 DEBUG Processing 524/734 atomic regions from SNP 157050 to 157650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,191 DEBUG Processing 189/730 atomic regions from SNP 56588 to 57189 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,300 DEBUG Processing 182/686 atomic regions from SNP 54440 to 55040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,339 DEBUG Processing 525/734 atomic regions from SNP 157350 to 157950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,410 DEBUG Processing 190/730 atomic regions from SNP 56889 to 57490 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,528 DEBUG Processing 183/686 atomic regions from SNP 54740 to 55340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,575 DEBUG Processing 526/734 atomic regions from SNP 157650 to 158250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,629 DEBUG Processing 191/730 atomic regions from SNP 57190 to 57791 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,798 DEBUG Processing 184/686 atomic regions from SNP 55040 to 55640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,864 DEBUG Processing 527/734 atomic regions from SNP 157950 to 158550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,889 DEBUG Processing 192/730 atomic regions from SNP 57491 to 58092 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,028 DEBUG Processing 185/686 atomic regions from SNP 55340 to 55940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,100 DEBUG Processing 193/730 atomic regions from SNP 57792 to 58393 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,103 DEBUG Processing 528/734 atomic regions from SNP 158250 to 158850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,249 DEBUG Processing 186/686 atomic regions from SNP 55640 to 56240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,320 DEBUG Processing 194/730 atomic regions from SNP 58093 to 58694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,342 DEBUG Processing 529/734 atomic regions from SNP 158550 to 159150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,472 DEBUG Processing 187/686 atomic regions from SNP 55940 to 56540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,539 DEBUG Processing 195/730 atomic regions from SNP 58394 to 58995 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,577 DEBUG Processing 530/734 atomic regions from SNP 158850 to 159450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,695 DEBUG Processing 188/686 atomic regions from SNP 56240 to 56840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,751 DEBUG Processing 196/730 atomic regions from SNP 58695 to 59296 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,801 DEBUG Processing 531/734 atomic regions from SNP 159150 to 159750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,929 DEBUG Processing 189/686 atomic regions from SNP 56540 to 57140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,961 DEBUG Processing 197/730 atomic regions from SNP 58996 to 59597 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,028 DEBUG Processing 532/734 atomic regions from SNP 159450 to 160050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,170 DEBUG Processing 198/730 atomic regions from SNP 59297 to 59898 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,179 DEBUG Processing 190/686 atomic regions from SNP 56840 to 57440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,257 DEBUG Processing 533/734 atomic regions from SNP 159750 to 160350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,378 DEBUG Processing 199/730 atomic regions from SNP 59598 to 60199 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,419 DEBUG Processing 191/686 atomic regions from SNP 57140 to 57740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,480 DEBUG Processing 534/734 atomic regions from SNP 160050 to 160650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,588 DEBUG Processing 200/730 atomic regions from SNP 59899 to 60500 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,664 DEBUG Processing 192/686 atomic regions from SNP 57440 to 58040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,714 DEBUG Processing 535/734 atomic regions from SNP 160350 to 160950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,801 DEBUG Processing 201/730 atomic regions from SNP 60200 to 60801 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,910 DEBUG Processing 193/686 atomic regions from SNP 57740 to 58340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,002 DEBUG Processing 536/734 atomic regions from SNP 160650 to 161250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,063 DEBUG Processing 202/730 atomic regions from SNP 60501 to 61102 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,147 DEBUG Processing 194/686 atomic regions from SNP 58040 to 58640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,246 DEBUG Processing 537/734 atomic regions from SNP 160950 to 161550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,279 DEBUG Processing 203/730 atomic regions from SNP 60802 to 61403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,377 DEBUG Processing 195/686 atomic regions from SNP 58340 to 58940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,504 DEBUG Processing 204/730 atomic regions from SNP 61103 to 61704 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,508 DEBUG Processing 538/734 atomic regions from SNP 161250 to 161850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,604 DEBUG Processing 196/686 atomic regions from SNP 58640 to 59240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,771 DEBUG Processing 539/734 atomic regions from SNP 161550 to 162150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,780 DEBUG Processing 205/730 atomic regions from SNP 61404 to 62005 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,822 DEBUG Processing 197/686 atomic regions from SNP 58940 to 59540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,003 DEBUG Processing 206/730 atomic regions from SNP 61705 to 62306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,003 DEBUG Processing 540/734 atomic regions from SNP 161850 to 162450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,035 DEBUG Processing 198/686 atomic regions from SNP 59240 to 59840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,222 DEBUG Processing 207/730 atomic regions from SNP 62006 to 62607 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,241 DEBUG Processing 541/734 atomic regions from SNP 162150 to 162750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,254 DEBUG Processing 199/686 atomic regions from SNP 59540 to 60140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,462 DEBUG Processing 208/730 atomic regions from SNP 62307 to 62908 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,501 DEBUG Processing 542/734 atomic regions from SNP 162450 to 163050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,507 DEBUG Processing 200/686 atomic regions from SNP 59840 to 60440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,771 DEBUG Processing 209/730 atomic regions from SNP 62608 to 63209 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,781 DEBUG Processing 543/734 atomic regions from SNP 162750 to 163350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,809 DEBUG Processing 201/686 atomic regions from SNP 60140 to 60740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,987 DEBUG Processing 210/730 atomic regions from SNP 62909 to 63510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,023 DEBUG Processing 544/734 atomic regions from SNP 163050 to 163650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,059 DEBUG Processing 202/686 atomic regions from SNP 60440 to 61040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,202 DEBUG Processing 211/730 atomic regions from SNP 63210 to 63811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,267 DEBUG Processing 545/734 atomic regions from SNP 163350 to 163950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,320 DEBUG Processing 203/686 atomic regions from SNP 60740 to 61340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,416 DEBUG Processing 212/730 atomic regions from SNP 63511 to 64112 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,500 DEBUG Processing 546/734 atomic regions from SNP 163650 to 164250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,562 DEBUG Processing 204/686 atomic regions from SNP 61040 to 61640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,632 DEBUG Processing 213/730 atomic regions from SNP 63812 to 64413 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,739 DEBUG Processing 547/734 atomic regions from SNP 163950 to 164550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,789 DEBUG Processing 205/686 atomic regions from SNP 61340 to 61940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,844 DEBUG Processing 214/730 atomic regions from SNP 64113 to 64714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,975 DEBUG Processing 548/734 atomic regions from SNP 164250 to 164850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,018 DEBUG Processing 206/686 atomic regions from SNP 61640 to 62240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,058 DEBUG Processing 215/730 atomic regions from SNP 64414 to 65015 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,208 DEBUG Processing 549/734 atomic regions from SNP 164550 to 165150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,263 DEBUG Processing 207/686 atomic regions from SNP 61940 to 62540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,277 DEBUG Processing 216/730 atomic regions from SNP 64715 to 65316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,440 DEBUG Processing 550/734 atomic regions from SNP 164850 to 165450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,491 DEBUG Processing 217/730 atomic regions from SNP 65016 to 65617 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,511 DEBUG Processing 208/686 atomic regions from SNP 62240 to 62840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,669 DEBUG Processing 551/734 atomic regions from SNP 165150 to 165750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,706 DEBUG Processing 218/730 atomic regions from SNP 65317 to 65918 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,738 DEBUG Processing 209/686 atomic regions from SNP 62540 to 63140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,907 DEBUG Processing 552/734 atomic regions from SNP 165450 to 166050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,921 DEBUG Processing 219/730 atomic regions from SNP 65618 to 66219 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,953 DEBUG Processing 210/686 atomic regions from SNP 62840 to 63440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,141 DEBUG Processing 220/730 atomic regions from SNP 65919 to 66520 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,155 DEBUG Processing 553/734 atomic regions from SNP 165750 to 166350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,178 DEBUG Processing 211/686 atomic regions from SNP 63140 to 63740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,357 DEBUG Processing 221/730 atomic regions from SNP 66220 to 66821 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,391 DEBUG Processing 554/734 atomic regions from SNP 166050 to 166650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,399 DEBUG Processing 212/686 atomic regions from SNP 63440 to 64040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,576 DEBUG Processing 222/730 atomic regions from SNP 66521 to 67122 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,626 DEBUG Processing 213/686 atomic regions from SNP 63740 to 64340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,632 DEBUG Processing 555/734 atomic regions from SNP 166350 to 166950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,795 DEBUG Processing 223/730 atomic regions from SNP 66822 to 67423 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,843 DEBUG Processing 214/686 atomic regions from SNP 64040 to 64640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,868 DEBUG Processing 556/734 atomic regions from SNP 166650 to 167250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,023 DEBUG Processing 224/730 atomic regions from SNP 67123 to 67724 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,079 DEBUG Processing 215/686 atomic regions from SNP 64340 to 64940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,117 DEBUG Processing 557/734 atomic regions from SNP 166950 to 167550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,286 DEBUG Processing 225/730 atomic regions from SNP 67424 to 68025 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,309 DEBUG Processing 216/686 atomic regions from SNP 64640 to 65240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,379 DEBUG Processing 558/734 atomic regions from SNP 167250 to 167850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,510 DEBUG Processing 226/730 atomic regions from SNP 67725 to 68326 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,533 DEBUG Processing 217/686 atomic regions from SNP 64940 to 65540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,628 DEBUG Processing 559/734 atomic regions from SNP 167550 to 168150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,745 DEBUG Processing 227/730 atomic regions from SNP 68026 to 68627 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,760 DEBUG Processing 218/686 atomic regions from SNP 65240 to 65840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,880 DEBUG Processing 560/734 atomic regions from SNP 167850 to 168450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,979 DEBUG Processing 228/730 atomic regions from SNP 68327 to 68928 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,002 DEBUG Processing 219/686 atomic regions from SNP 65540 to 66140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,128 DEBUG Processing 561/734 atomic regions from SNP 168150 to 168750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,208 DEBUG Processing 229/730 atomic regions from SNP 68628 to 69229 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,241 DEBUG Processing 220/686 atomic regions from SNP 65840 to 66440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,391 DEBUG Processing 562/734 atomic regions from SNP 168450 to 169050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,429 DEBUG Processing 230/730 atomic regions from SNP 68929 to 69530 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,483 DEBUG Processing 221/686 atomic regions from SNP 66140 to 66740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,686 DEBUG Processing 563/734 atomic regions from SNP 168750 to 169350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,689 DEBUG Processing 231/730 atomic regions from SNP 69230 to 69831 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,963 DEBUG Processing 222/686 atomic regions from SNP 66440 to 67040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,078 DEBUG Processing 232/730 atomic regions from SNP 69531 to 70132 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,138 DEBUG Processing 564/734 atomic regions from SNP 169050 to 169650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,206 DEBUG Processing 223/686 atomic regions from SNP 66740 to 67340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,311 DEBUG Processing 233/730 atomic regions from SNP 69832 to 70433 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,354 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:55:36,356 WARNING chr16: Best RMSEA: 0.050. Chromosome fit might be poorly approximated. 2025-01-31 09:55:36,356 DEBUG chr16: Signal quantile: 0.995. signal threshold: 19. Best RMSEA: 0.050 2025-01-31 09:55:36,400 DEBUG Processing 565/734 atomic regions from SNP 169350 to 169950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,460 DEBUG Processing 224/686 atomic regions from SNP 67040 to 67640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,575 DEBUG Processing 234/730 atomic regions from SNP 70133 to 70734 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,777 DEBUG Processing 566/734 atomic regions from SNP 169650 to 170250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,845 DEBUG Processing 225/686 atomic regions from SNP 67340 to 67940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,853 DEBUG Processing 235/730 atomic regions from SNP 70434 to 71035 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,043 DEBUG Processing 567/734 atomic regions from SNP 169950 to 170550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,088 DEBUG Processing 226/686 atomic regions from SNP 67640 to 68240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,092 DEBUG Processing 236/730 atomic regions from SNP 70735 to 71336 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,289 DEBUG Processing 568/734 atomic regions from SNP 170250 to 170850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,318 DEBUG Processing 227/686 atomic regions from SNP 67940 to 68540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,321 DEBUG Processing 237/730 atomic regions from SNP 71036 to 71637 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,527 DEBUG Processing 569/734 atomic regions from SNP 170550 to 171150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,537 DEBUG Processing 238/730 atomic regions from SNP 71337 to 71938 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,539 DEBUG Processing 228/686 atomic regions from SNP 68240 to 68840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,764 DEBUG Processing 239/730 atomic regions from SNP 71638 to 72239 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,774 DEBUG Processing 570/734 atomic regions from SNP 170850 to 171450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,776 DEBUG Processing 229/686 atomic regions from SNP 68540 to 69140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,980 DEBUG Processing 240/730 atomic regions from SNP 71939 to 72540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,019 DEBUG Processing 230/686 atomic regions from SNP 68840 to 69440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,032 DEBUG Processing 571/734 atomic regions from SNP 171150 to 171750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,302 DEBUG Processing 241/730 atomic regions from SNP 72240 to 72841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,316 DEBUG Processing 572/734 atomic regions from SNP 171450 to 172050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,328 DEBUG Processing 231/686 atomic regions from SNP 69140 to 69740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,550 DEBUG Processing 242/730 atomic regions from SNP 72541 to 73142 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,575 DEBUG Processing 232/686 atomic regions from SNP 69440 to 70040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,591 DEBUG Processing 573/734 atomic regions from SNP 171750 to 172350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,671 DEBUG chr16 total SNP count: 171269 2025-01-31 09:55:38,671 DEBUG chr16 length: 98207768 2025-01-31 09:55:38,671 DEBUG ----------------------------------------- 2025-01-31 09:55:38,671 INFO Processing SNPs in chr16 2025-01-31 09:55:38,774 DEBUG Processing 243/730 atomic regions from SNP 72842 to 73443 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,802 DEBUG Processing 233/686 atomic regions from SNP 69740 to 70340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,832 DEBUG Processing 574/734 atomic regions from SNP 172050 to 172650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,841 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 171269)] 2025-01-31 09:55:38,957 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:38,986 DEBUG Processing 244/730 atomic regions from SNP 73143 to 73744 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,025 DEBUG Processing 234/686 atomic regions from SNP 70040 to 70640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,067 DEBUG Processing 575/734 atomic regions from SNP 172350 to 172950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,196 DEBUG Processing 245/730 atomic regions from SNP 73444 to 74045 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,251 DEBUG Processing 235/686 atomic regions from SNP 70340 to 70940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,315 DEBUG Processing 576/734 atomic regions from SNP 172650 to 173250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,407 DEBUG Processing 246/730 atomic regions from SNP 73745 to 74346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,488 DEBUG Processing 236/686 atomic regions from SNP 70640 to 71240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,566 DEBUG Processing 577/734 atomic regions from SNP 172950 to 173550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,615 DEBUG Processing 247/730 atomic regions from SNP 74046 to 74647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,727 DEBUG Processing 237/686 atomic regions from SNP 70940 to 71540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,809 DEBUG Processing 578/734 atomic regions from SNP 173250 to 173850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,832 DEBUG Processing 248/730 atomic regions from SNP 74347 to 74948 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,968 DEBUG Processing 238/686 atomic regions from SNP 71240 to 71840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,045 DEBUG Processing 249/730 atomic regions from SNP 74648 to 75249 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,057 DEBUG Processing 579/734 atomic regions from SNP 173550 to 174150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,209 DEBUG Processing 239/686 atomic regions from SNP 71540 to 72140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,252 DEBUG Processing 250/730 atomic regions from SNP 74949 to 75550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,301 DEBUG Processing 580/734 atomic regions from SNP 173850 to 174450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,455 DEBUG Processing 240/686 atomic regions from SNP 71840 to 72440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,464 DEBUG Processing 251/730 atomic regions from SNP 75250 to 75851 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,558 DEBUG Processing 581/734 atomic regions from SNP 174150 to 174750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,674 DEBUG Processing 252/730 atomic regions from SNP 75551 to 76152 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,694 DEBUG Processing 241/686 atomic regions from SNP 72140 to 72740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,818 DEBUG Processing 582/734 atomic regions from SNP 174450 to 175050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,881 DEBUG Processing 253/730 atomic regions from SNP 75852 to 76453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,924 DEBUG Processing 242/686 atomic regions from SNP 72440 to 73040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,071 DEBUG Processing 583/734 atomic regions from SNP 174750 to 175350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,086 DEBUG Processing 254/730 atomic regions from SNP 76153 to 76754 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,156 DEBUG Processing 243/686 atomic regions from SNP 72740 to 73340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,294 DEBUG Processing 255/730 atomic regions from SNP 76454 to 77055 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,320 DEBUG Processing 584/734 atomic regions from SNP 175050 to 175650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,398 DEBUG Processing 244/686 atomic regions from SNP 73040 to 73640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,500 DEBUG Processing 256/730 atomic regions from SNP 76755 to 77356 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,560 DEBUG Processing 585/734 atomic regions from SNP 175350 to 175950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,651 DEBUG Processing 245/686 atomic regions from SNP 73340 to 73940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,717 DEBUG Processing 257/730 atomic regions from SNP 77056 to 77657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,794 DEBUG Processing 586/734 atomic regions from SNP 175650 to 176250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,900 DEBUG Processing 246/686 atomic regions from SNP 73640 to 74240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,946 DEBUG Processing 258/730 atomic regions from SNP 77357 to 77958 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,041 DEBUG Processing 587/734 atomic regions from SNP 175950 to 176550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,139 DEBUG Processing 247/686 atomic regions from SNP 73940 to 74540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,170 DEBUG Processing 259/730 atomic regions from SNP 77658 to 78259 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,290 DEBUG Processing 588/734 atomic regions from SNP 176250 to 176850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,367 DEBUG Processing 248/686 atomic regions from SNP 74240 to 74840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,379 DEBUG Processing 260/730 atomic regions from SNP 77959 to 78560 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,540 DEBUG Processing 589/734 atomic regions from SNP 176550 to 177150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,588 DEBUG Processing 261/730 atomic regions from SNP 78260 to 78861 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,597 DEBUG Processing 249/686 atomic regions from SNP 74540 to 75140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,792 DEBUG Processing 590/734 atomic regions from SNP 176850 to 177450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,797 DEBUG Processing 262/730 atomic regions from SNP 78561 to 79162 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,834 DEBUG Processing 250/686 atomic regions from SNP 74840 to 75440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,009 DEBUG Processing 263/730 atomic regions from SNP 78862 to 79463 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,031 DEBUG Processing 591/734 atomic regions from SNP 177150 to 177750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,081 DEBUG Processing 251/686 atomic regions from SNP 75140 to 75740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,218 DEBUG Processing 264/730 atomic regions from SNP 79163 to 79764 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,278 DEBUG Processing 592/734 atomic regions from SNP 177450 to 178050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,310 DEBUG Processing 252/686 atomic regions from SNP 75440 to 76040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,428 DEBUG Processing 265/730 atomic regions from SNP 79464 to 80065 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,534 DEBUG Processing 593/734 atomic regions from SNP 177750 to 178350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,558 DEBUG Processing 253/686 atomic regions from SNP 75740 to 76340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,635 DEBUG Processing 266/730 atomic regions from SNP 79765 to 80366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,765 DEBUG Processing 594/734 atomic regions from SNP 178050 to 178650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,807 DEBUG Processing 254/686 atomic regions from SNP 76040 to 76640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,846 DEBUG Processing 267/730 atomic regions from SNP 80066 to 80667 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,998 DEBUG Processing 595/734 atomic regions from SNP 178350 to 178950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,038 DEBUG Processing 255/686 atomic regions from SNP 76340 to 76940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,059 DEBUG Processing 268/730 atomic regions from SNP 80367 to 80968 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,227 DEBUG Processing 596/734 atomic regions from SNP 178650 to 179250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,263 DEBUG Processing 256/686 atomic regions from SNP 76640 to 77240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,276 DEBUG Processing 269/730 atomic regions from SNP 80668 to 81269 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,460 DEBUG Processing 597/734 atomic regions from SNP 178950 to 179550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,491 DEBUG Processing 270/730 atomic regions from SNP 80969 to 81570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,493 DEBUG Processing 257/686 atomic regions from SNP 76940 to 77540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,686 DEBUG Processing 598/734 atomic regions from SNP 179250 to 179850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,708 DEBUG Processing 271/730 atomic regions from SNP 81270 to 81871 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,719 DEBUG Processing 258/686 atomic regions from SNP 77240 to 77840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,908 DEBUG Processing 599/734 atomic regions from SNP 179550 to 180150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,921 DEBUG Processing 272/730 atomic regions from SNP 81571 to 82172 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,956 DEBUG Processing 259/686 atomic regions from SNP 77540 to 78140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,140 DEBUG Processing 273/730 atomic regions from SNP 81872 to 82473 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,146 DEBUG Processing 600/734 atomic regions from SNP 179850 to 180450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,206 DEBUG Processing 260/686 atomic regions from SNP 77840 to 78440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,382 DEBUG Processing 601/734 atomic regions from SNP 180150 to 180750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,383 DEBUG Processing 274/730 atomic regions from SNP 82173 to 82774 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,464 DEBUG Processing 261/686 atomic regions from SNP 78140 to 78740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,543 DEBUG Segmenting atomic regions: 2025-01-31 09:55:45,607 DEBUG Processing 275/730 atomic regions from SNP 82474 to 83075 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,630 DEBUG Processing 1/673 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,639 DEBUG Processing 602/734 atomic regions from SNP 180450 to 181050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,711 DEBUG Processing 262/686 atomic regions from SNP 78440 to 79040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,824 DEBUG Processing 276/730 atomic regions from SNP 82775 to 83376 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,848 DEBUG Processing 2/673 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,903 DEBUG Processing 603/734 atomic regions from SNP 180750 to 181350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,941 DEBUG Processing 263/686 atomic regions from SNP 78740 to 79340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,041 DEBUG Processing 277/730 atomic regions from SNP 83076 to 83677 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,072 DEBUG Processing 3/673 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,159 DEBUG Processing 604/734 atomic regions from SNP 181050 to 181650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,167 DEBUG Processing 264/686 atomic regions from SNP 79040 to 79640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,264 DEBUG Processing 278/730 atomic regions from SNP 83377 to 83978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,297 DEBUG Processing 4/673 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,404 DEBUG Processing 265/686 atomic regions from SNP 79340 to 79940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,432 DEBUG Processing 605/734 atomic regions from SNP 181350 to 181950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,514 DEBUG Processing 279/730 atomic regions from SNP 83678 to 84278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,532 DEBUG Processing 5/673 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,628 DEBUG Processing 266/686 atomic regions from SNP 79640 to 80240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,687 DEBUG Processing 606/734 atomic regions from SNP 181650 to 182250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,743 DEBUG Processing 280/730 atomic regions from SNP 83978 to 84578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,764 DEBUG Processing 6/673 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,861 DEBUG Processing 267/686 atomic regions from SNP 79940 to 80540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,946 DEBUG Processing 607/734 atomic regions from SNP 181950 to 182550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,981 DEBUG Processing 281/730 atomic regions from SNP 84278 to 84878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,004 DEBUG Processing 7/673 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,124 DEBUG Processing 268/686 atomic regions from SNP 80240 to 80840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,225 DEBUG Processing 608/734 atomic regions from SNP 182250 to 182850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,229 DEBUG Processing 282/730 atomic regions from SNP 84578 to 85178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,239 DEBUG Processing 8/673 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,391 DEBUG Processing 269/686 atomic regions from SNP 80540 to 81140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,506 DEBUG Processing 609/734 atomic regions from SNP 182550 to 183150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,519 DEBUG Processing 9/673 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,522 DEBUG Processing 283/730 atomic regions from SNP 84878 to 85478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,680 DEBUG Processing 270/686 atomic regions from SNP 80840 to 81440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,748 DEBUG Processing 10/673 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,749 DEBUG Processing 284/730 atomic regions from SNP 85178 to 85778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,755 DEBUG Processing 610/734 atomic regions from SNP 182850 to 183450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,933 DEBUG Processing 271/686 atomic regions from SNP 81140 to 81740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,963 DEBUG Processing 285/730 atomic regions from SNP 85478 to 86078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,980 DEBUG Processing 11/673 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,989 DEBUG Processing 611/734 atomic regions from SNP 183150 to 183750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,171 DEBUG Processing 286/730 atomic regions from SNP 85778 to 86378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,186 DEBUG Processing 272/686 atomic regions from SNP 81440 to 82040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,206 DEBUG Processing 12/673 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,217 DEBUG Processing 612/734 atomic regions from SNP 183450 to 184050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,383 DEBUG Processing 287/730 atomic regions from SNP 86078 to 86678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,395 DEBUG Segmenting atomic regions: 2025-01-31 09:55:48,413 DEBUG Processing 13/673 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,438 DEBUG Processing 273/686 atomic regions from SNP 81740 to 82340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,449 DEBUG Processing 613/734 atomic regions from SNP 183750 to 184350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,475 DEBUG Processing 1/606 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,598 DEBUG Processing 288/730 atomic regions from SNP 86378 to 86978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,640 DEBUG Processing 14/673 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,688 DEBUG Processing 2/606 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,692 DEBUG Processing 614/734 atomic regions from SNP 184050 to 184650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,701 DEBUG Processing 274/686 atomic regions from SNP 82040 to 82640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,829 DEBUG Processing 289/730 atomic regions from SNP 86678 to 87278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,857 DEBUG Processing 15/673 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,887 DEBUG Processing 3/606 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,926 DEBUG Processing 615/734 atomic regions from SNP 184350 to 184950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,956 DEBUG Processing 275/686 atomic regions from SNP 82340 to 82940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,070 DEBUG Processing 290/730 atomic regions from SNP 86978 to 87578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,077 DEBUG Processing 16/673 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,088 DEBUG Processing 4/606 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,168 DEBUG Processing 616/734 atomic regions from SNP 184650 to 185250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,231 DEBUG Processing 276/686 atomic regions from SNP 82640 to 83240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,327 DEBUG Processing 17/673 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,329 DEBUG Processing 5/606 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,344 DEBUG Processing 291/730 atomic regions from SNP 87278 to 87878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,400 DEBUG Processing 617/734 atomic regions from SNP 184950 to 185550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,473 DEBUG Processing 277/686 atomic regions from SNP 82940 to 83540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,540 DEBUG Processing 6/606 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,541 DEBUG Processing 18/673 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,590 DEBUG Processing 292/730 atomic regions from SNP 87578 to 88178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,636 DEBUG Processing 618/734 atomic regions from SNP 185250 to 185850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,749 DEBUG Processing 278/686 atomic regions from SNP 83240 to 83840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,755 DEBUG Processing 7/606 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,776 DEBUG Processing 19/673 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,851 DEBUG Processing 293/730 atomic regions from SNP 87878 to 88478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,895 DEBUG Processing 619/734 atomic regions from SNP 185550 to 186150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,990 DEBUG Processing 8/606 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,025 DEBUG Processing 20/673 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,033 DEBUG Processing 279/686 atomic regions from SNP 83540 to 84140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,135 DEBUG Processing 294/730 atomic regions from SNP 88178 to 88778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,283 DEBUG Processing 620/734 atomic regions from SNP 185850 to 186450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,301 DEBUG Processing 9/606 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,368 DEBUG Processing 21/673 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,368 DEBUG Processing 280/686 atomic regions from SNP 83840 to 84440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,465 DEBUG Processing 295/730 atomic regions from SNP 88478 to 89078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,688 DEBUG Processing 621/734 atomic regions from SNP 186150 to 186750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,701 DEBUG Processing 10/606 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,764 DEBUG Processing 22/673 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,775 DEBUG Processing 281/686 atomic regions from SNP 84140 to 84740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,875 DEBUG Processing 296/730 atomic regions from SNP 88778 to 89378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,054 DEBUG Processing 11/606 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,149 DEBUG Processing 23/673 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,157 DEBUG Processing 622/734 atomic regions from SNP 186450 to 187050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,187 DEBUG Processing 282/686 atomic regions from SNP 84440 to 85040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,335 DEBUG Processing 297/730 atomic regions from SNP 89078 to 89678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,364 DEBUG Processing 12/606 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,442 DEBUG Processing 24/673 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,452 DEBUG Processing 623/734 atomic regions from SNP 186750 to 187350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,500 DEBUG Processing 283/686 atomic regions from SNP 84740 to 85340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,594 DEBUG Processing 298/730 atomic regions from SNP 89378 to 89978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,623 DEBUG Processing 13/606 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,670 DEBUG Processing 25/673 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,731 DEBUG Processing 624/734 atomic regions from SNP 187050 to 187650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,770 DEBUG Processing 284/686 atomic regions from SNP 85040 to 85640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,857 DEBUG Processing 299/730 atomic regions from SNP 89678 to 90278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,859 DEBUG Processing 14/606 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,939 DEBUG Processing 26/673 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,034 DEBUG Processing 285/686 atomic regions from SNP 85340 to 85940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,127 DEBUG Processing 625/734 atomic regions from SNP 187350 to 187950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:52,170 DEBUG Processing 15/606 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,194 DEBUG Processing 300/730 atomic regions from SNP 89978 to 90578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,250 DEBUG Processing 27/673 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,359 DEBUG Processing 286/686 atomic regions from SNP 85640 to 86240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,509 DEBUG Processing 16/606 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,560 DEBUG Processing 301/730 atomic regions from SNP 90278 to 90878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,568 DEBUG Processing 626/734 atomic regions from SNP 187650 to 188250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:52,592 DEBUG Processing 28/673 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,825 DEBUG Processing 287/686 atomic regions from SNP 85940 to 86540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,837 DEBUG Processing 17/606 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,974 DEBUG Processing 302/730 atomic regions from SNP 90578 to 91178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,011 DEBUG Processing 29/673 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,019 DEBUG Processing 627/734 atomic regions from SNP 187950 to 188550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,196 DEBUG Processing 18/606 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,268 DEBUG Processing 288/686 atomic regions from SNP 86240 to 86840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,397 DEBUG Processing 303/730 atomic regions from SNP 90878 to 91478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,398 DEBUG Processing 30/673 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,432 DEBUG Processing 628/734 atomic regions from SNP 188250 to 188850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,531 DEBUG Processing 19/606 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,690 DEBUG Processing 289/686 atomic regions from SNP 86540 to 87140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,746 DEBUG Processing 31/673 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,786 DEBUG Processing 304/730 atomic regions from SNP 91178 to 91778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,817 DEBUG Processing 20/606 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,826 DEBUG Processing 629/734 atomic regions from SNP 188550 to 189150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,929 DEBUG Processing 290/686 atomic regions from SNP 86840 to 87440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,964 DEBUG Processing 32/673 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,009 DEBUG Processing 305/730 atomic regions from SNP 91478 to 92078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,038 DEBUG Processing 21/606 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,072 DEBUG Processing 630/734 atomic regions from SNP 188850 to 189450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,173 DEBUG Processing 291/686 atomic regions from SNP 87140 to 87740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,197 DEBUG Processing 33/673 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,258 DEBUG Processing 22/606 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,258 DEBUG Processing 306/730 atomic regions from SNP 91778 to 92378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,335 DEBUG Processing 631/734 atomic regions from SNP 189150 to 189750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,408 DEBUG Processing 292/686 atomic regions from SNP 87440 to 88040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,442 DEBUG Processing 34/673 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,474 DEBUG Processing 23/606 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,494 DEBUG Processing 307/730 atomic regions from SNP 92078 to 92678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,624 DEBUG Processing 632/734 atomic regions from SNP 189450 to 190050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,723 DEBUG Processing 293/686 atomic regions from SNP 87740 to 88340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,756 DEBUG Processing 35/673 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,791 DEBUG Processing 308/730 atomic regions from SNP 92378 to 92978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,810 DEBUG Processing 24/606 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,976 DEBUG Processing 633/734 atomic regions from SNP 189750 to 190350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,979 DEBUG Processing 294/686 atomic regions from SNP 88040 to 88640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,013 DEBUG Processing 36/673 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,021 DEBUG Processing 309/730 atomic regions from SNP 92678 to 93278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,039 DEBUG Processing 25/606 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,233 DEBUG Processing 295/686 atomic regions from SNP 88340 to 88940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,233 DEBUG Processing 37/673 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,235 DEBUG Processing 26/606 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,245 DEBUG Processing 310/730 atomic regions from SNP 92978 to 93578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,256 DEBUG Processing 634/734 atomic regions from SNP 190050 to 190650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,497 DEBUG Processing 27/606 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,498 DEBUG Processing 38/673 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,538 DEBUG Processing 296/686 atomic regions from SNP 88640 to 89240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,550 DEBUG Processing 311/730 atomic regions from SNP 93278 to 93878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,569 DEBUG Processing 635/734 atomic regions from SNP 190350 to 190950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,723 DEBUG Processing 28/606 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,733 DEBUG Processing 39/673 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,780 DEBUG Processing 297/686 atomic regions from SNP 88940 to 89540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,800 DEBUG Processing 312/730 atomic regions from SNP 93578 to 94178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,845 DEBUG Processing 636/734 atomic regions from SNP 190650 to 191250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,917 DEBUG Processing 29/606 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,932 DEBUG Processing 40/673 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,996 DEBUG Processing 298/686 atomic regions from SNP 89240 to 89840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,015 DEBUG Processing 313/730 atomic regions from SNP 93878 to 94478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,105 DEBUG Processing 637/734 atomic regions from SNP 190950 to 191550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,121 DEBUG Processing 30/606 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,128 DEBUG Processing 41/673 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,215 DEBUG Processing 299/686 atomic regions from SNP 89540 to 90140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,237 DEBUG Processing 314/730 atomic regions from SNP 94178 to 94778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,327 DEBUG Processing 31/606 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,336 DEBUG Processing 42/673 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,375 DEBUG Processing 638/734 atomic regions from SNP 191250 to 191850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,438 DEBUG Processing 300/686 atomic regions from SNP 89840 to 90440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,474 DEBUG Processing 315/730 atomic regions from SNP 94478 to 95078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,520 DEBUG Processing 32/606 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,535 DEBUG Processing 43/673 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,638 DEBUG Processing 639/734 atomic regions from SNP 191550 to 192150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,656 DEBUG Processing 301/686 atomic regions from SNP 90140 to 90740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,677 DEBUG Processing 316/730 atomic regions from SNP 94778 to 95378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,723 DEBUG Processing 33/606 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,728 DEBUG Processing 44/673 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,881 DEBUG Processing 317/730 atomic regions from SNP 95078 to 95678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,888 DEBUG Processing 302/686 atomic regions from SNP 90440 to 91040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,899 DEBUG Processing 640/734 atomic regions from SNP 191850 to 192450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,925 DEBUG Processing 45/673 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,929 DEBUG Processing 34/606 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,088 DEBUG Processing 318/730 atomic regions from SNP 95378 to 95978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,125 DEBUG Processing 46/673 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,129 DEBUG Processing 35/606 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,132 DEBUG Processing 303/686 atomic regions from SNP 90740 to 91340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,154 DEBUG Processing 641/734 atomic regions from SNP 192150 to 192750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,296 DEBUG Processing 319/730 atomic regions from SNP 95678 to 96278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,324 DEBUG Processing 47/673 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,349 DEBUG Processing 36/606 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,368 DEBUG Processing 304/686 atomic regions from SNP 91040 to 91640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,415 DEBUG Processing 642/734 atomic regions from SNP 192450 to 193050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,500 DEBUG Processing 320/730 atomic regions from SNP 95978 to 96578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,519 DEBUG Processing 48/673 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,538 DEBUG Processing 37/606 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,613 DEBUG Processing 305/686 atomic regions from SNP 91340 to 91940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,662 DEBUG Processing 643/734 atomic regions from SNP 192750 to 193350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,704 DEBUG Processing 321/730 atomic regions from SNP 96278 to 96878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,715 DEBUG Processing 49/673 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,729 DEBUG Processing 38/606 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,874 DEBUG Processing 306/686 atomic regions from SNP 91640 to 92240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,900 DEBUG Processing 644/734 atomic regions from SNP 193050 to 193650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,920 DEBUG Processing 322/730 atomic regions from SNP 96578 to 97178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,923 DEBUG Processing 50/673 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,927 DEBUG Processing 39/606 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,122 DEBUG Processing 40/606 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,125 DEBUG Processing 51/673 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,128 DEBUG Processing 307/686 atomic regions from SNP 91940 to 92540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,131 DEBUG Processing 645/734 atomic regions from SNP 193350 to 193950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,131 DEBUG Processing 323/730 atomic regions from SNP 96878 to 97478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,318 DEBUG Processing 41/606 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,330 DEBUG Processing 52/673 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,344 DEBUG Processing 324/730 atomic regions from SNP 97178 to 97778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,371 DEBUG Processing 646/734 atomic regions from SNP 193650 to 194250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,376 DEBUG Processing 308/686 atomic regions from SNP 92240 to 92840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,508 DEBUG Processing 42/606 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,532 DEBUG Processing 53/673 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,553 DEBUG Processing 325/730 atomic regions from SNP 97478 to 98078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,624 DEBUG Processing 647/734 atomic regions from SNP 193950 to 194550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,643 DEBUG Processing 309/686 atomic regions from SNP 92540 to 93140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,697 DEBUG Processing 43/606 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,731 DEBUG Processing 54/673 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,762 DEBUG Processing 326/730 atomic regions from SNP 97778 to 98378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,866 DEBUG Processing 648/734 atomic regions from SNP 194250 to 194850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,887 DEBUG Processing 44/606 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,898 DEBUG Processing 310/686 atomic regions from SNP 92840 to 93440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,930 DEBUG Processing 55/673 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,972 DEBUG Processing 327/730 atomic regions from SNP 98078 to 98678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,081 DEBUG Processing 45/606 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,117 DEBUG Processing 649/734 atomic regions from SNP 194550 to 195150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,129 DEBUG Processing 56/673 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,158 DEBUG Processing 311/686 atomic regions from SNP 93140 to 93740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,200 DEBUG Processing 328/730 atomic regions from SNP 98378 to 98978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,274 DEBUG Processing 46/606 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,351 DEBUG Processing 57/673 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,381 DEBUG Processing 650/734 atomic regions from SNP 194850 to 195450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,428 DEBUG Processing 312/686 atomic regions from SNP 93440 to 94040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,443 DEBUG Processing 329/730 atomic regions from SNP 98678 to 99278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,504 DEBUG Processing 47/606 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,573 DEBUG Processing 58/673 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,630 DEBUG Processing 651/734 atomic regions from SNP 195150 to 195750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,662 DEBUG Processing 330/730 atomic regions from SNP 98978 to 99578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,672 DEBUG Processing 313/686 atomic regions from SNP 93740 to 94340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,691 DEBUG Processing 48/606 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,771 DEBUG Processing 59/673 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,880 DEBUG Processing 49/606 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,880 DEBUG Processing 331/730 atomic regions from SNP 99278 to 99878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,888 DEBUG Processing 652/734 atomic regions from SNP 195450 to 196050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,904 DEBUG Processing 314/686 atomic regions from SNP 94040 to 94640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,969 DEBUG Processing 60/673 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,069 DEBUG Processing 50/606 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,110 DEBUG Processing 332/730 atomic regions from SNP 99578 to 100178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,140 DEBUG Processing 653/734 atomic regions from SNP 195750 to 196350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,144 DEBUG Processing 315/686 atomic regions from SNP 94340 to 94940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,172 DEBUG Processing 61/673 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,253 DEBUG Processing 51/606 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,330 DEBUG Processing 333/730 atomic regions from SNP 99878 to 100478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,370 DEBUG Processing 62/673 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,371 DEBUG Processing 316/686 atomic regions from SNP 94640 to 95240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,386 DEBUG Processing 654/734 atomic regions from SNP 196050 to 196650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,439 DEBUG Processing 52/606 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,506 DEBUG Segmenting atomic regions: 2025-01-31 09:56:00,535 DEBUG Processing 334/730 atomic regions from SNP 100178 to 100778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,569 DEBUG Processing 63/673 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,580 DEBUG Processing 1/569 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,598 DEBUG Processing 317/686 atomic regions from SNP 94940 to 95540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,626 DEBUG Processing 655/734 atomic regions from SNP 196350 to 196950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,638 DEBUG Processing 53/606 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,736 DEBUG Processing 335/730 atomic regions from SNP 100478 to 101078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,765 DEBUG Processing 64/673 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,794 DEBUG Processing 2/569 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,834 DEBUG Processing 318/686 atomic regions from SNP 95240 to 95840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,852 DEBUG Processing 54/606 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,881 DEBUG Processing 656/734 atomic regions from SNP 196650 to 197250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,967 DEBUG Processing 65/673 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,970 DEBUG Processing 336/730 atomic regions from SNP 100778 to 101378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,023 DEBUG Processing 3/569 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,075 DEBUG Processing 55/606 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,076 DEBUG Processing 319/686 atomic regions from SNP 95540 to 96140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,112 DEBUG Processing 657/734 atomic regions from SNP 196950 to 197550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,168 DEBUG Processing 66/673 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,207 DEBUG Processing 337/730 atomic regions from SNP 101078 to 101678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,266 DEBUG Processing 4/569 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,319 DEBUG Processing 56/606 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,333 DEBUG Processing 320/686 atomic regions from SNP 95840 to 96440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,423 DEBUG Processing 658/734 atomic regions from SNP 197250 to 197850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,444 DEBUG Processing 67/673 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,525 DEBUG Processing 5/569 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,538 DEBUG Processing 338/730 atomic regions from SNP 101378 to 101978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,548 DEBUG Processing 57/606 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,584 DEBUG Processing 321/686 atomic regions from SNP 96140 to 96740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,638 DEBUG Processing 68/673 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,651 DEBUG Processing 659/734 atomic regions from SNP 197550 to 198150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,750 DEBUG Processing 6/569 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,753 DEBUG Processing 58/606 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,754 DEBUG Processing 339/730 atomic regions from SNP 101678 to 102278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,807 DEBUG Processing 322/686 atomic regions from SNP 96440 to 97040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,834 DEBUG Processing 69/673 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,879 DEBUG Processing 660/734 atomic regions from SNP 197850 to 198450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,956 DEBUG Processing 59/606 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,970 DEBUG Processing 340/730 atomic regions from SNP 101978 to 102578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,984 DEBUG Processing 7/569 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,023 DEBUG Processing 323/686 atomic regions from SNP 96740 to 97340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,031 DEBUG Processing 70/673 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,098 DEBUG Processing 661/734 atomic regions from SNP 198150 to 198750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,143 DEBUG Processing 60/606 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,189 DEBUG Processing 341/730 atomic regions from SNP 102278 to 102878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,223 DEBUG Processing 8/569 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,229 DEBUG Processing 71/673 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,242 DEBUG Processing 324/686 atomic regions from SNP 97040 to 97640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,321 DEBUG Processing 662/734 atomic regions from SNP 198450 to 199050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,325 DEBUG Processing 61/606 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,421 DEBUG Processing 342/730 atomic regions from SNP 102578 to 103178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,430 DEBUG Processing 72/673 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,453 DEBUG Processing 9/569 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,469 DEBUG Processing 325/686 atomic regions from SNP 97340 to 97940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,509 DEBUG Processing 62/606 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,546 DEBUG Processing 663/734 atomic regions from SNP 198750 to 199350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,636 DEBUG Processing 73/673 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,659 DEBUG Processing 343/730 atomic regions from SNP 102878 to 103478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,694 DEBUG Processing 10/569 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,698 DEBUG Processing 326/686 atomic regions from SNP 97640 to 98240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,701 DEBUG Processing 63/606 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,771 DEBUG Processing 664/734 atomic regions from SNP 199050 to 199650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,834 DEBUG Processing 74/673 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,889 DEBUG Processing 64/606 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,903 DEBUG Processing 344/730 atomic regions from SNP 103178 to 103778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,922 DEBUG Processing 11/569 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,928 DEBUG Processing 327/686 atomic regions from SNP 97940 to 98540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,999 DEBUG Processing 665/734 atomic regions from SNP 199350 to 199950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,032 DEBUG Processing 75/673 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,080 DEBUG Processing 65/606 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,136 DEBUG Processing 345/730 atomic regions from SNP 103478 to 104078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,154 DEBUG Processing 12/569 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,176 DEBUG Processing 328/686 atomic regions from SNP 98240 to 98840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,224 DEBUG Processing 666/734 atomic regions from SNP 199650 to 200250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,230 DEBUG Processing 76/673 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,268 DEBUG Processing 66/606 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,367 DEBUG Processing 346/730 atomic regions from SNP 103778 to 104378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,374 DEBUG Processing 13/569 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,427 DEBUG Processing 329/686 atomic regions from SNP 98540 to 99140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,432 DEBUG Processing 77/673 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,455 DEBUG Processing 667/734 atomic regions from SNP 199950 to 200550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,464 DEBUG Processing 67/606 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,656 DEBUG Processing 14/569 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,670 DEBUG Processing 347/730 atomic regions from SNP 104078 to 104678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,681 DEBUG Processing 78/673 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,706 DEBUG Processing 68/606 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,748 DEBUG Processing 668/734 atomic regions from SNP 200250 to 200850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,758 DEBUG Processing 330/686 atomic regions from SNP 98840 to 99440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,873 DEBUG Processing 15/569 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,915 DEBUG Processing 69/606 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,915 DEBUG Processing 79/673 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,935 DEBUG Processing 348/730 atomic regions from SNP 104378 to 104978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,985 DEBUG Processing 669/734 atomic regions from SNP 200550 to 201150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,003 DEBUG Processing 331/686 atomic regions from SNP 99140 to 99740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,070 DEBUG Processing 16/569 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,108 DEBUG Processing 70/606 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,117 DEBUG Processing 80/673 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,165 DEBUG Processing 349/730 atomic regions from SNP 104678 to 105278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,210 DEBUG Processing 670/734 atomic regions from SNP 200850 to 201450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,235 DEBUG Processing 332/686 atomic regions from SNP 99440 to 100040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,271 DEBUG Processing 17/569 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,298 DEBUG Processing 71/606 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,324 DEBUG Processing 81/673 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,395 DEBUG Processing 350/730 atomic regions from SNP 104978 to 105578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,437 DEBUG Processing 671/734 atomic regions from SNP 201150 to 201750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,474 DEBUG Processing 333/686 atomic regions from SNP 99740 to 100340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,476 DEBUG Processing 18/569 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,490 DEBUG Processing 72/606 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,538 DEBUG Processing 82/673 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,613 DEBUG Processing 351/730 atomic regions from SNP 105278 to 105878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,682 DEBUG Processing 73/606 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,685 DEBUG Processing 672/734 atomic regions from SNP 201450 to 202050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,690 DEBUG Processing 19/569 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,715 DEBUG Processing 334/686 atomic regions from SNP 100040 to 100640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,755 DEBUG Processing 83/673 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,829 DEBUG Processing 352/730 atomic regions from SNP 105578 to 106178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,875 DEBUG Processing 74/606 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,898 DEBUG Processing 20/569 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,922 DEBUG Processing 673/734 atomic regions from SNP 201750 to 202350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,947 DEBUG Processing 335/686 atomic regions from SNP 100340 to 100940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,966 DEBUG Processing 84/673 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,041 DEBUG Processing 353/730 atomic regions from SNP 105878 to 106478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,061 DEBUG Processing 75/606 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,102 DEBUG Processing 21/569 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,170 DEBUG Processing 674/734 atomic regions from SNP 202050 to 202650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,176 DEBUG Processing 85/673 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,179 DEBUG Processing 336/686 atomic regions from SNP 100640 to 101240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,245 DEBUG Processing 354/730 atomic regions from SNP 106178 to 106778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,249 DEBUG Processing 76/606 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,298 DEBUG Processing 22/569 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,385 DEBUG Processing 86/673 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,416 DEBUG Processing 675/734 atomic regions from SNP 202350 to 202950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,419 DEBUG Processing 337/686 atomic regions from SNP 100940 to 101540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,438 DEBUG Processing 77/606 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,450 DEBUG Processing 355/730 atomic regions from SNP 106478 to 107078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,493 DEBUG Processing 23/569 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,605 DEBUG Processing 87/673 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,627 DEBUG Processing 78/606 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,656 DEBUG Processing 356/730 atomic regions from SNP 106778 to 107378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,662 DEBUG Processing 676/734 atomic regions from SNP 202650 to 203250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,665 DEBUG Processing 338/686 atomic regions from SNP 101240 to 101840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,696 DEBUG Processing 24/569 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,812 DEBUG Processing 79/606 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,821 DEBUG Processing 88/673 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,863 DEBUG Processing 357/730 atomic regions from SNP 107078 to 107678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,900 DEBUG Processing 25/569 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,904 DEBUG Processing 677/734 atomic regions from SNP 202950 to 203550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,919 DEBUG Processing 339/686 atomic regions from SNP 101540 to 102140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,999 DEBUG Processing 80/606 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,037 DEBUG Processing 89/673 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,088 DEBUG Processing 358/730 atomic regions from SNP 107378 to 107978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,109 DEBUG Processing 26/569 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,141 DEBUG Processing 678/734 atomic regions from SNP 203250 to 203850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,164 DEBUG Processing 340/686 atomic regions from SNP 101840 to 102440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,187 DEBUG Processing 81/606 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,232 DEBUG Processing 90/673 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,311 DEBUG Processing 27/569 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,326 DEBUG Processing 359/730 atomic regions from SNP 107678 to 108278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,375 DEBUG Processing 82/606 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,383 DEBUG Processing 679/734 atomic regions from SNP 203550 to 204150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,402 DEBUG Processing 341/686 atomic regions from SNP 102140 to 102740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,429 DEBUG Processing 91/673 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,514 DEBUG Processing 28/569 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,538 DEBUG Processing 360/730 atomic regions from SNP 107978 to 108578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,574 DEBUG Processing 83/606 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,621 DEBUG Processing 680/734 atomic regions from SNP 203850 to 204450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,629 DEBUG Processing 92/673 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,643 DEBUG Processing 342/686 atomic regions from SNP 102440 to 103040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,719 DEBUG Processing 29/569 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,745 DEBUG Processing 361/730 atomic regions from SNP 108278 to 108878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,766 DEBUG Processing 84/606 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,829 DEBUG Processing 93/673 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,861 DEBUG Processing 681/734 atomic regions from SNP 204150 to 204750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,885 DEBUG Processing 343/686 atomic regions from SNP 102740 to 103340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,923 DEBUG Processing 30/569 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,950 DEBUG Processing 362/730 atomic regions from SNP 108578 to 109178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,956 DEBUG Processing 85/606 atomic regions from SNP 25284 to 25885 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,027 DEBUG Processing 94/673 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,103 DEBUG Processing 682/734 atomic regions from SNP 204450 to 205050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,125 DEBUG Processing 344/686 atomic regions from SNP 103040 to 103640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,138 DEBUG Processing 31/569 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,147 DEBUG Processing 86/606 atomic regions from SNP 25585 to 26186 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,155 DEBUG Processing 363/730 atomic regions from SNP 108878 to 109478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,223 DEBUG Processing 95/673 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,342 DEBUG Processing 87/606 atomic regions from SNP 25886 to 26487 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,348 DEBUG Processing 683/734 atomic regions from SNP 204750 to 205350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,359 DEBUG Processing 345/686 atomic regions from SNP 103340 to 103940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,364 DEBUG Processing 364/730 atomic regions from SNP 109178 to 109778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,375 DEBUG Processing 32/569 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,423 DEBUG Processing 96/673 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,536 DEBUG Processing 88/606 atomic regions from SNP 26187 to 26788 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,574 DEBUG Processing 365/730 atomic regions from SNP 109478 to 110078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,590 DEBUG Processing 346/686 atomic regions from SNP 103640 to 104240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,591 DEBUG Processing 684/734 atomic regions from SNP 205050 to 205650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,624 DEBUG Processing 97/673 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,626 DEBUG Processing 33/569 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,727 DEBUG Processing 89/606 atomic regions from SNP 26488 to 27089 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,785 DEBUG Processing 366/730 atomic regions from SNP 109778 to 110378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,825 DEBUG Processing 347/686 atomic regions from SNP 103940 to 104540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,832 DEBUG Processing 685/734 atomic regions from SNP 205350 to 205950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,840 DEBUG Processing 98/673 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,870 DEBUG Processing 34/569 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,920 DEBUG Processing 90/606 atomic regions from SNP 26789 to 27390 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,998 DEBUG Processing 367/730 atomic regions from SNP 110078 to 110678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,062 DEBUG Processing 348/686 atomic regions from SNP 104240 to 104840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,065 DEBUG Processing 99/673 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,077 DEBUG Processing 686/734 atomic regions from SNP 205650 to 206250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,098 DEBUG Processing 35/569 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,114 DEBUG Processing 91/606 atomic regions from SNP 27090 to 27691 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,209 DEBUG Processing 368/730 atomic regions from SNP 110378 to 110978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,278 DEBUG Processing 100/673 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,292 DEBUG Processing 349/686 atomic regions from SNP 104540 to 105140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,308 DEBUG Processing 92/606 atomic regions from SNP 27391 to 27992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,312 DEBUG Processing 36/569 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,313 DEBUG Processing 687/734 atomic regions from SNP 205950 to 206550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,418 DEBUG Processing 369/730 atomic regions from SNP 110678 to 111278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,477 DEBUG Processing 101/673 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,498 DEBUG Processing 93/606 atomic regions from SNP 27692 to 28293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,517 DEBUG Processing 350/686 atomic regions from SNP 104840 to 105440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,524 DEBUG Processing 37/569 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,549 DEBUG Processing 688/734 atomic regions from SNP 206250 to 206850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,634 DEBUG Processing 370/730 atomic regions from SNP 110978 to 111578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,678 DEBUG Processing 102/673 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,688 DEBUG Processing 94/606 atomic regions from SNP 27993 to 28594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,737 DEBUG Processing 38/569 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,739 DEBUG Processing 351/686 atomic regions from SNP 105140 to 105740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,786 DEBUG Processing 689/734 atomic regions from SNP 206550 to 207150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,847 DEBUG Processing 371/730 atomic regions from SNP 111278 to 111878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,878 DEBUG Processing 103/673 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,882 DEBUG Processing 95/606 atomic regions from SNP 28294 to 28895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,955 DEBUG Processing 39/569 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,969 DEBUG Processing 352/686 atomic regions from SNP 105440 to 106040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,029 DEBUG Processing 690/734 atomic regions from SNP 206850 to 207450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,057 DEBUG Processing 372/730 atomic regions from SNP 111578 to 112178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,070 DEBUG Processing 96/606 atomic regions from SNP 28595 to 29196 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,106 DEBUG Processing 104/673 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,176 DEBUG Processing 40/569 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,202 DEBUG Processing 353/686 atomic regions from SNP 105740 to 106340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,266 DEBUG Processing 97/606 atomic regions from SNP 28896 to 29497 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,271 DEBUG Processing 691/734 atomic regions from SNP 207150 to 207750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,272 DEBUG Processing 373/730 atomic regions from SNP 111878 to 112478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,343 DEBUG Processing 105/673 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,390 DEBUG Processing 41/569 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,448 DEBUG Processing 354/686 atomic regions from SNP 106040 to 106640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,458 DEBUG Processing 98/606 atomic regions from SNP 29197 to 29798 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,494 DEBUG Processing 374/730 atomic regions from SNP 112178 to 112778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,507 DEBUG Processing 692/734 atomic regions from SNP 207450 to 208050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,566 DEBUG Processing 106/673 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,595 DEBUG Processing 42/569 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,652 DEBUG Processing 99/606 atomic regions from SNP 29498 to 30099 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,694 DEBUG Processing 355/686 atomic regions from SNP 106340 to 106940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,704 DEBUG Processing 375/730 atomic regions from SNP 112478 to 113078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,743 DEBUG Processing 693/734 atomic regions from SNP 207750 to 208350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,795 DEBUG Processing 107/673 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,819 DEBUG Processing 43/569 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,865 DEBUG Processing 100/606 atomic regions from SNP 29799 to 30400 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,398 DEBUG Processing 376/730 atomic regions from SNP 112778 to 113378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,419 DEBUG Processing 356/686 atomic regions from SNP 106640 to 107240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,487 DEBUG Processing 694/734 atomic regions from SNP 208050 to 208650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,517 DEBUG Processing 101/606 atomic regions from SNP 30100 to 30701 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,518 DEBUG Processing 108/673 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,522 DEBUG Processing 44/569 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,600 DEBUG Processing 377/730 atomic regions from SNP 113078 to 113678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,690 DEBUG Processing 357/686 atomic regions from SNP 106940 to 107540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,773 DEBUG Processing 102/606 atomic regions from SNP 30401 to 31002 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,791 DEBUG Processing 109/673 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,796 DEBUG Processing 695/734 atomic regions from SNP 208350 to 208950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,842 DEBUG Processing 45/569 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,869 DEBUG Processing 378/730 atomic regions from SNP 113378 to 113978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,009 DEBUG Processing 358/686 atomic regions from SNP 107240 to 107840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,203 DEBUG Processing 103/606 atomic regions from SNP 30702 to 31303 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,233 DEBUG Processing 110/673 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,271 DEBUG Processing 46/569 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,277 DEBUG Processing 696/734 atomic regions from SNP 208650 to 209250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,283 DEBUG Processing 379/730 atomic regions from SNP 113678 to 114278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,342 DEBUG Processing 359/686 atomic regions from SNP 107540 to 108140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,398 DEBUG Processing 104/606 atomic regions from SNP 31003 to 31604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,451 DEBUG Processing 111/673 atomic regions from SNP 33110 to 33710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,522 DEBUG Processing 380/730 atomic regions from SNP 113978 to 114578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,604 DEBUG Processing 697/734 atomic regions from SNP 208950 to 209550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,615 DEBUG Processing 47/569 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,648 DEBUG Processing 105/606 atomic regions from SNP 31304 to 31905 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,672 DEBUG Processing 360/686 atomic regions from SNP 107840 to 108440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,699 DEBUG Processing 112/673 atomic regions from SNP 33410 to 34010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,729 DEBUG Processing 381/730 atomic regions from SNP 114278 to 114878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,844 DEBUG Processing 106/606 atomic regions from SNP 31605 to 32206 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,848 DEBUG Processing 698/734 atomic regions from SNP 209250 to 209850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,860 DEBUG Processing 48/569 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,905 DEBUG Processing 113/673 atomic regions from SNP 33710 to 34310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,929 DEBUG Processing 361/686 atomic regions from SNP 108140 to 108740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,936 DEBUG Processing 382/730 atomic regions from SNP 114578 to 115178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,038 DEBUG Processing 107/606 atomic regions from SNP 31906 to 32507 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,091 DEBUG Processing 699/734 atomic regions from SNP 209550 to 210150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,099 DEBUG Processing 49/569 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,111 DEBUG Processing 114/673 atomic regions from SNP 34010 to 34610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,144 DEBUG Processing 383/730 atomic regions from SNP 114878 to 115478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,183 DEBUG Processing 362/686 atomic regions from SNP 108440 to 109040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,226 DEBUG Processing 108/606 atomic regions from SNP 32207 to 32808 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,319 DEBUG Processing 115/673 atomic regions from SNP 34310 to 34910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,341 DEBUG Processing 50/569 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,345 DEBUG Processing 700/734 atomic regions from SNP 209850 to 210450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,352 DEBUG Processing 384/730 atomic regions from SNP 115178 to 115778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,421 DEBUG Processing 109/606 atomic regions from SNP 32508 to 33109 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,436 DEBUG Processing 363/686 atomic regions from SNP 108740 to 109340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,547 DEBUG Processing 116/673 atomic regions from SNP 34610 to 35210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,561 DEBUG Processing 385/730 atomic regions from SNP 115478 to 116078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,587 DEBUG Processing 51/569 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,598 DEBUG Processing 701/734 atomic regions from SNP 210150 to 210750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,616 DEBUG Processing 110/606 atomic regions from SNP 32809 to 33410 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,680 DEBUG Processing 364/686 atomic regions from SNP 109040 to 109640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,753 DEBUG Processing 117/673 atomic regions from SNP 34910 to 35510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,771 DEBUG Processing 386/730 atomic regions from SNP 115778 to 116378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,817 DEBUG Processing 111/606 atomic regions from SNP 33110 to 33711 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,826 DEBUG Processing 52/569 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,849 DEBUG Processing 702/734 atomic regions from SNP 210450 to 211050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,916 DEBUG Processing 365/686 atomic regions from SNP 109340 to 109940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,955 DEBUG Processing 118/673 atomic regions from SNP 35210 to 35810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,988 DEBUG Processing 387/730 atomic regions from SNP 116078 to 116678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,015 DEBUG Processing 112/606 atomic regions from SNP 33411 to 34012 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,070 DEBUG Processing 53/569 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,111 DEBUG Processing 703/734 atomic regions from SNP 210750 to 211350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,145 DEBUG Processing 366/686 atomic regions from SNP 109640 to 110240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,158 DEBUG Processing 119/673 atomic regions from SNP 35510 to 36110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,202 DEBUG Processing 388/730 atomic regions from SNP 116378 to 116978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,214 DEBUG Processing 113/606 atomic regions from SNP 33712 to 34313 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,290 DEBUG Processing 54/569 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,358 DEBUG Processing 120/673 atomic regions from SNP 35810 to 36410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,369 DEBUG Processing 704/734 atomic regions from SNP 211050 to 211650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,370 DEBUG Processing 367/686 atomic regions from SNP 109940 to 110540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,408 DEBUG Processing 114/606 atomic regions from SNP 34013 to 34614 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,411 DEBUG Processing 389/730 atomic regions from SNP 116678 to 117278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,497 DEBUG Processing 55/569 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,563 DEBUG Processing 121/673 atomic regions from SNP 36110 to 36710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,601 DEBUG Processing 368/686 atomic regions from SNP 110240 to 110840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,605 DEBUG Processing 115/606 atomic regions from SNP 34314 to 34915 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,623 DEBUG Processing 390/730 atomic regions from SNP 116978 to 117578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,634 DEBUG Processing 705/734 atomic regions from SNP 211350 to 211950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,715 DEBUG Processing 56/569 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,763 DEBUG Processing 122/673 atomic regions from SNP 36410 to 37010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,801 DEBUG Processing 116/606 atomic regions from SNP 34615 to 35216 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,826 DEBUG Processing 369/686 atomic regions from SNP 110540 to 111140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,833 DEBUG Processing 391/730 atomic regions from SNP 117278 to 117878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,891 DEBUG Processing 706/734 atomic regions from SNP 211650 to 212250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,924 DEBUG Processing 57/569 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,962 DEBUG Processing 123/673 atomic regions from SNP 36710 to 37310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,993 DEBUG Processing 117/606 atomic regions from SNP 34916 to 35517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,046 DEBUG Processing 370/686 atomic regions from SNP 110840 to 111440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,046 DEBUG Processing 392/730 atomic regions from SNP 117578 to 118178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,154 DEBUG Processing 707/734 atomic regions from SNP 211950 to 212550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,169 DEBUG Processing 58/569 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,172 DEBUG Processing 124/673 atomic regions from SNP 37010 to 37610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,197 DEBUG Processing 118/606 atomic regions from SNP 35217 to 35818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,306 DEBUG Processing 393/730 atomic regions from SNP 117878 to 118478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,312 DEBUG Processing 371/686 atomic regions from SNP 111140 to 111740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,410 DEBUG Processing 125/673 atomic regions from SNP 37310 to 37910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,419 DEBUG Processing 59/569 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,427 DEBUG Processing 119/606 atomic regions from SNP 35518 to 36119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,442 DEBUG Processing 708/734 atomic regions from SNP 212250 to 212850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,524 DEBUG Processing 394/730 atomic regions from SNP 118178 to 118778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,528 DEBUG Processing 372/686 atomic regions from SNP 111440 to 112040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,621 DEBUG Processing 126/673 atomic regions from SNP 37610 to 38210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,624 DEBUG Processing 120/606 atomic regions from SNP 35819 to 36420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,637 DEBUG Processing 60/569 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,701 DEBUG Processing 709/734 atomic regions from SNP 212550 to 213150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,738 DEBUG Processing 395/730 atomic regions from SNP 118478 to 119078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,746 DEBUG Processing 373/686 atomic regions from SNP 111740 to 112340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,821 DEBUG Processing 121/606 atomic regions from SNP 36120 to 36721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,827 DEBUG Processing 127/673 atomic regions from SNP 37910 to 38510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,861 DEBUG Processing 61/569 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,958 DEBUG Processing 396/730 atomic regions from SNP 118778 to 119378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,965 DEBUG Processing 710/734 atomic regions from SNP 212850 to 213450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,968 DEBUG Processing 374/686 atomic regions from SNP 112040 to 112640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,020 DEBUG Processing 122/606 atomic regions from SNP 36421 to 37022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,035 DEBUG Processing 128/673 atomic regions from SNP 38210 to 38810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,084 DEBUG Processing 62/569 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,187 DEBUG Processing 375/686 atomic regions from SNP 112340 to 112940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,194 DEBUG Processing 397/730 atomic regions from SNP 119078 to 119678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,216 DEBUG Processing 123/606 atomic regions from SNP 36722 to 37323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,218 DEBUG Processing 711/734 atomic regions from SNP 213150 to 213750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,257 DEBUG Processing 129/673 atomic regions from SNP 38510 to 39110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,308 DEBUG Processing 63/569 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,407 DEBUG Processing 376/686 atomic regions from SNP 112640 to 113240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,411 DEBUG Processing 124/606 atomic regions from SNP 37023 to 37624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,427 DEBUG Processing 398/730 atomic regions from SNP 119378 to 119978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,478 DEBUG Processing 712/734 atomic regions from SNP 213450 to 214050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,494 DEBUG Processing 130/673 atomic regions from SNP 38810 to 39410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,538 DEBUG Processing 64/569 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,603 DEBUG Processing 125/606 atomic regions from SNP 37324 to 37925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,632 DEBUG Processing 377/686 atomic regions from SNP 112940 to 113540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,669 DEBUG Processing 399/730 atomic regions from SNP 119678 to 120278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,712 DEBUG Processing 131/673 atomic regions from SNP 39110 to 39710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,741 DEBUG Processing 713/734 atomic regions from SNP 213750 to 214350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,767 DEBUG Processing 65/569 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,794 DEBUG Processing 126/606 atomic regions from SNP 37625 to 38226 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,857 DEBUG Processing 378/686 atomic regions from SNP 113240 to 113840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,912 DEBUG Processing 400/730 atomic regions from SNP 119978 to 120578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,915 DEBUG Processing 132/673 atomic regions from SNP 39410 to 40010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,981 DEBUG Processing 127/606 atomic regions from SNP 37926 to 38527 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,985 DEBUG Processing 714/734 atomic regions from SNP 214050 to 214650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,986 DEBUG Processing 66/569 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,076 DEBUG Processing 379/686 atomic regions from SNP 113540 to 114140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,119 DEBUG Processing 133/673 atomic regions from SNP 39710 to 40310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,138 DEBUG Processing 401/730 atomic regions from SNP 120278 to 120878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,172 DEBUG Processing 128/606 atomic regions from SNP 38227 to 38828 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,220 DEBUG Processing 67/569 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,232 DEBUG Processing 715/734 atomic regions from SNP 214350 to 214950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,302 DEBUG Processing 380/686 atomic regions from SNP 113840 to 114440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,320 DEBUG Processing 134/673 atomic regions from SNP 40010 to 40610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,361 DEBUG Processing 129/606 atomic regions from SNP 38528 to 39129 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,384 DEBUG Processing 402/730 atomic regions from SNP 120578 to 121178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,447 DEBUG Processing 68/569 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,476 DEBUG Processing 716/734 atomic regions from SNP 214650 to 215250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,519 DEBUG Processing 135/673 atomic regions from SNP 40310 to 40910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,522 DEBUG Processing 381/686 atomic regions from SNP 114140 to 114740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,551 DEBUG Processing 130/606 atomic regions from SNP 38829 to 39430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,622 DEBUG Processing 403/730 atomic regions from SNP 120878 to 121478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,665 DEBUG Processing 69/569 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,717 DEBUG Processing 136/673 atomic regions from SNP 40610 to 41210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,730 DEBUG Processing 717/734 atomic regions from SNP 214950 to 215550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,740 DEBUG Processing 382/686 atomic regions from SNP 114440 to 115040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,740 DEBUG Processing 131/606 atomic regions from SNP 39130 to 39731 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,863 DEBUG Processing 70/569 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,869 DEBUG Processing 404/730 atomic regions from SNP 121178 to 121778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,924 DEBUG Processing 137/673 atomic regions from SNP 40910 to 41510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,936 DEBUG Processing 132/606 atomic regions from SNP 39431 to 40032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,971 DEBUG Processing 383/686 atomic regions from SNP 114740 to 115340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,992 DEBUG Processing 718/734 atomic regions from SNP 215250 to 215850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,055 DEBUG Processing 71/569 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,112 DEBUG Processing 405/730 atomic regions from SNP 121478 to 122078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,126 DEBUG Processing 138/673 atomic regions from SNP 41210 to 41810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,132 DEBUG Processing 133/606 atomic regions from SNP 39732 to 40333 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,221 DEBUG Processing 384/686 atomic regions from SNP 115040 to 115640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,246 DEBUG Processing 719/734 atomic regions from SNP 215550 to 216150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,257 DEBUG Processing 72/569 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,328 DEBUG Processing 139/673 atomic regions from SNP 41510 to 42110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,328 DEBUG Processing 134/606 atomic regions from SNP 40033 to 40634 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,352 DEBUG Processing 406/730 atomic regions from SNP 121778 to 122378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,465 DEBUG Processing 73/569 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,475 DEBUG Processing 385/686 atomic regions from SNP 115340 to 115940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,512 DEBUG Processing 720/734 atomic regions from SNP 215850 to 216450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,529 DEBUG Processing 135/606 atomic regions from SNP 40334 to 40935 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,529 DEBUG Processing 140/673 atomic regions from SNP 41810 to 42410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,583 DEBUG Processing 407/730 atomic regions from SNP 122078 to 122678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,670 DEBUG Processing 74/569 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,704 DEBUG Processing 386/686 atomic regions from SNP 115640 to 116240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,718 DEBUG Processing 136/606 atomic regions from SNP 40635 to 41236 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,729 DEBUG Processing 141/673 atomic regions from SNP 42110 to 42710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,768 DEBUG Processing 721/734 atomic regions from SNP 216150 to 216750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,810 DEBUG Processing 408/730 atomic regions from SNP 122378 to 122978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,872 DEBUG Processing 75/569 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,907 DEBUG Processing 137/606 atomic regions from SNP 40936 to 41537 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,919 DEBUG Processing 387/686 atomic regions from SNP 115940 to 116540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,926 DEBUG Processing 142/673 atomic regions from SNP 42410 to 43010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,015 DEBUG Processing 722/734 atomic regions from SNP 216450 to 217050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,049 DEBUG Processing 409/730 atomic regions from SNP 122678 to 123278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,077 DEBUG Processing 76/569 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,109 DEBUG Processing 138/606 atomic regions from SNP 41237 to 41838 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,140 DEBUG Processing 388/686 atomic regions from SNP 116240 to 116840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,141 DEBUG Processing 143/673 atomic regions from SNP 42710 to 43310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,259 DEBUG Processing 723/734 atomic regions from SNP 216750 to 217350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,284 DEBUG Processing 77/569 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,291 DEBUG Processing 410/730 atomic regions from SNP 122978 to 123578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,302 DEBUG Processing 139/606 atomic regions from SNP 41538 to 42139 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,343 DEBUG Processing 144/673 atomic regions from SNP 43010 to 43610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,357 DEBUG Processing 389/686 atomic regions from SNP 116540 to 117140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,493 DEBUG Processing 78/569 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,496 DEBUG Processing 140/606 atomic regions from SNP 41839 to 42440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,512 DEBUG Processing 411/730 atomic regions from SNP 123278 to 123878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,512 DEBUG Processing 724/734 atomic regions from SNP 217050 to 217650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,544 DEBUG Processing 145/673 atomic regions from SNP 43310 to 43910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,581 DEBUG Processing 390/686 atomic regions from SNP 116840 to 117440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,686 DEBUG Processing 141/606 atomic regions from SNP 42140 to 42741 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,697 DEBUG Processing 79/569 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,722 DEBUG Processing 412/730 atomic regions from SNP 123578 to 124178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,755 DEBUG Processing 146/673 atomic regions from SNP 43610 to 44210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,757 DEBUG Processing 725/734 atomic regions from SNP 217350 to 217950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,812 DEBUG Processing 391/686 atomic regions from SNP 117140 to 117740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,873 DEBUG Processing 142/606 atomic regions from SNP 42441 to 43042 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,897 DEBUG Processing 80/569 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,926 DEBUG Processing 413/730 atomic regions from SNP 123878 to 124478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,969 DEBUG Processing 147/673 atomic regions from SNP 43910 to 44510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,002 DEBUG Processing 726/734 atomic regions from SNP 217650 to 218250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,037 DEBUG Processing 392/686 atomic regions from SNP 117440 to 118040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,059 DEBUG Processing 143/606 atomic regions from SNP 42742 to 43343 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,096 DEBUG Processing 81/569 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,129 DEBUG Processing 414/730 atomic regions from SNP 124178 to 124778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,171 DEBUG Processing 148/673 atomic regions from SNP 44210 to 44810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,244 DEBUG Processing 727/734 atomic regions from SNP 217950 to 218550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,267 DEBUG Processing 393/686 atomic regions from SNP 117740 to 118340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,271 DEBUG Processing 144/606 atomic regions from SNP 43043 to 43644 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,305 DEBUG Processing 82/569 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,337 DEBUG Processing 415/730 atomic regions from SNP 124478 to 125078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,371 DEBUG Processing 149/673 atomic regions from SNP 44510 to 45110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,487 DEBUG Processing 145/606 atomic regions from SNP 43344 to 43945 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,499 DEBUG Processing 394/686 atomic regions from SNP 118040 to 118640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,506 DEBUG Processing 728/734 atomic regions from SNP 218250 to 218850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,529 DEBUG Processing 83/569 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,542 DEBUG Processing 416/730 atomic regions from SNP 124778 to 125378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,589 DEBUG Processing 150/673 atomic regions from SNP 44810 to 45410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,691 DEBUG Processing 146/606 atomic regions from SNP 43645 to 44246 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,727 DEBUG Processing 395/686 atomic regions from SNP 118340 to 118940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,754 DEBUG Processing 417/730 atomic regions from SNP 125078 to 125678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,766 DEBUG Processing 729/734 atomic regions from SNP 218550 to 219150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,768 DEBUG Processing 84/569 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,818 DEBUG Processing 151/673 atomic regions from SNP 45110 to 45710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,895 DEBUG Processing 147/606 atomic regions from SNP 43946 to 44547 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,958 DEBUG Processing 396/686 atomic regions from SNP 118640 to 119240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,980 DEBUG Processing 418/730 atomic regions from SNP 125378 to 125978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,020 DEBUG Processing 730/734 atomic regions from SNP 218850 to 219450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,022 DEBUG Processing 85/569 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,036 DEBUG Processing 152/673 atomic regions from SNP 45410 to 46010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,087 DEBUG Processing 148/606 atomic regions from SNP 44247 to 44848 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,176 DEBUG Processing 397/686 atomic regions from SNP 118940 to 119540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,195 DEBUG Processing 419/730 atomic regions from SNP 125678 to 126278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,239 DEBUG Processing 153/673 atomic regions from SNP 45710 to 46310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,244 DEBUG Processing 86/569 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,259 DEBUG Processing 731/734 atomic regions from SNP 219150 to 219750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,277 DEBUG Processing 149/606 atomic regions from SNP 44548 to 45149 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,388 DEBUG Processing 398/686 atomic regions from SNP 119240 to 119840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,418 DEBUG Processing 420/730 atomic regions from SNP 125978 to 126578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,441 DEBUG Processing 154/673 atomic regions from SNP 46010 to 46610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,470 DEBUG Processing 150/606 atomic regions from SNP 44849 to 45450 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,480 DEBUG Processing 87/569 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,494 DEBUG Processing 732/734 atomic regions from SNP 219450 to 220050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,602 DEBUG Processing 399/686 atomic regions from SNP 119540 to 120140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,645 DEBUG Processing 155/673 atomic regions from SNP 46310 to 46910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,649 DEBUG Processing 421/730 atomic regions from SNP 126278 to 126878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,663 DEBUG Processing 151/606 atomic regions from SNP 45150 to 45751 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,707 DEBUG Processing 88/569 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,733 DEBUG Processing 733/734 atomic regions from SNP 219750 to 220350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,816 DEBUG Processing 400/686 atomic regions from SNP 119840 to 120440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,855 DEBUG Processing 156/673 atomic regions from SNP 46610 to 47210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,858 DEBUG Processing 152/606 atomic regions from SNP 45451 to 46052 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,862 DEBUG Processing 422/730 atomic regions from SNP 126578 to 127178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,942 DEBUG Processing 89/569 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,966 DEBUG Processing 734/734 atomic regions from SNP 220050 to 220650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:21,047 DEBUG Processing 401/686 atomic regions from SNP 120140 to 120740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,052 DEBUG Processing 153/606 atomic regions from SNP 45752 to 46353 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,071 DEBUG Processing 423/730 atomic regions from SNP 126878 to 127478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,074 DEBUG Processing 157/673 atomic regions from SNP 46910 to 47510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,113 DEBUG Unique SNPs positions in subchromosome 1: 220651 2025-01-31 09:56:21,170 DEBUG Processing 90/569 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,243 DEBUG Processing 154/606 atomic regions from SNP 46053 to 46654 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,273 DEBUG Processing 402/686 atomic regions from SNP 120440 to 121040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,297 DEBUG Processing 424/730 atomic regions from SNP 127178 to 127778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,300 DEBUG Processing 158/673 atomic regions from SNP 47210 to 47810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,391 DEBUG Processing 91/569 atomic regions from SNP 27090 to 27691 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,430 DEBUG Processing 155/606 atomic regions from SNP 46354 to 46955 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,490 DEBUG Processing 403/686 atomic regions from SNP 120740 to 121340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,516 DEBUG Processing 159/673 atomic regions from SNP 47510 to 48110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,534 DEBUG Processing 425/730 atomic regions from SNP 127478 to 128078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,612 DEBUG Processing 156/606 atomic regions from SNP 46655 to 47256 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,614 DEBUG Processing 92/569 atomic regions from SNP 27391 to 27992 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,702 DEBUG Processing 404/686 atomic regions from SNP 121040 to 121640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,716 DEBUG Processing 160/673 atomic regions from SNP 47810 to 48410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,756 DEBUG Processing 426/730 atomic regions from SNP 127778 to 128378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,797 DEBUG Processing 157/606 atomic regions from SNP 46956 to 47557 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,832 DEBUG Processing 93/569 atomic regions from SNP 27692 to 28293 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,916 DEBUG Processing 161/673 atomic regions from SNP 48110 to 48710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,926 DEBUG Processing 405/686 atomic regions from SNP 121340 to 121940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,964 DEBUG Processing 427/730 atomic regions from SNP 128078 to 128678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,985 DEBUG Processing 158/606 atomic regions from SNP 47257 to 47858 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,049 DEBUG Processing 94/569 atomic regions from SNP 27993 to 28594 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,111 DEBUG Processing 162/673 atomic regions from SNP 48410 to 49010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,151 DEBUG Processing 406/686 atomic regions from SNP 121640 to 122240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,167 DEBUG Processing 428/730 atomic regions from SNP 128378 to 128978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,171 DEBUG Processing 159/606 atomic regions from SNP 47558 to 48159 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,262 DEBUG Processing 95/569 atomic regions from SNP 28294 to 28895 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,307 DEBUG Processing 163/673 atomic regions from SNP 48710 to 49310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,359 DEBUG Processing 160/606 atomic regions from SNP 47859 to 48460 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,374 DEBUG Processing 429/730 atomic regions from SNP 128678 to 129278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,389 DEBUG Processing 407/686 atomic regions from SNP 121940 to 122540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,456 DEBUG Processing 96/569 atomic regions from SNP 28595 to 29196 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,502 DEBUG Processing 164/673 atomic regions from SNP 49010 to 49610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,546 DEBUG Processing 161/606 atomic regions from SNP 48160 to 48761 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,578 DEBUG Processing 430/730 atomic regions from SNP 128978 to 129578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,634 DEBUG Processing 408/686 atomic regions from SNP 122240 to 122840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,644 DEBUG Processing 97/569 atomic regions from SNP 28896 to 29497 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,698 DEBUG Processing 165/673 atomic regions from SNP 49310 to 49910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,731 DEBUG Processing 162/606 atomic regions from SNP 48461 to 49062 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,777 DEBUG Processing 431/730 atomic regions from SNP 129278 to 129878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,831 DEBUG Processing 98/569 atomic regions from SNP 29197 to 29798 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,876 DEBUG Processing 409/686 atomic regions from SNP 122540 to 123140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,894 DEBUG Processing 166/673 atomic regions from SNP 49610 to 50210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,916 DEBUG Processing 163/606 atomic regions from SNP 48762 to 49363 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,977 DEBUG Processing 432/730 atomic regions from SNP 129578 to 130178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,022 DEBUG Processing 99/569 atomic regions from SNP 29498 to 30099 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,087 DEBUG Processing 167/673 atomic regions from SNP 49910 to 50510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,100 DEBUG Processing 164/606 atomic regions from SNP 49063 to 49664 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,115 DEBUG Processing 410/686 atomic regions from SNP 122840 to 123440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,188 DEBUG Processing 433/730 atomic regions from SNP 129878 to 130478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,209 DEBUG Processing 100/569 atomic regions from SNP 29799 to 30400 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,283 DEBUG Processing 168/673 atomic regions from SNP 50210 to 50810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,287 DEBUG Processing 165/606 atomic regions from SNP 49364 to 49965 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,354 DEBUG Processing 411/686 atomic regions from SNP 123140 to 123740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,397 DEBUG Processing 101/569 atomic regions from SNP 30100 to 30701 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,407 DEBUG Processing 434/730 atomic regions from SNP 130178 to 130778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,474 DEBUG Processing 166/606 atomic regions from SNP 49665 to 50266 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,478 DEBUG Processing 169/673 atomic regions from SNP 50510 to 51110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,591 DEBUG Processing 102/569 atomic regions from SNP 30401 to 31002 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,597 DEBUG Processing 412/686 atomic regions from SNP 123440 to 124040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,641 DEBUG Processing 435/730 atomic regions from SNP 130478 to 131078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,676 DEBUG Processing 170/673 atomic regions from SNP 50810 to 51410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,685 DEBUG Processing 167/606 atomic regions from SNP 49966 to 50567 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,788 DEBUG Processing 103/569 atomic regions from SNP 30702 to 31303 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,827 DEBUG Processing 413/686 atomic regions from SNP 123740 to 124340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,845 DEBUG Processing 436/730 atomic regions from SNP 130778 to 131378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,875 DEBUG Processing 171/673 atomic regions from SNP 51110 to 51710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,896 DEBUG Processing 168/606 atomic regions from SNP 50267 to 50868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,001 DEBUG Processing 104/569 atomic regions from SNP 31003 to 31604 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,052 DEBUG Processing 414/686 atomic regions from SNP 124040 to 124640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,071 DEBUG Processing 172/673 atomic regions from SNP 51410 to 52010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,074 DEBUG Processing 437/730 atomic regions from SNP 131078 to 131678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,108 DEBUG Processing 169/606 atomic regions from SNP 50568 to 51169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,225 DEBUG Processing 105/569 atomic regions from SNP 31304 to 31905 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,263 DEBUG Processing 415/686 atomic regions from SNP 124340 to 124940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,272 DEBUG Subchromosome time: 216.15147481800523, subchromosome SNPs: 220651 2025-01-31 09:56:24,273 DEBUG Estimated BADs: [1.54, 3.08, 1.54, 9.24, 3.08, 1.03, 3.08, 6.16, 3.08, 1.54, 3.08, 6.16, 3.08, 6.16] SNP counts: [18339, 2844, 9043, 2682, 29136, 3293, 32372, 18690, 22440, 25201, 23123, 8097, 16090, 9301] SNP IDs counts: [18339, 2844, 9043, 2682, 29136, 3293, 32372, 18690, 22440, 25201, 23123, 8097, 16090, 9301] Critical gap: 594084bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.82Mbp, 15.35Mbp, 20.60Mbp, 22.01Mbp, 37.97Mbp, 39.86Mbp, 57.07Mbp, 66.83Mbp, 78.97Mbp, 93.73Mbp, 106.14Mbp, 110.62Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:56:24,273 DEBUG chr9 time: 216.15188900392968 s 2025-01-31 09:56:24,277 DEBUG Processing 173/673 atomic regions from SNP 51710 to 52310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,305 DEBUG Processing 170/606 atomic regions from SNP 50869 to 51470 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,307 DEBUG Processing 438/730 atomic regions from SNP 131378 to 131978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,391 DEBUG chr9: Fitting background model for 14 segments 2025-01-31 09:56:24,445 DEBUG Processing 106/569 atomic regions from SNP 31605 to 32206 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,477 DEBUG Processing 416/686 atomic regions from SNP 124640 to 125240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,481 DEBUG Processing 174/673 atomic regions from SNP 52010 to 52610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,498 DEBUG Processing 171/606 atomic regions from SNP 51170 to 51771 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,549 DEBUG Processing 439/730 atomic regions from SNP 131678 to 132278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,637 DEBUG Processing 107/569 atomic regions from SNP 31906 to 32507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,679 DEBUG Processing 175/673 atomic regions from SNP 52310 to 52910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,687 DEBUG Processing 172/606 atomic regions from SNP 51471 to 52072 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,688 DEBUG Processing 417/686 atomic regions from SNP 124940 to 125540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,786 DEBUG Processing 440/730 atomic regions from SNP 131978 to 132578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,830 DEBUG Processing 108/569 atomic regions from SNP 32207 to 32808 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,874 DEBUG Processing 176/673 atomic regions from SNP 52610 to 53210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,874 DEBUG Processing 173/606 atomic regions from SNP 51772 to 52373 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,899 DEBUG Processing 418/686 atomic regions from SNP 125240 to 125840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,006 DEBUG Processing 441/730 atomic regions from SNP 132278 to 132878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,046 DEBUG Processing 109/569 atomic regions from SNP 32508 to 33109 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,061 DEBUG Processing 174/606 atomic regions from SNP 52073 to 52674 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,071 DEBUG Processing 177/673 atomic regions from SNP 52910 to 53510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,106 DEBUG Processing 419/686 atomic regions from SNP 125540 to 126140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,231 DEBUG Processing 442/730 atomic regions from SNP 132578 to 133178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,250 DEBUG Processing 175/606 atomic regions from SNP 52374 to 52975 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,266 DEBUG Processing 110/569 atomic regions from SNP 32809 to 33410 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,268 DEBUG Processing 178/673 atomic regions from SNP 53210 to 53810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,313 DEBUG Processing 420/686 atomic regions from SNP 125840 to 126440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,449 DEBUG Processing 176/606 atomic regions from SNP 52675 to 53276 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,453 DEBUG Processing 443/730 atomic regions from SNP 132878 to 133478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,468 DEBUG Processing 179/673 atomic regions from SNP 53510 to 54110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,476 DEBUG Processing 111/569 atomic regions from SNP 33110 to 33711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,521 DEBUG Processing 421/686 atomic regions from SNP 126140 to 126740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,639 DEBUG Processing 177/606 atomic regions from SNP 52976 to 53577 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,667 DEBUG Processing 180/673 atomic regions from SNP 53810 to 54410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,676 DEBUG Processing 444/730 atomic regions from SNP 133178 to 133778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,688 DEBUG Processing 112/569 atomic regions from SNP 33411 to 34012 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,735 DEBUG Processing 422/686 atomic regions from SNP 126440 to 127040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,827 DEBUG Processing 178/606 atomic regions from SNP 53277 to 53878 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,865 DEBUG Processing 181/673 atomic regions from SNP 54110 to 54710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,906 DEBUG Processing 445/730 atomic regions from SNP 133478 to 134078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,910 DEBUG Processing 113/569 atomic regions from SNP 33712 to 34313 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,960 DEBUG Processing 423/686 atomic regions from SNP 126740 to 127340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,017 DEBUG Processing 179/606 atomic regions from SNP 53578 to 54179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,065 DEBUG Processing 182/673 atomic regions from SNP 54410 to 55010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,121 DEBUG Processing 446/730 atomic regions from SNP 133778 to 134378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,127 DEBUG Processing 114/569 atomic regions from SNP 34013 to 34614 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,176 DEBUG Processing 424/686 atomic regions from SNP 127040 to 127640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,198 DEBUG Processing 180/606 atomic regions from SNP 53879 to 54480 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,255 DEBUG Processing 183/673 atomic regions from SNP 54710 to 55310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,328 DEBUG Processing 447/730 atomic regions from SNP 134078 to 134678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,328 DEBUG Processing 115/569 atomic regions from SNP 34314 to 34915 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,382 DEBUG Processing 181/606 atomic regions from SNP 54180 to 54781 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,389 DEBUG Processing 425/686 atomic regions from SNP 127340 to 127940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,444 DEBUG Processing 184/673 atomic regions from SNP 55010 to 55610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,530 DEBUG Processing 116/569 atomic regions from SNP 34615 to 35216 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,535 DEBUG Processing 448/730 atomic regions from SNP 134378 to 134978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,564 DEBUG Processing 182/606 atomic regions from SNP 54481 to 55082 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,602 DEBUG Processing 426/686 atomic regions from SNP 127640 to 128240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,635 DEBUG Processing 185/673 atomic regions from SNP 55310 to 55910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,737 DEBUG Processing 449/730 atomic regions from SNP 134678 to 135278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,738 DEBUG Processing 117/569 atomic regions from SNP 34916 to 35517 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,750 DEBUG Processing 183/606 atomic regions from SNP 54782 to 55383 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,815 DEBUG Processing 427/686 atomic regions from SNP 127940 to 128540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,830 DEBUG Processing 186/673 atomic regions from SNP 55610 to 56210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,931 DEBUG Processing 118/569 atomic regions from SNP 35217 to 35818 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,936 DEBUG Processing 450/730 atomic regions from SNP 134978 to 135578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,939 DEBUG Processing 184/606 atomic regions from SNP 55083 to 55684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,024 DEBUG Processing 428/686 atomic regions from SNP 128240 to 128840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,028 DEBUG Processing 187/673 atomic regions from SNP 55910 to 56510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,142 DEBUG Processing 185/606 atomic regions from SNP 55384 to 55985 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,146 DEBUG Processing 119/569 atomic regions from SNP 35518 to 36119 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,153 DEBUG Processing 451/730 atomic regions from SNP 135278 to 135878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,225 DEBUG Processing 188/673 atomic regions from SNP 56210 to 56810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,232 DEBUG Processing 429/686 atomic regions from SNP 128540 to 129140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,346 DEBUG Processing 186/606 atomic regions from SNP 55685 to 56286 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,353 DEBUG Processing 120/569 atomic regions from SNP 35819 to 36420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,384 DEBUG Processing 452/730 atomic regions from SNP 135578 to 136178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,419 DEBUG Processing 189/673 atomic regions from SNP 56510 to 57110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,440 DEBUG Processing 430/686 atomic regions from SNP 128840 to 129440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,533 DEBUG Processing 187/606 atomic regions from SNP 55986 to 56587 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,554 DEBUG Processing 121/569 atomic regions from SNP 36120 to 36721 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,606 DEBUG Processing 453/730 atomic regions from SNP 135878 to 136478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,614 DEBUG Processing 190/673 atomic regions from SNP 56810 to 57410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,647 DEBUG Processing 431/686 atomic regions from SNP 129140 to 129740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,719 DEBUG Processing 188/606 atomic regions from SNP 56287 to 56888 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,747 DEBUG Processing 122/569 atomic regions from SNP 36421 to 37022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,814 DEBUG Processing 191/673 atomic regions from SNP 57110 to 57710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,842 DEBUG Processing 454/730 atomic regions from SNP 136178 to 136778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,859 DEBUG Processing 432/686 atomic regions from SNP 129440 to 130040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,904 DEBUG Processing 189/606 atomic regions from SNP 56588 to 57189 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,938 DEBUG Processing 123/569 atomic regions from SNP 36722 to 37323 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,008 DEBUG Processing 192/673 atomic regions from SNP 57410 to 58010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,060 DEBUG Processing 433/686 atomic regions from SNP 129740 to 130340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,072 DEBUG Processing 455/730 atomic regions from SNP 136478 to 137078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,111 DEBUG Processing 190/606 atomic regions from SNP 56889 to 57490 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,129 DEBUG Processing 124/569 atomic regions from SNP 37023 to 37624 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,210 DEBUG Processing 193/673 atomic regions from SNP 57710 to 58310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,267 DEBUG Processing 434/686 atomic regions from SNP 130040 to 130640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,317 DEBUG Processing 456/730 atomic regions from SNP 136778 to 137378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,319 DEBUG Processing 125/569 atomic regions from SNP 37324 to 37925 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,320 DEBUG Processing 191/606 atomic regions from SNP 57190 to 57791 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,405 DEBUG Processing 194/673 atomic regions from SNP 58010 to 58610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,479 DEBUG Processing 435/686 atomic regions from SNP 130340 to 130940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,512 DEBUG Processing 192/606 atomic regions from SNP 57491 to 58092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,514 DEBUG Processing 126/569 atomic regions from SNP 37625 to 38226 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,557 DEBUG Processing 457/730 atomic regions from SNP 137078 to 137678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,602 DEBUG Processing 195/673 atomic regions from SNP 58310 to 58910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,697 DEBUG Processing 193/606 atomic regions from SNP 57792 to 58393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,709 DEBUG Processing 127/569 atomic regions from SNP 37926 to 38527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,721 DEBUG Processing 436/686 atomic regions from SNP 130640 to 131240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,784 DEBUG Processing 458/730 atomic regions from SNP 137378 to 137978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,796 DEBUG Processing 196/673 atomic regions from SNP 58610 to 59210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,886 DEBUG Processing 194/606 atomic regions from SNP 58093 to 58694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,906 DEBUG Processing 128/569 atomic regions from SNP 38227 to 38828 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,948 DEBUG Processing 437/686 atomic regions from SNP 130940 to 131540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,993 DEBUG Processing 197/673 atomic regions from SNP 58910 to 59510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,004 DEBUG Processing 459/730 atomic regions from SNP 137678 to 138278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,088 DEBUG Processing 195/606 atomic regions from SNP 58394 to 58995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,103 DEBUG Processing 129/569 atomic regions from SNP 38528 to 39129 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,161 DEBUG Processing 438/686 atomic regions from SNP 131240 to 131840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,188 DEBUG Processing 198/673 atomic regions from SNP 59210 to 59810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,225 DEBUG Processing 460/730 atomic regions from SNP 137978 to 138578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,300 DEBUG Processing 196/606 atomic regions from SNP 58695 to 59296 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,301 DEBUG Processing 130/569 atomic regions from SNP 38829 to 39430 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,376 DEBUG Processing 439/686 atomic regions from SNP 131540 to 132140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,395 DEBUG Processing 199/673 atomic regions from SNP 59510 to 60110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,449 DEBUG Processing 461/730 atomic regions from SNP 138278 to 138878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,501 DEBUG Processing 131/569 atomic regions from SNP 39130 to 39731 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,518 DEBUG Processing 197/606 atomic regions from SNP 58996 to 59597 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,594 DEBUG Processing 440/686 atomic regions from SNP 131840 to 132440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,599 DEBUG Processing 200/673 atomic regions from SNP 59810 to 60410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,672 DEBUG Processing 462/730 atomic regions from SNP 138578 to 139178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,693 DEBUG Processing 132/569 atomic regions from SNP 39431 to 40032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,736 DEBUG Processing 198/606 atomic regions from SNP 59297 to 59898 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,792 DEBUG Processing 201/673 atomic regions from SNP 60110 to 60710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,810 DEBUG Processing 441/686 atomic regions from SNP 132140 to 132740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,882 DEBUG Processing 463/730 atomic regions from SNP 138878 to 139478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,888 DEBUG Processing 133/569 atomic regions from SNP 39732 to 40333 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,958 DEBUG Processing 199/606 atomic regions from SNP 59598 to 60199 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,982 DEBUG Processing 202/673 atomic regions from SNP 60410 to 61010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,030 DEBUG Processing 442/686 atomic regions from SNP 132440 to 133040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,083 DEBUG Processing 134/569 atomic regions from SNP 40033 to 40634 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,086 DEBUG Processing 464/730 atomic regions from SNP 139178 to 139778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,177 DEBUG Processing 203/673 atomic regions from SNP 60710 to 61310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,180 DEBUG Processing 200/606 atomic regions from SNP 59899 to 60500 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,246 DEBUG Processing 443/686 atomic regions from SNP 132740 to 133340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,283 DEBUG Processing 135/569 atomic regions from SNP 40334 to 40935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,310 DEBUG Processing 465/730 atomic regions from SNP 139478 to 140078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,388 DEBUG Processing 204/673 atomic regions from SNP 61010 to 61610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,395 DEBUG Processing 201/606 atomic regions from SNP 60200 to 60801 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,460 DEBUG Processing 444/686 atomic regions from SNP 133040 to 133640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,485 DEBUG Processing 136/569 atomic regions from SNP 40635 to 41236 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,544 DEBUG Processing 466/730 atomic regions from SNP 139778 to 140378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,593 DEBUG Processing 205/673 atomic regions from SNP 61310 to 61910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,600 DEBUG Processing 202/606 atomic regions from SNP 60501 to 61102 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,681 DEBUG Processing 445/686 atomic regions from SNP 133340 to 133940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,689 DEBUG Processing 137/569 atomic regions from SNP 40936 to 41537 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,764 DEBUG Processing 467/730 atomic regions from SNP 140078 to 140678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,786 DEBUG Processing 206/673 atomic regions from SNP 61610 to 62210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,794 DEBUG Processing 203/606 atomic regions from SNP 60802 to 61403 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,888 DEBUG Processing 138/569 atomic regions from SNP 41237 to 41838 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,893 DEBUG Processing 446/686 atomic regions from SNP 133640 to 134240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,972 DEBUG Processing 468/730 atomic regions from SNP 140378 to 140978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,980 DEBUG Processing 207/673 atomic regions from SNP 61910 to 62510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,989 DEBUG Processing 204/606 atomic regions from SNP 61103 to 61704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,086 DEBUG Processing 139/569 atomic regions from SNP 41538 to 42139 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,108 DEBUG Processing 447/686 atomic regions from SNP 133940 to 134540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,179 DEBUG Processing 208/673 atomic regions from SNP 62210 to 62810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,186 DEBUG Processing 205/606 atomic regions from SNP 61404 to 62005 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,194 DEBUG Processing 469/730 atomic regions from SNP 140678 to 141278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,281 DEBUG Processing 140/569 atomic regions from SNP 41839 to 42440 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,325 DEBUG Processing 448/686 atomic regions from SNP 134240 to 134840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,379 DEBUG Processing 209/673 atomic regions from SNP 62510 to 63110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,384 DEBUG Processing 206/606 atomic regions from SNP 61705 to 62306 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,410 DEBUG Processing 470/730 atomic regions from SNP 140978 to 141578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,474 DEBUG Processing 141/569 atomic regions from SNP 42140 to 42741 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,536 DEBUG Processing 449/686 atomic regions from SNP 134540 to 135140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,582 DEBUG Processing 210/673 atomic regions from SNP 62810 to 63410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,585 DEBUG Processing 207/606 atomic regions from SNP 62006 to 62607 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,617 DEBUG Processing 471/730 atomic regions from SNP 141278 to 141878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,669 DEBUG Processing 142/569 atomic regions from SNP 42441 to 43042 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,742 DEBUG Processing 450/686 atomic regions from SNP 134840 to 135440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,775 DEBUG Processing 211/673 atomic regions from SNP 63110 to 63710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,794 DEBUG Processing 208/606 atomic regions from SNP 62307 to 62908 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,815 DEBUG Processing 472/730 atomic regions from SNP 141578 to 142178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,863 DEBUG Processing 143/569 atomic regions from SNP 42742 to 43343 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,947 DEBUG Processing 451/686 atomic regions from SNP 135140 to 135740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,969 DEBUG Processing 212/673 atomic regions from SNP 63410 to 64010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,011 DEBUG Processing 209/606 atomic regions from SNP 62608 to 63209 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,013 DEBUG Processing 473/730 atomic regions from SNP 141878 to 142478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,063 DEBUG Processing 144/569 atomic regions from SNP 43043 to 43644 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,164 DEBUG Processing 213/673 atomic regions from SNP 63710 to 64310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,173 DEBUG Processing 452/686 atomic regions from SNP 135440 to 136040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,212 DEBUG Processing 474/730 atomic regions from SNP 142178 to 142778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,230 DEBUG Processing 210/606 atomic regions from SNP 62909 to 63510 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,265 DEBUG Processing 145/569 atomic regions from SNP 43344 to 43945 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,357 DEBUG Processing 214/673 atomic regions from SNP 64010 to 64610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,387 DEBUG Processing 453/686 atomic regions from SNP 135740 to 136340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,409 DEBUG Processing 475/730 atomic regions from SNP 142478 to 143078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,446 DEBUG Processing 211/606 atomic regions from SNP 63210 to 63811 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,463 DEBUG Processing 146/569 atomic regions from SNP 43645 to 44246 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,548 DEBUG Processing 215/673 atomic regions from SNP 64310 to 64910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,593 DEBUG Processing 454/686 atomic regions from SNP 136040 to 136640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,610 DEBUG Processing 476/730 atomic regions from SNP 142778 to 143378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,648 DEBUG Processing 212/606 atomic regions from SNP 63511 to 64112 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,661 DEBUG Processing 147/569 atomic regions from SNP 43946 to 44547 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,734 DEBUG Processing 216/673 atomic regions from SNP 64610 to 65210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,799 DEBUG Processing 455/686 atomic regions from SNP 136340 to 136940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,809 DEBUG Processing 477/730 atomic regions from SNP 143078 to 143678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,840 DEBUG Processing 213/606 atomic regions from SNP 63812 to 64413 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,857 DEBUG Processing 148/569 atomic regions from SNP 44247 to 44848 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,926 DEBUG Processing 217/673 atomic regions from SNP 64910 to 65510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,006 DEBUG Processing 478/730 atomic regions from SNP 143378 to 143978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,022 DEBUG Processing 214/606 atomic regions from SNP 64113 to 64714 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,023 DEBUG Processing 456/686 atomic regions from SNP 136640 to 137240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,053 DEBUG Processing 149/569 atomic regions from SNP 44548 to 45149 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,113 DEBUG Processing 218/673 atomic regions from SNP 65210 to 65810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,206 DEBUG Processing 479/730 atomic regions from SNP 143678 to 144278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,206 DEBUG Processing 215/606 atomic regions from SNP 64414 to 65015 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,249 DEBUG Processing 150/569 atomic regions from SNP 44849 to 45450 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,265 DEBUG Processing 457/686 atomic regions from SNP 136940 to 137540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,302 DEBUG Processing 219/673 atomic regions from SNP 65510 to 66110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,389 DEBUG Processing 216/606 atomic regions from SNP 64715 to 65316 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,403 DEBUG Processing 480/730 atomic regions from SNP 143978 to 144578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,447 DEBUG Processing 151/569 atomic regions from SNP 45150 to 45751 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,489 DEBUG Processing 458/686 atomic regions from SNP 137240 to 137840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,496 DEBUG Processing 220/673 atomic regions from SNP 65810 to 66410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,584 DEBUG Processing 217/606 atomic regions from SNP 65016 to 65617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,604 DEBUG Processing 481/730 atomic regions from SNP 144278 to 144878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,644 DEBUG Processing 152/569 atomic regions from SNP 45451 to 46052 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,694 DEBUG Processing 221/673 atomic regions from SNP 66110 to 66710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,704 DEBUG Processing 459/686 atomic regions from SNP 137540 to 138140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,768 DEBUG Processing 218/606 atomic regions from SNP 65317 to 65918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,802 DEBUG Processing 482/730 atomic regions from SNP 144578 to 145178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,840 DEBUG Processing 153/569 atomic regions from SNP 45752 to 46353 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,885 DEBUG Processing 222/673 atomic regions from SNP 66410 to 67010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,913 DEBUG Processing 460/686 atomic regions from SNP 137840 to 138440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,950 DEBUG Processing 219/606 atomic regions from SNP 65618 to 66219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,996 DEBUG Processing 483/730 atomic regions from SNP 144878 to 145478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,035 DEBUG Processing 154/569 atomic regions from SNP 46053 to 46654 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,076 DEBUG Processing 223/673 atomic regions from SNP 66710 to 67310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,125 DEBUG Processing 461/686 atomic regions from SNP 138140 to 138740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,135 DEBUG Processing 220/606 atomic regions from SNP 65919 to 66520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,197 DEBUG Processing 484/730 atomic regions from SNP 145178 to 145778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,241 DEBUG Processing 155/569 atomic regions from SNP 46354 to 46955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,277 DEBUG Processing 224/673 atomic regions from SNP 67010 to 67610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,325 DEBUG Processing 221/606 atomic regions from SNP 66220 to 66821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,343 DEBUG Processing 462/686 atomic regions from SNP 138440 to 139040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,410 DEBUG Processing 485/730 atomic regions from SNP 145478 to 146078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,440 DEBUG Processing 156/569 atomic regions from SNP 46655 to 47256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,474 DEBUG Processing 225/673 atomic regions from SNP 67310 to 67910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,511 DEBUG Processing 222/606 atomic regions from SNP 66521 to 67122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,559 DEBUG Processing 463/686 atomic regions from SNP 138740 to 139340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,629 DEBUG Processing 486/730 atomic regions from SNP 145778 to 146378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,639 DEBUG Processing 157/569 atomic regions from SNP 46956 to 47557 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,671 DEBUG Processing 226/673 atomic regions from SNP 67610 to 68210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,701 DEBUG Processing 223/606 atomic regions from SNP 66822 to 67423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,775 DEBUG Processing 464/686 atomic regions from SNP 139040 to 139640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,828 DEBUG Processing 487/730 atomic regions from SNP 146078 to 146678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,834 DEBUG Processing 158/569 atomic regions from SNP 47257 to 47858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,865 DEBUG Processing 227/673 atomic regions from SNP 67910 to 68510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,888 DEBUG Processing 224/606 atomic regions from SNP 67123 to 67724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,992 DEBUG Processing 465/686 atomic regions from SNP 139340 to 139940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,033 DEBUG Processing 159/569 atomic regions from SNP 47558 to 48159 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,044 DEBUG Processing 488/730 atomic regions from SNP 146378 to 146978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,059 DEBUG Processing 228/673 atomic regions from SNP 68210 to 68810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,076 DEBUG Processing 225/606 atomic regions from SNP 67424 to 68025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,213 DEBUG Processing 466/686 atomic regions from SNP 139640 to 140240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,229 DEBUG Processing 160/569 atomic regions from SNP 47859 to 48460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,253 DEBUG Processing 489/730 atomic regions from SNP 146678 to 147278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,255 DEBUG Processing 229/673 atomic regions from SNP 68510 to 69110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,264 DEBUG Processing 226/606 atomic regions from SNP 67725 to 68326 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,426 DEBUG Processing 467/686 atomic regions from SNP 139940 to 140540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,429 DEBUG Processing 161/569 atomic regions from SNP 48160 to 48761 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,448 DEBUG Processing 230/673 atomic regions from SNP 68810 to 69410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,449 DEBUG Processing 227/606 atomic regions from SNP 68026 to 68627 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,455 DEBUG Processing 490/730 atomic regions from SNP 146978 to 147578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,628 DEBUG Processing 162/569 atomic regions from SNP 48461 to 49062 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,634 DEBUG Processing 228/606 atomic regions from SNP 68327 to 68928 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,641 DEBUG Processing 468/686 atomic regions from SNP 140240 to 140840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,641 DEBUG Processing 231/673 atomic regions from SNP 69110 to 69710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,655 DEBUG Processing 491/730 atomic regions from SNP 147278 to 147878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,817 DEBUG Processing 229/606 atomic regions from SNP 68628 to 69229 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,832 DEBUG Processing 232/673 atomic regions from SNP 69410 to 70010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,833 DEBUG Processing 163/569 atomic regions from SNP 48762 to 49363 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,868 DEBUG Processing 492/730 atomic regions from SNP 147578 to 148178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,878 DEBUG Processing 469/686 atomic regions from SNP 140540 to 141140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,004 DEBUG Processing 230/606 atomic regions from SNP 68929 to 69530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,028 DEBUG Processing 233/673 atomic regions from SNP 69710 to 70310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,047 DEBUG Processing 164/569 atomic regions from SNP 49063 to 49664 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,086 DEBUG Processing 493/730 atomic regions from SNP 147878 to 148478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,095 DEBUG Processing 470/686 atomic regions from SNP 140840 to 141440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,185 DEBUG Processing 231/606 atomic regions from SNP 69230 to 69831 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,219 DEBUG Processing 234/673 atomic regions from SNP 70010 to 70610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,251 DEBUG Processing 165/569 atomic regions from SNP 49364 to 49965 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,292 DEBUG Processing 494/730 atomic regions from SNP 148178 to 148778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,310 DEBUG Processing 471/686 atomic regions from SNP 141140 to 141740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,367 DEBUG Processing 232/606 atomic regions from SNP 69531 to 70132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,410 DEBUG Processing 235/673 atomic regions from SNP 70310 to 70910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,466 DEBUG Processing 166/569 atomic regions from SNP 49665 to 50266 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,496 DEBUG Processing 495/730 atomic regions from SNP 148478 to 149078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,522 DEBUG Processing 472/686 atomic regions from SNP 141440 to 142040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,549 DEBUG Processing 233/606 atomic regions from SNP 69832 to 70433 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,599 DEBUG Processing 236/673 atomic regions from SNP 70610 to 71210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,676 DEBUG Processing 167/569 atomic regions from SNP 49966 to 50567 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,717 DEBUG Processing 496/730 atomic regions from SNP 148778 to 149378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,734 DEBUG Processing 234/606 atomic regions from SNP 70133 to 70734 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,738 DEBUG Processing 473/686 atomic regions from SNP 141740 to 142340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,787 DEBUG Processing 237/673 atomic regions from SNP 70910 to 71510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,882 DEBUG Processing 168/569 atomic regions from SNP 50267 to 50868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,919 DEBUG Processing 235/606 atomic regions from SNP 70434 to 71035 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,941 DEBUG Processing 497/730 atomic regions from SNP 149078 to 149678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,955 DEBUG Processing 474/686 atomic regions from SNP 142040 to 142640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,977 DEBUG Processing 238/673 atomic regions from SNP 71210 to 71810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,088 DEBUG Processing 169/569 atomic regions from SNP 50568 to 51169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,104 DEBUG Processing 236/606 atomic regions from SNP 70735 to 71336 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,171 DEBUG Processing 239/673 atomic regions from SNP 71510 to 72110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,172 DEBUG Processing 475/686 atomic regions from SNP 142340 to 142940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,177 DEBUG Processing 498/730 atomic regions from SNP 149378 to 149978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,286 DEBUG Processing 237/606 atomic regions from SNP 71036 to 71637 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,287 DEBUG Processing 170/569 atomic regions from SNP 50869 to 51470 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,366 DEBUG Processing 240/673 atomic regions from SNP 71810 to 72410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,388 DEBUG Processing 476/686 atomic regions from SNP 142640 to 143240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,394 DEBUG Processing 499/730 atomic regions from SNP 149678 to 150278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,466 DEBUG Processing 238/606 atomic regions from SNP 71337 to 71938 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,496 DEBUG Processing 171/569 atomic regions from SNP 51170 to 51771 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,562 DEBUG Processing 241/673 atomic regions from SNP 72110 to 72710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,604 DEBUG Processing 477/686 atomic regions from SNP 142940 to 143540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,622 DEBUG Processing 500/730 atomic regions from SNP 149978 to 150578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,649 DEBUG Processing 239/606 atomic regions from SNP 71638 to 72239 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,708 DEBUG Processing 172/569 atomic regions from SNP 51471 to 52072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,752 DEBUG Processing 242/673 atomic regions from SNP 72410 to 73010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,816 DEBUG Processing 478/686 atomic regions from SNP 143240 to 143840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,833 DEBUG Processing 240/606 atomic regions from SNP 71939 to 72540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,846 DEBUG Processing 501/730 atomic regions from SNP 150278 to 150878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,898 DEBUG Processing 173/569 atomic regions from SNP 51772 to 52373 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,943 DEBUG Processing 243/673 atomic regions from SNP 72710 to 73310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,021 DEBUG Processing 241/606 atomic regions from SNP 72240 to 72841 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,029 DEBUG Processing 479/686 atomic regions from SNP 143540 to 144140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,053 DEBUG Processing 502/730 atomic regions from SNP 150578 to 151178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,097 DEBUG Processing 174/569 atomic regions from SNP 52073 to 52674 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,133 DEBUG Processing 244/673 atomic regions from SNP 73010 to 73610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,208 DEBUG Processing 242/606 atomic regions from SNP 72541 to 73142 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,244 DEBUG Processing 480/686 atomic regions from SNP 143840 to 144440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,269 DEBUG Processing 503/730 atomic regions from SNP 150878 to 151478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,305 DEBUG Processing 175/569 atomic regions from SNP 52374 to 52975 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,334 DEBUG Processing 245/673 atomic regions from SNP 73310 to 73910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,398 DEBUG Processing 243/606 atomic regions from SNP 72842 to 73443 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,462 DEBUG Processing 481/686 atomic regions from SNP 144140 to 144740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,504 DEBUG Processing 504/730 atomic regions from SNP 151178 to 151778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,513 DEBUG Processing 176/569 atomic regions from SNP 52675 to 53276 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,533 DEBUG Processing 246/673 atomic regions from SNP 73610 to 74210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,590 DEBUG Processing 244/606 atomic regions from SNP 73143 to 73744 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,683 DEBUG Processing 482/686 atomic regions from SNP 144440 to 145040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,733 DEBUG Processing 177/569 atomic regions from SNP 52976 to 53577 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,735 DEBUG Processing 505/730 atomic regions from SNP 151478 to 152078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,737 DEBUG Processing 247/673 atomic regions from SNP 73910 to 74510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,784 DEBUG Processing 245/606 atomic regions from SNP 73444 to 74045 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,902 DEBUG Processing 483/686 atomic regions from SNP 144740 to 145340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,946 DEBUG Processing 248/673 atomic regions from SNP 74210 to 74810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,947 DEBUG Processing 506/730 atomic regions from SNP 151778 to 152378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,966 DEBUG Processing 178/569 atomic regions from SNP 53277 to 53878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,981 DEBUG Processing 246/606 atomic regions from SNP 73745 to 74346 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,124 DEBUG Processing 484/686 atomic regions from SNP 145040 to 145640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,158 DEBUG Processing 249/673 atomic regions from SNP 74510 to 75110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,158 DEBUG Processing 507/730 atomic regions from SNP 152078 to 152678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,176 DEBUG Processing 247/606 atomic regions from SNP 74046 to 74647 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,200 DEBUG Processing 179/569 atomic regions from SNP 53578 to 54179 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,336 DEBUG Processing 485/686 atomic regions from SNP 145340 to 145940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,367 DEBUG Processing 250/673 atomic regions from SNP 74810 to 75410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,368 DEBUG Processing 248/606 atomic regions from SNP 74347 to 74948 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,371 DEBUG Processing 508/730 atomic regions from SNP 152378 to 152978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,422 DEBUG Processing 180/569 atomic regions from SNP 53879 to 54480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,548 DEBUG Processing 486/686 atomic regions from SNP 145640 to 146240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,557 DEBUG Processing 249/606 atomic regions from SNP 74648 to 75249 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,577 DEBUG Processing 251/673 atomic regions from SNP 75110 to 75710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,598 DEBUG Processing 509/730 atomic regions from SNP 152678 to 153278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,639 DEBUG Processing 181/569 atomic regions from SNP 54180 to 54781 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,746 DEBUG Processing 250/606 atomic regions from SNP 74949 to 75550 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,760 DEBUG Processing 487/686 atomic regions from SNP 145940 to 146540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,790 DEBUG Processing 252/673 atomic regions from SNP 75410 to 76010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,814 DEBUG Processing 510/730 atomic regions from SNP 152978 to 153578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,862 DEBUG Processing 182/569 atomic regions from SNP 54481 to 55082 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,933 DEBUG Processing 251/606 atomic regions from SNP 75250 to 75851 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,973 DEBUG Processing 488/686 atomic regions from SNP 146240 to 146840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,000 DEBUG Processing 253/673 atomic regions from SNP 75710 to 76310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,045 DEBUG Processing 511/730 atomic regions from SNP 153278 to 153878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,073 DEBUG Processing 183/569 atomic regions from SNP 54782 to 55383 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,120 DEBUG Processing 252/606 atomic regions from SNP 75551 to 76152 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,197 DEBUG Processing 489/686 atomic regions from SNP 146540 to 147140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,214 DEBUG Processing 254/673 atomic regions from SNP 76010 to 76610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,277 DEBUG Processing 184/569 atomic regions from SNP 55083 to 55684 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,281 DEBUG Processing 512/730 atomic regions from SNP 153578 to 154178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,307 DEBUG Processing 253/606 atomic regions from SNP 75852 to 76453 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,413 DEBUG Processing 490/686 atomic regions from SNP 146840 to 147440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,424 DEBUG Processing 255/673 atomic regions from SNP 76310 to 76910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,487 DEBUG Processing 185/569 atomic regions from SNP 55384 to 55985 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,494 DEBUG Processing 254/606 atomic regions from SNP 76153 to 76754 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,502 DEBUG Processing 513/730 atomic regions from SNP 153878 to 154478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,629 DEBUG Processing 491/686 atomic regions from SNP 147140 to 147740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,636 DEBUG Processing 256/673 atomic regions from SNP 76610 to 77210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,686 DEBUG Processing 255/606 atomic regions from SNP 76454 to 77055 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,700 DEBUG Processing 186/569 atomic regions from SNP 55685 to 56286 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,751 DEBUG Processing 514/730 atomic regions from SNP 154178 to 154778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,841 DEBUG Processing 492/686 atomic regions from SNP 147440 to 148040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,849 DEBUG Processing 257/673 atomic regions from SNP 76910 to 77510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,877 DEBUG Processing 256/606 atomic regions from SNP 76755 to 77356 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,920 DEBUG Processing 187/569 atomic regions from SNP 55986 to 56587 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,985 DEBUG Processing 515/730 atomic regions from SNP 154478 to 155078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,046 DEBUG Processing 493/686 atomic regions from SNP 147740 to 148340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,055 DEBUG Processing 258/673 atomic regions from SNP 77210 to 77810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,065 DEBUG Processing 257/606 atomic regions from SNP 77056 to 77657 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,138 DEBUG Processing 188/569 atomic regions from SNP 56287 to 56888 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,227 DEBUG Processing 516/730 atomic regions from SNP 154778 to 155378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,262 DEBUG Processing 258/606 atomic regions from SNP 77357 to 77958 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,264 DEBUG Processing 494/686 atomic regions from SNP 148040 to 148640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,276 DEBUG Processing 259/673 atomic regions from SNP 77510 to 78110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,344 DEBUG Processing 189/569 atomic regions from SNP 56588 to 57189 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,460 DEBUG Processing 259/606 atomic regions from SNP 77658 to 78259 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,474 DEBUG Processing 517/730 atomic regions from SNP 155078 to 155678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,484 DEBUG Processing 495/686 atomic regions from SNP 148340 to 148940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,492 DEBUG Processing 260/673 atomic regions from SNP 77810 to 78410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,549 DEBUG Processing 190/569 atomic regions from SNP 56889 to 57490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,654 DEBUG Processing 260/606 atomic regions from SNP 77959 to 78560 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,702 DEBUG Processing 496/686 atomic regions from SNP 148640 to 149240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,708 DEBUG Processing 261/673 atomic regions from SNP 78110 to 78710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,711 DEBUG Processing 518/730 atomic regions from SNP 155378 to 155978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,756 DEBUG Processing 191/569 atomic regions from SNP 57190 to 57791 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,852 DEBUG Processing 261/606 atomic regions from SNP 78260 to 78861 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,920 DEBUG Processing 497/686 atomic regions from SNP 148940 to 149540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,924 DEBUG Processing 262/673 atomic regions from SNP 78410 to 79010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,953 DEBUG Processing 519/730 atomic regions from SNP 155678 to 156278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,961 DEBUG Processing 192/569 atomic regions from SNP 57491 to 58092 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,044 DEBUG Processing 262/606 atomic regions from SNP 78561 to 79162 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,138 DEBUG Processing 498/686 atomic regions from SNP 149240 to 149840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,141 DEBUG Processing 263/673 atomic regions from SNP 78710 to 79310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,182 DEBUG Processing 193/569 atomic regions from SNP 57792 to 58393 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,194 DEBUG Processing 520/730 atomic regions from SNP 155978 to 156578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,246 DEBUG Processing 263/606 atomic regions from SNP 78862 to 79463 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,358 DEBUG Processing 499/686 atomic regions from SNP 149540 to 150140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,374 DEBUG Processing 264/673 atomic regions from SNP 79010 to 79610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,406 DEBUG Processing 194/569 atomic regions from SNP 58093 to 58694 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,423 DEBUG Processing 521/730 atomic regions from SNP 156278 to 156878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,449 DEBUG Processing 264/606 atomic regions from SNP 79163 to 79764 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,575 DEBUG Processing 500/686 atomic regions from SNP 149840 to 150440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,611 DEBUG Processing 265/673 atomic regions from SNP 79310 to 79910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,629 DEBUG Processing 195/569 atomic regions from SNP 58394 to 58995 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,650 DEBUG Processing 522/730 atomic regions from SNP 156578 to 157178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,658 DEBUG Processing 265/606 atomic regions from SNP 79464 to 80065 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,791 DEBUG Processing 501/686 atomic regions from SNP 150140 to 150740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,850 DEBUG Processing 196/569 atomic regions from SNP 58695 to 59296 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,860 DEBUG Processing 266/673 atomic regions from SNP 79610 to 80210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,866 DEBUG Processing 266/606 atomic regions from SNP 79765 to 80366 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,882 DEBUG Processing 523/730 atomic regions from SNP 156878 to 157478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,004 DEBUG Processing 502/686 atomic regions from SNP 150440 to 151040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,072 DEBUG Processing 267/606 atomic regions from SNP 80066 to 80667 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,081 DEBUG Processing 197/569 atomic regions from SNP 58996 to 59597 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,096 DEBUG Processing 267/673 atomic regions from SNP 79910 to 80510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,123 DEBUG Processing 524/730 atomic regions from SNP 157178 to 157778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,215 DEBUG Processing 503/686 atomic regions from SNP 150740 to 151340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,268 DEBUG Processing 268/606 atomic regions from SNP 80367 to 80968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,307 DEBUG Processing 198/569 atomic regions from SNP 59297 to 59898 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,319 DEBUG Processing 268/673 atomic regions from SNP 80210 to 80810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,359 DEBUG Processing 525/730 atomic regions from SNP 157478 to 158078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,429 DEBUG Processing 504/686 atomic regions from SNP 151040 to 151640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,464 DEBUG Processing 269/606 atomic regions from SNP 80668 to 81269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,527 DEBUG Processing 199/569 atomic regions from SNP 59598 to 60199 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,539 DEBUG Processing 269/673 atomic regions from SNP 80510 to 81110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,578 DEBUG Processing 526/730 atomic regions from SNP 157778 to 158378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,646 DEBUG Processing 505/686 atomic regions from SNP 151340 to 151940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,658 DEBUG Processing 270/606 atomic regions from SNP 80969 to 81570 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,746 DEBUG Processing 200/569 atomic regions from SNP 59899 to 60500 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,760 DEBUG Processing 270/673 atomic regions from SNP 80810 to 81410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,787 DEBUG Processing 527/730 atomic regions from SNP 158078 to 158678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,848 DEBUG Processing 271/606 atomic regions from SNP 81270 to 81871 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,862 DEBUG Processing 506/686 atomic regions from SNP 151640 to 152240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,955 DEBUG Processing 201/569 atomic regions from SNP 60200 to 60801 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,992 DEBUG Processing 271/673 atomic regions from SNP 81110 to 81710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,997 DEBUG Processing 528/730 atomic regions from SNP 158378 to 158978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,043 DEBUG Processing 272/606 atomic regions from SNP 81571 to 82172 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,082 DEBUG Processing 507/686 atomic regions from SNP 151940 to 152540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,160 DEBUG Processing 202/569 atomic regions from SNP 60501 to 61102 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,212 DEBUG Processing 529/730 atomic regions from SNP 158678 to 159278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,212 DEBUG Processing 272/673 atomic regions from SNP 81410 to 82010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,242 DEBUG Processing 273/606 atomic regions from SNP 81872 to 82473 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,303 DEBUG Processing 508/686 atomic regions from SNP 152240 to 152840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,367 DEBUG Processing 203/569 atomic regions from SNP 60802 to 61403 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,431 DEBUG Processing 530/730 atomic regions from SNP 158978 to 159578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,433 DEBUG Processing 273/673 atomic regions from SNP 81710 to 82310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,445 DEBUG Processing 274/606 atomic regions from SNP 82173 to 82774 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,550 DEBUG Processing 509/686 atomic regions from SNP 152540 to 153140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,684 DEBUG Processing 204/569 atomic regions from SNP 61103 to 61704 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,736 DEBUG Processing 275/606 atomic regions from SNP 82474 to 83075 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,748 DEBUG Processing 531/730 atomic regions from SNP 159278 to 159878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,748 DEBUG Processing 274/673 atomic regions from SNP 82010 to 82610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,794 DEBUG Processing 510/686 atomic regions from SNP 152840 to 153440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,885 DEBUG Processing 205/569 atomic regions from SNP 61404 to 62005 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,933 DEBUG Processing 276/606 atomic regions from SNP 82775 to 83376 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,966 DEBUG Processing 275/673 atomic regions from SNP 82310 to 82910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,966 DEBUG Processing 532/730 atomic regions from SNP 159578 to 160178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,051 DEBUG Processing 511/686 atomic regions from SNP 153140 to 153740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,111 DEBUG Processing 206/569 atomic regions from SNP 61705 to 62306 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,147 DEBUG Processing 277/606 atomic regions from SNP 83076 to 83677 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,192 DEBUG Processing 276/673 atomic regions from SNP 82610 to 83210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,214 DEBUG Processing 533/730 atomic regions from SNP 159878 to 160478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,282 DEBUG Processing 512/686 atomic regions from SNP 153440 to 154040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,311 DEBUG Processing 207/569 atomic regions from SNP 62006 to 62607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,339 DEBUG Processing 278/606 atomic regions from SNP 83377 to 83978 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,408 DEBUG Processing 277/673 atomic regions from SNP 82910 to 83510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,445 DEBUG Processing 534/730 atomic regions from SNP 160178 to 160778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,515 DEBUG Processing 513/686 atomic regions from SNP 153740 to 154340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,519 DEBUG Processing 208/569 atomic regions from SNP 62307 to 62908 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,532 DEBUG Processing 279/606 atomic regions from SNP 83678 to 84279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,625 DEBUG Processing 278/673 atomic regions from SNP 83210 to 83810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,660 DEBUG Processing 535/730 atomic regions from SNP 160478 to 161078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,725 DEBUG Processing 209/569 atomic regions from SNP 62608 to 63209 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,730 DEBUG Processing 280/606 atomic regions from SNP 83979 to 84580 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,754 DEBUG Processing 514/686 atomic regions from SNP 154040 to 154640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,845 DEBUG Processing 279/673 atomic regions from SNP 83510 to 84110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,894 DEBUG Processing 536/730 atomic regions from SNP 160778 to 161378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,964 DEBUG Processing 281/606 atomic regions from SNP 84280 to 84881 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,970 DEBUG Processing 210/569 atomic regions from SNP 62909 to 63510 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,002 DEBUG Processing 515/686 atomic regions from SNP 154340 to 154940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,096 DEBUG Processing 280/673 atomic regions from SNP 83810 to 84410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,135 DEBUG Processing 537/730 atomic regions from SNP 161078 to 161678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,165 DEBUG Processing 282/606 atomic regions from SNP 84581 to 85182 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,205 DEBUG Processing 211/569 atomic regions from SNP 63210 to 63811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,247 DEBUG Processing 516/686 atomic regions from SNP 154640 to 155240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,341 DEBUG Processing 281/673 atomic regions from SNP 84110 to 84710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,355 DEBUG Processing 538/730 atomic regions from SNP 161378 to 161978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,364 DEBUG Processing 283/606 atomic regions from SNP 84882 to 85483 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,449 DEBUG Processing 212/569 atomic regions from SNP 63511 to 64112 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,483 DEBUG Processing 517/686 atomic regions from SNP 154940 to 155540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,570 DEBUG Processing 282/673 atomic regions from SNP 84410 to 85010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,570 DEBUG Processing 284/606 atomic regions from SNP 85183 to 85784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,582 DEBUG Processing 539/730 atomic regions from SNP 161678 to 162278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,685 DEBUG Processing 213/569 atomic regions from SNP 63812 to 64413 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,712 DEBUG Processing 518/686 atomic regions from SNP 155240 to 155840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,775 DEBUG Processing 285/606 atomic regions from SNP 85484 to 86085 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,804 DEBUG Processing 540/730 atomic regions from SNP 161978 to 162578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,804 DEBUG Processing 283/673 atomic regions from SNP 84710 to 85310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,922 DEBUG Processing 214/569 atomic regions from SNP 64113 to 64714 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,957 DEBUG Processing 519/686 atomic regions from SNP 155540 to 156140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,981 DEBUG Processing 286/606 atomic regions from SNP 85785 to 86386 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,026 DEBUG Processing 541/730 atomic regions from SNP 162278 to 162878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,063 DEBUG Processing 284/673 atomic regions from SNP 85010 to 85610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,159 DEBUG Processing 215/569 atomic regions from SNP 64414 to 65015 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,187 DEBUG Processing 287/606 atomic regions from SNP 86086 to 86687 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,209 DEBUG Processing 520/686 atomic regions from SNP 155840 to 156440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,246 DEBUG Processing 542/730 atomic regions from SNP 162578 to 163178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,304 DEBUG Processing 285/673 atomic regions from SNP 85310 to 85910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,388 DEBUG Processing 216/569 atomic regions from SNP 64715 to 65316 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,399 DEBUG Processing 288/606 atomic regions from SNP 86387 to 86988 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,461 DEBUG Processing 543/730 atomic regions from SNP 162878 to 163478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,465 DEBUG Processing 521/686 atomic regions from SNP 156140 to 156740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,556 DEBUG Processing 286/673 atomic regions from SNP 85610 to 86210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,611 DEBUG Processing 289/606 atomic regions from SNP 86688 to 87289 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,626 DEBUG Processing 217/569 atomic regions from SNP 65016 to 65617 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,680 DEBUG Processing 544/730 atomic regions from SNP 163178 to 163778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,725 DEBUG Processing 522/686 atomic regions from SNP 156440 to 157040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,809 DEBUG Processing 287/673 atomic regions from SNP 85910 to 86510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,809 DEBUG Processing 290/606 atomic regions from SNP 86989 to 87590 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,839 DEBUG Processing 218/569 atomic regions from SNP 65317 to 65918 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,897 DEBUG Processing 545/730 atomic regions from SNP 163478 to 164078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,972 DEBUG Processing 523/686 atomic regions from SNP 156740 to 157340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,004 DEBUG Processing 291/606 atomic regions from SNP 87290 to 87891 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,050 DEBUG Processing 288/673 atomic regions from SNP 86210 to 86810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,051 DEBUG Processing 219/569 atomic regions from SNP 65618 to 66219 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,114 DEBUG Processing 546/730 atomic regions from SNP 163778 to 164378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,195 DEBUG Processing 292/606 atomic regions from SNP 87591 to 88192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,202 DEBUG Processing 524/686 atomic regions from SNP 157040 to 157640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,269 DEBUG Processing 220/569 atomic regions from SNP 65919 to 66520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,280 DEBUG Processing 289/673 atomic regions from SNP 86510 to 87110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,336 DEBUG Processing 547/730 atomic regions from SNP 164078 to 164678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,393 DEBUG Processing 293/606 atomic regions from SNP 87892 to 88493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,433 DEBUG Processing 525/686 atomic regions from SNP 157340 to 157940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,483 DEBUG Processing 221/569 atomic regions from SNP 66220 to 66821 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,514 DEBUG Processing 290/673 atomic regions from SNP 86810 to 87410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,559 DEBUG Processing 548/730 atomic regions from SNP 164378 to 164978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,589 DEBUG Processing 294/606 atomic regions from SNP 88193 to 88794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,675 DEBUG Processing 526/686 atomic regions from SNP 157640 to 158240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,701 DEBUG Processing 222/569 atomic regions from SNP 66521 to 67122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,746 DEBUG Processing 291/673 atomic regions from SNP 87110 to 87710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,776 DEBUG Processing 549/730 atomic regions from SNP 164678 to 165278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,785 DEBUG Processing 295/606 atomic regions from SNP 88494 to 89095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,912 DEBUG Processing 223/569 atomic regions from SNP 66822 to 67423 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,921 DEBUG Processing 527/686 atomic regions from SNP 157940 to 158540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,971 DEBUG Processing 292/673 atomic regions from SNP 87410 to 88010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,983 DEBUG Processing 296/606 atomic regions from SNP 88795 to 89395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,992 DEBUG Processing 550/730 atomic regions from SNP 164978 to 165578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,125 DEBUG Processing 224/569 atomic regions from SNP 67123 to 67724 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,167 DEBUG Processing 528/686 atomic regions from SNP 158240 to 158840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,185 DEBUG Processing 297/606 atomic regions from SNP 89095 to 89695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,204 DEBUG Processing 293/673 atomic regions from SNP 87710 to 88310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,212 DEBUG Processing 551/730 atomic regions from SNP 165278 to 165878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,338 DEBUG Processing 225/569 atomic regions from SNP 67424 to 68025 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,383 DEBUG Processing 298/606 atomic regions from SNP 89395 to 89995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,404 DEBUG Processing 529/686 atomic regions from SNP 158540 to 159140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,427 DEBUG Processing 552/730 atomic regions from SNP 165578 to 166178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,439 DEBUG Processing 294/673 atomic regions from SNP 88010 to 88610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,533 DEBUG Processing 226/569 atomic regions from SNP 67725 to 68326 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,578 DEBUG Processing 299/606 atomic regions from SNP 89695 to 90295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,637 DEBUG Processing 530/686 atomic regions from SNP 158840 to 159440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,644 DEBUG Processing 553/730 atomic regions from SNP 165878 to 166478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,663 DEBUG Processing 295/673 atomic regions from SNP 88310 to 88910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,742 DEBUG Processing 227/569 atomic regions from SNP 68026 to 68627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,771 DEBUG Processing 300/606 atomic regions from SNP 89995 to 90595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,864 DEBUG Processing 554/730 atomic regions from SNP 166178 to 166778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,880 DEBUG Processing 531/686 atomic regions from SNP 159140 to 159740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,894 DEBUG Processing 296/673 atomic regions from SNP 88610 to 89210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,954 DEBUG Processing 228/569 atomic regions from SNP 68327 to 68928 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,963 DEBUG Processing 301/606 atomic regions from SNP 90295 to 90895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,084 DEBUG Processing 555/730 atomic regions from SNP 166478 to 167078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,123 DEBUG Processing 532/686 atomic regions from SNP 159440 to 160040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,125 DEBUG Processing 297/673 atomic regions from SNP 88910 to 89510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,159 DEBUG Processing 302/606 atomic regions from SNP 90595 to 91195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,173 DEBUG Processing 229/569 atomic regions from SNP 68628 to 69229 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,318 DEBUG Processing 556/730 atomic regions from SNP 166778 to 167378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,359 DEBUG Processing 298/673 atomic regions from SNP 89210 to 89810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,361 DEBUG Processing 303/606 atomic regions from SNP 90895 to 91495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,372 DEBUG Processing 533/686 atomic regions from SNP 159740 to 160340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,392 DEBUG Processing 230/569 atomic regions from SNP 68929 to 69530 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,559 DEBUG Processing 557/730 atomic regions from SNP 167078 to 167678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,562 DEBUG Processing 304/606 atomic regions from SNP 91195 to 91795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,591 DEBUG Processing 299/673 atomic regions from SNP 89510 to 90110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,616 DEBUG Processing 231/569 atomic regions from SNP 69230 to 69831 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,617 DEBUG Processing 534/686 atomic regions from SNP 160040 to 160640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,758 DEBUG Processing 305/606 atomic regions from SNP 91495 to 92095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,795 DEBUG Processing 558/730 atomic regions from SNP 167378 to 167978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,817 DEBUG Processing 300/673 atomic regions from SNP 89810 to 90410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,834 DEBUG Processing 232/569 atomic regions from SNP 69531 to 70132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,857 DEBUG Processing 535/686 atomic regions from SNP 160340 to 160940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,955 DEBUG Processing 306/606 atomic regions from SNP 91795 to 92395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,034 DEBUG Processing 559/730 atomic regions from SNP 167678 to 168278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,049 DEBUG Processing 301/673 atomic regions from SNP 90110 to 90710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,053 DEBUG Processing 233/569 atomic regions from SNP 69832 to 70433 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,108 DEBUG Processing 536/686 atomic regions from SNP 160640 to 161240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,158 DEBUG Processing 307/606 atomic regions from SNP 92095 to 92695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,264 DEBUG Processing 560/730 atomic regions from SNP 167978 to 168578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,276 DEBUG Processing 234/569 atomic regions from SNP 70133 to 70734 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,285 DEBUG Processing 302/673 atomic regions from SNP 90410 to 91010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,363 DEBUG Processing 537/686 atomic regions from SNP 160940 to 161540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,385 DEBUG Processing 308/606 atomic regions from SNP 92395 to 92995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,489 DEBUG Processing 235/569 atomic regions from SNP 70434 to 71035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,502 DEBUG Processing 561/730 atomic regions from SNP 168278 to 168878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,515 DEBUG Processing 303/673 atomic regions from SNP 90710 to 91310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,589 DEBUG Processing 309/606 atomic regions from SNP 92695 to 93295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,609 DEBUG Processing 538/686 atomic regions from SNP 161240 to 161840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,715 DEBUG Processing 236/569 atomic regions from SNP 70735 to 71336 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,742 DEBUG Processing 562/730 atomic regions from SNP 168578 to 169178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,757 DEBUG Processing 304/673 atomic regions from SNP 91010 to 91610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,792 DEBUG Processing 310/606 atomic regions from SNP 92995 to 93595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,862 DEBUG Processing 539/686 atomic regions from SNP 161540 to 162140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,933 DEBUG Processing 237/569 atomic regions from SNP 71036 to 71637 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,987 DEBUG Processing 563/730 atomic regions from SNP 168878 to 169478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,993 DEBUG Processing 305/673 atomic regions from SNP 91310 to 91910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,997 DEBUG Processing 311/606 atomic regions from SNP 93295 to 93895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,115 DEBUG Processing 540/686 atomic regions from SNP 161840 to 162440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,142 DEBUG Processing 238/569 atomic regions from SNP 71337 to 71938 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,196 DEBUG Processing 312/606 atomic regions from SNP 93595 to 94195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,218 DEBUG Processing 306/673 atomic regions from SNP 91610 to 92210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,230 DEBUG Processing 564/730 atomic regions from SNP 169178 to 169778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,355 DEBUG Processing 239/569 atomic regions from SNP 71638 to 72239 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,358 DEBUG Processing 541/686 atomic regions from SNP 162140 to 162740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,397 DEBUG Processing 313/606 atomic regions from SNP 93895 to 94495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,447 DEBUG Processing 307/673 atomic regions from SNP 91910 to 92510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,479 DEBUG Processing 565/730 atomic regions from SNP 169478 to 170078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,556 DEBUG Processing 240/569 atomic regions from SNP 71939 to 72540 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,585 DEBUG Processing 542/686 atomic regions from SNP 162440 to 163040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,590 DEBUG Processing 314/606 atomic regions from SNP 94195 to 94795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,689 DEBUG Processing 308/673 atomic regions from SNP 92210 to 92810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,724 DEBUG Processing 566/730 atomic regions from SNP 169778 to 170378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,770 DEBUG Processing 241/569 atomic regions from SNP 72240 to 72841 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,788 DEBUG Processing 315/606 atomic regions from SNP 94495 to 95095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,816 DEBUG Processing 543/686 atomic regions from SNP 162740 to 163340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,936 DEBUG Processing 309/673 atomic regions from SNP 92510 to 93110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,954 DEBUG Processing 567/730 atomic regions from SNP 170078 to 170678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,980 DEBUG Processing 242/569 atomic regions from SNP 72541 to 73142 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,982 DEBUG Processing 316/606 atomic regions from SNP 94795 to 95395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,040 DEBUG Processing 544/686 atomic regions from SNP 163040 to 163640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,167 DEBUG Processing 310/673 atomic regions from SNP 92810 to 93410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,180 DEBUG Processing 317/606 atomic regions from SNP 95095 to 95695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,193 DEBUG Processing 568/730 atomic regions from SNP 170378 to 170978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,194 DEBUG Processing 243/569 atomic regions from SNP 72842 to 73443 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,273 DEBUG Processing 545/686 atomic regions from SNP 163340 to 163940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,377 DEBUG Processing 318/606 atomic regions from SNP 95395 to 95995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,391 DEBUG Processing 311/673 atomic regions from SNP 93110 to 93710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,402 DEBUG Processing 244/569 atomic regions from SNP 73143 to 73744 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,414 DEBUG Processing 569/730 atomic regions from SNP 170678 to 171278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,496 DEBUG Processing 546/686 atomic regions from SNP 163640 to 164240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,573 DEBUG Processing 319/606 atomic regions from SNP 95695 to 96295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,611 DEBUG Processing 245/569 atomic regions from SNP 73444 to 74045 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,612 DEBUG Processing 312/673 atomic regions from SNP 93410 to 94010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,635 DEBUG Processing 570/730 atomic regions from SNP 170978 to 171578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,728 DEBUG Processing 547/686 atomic regions from SNP 163940 to 164540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,773 DEBUG Processing 320/606 atomic regions from SNP 95995 to 96595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,836 DEBUG Processing 246/569 atomic regions from SNP 73745 to 74346 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,846 DEBUG Processing 313/673 atomic regions from SNP 93710 to 94310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,855 DEBUG Processing 571/730 atomic regions from SNP 171278 to 171878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,970 DEBUG Processing 321/606 atomic regions from SNP 96295 to 96895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,970 DEBUG Processing 548/686 atomic regions from SNP 164240 to 164840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,054 DEBUG Processing 247/569 atomic regions from SNP 74046 to 74647 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,081 DEBUG Processing 314/673 atomic regions from SNP 94010 to 94610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,087 DEBUG Processing 572/730 atomic regions from SNP 171578 to 172178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,168 DEBUG Processing 322/606 atomic regions from SNP 96595 to 97195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,223 DEBUG Processing 549/686 atomic regions from SNP 164540 to 165140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,267 DEBUG Processing 248/569 atomic regions from SNP 74347 to 74948 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,304 DEBUG Processing 315/673 atomic regions from SNP 94310 to 94910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,322 DEBUG Processing 573/730 atomic regions from SNP 171878 to 172478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,390 DEBUG Processing 323/606 atomic regions from SNP 96895 to 97495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,476 DEBUG Processing 550/686 atomic regions from SNP 164840 to 165440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,483 DEBUG Processing 249/569 atomic regions from SNP 74648 to 75249 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,527 DEBUG Processing 316/673 atomic regions from SNP 94610 to 95210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,563 DEBUG Processing 574/730 atomic regions from SNP 172178 to 172778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,619 DEBUG Processing 324/606 atomic regions from SNP 97195 to 97795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,707 DEBUG Processing 250/569 atomic regions from SNP 74949 to 75550 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,724 DEBUG Processing 551/686 atomic regions from SNP 165140 to 165740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,755 DEBUG Processing 317/673 atomic regions from SNP 94910 to 95510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,806 DEBUG Processing 575/730 atomic regions from SNP 172478 to 173078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,847 DEBUG Processing 325/606 atomic regions from SNP 97495 to 98095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,918 DEBUG Processing 251/569 atomic regions from SNP 75250 to 75851 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,999 DEBUG Processing 552/686 atomic regions from SNP 165440 to 166040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,006 DEBUG Processing 318/673 atomic regions from SNP 95210 to 95810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,187 DEBUG Processing 576/730 atomic regions from SNP 172778 to 173378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,377 DEBUG Processing 326/606 atomic regions from SNP 97795 to 98395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,448 DEBUG Processing 252/569 atomic regions from SNP 75551 to 76152 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,476 DEBUG Processing 319/673 atomic regions from SNP 95510 to 96110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,503 DEBUG Processing 553/686 atomic regions from SNP 165740 to 166340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,551 DEBUG Processing 577/730 atomic regions from SNP 173078 to 173678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,585 DEBUG Processing 327/606 atomic regions from SNP 98095 to 98695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,655 DEBUG Processing 253/569 atomic regions from SNP 75852 to 76453 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,699 DEBUG Processing 320/673 atomic regions from SNP 95810 to 96410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,742 DEBUG Processing 554/686 atomic regions from SNP 166040 to 166640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,793 DEBUG Processing 578/730 atomic regions from SNP 173378 to 173978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,801 DEBUG Processing 328/606 atomic regions from SNP 98395 to 98995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,857 DEBUG Processing 254/569 atomic regions from SNP 76153 to 76754 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,918 DEBUG Processing 321/673 atomic regions from SNP 96110 to 96710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,988 DEBUG Processing 555/686 atomic regions from SNP 166340 to 166940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,029 DEBUG Processing 329/606 atomic regions from SNP 98695 to 99295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,042 DEBUG Processing 579/730 atomic regions from SNP 173678 to 174278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,059 DEBUG Processing 255/569 atomic regions from SNP 76454 to 77055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,134 DEBUG Processing 322/673 atomic regions from SNP 96410 to 97010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,224 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:56:56,244 DEBUG Processing 556/686 atomic regions from SNP 166640 to 167240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,251 DEBUG Processing 330/606 atomic regions from SNP 98995 to 99595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,260 DEBUG Processing 256/569 atomic regions from SNP 76755 to 77356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,280 DEBUG Processing 580/730 atomic regions from SNP 173978 to 174578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,357 DEBUG Processing 323/673 atomic regions from SNP 96710 to 97310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,472 DEBUG Processing 257/569 atomic regions from SNP 77056 to 77657 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,478 DEBUG Processing 331/606 atomic regions from SNP 99295 to 99895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,498 DEBUG Processing 557/686 atomic regions from SNP 166940 to 167540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,513 DEBUG Processing 581/730 atomic regions from SNP 174278 to 174878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,588 DEBUG Processing 324/673 atomic regions from SNP 97010 to 97610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,687 DEBUG Processing 258/569 atomic regions from SNP 77357 to 77958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,712 DEBUG Processing 332/606 atomic regions from SNP 99595 to 100195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,744 DEBUG Processing 558/686 atomic regions from SNP 167240 to 167840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,749 DEBUG Processing 582/730 atomic regions from SNP 174578 to 175178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,810 DEBUG Processing 325/673 atomic regions from SNP 97310 to 97910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,896 DEBUG Processing 259/569 atomic regions from SNP 77658 to 78259 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,934 DEBUG Processing 333/606 atomic regions from SNP 99895 to 100495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,987 DEBUG Processing 583/730 atomic regions from SNP 174878 to 175478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,988 DEBUG Processing 559/686 atomic regions from SNP 167540 to 168140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,031 DEBUG Processing 326/673 atomic regions from SNP 97610 to 98210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,104 DEBUG Processing 260/569 atomic regions from SNP 77959 to 78560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,154 DEBUG Processing 334/606 atomic regions from SNP 100195 to 100795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,224 DEBUG Processing 584/730 atomic regions from SNP 175178 to 175778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,228 DEBUG Processing 560/686 atomic regions from SNP 167840 to 168440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,250 DEBUG Processing 327/673 atomic regions from SNP 97910 to 98510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,308 DEBUG Processing 261/569 atomic regions from SNP 78260 to 78861 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,353 DEBUG Processing 335/606 atomic regions from SNP 100495 to 101095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,458 DEBUG Processing 328/673 atomic regions from SNP 98210 to 98810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,465 DEBUG Processing 561/686 atomic regions from SNP 168140 to 168740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,466 DEBUG Processing 585/730 atomic regions from SNP 175478 to 176078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,508 DEBUG Processing 262/569 atomic regions from SNP 78561 to 79162 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,566 DEBUG Processing 336/606 atomic regions from SNP 100795 to 101395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,663 DEBUG Processing 329/673 atomic regions from SNP 98510 to 99110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,702 DEBUG Processing 562/686 atomic regions from SNP 168440 to 169040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,706 DEBUG Processing 263/569 atomic regions from SNP 78862 to 79463 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,721 DEBUG Processing 586/730 atomic regions from SNP 175778 to 176378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,756 DEBUG Processing 337/606 atomic regions from SNP 101095 to 101695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,873 DEBUG Processing 330/673 atomic regions from SNP 98810 to 99410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,908 DEBUG Processing 264/569 atomic regions from SNP 79163 to 79764 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,958 DEBUG Processing 563/686 atomic regions from SNP 168740 to 169340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,977 DEBUG Processing 338/606 atomic regions from SNP 101395 to 101995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,986 DEBUG Processing 587/730 atomic regions from SNP 176078 to 176678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,356 DEBUG Processing 331/673 atomic regions from SNP 99110 to 99710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,369 DEBUG Processing 265/569 atomic regions from SNP 79464 to 80065 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,397 DEBUG Processing 339/606 atomic regions from SNP 101695 to 102295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,401 DEBUG Processing 588/730 atomic regions from SNP 176378 to 176978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,407 DEBUG Processing 564/686 atomic regions from SNP 169040 to 169640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,803 DEBUG Processing 332/673 atomic regions from SNP 99410 to 100010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,832 DEBUG Processing 266/569 atomic regions from SNP 79765 to 80366 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,848 DEBUG Processing 340/606 atomic regions from SNP 101995 to 102595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,854 DEBUG Processing 589/730 atomic regions from SNP 176678 to 177278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,866 DEBUG Processing 565/686 atomic regions from SNP 169340 to 169940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,012 DEBUG Processing 333/673 atomic regions from SNP 99710 to 100310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,034 DEBUG Processing 267/569 atomic regions from SNP 80066 to 80667 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,042 DEBUG Processing 341/606 atomic regions from SNP 102295 to 102895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,063 DEBUG Processing 590/730 atomic regions from SNP 176978 to 177578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,089 DEBUG Processing 566/686 atomic regions from SNP 169640 to 170240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,230 DEBUG Processing 334/673 atomic regions from SNP 100010 to 100610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,242 DEBUG Processing 268/569 atomic regions from SNP 80367 to 80968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,244 DEBUG Processing 342/606 atomic regions from SNP 102595 to 103195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,276 DEBUG Processing 591/730 atomic regions from SNP 177278 to 177878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,332 DEBUG Processing 567/686 atomic regions from SNP 169940 to 170540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,448 DEBUG Processing 343/606 atomic regions from SNP 102895 to 103495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,450 DEBUG Processing 269/569 atomic regions from SNP 80668 to 81268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,451 DEBUG Processing 335/673 atomic regions from SNP 100310 to 100910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,490 DEBUG Processing 592/730 atomic regions from SNP 177578 to 178178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,567 DEBUG Processing 568/686 atomic regions from SNP 170240 to 170840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,647 DEBUG Processing 344/606 atomic regions from SNP 103195 to 103795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,657 DEBUG Processing 270/569 atomic regions from SNP 80968 to 81568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,671 DEBUG Processing 336/673 atomic regions from SNP 100610 to 101210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,701 DEBUG Processing 593/730 atomic regions from SNP 177878 to 178478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,804 DEBUG Processing 569/686 atomic regions from SNP 170540 to 171140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,847 DEBUG Processing 345/606 atomic regions from SNP 103495 to 104095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,867 DEBUG Processing 271/569 atomic regions from SNP 81268 to 81868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,896 DEBUG Processing 337/673 atomic regions from SNP 100910 to 101510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,922 DEBUG Processing 594/730 atomic regions from SNP 178178 to 178778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,037 DEBUG Processing 570/686 atomic regions from SNP 170840 to 171440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,041 DEBUG Processing 346/606 atomic regions from SNP 103795 to 104395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,075 DEBUG Processing 272/569 atomic regions from SNP 81568 to 82168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,113 DEBUG Processing 338/673 atomic regions from SNP 101210 to 101810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,156 DEBUG Processing 595/730 atomic regions from SNP 178478 to 179078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,231 DEBUG Processing 347/606 atomic regions from SNP 104095 to 104695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,274 DEBUG Processing 571/686 atomic regions from SNP 171140 to 171740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,277 DEBUG Processing 273/569 atomic regions from SNP 81868 to 82468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,325 DEBUG Processing 339/673 atomic regions from SNP 101510 to 102110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,385 DEBUG Processing 596/730 atomic regions from SNP 178778 to 179378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,425 DEBUG Processing 348/606 atomic regions from SNP 104395 to 104995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,485 DEBUG Processing 274/569 atomic regions from SNP 82168 to 82768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,527 DEBUG Processing 572/686 atomic regions from SNP 171440 to 172040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,545 DEBUG Processing 340/673 atomic regions from SNP 101810 to 102410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,619 DEBUG Processing 349/606 atomic regions from SNP 104695 to 105295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,619 DEBUG Processing 597/730 atomic regions from SNP 179078 to 179678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,692 DEBUG Processing 275/569 atomic regions from SNP 82468 to 83068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,756 DEBUG Processing 573/686 atomic regions from SNP 171740 to 172340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,761 DEBUG Processing 341/673 atomic regions from SNP 102110 to 102710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,825 DEBUG Processing 350/606 atomic regions from SNP 104995 to 105595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,843 DEBUG Processing 598/730 atomic regions from SNP 179378 to 179978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,885 DEBUG Processing 276/569 atomic regions from SNP 82768 to 83368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,972 DEBUG Processing 574/686 atomic regions from SNP 172040 to 172640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,976 DEBUG Processing 342/673 atomic regions from SNP 102410 to 103010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,030 DEBUG Processing 351/606 atomic regions from SNP 105295 to 105895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,074 DEBUG Processing 599/730 atomic regions from SNP 179678 to 180278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,082 DEBUG Processing 277/569 atomic regions from SNP 83068 to 83668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,190 DEBUG Processing 575/686 atomic regions from SNP 172340 to 172940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,195 DEBUG Processing 343/673 atomic regions from SNP 102710 to 103310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,222 DEBUG Processing 352/606 atomic regions from SNP 105595 to 106195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,281 DEBUG Processing 278/569 atomic regions from SNP 83368 to 83968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,308 DEBUG Processing 600/730 atomic regions from SNP 179978 to 180578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,413 DEBUG Processing 576/686 atomic regions from SNP 172640 to 173240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,417 DEBUG Processing 344/673 atomic regions from SNP 103010 to 103610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,419 DEBUG Processing 353/606 atomic regions from SNP 105895 to 106495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,488 DEBUG Processing 279/569 atomic regions from SNP 83668 to 84268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,551 DEBUG Processing 601/730 atomic regions from SNP 180278 to 180878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,612 DEBUG Processing 354/606 atomic regions from SNP 106195 to 106795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,639 DEBUG Processing 345/673 atomic regions from SNP 103310 to 103910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,649 DEBUG Processing 577/686 atomic regions from SNP 172940 to 173540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,691 DEBUG Processing 280/569 atomic regions from SNP 83968 to 84568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,789 DEBUG Processing 602/730 atomic regions from SNP 180578 to 181178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,806 DEBUG Processing 355/606 atomic regions from SNP 106495 to 107095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,865 DEBUG Processing 346/673 atomic regions from SNP 103610 to 104210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,895 DEBUG Processing 578/686 atomic regions from SNP 173240 to 173840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,903 DEBUG Processing 281/569 atomic regions from SNP 84268 to 84868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,001 DEBUG Processing 356/606 atomic regions from SNP 106795 to 107395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,027 DEBUG Processing 603/730 atomic regions from SNP 180878 to 181478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,087 DEBUG Processing 347/673 atomic regions from SNP 103910 to 104510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,107 DEBUG Processing 282/569 atomic regions from SNP 84568 to 85168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,114 DEBUG Processing 579/686 atomic regions from SNP 173540 to 174140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,197 DEBUG Processing 357/606 atomic regions from SNP 107095 to 107695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,265 DEBUG Processing 604/730 atomic regions from SNP 181178 to 181778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,317 DEBUG Processing 348/673 atomic regions from SNP 104210 to 104810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,343 DEBUG Processing 283/569 atomic regions from SNP 84868 to 85468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,344 DEBUG Processing 580/686 atomic regions from SNP 173840 to 174440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,398 DEBUG Processing 358/606 atomic regions from SNP 107395 to 107995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,493 DEBUG Processing 605/730 atomic regions from SNP 181478 to 182078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,541 DEBUG Processing 349/673 atomic regions from SNP 104510 to 105110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,562 DEBUG Processing 284/569 atomic regions from SNP 85168 to 85768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,569 DEBUG Processing 581/686 atomic regions from SNP 174140 to 174740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,591 DEBUG Processing 359/606 atomic regions from SNP 107695 to 108295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,730 DEBUG Processing 606/730 atomic regions from SNP 181778 to 182378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,766 DEBUG Processing 350/673 atomic regions from SNP 104810 to 105410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,774 DEBUG Processing 285/569 atomic regions from SNP 85468 to 86068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,789 DEBUG Processing 360/606 atomic regions from SNP 107995 to 108595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,796 DEBUG Processing 582/686 atomic regions from SNP 174440 to 175040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,977 DEBUG Processing 286/569 atomic regions from SNP 85768 to 86368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,982 DEBUG Processing 607/730 atomic regions from SNP 182078 to 182678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,985 DEBUG Processing 351/673 atomic regions from SNP 105110 to 105710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,996 DEBUG Processing 361/606 atomic regions from SNP 108295 to 108895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,029 DEBUG Processing 583/686 atomic regions from SNP 174740 to 175340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,179 DEBUG Processing 287/569 atomic regions from SNP 86068 to 86668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,196 DEBUG Processing 352/673 atomic regions from SNP 105410 to 106010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,207 DEBUG Processing 362/606 atomic regions from SNP 108595 to 109195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,226 DEBUG Processing 608/730 atomic regions from SNP 182378 to 182978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,255 DEBUG Processing 584/686 atomic regions from SNP 175040 to 175640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,380 DEBUG Processing 288/569 atomic regions from SNP 86368 to 86968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,409 DEBUG Processing 353/673 atomic regions from SNP 105710 to 106310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,419 DEBUG Processing 363/606 atomic regions from SNP 108895 to 109495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,457 DEBUG Processing 609/730 atomic regions from SNP 182678 to 183278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,463 DEBUG Processing 585/686 atomic regions from SNP 175340 to 175940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,577 DEBUG Processing 289/569 atomic regions from SNP 86668 to 87268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,618 DEBUG Processing 354/673 atomic regions from SNP 106010 to 106610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,631 DEBUG Processing 364/606 atomic regions from SNP 109195 to 109795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,673 DEBUG Processing 586/686 atomic regions from SNP 175640 to 176240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,678 DEBUG Processing 610/730 atomic regions from SNP 182978 to 183578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,771 DEBUG Processing 290/569 atomic regions from SNP 86968 to 87568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,825 DEBUG Processing 365/606 atomic regions from SNP 109495 to 110095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,827 DEBUG Processing 355/673 atomic regions from SNP 106310 to 106910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,885 DEBUG Processing 587/686 atomic regions from SNP 175940 to 176540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,912 DEBUG Processing 611/730 atomic regions from SNP 183278 to 183878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,972 DEBUG Processing 291/569 atomic regions from SNP 87268 to 87868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,019 DEBUG Processing 366/606 atomic regions from SNP 109795 to 110395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,040 DEBUG Processing 356/673 atomic regions from SNP 106610 to 107210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,095 DEBUG Processing 588/686 atomic regions from SNP 176240 to 176840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,146 DEBUG Processing 612/730 atomic regions from SNP 183578 to 184178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,169 DEBUG Processing 292/569 atomic regions from SNP 87568 to 88168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,214 DEBUG Processing 367/606 atomic regions from SNP 110095 to 110695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,254 DEBUG Processing 357/673 atomic regions from SNP 106910 to 107510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,317 DEBUG Processing 589/686 atomic regions from SNP 176540 to 177140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,363 DEBUG Processing 293/569 atomic regions from SNP 87868 to 88468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,386 DEBUG Processing 613/730 atomic regions from SNP 183878 to 184478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,405 DEBUG Processing 368/606 atomic regions from SNP 110395 to 110995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,457 DEBUG Processing 358/673 atomic regions from SNP 107210 to 107810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,543 DEBUG Processing 590/686 atomic regions from SNP 176840 to 177440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,556 DEBUG Processing 294/569 atomic regions from SNP 88168 to 88768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,599 DEBUG Processing 369/606 atomic regions from SNP 110695 to 111295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,612 DEBUG Processing 614/730 atomic regions from SNP 184178 to 184778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,662 DEBUG Processing 359/673 atomic regions from SNP 107510 to 108110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,758 DEBUG Processing 295/569 atomic regions from SNP 88468 to 89068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,780 DEBUG Processing 591/686 atomic regions from SNP 177140 to 177740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,794 DEBUG Processing 370/606 atomic regions from SNP 110995 to 111595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,829 DEBUG Processing 615/730 atomic regions from SNP 184478 to 185078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,870 DEBUG Processing 360/673 atomic regions from SNP 107810 to 108410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,955 DEBUG Processing 296/569 atomic regions from SNP 88768 to 89368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,985 DEBUG Processing 371/606 atomic regions from SNP 111295 to 111895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,015 DEBUG Processing 592/686 atomic regions from SNP 177440 to 178040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,033 DEBUG Processing 616/730 atomic regions from SNP 184778 to 185378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,076 DEBUG Processing 361/673 atomic regions from SNP 108110 to 108710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,157 DEBUG Processing 297/569 atomic regions from SNP 89068 to 89668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,179 DEBUG Processing 372/606 atomic regions from SNP 111595 to 112195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,230 DEBUG Processing 593/686 atomic regions from SNP 177740 to 178340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,256 DEBUG Processing 617/730 atomic regions from SNP 185078 to 185678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,291 DEBUG Processing 362/673 atomic regions from SNP 108410 to 109010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,355 DEBUG Processing 298/569 atomic regions from SNP 89368 to 89968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,374 DEBUG Processing 373/606 atomic regions from SNP 111895 to 112495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,439 DEBUG Processing 594/686 atomic regions from SNP 178040 to 178640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,473 DEBUG Processing 618/730 atomic regions from SNP 185378 to 185978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,499 DEBUG Processing 363/673 atomic regions from SNP 108710 to 109310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,553 DEBUG Processing 299/569 atomic regions from SNP 89668 to 90268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,569 DEBUG Processing 374/606 atomic regions from SNP 112195 to 112795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,652 DEBUG Processing 595/686 atomic regions from SNP 178340 to 178940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,690 DEBUG Processing 619/730 atomic regions from SNP 185678 to 186278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,705 DEBUG Processing 364/673 atomic regions from SNP 109010 to 109610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,748 DEBUG Processing 300/569 atomic regions from SNP 89968 to 90568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,765 DEBUG Processing 375/606 atomic regions from SNP 112495 to 113095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,868 DEBUG Processing 596/686 atomic regions from SNP 178640 to 179240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,913 DEBUG Processing 365/673 atomic regions from SNP 109310 to 109910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,914 DEBUG Processing 620/730 atomic regions from SNP 185978 to 186578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,941 DEBUG Processing 301/569 atomic regions from SNP 90268 to 90868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,959 DEBUG Processing 376/606 atomic regions from SNP 112795 to 113395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,088 DEBUG Processing 597/686 atomic regions from SNP 178940 to 179540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,127 DEBUG Processing 366/673 atomic regions from SNP 109610 to 110210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,131 DEBUG Processing 621/730 atomic regions from SNP 186278 to 186878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,138 DEBUG Processing 302/569 atomic regions from SNP 90568 to 91168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,175 DEBUG Processing 377/606 atomic regions from SNP 113095 to 113695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,305 DEBUG Processing 598/686 atomic regions from SNP 179240 to 179840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,340 DEBUG Processing 303/569 atomic regions from SNP 90868 to 91468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,363 DEBUG Processing 367/673 atomic regions from SNP 109910 to 110510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,364 DEBUG Processing 622/730 atomic regions from SNP 186578 to 187178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,405 DEBUG Processing 378/606 atomic regions from SNP 113395 to 113995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,514 DEBUG Processing 599/686 atomic regions from SNP 179540 to 180140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,540 DEBUG Processing 304/569 atomic regions from SNP 91168 to 91768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,580 DEBUG Processing 623/730 atomic regions from SNP 186878 to 187478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,599 DEBUG Processing 368/673 atomic regions from SNP 110210 to 110810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,626 DEBUG Processing 379/606 atomic regions from SNP 113695 to 114295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,735 DEBUG Processing 600/686 atomic regions from SNP 179840 to 180440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,744 DEBUG Processing 305/569 atomic regions from SNP 91468 to 92068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,796 DEBUG Processing 624/730 atomic regions from SNP 187178 to 187778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,836 DEBUG Processing 369/673 atomic regions from SNP 110510 to 111110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,855 DEBUG Processing 380/606 atomic regions from SNP 113995 to 114595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,958 DEBUG Processing 306/569 atomic regions from SNP 91768 to 92368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,958 DEBUG Processing 601/686 atomic regions from SNP 180140 to 180740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,012 DEBUG Processing 625/730 atomic regions from SNP 187478 to 188078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,060 DEBUG Processing 381/606 atomic regions from SNP 114295 to 114895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,065 DEBUG Processing 370/673 atomic regions from SNP 110810 to 111410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,170 DEBUG Processing 307/569 atomic regions from SNP 92068 to 92668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,184 DEBUG Processing 602/686 atomic regions from SNP 180440 to 181040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,258 DEBUG Processing 626/730 atomic regions from SNP 187778 to 188378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,263 DEBUG Processing 382/606 atomic regions from SNP 114595 to 115195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,306 DEBUG Processing 371/673 atomic regions from SNP 111110 to 111710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,376 DEBUG Processing 308/569 atomic regions from SNP 92368 to 92968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,404 DEBUG Processing 603/686 atomic regions from SNP 180740 to 181340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,456 DEBUG Processing 383/606 atomic regions from SNP 114895 to 115495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,493 DEBUG Processing 627/730 atomic regions from SNP 188078 to 188678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,533 DEBUG Processing 372/673 atomic regions from SNP 111410 to 112010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,610 DEBUG Processing 309/569 atomic regions from SNP 92668 to 93268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,673 DEBUG Processing 604/686 atomic regions from SNP 181040 to 181640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,820 DEBUG Processing 384/606 atomic regions from SNP 115195 to 115795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,133 DEBUG Processing 628/730 atomic regions from SNP 188378 to 188978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,139 DEBUG Processing 373/673 atomic regions from SNP 111710 to 112310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,190 DEBUG Processing 310/569 atomic regions from SNP 92968 to 93568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,210 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:57:08,211 DEBUG chr17: Signal quantile: 0.995. signal threshold: 27. Best RMSEA: 0.033 2025-01-31 09:57:08,246 DEBUG Processing 605/686 atomic regions from SNP 181340 to 181940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,247 DEBUG Processing 385/606 atomic regions from SNP 115495 to 116095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,352 DEBUG Processing 629/730 atomic regions from SNP 188678 to 189278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,356 DEBUG Processing 374/673 atomic regions from SNP 112010 to 112610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,397 DEBUG Processing 311/569 atomic regions from SNP 93268 to 93868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,454 DEBUG Processing 386/606 atomic regions from SNP 115795 to 116395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,459 DEBUG Processing 606/686 atomic regions from SNP 181640 to 182240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,557 DEBUG Processing 375/673 atomic regions from SNP 112310 to 112910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,567 DEBUG Processing 630/730 atomic regions from SNP 188978 to 189578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,594 DEBUG Processing 312/569 atomic regions from SNP 93568 to 94168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,657 DEBUG Processing 387/606 atomic regions from SNP 116095 to 116695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,677 DEBUG Processing 607/686 atomic regions from SNP 181940 to 182540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,759 DEBUG Processing 376/673 atomic regions from SNP 112610 to 113210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,801 DEBUG Processing 313/569 atomic regions from SNP 93868 to 94468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,803 DEBUG Processing 631/730 atomic regions from SNP 189278 to 189878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,860 DEBUG Processing 388/606 atomic regions from SNP 116395 to 116995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,915 DEBUG Processing 608/686 atomic regions from SNP 182240 to 182840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,999 DEBUG Processing 377/673 atomic regions from SNP 112910 to 113510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,083 DEBUG Processing 314/569 atomic regions from SNP 94168 to 94768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,127 DEBUG Processing 389/606 atomic regions from SNP 116695 to 117295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,134 DEBUG Processing 632/730 atomic regions from SNP 189578 to 190178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,202 DEBUG Processing 609/686 atomic regions from SNP 182540 to 183140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,213 DEBUG Processing 378/673 atomic regions from SNP 113210 to 113810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,286 DEBUG Processing 315/569 atomic regions from SNP 94468 to 95068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,327 DEBUG Processing 390/606 atomic regions from SNP 116995 to 117595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,376 DEBUG Processing 633/730 atomic regions from SNP 189878 to 190478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,438 DEBUG Processing 610/686 atomic regions from SNP 182840 to 183440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,445 DEBUG Processing 379/673 atomic regions from SNP 113510 to 114110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,494 DEBUG Processing 316/569 atomic regions from SNP 94768 to 95368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,531 DEBUG Processing 391/606 atomic regions from SNP 117295 to 117895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,622 DEBUG Processing 634/730 atomic regions from SNP 190178 to 190778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,660 DEBUG Processing 380/673 atomic regions from SNP 113810 to 114410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,673 DEBUG Processing 611/686 atomic regions from SNP 183140 to 183740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,702 DEBUG Processing 317/569 atomic regions from SNP 95068 to 95668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,726 DEBUG Processing 392/606 atomic regions from SNP 117595 to 118195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,862 DEBUG Processing 635/730 atomic regions from SNP 190478 to 191078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,867 DEBUG Processing 381/673 atomic regions from SNP 114110 to 114710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,892 DEBUG Processing 612/686 atomic regions from SNP 183440 to 184040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,913 DEBUG Processing 318/569 atomic regions from SNP 95368 to 95968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,919 DEBUG Processing 393/606 atomic regions from SNP 117895 to 118495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,074 DEBUG Processing 382/673 atomic regions from SNP 114410 to 115010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,097 DEBUG chr17 total SNP count: 163071 2025-01-31 09:57:10,097 DEBUG chr17 length: 94987271 2025-01-31 09:57:10,097 DEBUG ----------------------------------------- 2025-01-31 09:57:10,097 INFO Processing SNPs in chr17 2025-01-31 09:57:10,103 DEBUG Processing 636/730 atomic regions from SNP 190778 to 191378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,106 DEBUG Processing 613/686 atomic regions from SNP 183740 to 184340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,117 DEBUG Processing 394/606 atomic regions from SNP 118195 to 118795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,141 DEBUG Processing 319/569 atomic regions from SNP 95668 to 96268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,255 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 163071)] 2025-01-31 09:57:10,278 DEBUG Processing 383/673 atomic regions from SNP 114710 to 115310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,313 DEBUG Processing 395/606 atomic regions from SNP 118495 to 119095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,317 DEBUG Processing 614/686 atomic regions from SNP 184040 to 184640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,332 DEBUG Processing 637/730 atomic regions from SNP 191078 to 191678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,342 DEBUG Processing 320/569 atomic regions from SNP 95968 to 96568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,364 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:57:10,493 DEBUG Processing 384/673 atomic regions from SNP 115010 to 115610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,507 DEBUG Processing 396/606 atomic regions from SNP 118795 to 119395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,531 DEBUG Processing 615/686 atomic regions from SNP 184340 to 184940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,534 DEBUG Processing 321/569 atomic regions from SNP 96268 to 96868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,557 DEBUG Processing 638/730 atomic regions from SNP 191378 to 191978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,697 DEBUG Processing 397/606 atomic regions from SNP 119095 to 119695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,708 DEBUG Processing 385/673 atomic regions from SNP 115310 to 115910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,726 DEBUG Processing 322/569 atomic regions from SNP 96568 to 97168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,757 DEBUG Processing 616/686 atomic regions from SNP 184640 to 185240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,772 DEBUG Processing 639/730 atomic regions from SNP 191678 to 192278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,889 DEBUG Processing 398/606 atomic regions from SNP 119395 to 119995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,920 DEBUG Processing 323/569 atomic regions from SNP 96868 to 97468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,922 DEBUG Processing 386/673 atomic regions from SNP 115610 to 116210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,987 DEBUG Processing 617/686 atomic regions from SNP 184940 to 185540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,994 DEBUG Processing 640/730 atomic regions from SNP 191978 to 192578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,077 DEBUG Processing 399/606 atomic regions from SNP 119695 to 120295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,111 DEBUG Processing 324/569 atomic regions from SNP 97168 to 97768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,121 DEBUG Processing 387/673 atomic regions from SNP 115910 to 116510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,211 DEBUG Processing 618/686 atomic regions from SNP 185240 to 185840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,216 DEBUG Processing 641/730 atomic regions from SNP 192278 to 192878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,268 DEBUG Processing 400/606 atomic regions from SNP 119995 to 120595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,302 DEBUG Processing 325/569 atomic regions from SNP 97468 to 98068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,321 DEBUG Processing 388/673 atomic regions from SNP 116210 to 116810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,411 DEBUG Processing 619/686 atomic regions from SNP 185540 to 186140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,425 DEBUG Processing 642/730 atomic regions from SNP 192578 to 193178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,456 DEBUG Processing 401/606 atomic regions from SNP 120295 to 120895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,490 DEBUG Processing 326/569 atomic regions from SNP 97768 to 98368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,526 DEBUG Processing 389/673 atomic regions from SNP 116510 to 117110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,610 DEBUG Processing 620/686 atomic regions from SNP 185840 to 186440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,628 DEBUG Processing 643/730 atomic regions from SNP 192878 to 193478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,642 DEBUG Processing 402/606 atomic regions from SNP 120595 to 121195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,676 DEBUG Processing 327/569 atomic regions from SNP 98068 to 98668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,732 DEBUG Processing 390/673 atomic regions from SNP 116810 to 117410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,815 DEBUG Processing 621/686 atomic regions from SNP 186140 to 186740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,830 DEBUG Processing 403/606 atomic regions from SNP 120895 to 121495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,834 DEBUG Processing 644/730 atomic regions from SNP 193178 to 193778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,866 DEBUG Processing 328/569 atomic regions from SNP 98368 to 98968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,934 DEBUG Processing 391/673 atomic regions from SNP 117110 to 117710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,023 DEBUG Processing 404/606 atomic regions from SNP 121195 to 121795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,031 DEBUG Processing 622/686 atomic regions from SNP 186440 to 187040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,053 DEBUG Processing 645/730 atomic regions from SNP 193478 to 194078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,067 DEBUG Processing 329/569 atomic regions from SNP 98668 to 99268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,131 DEBUG Processing 392/673 atomic regions from SNP 117410 to 118010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,212 DEBUG Processing 405/606 atomic regions from SNP 121495 to 122095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,244 DEBUG Processing 623/686 atomic regions from SNP 186740 to 187340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,263 DEBUG Processing 330/569 atomic regions from SNP 98968 to 99568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,274 DEBUG Processing 646/730 atomic regions from SNP 193778 to 194378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,326 DEBUG Processing 393/673 atomic regions from SNP 117710 to 118310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,401 DEBUG Processing 406/606 atomic regions from SNP 121795 to 122395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,454 DEBUG Processing 624/686 atomic regions from SNP 187040 to 187640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,458 DEBUG Processing 331/569 atomic regions from SNP 99268 to 99868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,482 DEBUG Processing 647/730 atomic regions from SNP 194078 to 194678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,538 DEBUG Processing 394/673 atomic regions from SNP 118010 to 118610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,591 DEBUG Processing 407/606 atomic regions from SNP 122095 to 122695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,651 DEBUG Processing 332/569 atomic regions from SNP 99568 to 100168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,669 DEBUG Processing 625/686 atomic regions from SNP 187340 to 187940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,689 DEBUG Processing 648/730 atomic regions from SNP 194378 to 194978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,740 DEBUG Processing 395/673 atomic regions from SNP 118310 to 118910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,780 DEBUG Processing 408/606 atomic regions from SNP 122395 to 122995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,843 DEBUG Processing 333/569 atomic regions from SNP 99868 to 100468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,888 DEBUG Processing 626/686 atomic regions from SNP 187640 to 188240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,890 DEBUG Processing 649/730 atomic regions from SNP 194678 to 195278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,941 DEBUG Processing 396/673 atomic regions from SNP 118610 to 119210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,973 DEBUG Processing 409/606 atomic regions from SNP 122695 to 123295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,058 DEBUG Processing 334/569 atomic regions from SNP 100168 to 100768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,095 DEBUG Processing 650/730 atomic regions from SNP 194978 to 195578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,125 DEBUG Processing 627/686 atomic regions from SNP 187940 to 188540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,150 DEBUG Processing 397/673 atomic regions from SNP 118910 to 119510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,168 DEBUG Processing 410/606 atomic regions from SNP 122995 to 123595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,255 DEBUG Processing 335/569 atomic regions from SNP 100468 to 101068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,301 DEBUG Processing 651/730 atomic regions from SNP 195278 to 195878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,350 DEBUG Processing 628/686 atomic regions from SNP 188240 to 188840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,354 DEBUG Processing 398/673 atomic regions from SNP 119210 to 119810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,357 DEBUG Processing 411/606 atomic regions from SNP 123295 to 123895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,449 DEBUG Processing 336/569 atomic regions from SNP 100768 to 101368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,524 DEBUG Processing 652/730 atomic regions from SNP 195578 to 196178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,550 DEBUG Processing 412/606 atomic regions from SNP 123595 to 124195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,551 DEBUG Processing 399/673 atomic regions from SNP 119510 to 120110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,560 DEBUG Processing 629/686 atomic regions from SNP 188540 to 189140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,646 DEBUG Processing 337/569 atomic regions from SNP 101068 to 101668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,750 DEBUG Processing 400/673 atomic regions from SNP 119810 to 120410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,752 DEBUG Processing 413/606 atomic regions from SNP 123895 to 124495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,760 DEBUG Processing 653/730 atomic regions from SNP 195878 to 196478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,772 DEBUG Processing 630/686 atomic regions from SNP 188840 to 189440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,844 DEBUG Processing 338/569 atomic regions from SNP 101368 to 101968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,946 DEBUG Processing 401/673 atomic regions from SNP 120110 to 120710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,953 DEBUG Processing 414/606 atomic regions from SNP 124195 to 124795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,982 DEBUG Processing 631/686 atomic regions from SNP 189140 to 189740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,993 DEBUG Processing 654/730 atomic regions from SNP 196178 to 196778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,045 DEBUG Processing 339/569 atomic regions from SNP 101668 to 102268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,153 DEBUG Processing 402/673 atomic regions from SNP 120410 to 121010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,178 DEBUG Processing 415/606 atomic regions from SNP 124495 to 125095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,206 DEBUG Processing 632/686 atomic regions from SNP 189440 to 190040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,213 DEBUG Processing 655/730 atomic regions from SNP 196478 to 197078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,247 DEBUG Processing 340/569 atomic regions from SNP 101968 to 102568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,348 DEBUG Processing 403/673 atomic regions from SNP 120710 to 121310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,409 DEBUG Processing 416/606 atomic regions from SNP 124795 to 125395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,415 DEBUG Processing 633/686 atomic regions from SNP 189740 to 190340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,422 DEBUG Processing 656/730 atomic regions from SNP 196778 to 197378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,442 DEBUG Processing 341/569 atomic regions from SNP 102268 to 102868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,539 DEBUG Processing 404/673 atomic regions from SNP 121010 to 121610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,616 DEBUG Processing 417/606 atomic regions from SNP 125095 to 125695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,623 DEBUG Processing 634/686 atomic regions from SNP 190040 to 190640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,631 DEBUG Processing 657/730 atomic regions from SNP 197078 to 197678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,635 DEBUG Processing 342/569 atomic regions from SNP 102568 to 103168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,726 DEBUG Processing 405/673 atomic regions from SNP 121310 to 121910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,831 DEBUG Processing 418/606 atomic regions from SNP 125395 to 125995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,840 DEBUG Processing 343/569 atomic regions from SNP 102868 to 103468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,841 DEBUG Processing 658/730 atomic regions from SNP 197378 to 197978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,843 DEBUG Processing 635/686 atomic regions from SNP 190340 to 190940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,916 DEBUG Processing 406/673 atomic regions from SNP 121610 to 122210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,046 DEBUG Processing 344/569 atomic regions from SNP 103168 to 103768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,057 DEBUG Processing 419/606 atomic regions from SNP 125695 to 126295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,059 DEBUG Processing 659/730 atomic regions from SNP 197678 to 198278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,062 DEBUG Processing 636/686 atomic regions from SNP 190640 to 191240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,123 DEBUG Processing 407/673 atomic regions from SNP 121910 to 122510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,247 DEBUG Processing 345/569 atomic regions from SNP 103468 to 104068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,267 DEBUG Processing 660/730 atomic regions from SNP 197978 to 198578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,284 DEBUG Processing 420/606 atomic regions from SNP 125995 to 126595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,291 DEBUG Processing 637/686 atomic regions from SNP 190940 to 191540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,364 DEBUG Processing 408/673 atomic regions from SNP 122210 to 122810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,537 DEBUG Processing 346/569 atomic regions from SNP 103768 to 104368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,545 DEBUG Processing 661/730 atomic regions from SNP 198278 to 198878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,577 DEBUG Processing 409/673 atomic regions from SNP 122510 to 123110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,591 DEBUG Processing 421/606 atomic regions from SNP 126295 to 126895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,612 DEBUG Processing 638/686 atomic regions from SNP 191240 to 191840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,731 DEBUG Processing 347/569 atomic regions from SNP 104068 to 104668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,757 DEBUG Processing 662/730 atomic regions from SNP 198578 to 199178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,791 DEBUG Processing 410/673 atomic regions from SNP 122810 to 123410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,799 DEBUG Processing 422/606 atomic regions from SNP 126595 to 127195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,858 DEBUG Processing 639/686 atomic regions from SNP 191540 to 192140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,930 DEBUG Processing 348/569 atomic regions from SNP 104368 to 104968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,966 DEBUG Processing 663/730 atomic regions from SNP 198878 to 199478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,006 DEBUG Processing 423/606 atomic regions from SNP 126895 to 127495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,012 DEBUG Processing 411/673 atomic regions from SNP 123110 to 123710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,096 DEBUG Processing 640/686 atomic regions from SNP 191840 to 192440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,127 DEBUG Processing 349/569 atomic regions from SNP 104668 to 105268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,178 DEBUG Processing 664/730 atomic regions from SNP 199178 to 199778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,222 DEBUG Processing 424/606 atomic regions from SNP 127195 to 127795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,242 DEBUG Processing 412/673 atomic regions from SNP 123410 to 124010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,324 DEBUG Processing 350/569 atomic regions from SNP 104968 to 105568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,336 DEBUG Processing 641/686 atomic regions from SNP 192140 to 192740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,384 DEBUG Processing 665/730 atomic regions from SNP 199478 to 200078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,438 DEBUG Processing 425/606 atomic regions from SNP 127495 to 128095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,479 DEBUG Processing 413/673 atomic regions from SNP 123710 to 124310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,531 DEBUG Processing 351/569 atomic regions from SNP 105268 to 105868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,565 DEBUG Processing 642/686 atomic regions from SNP 192440 to 193040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,609 DEBUG Processing 666/730 atomic regions from SNP 199778 to 200378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,664 DEBUG Processing 426/606 atomic regions from SNP 127795 to 128395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,715 DEBUG Processing 414/673 atomic regions from SNP 124010 to 124610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,727 DEBUG Processing 352/569 atomic regions from SNP 105568 to 106168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,794 DEBUG Processing 643/686 atomic regions from SNP 192740 to 193340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,821 DEBUG Processing 667/730 atomic regions from SNP 200078 to 200678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,873 DEBUG Processing 427/606 atomic regions from SNP 128095 to 128695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,927 DEBUG Processing 353/569 atomic regions from SNP 105868 to 106468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,946 DEBUG Processing 415/673 atomic regions from SNP 124310 to 124910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,028 DEBUG Processing 644/686 atomic regions from SNP 193040 to 193640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,036 DEBUG Processing 668/730 atomic regions from SNP 200378 to 200978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,075 DEBUG Processing 428/606 atomic regions from SNP 128395 to 128995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,125 DEBUG Processing 354/569 atomic regions from SNP 106168 to 106768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,193 DEBUG Processing 416/673 atomic regions from SNP 124610 to 125210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,403 DEBUG Processing 669/730 atomic regions from SNP 200678 to 201278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,403 DEBUG Processing 645/686 atomic regions from SNP 193340 to 193940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,415 DEBUG Processing 429/606 atomic regions from SNP 128695 to 129295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,460 DEBUG Processing 355/569 atomic regions from SNP 106468 to 107068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,492 DEBUG Processing 417/673 atomic regions from SNP 124910 to 125510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,614 DEBUG Processing 670/730 atomic regions from SNP 200978 to 201578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,637 DEBUG Processing 430/606 atomic regions from SNP 128995 to 129595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,660 DEBUG Processing 646/686 atomic regions from SNP 193640 to 194240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,682 DEBUG Processing 356/569 atomic regions from SNP 106768 to 107368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,715 DEBUG Processing 418/673 atomic regions from SNP 125210 to 125810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,824 DEBUG Processing 671/730 atomic regions from SNP 201278 to 201878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,857 DEBUG Processing 431/606 atomic regions from SNP 129295 to 129895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,878 DEBUG Processing 357/569 atomic regions from SNP 107068 to 107668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,884 DEBUG Processing 647/686 atomic regions from SNP 193940 to 194540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,920 DEBUG Processing 419/673 atomic regions from SNP 125510 to 126110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,025 DEBUG Processing 672/730 atomic regions from SNP 201578 to 202178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,074 DEBUG Processing 358/569 atomic regions from SNP 107368 to 107968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,077 DEBUG Processing 432/606 atomic regions from SNP 129595 to 130195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,096 DEBUG Processing 648/686 atomic regions from SNP 194240 to 194840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,124 DEBUG Processing 420/673 atomic regions from SNP 125810 to 126410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,225 DEBUG Processing 673/730 atomic regions from SNP 201878 to 202478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,272 DEBUG Processing 359/569 atomic regions from SNP 107668 to 108268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,303 DEBUG Processing 433/606 atomic regions from SNP 129895 to 130495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,311 DEBUG Processing 649/686 atomic regions from SNP 194540 to 195140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,336 DEBUG Processing 421/673 atomic regions from SNP 126110 to 126710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,430 DEBUG Processing 674/730 atomic regions from SNP 202178 to 202778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,471 DEBUG Processing 360/569 atomic regions from SNP 107968 to 108568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,530 DEBUG Processing 650/686 atomic regions from SNP 194840 to 195440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,531 DEBUG Processing 434/606 atomic regions from SNP 130195 to 130795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,550 DEBUG Processing 422/673 atomic regions from SNP 126410 to 127010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,632 DEBUG Processing 675/730 atomic regions from SNP 202478 to 203078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,662 DEBUG Processing 361/569 atomic regions from SNP 108268 to 108868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,751 DEBUG Processing 651/686 atomic regions from SNP 195140 to 195740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,757 DEBUG Processing 435/606 atomic regions from SNP 130495 to 131095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,760 DEBUG Processing 423/673 atomic regions from SNP 126710 to 127310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,835 DEBUG Processing 676/730 atomic regions from SNP 202778 to 203378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,858 DEBUG Processing 362/569 atomic regions from SNP 108568 to 109168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,033 DEBUG Processing 652/686 atomic regions from SNP 195440 to 196040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,035 DEBUG Processing 424/673 atomic regions from SNP 127010 to 127610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,045 DEBUG Processing 436/606 atomic regions from SNP 130795 to 131395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,171 DEBUG Processing 363/569 atomic regions from SNP 108868 to 109468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,181 DEBUG Processing 677/730 atomic regions from SNP 203078 to 203678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,298 DEBUG Processing 653/686 atomic regions from SNP 195740 to 196340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,307 DEBUG Processing 425/673 atomic regions from SNP 127310 to 127910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,323 DEBUG Processing 437/606 atomic regions from SNP 131095 to 131695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,397 DEBUG Processing 364/569 atomic regions from SNP 109168 to 109768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,418 DEBUG Processing 678/730 atomic regions from SNP 203378 to 203978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,511 DEBUG Processing 654/686 atomic regions from SNP 196040 to 196640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,512 DEBUG Processing 426/673 atomic regions from SNP 127610 to 128210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,543 DEBUG Processing 438/606 atomic regions from SNP 131395 to 131995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,590 DEBUG Processing 365/569 atomic regions from SNP 109468 to 110068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,627 DEBUG Processing 679/730 atomic regions from SNP 203678 to 204278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,728 DEBUG Processing 655/686 atomic regions from SNP 196340 to 196940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,740 DEBUG Processing 427/673 atomic regions from SNP 127910 to 128510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,775 DEBUG Processing 439/606 atomic regions from SNP 131695 to 132295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,790 DEBUG Processing 366/569 atomic regions from SNP 109768 to 110368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,844 DEBUG Processing 680/730 atomic regions from SNP 203978 to 204578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,939 DEBUG Processing 656/686 atomic regions from SNP 196640 to 197240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,967 DEBUG Processing 428/673 atomic regions from SNP 128210 to 128810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,988 DEBUG Processing 367/569 atomic regions from SNP 110068 to 110668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,002 DEBUG Processing 440/606 atomic regions from SNP 131995 to 132595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,055 DEBUG Processing 681/730 atomic regions from SNP 204278 to 204878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,153 DEBUG Processing 657/686 atomic regions from SNP 196940 to 197540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,190 DEBUG Processing 368/569 atomic regions from SNP 110368 to 110968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,198 DEBUG Processing 429/673 atomic regions from SNP 128510 to 129110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,220 DEBUG Processing 441/606 atomic regions from SNP 132295 to 132895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,262 DEBUG Processing 682/730 atomic regions from SNP 204578 to 205178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,364 DEBUG Processing 658/686 atomic regions from SNP 197240 to 197840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,389 DEBUG Processing 369/569 atomic regions from SNP 110668 to 111268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,430 DEBUG Processing 430/673 atomic regions from SNP 128810 to 129410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,443 DEBUG Processing 442/606 atomic regions from SNP 132595 to 133195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,467 DEBUG Processing 683/730 atomic regions from SNP 204878 to 205478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,572 DEBUG Processing 659/686 atomic regions from SNP 197540 to 198140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,591 DEBUG Processing 370/569 atomic regions from SNP 110968 to 111568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,641 DEBUG Processing 431/673 atomic regions from SNP 129110 to 129710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,660 DEBUG Processing 443/606 atomic regions from SNP 132895 to 133495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,675 DEBUG Processing 684/730 atomic regions from SNP 205178 to 205778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,778 DEBUG Processing 660/686 atomic regions from SNP 197840 to 198440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,787 DEBUG Processing 371/569 atomic regions from SNP 111268 to 111868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,849 DEBUG Processing 432/673 atomic regions from SNP 129410 to 130010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,878 DEBUG Processing 444/606 atomic regions from SNP 133195 to 133795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,884 DEBUG Processing 685/730 atomic regions from SNP 205478 to 206078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,980 DEBUG Processing 372/569 atomic regions from SNP 111568 to 112168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,981 DEBUG Processing 661/686 atomic regions from SNP 198140 to 198740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,067 DEBUG Processing 433/673 atomic regions from SNP 129710 to 130310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,091 DEBUG Processing 686/730 atomic regions from SNP 205778 to 206378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,103 DEBUG Processing 445/606 atomic regions from SNP 133495 to 134095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,172 DEBUG Processing 373/569 atomic regions from SNP 111868 to 112468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,187 DEBUG Processing 662/686 atomic regions from SNP 198440 to 199040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,296 DEBUG Processing 687/730 atomic regions from SNP 206078 to 206678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,300 DEBUG Processing 434/673 atomic regions from SNP 130010 to 130610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,325 DEBUG Processing 446/606 atomic regions from SNP 133795 to 134395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,366 DEBUG Processing 374/569 atomic regions from SNP 112168 to 112768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,398 DEBUG Processing 663/686 atomic regions from SNP 198740 to 199340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,517 DEBUG Processing 688/730 atomic regions from SNP 206378 to 206978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,562 DEBUG Processing 435/673 atomic regions from SNP 130310 to 130910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,572 DEBUG Processing 447/606 atomic regions from SNP 134095 to 134695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,584 DEBUG Processing 375/569 atomic regions from SNP 112468 to 113068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,615 DEBUG Processing 664/686 atomic regions from SNP 199040 to 199640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,753 DEBUG Processing 689/730 atomic regions from SNP 206678 to 207278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,783 DEBUG Processing 376/569 atomic regions from SNP 112768 to 113368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,801 DEBUG Processing 448/606 atomic regions from SNP 134395 to 134995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,807 DEBUG Processing 436/673 atomic regions from SNP 130610 to 131210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,833 DEBUG Processing 665/686 atomic regions from SNP 199340 to 199940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,979 DEBUG Processing 377/569 atomic regions from SNP 113068 to 113668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,993 DEBUG Processing 690/730 atomic regions from SNP 206978 to 207578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,028 DEBUG Processing 449/606 atomic regions from SNP 134695 to 135295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,043 DEBUG Processing 437/673 atomic regions from SNP 130910 to 131510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,048 DEBUG Processing 666/686 atomic regions from SNP 199640 to 200240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,177 DEBUG Processing 378/569 atomic regions from SNP 113368 to 113968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,232 DEBUG Processing 691/730 atomic regions from SNP 207278 to 207878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,254 DEBUG Processing 450/606 atomic regions from SNP 134995 to 135595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,262 DEBUG Processing 667/686 atomic regions from SNP 199940 to 200540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,284 DEBUG Processing 438/673 atomic regions from SNP 131210 to 131810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,378 DEBUG Processing 379/569 atomic regions from SNP 113668 to 114268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,470 DEBUG Processing 692/730 atomic regions from SNP 207578 to 208178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,478 DEBUG Processing 668/686 atomic regions from SNP 200240 to 200840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,484 DEBUG Processing 451/606 atomic regions from SNP 135295 to 135895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,533 DEBUG Processing 439/673 atomic regions from SNP 131510 to 132110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,573 DEBUG Processing 380/569 atomic regions from SNP 113968 to 114568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,685 DEBUG Processing 669/686 atomic regions from SNP 200540 to 201140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,706 DEBUG Processing 693/730 atomic regions from SNP 207878 to 208478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,708 DEBUG Processing 452/606 atomic regions from SNP 135595 to 136195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,763 DEBUG Processing 440/673 atomic regions from SNP 131810 to 132410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,768 DEBUG Processing 381/569 atomic regions from SNP 114268 to 114868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,888 DEBUG Processing 670/686 atomic regions from SNP 200840 to 201440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,934 DEBUG Processing 453/606 atomic regions from SNP 135895 to 136495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,944 DEBUG Processing 694/730 atomic regions from SNP 208178 to 208778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,965 DEBUG Processing 382/569 atomic regions from SNP 114568 to 115168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,996 DEBUG Processing 441/673 atomic regions from SNP 132110 to 132710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,093 DEBUG Processing 671/686 atomic regions from SNP 201140 to 201740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,155 DEBUG Processing 383/569 atomic regions from SNP 114868 to 115468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,160 DEBUG Processing 454/606 atomic regions from SNP 136195 to 136795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,178 DEBUG Processing 695/730 atomic regions from SNP 208478 to 209078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,220 DEBUG Processing 442/673 atomic regions from SNP 132410 to 133010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,295 DEBUG Processing 672/686 atomic regions from SNP 201440 to 202040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,348 DEBUG Processing 384/569 atomic regions from SNP 115168 to 115768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,390 DEBUG Processing 455/606 atomic regions from SNP 136495 to 137095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,415 DEBUG Processing 696/730 atomic regions from SNP 208778 to 209378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,433 DEBUG Processing 443/673 atomic regions from SNP 132710 to 133310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,498 DEBUG Processing 673/686 atomic regions from SNP 201740 to 202340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,538 DEBUG Processing 385/569 atomic regions from SNP 115468 to 116068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,616 DEBUG Processing 456/606 atomic regions from SNP 136795 to 137395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,643 DEBUG Processing 444/673 atomic regions from SNP 133010 to 133610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,650 DEBUG Processing 697/730 atomic regions from SNP 209078 to 209678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,701 DEBUG Processing 674/686 atomic regions from SNP 202040 to 202640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,726 DEBUG Processing 386/569 atomic regions from SNP 115768 to 116368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,843 DEBUG Processing 457/606 atomic regions from SNP 137095 to 137695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,864 DEBUG Processing 445/673 atomic regions from SNP 133310 to 133910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,890 DEBUG Processing 698/730 atomic regions from SNP 209378 to 209978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,908 DEBUG Processing 675/686 atomic regions from SNP 202340 to 202940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,913 DEBUG Processing 387/569 atomic regions from SNP 116068 to 116668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,067 DEBUG Processing 458/606 atomic regions from SNP 137395 to 137995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,082 DEBUG Processing 446/673 atomic regions from SNP 133610 to 134210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,107 DEBUG Processing 388/569 atomic regions from SNP 116368 to 116968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,122 DEBUG Processing 676/686 atomic regions from SNP 202640 to 203240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,124 DEBUG Processing 699/730 atomic regions from SNP 209678 to 210278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,292 DEBUG Processing 447/673 atomic regions from SNP 133910 to 134510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,292 DEBUG Processing 459/606 atomic regions from SNP 137695 to 138295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,302 DEBUG Processing 389/569 atomic regions from SNP 116668 to 117268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,335 DEBUG Processing 677/686 atomic regions from SNP 202940 to 203540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,354 DEBUG Processing 700/730 atomic regions from SNP 209978 to 210578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,498 DEBUG Processing 390/569 atomic regions from SNP 116968 to 117568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,507 DEBUG Processing 448/673 atomic regions from SNP 134210 to 134810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,515 DEBUG Processing 460/606 atomic regions from SNP 137995 to 138595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,552 DEBUG Processing 678/686 atomic regions from SNP 203240 to 203840 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,585 DEBUG Processing 701/730 atomic regions from SNP 210278 to 210878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,692 DEBUG Processing 391/569 atomic regions from SNP 117268 to 117868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,720 DEBUG Processing 449/673 atomic regions from SNP 134510 to 135110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,733 DEBUG Processing 461/606 atomic regions from SNP 138295 to 138895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,763 DEBUG Processing 679/686 atomic regions from SNP 203540 to 204140 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,813 DEBUG Processing 702/730 atomic regions from SNP 210578 to 211178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,880 DEBUG Processing 392/569 atomic regions from SNP 117568 to 118168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,929 DEBUG Processing 450/673 atomic regions from SNP 134810 to 135410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,949 DEBUG Processing 462/606 atomic regions from SNP 138595 to 139195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,970 DEBUG Processing 680/686 atomic regions from SNP 203840 to 204440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,042 DEBUG Processing 703/730 atomic regions from SNP 210878 to 211478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,069 DEBUG Processing 393/569 atomic regions from SNP 117868 to 118468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,142 DEBUG Processing 451/673 atomic regions from SNP 135110 to 135710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,173 DEBUG Processing 463/606 atomic regions from SNP 138895 to 139495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,179 DEBUG Processing 681/686 atomic regions from SNP 204140 to 204740 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,256 DEBUG Processing 394/569 atomic regions from SNP 118168 to 118768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,262 DEBUG Processing 704/730 atomic regions from SNP 211178 to 211778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,351 DEBUG Processing 452/673 atomic regions from SNP 135410 to 136010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,386 DEBUG Processing 682/686 atomic regions from SNP 204440 to 205040 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,391 DEBUG Processing 464/606 atomic regions from SNP 139195 to 139795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,443 DEBUG Processing 395/569 atomic regions from SNP 118468 to 119068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,494 DEBUG Processing 705/730 atomic regions from SNP 211478 to 212078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,573 DEBUG Processing 453/673 atomic regions from SNP 135710 to 136310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,589 DEBUG Processing 683/686 atomic regions from SNP 204740 to 205340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,607 DEBUG Processing 465/606 atomic regions from SNP 139495 to 140095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,632 DEBUG Processing 396/569 atomic regions from SNP 118768 to 119368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,724 DEBUG Processing 706/730 atomic regions from SNP 211778 to 212378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,792 DEBUG Processing 684/686 atomic regions from SNP 205040 to 205640 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,800 DEBUG Processing 454/673 atomic regions from SNP 136010 to 136610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,818 DEBUG Processing 466/606 atomic regions from SNP 139795 to 140395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,823 DEBUG Processing 397/569 atomic regions from SNP 119068 to 119668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,948 DEBUG Processing 707/730 atomic regions from SNP 212078 to 212678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,008 DEBUG Processing 685/686 atomic regions from SNP 205340 to 205940 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,020 DEBUG Processing 398/569 atomic regions from SNP 119368 to 119968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,032 DEBUG Processing 467/606 atomic regions from SNP 140095 to 140695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,034 DEBUG Processing 455/673 atomic regions from SNP 136310 to 136910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,170 DEBUG Processing 708/730 atomic regions from SNP 212378 to 212978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,208 DEBUG Processing 399/569 atomic regions from SNP 119668 to 120268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,235 DEBUG Processing 686/686 atomic regions from SNP 205640 to 206240 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,248 DEBUG Processing 468/606 atomic regions from SNP 140395 to 140995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,270 DEBUG Processing 456/673 atomic regions from SNP 136610 to 137210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,369 DEBUG Unique SNPs positions in subchromosome 1: 206241 2025-01-31 09:57:26,396 DEBUG Processing 400/569 atomic regions from SNP 119968 to 120568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,406 DEBUG Processing 709/730 atomic regions from SNP 212678 to 213278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,467 DEBUG Processing 469/606 atomic regions from SNP 140695 to 141295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,496 DEBUG Processing 457/673 atomic regions from SNP 136910 to 137510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,581 DEBUG Processing 401/569 atomic regions from SNP 120268 to 120868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,635 DEBUG Processing 710/730 atomic regions from SNP 212978 to 213578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,685 DEBUG Processing 470/606 atomic regions from SNP 140995 to 141595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,715 DEBUG Processing 458/673 atomic regions from SNP 137210 to 137810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,771 DEBUG Processing 402/569 atomic regions from SNP 120568 to 121168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,853 DEBUG Processing 711/730 atomic regions from SNP 213278 to 213878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,909 DEBUG Processing 471/606 atomic regions from SNP 141295 to 141895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,942 DEBUG Processing 459/673 atomic regions from SNP 137510 to 138110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,967 DEBUG Processing 403/569 atomic regions from SNP 120868 to 121468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,057 DEBUG Processing 712/730 atomic regions from SNP 213578 to 214178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,130 DEBUG Processing 472/606 atomic regions from SNP 141595 to 142195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,153 DEBUG Processing 404/569 atomic regions from SNP 121168 to 121768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,167 DEBUG Processing 460/673 atomic regions from SNP 137810 to 138410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,262 DEBUG Processing 713/730 atomic regions from SNP 213878 to 214478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,337 DEBUG Processing 405/569 atomic regions from SNP 121468 to 122068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,352 DEBUG Processing 473/606 atomic regions from SNP 141895 to 142495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,399 DEBUG Processing 461/673 atomic regions from SNP 138110 to 138710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,473 DEBUG Processing 714/730 atomic regions from SNP 214178 to 214778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,521 DEBUG Processing 406/569 atomic regions from SNP 121768 to 122368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,564 DEBUG Processing 474/606 atomic regions from SNP 142195 to 142795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,625 DEBUG Processing 462/673 atomic regions from SNP 138410 to 139010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,689 DEBUG Processing 715/730 atomic regions from SNP 214478 to 215078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,703 DEBUG Processing 407/569 atomic regions from SNP 122068 to 122668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,754 DEBUG Processing 475/606 atomic regions from SNP 142495 to 143095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,852 DEBUG Processing 463/673 atomic regions from SNP 138710 to 139310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,887 DEBUG Processing 408/569 atomic regions from SNP 122368 to 122968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,925 DEBUG Processing 716/730 atomic regions from SNP 214778 to 215378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,959 DEBUG Processing 476/606 atomic regions from SNP 142795 to 143395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,070 DEBUG Processing 409/569 atomic regions from SNP 122668 to 123268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,080 DEBUG Processing 464/673 atomic regions from SNP 139010 to 139610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,143 DEBUG Processing 717/730 atomic regions from SNP 215078 to 215678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,178 DEBUG Processing 477/606 atomic regions from SNP 143095 to 143695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,255 DEBUG Processing 410/569 atomic regions from SNP 122968 to 123568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,306 DEBUG Processing 465/673 atomic regions from SNP 139310 to 139910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,361 DEBUG Processing 718/730 atomic regions from SNP 215378 to 215978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,406 DEBUG Processing 478/606 atomic regions from SNP 143395 to 143995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,441 DEBUG Processing 411/569 atomic regions from SNP 123268 to 123868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,531 DEBUG Processing 466/673 atomic regions from SNP 139610 to 140210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,586 DEBUG Processing 719/730 atomic regions from SNP 215678 to 216278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,624 DEBUG Processing 479/606 atomic regions from SNP 143695 to 144295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,628 DEBUG Processing 412/569 atomic regions from SNP 123568 to 124168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,709 DEBUG Subchromosome time: 195.74526005994994, subchromosome SNPs: 206241 2025-01-31 09:57:28,709 DEBUG Estimated BADs: [3.42, 1.71, 3.42, 10.27, 3.42, 20.54, 3.42, 1.14, 3.42, 6.85, 0.86, 3.42, 6.85, 3.42, 1.71, 1.14, 3.42, 1.71] SNP counts: [2809, 6661, 21733, 1567, 1940, 745, 4076, 3007, 48923, 12261, 1162, 16945, 1471, 4737, 15908, 5693, 48589, 8014] SNP IDs counts: [2809, 6661, 21733, 1567, 1940, 745, 4076, 3007, 48923, 12261, 1162, 16945, 1471, 4737, 15908, 5693, 48589, 8014] Critical gap: 593337bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.68Mbp, 8.53Mbp, 21.16Mbp, 22.06Mbp, 23.37Mbp, 23.77Mbp, 25.97Mbp, 27.71Mbp, 54.55Mbp, 61.03Mbp, 62.01Mbp, 73.18Mbp, 73.94Mbp, 76.62Mbp, 85.62Mbp, 88.98Mbp, 115.38Mbp, 120.42Mbp] 2025-01-31 09:57:28,709 DEBUG chr13 time: 195.74568163300864 s 2025-01-31 09:57:28,760 DEBUG Processing 467/673 atomic regions from SNP 139910 to 140510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,816 DEBUG Processing 413/569 atomic regions from SNP 123868 to 124468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,818 DEBUG chr13: Fitting background model for 18 segments 2025-01-31 09:57:28,819 DEBUG Processing 720/730 atomic regions from SNP 215978 to 216578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,847 DEBUG Processing 480/606 atomic regions from SNP 143995 to 144595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,983 DEBUG Processing 468/673 atomic regions from SNP 140210 to 140810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,008 DEBUG Processing 414/569 atomic regions from SNP 124168 to 124768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,048 DEBUG Processing 721/730 atomic regions from SNP 216278 to 216878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,071 DEBUG Processing 481/606 atomic regions from SNP 144295 to 144895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,199 DEBUG Processing 415/569 atomic regions from SNP 124468 to 125068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,208 DEBUG Processing 469/673 atomic regions from SNP 140510 to 141110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,284 DEBUG Processing 722/730 atomic regions from SNP 216578 to 217178 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,288 DEBUG Processing 482/606 atomic regions from SNP 144595 to 145195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,388 DEBUG Processing 416/569 atomic regions from SNP 124768 to 125368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,426 DEBUG Processing 470/673 atomic regions from SNP 140810 to 141410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,500 DEBUG Processing 483/606 atomic regions from SNP 144895 to 145495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,524 DEBUG Processing 723/730 atomic regions from SNP 216878 to 217478 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,581 DEBUG Processing 417/569 atomic regions from SNP 125068 to 125668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,646 DEBUG Processing 471/673 atomic regions from SNP 141110 to 141710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,698 DEBUG Segmenting atomic regions: 2025-01-31 09:57:29,709 DEBUG Processing 484/606 atomic regions from SNP 145195 to 145795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,761 DEBUG Processing 724/730 atomic regions from SNP 217178 to 217778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,768 DEBUG Processing 1/542 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,770 DEBUG Processing 418/569 atomic regions from SNP 125368 to 125968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,872 DEBUG Processing 472/673 atomic regions from SNP 141410 to 142010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,928 DEBUG Processing 485/606 atomic regions from SNP 145495 to 146095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,970 DEBUG Processing 419/569 atomic regions from SNP 125668 to 126268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,983 DEBUG Processing 2/542 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,003 DEBUG Processing 725/730 atomic regions from SNP 217478 to 218078 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,102 DEBUG Processing 473/673 atomic regions from SNP 141710 to 142310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,155 DEBUG Processing 486/606 atomic regions from SNP 145795 to 146395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,169 DEBUG Processing 420/569 atomic regions from SNP 125968 to 126568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,184 DEBUG Processing 3/542 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,240 DEBUG Processing 726/730 atomic regions from SNP 217778 to 218378 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,329 DEBUG Processing 474/673 atomic regions from SNP 142010 to 142610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,372 DEBUG Processing 421/569 atomic regions from SNP 126268 to 126868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,388 DEBUG Processing 487/606 atomic regions from SNP 146095 to 146695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,397 DEBUG Processing 4/542 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,476 DEBUG Processing 727/730 atomic regions from SNP 218078 to 218678 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,559 DEBUG Processing 475/673 atomic regions from SNP 142310 to 142910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,572 DEBUG Processing 422/569 atomic regions from SNP 126568 to 127168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,593 DEBUG Processing 5/542 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,609 DEBUG Processing 488/606 atomic regions from SNP 146395 to 146995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,695 DEBUG Processing 728/730 atomic regions from SNP 218378 to 218978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,770 DEBUG Processing 423/569 atomic regions from SNP 126868 to 127468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,791 DEBUG Processing 476/673 atomic regions from SNP 142610 to 143210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,791 DEBUG Processing 6/542 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,828 DEBUG Processing 489/606 atomic regions from SNP 146695 to 147295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,910 DEBUG Processing 729/730 atomic regions from SNP 218678 to 219278 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,966 DEBUG Processing 424/569 atomic regions from SNP 127168 to 127768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,988 DEBUG Processing 7/542 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,037 DEBUG Processing 477/673 atomic regions from SNP 142910 to 143510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,044 DEBUG Processing 490/606 atomic regions from SNP 146995 to 147595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,123 DEBUG Processing 730/730 atomic regions from SNP 218978 to 219578 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,162 DEBUG Processing 425/569 atomic regions from SNP 127468 to 128068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,184 DEBUG Processing 8/542 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,240 DEBUG Unique SNPs positions in subchromosome 1: 219579 2025-01-31 09:57:31,256 DEBUG Processing 491/606 atomic regions from SNP 147295 to 147895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,293 DEBUG Processing 478/673 atomic regions from SNP 143210 to 143810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,373 DEBUG Processing 426/569 atomic regions from SNP 127768 to 128368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,391 DEBUG Processing 9/542 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,470 DEBUG Processing 492/606 atomic regions from SNP 147595 to 148195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,534 DEBUG Processing 479/673 atomic regions from SNP 143510 to 144110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,572 DEBUG Processing 427/569 atomic regions from SNP 128068 to 128668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,586 DEBUG Processing 10/542 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,679 DEBUG Processing 493/606 atomic regions from SNP 147895 to 148495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,770 DEBUG Processing 428/569 atomic regions from SNP 128368 to 128968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,774 DEBUG Processing 480/673 atomic regions from SNP 143810 to 144410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,781 DEBUG Processing 11/542 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,898 DEBUG Processing 494/606 atomic regions from SNP 148195 to 148795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,969 DEBUG Processing 429/569 atomic regions from SNP 128668 to 129268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,980 DEBUG Processing 12/542 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,007 DEBUG Processing 481/673 atomic regions from SNP 144110 to 144710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,119 DEBUG Processing 495/606 atomic regions from SNP 148495 to 149095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,167 DEBUG Processing 430/569 atomic regions from SNP 128968 to 129568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,197 DEBUG Processing 13/542 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,219 DEBUG Processing 482/673 atomic regions from SNP 144410 to 145010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,339 DEBUG Processing 496/606 atomic regions from SNP 148795 to 149395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,366 DEBUG Processing 431/569 atomic regions from SNP 129268 to 129868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,412 DEBUG Processing 14/542 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,431 DEBUG Processing 483/673 atomic regions from SNP 144710 to 145310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,556 DEBUG Processing 497/606 atomic regions from SNP 149095 to 149695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,557 DEBUG Processing 432/569 atomic regions from SNP 129568 to 130168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,624 DEBUG Processing 15/542 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,641 DEBUG Processing 484/673 atomic regions from SNP 145010 to 145610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,748 DEBUG Processing 433/569 atomic regions from SNP 129868 to 130468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,764 DEBUG Processing 498/606 atomic regions from SNP 149395 to 149995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,833 DEBUG Processing 16/542 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,849 DEBUG Processing 485/673 atomic regions from SNP 145310 to 145910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,939 DEBUG Processing 434/569 atomic regions from SNP 130168 to 130768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,977 DEBUG Processing 499/606 atomic regions from SNP 149695 to 150295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,036 DEBUG Processing 17/542 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,056 DEBUG Processing 486/673 atomic regions from SNP 145610 to 146210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,132 DEBUG Processing 435/569 atomic regions from SNP 130468 to 131068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,180 DEBUG Processing 500/606 atomic regions from SNP 149995 to 150595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,242 DEBUG Processing 18/542 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,261 DEBUG Processing 487/673 atomic regions from SNP 145910 to 146510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,321 DEBUG Processing 436/569 atomic regions from SNP 130768 to 131368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,371 DEBUG Processing 501/606 atomic regions from SNP 150295 to 150895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,447 DEBUG Processing 19/542 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,465 DEBUG Processing 488/673 atomic regions from SNP 146210 to 146810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,509 DEBUG Processing 437/569 atomic regions from SNP 131068 to 131668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,558 DEBUG Processing 502/606 atomic regions from SNP 150595 to 151195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,647 DEBUG Processing 20/542 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,668 DEBUG Processing 489/673 atomic regions from SNP 146510 to 147110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,707 DEBUG Processing 438/569 atomic regions from SNP 131368 to 131968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,744 DEBUG Processing 503/606 atomic regions from SNP 150895 to 151495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,855 DEBUG Processing 21/542 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,875 DEBUG Processing 490/673 atomic regions from SNP 146810 to 147410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,915 DEBUG Processing 439/569 atomic regions from SNP 131668 to 132268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,935 DEBUG Processing 504/606 atomic regions from SNP 151195 to 151795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,070 DEBUG Processing 22/542 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,084 DEBUG Processing 491/673 atomic regions from SNP 147110 to 147710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,107 DEBUG Processing 440/569 atomic regions from SNP 131968 to 132568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,124 DEBUG Processing 505/606 atomic regions from SNP 151495 to 152095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,272 DEBUG Processing 23/542 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,292 DEBUG Processing 492/673 atomic regions from SNP 147410 to 148010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,301 DEBUG Processing 441/569 atomic regions from SNP 132268 to 132868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,312 DEBUG Processing 506/606 atomic regions from SNP 151795 to 152395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,465 DEBUG Processing 24/542 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,498 DEBUG Processing 493/673 atomic regions from SNP 147710 to 148310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,503 DEBUG Processing 442/569 atomic regions from SNP 132568 to 133168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,505 DEBUG Processing 507/606 atomic regions from SNP 152095 to 152695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,653 DEBUG Processing 25/542 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,692 DEBUG Processing 508/606 atomic regions from SNP 152395 to 152995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,706 DEBUG Processing 494/673 atomic regions from SNP 148010 to 148610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,719 DEBUG Processing 443/569 atomic regions from SNP 132868 to 133468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,838 DEBUG Processing 26/542 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,876 DEBUG Processing 509/606 atomic regions from SNP 152695 to 153295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,908 DEBUG Processing 444/569 atomic regions from SNP 133168 to 133768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,910 DEBUG Processing 495/673 atomic regions from SNP 148310 to 148910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,019 DEBUG Processing 27/542 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,059 DEBUG Processing 510/606 atomic regions from SNP 152995 to 153595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,102 DEBUG Processing 445/569 atomic regions from SNP 133468 to 134068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,117 DEBUG Processing 496/673 atomic regions from SNP 148610 to 149210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,209 DEBUG Processing 28/542 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,242 DEBUG Processing 511/606 atomic regions from SNP 153295 to 153895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,294 DEBUG Processing 446/569 atomic regions from SNP 133768 to 134368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,321 DEBUG Processing 497/673 atomic regions from SNP 148910 to 149510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,407 DEBUG Processing 29/542 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,435 DEBUG Processing 512/606 atomic regions from SNP 153595 to 154195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,483 DEBUG Processing 447/569 atomic regions from SNP 134068 to 134668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,526 DEBUG Processing 498/673 atomic regions from SNP 149210 to 149810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,590 DEBUG Processing 30/542 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,639 DEBUG Processing 513/606 atomic regions from SNP 153895 to 154495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,675 DEBUG Processing 448/569 atomic regions from SNP 134368 to 134968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,729 DEBUG Processing 499/673 atomic regions from SNP 149510 to 150110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,777 DEBUG Processing 31/542 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,853 DEBUG Processing 514/606 atomic regions from SNP 154195 to 154795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,864 DEBUG Processing 449/569 atomic regions from SNP 134668 to 135268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,934 DEBUG Processing 500/673 atomic regions from SNP 149810 to 150410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,966 DEBUG Processing 32/542 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,051 DEBUG Processing 450/569 atomic regions from SNP 134968 to 135568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,066 DEBUG Processing 515/606 atomic regions from SNP 154495 to 155095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,138 DEBUG Processing 501/673 atomic regions from SNP 150110 to 150710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,154 DEBUG Processing 33/542 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,238 DEBUG Processing 451/569 atomic regions from SNP 135268 to 135868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,279 DEBUG Processing 516/606 atomic regions from SNP 154795 to 155395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,344 DEBUG Processing 34/542 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,347 DEBUG Processing 502/673 atomic regions from SNP 150410 to 151010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,423 DEBUG Processing 452/569 atomic regions from SNP 135568 to 136168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,494 DEBUG Processing 517/606 atomic regions from SNP 155095 to 155695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,530 DEBUG Processing 35/542 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,554 DEBUG Processing 503/673 atomic regions from SNP 150710 to 151310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,611 DEBUG Processing 453/569 atomic regions from SNP 135868 to 136468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,708 DEBUG Processing 518/606 atomic regions from SNP 155395 to 155995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,710 DEBUG Processing 36/542 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,768 DEBUG Processing 504/673 atomic regions from SNP 151010 to 151610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,797 DEBUG Processing 454/569 atomic regions from SNP 136168 to 136768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,897 DEBUG Processing 37/542 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,908 DEBUG Processing 519/606 atomic regions from SNP 155695 to 156295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,985 DEBUG Processing 505/673 atomic regions from SNP 151310 to 151910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,994 DEBUG Processing 455/569 atomic regions from SNP 136468 to 137068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,082 DEBUG Processing 38/542 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,090 DEBUG Processing 520/606 atomic regions from SNP 155995 to 156595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,191 DEBUG Processing 456/569 atomic regions from SNP 136768 to 137368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,198 DEBUG Processing 506/673 atomic regions from SNP 151610 to 152210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,269 DEBUG Processing 39/542 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,274 DEBUG Processing 521/606 atomic regions from SNP 156295 to 156895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,384 DEBUG Processing 457/569 atomic regions from SNP 137068 to 137668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,404 DEBUG Processing 507/673 atomic regions from SNP 151910 to 152510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,460 DEBUG Processing 522/606 atomic regions from SNP 156595 to 157195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,460 DEBUG Processing 40/542 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,581 DEBUG Processing 458/569 atomic regions from SNP 137368 to 137968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,616 DEBUG Processing 508/673 atomic regions from SNP 152210 to 152810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,645 DEBUG Processing 523/606 atomic regions from SNP 156895 to 157495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,651 DEBUG Processing 41/542 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,774 DEBUG Processing 459/569 atomic regions from SNP 137668 to 138268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,833 DEBUG Processing 509/673 atomic regions from SNP 152510 to 153110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,833 DEBUG Processing 524/606 atomic regions from SNP 157195 to 157795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,851 DEBUG Processing 42/542 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,969 DEBUG Processing 460/569 atomic regions from SNP 137968 to 138568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,024 DEBUG Processing 525/606 atomic regions from SNP 157495 to 158095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,043 DEBUG Processing 510/673 atomic regions from SNP 152810 to 153410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,047 DEBUG Processing 43/542 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,162 DEBUG Processing 461/569 atomic regions from SNP 138268 to 138868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,208 DEBUG Processing 526/606 atomic regions from SNP 157795 to 158395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,241 DEBUG Processing 44/542 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,257 DEBUG Processing 511/673 atomic regions from SNP 153110 to 153710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,358 DEBUG Processing 462/569 atomic regions from SNP 138568 to 139168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,391 DEBUG Processing 527/606 atomic regions from SNP 158095 to 158695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,436 DEBUG Processing 45/542 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,470 DEBUG Processing 512/673 atomic regions from SNP 153410 to 154010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,552 DEBUG Processing 463/569 atomic regions from SNP 138868 to 139468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,573 DEBUG Processing 528/606 atomic regions from SNP 158395 to 158995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,627 DEBUG Processing 46/542 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,681 DEBUG Processing 513/673 atomic regions from SNP 153710 to 154310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,742 DEBUG Processing 464/569 atomic regions from SNP 139168 to 139768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,754 DEBUG Processing 529/606 atomic regions from SNP 158695 to 159295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,820 DEBUG Processing 47/542 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,893 DEBUG Processing 514/673 atomic regions from SNP 154010 to 154610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,935 DEBUG Processing 465/569 atomic regions from SNP 139468 to 140068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,935 DEBUG Processing 530/606 atomic regions from SNP 158995 to 159595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,008 DEBUG Processing 48/542 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,102 DEBUG Processing 515/673 atomic regions from SNP 154310 to 154910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,116 DEBUG Processing 531/606 atomic regions from SNP 159295 to 159895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,128 DEBUG Processing 466/569 atomic regions from SNP 139768 to 140368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,198 DEBUG Processing 49/542 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,298 DEBUG Processing 532/606 atomic regions from SNP 159595 to 160195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,312 DEBUG Processing 516/673 atomic regions from SNP 154610 to 155210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,322 DEBUG Processing 467/569 atomic regions from SNP 140068 to 140668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,387 DEBUG Processing 50/542 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,482 DEBUG Processing 533/606 atomic regions from SNP 159895 to 160495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,517 DEBUG Processing 468/569 atomic regions from SNP 140368 to 140968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,520 DEBUG Processing 517/673 atomic regions from SNP 154910 to 155510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,576 DEBUG Processing 51/542 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,663 DEBUG Processing 534/606 atomic regions from SNP 160195 to 160795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,713 DEBUG Processing 469/569 atomic regions from SNP 140668 to 141268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,734 DEBUG Processing 518/673 atomic regions from SNP 155210 to 155810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,779 DEBUG Processing 52/542 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,844 DEBUG Processing 535/606 atomic regions from SNP 160495 to 161095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,914 DEBUG Processing 470/569 atomic regions from SNP 140968 to 141568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,949 DEBUG Processing 519/673 atomic regions from SNP 155510 to 156110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,992 DEBUG Processing 53/542 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,023 DEBUG Processing 536/606 atomic regions from SNP 160795 to 161395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,105 DEBUG Processing 471/569 atomic regions from SNP 141268 to 141868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,156 DEBUG Processing 520/673 atomic regions from SNP 155810 to 156410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,187 DEBUG Processing 54/542 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,203 DEBUG Processing 537/606 atomic regions from SNP 161095 to 161695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,226 DEBUG Subchromosome time: 208.93500046094414, subchromosome SNPs: 219579 2025-01-31 09:57:40,226 DEBUG Estimated BADs: [39.23, 7.85, 1.96, 0.98, 1.96, 3.92, 1.31, 3.92, 1.31, 1.96, 3.92, 11.77, 3.92, 7.85, 3.92, 1.31, 3.92, 7.85, 3.92, 1.31, 3.92, 7.85] SNP counts: [148, 6866, 10223, 5718, 4535, 11433, 6629, 14444, 10834, 11245, 37600, 3139, 7609, 6160, 24289, 3904, 7010, 11916, 14654, 2421, 5794, 13008] SNP IDs counts: [148, 6866, 10223, 5718, 4535, 11433, 6629, 14444, 10834, 11245, 37600, 3139, 7609, 6160, 24289, 3904, 7010, 11916, 14654, 2421, 5794, 13008] Critical gap: 582728bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.87Mbp, 12.68Mbp, 16.03Mbp, 18.60Mbp, 24.81Mbp, 28.63Mbp, 36.54Mbp, 42.57Mbp, 48.76Mbp, 68.96Mbp, 70.60Mbp, 74.83Mbp, 78.07Mbp, 90.91Mbp, 93.08Mbp, 96.77Mbp, 103.02Mbp, 110.78Mbp, 112.08Mbp, 115.15Mbp, 122.08Mbp] 2025-01-31 09:57:40,226 DEBUG chr11 time: 208.935509428964 s 2025-01-31 09:57:40,298 DEBUG Processing 472/569 atomic regions from SNP 141568 to 142168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,332 DEBUG chr11: Fitting background model for 22 segments 2025-01-31 09:57:40,369 DEBUG Processing 521/673 atomic regions from SNP 156110 to 156710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,384 DEBUG Processing 55/542 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,387 DEBUG Processing 538/606 atomic regions from SNP 161395 to 161995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,490 DEBUG Processing 473/569 atomic regions from SNP 141868 to 142468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,571 DEBUG Processing 539/606 atomic regions from SNP 161695 to 162295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,582 DEBUG Processing 522/673 atomic regions from SNP 156410 to 157010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,595 DEBUG Processing 56/542 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,683 DEBUG Processing 474/569 atomic regions from SNP 142168 to 142768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,752 DEBUG Processing 540/606 atomic regions from SNP 161995 to 162595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,790 DEBUG Processing 523/673 atomic regions from SNP 156710 to 157310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,809 DEBUG Processing 57/542 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,879 DEBUG Processing 475/569 atomic regions from SNP 142468 to 143068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,950 DEBUG Processing 541/606 atomic regions from SNP 162295 to 162895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,004 DEBUG Processing 524/673 atomic regions from SNP 157010 to 157610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,028 DEBUG Processing 58/542 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,080 DEBUG Processing 476/569 atomic regions from SNP 142768 to 143368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,161 DEBUG Processing 542/606 atomic regions from SNP 162595 to 163195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,221 DEBUG Processing 525/673 atomic regions from SNP 157310 to 157910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,241 DEBUG Processing 59/542 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,285 DEBUG Processing 477/569 atomic regions from SNP 143068 to 143668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,363 DEBUG Processing 543/606 atomic regions from SNP 162895 to 163495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,441 DEBUG Processing 526/673 atomic regions from SNP 157610 to 158210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,447 DEBUG Processing 60/542 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,492 DEBUG Processing 478/569 atomic regions from SNP 143368 to 143968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,559 DEBUG Processing 544/606 atomic regions from SNP 163195 to 163795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,653 DEBUG Processing 61/542 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,665 DEBUG Processing 527/673 atomic regions from SNP 157910 to 158510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,696 DEBUG Processing 479/569 atomic regions from SNP 143668 to 144268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,746 DEBUG Processing 545/606 atomic regions from SNP 163495 to 164095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,864 DEBUG Processing 62/542 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,888 DEBUG Processing 528/673 atomic regions from SNP 158210 to 158810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,905 DEBUG Processing 480/569 atomic regions from SNP 143968 to 144568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,940 DEBUG Processing 546/606 atomic regions from SNP 163795 to 164395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,077 DEBUG Processing 63/542 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,118 DEBUG Processing 481/569 atomic regions from SNP 144268 to 144868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,119 DEBUG Processing 529/673 atomic regions from SNP 158510 to 159110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,135 DEBUG Processing 547/606 atomic regions from SNP 164095 to 164695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,286 DEBUG Processing 64/542 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,324 DEBUG Processing 548/606 atomic regions from SNP 164395 to 164995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,328 DEBUG Processing 482/569 atomic regions from SNP 144568 to 145168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,348 DEBUG Processing 530/673 atomic regions from SNP 158810 to 159410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,495 DEBUG Processing 65/542 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,516 DEBUG Processing 549/606 atomic regions from SNP 164695 to 165295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,541 DEBUG Processing 483/569 atomic regions from SNP 144868 to 145468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,583 DEBUG Processing 531/673 atomic regions from SNP 159110 to 159710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,706 DEBUG Processing 66/542 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,714 DEBUG Processing 550/606 atomic regions from SNP 164995 to 165595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,746 DEBUG Processing 484/569 atomic regions from SNP 145168 to 145768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,805 DEBUG Processing 532/673 atomic regions from SNP 159410 to 160010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,903 DEBUG Processing 551/606 atomic regions from SNP 165295 to 165895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,930 DEBUG Processing 67/542 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,955 DEBUG Processing 485/569 atomic regions from SNP 145468 to 146068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,028 DEBUG Processing 533/673 atomic regions from SNP 159710 to 160310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,088 DEBUG Processing 552/606 atomic regions from SNP 165595 to 166195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,142 DEBUG Processing 68/542 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,150 DEBUG Processing 486/569 atomic regions from SNP 145768 to 146368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,241 DEBUG Processing 534/673 atomic regions from SNP 160010 to 160610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,271 DEBUG Processing 553/606 atomic regions from SNP 165895 to 166495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,348 DEBUG Processing 487/569 atomic regions from SNP 146068 to 146668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,351 DEBUG Processing 69/542 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,457 DEBUG Processing 554/606 atomic regions from SNP 166195 to 166795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,458 DEBUG Processing 535/673 atomic regions from SNP 160310 to 160910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,555 DEBUG Processing 70/542 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,561 DEBUG Processing 488/569 atomic regions from SNP 146368 to 146968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,642 DEBUG Processing 555/606 atomic regions from SNP 166495 to 167095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,672 DEBUG Processing 536/673 atomic regions from SNP 160610 to 161210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,757 DEBUG Processing 71/542 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,776 DEBUG Processing 489/569 atomic regions from SNP 146668 to 147268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,830 DEBUG Processing 556/606 atomic regions from SNP 166795 to 167395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,891 DEBUG Processing 537/673 atomic regions from SNP 160910 to 161510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,959 DEBUG Processing 72/542 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,982 DEBUG Processing 490/569 atomic regions from SNP 146968 to 147568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,028 DEBUG Processing 557/606 atomic regions from SNP 167095 to 167695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,103 DEBUG Processing 538/673 atomic regions from SNP 161210 to 161810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,161 DEBUG Processing 73/542 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,185 DEBUG Processing 491/569 atomic regions from SNP 147268 to 147868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,221 DEBUG Processing 558/606 atomic regions from SNP 167395 to 167995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,316 DEBUG Processing 539/673 atomic regions from SNP 161510 to 162110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,362 DEBUG Processing 74/542 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,389 DEBUG Processing 492/569 atomic regions from SNP 147568 to 148168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,416 DEBUG Processing 559/606 atomic regions from SNP 167695 to 168295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,538 DEBUG Processing 540/673 atomic regions from SNP 161810 to 162410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,574 DEBUG Processing 75/542 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,602 DEBUG Processing 493/569 atomic regions from SNP 147868 to 148468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,631 DEBUG Processing 560/606 atomic regions from SNP 167995 to 168595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,748 DEBUG Processing 541/673 atomic regions from SNP 162110 to 162710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,774 DEBUG Processing 76/542 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,810 DEBUG Processing 494/569 atomic regions from SNP 148168 to 148768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,837 DEBUG Processing 561/606 atomic regions from SNP 168295 to 168895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,964 DEBUG Processing 542/673 atomic regions from SNP 162410 to 163010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,974 DEBUG Processing 77/542 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,013 DEBUG Processing 495/569 atomic regions from SNP 148468 to 149068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,036 DEBUG Processing 562/606 atomic regions from SNP 168595 to 169195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,176 DEBUG Processing 78/542 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,181 DEBUG Processing 543/673 atomic regions from SNP 162710 to 163310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,221 DEBUG Processing 496/569 atomic regions from SNP 148768 to 149368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,252 DEBUG Processing 563/606 atomic regions from SNP 168895 to 169495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,376 DEBUG Processing 79/542 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,399 DEBUG Processing 544/673 atomic regions from SNP 163010 to 163610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,428 DEBUG Processing 497/569 atomic regions from SNP 149068 to 149668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,446 DEBUG Processing 564/606 atomic regions from SNP 169195 to 169795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,575 DEBUG Processing 80/542 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,626 DEBUG Processing 545/673 atomic regions from SNP 163310 to 163910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,636 DEBUG Processing 498/569 atomic regions from SNP 149368 to 149968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,643 DEBUG Processing 565/606 atomic regions from SNP 169495 to 170095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,770 DEBUG Processing 81/542 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,839 DEBUG Processing 566/606 atomic regions from SNP 169795 to 170395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,842 DEBUG Processing 499/569 atomic regions from SNP 149668 to 150268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,852 DEBUG Processing 546/673 atomic regions from SNP 163610 to 164210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,963 DEBUG Processing 82/542 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,041 DEBUG Processing 567/606 atomic regions from SNP 170095 to 170695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,046 DEBUG Processing 500/569 atomic regions from SNP 149968 to 150568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,070 DEBUG Processing 547/673 atomic regions from SNP 163910 to 164510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,156 DEBUG Processing 83/542 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,240 DEBUG Processing 568/606 atomic regions from SNP 170395 to 170995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,247 DEBUG Processing 501/569 atomic regions from SNP 150268 to 150868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,302 DEBUG Processing 548/673 atomic regions from SNP 164210 to 164810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,350 DEBUG Processing 84/542 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,446 DEBUG Processing 569/606 atomic regions from SNP 170695 to 171295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,447 DEBUG Processing 502/569 atomic regions from SNP 150568 to 151168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,541 DEBUG Processing 549/673 atomic regions from SNP 164510 to 165110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,546 DEBUG Processing 85/542 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,649 DEBUG Processing 503/569 atomic regions from SNP 150868 to 151468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,653 DEBUG Processing 570/606 atomic regions from SNP 170995 to 171595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,744 DEBUG Processing 86/542 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,774 DEBUG Processing 550/673 atomic regions from SNP 164810 to 165410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,865 DEBUG Processing 571/606 atomic regions from SNP 171295 to 171895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,867 DEBUG Processing 504/569 atomic regions from SNP 151168 to 151768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,939 DEBUG Processing 87/542 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,998 DEBUG Processing 551/673 atomic regions from SNP 165110 to 165710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,077 DEBUG Processing 572/606 atomic regions from SNP 171595 to 172195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,088 DEBUG Processing 505/569 atomic regions from SNP 151468 to 152068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,135 DEBUG Processing 88/542 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,218 DEBUG Processing 552/673 atomic regions from SNP 165410 to 166010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,268 DEBUG Processing 573/606 atomic regions from SNP 171895 to 172495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,307 DEBUG Processing 506/569 atomic regions from SNP 151768 to 152368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,326 DEBUG Processing 89/542 atomic regions from SNP 26488 to 27089 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,445 DEBUG Processing 553/673 atomic regions from SNP 165710 to 166310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,479 DEBUG Processing 574/606 atomic regions from SNP 172195 to 172795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,508 DEBUG Processing 507/569 atomic regions from SNP 152068 to 152668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,519 DEBUG Processing 90/542 atomic regions from SNP 26789 to 27390 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,669 DEBUG Processing 554/673 atomic regions from SNP 166010 to 166610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,702 DEBUG Processing 575/606 atomic regions from SNP 172495 to 173095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,704 DEBUG Processing 508/569 atomic regions from SNP 152368 to 152968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,713 DEBUG Processing 91/542 atomic regions from SNP 27090 to 27691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,906 DEBUG Processing 509/569 atomic regions from SNP 152668 to 153268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,910 DEBUG Processing 555/673 atomic regions from SNP 166310 to 166910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,913 DEBUG Processing 92/542 atomic regions from SNP 27391 to 27992 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,933 DEBUG Processing 576/606 atomic regions from SNP 172795 to 173395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,107 DEBUG Processing 510/569 atomic regions from SNP 152968 to 153568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,114 DEBUG Processing 93/542 atomic regions from SNP 27692 to 28293 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,148 DEBUG Processing 556/673 atomic regions from SNP 166610 to 167210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,167 DEBUG Processing 577/606 atomic regions from SNP 173095 to 173695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,309 DEBUG Processing 511/569 atomic regions from SNP 153268 to 153868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,313 DEBUG Processing 94/542 atomic regions from SNP 27993 to 28594 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,387 DEBUG Processing 557/673 atomic regions from SNP 166910 to 167510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,397 DEBUG Processing 578/606 atomic regions from SNP 173395 to 173995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,508 DEBUG Processing 512/569 atomic regions from SNP 153568 to 154168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,510 DEBUG Processing 95/542 atomic regions from SNP 28294 to 28895 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,619 DEBUG Processing 579/606 atomic regions from SNP 173695 to 174295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,625 DEBUG Processing 558/673 atomic regions from SNP 167210 to 167810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,709 DEBUG Processing 96/542 atomic regions from SNP 28595 to 29196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,710 DEBUG Processing 513/569 atomic regions from SNP 153868 to 154468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,843 DEBUG Processing 580/606 atomic regions from SNP 173995 to 174595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,863 DEBUG Processing 559/673 atomic regions from SNP 167510 to 168110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,906 DEBUG Processing 97/542 atomic regions from SNP 28896 to 29497 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,909 DEBUG Processing 514/569 atomic regions from SNP 154168 to 154768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,068 DEBUG Processing 581/606 atomic regions from SNP 174295 to 174895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,098 DEBUG Processing 560/673 atomic regions from SNP 167810 to 168410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,106 DEBUG Processing 98/542 atomic regions from SNP 29197 to 29798 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,110 DEBUG Processing 515/569 atomic regions from SNP 154468 to 155068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,288 DEBUG Processing 582/606 atomic regions from SNP 174595 to 175195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,309 DEBUG Processing 99/542 atomic regions from SNP 29498 to 30099 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,313 DEBUG Processing 516/569 atomic regions from SNP 154768 to 155368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,314 DEBUG Processing 561/673 atomic regions from SNP 168110 to 168710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,493 DEBUG Processing 583/606 atomic regions from SNP 174895 to 175495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,508 DEBUG Processing 100/542 atomic regions from SNP 29799 to 30400 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,517 DEBUG Processing 517/569 atomic regions from SNP 155068 to 155668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,533 DEBUG Processing 562/673 atomic regions from SNP 168410 to 169010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,706 DEBUG Processing 584/606 atomic regions from SNP 175195 to 175795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,707 DEBUG Processing 101/542 atomic regions from SNP 30100 to 30701 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,727 DEBUG Processing 518/569 atomic regions from SNP 155368 to 155968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,753 DEBUG Processing 563/673 atomic regions from SNP 168710 to 169310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,901 DEBUG Processing 102/542 atomic regions from SNP 30401 to 31002 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,924 DEBUG Processing 585/606 atomic regions from SNP 175495 to 176095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,948 DEBUG Processing 519/569 atomic regions from SNP 155668 to 156268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,965 DEBUG Processing 564/673 atomic regions from SNP 169010 to 169610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,091 DEBUG Processing 103/542 atomic regions from SNP 30702 to 31303 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,142 DEBUG Processing 586/606 atomic regions from SNP 175795 to 176395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,169 DEBUG Processing 520/569 atomic regions from SNP 155968 to 156568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,185 DEBUG Processing 565/673 atomic regions from SNP 169310 to 169910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,280 DEBUG Processing 104/542 atomic regions from SNP 31003 to 31604 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,365 DEBUG Processing 587/606 atomic regions from SNP 176095 to 176695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,402 DEBUG Processing 521/569 atomic regions from SNP 156268 to 156868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,414 DEBUG Processing 566/673 atomic regions from SNP 169610 to 170210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,471 DEBUG Processing 105/542 atomic regions from SNP 31304 to 31905 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,582 DEBUG Processing 588/606 atomic regions from SNP 176395 to 176995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,623 DEBUG Processing 522/569 atomic regions from SNP 156568 to 157168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,641 DEBUG Processing 567/673 atomic regions from SNP 169910 to 170510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,666 DEBUG Processing 106/542 atomic regions from SNP 31605 to 32206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,793 DEBUG Processing 589/606 atomic regions from SNP 176695 to 177295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,846 DEBUG Processing 523/569 atomic regions from SNP 156868 to 157468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,866 DEBUG Processing 107/542 atomic regions from SNP 31906 to 32507 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,888 DEBUG Processing 568/673 atomic regions from SNP 170210 to 170810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,994 DEBUG Processing 590/606 atomic regions from SNP 176995 to 177595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,065 DEBUG Processing 108/542 atomic regions from SNP 32207 to 32808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,070 DEBUG Processing 524/569 atomic regions from SNP 157168 to 157768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,136 DEBUG Processing 569/673 atomic regions from SNP 170510 to 171110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,205 DEBUG Processing 591/606 atomic regions from SNP 177295 to 177895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,260 DEBUG Processing 109/542 atomic regions from SNP 32508 to 33109 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,306 DEBUG Processing 525/569 atomic regions from SNP 157468 to 158068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,380 DEBUG Processing 570/673 atomic regions from SNP 170810 to 171410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,420 DEBUG Processing 592/606 atomic regions from SNP 177595 to 178195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,456 DEBUG Processing 110/542 atomic regions from SNP 32809 to 33410 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,532 DEBUG Processing 526/569 atomic regions from SNP 157768 to 158368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,593 DEBUG Processing 571/673 atomic regions from SNP 171110 to 171710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,624 DEBUG Processing 593/606 atomic regions from SNP 177895 to 178495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,648 DEBUG Processing 111/542 atomic regions from SNP 33110 to 33711 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,754 DEBUG Processing 527/569 atomic regions from SNP 158068 to 158668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,799 DEBUG Processing 572/673 atomic regions from SNP 171410 to 172010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,820 DEBUG Processing 594/606 atomic regions from SNP 178195 to 178795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,852 DEBUG Processing 112/542 atomic regions from SNP 33411 to 34012 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,981 DEBUG Processing 528/569 atomic regions from SNP 158368 to 158968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,016 DEBUG Processing 573/673 atomic regions from SNP 171710 to 172310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,022 DEBUG Processing 595/606 atomic regions from SNP 178495 to 179095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,074 DEBUG Processing 113/542 atomic regions from SNP 33712 to 34313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,215 DEBUG Processing 529/569 atomic regions from SNP 158668 to 159268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,231 DEBUG Processing 596/606 atomic regions from SNP 178795 to 179395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,253 DEBUG Processing 574/673 atomic regions from SNP 172010 to 172610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,293 DEBUG Processing 114/542 atomic regions from SNP 34013 to 34614 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,449 DEBUG Processing 530/569 atomic regions from SNP 158968 to 159568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,454 DEBUG Processing 597/606 atomic regions from SNP 179095 to 179695 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,482 DEBUG Processing 575/673 atomic regions from SNP 172310 to 172910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,508 DEBUG Processing 115/542 atomic regions from SNP 34314 to 34915 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,682 DEBUG Processing 598/606 atomic regions from SNP 179395 to 179995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,688 DEBUG Processing 531/569 atomic regions from SNP 159268 to 159868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,695 DEBUG Processing 576/673 atomic regions from SNP 172610 to 173210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,731 DEBUG Processing 116/542 atomic regions from SNP 34615 to 35216 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,905 DEBUG Processing 599/606 atomic regions from SNP 179695 to 180295 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,908 DEBUG Processing 577/673 atomic regions from SNP 172910 to 173510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,921 DEBUG Processing 532/569 atomic regions from SNP 159568 to 160168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,953 DEBUG Processing 117/542 atomic regions from SNP 34916 to 35517 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,114 DEBUG Processing 578/673 atomic regions from SNP 173210 to 173810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,121 DEBUG Processing 600/606 atomic regions from SNP 179995 to 180595 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,140 DEBUG Processing 533/569 atomic regions from SNP 159868 to 160468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,177 DEBUG Processing 118/542 atomic regions from SNP 35217 to 35818 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,321 DEBUG Processing 579/673 atomic regions from SNP 173510 to 174110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,330 DEBUG Processing 601/606 atomic regions from SNP 180295 to 180895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,363 DEBUG Processing 534/569 atomic regions from SNP 160168 to 160768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,402 DEBUG Processing 119/542 atomic regions from SNP 35518 to 36119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,526 DEBUG Processing 580/673 atomic regions from SNP 173810 to 174410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,535 DEBUG Processing 602/606 atomic regions from SNP 180595 to 181195 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,590 DEBUG Processing 535/569 atomic regions from SNP 160468 to 161068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,619 DEBUG Processing 120/542 atomic regions from SNP 35819 to 36420 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,731 DEBUG Processing 581/673 atomic regions from SNP 174110 to 174710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,748 DEBUG Processing 603/606 atomic regions from SNP 180895 to 181495 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,813 DEBUG Processing 536/569 atomic regions from SNP 160768 to 161368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,834 DEBUG Processing 121/542 atomic regions from SNP 36120 to 36721 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,946 DEBUG Processing 582/673 atomic regions from SNP 174410 to 175010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,965 DEBUG Processing 604/606 atomic regions from SNP 181195 to 181795 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,039 DEBUG Processing 537/569 atomic regions from SNP 161068 to 161668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,045 DEBUG Processing 122/542 atomic regions from SNP 36421 to 37022 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,165 DEBUG Processing 583/673 atomic regions from SNP 174710 to 175310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,182 DEBUG Processing 605/606 atomic regions from SNP 181495 to 182095 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,236 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:57:54,258 DEBUG Processing 538/569 atomic regions from SNP 161368 to 161968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,260 DEBUG Processing 123/542 atomic regions from SNP 36722 to 37323 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,377 DEBUG Processing 606/606 atomic regions from SNP 181795 to 182395 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,401 DEBUG Processing 584/673 atomic regions from SNP 175010 to 175610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,478 DEBUG Processing 539/569 atomic regions from SNP 161668 to 162268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,478 DEBUG Processing 124/542 atomic regions from SNP 37023 to 37624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,491 DEBUG Unique SNPs positions in subchromosome 1: 182396 2025-01-31 09:57:54,623 DEBUG Processing 585/673 atomic regions from SNP 175310 to 175910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,696 DEBUG Processing 540/569 atomic regions from SNP 161968 to 162568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,697 DEBUG Processing 125/542 atomic regions from SNP 37324 to 37925 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,834 DEBUG Processing 586/673 atomic regions from SNP 175610 to 176210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,910 DEBUG Processing 541/569 atomic regions from SNP 162268 to 162868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,916 DEBUG Processing 126/542 atomic regions from SNP 37625 to 38226 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,053 DEBUG Processing 587/673 atomic regions from SNP 175910 to 176510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,127 DEBUG Processing 542/569 atomic regions from SNP 162568 to 163168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,144 DEBUG Processing 127/542 atomic regions from SNP 37926 to 38527 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,279 DEBUG Processing 588/673 atomic regions from SNP 176210 to 176810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,355 DEBUG Processing 543/569 atomic regions from SNP 162868 to 163468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,366 DEBUG Processing 128/542 atomic regions from SNP 38227 to 38828 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,503 DEBUG Processing 589/673 atomic regions from SNP 176510 to 177110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,585 DEBUG Processing 544/569 atomic regions from SNP 163168 to 163768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,587 DEBUG Processing 129/542 atomic regions from SNP 38528 to 39129 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,735 DEBUG Processing 590/673 atomic regions from SNP 176810 to 177410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,797 DEBUG Processing 130/542 atomic regions from SNP 38829 to 39430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,808 DEBUG Processing 545/569 atomic regions from SNP 163468 to 164068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,957 DEBUG Processing 591/673 atomic regions from SNP 177110 to 177710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,009 DEBUG Processing 131/542 atomic regions from SNP 39130 to 39731 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,030 DEBUG Processing 546/569 atomic regions from SNP 163768 to 164368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,163 DEBUG Processing 592/673 atomic regions from SNP 177410 to 178010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,224 DEBUG Processing 132/542 atomic regions from SNP 39431 to 40032 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,259 DEBUG Processing 547/569 atomic regions from SNP 164068 to 164668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,371 DEBUG Processing 593/673 atomic regions from SNP 177710 to 178310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,436 DEBUG Processing 133/542 atomic regions from SNP 39732 to 40333 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,478 DEBUG Processing 548/569 atomic regions from SNP 164368 to 164968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,568 DEBUG Processing 594/673 atomic regions from SNP 178010 to 178610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,655 DEBUG Processing 134/542 atomic regions from SNP 40033 to 40634 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,696 DEBUG Processing 549/569 atomic regions from SNP 164668 to 165268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,767 DEBUG Processing 595/673 atomic regions from SNP 178310 to 178910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,874 DEBUG Processing 135/542 atomic regions from SNP 40334 to 40935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,912 DEBUG Processing 550/569 atomic regions from SNP 164968 to 165568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,974 DEBUG Processing 596/673 atomic regions from SNP 178610 to 179210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,087 DEBUG Processing 136/542 atomic regions from SNP 40635 to 41236 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,120 DEBUG Processing 551/569 atomic regions from SNP 165268 to 165868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,175 DEBUG Processing 597/673 atomic regions from SNP 178910 to 179510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,296 DEBUG Processing 137/542 atomic regions from SNP 40936 to 41537 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,322 DEBUG Processing 552/569 atomic regions from SNP 165568 to 166168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,373 DEBUG Processing 598/673 atomic regions from SNP 179210 to 179810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,511 DEBUG Processing 138/542 atomic regions from SNP 41237 to 41838 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,528 DEBUG Processing 553/569 atomic regions from SNP 165868 to 166468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,572 DEBUG Processing 599/673 atomic regions from SNP 179510 to 180110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,726 DEBUG Processing 139/542 atomic regions from SNP 41538 to 42139 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,735 DEBUG Processing 554/569 atomic regions from SNP 166168 to 166768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,774 DEBUG Processing 600/673 atomic regions from SNP 179810 to 180410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,939 DEBUG Processing 140/542 atomic regions from SNP 41839 to 42440 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,942 DEBUG Processing 555/569 atomic regions from SNP 166468 to 167068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,977 DEBUG Processing 601/673 atomic regions from SNP 180110 to 180710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,152 DEBUG Processing 141/542 atomic regions from SNP 42140 to 42741 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,152 DEBUG Processing 556/569 atomic regions from SNP 166768 to 167368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,180 DEBUG Processing 602/673 atomic regions from SNP 180410 to 181010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,361 DEBUG Processing 557/569 atomic regions from SNP 167068 to 167668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,371 DEBUG Processing 142/542 atomic regions from SNP 42441 to 43042 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,387 DEBUG Processing 603/673 atomic regions from SNP 180710 to 181310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,579 DEBUG Processing 558/569 atomic regions from SNP 167368 to 167968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,586 DEBUG Processing 143/542 atomic regions from SNP 42742 to 43343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,602 DEBUG Processing 604/673 atomic regions from SNP 181010 to 181610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,794 DEBUG Processing 144/542 atomic regions from SNP 43043 to 43644 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,801 DEBUG Processing 559/569 atomic regions from SNP 167668 to 168268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,822 DEBUG Processing 605/673 atomic regions from SNP 181310 to 181910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,006 DEBUG Processing 145/542 atomic regions from SNP 43344 to 43945 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,014 DEBUG Processing 560/569 atomic regions from SNP 167968 to 168568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,032 DEBUG Processing 606/673 atomic regions from SNP 181610 to 182210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,220 DEBUG Processing 146/542 atomic regions from SNP 43645 to 44246 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,221 DEBUG Processing 561/569 atomic regions from SNP 168268 to 168868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,235 DEBUG Processing 607/673 atomic regions from SNP 181910 to 182510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,434 DEBUG Processing 147/542 atomic regions from SNP 43946 to 44547 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,434 DEBUG Processing 562/569 atomic regions from SNP 168568 to 169168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,450 DEBUG Processing 608/673 atomic regions from SNP 182210 to 182810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,646 DEBUG Processing 148/542 atomic regions from SNP 44247 to 44848 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,650 DEBUG Processing 563/569 atomic regions from SNP 168868 to 169468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,671 DEBUG Processing 609/673 atomic regions from SNP 182510 to 183110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,865 DEBUG Processing 149/542 atomic regions from SNP 44548 to 45149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,868 DEBUG Processing 564/569 atomic regions from SNP 169168 to 169768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,879 DEBUG Processing 610/673 atomic regions from SNP 182810 to 183410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,076 DEBUG Processing 565/569 atomic regions from SNP 169468 to 170068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,080 DEBUG Processing 611/673 atomic regions from SNP 183110 to 183710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,082 DEBUG Processing 150/542 atomic regions from SNP 44849 to 45450 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,284 DEBUG Processing 612/673 atomic regions from SNP 183410 to 184010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,292 DEBUG Processing 566/569 atomic regions from SNP 169768 to 170368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,294 DEBUG Processing 151/542 atomic regions from SNP 45150 to 45751 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,489 DEBUG Processing 613/673 atomic regions from SNP 183710 to 184310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,507 DEBUG Processing 567/569 atomic regions from SNP 170068 to 170668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,509 DEBUG Processing 152/542 atomic regions from SNP 45451 to 46052 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,634 DEBUG Subchromosome time: 154.94808483996894, subchromosome SNPs: 182396 2025-01-31 09:58:00,634 DEBUG Estimated BADs: [1.92, 3.83, 1.28, 3.83, 1.92, 3.83, 7.66, 3.83, 1.28, 1.92, 7.66, 3.83, 1.92, 7.66, 11.49, 7.66, 3.83, 7.66] SNP counts: [3412, 15383, 21336, 3613, 5720, 9027, 1503, 14426, 5730, 16538, 2423, 18882, 6379, 5342, 12380, 6505, 23682, 10115] SNP IDs counts: [3412, 15383, 21336, 3613, 5720, 9027, 1503, 14426, 5730, 16538, 2423, 18882, 6379, 5342, 12380, 6505, 23682, 10115] Critical gap: 542499bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.09Mbp, 13.60Mbp, 25.82Mbp, 27.79Mbp, 30.99Mbp, 36.11Mbp, 36.92Mbp, 45.01Mbp, 48.28Mbp, 57.57Mbp, 58.84Mbp, 69.38Mbp, 72.90Mbp, 75.80Mbp, 82.38Mbp, 85.84Mbp, 98.51Mbp, 104.04Mbp] 2025-01-31 09:58:00,634 DEBUG chr15 time: 154.94857607397716 s 2025-01-31 09:58:00,698 DEBUG Processing 614/673 atomic regions from SNP 184010 to 184610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,725 DEBUG Processing 568/569 atomic regions from SNP 170368 to 170968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,726 DEBUG chr15: Fitting background model for 18 segments 2025-01-31 09:58:00,727 DEBUG Processing 153/542 atomic regions from SNP 45752 to 46353 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,904 DEBUG Processing 615/673 atomic regions from SNP 184310 to 184910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,934 DEBUG Processing 154/542 atomic regions from SNP 46053 to 46654 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,942 DEBUG Processing 569/569 atomic regions from SNP 170668 to 171268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,093 DEBUG Unique SNPs positions in subchromosome 1: 171269 2025-01-31 09:58:01,115 DEBUG Processing 616/673 atomic regions from SNP 184610 to 185210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,140 DEBUG Processing 155/542 atomic regions from SNP 46354 to 46955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,327 DEBUG Processing 617/673 atomic regions from SNP 184910 to 185510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,334 DEBUG Processing 156/542 atomic regions from SNP 46655 to 47256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,545 DEBUG Processing 157/542 atomic regions from SNP 46956 to 47557 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,555 DEBUG Processing 618/673 atomic regions from SNP 185210 to 185810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,747 DEBUG Processing 158/542 atomic regions from SNP 47257 to 47858 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,793 DEBUG Processing 619/673 atomic regions from SNP 185510 to 186110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,944 DEBUG Processing 159/542 atomic regions from SNP 47558 to 48159 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,031 DEBUG Processing 620/673 atomic regions from SNP 185810 to 186410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,145 DEBUG Processing 160/542 atomic regions from SNP 47859 to 48460 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,201 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:58:02,203 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:58:02,263 DEBUG Processing 621/673 atomic regions from SNP 186110 to 186710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,350 DEBUG Processing 161/542 atomic regions from SNP 48160 to 48761 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,500 DEBUG Processing 622/673 atomic regions from SNP 186410 to 187010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,556 DEBUG Processing 162/542 atomic regions from SNP 48461 to 49062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,726 DEBUG Processing 623/673 atomic regions from SNP 186710 to 187310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,765 DEBUG Processing 163/542 atomic regions from SNP 48762 to 49363 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,074 DEBUG Processing 164/542 atomic regions from SNP 49063 to 49664 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,085 DEBUG Processing 624/673 atomic regions from SNP 187010 to 187610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,322 DEBUG Processing 165/542 atomic regions from SNP 49364 to 49965 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,375 DEBUG Processing 625/673 atomic regions from SNP 187310 to 187910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,536 DEBUG Processing 166/542 atomic regions from SNP 49665 to 50266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,595 DEBUG Subchromosome time: 144.63810895802453, subchromosome SNPs: 171269 2025-01-31 09:58:03,595 DEBUG Estimated BADs: [6.19, 3.10, 6.19, 3.10, 1.55, 0.77, 3.10, 1.03, 1.55, 3.10, 9.29, 6.19] SNP counts: [5214, 19733, 2545, 39131, 23182, 3850, 7201, 8709, 41468, 5016, 8133, 7087] SNP IDs counts: [5214, 19733, 2545, 39131, 23182, 3850, 7201, 8709, 41468, 5016, 8133, 7087] Critical gap: 527604bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.02Mbp], 6.20Mbp, 17.04Mbp, 18.39Mbp, 39.64Mbp, 52.60Mbp, 54.81Mbp, 58.94Mbp, 64.02Mbp, 87.33Mbp, 90.07Mbp, 94.34Mbp, 98.21Mbp] 2025-01-31 09:58:03,595 DEBUG chr16 time: 144.6385653410107 s 2025-01-31 09:58:03,640 DEBUG Processing 626/673 atomic regions from SNP 187610 to 188210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,731 DEBUG chr16: Fitting background model for 12 segments 2025-01-31 09:58:03,824 DEBUG Processing 167/542 atomic regions from SNP 49966 to 50567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,925 DEBUG Processing 627/673 atomic regions from SNP 187910 to 188510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,071 DEBUG Processing 168/542 atomic regions from SNP 50267 to 50868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,200 DEBUG Processing 628/673 atomic regions from SNP 188210 to 188810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,226 DEBUG chrY total SNP count: 147 2025-01-31 09:58:04,226 DEBUG chrY length: 91744698 2025-01-31 09:58:04,226 DEBUG ----------------------------------------- 2025-01-31 09:58:04,226 INFO Processing SNPs in chrY 2025-01-31 09:58:04,227 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 10), (10, 18), (18, 31), (31, 52), (52, 68), (68, 86), (86, 92), (92, 99), (99, 101), (101, 102), (102, 103), (103, 104), (104, 105), (105, 147)] 2025-01-31 09:58:04,228 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [10, 8, 13, 21, 16, 18, 6, 7, 2, 1, 1, 1, 1, 42] SNP IDs counts: [10, 8, 13, 21, 16, 18, 6, 7, 2, 1, 1, 1, 1, 42] Critical gap: 18854bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[1.29Mbp], 1.30Mbp[0.02Mbp], 1.33Mbp[0.62Mbp], 1.95Mbp[0.56Mbp], 2.53Mbp[1.45Mbp], 4.01Mbp[0.05Mbp], 4.07Mbp[0.08Mbp], 4.15Mbp[6.55Mbp], 10.71Mbp[12.01Mbp], 22.72Mbp[17.30Mbp], 40.02Mbp[3.90Mbp], 43.92Mbp[40.80Mbp], 84.72Mbp[2.03Mbp], 86.75Mbp[3.97Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 09:58:04,228 DEBUG chrY time: 0.0017212589737027884 s 2025-01-31 09:58:04,311 DEBUG Processing 169/542 atomic regions from SNP 50568 to 51169 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,465 DEBUG Processing 629/673 atomic regions from SNP 188510 to 189110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,525 DEBUG Processing 170/542 atomic regions from SNP 50869 to 51470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,729 DEBUG Processing 630/673 atomic regions from SNP 188810 to 189410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,737 DEBUG Processing 171/542 atomic regions from SNP 51170 to 51770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,991 DEBUG Processing 172/542 atomic regions from SNP 51470 to 52070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,012 DEBUG Processing 631/673 atomic regions from SNP 189110 to 189710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,214 DEBUG Processing 173/542 atomic regions from SNP 51770 to 52370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,286 DEBUG Processing 632/673 atomic regions from SNP 189410 to 190010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,414 DEBUG Processing 174/542 atomic regions from SNP 52070 to 52670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,542 DEBUG Processing 633/673 atomic regions from SNP 189710 to 190310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,637 DEBUG Processing 175/542 atomic regions from SNP 52370 to 52970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,790 DEBUG Processing 634/673 atomic regions from SNP 190010 to 190610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,859 DEBUG Processing 176/542 atomic regions from SNP 52670 to 53270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,031 DEBUG Processing 635/673 atomic regions from SNP 190310 to 190910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,086 DEBUG Processing 177/542 atomic regions from SNP 52970 to 53570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,270 DEBUG Processing 636/673 atomic regions from SNP 190610 to 191210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,312 DEBUG Processing 178/542 atomic regions from SNP 53270 to 53870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,485 DEBUG Processing 637/673 atomic regions from SNP 190910 to 191510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,527 DEBUG Processing 179/542 atomic regions from SNP 53570 to 54170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,705 DEBUG Processing 638/673 atomic regions from SNP 191210 to 191810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,730 DEBUG Processing 180/542 atomic regions from SNP 53870 to 54470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,925 DEBUG Processing 639/673 atomic regions from SNP 191510 to 192110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,956 DEBUG Processing 181/542 atomic regions from SNP 54170 to 54770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,019 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:58:07,151 DEBUG Processing 640/673 atomic regions from SNP 191810 to 192410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,193 DEBUG Processing 182/542 atomic regions from SNP 54470 to 55070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,369 DEBUG Processing 641/673 atomic regions from SNP 192110 to 192710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,422 DEBUG Processing 183/542 atomic regions from SNP 54770 to 55370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,583 DEBUG Processing 642/673 atomic regions from SNP 192410 to 193010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,661 DEBUG Processing 184/542 atomic regions from SNP 55070 to 55670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,805 DEBUG Processing 643/673 atomic regions from SNP 192710 to 193310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,908 DEBUG Processing 185/542 atomic regions from SNP 55370 to 55970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,033 DEBUG Processing 644/673 atomic regions from SNP 193010 to 193610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,143 DEBUG Processing 186/542 atomic regions from SNP 55670 to 56270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,261 DEBUG Processing 645/673 atomic regions from SNP 193310 to 193910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,380 DEBUG Processing 187/542 atomic regions from SNP 55970 to 56570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,478 DEBUG Processing 646/673 atomic regions from SNP 193610 to 194210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,601 DEBUG Processing 188/542 atomic regions from SNP 56270 to 56870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,691 DEBUG Processing 647/673 atomic regions from SNP 193910 to 194510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,834 DEBUG Processing 189/542 atomic regions from SNP 56570 to 57170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,907 DEBUG Processing 648/673 atomic regions from SNP 194210 to 194810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,050 DEBUG Processing 190/542 atomic regions from SNP 56870 to 57470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,121 DEBUG Processing 649/673 atomic regions from SNP 194510 to 195110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,274 DEBUG Processing 191/542 atomic regions from SNP 57170 to 57770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,344 DEBUG Processing 650/673 atomic regions from SNP 194810 to 195410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,472 DEBUG Processing 192/542 atomic regions from SNP 57470 to 58070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,561 DEBUG Processing 651/673 atomic regions from SNP 195110 to 195710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,674 DEBUG Processing 193/542 atomic regions from SNP 57770 to 58370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,798 DEBUG Processing 652/673 atomic regions from SNP 195410 to 196010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,884 DEBUG Processing 194/542 atomic regions from SNP 58070 to 58670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,022 DEBUG Processing 653/673 atomic regions from SNP 195710 to 196310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,087 DEBUG Processing 195/542 atomic regions from SNP 58370 to 58970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,242 DEBUG Processing 654/673 atomic regions from SNP 196010 to 196610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,284 DEBUG Processing 196/542 atomic regions from SNP 58670 to 59270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,470 DEBUG Processing 655/673 atomic regions from SNP 196310 to 196910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,490 DEBUG Processing 197/542 atomic regions from SNP 58970 to 59570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,699 DEBUG Processing 198/542 atomic regions from SNP 59270 to 59870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,701 DEBUG Processing 656/673 atomic regions from SNP 196610 to 197210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,904 DEBUG Processing 199/542 atomic regions from SNP 59570 to 60170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,940 DEBUG Processing 657/673 atomic regions from SNP 196910 to 197510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,108 DEBUG Processing 200/542 atomic regions from SNP 59870 to 60470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,188 DEBUG Processing 658/673 atomic regions from SNP 197210 to 197810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,304 DEBUG Processing 201/542 atomic regions from SNP 60170 to 60770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,415 DEBUG Processing 659/673 atomic regions from SNP 197510 to 198110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,496 DEBUG Processing 202/542 atomic regions from SNP 60470 to 61070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,629 DEBUG Processing 660/673 atomic regions from SNP 197810 to 198410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,689 DEBUG Processing 203/542 atomic regions from SNP 60770 to 61370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,844 DEBUG Processing 661/673 atomic regions from SNP 198110 to 198710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,884 DEBUG Processing 204/542 atomic regions from SNP 61070 to 61670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,059 DEBUG Processing 662/673 atomic regions from SNP 198410 to 199010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,078 DEBUG Processing 205/542 atomic regions from SNP 61370 to 61970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,273 DEBUG Processing 206/542 atomic regions from SNP 61670 to 62270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,275 DEBUG Processing 663/673 atomic regions from SNP 198710 to 199310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,471 DEBUG Processing 207/542 atomic regions from SNP 61970 to 62570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,493 DEBUG Processing 664/673 atomic regions from SNP 199010 to 199610 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,662 DEBUG Processing 208/542 atomic regions from SNP 62270 to 62870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,726 DEBUG Processing 665/673 atomic regions from SNP 199310 to 199910 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,847 DEBUG Processing 209/542 atomic regions from SNP 62570 to 63170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,941 DEBUG Processing 666/673 atomic regions from SNP 199610 to 200210 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,073 DEBUG Processing 210/542 atomic regions from SNP 62870 to 63470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,197 DEBUG Processing 667/673 atomic regions from SNP 199910 to 200510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,263 DEBUG Processing 211/542 atomic regions from SNP 63170 to 63770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,407 DEBUG Processing 668/673 atomic regions from SNP 200210 to 200810 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,457 DEBUG Processing 212/542 atomic regions from SNP 63470 to 64070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,619 DEBUG Processing 669/673 atomic regions from SNP 200510 to 201110 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,653 DEBUG Processing 213/542 atomic regions from SNP 63770 to 64370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,825 DEBUG Processing 670/673 atomic regions from SNP 200810 to 201410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,842 DEBUG Processing 214/542 atomic regions from SNP 64070 to 64670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,030 DEBUG Processing 671/673 atomic regions from SNP 201110 to 201710 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,032 DEBUG Processing 215/542 atomic regions from SNP 64370 to 64970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,224 DEBUG Processing 216/542 atomic regions from SNP 64670 to 65270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,240 DEBUG Processing 672/673 atomic regions from SNP 201410 to 202010 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,419 DEBUG Processing 217/542 atomic regions from SNP 64970 to 65570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,457 DEBUG Processing 673/673 atomic regions from SNP 201710 to 202310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,592 DEBUG Unique SNPs positions in subchromosome 1: 202311 2025-01-31 09:58:14,616 DEBUG Processing 218/542 atomic regions from SNP 65270 to 65870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,801 DEBUG Processing 219/542 atomic regions from SNP 65570 to 66170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,995 DEBUG Processing 220/542 atomic regions from SNP 65870 to 66470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,186 DEBUG Processing 221/542 atomic regions from SNP 66170 to 66770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,375 DEBUG Processing 222/542 atomic regions from SNP 66470 to 67070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,567 DEBUG Processing 223/542 atomic regions from SNP 66770 to 67370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,762 DEBUG Processing 224/542 atomic regions from SNP 67070 to 67670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,967 DEBUG Processing 225/542 atomic regions from SNP 67370 to 67970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,168 DEBUG Processing 226/542 atomic regions from SNP 67670 to 68270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,382 DEBUG Processing 227/542 atomic regions from SNP 67970 to 68570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,645 DEBUG Processing 228/542 atomic regions from SNP 68270 to 68870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,887 DEBUG Processing 229/542 atomic regions from SNP 68570 to 69170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,976 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:58:16,977 DEBUG chr18: Signal quantile: 0.995. signal threshold: 17. Best RMSEA: 0.049 2025-01-31 09:58:17,125 DEBUG Processing 230/542 atomic regions from SNP 68870 to 69470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,369 DEBUG Processing 231/542 atomic regions from SNP 69170 to 69770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,928 DEBUG Processing 232/542 atomic regions from SNP 69470 to 70070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,101 DEBUG Subchromosome time: 177.99870097497478, subchromosome SNPs: 202311 2025-01-31 09:58:18,102 DEBUG Estimated BADs: [2.86, 1.43, 2.86, 0.95, 1.43, 2.86, 5.73, 2.86, 0.95, 2.86, 8.59, 2.86] SNP counts: [47012, 27296, 20095, 5703, 9861, 20143, 13202, 8987, 8705, 24307, 5098, 11902] SNP IDs counts: [47012, 27296, 20095, 5703, 9861, 20143, 13202, 8987, 8705, 24307, 5098, 11902] Critical gap: 597564bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 33.14Mbp, 48.75Mbp, 60.18Mbp, 63.51Mbp, 69.13Mbp, 79.96Mbp, 86.99Mbp, 92.35Mbp, 97.35Mbp, 110.43Mbp, 113.09Mbp, 120.13Mbp] 2025-01-31 09:58:18,102 DEBUG chr12 time: 177.99914647894911 s 2025-01-31 09:58:18,134 DEBUG Processing 233/542 atomic regions from SNP 69770 to 70370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,219 DEBUG chr12: Fitting background model for 12 segments 2025-01-31 09:58:18,369 DEBUG Processing 234/542 atomic regions from SNP 70070 to 70670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,652 DEBUG Processing 235/542 atomic regions from SNP 70370 to 70970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,858 DEBUG Processing 236/542 atomic regions from SNP 70670 to 71270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,059 DEBUG Processing 237/542 atomic regions from SNP 70970 to 71570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,267 DEBUG Processing 238/542 atomic regions from SNP 71270 to 71870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,292 DEBUG chr18 total SNP count: 158322 2025-01-31 09:58:19,292 DEBUG chr18 length: 90702639 2025-01-31 09:58:19,292 DEBUG ----------------------------------------- 2025-01-31 09:58:19,293 INFO Processing SNPs in chr18 2025-01-31 09:58:19,446 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 158322)] 2025-01-31 09:58:19,471 DEBUG Processing 239/542 atomic regions from SNP 71570 to 72170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,552 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:19,670 DEBUG Processing 240/542 atomic regions from SNP 71870 to 72470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,873 DEBUG Processing 241/542 atomic regions from SNP 72170 to 72770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,084 DEBUG Processing 242/542 atomic regions from SNP 72470 to 73070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,290 DEBUG Processing 243/542 atomic regions from SNP 72770 to 73370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,513 DEBUG Processing 244/542 atomic regions from SNP 73070 to 73670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,746 DEBUG Processing 245/542 atomic regions from SNP 73370 to 73970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,959 DEBUG Processing 246/542 atomic regions from SNP 73670 to 74270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,176 DEBUG Processing 247/542 atomic regions from SNP 73970 to 74570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,395 DEBUG Processing 248/542 atomic regions from SNP 74270 to 74870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,610 DEBUG Processing 249/542 atomic regions from SNP 74570 to 75170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,825 DEBUG Processing 250/542 atomic regions from SNP 74870 to 75470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,058 DEBUG Processing 251/542 atomic regions from SNP 75170 to 75770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,285 DEBUG Processing 252/542 atomic regions from SNP 75470 to 76070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,506 DEBUG Processing 253/542 atomic regions from SNP 75770 to 76370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,708 DEBUG Processing 254/542 atomic regions from SNP 76070 to 76670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,913 DEBUG Processing 255/542 atomic regions from SNP 76370 to 76970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,129 DEBUG Processing 256/542 atomic regions from SNP 76670 to 77270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,365 DEBUG Processing 257/542 atomic regions from SNP 76970 to 77570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,609 DEBUG Processing 258/542 atomic regions from SNP 77270 to 77870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,905 DEBUG Processing 259/542 atomic regions from SNP 77570 to 78170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,129 DEBUG Processing 260/542 atomic regions from SNP 77870 to 78470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,339 DEBUG Processing 261/542 atomic regions from SNP 78170 to 78770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,544 DEBUG Processing 262/542 atomic regions from SNP 78470 to 79070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,737 DEBUG Processing 263/542 atomic regions from SNP 78770 to 79370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,925 DEBUG Processing 264/542 atomic regions from SNP 79070 to 79670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,109 DEBUG Processing 265/542 atomic regions from SNP 79370 to 79970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,299 DEBUG Processing 266/542 atomic regions from SNP 79670 to 80270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,499 DEBUG Processing 267/542 atomic regions from SNP 79970 to 80570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,706 DEBUG Processing 268/542 atomic regions from SNP 80270 to 80870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,759 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:58:25,912 DEBUG Processing 269/542 atomic regions from SNP 80570 to 81170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,124 DEBUG Processing 270/542 atomic regions from SNP 80870 to 81470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,335 DEBUG Processing 271/542 atomic regions from SNP 81170 to 81770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,546 DEBUG Processing 272/542 atomic regions from SNP 81470 to 82070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,757 DEBUG Processing 273/542 atomic regions from SNP 81770 to 82370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,970 DEBUG Processing 274/542 atomic regions from SNP 82070 to 82670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,180 DEBUG Processing 275/542 atomic regions from SNP 82370 to 82970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,383 DEBUG Processing 276/542 atomic regions from SNP 82670 to 83270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,587 DEBUG Processing 277/542 atomic regions from SNP 82970 to 83570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,788 DEBUG Processing 278/542 atomic regions from SNP 83270 to 83870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,992 DEBUG Processing 279/542 atomic regions from SNP 83570 to 84170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,297 DEBUG Processing 280/542 atomic regions from SNP 83870 to 84470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,567 DEBUG Processing 281/542 atomic regions from SNP 84170 to 84770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,786 DEBUG Processing 282/542 atomic regions from SNP 84470 to 85070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,004 DEBUG Processing 283/542 atomic regions from SNP 84770 to 85370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,193 DEBUG Processing 284/542 atomic regions from SNP 85070 to 85670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,388 DEBUG Processing 285/542 atomic regions from SNP 85370 to 85970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,580 DEBUG Processing 286/542 atomic regions from SNP 85670 to 86270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,787 DEBUG Processing 287/542 atomic regions from SNP 85970 to 86570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,985 DEBUG Processing 288/542 atomic regions from SNP 86270 to 86870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,183 DEBUG Processing 289/542 atomic regions from SNP 86570 to 87170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,376 DEBUG Processing 290/542 atomic regions from SNP 86870 to 87470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,602 DEBUG Processing 291/542 atomic regions from SNP 87170 to 87770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,891 DEBUG Processing 292/542 atomic regions from SNP 87470 to 88070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,107 DEBUG Processing 293/542 atomic regions from SNP 87770 to 88370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,351 DEBUG Processing 294/542 atomic regions from SNP 88070 to 88670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,564 DEBUG Processing 295/542 atomic regions from SNP 88370 to 88970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,775 DEBUG Processing 296/542 atomic regions from SNP 88670 to 89270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,976 DEBUG Processing 297/542 atomic regions from SNP 88970 to 89570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,174 DEBUG Processing 298/542 atomic regions from SNP 89270 to 89870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,409 DEBUG Processing 299/542 atomic regions from SNP 89570 to 90170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,980 DEBUG Processing 300/542 atomic regions from SNP 89870 to 90470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,319 DEBUG Processing 301/542 atomic regions from SNP 90170 to 90770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,931 DEBUG Processing 302/542 atomic regions from SNP 90470 to 91070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,605 DEBUG Processing 303/542 atomic regions from SNP 90770 to 91370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,793 DEBUG Processing 304/542 atomic regions from SNP 91070 to 91670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,985 DEBUG Processing 305/542 atomic regions from SNP 91370 to 91970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,100 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:58:35,101 DEBUG chr19: Signal quantile: 0.995. signal threshold: 30. Best RMSEA: 0.030 2025-01-31 09:58:35,183 DEBUG Processing 306/542 atomic regions from SNP 91670 to 92270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,399 DEBUG Processing 307/542 atomic regions from SNP 91970 to 92570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,642 DEBUG Processing 308/542 atomic regions from SNP 92270 to 92870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,888 DEBUG Processing 309/542 atomic regions from SNP 92570 to 93170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,128 DEBUG Processing 310/542 atomic regions from SNP 92870 to 93470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,259 DEBUG chr19 total SNP count: 106442 2025-01-31 09:58:36,259 DEBUG chr19 length: 61431566 2025-01-31 09:58:36,259 DEBUG ----------------------------------------- 2025-01-31 09:58:36,260 INFO Processing SNPs in chr19 2025-01-31 09:58:36,362 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 106442)] 2025-01-31 09:58:36,365 DEBUG Processing 311/542 atomic regions from SNP 93170 to 93770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,433 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:36,605 DEBUG Processing 312/542 atomic regions from SNP 93470 to 94070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,830 DEBUG Processing 313/542 atomic regions from SNP 93770 to 94370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,060 DEBUG Processing 314/542 atomic regions from SNP 94070 to 94670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,283 DEBUG Processing 315/542 atomic regions from SNP 94370 to 94970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,503 DEBUG Processing 316/542 atomic regions from SNP 94670 to 95270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,701 DEBUG Processing 317/542 atomic regions from SNP 94970 to 95570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,890 DEBUG Processing 318/542 atomic regions from SNP 95270 to 95870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,087 DEBUG Processing 319/542 atomic regions from SNP 95570 to 96170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,283 DEBUG Processing 320/542 atomic regions from SNP 95870 to 96470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,475 DEBUG Processing 321/542 atomic regions from SNP 96170 to 96770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,668 DEBUG Processing 322/542 atomic regions from SNP 96470 to 97070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,896 DEBUG Processing 323/542 atomic regions from SNP 96770 to 97370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,927 DEBUG Segmenting atomic regions: 2025-01-31 09:58:38,995 DEBUG Processing 1/526 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,081 DEBUG Processing 324/542 atomic regions from SNP 97070 to 97670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,175 DEBUG Processing 2/526 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,266 DEBUG Processing 325/542 atomic regions from SNP 97370 to 97970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,363 DEBUG Processing 3/526 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,453 DEBUG Processing 326/542 atomic regions from SNP 97670 to 98270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,545 DEBUG Processing 4/526 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,637 DEBUG Processing 327/542 atomic regions from SNP 97970 to 98570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,725 DEBUG Processing 5/526 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,821 DEBUG Processing 328/542 atomic regions from SNP 98270 to 98870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,901 DEBUG Processing 6/526 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,005 DEBUG Processing 329/542 atomic regions from SNP 98570 to 99170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,079 DEBUG Processing 7/526 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,190 DEBUG Processing 330/542 atomic regions from SNP 98870 to 99470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,259 DEBUG Processing 8/526 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,373 DEBUG Processing 331/542 atomic regions from SNP 99170 to 99770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,448 DEBUG Processing 9/526 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,561 DEBUG Processing 332/542 atomic regions from SNP 99470 to 100070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,652 DEBUG Processing 10/526 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,754 DEBUG Processing 333/542 atomic regions from SNP 99770 to 100370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,852 DEBUG Processing 11/526 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,941 DEBUG Processing 334/542 atomic regions from SNP 100070 to 100670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,057 DEBUG Processing 12/526 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,133 DEBUG Processing 335/542 atomic regions from SNP 100370 to 100970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,257 DEBUG Processing 13/526 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,318 DEBUG Processing 336/542 atomic regions from SNP 100670 to 101270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,456 DEBUG Processing 14/526 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,509 DEBUG Processing 337/542 atomic regions from SNP 100970 to 101570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,656 DEBUG Processing 15/526 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,691 DEBUG Processing 338/542 atomic regions from SNP 101270 to 101870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,838 DEBUG Processing 16/526 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,879 DEBUG Processing 339/542 atomic regions from SNP 101570 to 102170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,027 DEBUG Processing 17/526 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,055 DEBUG Processing 340/542 atomic regions from SNP 101870 to 102470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,214 DEBUG Processing 18/526 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,235 DEBUG Processing 341/542 atomic regions from SNP 102170 to 102770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,419 DEBUG Processing 342/542 atomic regions from SNP 102470 to 103070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,420 DEBUG Processing 19/526 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,599 DEBUG Processing 343/542 atomic regions from SNP 102770 to 103370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,606 DEBUG Processing 20/526 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,778 DEBUG Processing 344/542 atomic regions from SNP 103070 to 103670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,798 DEBUG Processing 21/526 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,957 DEBUG Processing 345/542 atomic regions from SNP 103370 to 103970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,976 DEBUG Processing 22/526 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,140 DEBUG Processing 346/542 atomic regions from SNP 103670 to 104270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,155 DEBUG Processing 23/526 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,329 DEBUG Processing 347/542 atomic regions from SNP 103970 to 104570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,335 DEBUG Processing 24/526 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,513 DEBUG Processing 348/542 atomic regions from SNP 104270 to 104870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,515 DEBUG Processing 25/526 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,693 DEBUG Processing 26/526 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,697 DEBUG Processing 349/542 atomic regions from SNP 104570 to 105170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,874 DEBUG Processing 27/526 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,882 DEBUG Processing 350/542 atomic regions from SNP 104870 to 105470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,050 DEBUG Processing 28/526 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,065 DEBUG Processing 351/542 atomic regions from SNP 105170 to 105770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,230 DEBUG Processing 29/526 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,249 DEBUG Processing 352/542 atomic regions from SNP 105470 to 106070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,404 DEBUG Processing 30/526 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,430 DEBUG Processing 353/542 atomic regions from SNP 105770 to 106370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,582 DEBUG Processing 31/526 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,610 DEBUG Processing 354/542 atomic regions from SNP 106070 to 106670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,759 DEBUG Processing 32/526 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,789 DEBUG Processing 355/542 atomic regions from SNP 106370 to 106970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,935 DEBUG Processing 33/526 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,965 DEBUG Processing 356/542 atomic regions from SNP 106670 to 107270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,111 DEBUG Processing 34/526 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,148 DEBUG Processing 357/542 atomic regions from SNP 106970 to 107570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,293 DEBUG Processing 35/526 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,336 DEBUG Processing 358/542 atomic regions from SNP 107270 to 107870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,474 DEBUG Processing 36/526 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,512 DEBUG Processing 359/542 atomic regions from SNP 107570 to 108170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,653 DEBUG Processing 37/526 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,702 DEBUG Processing 360/542 atomic regions from SNP 107870 to 108470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,864 DEBUG Processing 38/526 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,878 DEBUG Processing 361/542 atomic regions from SNP 108170 to 108770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,047 DEBUG Processing 39/526 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,055 DEBUG Processing 362/542 atomic regions from SNP 108470 to 109070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,224 DEBUG Processing 40/526 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,230 DEBUG Processing 363/542 atomic regions from SNP 108770 to 109370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,405 DEBUG Processing 41/526 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,408 DEBUG Processing 364/542 atomic regions from SNP 109070 to 109670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,588 DEBUG Processing 42/526 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,589 DEBUG Processing 365/542 atomic regions from SNP 109370 to 109970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,773 DEBUG Processing 43/526 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,778 DEBUG Processing 366/542 atomic regions from SNP 109670 to 110270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,999 DEBUG Processing 44/526 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,010 DEBUG Processing 367/542 atomic regions from SNP 109970 to 110570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,252 DEBUG Processing 45/526 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,278 DEBUG Processing 368/542 atomic regions from SNP 110270 to 110870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,513 DEBUG Processing 46/526 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,538 DEBUG Processing 369/542 atomic regions from SNP 110570 to 111170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,720 DEBUG Processing 47/526 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,731 DEBUG Processing 370/542 atomic regions from SNP 110870 to 111470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,922 DEBUG Processing 48/526 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,923 DEBUG Processing 371/542 atomic regions from SNP 111170 to 111770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,148 DEBUG Processing 372/542 atomic regions from SNP 111470 to 112070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,184 DEBUG Processing 49/526 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,535 DEBUG Processing 373/542 atomic regions from SNP 111770 to 112370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,556 DEBUG Processing 50/526 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,728 DEBUG Processing 374/542 atomic regions from SNP 112070 to 112670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,758 DEBUG Processing 51/526 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,922 DEBUG Processing 375/542 atomic regions from SNP 112370 to 112970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,968 DEBUG Processing 52/526 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,114 DEBUG Processing 376/542 atomic regions from SNP 112670 to 113270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,172 DEBUG Segmenting atomic regions: 2025-01-31 09:58:49,174 DEBUG Processing 53/526 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,217 DEBUG Processing 1/353 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,298 DEBUG Processing 377/542 atomic regions from SNP 112970 to 113570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,371 DEBUG Processing 54/526 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,410 DEBUG Processing 2/353 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,485 DEBUG Processing 378/542 atomic regions from SNP 113270 to 113870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,560 DEBUG Processing 55/526 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,595 DEBUG Processing 3/353 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,663 DEBUG Processing 379/542 atomic regions from SNP 113570 to 114170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,748 DEBUG Processing 56/526 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,787 DEBUG Processing 4/353 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,843 DEBUG Processing 380/542 atomic regions from SNP 113870 to 114470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,940 DEBUG Processing 57/526 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,977 DEBUG Processing 5/353 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,019 DEBUG Processing 381/542 atomic regions from SNP 114170 to 114770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,138 DEBUG Processing 58/526 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,175 DEBUG Processing 6/353 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,196 DEBUG Processing 382/542 atomic regions from SNP 114470 to 115070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,330 DEBUG Processing 59/526 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,372 DEBUG Processing 383/542 atomic regions from SNP 114770 to 115370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,376 DEBUG Processing 7/353 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,511 DEBUG Processing 60/526 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,553 DEBUG Processing 384/542 atomic regions from SNP 115070 to 115670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,570 DEBUG Processing 8/353 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,695 DEBUG Processing 61/526 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,734 DEBUG Processing 385/542 atomic regions from SNP 115370 to 115970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,760 DEBUG Processing 9/353 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,882 DEBUG Processing 62/526 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,912 DEBUG Processing 386/542 atomic regions from SNP 115670 to 116270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,956 DEBUG Processing 10/353 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,073 DEBUG Processing 63/526 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,092 DEBUG Processing 387/542 atomic regions from SNP 115970 to 116570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,138 DEBUG Processing 11/353 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,262 DEBUG Processing 64/526 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,274 DEBUG Processing 388/542 atomic regions from SNP 116270 to 116870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,333 DEBUG Processing 12/353 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,451 DEBUG Processing 65/526 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,462 DEBUG Processing 389/542 atomic regions from SNP 116570 to 117170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,537 DEBUG Processing 13/353 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,640 DEBUG Processing 390/542 atomic regions from SNP 116870 to 117470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,641 DEBUG Processing 66/526 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,724 DEBUG Processing 14/353 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,823 DEBUG Processing 391/542 atomic regions from SNP 117170 to 117770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,838 DEBUG Processing 67/526 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,933 DEBUG Processing 15/353 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,011 DEBUG Processing 392/542 atomic regions from SNP 117470 to 118070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,043 DEBUG Processing 68/526 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,149 DEBUG Processing 16/353 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,201 DEBUG Processing 393/542 atomic regions from SNP 117770 to 118370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,244 DEBUG Processing 69/526 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,365 DEBUG Processing 17/353 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,404 DEBUG Processing 394/542 atomic regions from SNP 118070 to 118670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,445 DEBUG Processing 70/526 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,590 DEBUG Processing 18/353 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,608 DEBUG Processing 395/542 atomic regions from SNP 118370 to 118970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,658 DEBUG Processing 71/526 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,791 DEBUG Processing 19/353 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,793 DEBUG Processing 396/542 atomic regions from SNP 118670 to 119270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,846 DEBUG Processing 72/526 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,994 DEBUG Processing 397/542 atomic regions from SNP 118970 to 119570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,001 DEBUG Processing 20/353 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,040 DEBUG Processing 73/526 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,202 DEBUG Processing 398/542 atomic regions from SNP 119270 to 119870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,211 DEBUG Processing 21/353 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,238 DEBUG Processing 74/526 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,483 DEBUG Processing 22/353 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,492 DEBUG Processing 399/542 atomic regions from SNP 119570 to 120170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,521 DEBUG Processing 75/526 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,674 DEBUG Processing 23/353 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,697 DEBUG Processing 400/542 atomic regions from SNP 119870 to 120470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,713 DEBUG Processing 76/526 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,869 DEBUG Processing 24/353 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,881 DEBUG Processing 401/542 atomic regions from SNP 120170 to 120770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,899 DEBUG Processing 77/526 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,072 DEBUG Processing 25/353 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,087 DEBUG Processing 402/542 atomic regions from SNP 120470 to 121070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,091 DEBUG Processing 78/526 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,273 DEBUG Processing 26/353 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,279 DEBUG Processing 79/526 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,289 DEBUG Processing 403/542 atomic regions from SNP 120770 to 121370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,473 DEBUG Processing 27/353 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,473 DEBUG Processing 80/526 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,486 DEBUG Processing 404/542 atomic regions from SNP 121070 to 121670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,668 DEBUG Processing 28/353 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,674 DEBUG Processing 81/526 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,675 DEBUG Processing 405/542 atomic regions from SNP 121370 to 121970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,847 DEBUG Processing 29/353 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,873 DEBUG Processing 406/542 atomic regions from SNP 121670 to 122270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,880 DEBUG Processing 82/526 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,022 DEBUG Processing 30/353 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,065 DEBUG Processing 407/542 atomic regions from SNP 121970 to 122570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,076 DEBUG Processing 83/526 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,195 DEBUG Processing 31/353 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,253 DEBUG Processing 408/542 atomic regions from SNP 122270 to 122870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,269 DEBUG Processing 84/526 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,365 DEBUG Processing 32/353 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,451 DEBUG Processing 409/542 atomic regions from SNP 122570 to 123170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,464 DEBUG Processing 85/526 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,541 DEBUG Processing 33/353 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,647 DEBUG Processing 410/542 atomic regions from SNP 122870 to 123470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,670 DEBUG Processing 86/526 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,754 DEBUG Processing 34/353 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,845 DEBUG Processing 411/542 atomic regions from SNP 123170 to 123770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,876 DEBUG Processing 87/526 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,973 DEBUG Processing 35/353 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,040 DEBUG Processing 412/542 atomic regions from SNP 123470 to 124070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,078 DEBUG Processing 88/526 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,186 DEBUG Processing 36/353 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,226 DEBUG Processing 413/542 atomic regions from SNP 123770 to 124370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,279 DEBUG Processing 89/526 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,365 DEBUG Processing 37/353 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,410 DEBUG Processing 414/542 atomic regions from SNP 124070 to 124670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,473 DEBUG Processing 90/526 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,543 DEBUG Processing 38/353 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,592 DEBUG Processing 415/542 atomic regions from SNP 124370 to 124970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,666 DEBUG Processing 91/526 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,715 DEBUG Processing 39/353 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,779 DEBUG Processing 416/542 atomic regions from SNP 124670 to 125270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,861 DEBUG Processing 92/526 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,921 DEBUG Processing 40/353 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,965 DEBUG Processing 417/542 atomic regions from SNP 124970 to 125570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,066 DEBUG Processing 93/526 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,129 DEBUG Processing 41/353 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,148 DEBUG Processing 418/542 atomic regions from SNP 125270 to 125870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,261 DEBUG Processing 94/526 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,330 DEBUG Processing 42/353 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,339 DEBUG Processing 419/542 atomic regions from SNP 125570 to 126170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,458 DEBUG Processing 95/526 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,529 DEBUG Processing 43/353 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,546 DEBUG Processing 420/542 atomic regions from SNP 125870 to 126470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,654 DEBUG Processing 96/526 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,730 DEBUG Processing 44/353 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,739 DEBUG Processing 421/542 atomic regions from SNP 126170 to 126770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,848 DEBUG Processing 97/526 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,922 DEBUG Processing 45/353 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,922 DEBUG Processing 422/542 atomic regions from SNP 126470 to 127070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,042 DEBUG Processing 98/526 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,108 DEBUG Processing 423/542 atomic regions from SNP 126770 to 127370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,119 DEBUG Processing 46/353 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,234 DEBUG Processing 99/526 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,297 DEBUG Processing 424/542 atomic regions from SNP 127070 to 127670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,300 DEBUG Processing 47/353 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,432 DEBUG Processing 100/526 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,477 DEBUG Processing 48/353 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,485 DEBUG Processing 425/542 atomic regions from SNP 127370 to 127970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,625 DEBUG Processing 101/526 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,653 DEBUG Processing 49/353 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,679 DEBUG Processing 426/542 atomic regions from SNP 127670 to 128270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,822 DEBUG Processing 102/526 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,829 DEBUG Processing 50/353 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,866 DEBUG Processing 427/542 atomic regions from SNP 127970 to 128570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,002 DEBUG Processing 51/353 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,023 DEBUG Processing 103/526 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,058 DEBUG Processing 428/542 atomic regions from SNP 128270 to 128870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,200 DEBUG Processing 52/353 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,225 DEBUG Processing 104/526 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,257 DEBUG Processing 429/542 atomic regions from SNP 128570 to 129170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,400 DEBUG Processing 53/353 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,437 DEBUG Processing 105/526 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,443 DEBUG Processing 430/542 atomic regions from SNP 128870 to 129470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,577 DEBUG Processing 54/353 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,630 DEBUG Processing 431/542 atomic regions from SNP 129170 to 129770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,641 DEBUG Processing 106/526 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,751 DEBUG Processing 55/353 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,817 DEBUG Processing 432/542 atomic regions from SNP 129470 to 130070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,850 DEBUG Processing 107/526 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,927 DEBUG Processing 56/353 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,005 DEBUG Processing 433/542 atomic regions from SNP 129770 to 130370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,059 DEBUG Processing 108/526 atomic regions from SNP 32207 to 32808 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,108 DEBUG Processing 57/353 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,193 DEBUG Processing 434/542 atomic regions from SNP 130070 to 130670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,261 DEBUG Processing 109/526 atomic regions from SNP 32508 to 33109 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,284 DEBUG Processing 58/353 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,378 DEBUG Processing 435/542 atomic regions from SNP 130370 to 130970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,460 DEBUG Processing 110/526 atomic regions from SNP 32809 to 33410 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,464 DEBUG Processing 59/353 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,571 DEBUG Processing 436/542 atomic regions from SNP 130670 to 131270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,644 DEBUG Processing 60/353 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,664 DEBUG Processing 111/526 atomic regions from SNP 33110 to 33711 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,758 DEBUG Processing 437/542 atomic regions from SNP 130970 to 131570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,812 DEBUG Processing 61/353 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,860 DEBUG Processing 112/526 atomic regions from SNP 33411 to 34012 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,943 DEBUG Processing 438/542 atomic regions from SNP 131270 to 131870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,987 DEBUG Processing 62/353 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,055 DEBUG Processing 113/526 atomic regions from SNP 33712 to 34313 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,129 DEBUG Processing 439/542 atomic regions from SNP 131570 to 132170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,160 DEBUG Processing 63/353 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,257 DEBUG Processing 114/526 atomic regions from SNP 34013 to 34614 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,321 DEBUG Processing 440/542 atomic regions from SNP 131870 to 132470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,343 DEBUG Processing 64/353 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,459 DEBUG Processing 115/526 atomic regions from SNP 34314 to 34915 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,513 DEBUG Processing 441/542 atomic regions from SNP 132170 to 132770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,532 DEBUG Processing 65/353 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,656 DEBUG Processing 116/526 atomic regions from SNP 34615 to 35216 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,707 DEBUG Processing 442/542 atomic regions from SNP 132470 to 133070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,724 DEBUG Processing 66/353 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,853 DEBUG Processing 117/526 atomic regions from SNP 34916 to 35517 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,903 DEBUG Processing 443/542 atomic regions from SNP 132770 to 133370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,907 DEBUG Processing 67/353 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,049 DEBUG Processing 118/526 atomic regions from SNP 35217 to 35818 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,086 DEBUG Processing 68/353 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,100 DEBUG Processing 444/542 atomic regions from SNP 133070 to 133670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,250 DEBUG Processing 119/526 atomic regions from SNP 35518 to 36119 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,267 DEBUG Processing 69/353 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,295 DEBUG Processing 445/542 atomic regions from SNP 133370 to 133970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,449 DEBUG Processing 70/353 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,452 DEBUG Processing 120/526 atomic regions from SNP 35819 to 36420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,490 DEBUG Processing 446/542 atomic regions from SNP 133670 to 134270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,627 DEBUG Processing 71/353 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,655 DEBUG Processing 121/526 atomic regions from SNP 36120 to 36721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,701 DEBUG Processing 447/542 atomic regions from SNP 133970 to 134570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,803 DEBUG Processing 72/353 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,851 DEBUG Processing 122/526 atomic regions from SNP 36421 to 37022 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,892 DEBUG Processing 448/542 atomic regions from SNP 134270 to 134870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,974 DEBUG Processing 73/353 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,055 DEBUG Processing 123/526 atomic regions from SNP 36722 to 37323 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,081 DEBUG Processing 449/542 atomic regions from SNP 134570 to 135170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,150 DEBUG Processing 74/353 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,269 DEBUG Processing 124/526 atomic regions from SNP 37023 to 37624 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,284 DEBUG Processing 450/542 atomic regions from SNP 134870 to 135470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,322 DEBUG Processing 75/353 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,478 DEBUG Processing 451/542 atomic regions from SNP 135170 to 135770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,485 DEBUG Processing 125/526 atomic regions from SNP 37324 to 37925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,503 DEBUG Processing 76/353 atomic regions from SNP 22575 to 23176 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,672 DEBUG Processing 452/542 atomic regions from SNP 135470 to 136070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,684 DEBUG Processing 77/353 atomic regions from SNP 22876 to 23477 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,701 DEBUG Processing 126/526 atomic regions from SNP 37625 to 38226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,862 DEBUG Processing 78/353 atomic regions from SNP 23177 to 23778 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,879 DEBUG Processing 453/542 atomic regions from SNP 135770 to 136370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,909 DEBUG Processing 127/526 atomic regions from SNP 37926 to 38527 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,044 DEBUG Processing 79/353 atomic regions from SNP 23478 to 24079 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,095 DEBUG Processing 454/542 atomic regions from SNP 136070 to 136670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,132 DEBUG Processing 128/526 atomic regions from SNP 38227 to 38828 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,225 DEBUG Processing 80/353 atomic regions from SNP 23779 to 24380 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,308 DEBUG Processing 455/542 atomic regions from SNP 136370 to 136970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,345 DEBUG Processing 129/526 atomic regions from SNP 38528 to 39129 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,394 DEBUG Processing 81/353 atomic regions from SNP 24080 to 24681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,502 DEBUG Processing 456/542 atomic regions from SNP 136670 to 137270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,549 DEBUG Processing 130/526 atomic regions from SNP 38829 to 39430 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,571 DEBUG Processing 82/353 atomic regions from SNP 24381 to 24982 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,710 DEBUG Processing 457/542 atomic regions from SNP 136970 to 137570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,753 DEBUG Processing 83/353 atomic regions from SNP 24682 to 25283 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,765 DEBUG Processing 131/526 atomic regions from SNP 39130 to 39731 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,002 DEBUG Processing 458/542 atomic regions from SNP 137270 to 137870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,071 DEBUG Processing 84/353 atomic regions from SNP 24983 to 25584 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,095 DEBUG Processing 132/526 atomic regions from SNP 39431 to 40032 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,193 DEBUG Processing 459/542 atomic regions from SNP 137570 to 138170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,243 DEBUG Processing 85/353 atomic regions from SNP 25284 to 25885 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,286 DEBUG Processing 133/526 atomic regions from SNP 39732 to 40333 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,381 DEBUG Processing 460/542 atomic regions from SNP 137870 to 138470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,416 DEBUG Processing 86/353 atomic regions from SNP 25585 to 26186 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,499 DEBUG Processing 134/526 atomic regions from SNP 40033 to 40634 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,570 DEBUG Processing 461/542 atomic regions from SNP 138170 to 138770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,586 DEBUG Processing 87/353 atomic regions from SNP 25886 to 26487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,697 DEBUG Processing 135/526 atomic regions from SNP 40334 to 40935 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,757 DEBUG Processing 462/542 atomic regions from SNP 138470 to 139070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,760 DEBUG Processing 88/353 atomic regions from SNP 26187 to 26788 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,892 DEBUG Processing 136/526 atomic regions from SNP 40635 to 41236 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,931 DEBUG Processing 89/353 atomic regions from SNP 26488 to 27089 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,945 DEBUG Processing 463/542 atomic regions from SNP 138770 to 139370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,090 DEBUG Processing 137/526 atomic regions from SNP 40936 to 41537 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,109 DEBUG Processing 90/353 atomic regions from SNP 26789 to 27390 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,138 DEBUG Processing 464/542 atomic regions from SNP 139070 to 139670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,286 DEBUG Processing 91/353 atomic regions from SNP 27090 to 27691 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,288 DEBUG Processing 138/526 atomic regions from SNP 41237 to 41838 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,326 DEBUG Processing 465/542 atomic regions from SNP 139370 to 139970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,464 DEBUG Processing 92/353 atomic regions from SNP 27391 to 27992 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,489 DEBUG Processing 139/526 atomic regions from SNP 41538 to 42139 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,513 DEBUG Processing 466/542 atomic regions from SNP 139670 to 140270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,640 DEBUG Processing 93/353 atomic regions from SNP 27692 to 28293 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,685 DEBUG Processing 140/526 atomic regions from SNP 41839 to 42440 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,701 DEBUG Processing 467/542 atomic regions from SNP 139970 to 140570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,811 DEBUG Processing 94/353 atomic regions from SNP 27993 to 28594 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,881 DEBUG Processing 141/526 atomic regions from SNP 42140 to 42741 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,885 DEBUG Processing 468/542 atomic regions from SNP 140270 to 140870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,980 DEBUG Processing 95/353 atomic regions from SNP 28294 to 28895 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,068 DEBUG Processing 469/542 atomic regions from SNP 140570 to 141170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,070 DEBUG Processing 142/526 atomic regions from SNP 42441 to 43042 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,153 DEBUG Processing 96/353 atomic regions from SNP 28595 to 29196 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,254 DEBUG Processing 470/542 atomic regions from SNP 140870 to 141470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,274 DEBUG Processing 143/526 atomic regions from SNP 42742 to 43343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,332 DEBUG Processing 97/353 atomic regions from SNP 28896 to 29497 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,443 DEBUG Processing 471/542 atomic regions from SNP 141170 to 141770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,484 DEBUG Processing 144/526 atomic regions from SNP 43043 to 43644 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,520 DEBUG Processing 98/353 atomic regions from SNP 29197 to 29798 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,632 DEBUG Processing 472/542 atomic regions from SNP 141470 to 142070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,680 DEBUG Processing 145/526 atomic regions from SNP 43344 to 43945 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,698 DEBUG Processing 99/353 atomic regions from SNP 29498 to 30099 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,832 DEBUG Processing 473/542 atomic regions from SNP 141770 to 142370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,872 DEBUG Processing 146/526 atomic regions from SNP 43645 to 44246 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,873 DEBUG Processing 100/353 atomic regions from SNP 29799 to 30400 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,022 DEBUG Processing 474/542 atomic regions from SNP 142070 to 142670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,043 DEBUG Processing 101/353 atomic regions from SNP 30100 to 30701 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,064 DEBUG Processing 147/526 atomic regions from SNP 43946 to 44547 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,216 DEBUG Processing 102/353 atomic regions from SNP 30401 to 31002 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,224 DEBUG Processing 475/542 atomic regions from SNP 142370 to 142970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,262 DEBUG Processing 148/526 atomic regions from SNP 44247 to 44848 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,380 DEBUG Processing 103/353 atomic regions from SNP 30702 to 31303 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,428 DEBUG Processing 476/542 atomic regions from SNP 142670 to 143270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,447 DEBUG Processing 149/526 atomic regions from SNP 44548 to 45149 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,550 DEBUG Processing 104/353 atomic regions from SNP 31003 to 31604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,636 DEBUG Processing 150/526 atomic regions from SNP 44849 to 45450 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,643 DEBUG Processing 477/542 atomic regions from SNP 142970 to 143570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,720 DEBUG Processing 105/353 atomic regions from SNP 31304 to 31905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,823 DEBUG Processing 151/526 atomic regions from SNP 45150 to 45751 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,853 DEBUG Processing 478/542 atomic regions from SNP 143270 to 143870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,890 DEBUG Processing 106/353 atomic regions from SNP 31605 to 32206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,010 DEBUG Processing 152/526 atomic regions from SNP 45451 to 46052 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,056 DEBUG Processing 107/353 atomic regions from SNP 31906 to 32507 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,064 DEBUG Processing 479/542 atomic regions from SNP 143570 to 144170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,194 DEBUG Processing 153/526 atomic regions from SNP 45752 to 46353 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,220 DEBUG Processing 108/353 atomic regions from SNP 32207 to 32808 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,255 DEBUG Processing 480/542 atomic regions from SNP 143870 to 144470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,393 DEBUG Processing 154/526 atomic regions from SNP 46053 to 46654 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,399 DEBUG Processing 109/353 atomic regions from SNP 32508 to 33109 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,448 DEBUG Processing 481/542 atomic regions from SNP 144170 to 144770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,579 DEBUG Processing 110/353 atomic regions from SNP 32809 to 33410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,597 DEBUG Processing 155/526 atomic regions from SNP 46354 to 46955 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,649 DEBUG Processing 482/542 atomic regions from SNP 144470 to 145070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,755 DEBUG Processing 111/353 atomic regions from SNP 33110 to 33711 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,793 DEBUG Processing 156/526 atomic regions from SNP 46655 to 47256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,869 DEBUG Processing 483/542 atomic regions from SNP 144770 to 145370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,930 DEBUG Processing 112/353 atomic regions from SNP 33411 to 34012 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,993 DEBUG Processing 157/526 atomic regions from SNP 46956 to 47557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,095 DEBUG Processing 484/542 atomic regions from SNP 145070 to 145670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,108 DEBUG Processing 113/353 atomic regions from SNP 33712 to 34313 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,193 DEBUG Processing 158/526 atomic regions from SNP 47257 to 47858 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,287 DEBUG Processing 114/353 atomic regions from SNP 34013 to 34614 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,299 DEBUG Processing 485/542 atomic regions from SNP 145370 to 145970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,393 DEBUG Processing 159/526 atomic regions from SNP 47558 to 48159 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,459 DEBUG Processing 115/353 atomic regions from SNP 34314 to 34915 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,490 DEBUG Processing 486/542 atomic regions from SNP 145670 to 146270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,583 DEBUG Processing 160/526 atomic regions from SNP 47859 to 48460 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,631 DEBUG Processing 116/353 atomic regions from SNP 34615 to 35216 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,686 DEBUG Processing 487/542 atomic regions from SNP 145970 to 146570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,782 DEBUG Processing 161/526 atomic regions from SNP 48160 to 48761 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,811 DEBUG Processing 117/353 atomic regions from SNP 34916 to 35517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,905 DEBUG Processing 488/542 atomic regions from SNP 146270 to 146870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,982 DEBUG Processing 162/526 atomic regions from SNP 48461 to 49062 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,991 DEBUG Processing 118/353 atomic regions from SNP 35217 to 35818 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,105 DEBUG Processing 489/542 atomic regions from SNP 146570 to 147170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,177 DEBUG Processing 119/353 atomic regions from SNP 35518 to 36119 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,178 DEBUG Processing 163/526 atomic regions from SNP 48762 to 49363 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,310 DEBUG Processing 490/542 atomic regions from SNP 146870 to 147470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,383 DEBUG Processing 164/526 atomic regions from SNP 49063 to 49664 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,383 DEBUG Processing 120/353 atomic regions from SNP 35819 to 36420 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,528 DEBUG Processing 491/542 atomic regions from SNP 147170 to 147770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,578 DEBUG Processing 121/353 atomic regions from SNP 36120 to 36721 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,603 DEBUG Processing 165/526 atomic regions from SNP 49364 to 49965 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,784 DEBUG Processing 122/353 atomic regions from SNP 36421 to 37022 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,784 DEBUG Processing 492/542 atomic regions from SNP 147470 to 148070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,827 DEBUG Processing 166/526 atomic regions from SNP 49665 to 50266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,150 DEBUG Processing 123/353 atomic regions from SNP 36722 to 37323 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,170 DEBUG Processing 493/542 atomic regions from SNP 147770 to 148370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,198 DEBUG Processing 167/526 atomic regions from SNP 49966 to 50567 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,342 DEBUG Processing 124/353 atomic regions from SNP 37023 to 37624 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,402 DEBUG Processing 494/542 atomic regions from SNP 148070 to 148670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,421 DEBUG Processing 168/526 atomic regions from SNP 50267 to 50868 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,527 DEBUG Processing 125/353 atomic regions from SNP 37324 to 37925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,619 DEBUG Processing 495/542 atomic regions from SNP 148370 to 148970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,637 DEBUG Processing 169/526 atomic regions from SNP 50568 to 51169 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,722 DEBUG Processing 126/353 atomic regions from SNP 37625 to 38226 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,868 DEBUG Processing 496/542 atomic regions from SNP 148670 to 149270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,887 DEBUG Processing 170/526 atomic regions from SNP 50869 to 51470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,070 DEBUG Processing 127/353 atomic regions from SNP 37926 to 38527 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,150 DEBUG Processing 497/542 atomic regions from SNP 148970 to 149570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,166 DEBUG Processing 171/526 atomic regions from SNP 51170 to 51771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,267 DEBUG Processing 128/353 atomic regions from SNP 38227 to 38828 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,376 DEBUG Processing 498/542 atomic regions from SNP 149270 to 149870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,403 DEBUG Processing 172/526 atomic regions from SNP 51471 to 52072 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,478 DEBUG Processing 129/353 atomic regions from SNP 38528 to 39129 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,627 DEBUG Processing 499/542 atomic regions from SNP 149570 to 150170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,649 DEBUG Processing 173/526 atomic regions from SNP 51772 to 52373 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,707 DEBUG Processing 130/353 atomic regions from SNP 38829 to 39430 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,086 DEBUG Processing 500/542 atomic regions from SNP 149870 to 150470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,088 DEBUG Processing 131/353 atomic regions from SNP 39130 to 39731 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,104 DEBUG Processing 174/526 atomic regions from SNP 52073 to 52674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,318 DEBUG Processing 132/353 atomic regions from SNP 39431 to 40032 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,340 DEBUG Processing 501/542 atomic regions from SNP 150170 to 150770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,381 DEBUG Processing 175/526 atomic regions from SNP 52374 to 52975 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,570 DEBUG Processing 133/353 atomic regions from SNP 39732 to 40333 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,661 DEBUG Processing 502/542 atomic regions from SNP 150470 to 151070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,729 DEBUG Processing 176/526 atomic regions from SNP 52675 to 53276 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,874 DEBUG Processing 134/353 atomic regions from SNP 40033 to 40634 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,961 DEBUG Processing 503/542 atomic regions from SNP 150770 to 151370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,015 DEBUG Processing 177/526 atomic regions from SNP 52976 to 53577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,086 DEBUG Processing 135/353 atomic regions from SNP 40334 to 40935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,233 DEBUG Processing 504/542 atomic regions from SNP 151070 to 151670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,261 DEBUG Processing 178/526 atomic regions from SNP 53277 to 53878 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,324 DEBUG Processing 136/353 atomic regions from SNP 40635 to 41236 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,573 DEBUG Processing 505/542 atomic regions from SNP 151370 to 151970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,603 DEBUG Processing 179/526 atomic regions from SNP 53578 to 54179 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,624 DEBUG Processing 137/353 atomic regions from SNP 40936 to 41537 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,759 DEBUG Processing 506/542 atomic regions from SNP 151670 to 152270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,791 DEBUG Processing 180/526 atomic regions from SNP 53879 to 54480 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,797 DEBUG Processing 138/353 atomic regions from SNP 41237 to 41838 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,993 DEBUG Processing 507/542 atomic regions from SNP 151970 to 152570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,029 DEBUG Processing 139/353 atomic regions from SNP 41538 to 42139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,040 DEBUG Processing 181/526 atomic regions from SNP 54180 to 54781 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,295 DEBUG Processing 508/542 atomic regions from SNP 152270 to 152870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,332 DEBUG Processing 140/353 atomic regions from SNP 41839 to 42440 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,348 DEBUG Processing 182/526 atomic regions from SNP 54481 to 55082 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,564 DEBUG Processing 509/542 atomic regions from SNP 152570 to 153170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,578 DEBUG Processing 141/353 atomic regions from SNP 42140 to 42741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,605 DEBUG Processing 183/526 atomic regions from SNP 54782 to 55383 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,762 DEBUG Processing 142/353 atomic regions from SNP 42441 to 43042 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,764 DEBUG Processing 510/542 atomic regions from SNP 152870 to 153470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,858 DEBUG Processing 184/526 atomic regions from SNP 55083 to 55684 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,009 DEBUG Processing 143/353 atomic regions from SNP 42742 to 43343 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,037 DEBUG Processing 511/542 atomic regions from SNP 153170 to 153770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,094 DEBUG Processing 185/526 atomic regions from SNP 55384 to 55985 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,175 DEBUG Processing 144/353 atomic regions from SNP 43043 to 43644 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,222 DEBUG Processing 512/542 atomic regions from SNP 153470 to 154070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,311 DEBUG Processing 186/526 atomic regions from SNP 55685 to 56286 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,392 DEBUG Processing 145/353 atomic regions from SNP 43344 to 43945 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,491 DEBUG Processing 513/542 atomic regions from SNP 153770 to 154370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,631 DEBUG Processing 187/526 atomic regions from SNP 55986 to 56587 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,674 DEBUG Processing 146/353 atomic regions from SNP 43645 to 44246 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,783 DEBUG Processing 514/542 atomic regions from SNP 154070 to 154670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,850 DEBUG Processing 147/353 atomic regions from SNP 43946 to 44547 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,878 DEBUG Processing 188/526 atomic regions from SNP 56287 to 56888 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,001 DEBUG Processing 515/542 atomic regions from SNP 154370 to 154970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,106 DEBUG Processing 148/353 atomic regions from SNP 44247 to 44848 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,202 DEBUG Processing 189/526 atomic regions from SNP 56588 to 57189 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,236 DEBUG Processing 516/542 atomic regions from SNP 154670 to 155270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,297 DEBUG Processing 149/353 atomic regions from SNP 44548 to 45149 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,437 DEBUG Processing 190/526 atomic regions from SNP 56889 to 57490 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,443 DEBUG Processing 517/542 atomic regions from SNP 154970 to 155570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,514 DEBUG Processing 150/353 atomic regions from SNP 44849 to 45450 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,729 DEBUG Processing 518/542 atomic regions from SNP 155270 to 155870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,754 DEBUG Processing 191/526 atomic regions from SNP 57190 to 57791 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,763 DEBUG Processing 151/353 atomic regions from SNP 45150 to 45751 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,914 DEBUG Processing 519/542 atomic regions from SNP 155570 to 156170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,937 DEBUG Processing 152/353 atomic regions from SNP 45451 to 46052 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,958 DEBUG Processing 192/526 atomic regions from SNP 57491 to 58092 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,093 DEBUG Processing 520/542 atomic regions from SNP 155870 to 156470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,096 DEBUG Processing 153/353 atomic regions from SNP 45752 to 46353 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,150 DEBUG Processing 193/526 atomic regions from SNP 57792 to 58393 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,260 DEBUG Processing 154/353 atomic regions from SNP 46053 to 46654 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,271 DEBUG Processing 521/542 atomic regions from SNP 156170 to 156770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,349 DEBUG Processing 194/526 atomic regions from SNP 58093 to 58694 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,440 DEBUG Processing 155/353 atomic regions from SNP 46354 to 46955 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,449 DEBUG Processing 522/542 atomic regions from SNP 156470 to 157070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,569 DEBUG Processing 195/526 atomic regions from SNP 58394 to 58995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,627 DEBUG Processing 156/353 atomic regions from SNP 46655 to 47256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,652 DEBUG Processing 523/542 atomic regions from SNP 156770 to 157370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,857 DEBUG Processing 196/526 atomic regions from SNP 58695 to 59296 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,915 DEBUG Processing 157/353 atomic regions from SNP 46956 to 47557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,970 DEBUG Processing 524/542 atomic regions from SNP 157070 to 157670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,183 DEBUG Processing 197/526 atomic regions from SNP 58996 to 59597 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,214 DEBUG Processing 158/353 atomic regions from SNP 47257 to 47858 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,285 DEBUG Processing 525/542 atomic regions from SNP 157370 to 157970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,512 DEBUG Processing 159/353 atomic regions from SNP 47558 to 48159 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,518 DEBUG Processing 198/526 atomic regions from SNP 59297 to 59898 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,574 DEBUG Processing 526/542 atomic regions from SNP 157670 to 158270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,692 DEBUG Processing 160/353 atomic regions from SNP 47859 to 48460 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,739 DEBUG Processing 199/526 atomic regions from SNP 59598 to 60199 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,762 DEBUG Processing 527/542 atomic regions from SNP 157970 to 158570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,861 DEBUG Processing 161/353 atomic regions from SNP 48160 to 48761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,977 DEBUG Processing 200/526 atomic regions from SNP 59899 to 60500 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,980 DEBUG Processing 528/542 atomic regions from SNP 158270 to 158870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,100 DEBUG Processing 162/353 atomic regions from SNP 48461 to 49062 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,204 DEBUG Processing 529/542 atomic regions from SNP 158570 to 159170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,217 DEBUG Processing 201/526 atomic regions from SNP 60200 to 60801 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,266 DEBUG Processing 163/353 atomic regions from SNP 48762 to 49363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,461 DEBUG Processing 530/542 atomic regions from SNP 158870 to 159470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,514 DEBUG Processing 164/353 atomic regions from SNP 49063 to 49664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,518 DEBUG Processing 202/526 atomic regions from SNP 60501 to 61102 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,646 DEBUG Processing 531/542 atomic regions from SNP 159170 to 159770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,719 DEBUG Processing 165/353 atomic regions from SNP 49364 to 49965 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,757 DEBUG Processing 203/526 atomic regions from SNP 60802 to 61403 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,919 DEBUG Processing 532/542 atomic regions from SNP 159470 to 160070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,996 DEBUG Processing 166/353 atomic regions from SNP 49665 to 50266 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,051 DEBUG Processing 204/526 atomic regions from SNP 61103 to 61704 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,251 DEBUG Processing 533/542 atomic regions from SNP 159770 to 160370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,303 DEBUG Processing 167/353 atomic regions from SNP 49966 to 50567 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,381 DEBUG Processing 205/526 atomic regions from SNP 61404 to 62005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,581 DEBUG Processing 168/353 atomic regions from SNP 50267 to 50868 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,587 DEBUG Processing 534/542 atomic regions from SNP 160070 to 160670 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,687 DEBUG Processing 206/526 atomic regions from SNP 61705 to 62306 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,802 DEBUG Processing 169/353 atomic regions from SNP 50568 to 51169 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,818 DEBUG Processing 535/542 atomic regions from SNP 160370 to 160970 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,874 DEBUG Processing 207/526 atomic regions from SNP 62006 to 62607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,969 DEBUG Processing 170/353 atomic regions from SNP 50869 to 51470 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,014 DEBUG Processing 536/542 atomic regions from SNP 160670 to 161270 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,067 DEBUG Processing 208/526 atomic regions from SNP 62307 to 62908 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,160 DEBUG Processing 171/353 atomic regions from SNP 51170 to 51771 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,217 DEBUG Processing 537/542 atomic regions from SNP 160970 to 161570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,274 DEBUG Processing 209/526 atomic regions from SNP 62608 to 63209 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,318 DEBUG Processing 172/353 atomic regions from SNP 51471 to 52072 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,402 DEBUG Processing 538/542 atomic regions from SNP 161270 to 161870 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,478 DEBUG Processing 173/353 atomic regions from SNP 51772 to 52373 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,483 DEBUG Processing 210/526 atomic regions from SNP 62909 to 63510 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,584 DEBUG Processing 539/542 atomic regions from SNP 161570 to 162170 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,646 DEBUG Processing 174/353 atomic regions from SNP 52073 to 52674 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,700 DEBUG Processing 211/526 atomic regions from SNP 63210 to 63811 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,766 DEBUG Processing 540/542 atomic regions from SNP 161870 to 162470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,806 DEBUG Processing 175/353 atomic regions from SNP 52374 to 52975 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,907 DEBUG Processing 212/526 atomic regions from SNP 63511 to 64112 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,947 DEBUG Processing 541/542 atomic regions from SNP 162170 to 162770 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,977 DEBUG Processing 176/353 atomic regions from SNP 52675 to 53276 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,105 DEBUG Processing 213/526 atomic regions from SNP 63812 to 64413 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,123 DEBUG Processing 542/542 atomic regions from SNP 162470 to 163070 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,156 DEBUG Processing 177/353 atomic regions from SNP 52976 to 53577 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,236 DEBUG Unique SNPs positions in subchromosome 1: 163071 2025-01-31 09:59:24,295 DEBUG Processing 214/526 atomic regions from SNP 64113 to 64714 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,334 DEBUG Processing 178/353 atomic regions from SNP 53277 to 53878 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,481 DEBUG Processing 215/526 atomic regions from SNP 64414 to 65015 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,496 DEBUG Processing 179/353 atomic regions from SNP 53578 to 54179 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,655 DEBUG Processing 180/353 atomic regions from SNP 53879 to 54480 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,667 DEBUG Processing 216/526 atomic regions from SNP 64715 to 65316 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,813 DEBUG Processing 181/353 atomic regions from SNP 54180 to 54781 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,849 DEBUG Processing 217/526 atomic regions from SNP 65016 to 65617 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,969 DEBUG Processing 182/353 atomic regions from SNP 54481 to 55082 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,031 DEBUG Processing 218/526 atomic regions from SNP 65317 to 65918 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,126 DEBUG Processing 183/353 atomic regions from SNP 54782 to 55383 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,211 DEBUG Processing 219/526 atomic regions from SNP 65618 to 66219 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,279 DEBUG Processing 184/353 atomic regions from SNP 55083 to 55684 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,401 DEBUG Processing 220/526 atomic regions from SNP 65919 to 66520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,444 DEBUG Processing 185/353 atomic regions from SNP 55384 to 55985 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,588 DEBUG Processing 221/526 atomic regions from SNP 66220 to 66821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,606 DEBUG Processing 186/353 atomic regions from SNP 55685 to 56286 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,776 DEBUG Processing 222/526 atomic regions from SNP 66521 to 67121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,789 DEBUG Processing 187/353 atomic regions from SNP 55986 to 56587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,949 DEBUG Processing 188/353 atomic regions from SNP 56287 to 56888 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,956 DEBUG Processing 223/526 atomic regions from SNP 66821 to 67421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,110 DEBUG Processing 189/353 atomic regions from SNP 56588 to 57189 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,137 DEBUG Processing 224/526 atomic regions from SNP 67121 to 67721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,271 DEBUG Processing 190/353 atomic regions from SNP 56889 to 57490 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,318 DEBUG Processing 225/526 atomic regions from SNP 67421 to 68021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,439 DEBUG Processing 191/353 atomic regions from SNP 57190 to 57791 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,504 DEBUG Processing 226/526 atomic regions from SNP 67721 to 68321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,597 DEBUG Processing 192/353 atomic regions from SNP 57491 to 58092 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,680 DEBUG Processing 227/526 atomic regions from SNP 68021 to 68621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,756 DEBUG Processing 193/353 atomic regions from SNP 57792 to 58393 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,863 DEBUG Processing 228/526 atomic regions from SNP 68321 to 68921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,915 DEBUG Processing 194/353 atomic regions from SNP 58093 to 58694 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,043 DEBUG Processing 229/526 atomic regions from SNP 68621 to 69221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,071 DEBUG Processing 195/353 atomic regions from SNP 58394 to 58995 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,220 DEBUG Processing 230/526 atomic regions from SNP 68921 to 69521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,229 DEBUG Processing 196/353 atomic regions from SNP 58695 to 59296 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,389 DEBUG Processing 197/353 atomic regions from SNP 58996 to 59597 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,398 DEBUG Processing 231/526 atomic regions from SNP 69221 to 69821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,546 DEBUG Processing 198/353 atomic regions from SNP 59297 to 59898 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,576 DEBUG Processing 232/526 atomic regions from SNP 69521 to 70121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,704 DEBUG Processing 199/353 atomic regions from SNP 59598 to 60199 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,754 DEBUG Processing 233/526 atomic regions from SNP 69821 to 70421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,868 DEBUG Processing 200/353 atomic regions from SNP 59899 to 60500 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,933 DEBUG Processing 234/526 atomic regions from SNP 70121 to 70721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,034 DEBUG Processing 201/353 atomic regions from SNP 60200 to 60801 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,112 DEBUG Processing 235/526 atomic regions from SNP 70421 to 71021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,198 DEBUG Processing 202/353 atomic regions from SNP 60501 to 61102 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,254 DEBUG Subchromosome time: 137.88971814501565, subchromosome SNPs: 163071 2025-01-31 09:59:28,254 DEBUG Estimated BADs: [3.53, 1.18, 1.77, 7.06, 3.53, 1.18, 3.53, 7.06, 3.53, 1.18, 10.59, 1.18, 3.53, 1.18, 3.53, 1.18] SNP counts: [21458, 7535, 4540, 22889, 3842, 6291, 6410, 4708, 11800, 2604, 3285, 6003, 27303, 2430, 22161, 9812] SNP IDs counts: [21458, 7535, 4540, 22889, 3842, 6291, 6410, 4708, 11800, 2604, 3285, 6003, 27303, 2430, 22161, 9812] Critical gap: 522449bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 15.98Mbp, 20.51Mbp, 23.53Mbp, 35.81Mbp, 38.08Mbp, 41.96Mbp, 45.43Mbp, 47.88Mbp, 54.37Mbp, 55.93Mbp, 57.71Mbp, 61.15Mbp, 76.01Mbp, 77.38Mbp, 89.29Mbp, 94.99Mbp] 2025-01-31 09:59:28,254 DEBUG chr17 time: 137.89015397697221 s 2025-01-31 09:59:28,301 DEBUG Processing 236/526 atomic regions from SNP 70721 to 71321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,339 DEBUG chr17: Fitting background model for 16 segments 2025-01-31 09:59:28,362 DEBUG Processing 203/353 atomic regions from SNP 60802 to 61403 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,491 DEBUG Processing 237/526 atomic regions from SNP 71021 to 71621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,532 DEBUG Processing 204/353 atomic regions from SNP 61103 to 61704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,667 DEBUG Processing 238/526 atomic regions from SNP 71321 to 71921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,693 DEBUG Processing 205/353 atomic regions from SNP 61404 to 62005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,839 DEBUG Processing 239/526 atomic regions from SNP 71621 to 72221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,869 DEBUG Processing 206/353 atomic regions from SNP 61705 to 62306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,012 DEBUG Processing 240/526 atomic regions from SNP 71921 to 72521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,037 DEBUG Processing 207/353 atomic regions from SNP 62006 to 62607 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,185 DEBUG Processing 241/526 atomic regions from SNP 72221 to 72821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,200 DEBUG Processing 208/353 atomic regions from SNP 62307 to 62908 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,365 DEBUG Processing 242/526 atomic regions from SNP 72521 to 73121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,365 DEBUG Processing 209/353 atomic regions from SNP 62608 to 63209 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,523 DEBUG Processing 210/353 atomic regions from SNP 62909 to 63510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,541 DEBUG Processing 243/526 atomic regions from SNP 72821 to 73421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,680 DEBUG Processing 211/353 atomic regions from SNP 63210 to 63811 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,714 DEBUG Processing 244/526 atomic regions from SNP 73121 to 73721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,834 DEBUG Processing 212/353 atomic regions from SNP 63511 to 64112 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,887 DEBUG Processing 245/526 atomic regions from SNP 73421 to 74021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,986 DEBUG Processing 213/353 atomic regions from SNP 63812 to 64413 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,058 DEBUG Processing 246/526 atomic regions from SNP 73721 to 74321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,139 DEBUG Processing 214/353 atomic regions from SNP 64113 to 64714 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,232 DEBUG Processing 247/526 atomic regions from SNP 74021 to 74621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,295 DEBUG Processing 215/353 atomic regions from SNP 64414 to 65015 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,407 DEBUG Processing 248/526 atomic regions from SNP 74321 to 74921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,451 DEBUG Processing 216/353 atomic regions from SNP 64715 to 65316 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,580 DEBUG Processing 249/526 atomic regions from SNP 74621 to 75221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,605 DEBUG Processing 217/353 atomic regions from SNP 65016 to 65617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,757 DEBUG Processing 250/526 atomic regions from SNP 74921 to 75521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,760 DEBUG Processing 218/353 atomic regions from SNP 65317 to 65918 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,917 DEBUG Processing 219/353 atomic regions from SNP 65618 to 66219 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,932 DEBUG Processing 251/526 atomic regions from SNP 75221 to 75821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,073 DEBUG Processing 220/353 atomic regions from SNP 65919 to 66520 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,107 DEBUG Processing 252/526 atomic regions from SNP 75521 to 76121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,230 DEBUG Processing 221/353 atomic regions from SNP 66220 to 66821 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,283 DEBUG Processing 253/526 atomic regions from SNP 75821 to 76421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,385 DEBUG Processing 222/353 atomic regions from SNP 66521 to 67122 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,456 DEBUG Processing 254/526 atomic regions from SNP 76121 to 76721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,539 DEBUG Processing 223/353 atomic regions from SNP 66822 to 67423 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,631 DEBUG Processing 255/526 atomic regions from SNP 76421 to 77021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,701 DEBUG Processing 224/353 atomic regions from SNP 67123 to 67724 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,810 DEBUG Processing 256/526 atomic regions from SNP 76721 to 77321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,874 DEBUG Processing 225/353 atomic regions from SNP 67424 to 68025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,984 DEBUG Processing 257/526 atomic regions from SNP 77021 to 77621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,049 DEBUG Processing 226/353 atomic regions from SNP 67725 to 68326 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,162 DEBUG Processing 258/526 atomic regions from SNP 77321 to 77921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,220 DEBUG Processing 227/353 atomic regions from SNP 68026 to 68627 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,341 DEBUG Processing 259/526 atomic regions from SNP 77621 to 78221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,384 DEBUG Processing 228/353 atomic regions from SNP 68327 to 68928 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,539 DEBUG Processing 260/526 atomic regions from SNP 77921 to 78521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,552 DEBUG Processing 229/353 atomic regions from SNP 68628 to 69229 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,722 DEBUG Processing 230/353 atomic regions from SNP 68929 to 69530 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,742 DEBUG Processing 261/526 atomic regions from SNP 78221 to 78821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,885 DEBUG Processing 231/353 atomic regions from SNP 69230 to 69831 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,929 DEBUG Processing 262/526 atomic regions from SNP 78521 to 79121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,059 DEBUG Processing 232/353 atomic regions from SNP 69531 to 70132 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,112 DEBUG Processing 263/526 atomic regions from SNP 78821 to 79421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,246 DEBUG Processing 233/353 atomic regions from SNP 69832 to 70433 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,304 DEBUG Processing 264/526 atomic regions from SNP 79121 to 79721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,439 DEBUG Processing 234/353 atomic regions from SNP 70133 to 70734 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,488 DEBUG Processing 265/526 atomic regions from SNP 79421 to 80021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,631 DEBUG Processing 235/353 atomic regions from SNP 70434 to 71035 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,682 DEBUG Processing 266/526 atomic regions from SNP 79721 to 80321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,812 DEBUG Processing 236/353 atomic regions from SNP 70735 to 71336 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,863 DEBUG Processing 267/526 atomic regions from SNP 80021 to 80621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,979 DEBUG Processing 237/353 atomic regions from SNP 71036 to 71637 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,037 DEBUG Processing 268/526 atomic regions from SNP 80321 to 80921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,145 DEBUG Processing 238/353 atomic regions from SNP 71337 to 71938 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,211 DEBUG Processing 269/526 atomic regions from SNP 80621 to 81221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,317 DEBUG Processing 239/353 atomic regions from SNP 71638 to 72239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,385 DEBUG Processing 270/526 atomic regions from SNP 80921 to 81521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,483 DEBUG Processing 240/353 atomic regions from SNP 71939 to 72540 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,561 DEBUG Processing 271/526 atomic regions from SNP 81221 to 81821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,642 DEBUG Processing 241/353 atomic regions from SNP 72240 to 72841 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,743 DEBUG Processing 272/526 atomic regions from SNP 81521 to 82121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,801 DEBUG Processing 242/353 atomic regions from SNP 72541 to 73141 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,917 DEBUG Processing 273/526 atomic regions from SNP 81821 to 82421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,960 DEBUG Processing 243/353 atomic regions from SNP 72841 to 73441 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,095 DEBUG Processing 274/526 atomic regions from SNP 82121 to 82721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,143 DEBUG Processing 244/353 atomic regions from SNP 73141 to 73741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,274 DEBUG Processing 275/526 atomic regions from SNP 82421 to 83021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,329 DEBUG Processing 245/353 atomic regions from SNP 73441 to 74041 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,456 DEBUG Processing 276/526 atomic regions from SNP 82721 to 83321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,501 DEBUG Processing 246/353 atomic regions from SNP 73741 to 74341 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,632 DEBUG Processing 277/526 atomic regions from SNP 83021 to 83621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,663 DEBUG Processing 247/353 atomic regions from SNP 74041 to 74641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,808 DEBUG Processing 278/526 atomic regions from SNP 83321 to 83921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,832 DEBUG Processing 248/353 atomic regions from SNP 74341 to 74941 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,981 DEBUG Processing 279/526 atomic regions from SNP 83621 to 84221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,021 DEBUG Processing 249/353 atomic regions from SNP 74641 to 75241 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,172 DEBUG Processing 280/526 atomic regions from SNP 83921 to 84521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,209 DEBUG Processing 250/353 atomic regions from SNP 74941 to 75541 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,381 DEBUG Processing 281/526 atomic regions from SNP 84221 to 84821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,393 DEBUG Processing 251/353 atomic regions from SNP 75241 to 75841 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,567 DEBUG Processing 252/353 atomic regions from SNP 75541 to 76141 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,576 DEBUG Processing 282/526 atomic regions from SNP 84521 to 85121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,752 DEBUG Processing 253/353 atomic regions from SNP 75841 to 76441 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,768 DEBUG Processing 283/526 atomic regions from SNP 84821 to 85421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,940 DEBUG Processing 254/353 atomic regions from SNP 76141 to 76741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,947 DEBUG Processing 284/526 atomic regions from SNP 85121 to 85721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,116 DEBUG Processing 255/353 atomic regions from SNP 76441 to 77041 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,124 DEBUG Processing 285/526 atomic regions from SNP 85421 to 86021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,281 DEBUG Processing 256/353 atomic regions from SNP 76741 to 77341 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,302 DEBUG Processing 286/526 atomic regions from SNP 85721 to 86321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,462 DEBUG Processing 257/353 atomic regions from SNP 77041 to 77641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,481 DEBUG Processing 287/526 atomic regions from SNP 86021 to 86621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,649 DEBUG Processing 258/353 atomic regions from SNP 77341 to 77941 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,656 DEBUG Processing 288/526 atomic regions from SNP 86321 to 86921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,818 DEBUG Processing 259/353 atomic regions from SNP 77641 to 78241 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,830 DEBUG Processing 289/526 atomic regions from SNP 86621 to 87221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,001 DEBUG Processing 260/353 atomic regions from SNP 77941 to 78541 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,009 DEBUG Processing 290/526 atomic regions from SNP 86921 to 87521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,178 DEBUG Processing 261/353 atomic regions from SNP 78241 to 78841 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,189 DEBUG Processing 291/526 atomic regions from SNP 87221 to 87821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,375 DEBUG Processing 292/526 atomic regions from SNP 87521 to 88121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,375 DEBUG Processing 262/353 atomic regions from SNP 78541 to 79141 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,557 DEBUG Processing 293/526 atomic regions from SNP 87821 to 88421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,565 DEBUG Processing 263/353 atomic regions from SNP 78841 to 79441 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,737 DEBUG Processing 294/526 atomic regions from SNP 88121 to 88721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,752 DEBUG Processing 264/353 atomic regions from SNP 79141 to 79741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,921 DEBUG Processing 295/526 atomic regions from SNP 88421 to 89021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,942 DEBUG Processing 265/353 atomic regions from SNP 79441 to 80041 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,101 DEBUG Processing 296/526 atomic regions from SNP 88721 to 89321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,128 DEBUG Processing 266/353 atomic regions from SNP 79741 to 80341 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,279 DEBUG Processing 297/526 atomic regions from SNP 89021 to 89621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,313 DEBUG Processing 267/353 atomic regions from SNP 80041 to 80641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,456 DEBUG Processing 298/526 atomic regions from SNP 89321 to 89921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,489 DEBUG Processing 268/353 atomic regions from SNP 80341 to 80941 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,640 DEBUG Processing 299/526 atomic regions from SNP 89621 to 90221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,670 DEBUG Processing 269/353 atomic regions from SNP 80641 to 81241 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,818 DEBUG Processing 300/526 atomic regions from SNP 89921 to 90521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,839 DEBUG Processing 270/353 atomic regions from SNP 80941 to 81541 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,998 DEBUG Processing 301/526 atomic regions from SNP 90221 to 90821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,010 DEBUG Processing 271/353 atomic regions from SNP 81241 to 81841 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,172 DEBUG Processing 272/353 atomic regions from SNP 81541 to 82141 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,179 DEBUG Processing 302/526 atomic regions from SNP 90521 to 91121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,333 DEBUG Processing 273/353 atomic regions from SNP 81841 to 82441 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,358 DEBUG Processing 303/526 atomic regions from SNP 90821 to 91421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,492 DEBUG Processing 274/353 atomic regions from SNP 82141 to 82741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,540 DEBUG Processing 304/526 atomic regions from SNP 91121 to 91721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,655 DEBUG Processing 275/353 atomic regions from SNP 82441 to 83041 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,718 DEBUG Processing 305/526 atomic regions from SNP 91421 to 92021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,818 DEBUG Processing 276/353 atomic regions from SNP 82741 to 83341 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,903 DEBUG Processing 306/526 atomic regions from SNP 91721 to 92321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,978 DEBUG Processing 277/353 atomic regions from SNP 83041 to 83641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,081 DEBUG Processing 307/526 atomic regions from SNP 92021 to 92621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,135 DEBUG Processing 278/353 atomic regions from SNP 83341 to 83941 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,260 DEBUG Processing 308/526 atomic regions from SNP 92321 to 92921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,291 DEBUG Processing 279/353 atomic regions from SNP 83641 to 84241 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,439 DEBUG Processing 309/526 atomic regions from SNP 92621 to 93221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,450 DEBUG Processing 280/353 atomic regions from SNP 83941 to 84541 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,616 DEBUG Processing 281/353 atomic regions from SNP 84241 to 84841 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,620 DEBUG Processing 310/526 atomic regions from SNP 92921 to 93521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,778 DEBUG Processing 282/353 atomic regions from SNP 84541 to 85141 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,800 DEBUG Processing 311/526 atomic regions from SNP 93221 to 93821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,939 DEBUG Processing 283/353 atomic regions from SNP 84841 to 85441 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,978 DEBUG Processing 312/526 atomic regions from SNP 93521 to 94121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,099 DEBUG Processing 284/353 atomic regions from SNP 85141 to 85741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,157 DEBUG Processing 313/526 atomic regions from SNP 93821 to 94421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,258 DEBUG Processing 285/353 atomic regions from SNP 85441 to 86041 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,341 DEBUG Processing 314/526 atomic regions from SNP 94121 to 94721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,421 DEBUG Processing 286/353 atomic regions from SNP 85741 to 86341 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,520 DEBUG Processing 315/526 atomic regions from SNP 94421 to 95021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,582 DEBUG Processing 287/353 atomic regions from SNP 86041 to 86641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,701 DEBUG Processing 316/526 atomic regions from SNP 94721 to 95321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,740 DEBUG Processing 288/353 atomic regions from SNP 86341 to 86941 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,880 DEBUG Processing 317/526 atomic regions from SNP 95021 to 95621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,901 DEBUG Processing 289/353 atomic regions from SNP 86641 to 87241 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,058 DEBUG Processing 290/353 atomic regions from SNP 86941 to 87541 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,064 DEBUG Processing 318/526 atomic regions from SNP 95321 to 95921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,219 DEBUG Processing 291/353 atomic regions from SNP 87241 to 87841 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,243 DEBUG Processing 319/526 atomic regions from SNP 95621 to 96221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,380 DEBUG Processing 292/353 atomic regions from SNP 87541 to 88141 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,424 DEBUG Processing 320/526 atomic regions from SNP 95921 to 96521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,540 DEBUG Processing 293/353 atomic regions from SNP 87841 to 88441 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,613 DEBUG Processing 321/526 atomic regions from SNP 96221 to 96821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,697 DEBUG Processing 294/353 atomic regions from SNP 88141 to 88741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,823 DEBUG Processing 322/526 atomic regions from SNP 96521 to 97121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,856 DEBUG Processing 295/353 atomic regions from SNP 88441 to 89041 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,016 DEBUG Processing 296/353 atomic regions from SNP 88741 to 89341 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,031 DEBUG Processing 323/526 atomic regions from SNP 96821 to 97421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,181 DEBUG Processing 297/353 atomic regions from SNP 89041 to 89641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,240 DEBUG Processing 324/526 atomic regions from SNP 97121 to 97721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,345 DEBUG Processing 298/353 atomic regions from SNP 89341 to 89941 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,428 DEBUG Processing 325/526 atomic regions from SNP 97421 to 98021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,513 DEBUG Processing 299/353 atomic regions from SNP 89641 to 90241 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,625 DEBUG Processing 326/526 atomic regions from SNP 97721 to 98321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,682 DEBUG Processing 300/353 atomic regions from SNP 89941 to 90541 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,822 DEBUG Processing 327/526 atomic regions from SNP 98021 to 98621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,859 DEBUG Processing 301/353 atomic regions from SNP 90241 to 90841 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,009 DEBUG Processing 328/526 atomic regions from SNP 98321 to 98921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,030 DEBUG Processing 302/353 atomic regions from SNP 90541 to 91141 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,199 DEBUG Processing 329/526 atomic regions from SNP 98621 to 99221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,219 DEBUG Processing 303/353 atomic regions from SNP 90841 to 91441 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,391 DEBUG Processing 330/526 atomic regions from SNP 98921 to 99521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,420 DEBUG Processing 304/353 atomic regions from SNP 91141 to 91741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,573 DEBUG Processing 331/526 atomic regions from SNP 99221 to 99821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,613 DEBUG Processing 305/353 atomic regions from SNP 91441 to 92041 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,757 DEBUG Processing 332/526 atomic regions from SNP 99521 to 100121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,789 DEBUG Processing 306/353 atomic regions from SNP 91741 to 92341 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,935 DEBUG Processing 333/526 atomic regions from SNP 99821 to 100421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,965 DEBUG Processing 307/353 atomic regions from SNP 92041 to 92641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,121 DEBUG Processing 334/526 atomic regions from SNP 100121 to 100721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,158 DEBUG Processing 308/353 atomic regions from SNP 92341 to 92941 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,299 DEBUG Processing 335/526 atomic regions from SNP 100421 to 101021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,335 DEBUG Processing 309/353 atomic regions from SNP 92641 to 93241 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,475 DEBUG Processing 336/526 atomic regions from SNP 100721 to 101321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,492 DEBUG Processing 310/353 atomic regions from SNP 92941 to 93541 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,653 DEBUG Processing 311/353 atomic regions from SNP 93241 to 93841 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,653 DEBUG Processing 337/526 atomic regions from SNP 101021 to 101621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,811 DEBUG Processing 312/353 atomic regions from SNP 93541 to 94141 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,830 DEBUG Processing 338/526 atomic regions from SNP 101321 to 101921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,970 DEBUG Processing 313/353 atomic regions from SNP 93841 to 94441 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,008 DEBUG Processing 339/526 atomic regions from SNP 101621 to 102221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,129 DEBUG Processing 314/353 atomic regions from SNP 94141 to 94741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,187 DEBUG Processing 340/526 atomic regions from SNP 101921 to 102521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,295 DEBUG Processing 315/353 atomic regions from SNP 94441 to 95041 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,365 DEBUG Processing 341/526 atomic regions from SNP 102221 to 102821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,473 DEBUG Processing 316/353 atomic regions from SNP 94741 to 95341 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,544 DEBUG Processing 342/526 atomic regions from SNP 102521 to 103121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,649 DEBUG Processing 317/353 atomic regions from SNP 95041 to 95641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,719 DEBUG Processing 343/526 atomic regions from SNP 102821 to 103421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,806 DEBUG Processing 318/353 atomic regions from SNP 95341 to 95941 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,893 DEBUG Processing 344/526 atomic regions from SNP 103121 to 103721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,964 DEBUG Processing 319/353 atomic regions from SNP 95641 to 96241 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,084 DEBUG Processing 345/526 atomic regions from SNP 103421 to 104021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,127 DEBUG Processing 320/353 atomic regions from SNP 95941 to 96541 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,290 DEBUG Processing 321/353 atomic regions from SNP 96241 to 96841 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,295 DEBUG Processing 346/526 atomic regions from SNP 103721 to 104321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,458 DEBUG Processing 322/353 atomic regions from SNP 96541 to 97141 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,511 DEBUG Processing 347/526 atomic regions from SNP 104021 to 104621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,626 DEBUG Processing 323/353 atomic regions from SNP 96841 to 97441 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,724 DEBUG Processing 348/526 atomic regions from SNP 104321 to 104921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,803 DEBUG Processing 324/353 atomic regions from SNP 97141 to 97741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,936 DEBUG Processing 349/526 atomic regions from SNP 104621 to 105221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,986 DEBUG Processing 325/353 atomic regions from SNP 97441 to 98041 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,143 DEBUG Processing 350/526 atomic regions from SNP 104921 to 105521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,161 DEBUG Processing 326/353 atomic regions from SNP 97741 to 98341 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,341 DEBUG Processing 327/353 atomic regions from SNP 98041 to 98641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,351 DEBUG Processing 351/526 atomic regions from SNP 105221 to 105821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,520 DEBUG Processing 328/353 atomic regions from SNP 98341 to 98941 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,571 DEBUG Processing 352/526 atomic regions from SNP 105521 to 106121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,689 DEBUG Processing 329/353 atomic regions from SNP 98641 to 99241 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,787 DEBUG Processing 353/526 atomic regions from SNP 105821 to 106421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,865 DEBUG Processing 330/353 atomic regions from SNP 98941 to 99541 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,985 DEBUG Processing 354/526 atomic regions from SNP 106121 to 106721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,037 DEBUG Processing 331/353 atomic regions from SNP 99241 to 99841 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,168 DEBUG Processing 355/526 atomic regions from SNP 106421 to 107021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,200 DEBUG Processing 332/353 atomic regions from SNP 99541 to 100141 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,364 DEBUG Processing 333/353 atomic regions from SNP 99841 to 100441 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,368 DEBUG Processing 356/526 atomic regions from SNP 106721 to 107321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,528 DEBUG Processing 334/353 atomic regions from SNP 100141 to 100741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,553 DEBUG Processing 357/526 atomic regions from SNP 107021 to 107621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,690 DEBUG Processing 335/353 atomic regions from SNP 100441 to 101041 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,737 DEBUG Processing 358/526 atomic regions from SNP 107321 to 107921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,859 DEBUG Processing 336/353 atomic regions from SNP 100741 to 101341 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,923 DEBUG Processing 359/526 atomic regions from SNP 107621 to 108221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,027 DEBUG Processing 337/353 atomic regions from SNP 101041 to 101641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,111 DEBUG Processing 360/526 atomic regions from SNP 107921 to 108521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,192 DEBUG Processing 338/353 atomic regions from SNP 101341 to 101941 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,309 DEBUG Processing 361/526 atomic regions from SNP 108221 to 108821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,366 DEBUG Processing 339/353 atomic regions from SNP 101641 to 102241 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,505 DEBUG Processing 362/526 atomic regions from SNP 108521 to 109121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,544 DEBUG Processing 340/353 atomic regions from SNP 101941 to 102541 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,696 DEBUG Processing 363/526 atomic regions from SNP 108821 to 109421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,721 DEBUG Processing 341/353 atomic regions from SNP 102241 to 102841 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,889 DEBUG Processing 364/526 atomic regions from SNP 109121 to 109721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,898 DEBUG Processing 342/353 atomic regions from SNP 102541 to 103141 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,077 DEBUG Processing 343/353 atomic regions from SNP 102841 to 103441 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,097 DEBUG Processing 365/526 atomic regions from SNP 109421 to 110021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,257 DEBUG Processing 344/353 atomic regions from SNP 103141 to 103741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,310 DEBUG Processing 366/526 atomic regions from SNP 109721 to 110321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,420 DEBUG Processing 345/353 atomic regions from SNP 103441 to 104041 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,491 DEBUG Processing 367/526 atomic regions from SNP 110021 to 110621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,583 DEBUG Processing 346/353 atomic regions from SNP 103741 to 104341 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,676 DEBUG Processing 368/526 atomic regions from SNP 110321 to 110921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,740 DEBUG Processing 347/353 atomic regions from SNP 104041 to 104641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,854 DEBUG Processing 369/526 atomic regions from SNP 110621 to 111221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,898 DEBUG Processing 348/353 atomic regions from SNP 104341 to 104941 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,053 DEBUG Processing 370/526 atomic regions from SNP 110921 to 111521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,056 DEBUG Processing 349/353 atomic regions from SNP 104641 to 105241 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,215 DEBUG Processing 350/353 atomic regions from SNP 104941 to 105541 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,252 DEBUG Processing 371/526 atomic regions from SNP 111221 to 111821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,384 DEBUG Processing 351/353 atomic regions from SNP 105241 to 105841 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,429 DEBUG Processing 372/526 atomic regions from SNP 111521 to 112121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,558 DEBUG Processing 352/353 atomic regions from SNP 105541 to 106141 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,603 DEBUG Processing 373/526 atomic regions from SNP 111821 to 112421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,719 DEBUG Processing 353/353 atomic regions from SNP 105841 to 106441 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,780 DEBUG Processing 374/526 atomic regions from SNP 112121 to 112721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,840 DEBUG Unique SNPs positions in subchromosome 1: 106442 2025-01-31 09:59:53,955 DEBUG Processing 375/526 atomic regions from SNP 112421 to 113021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,140 DEBUG Processing 376/526 atomic regions from SNP 112721 to 113321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,320 DEBUG Processing 377/526 atomic regions from SNP 113021 to 113621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,495 DEBUG Processing 378/526 atomic regions from SNP 113321 to 113921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,611 DEBUG Subchromosome time: 78.1785171868978, subchromosome SNPs: 106442 2025-01-31 09:59:54,612 DEBUG Estimated BADs: [7.25, 1.81, 3.62, 1.81, 3.62, 1.81, 3.62, 7.25, 3.62, 1.21, 3.62] SNP counts: [13738, 8029, 3930, 4193, 24984, 3904, 10853, 8808, 5634, 5364, 17005] SNP IDs counts: [13738, 8029, 3930, 4193, 24984, 3904, 10853, 8808, 5634, 5364, 17005] Critical gap: 409667bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 11.00Mbp, 15.53Mbp, 17.62Mbp, 19.93Mbp, 33.33Mbp, 35.62Mbp, 41.65Mbp, 46.30Mbp, 49.28Mbp, 52.30Mbp, 61.43Mbp] 2025-01-31 09:59:54,612 DEBUG chr19 time: 78.17890854994766 s 2025-01-31 09:59:54,668 DEBUG chr19: Fitting background model for 11 segments 2025-01-31 09:59:54,681 DEBUG Processing 379/526 atomic regions from SNP 113621 to 114221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,856 DEBUG Processing 380/526 atomic regions from SNP 113921 to 114521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,028 DEBUG Processing 381/526 atomic regions from SNP 114221 to 114821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,197 DEBUG Processing 382/526 atomic regions from SNP 114521 to 115121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,373 DEBUG Processing 383/526 atomic regions from SNP 114821 to 115421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,545 DEBUG Processing 384/526 atomic regions from SNP 115121 to 115721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,715 DEBUG Processing 385/526 atomic regions from SNP 115421 to 116021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,892 DEBUG Processing 386/526 atomic regions from SNP 115721 to 116321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,078 DEBUG Processing 387/526 atomic regions from SNP 116021 to 116621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,278 DEBUG Processing 388/526 atomic regions from SNP 116321 to 116921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,479 DEBUG Processing 389/526 atomic regions from SNP 116621 to 117221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,677 DEBUG Processing 390/526 atomic regions from SNP 116921 to 117521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,881 DEBUG Processing 391/526 atomic regions from SNP 117221 to 117821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,070 DEBUG Processing 392/526 atomic regions from SNP 117521 to 118121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,248 DEBUG Processing 393/526 atomic regions from SNP 117821 to 118421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,447 DEBUG Processing 394/526 atomic regions from SNP 118121 to 118721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,625 DEBUG Processing 395/526 atomic regions from SNP 118421 to 119021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,802 DEBUG Processing 396/526 atomic regions from SNP 118721 to 119321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,975 DEBUG Processing 397/526 atomic regions from SNP 119021 to 119621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,149 DEBUG Processing 398/526 atomic regions from SNP 119321 to 119921 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,326 DEBUG Processing 399/526 atomic regions from SNP 119621 to 120221 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,503 DEBUG Processing 400/526 atomic regions from SNP 119921 to 120521 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,680 DEBUG Processing 401/526 atomic regions from SNP 120221 to 120821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,860 DEBUG Processing 402/526 atomic regions from SNP 120521 to 121121 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,038 DEBUG Processing 403/526 atomic regions from SNP 120821 to 121421 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,212 DEBUG Processing 404/526 atomic regions from SNP 121121 to 121721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,386 DEBUG Processing 405/526 atomic regions from SNP 121421 to 122021 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,559 DEBUG Processing 406/526 atomic regions from SNP 121721 to 122321 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,732 DEBUG Processing 407/526 atomic regions from SNP 122021 to 122621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,927 DEBUG Processing 408/526 atomic regions from SNP 122321 to 122921 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,115 DEBUG Processing 409/526 atomic regions from SNP 122621 to 123221 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,287 DEBUG Processing 410/526 atomic regions from SNP 122921 to 123521 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,457 DEBUG Processing 411/526 atomic regions from SNP 123221 to 123821 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,627 DEBUG Processing 412/526 atomic regions from SNP 123521 to 124121 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,799 DEBUG Processing 413/526 atomic regions from SNP 123821 to 124421 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,968 DEBUG Processing 414/526 atomic regions from SNP 124121 to 124721 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,138 DEBUG Processing 415/526 atomic regions from SNP 124421 to 125021 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,314 DEBUG Processing 416/526 atomic regions from SNP 124721 to 125321 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,489 DEBUG Processing 417/526 atomic regions from SNP 125021 to 125621 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,664 DEBUG Processing 418/526 atomic regions from SNP 125321 to 125921 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,842 DEBUG Processing 419/526 atomic regions from SNP 125621 to 126221 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,013 DEBUG Processing 420/526 atomic regions from SNP 125921 to 126521 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,182 DEBUG Processing 421/526 atomic regions from SNP 126221 to 126821 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,356 DEBUG Processing 422/526 atomic regions from SNP 126521 to 127121 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,528 DEBUG Processing 423/526 atomic regions from SNP 126821 to 127421 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,699 DEBUG Processing 424/526 atomic regions from SNP 127121 to 127721 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,869 DEBUG Processing 425/526 atomic regions from SNP 127421 to 128021 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,041 DEBUG Processing 426/526 atomic regions from SNP 127721 to 128321 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,224 DEBUG Processing 427/526 atomic regions from SNP 128021 to 128621 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,416 DEBUG Processing 428/526 atomic regions from SNP 128321 to 128921 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,600 DEBUG Processing 429/526 atomic regions from SNP 128621 to 129221 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,787 DEBUG Processing 430/526 atomic regions from SNP 128921 to 129521 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,973 DEBUG Processing 431/526 atomic regions from SNP 129221 to 129821 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,155 DEBUG Processing 432/526 atomic regions from SNP 129521 to 130121 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,342 DEBUG Processing 433/526 atomic regions from SNP 129821 to 130421 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,538 DEBUG Processing 434/526 atomic regions from SNP 130121 to 130721 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,730 DEBUG Processing 435/526 atomic regions from SNP 130421 to 131021 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,915 DEBUG Processing 436/526 atomic regions from SNP 130721 to 131321 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,105 DEBUG Processing 437/526 atomic regions from SNP 131021 to 131621 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,298 DEBUG Processing 438/526 atomic regions from SNP 131321 to 131921 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,491 DEBUG Processing 439/526 atomic regions from SNP 131621 to 132221 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,669 DEBUG Processing 440/526 atomic regions from SNP 131921 to 132521 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,844 DEBUG Processing 441/526 atomic regions from SNP 132221 to 132821 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,021 DEBUG Processing 442/526 atomic regions from SNP 132521 to 133121 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,200 DEBUG Processing 443/526 atomic regions from SNP 132821 to 133421 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,376 DEBUG Processing 444/526 atomic regions from SNP 133121 to 133721 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,547 DEBUG Processing 445/526 atomic regions from SNP 133421 to 134021 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,725 DEBUG Processing 446/526 atomic regions from SNP 133721 to 134321 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,917 DEBUG Processing 447/526 atomic regions from SNP 134021 to 134621 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,118 DEBUG Processing 448/526 atomic regions from SNP 134321 to 134921 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,297 DEBUG Processing 449/526 atomic regions from SNP 134621 to 135221 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,477 DEBUG Processing 450/526 atomic regions from SNP 134921 to 135521 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,662 DEBUG Processing 451/526 atomic regions from SNP 135221 to 135821 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,858 DEBUG Processing 452/526 atomic regions from SNP 135521 to 136121 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,056 DEBUG Processing 453/526 atomic regions from SNP 135821 to 136421 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,252 DEBUG Processing 454/526 atomic regions from SNP 136121 to 136721 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,460 DEBUG Processing 455/526 atomic regions from SNP 136421 to 137021 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,648 DEBUG Processing 456/526 atomic regions from SNP 136721 to 137321 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,818 DEBUG Processing 457/526 atomic regions from SNP 137021 to 137621 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,990 DEBUG Processing 458/526 atomic regions from SNP 137321 to 137921 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,157 DEBUG Processing 459/526 atomic regions from SNP 137621 to 138221 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,324 DEBUG Processing 460/526 atomic regions from SNP 137921 to 138521 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,490 DEBUG Processing 461/526 atomic regions from SNP 138221 to 138821 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,660 DEBUG Processing 462/526 atomic regions from SNP 138521 to 139121 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,828 DEBUG Processing 463/526 atomic regions from SNP 138821 to 139421 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,997 DEBUG Processing 464/526 atomic regions from SNP 139121 to 139721 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,167 DEBUG Processing 465/526 atomic regions from SNP 139421 to 140021 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,348 DEBUG Processing 466/526 atomic regions from SNP 139721 to 140321 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,549 DEBUG Processing 467/526 atomic regions from SNP 140021 to 140621 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,745 DEBUG Processing 468/526 atomic regions from SNP 140321 to 140921 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,933 DEBUG Processing 469/526 atomic regions from SNP 140621 to 141221 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,120 DEBUG Processing 470/526 atomic regions from SNP 140921 to 141521 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,297 DEBUG Processing 471/526 atomic regions from SNP 141221 to 141821 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,483 DEBUG Processing 472/526 atomic regions from SNP 141521 to 142121 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,657 DEBUG Processing 473/526 atomic regions from SNP 141821 to 142421 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,830 DEBUG Processing 474/526 atomic regions from SNP 142121 to 142721 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,995 DEBUG Processing 475/526 atomic regions from SNP 142421 to 143021 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,162 DEBUG Processing 476/526 atomic regions from SNP 142721 to 143321 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,330 DEBUG Processing 477/526 atomic regions from SNP 143021 to 143621 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,500 DEBUG Processing 478/526 atomic regions from SNP 143321 to 143921 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,669 DEBUG Processing 479/526 atomic regions from SNP 143621 to 144221 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,851 DEBUG Processing 480/526 atomic regions from SNP 143921 to 144521 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,032 DEBUG Processing 481/526 atomic regions from SNP 144221 to 144821 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,233 DEBUG Processing 482/526 atomic regions from SNP 144521 to 145121 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,414 DEBUG Processing 483/526 atomic regions from SNP 144821 to 145421 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,590 DEBUG Processing 484/526 atomic regions from SNP 145121 to 145721 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,763 DEBUG Processing 485/526 atomic regions from SNP 145421 to 146021 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,940 DEBUG Processing 486/526 atomic regions from SNP 145721 to 146321 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,116 DEBUG Processing 487/526 atomic regions from SNP 146021 to 146621 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,282 DEBUG Processing 488/526 atomic regions from SNP 146321 to 146921 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,448 DEBUG Processing 489/526 atomic regions from SNP 146621 to 147221 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,619 DEBUG Processing 490/526 atomic regions from SNP 146921 to 147521 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,791 DEBUG Processing 491/526 atomic regions from SNP 147221 to 147821 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,966 DEBUG Processing 492/526 atomic regions from SNP 147521 to 148121 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,137 DEBUG Processing 493/526 atomic regions from SNP 147821 to 148421 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,320 DEBUG Processing 494/526 atomic regions from SNP 148121 to 148721 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,503 DEBUG Processing 495/526 atomic regions from SNP 148421 to 149021 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,691 DEBUG Processing 496/526 atomic regions from SNP 148721 to 149321 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,866 DEBUG Processing 497/526 atomic regions from SNP 149021 to 149621 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,034 DEBUG Processing 498/526 atomic regions from SNP 149321 to 149921 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,203 DEBUG Processing 499/526 atomic regions from SNP 149621 to 150221 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,370 DEBUG Processing 500/526 atomic regions from SNP 149921 to 150521 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,537 DEBUG Processing 501/526 atomic regions from SNP 150221 to 150821 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,705 DEBUG Processing 502/526 atomic regions from SNP 150521 to 151121 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,873 DEBUG Processing 503/526 atomic regions from SNP 150821 to 151421 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,040 DEBUG Processing 504/526 atomic regions from SNP 151121 to 151721 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,207 DEBUG Processing 505/526 atomic regions from SNP 151421 to 152021 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,373 DEBUG Processing 506/526 atomic regions from SNP 151721 to 152321 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,540 DEBUG Processing 507/526 atomic regions from SNP 152021 to 152621 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,707 DEBUG Processing 508/526 atomic regions from SNP 152321 to 152921 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,873 DEBUG Processing 509/526 atomic regions from SNP 152621 to 153221 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,043 DEBUG Processing 510/526 atomic regions from SNP 152921 to 153521 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,210 DEBUG Processing 511/526 atomic regions from SNP 153221 to 153821 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,376 DEBUG Processing 512/526 atomic regions from SNP 153521 to 154121 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,545 DEBUG Processing 513/526 atomic regions from SNP 153821 to 154421 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,714 DEBUG Processing 514/526 atomic regions from SNP 154121 to 154721 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,883 DEBUG Processing 515/526 atomic regions from SNP 154421 to 155021 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,052 DEBUG Processing 516/526 atomic regions from SNP 154721 to 155321 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,219 DEBUG Processing 517/526 atomic regions from SNP 155021 to 155621 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,387 DEBUG Processing 518/526 atomic regions from SNP 155321 to 155921 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,555 DEBUG Processing 519/526 atomic regions from SNP 155621 to 156221 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,725 DEBUG Processing 520/526 atomic regions from SNP 155921 to 156521 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,893 DEBUG Processing 521/526 atomic regions from SNP 156221 to 156821 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,061 DEBUG Processing 522/526 atomic regions from SNP 156521 to 157121 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,231 DEBUG Processing 523/526 atomic regions from SNP 156821 to 157421 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,402 DEBUG Processing 524/526 atomic regions from SNP 157121 to 157721 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,571 DEBUG Processing 525/526 atomic regions from SNP 157421 to 158021 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,742 DEBUG Processing 526/526 atomic regions from SNP 157721 to 158321 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,849 DEBUG Unique SNPs positions in subchromosome 1: 158322 2025-01-31 10:00:21,376 DEBUG Subchromosome time: 121.82398023910355, subchromosome SNPs: 158322 2025-01-31 10:00:21,376 DEBUG Estimated BADs: [2.74, 0.91, 2.74, 1.37, 5.49, 2.74, 8.23, 2.74, 1.37] SNP counts: [24773, 3612, 13843, 9033, 12052, 40146, 2221, 47014, 5628] SNP IDs counts: [24773, 3612, 13843, 9033, 12052, 40146, 2221, 47014, 5628] Critical gap: 505476bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.91Mbp, 19.04Mbp, 26.71Mbp, 31.75Mbp, 38.29Mbp, 60.46Mbp, 61.61Mbp, 87.19Mbp, 90.70Mbp] 2025-01-31 10:00:21,377 DEBUG chr18 time: 121.82437764108181 s 2025-01-31 10:00:21,456 DEBUG chr18: Fitting background model for 9 segments 2025-01-31 10:00:28,268 DEBUG Results of fit_background_model emitted. 2025-01-31 10:00:28,371 INFO Signal to noise fit: SPOT=0.13±0.08 2025-01-31 10:00:28,377 INFO Found 7 outlier SPOT score segments at iteration 1. Refitting with approximated signal/noise constraint. 2025-01-31 10:00:28,412 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:00:28,413 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 10:00:32,384 DEBUG chr10: Fitting background model for 1 segments 2025-01-31 10:00:32,426 DEBUG chr11: Fitting background model for 1 segments 2025-01-31 10:00:32,769 DEBUG chr13: Fitting background model for 2 segments 2025-01-31 10:00:33,602 DEBUG chr7: Fitting background model for 3 segments 2025-01-31 10:00:49,774 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 10:00:49,842 INFO Signal to noise fit: SPOT=0.13±0.07 2025-01-31 10:00:49,846 INFO Found 5 outlier SPOT score segments at iteration 2. Refitting with approximated signal/noise constraint. 2025-01-31 10:00:49,879 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:00:49,879 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 10:00:53,936 DEBUG chr11: Fitting background model for 1 segments 2025-01-31 10:00:54,032 DEBUG chr9: Fitting background model for 1 segments 2025-01-31 10:00:54,238 DEBUG chr13: Fitting background model for 1 segments 2025-01-31 10:00:54,874 DEBUG chr7: Fitting background model for 2 segments 2025-01-31 10:01:03,432 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 10:01:03,500 INFO Signal to noise fit: SPOT=0.13±0.07 2025-01-31 10:01:03,504 INFO Found 1 outlier SPOT score segments at iteration 3. Refitting with approximated signal/noise constraint. 2025-01-31 10:01:03,545 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:01:03,545 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 10:01:08,163 DEBUG chr13: Fitting background model for 1 segments 2025-01-31 10:01:12,844 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 10:01:12,918 INFO Signal to noise fit: SPOT=0.13±0.07 2025-01-31 10:01:12,924 INFO Final SPOT score: 0.13±0.07. Refitted 8 segments. 2025-01-31 10:01:12,965 INFO Estimating per-bp parameters of background model 2025-01-31 10:01:12,972 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:01:12,972 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 10:01:18,759 DEBUG chr5:3002500-5875251: Successfully fit background model for 2,519,867 bp. Use segment r for 0 bp 2025-01-31 10:01:19,521 DEBUG chr3:3000000-8794751: Successfully fit background model for 5,014,760 bp. Use segment r for 0 bp 2025-01-31 10:01:19,665 DEBUG chr3:8794751-10125251: Successfully fit background model for 1,217,563 bp. Use segment r for 0 bp 2025-01-31 10:01:20,244 DEBUG chrX:3055000-7429251: Successfully fit background model for 1,889,168 bp. Use segment r for 0 bp 2025-01-31 10:01:20,306 DEBUG chr4:3050000-16254251: Successfully fit background model for 11,590,840 bp. Use segment r for 0 bp 2025-01-31 10:01:20,506 DEBUG chr5:5875251-20873751: Successfully fit background model for 11,959,882 bp. Use segment r for 0 bp 2025-01-31 10:01:20,598 DEBUG chr4:16254251-18952251: Successfully fit background model for 2,325,054 bp. Use segment r for 0 bp 2025-01-31 10:01:20,723 DEBUG chr3:10125251-19111751: Successfully fit background model for 7,570,515 bp. Use segment r for 0 bp 2025-01-31 10:01:20,806 DEBUG chr3:19111751-19776751: Successfully fit background model for 622,963 bp. Use segment r for 0 bp 2025-01-31 10:01:20,861 DEBUG chr5:20873751-24319251: Successfully fit background model for 3,173,855 bp. Use segment r for 0 bp 2025-01-31 10:01:20,939 DEBUG chr5:24319251-24942751: Successfully fit background model for 602,036 bp. Use segment r for 0 bp 2025-01-31 10:01:21,203 DEBUG chrX:7429251-15636251: Successfully fit background model for 7,245,881 bp. Use segment r for 0 bp 2025-01-31 10:01:21,547 DEBUG chr5:24942751-30452501: Successfully fit background model for 4,930,635 bp. Use segment r for 0 bp 2025-01-31 10:01:21,640 DEBUG chr3:19776751-27039251: Successfully fit background model for 6,325,865 bp. Use segment r for 0 bp 2025-01-31 10:01:22,048 DEBUG chr2:3051000-24916751: Successfully fit background model for 19,844,163 bp. Use segment r for 0 bp 2025-01-31 10:01:22,217 DEBUG chr5:30452501-36695251: Successfully fit background model for 5,960,970 bp. Use segment r for 0 bp 2025-01-31 10:01:22,248 DEBUG chr4:18952251-32360751: Successfully fit background model for 11,930,130 bp. Use segment r for 0 bp 2025-01-31 10:01:22,396 DEBUG chrX:15636251-26917001: Successfully fit background model for 7,846,410 bp. Use segment r for 0 bp 2025-01-31 10:01:22,541 DEBUG chr5:36695251-39764251: Successfully fit background model for 2,892,327 bp. Use segment r for 0 bp 2025-01-31 10:01:22,542 DEBUG chr4:32360751-34957251: Successfully fit background model for 2,456,705 bp. Use segment r for 0 bp 2025-01-31 10:01:22,874 DEBUG chr3:27039251-36866751: Successfully fit background model for 9,075,932 bp. Use segment r for 0 bp 2025-01-31 10:01:23,070 DEBUG chr4:34957251-40075751: Successfully fit background model for 4,542,515 bp. Use segment r for 0 bp 2025-01-31 10:01:23,253 DEBUG chr4:40075751-41857501: Successfully fit background model for 1,614,267 bp. Use segment r for 0 bp 2025-01-31 10:01:23,302 DEBUG chrX:31132500-39240251: Successfully fit background model for 3,087,659 bp. Use segment r for 0 bp 2025-01-31 10:01:23,594 DEBUG chr3:36866751-43590251: Successfully fit background model for 6,072,034 bp. Use segment r for 0 bp 2025-01-31 10:01:23,762 DEBUG chr2:24916751-36471501: Successfully fit background model for 11,175,038 bp. Use segment r for 0 bp 2025-01-31 10:01:24,024 DEBUG chr4:42724000-48739501: Successfully fit background model for 5,724,767 bp. Use segment r for 0 bp 2025-01-31 10:01:24,092 DEBUG chr2:36471501-39709251: Successfully fit background model for 2,952,180 bp. Use segment r for 0 bp 2025-01-31 10:01:24,103 DEBUG chr3:43590251-48909751: Successfully fit background model for 4,735,676 bp. Use segment r for 0 bp 2025-01-31 10:01:24,322 DEBUG chr4:48739501-51751251: Successfully fit background model for 2,655,482 bp. Use segment r for 0 bp 2025-01-31 10:01:24,391 DEBUG chr5:39764251-51047251: Successfully fit background model for 10,218,069 bp. Use segment r for 0 bp 2025-01-31 10:01:24,402 DEBUG chr3:48909751-51846251: Successfully fit background model for 2,641,561 bp. Use segment r for 0 bp 2025-01-31 10:01:24,483 DEBUG chr2:39709251-43233251: Successfully fit background model for 3,220,566 bp. Use segment r for 0 bp 2025-01-31 10:01:24,525 DEBUG chr1:3000500-33434501: Successfully fit background model for 27,075,198 bp. Use segment r for 0 bp 2025-01-31 10:01:24,765 DEBUG chr5:51047251-54402751: Successfully fit background model for 3,222,069 bp. Use segment r for 0 bp 2025-01-31 10:01:25,549 DEBUG chr1:33434501-39660751: Successfully fit background model for 5,946,826 bp. Use segment r for 0 bp 2025-01-31 10:01:26,224 DEBUG chr5:54402751-63297751: Successfully fit background model for 7,866,557 bp. Use segment r for 0 bp 2025-01-31 10:01:26,410 DEBUG chr1:39660751-47662251: Successfully fit background model for 7,221,511 bp. Use segment r for 0 bp 2025-01-31 10:01:26,644 DEBUG chr4:51751251-64625251: Successfully fit background model for 10,402,882 bp. Use segment r for 0 bp 2025-01-31 10:01:26,751 DEBUG chr5:63297751-68475251: Successfully fit background model for 4,879,607 bp. Use segment r for 0 bp 2025-01-31 10:01:26,894 DEBUG chr1:47662251-52086751: Successfully fit background model for 3,972,514 bp. Use segment r for 0 bp 2025-01-31 10:01:27,108 DEBUG chr5:68475251-71658251: Successfully fit background model for 2,803,801 bp. Use segment r for 0 bp 2025-01-31 10:01:27,776 DEBUG chr3:51846251-70877251: Successfully fit background model for 17,221,949 bp. Use segment r for 0 bp 2025-01-31 10:01:28,203 DEBUG chr5:71658251-78126251: Successfully fit background model for 6,093,599 bp. Use segment r for 0 bp 2025-01-31 10:01:29,105 DEBUG chr3:70877251-77985751: Successfully fit background model for 6,339,595 bp. Use segment r for 0 bp 2025-01-31 10:01:29,373 DEBUG chr2:43233251-67776251: Successfully fit background model for 22,596,821 bp. Use segment r for 0 bp 2025-01-31 10:01:30,006 DEBUG chr3:77985751-85553251: Successfully fit background model for 6,981,459 bp. Use segment r for 0 bp 2025-01-31 10:01:30,132 DEBUG chr5:78126251-88012751: Successfully fit background model for 8,842,835 bp. Use segment r for 0 bp 2025-01-31 10:01:30,269 DEBUG chr3:85553251-87734751: Successfully fit background model for 2,065,652 bp. Use segment r for 0 bp 2025-01-31 10:01:30,310 DEBUG chr4:64625251-80358751: Successfully fit background model for 13,937,520 bp. Use segment r for 0 bp 2025-01-31 10:01:30,383 DEBUG chrX:39240251-73048751: Successfully fit background model for 28,178,022 bp. Use segment r for 0 bp 2025-01-31 10:01:30,568 DEBUG chrX:73048751-74204751: Successfully fit background model for 944,087 bp. Use segment r for 0 bp 2025-01-31 10:01:30,587 DEBUG chr3:87734751-90456751: Successfully fit background model for 2,585,914 bp. Use segment r for 0 bp 2025-01-31 10:01:30,999 DEBUG chr3:90456751-94340251: Successfully fit background model for 2,974,171 bp. Use segment r for 0 bp 2025-01-31 10:01:31,265 DEBUG chr3:94340251-96908751: Successfully fit background model for 2,357,358 bp. Use segment r for 0 bp 2025-01-31 10:01:31,302 DEBUG chr4:80358751-89806751: Successfully fit background model for 8,583,617 bp. Use segment r for 0 bp 2025-01-31 10:01:31,541 DEBUG chr1:52086751-73893751: Successfully fit background model for 20,251,117 bp. Use segment r for 0 bp 2025-01-31 10:01:31,596 DEBUG chr2:67776251-81019751: Successfully fit background model for 12,616,335 bp. Use segment r for 0 bp 2025-01-31 10:01:31,619 DEBUG chr4:89806751-92989251: Successfully fit background model for 2,802,349 bp. Use segment r for 0 bp 2025-01-31 10:01:31,727 DEBUG chr1:73893751-75366251: Successfully fit background model for 1,370,576 bp. Use segment r for 0 bp 2025-01-31 10:01:31,977 DEBUG chr2:81019751-84650251: Successfully fit background model for 3,089,390 bp. Use segment r for 0 bp 2025-01-31 10:01:32,076 DEBUG chr4:92989251-96892501: Successfully fit background model for 3,523,150 bp. Use segment r for 0 bp 2025-01-31 10:01:32,081 DEBUG chr2:84650251-85378751: Successfully fit background model for 682,766 bp. Use segment r for 0 bp 2025-01-31 10:01:32,621 DEBUG chr2:85378751-89636251: Successfully fit background model for 3,721,055 bp. Use segment r for 0 bp 2025-01-31 10:01:32,782 DEBUG chr2:89636251-90879251: Successfully fit background model for 931,811 bp. Use segment r for 0 bp 2025-01-31 10:01:33,222 DEBUG chr2:90879251-94983251: Successfully fit background model for 3,961,991 bp. Use segment r for 0 bp 2025-01-31 10:01:33,962 DEBUG chr3:96908751-107200251: Successfully fit background model for 9,479,726 bp. Use segment r for 0 bp 2025-01-31 10:01:34,140 DEBUG chr3:107200251-108754751: Successfully fit background model for 1,513,246 bp. Use segment r for 0 bp 2025-01-31 10:01:34,428 DEBUG chr1:75366251-84837751: Successfully fit background model for 8,738,888 bp. Use segment r for 0 bp 2025-01-31 10:01:34,488 DEBUG chr2:94983251-100495001: Successfully fit background model for 4,795,546 bp. Use segment r for 0 bp 2025-01-31 10:01:34,873 DEBUG chr4:96892501-106692251: Successfully fit background model for 9,205,270 bp. Use segment r for 0 bp 2025-01-31 10:01:35,266 DEBUG chr2:100495001-107766251: Successfully fit background model for 6,611,608 bp. Use segment r for 0 bp 2025-01-31 10:01:35,268 DEBUG chr4:106692251-110401751: Successfully fit background model for 3,520,430 bp. Use segment r for 0 bp 2025-01-31 10:01:35,455 DEBUG chr4:110401751-111966251: Successfully fit background model for 1,376,515 bp. Use segment r for 0 bp 2025-01-31 10:01:35,664 DEBUG chr4:111966251-113860251: Successfully fit background model for 1,649,278 bp. Use segment r for 0 bp 2025-01-31 10:01:35,872 DEBUG chr4:113860251-115731251: Successfully fit background model for 1,608,911 bp. Use segment r for 0 bp 2025-01-31 10:01:36,365 DEBUG chr1:84837751-93745751: Successfully fit background model for 8,074,603 bp. Use segment r for 0 bp 2025-01-31 10:01:36,486 DEBUG chrX:74204751-99029251: Successfully fit background model for 20,841,741 bp. Use segment r for 0 bp 2025-01-31 10:01:36,927 DEBUG chr3:108754751-121141751: Successfully fit background model for 11,042,474 bp. Use segment r for 0 bp 2025-01-31 10:01:37,052 DEBUG chrX:99029251-103594251: Successfully fit background model for 4,143,856 bp. Use segment r for 0 bp 2025-01-31 10:01:37,063 DEBUG chr3:121141751-122236751: Successfully fit background model for 1,068,148 bp. Use segment r for 0 bp 2025-01-31 10:01:37,307 DEBUG chr5:88012751-110268251: Successfully fit background model for 18,408,413 bp. Use segment r for 1,323 bp 2025-01-31 10:01:37,440 DEBUG chr2:107766251-118629751: Successfully fit background model for 9,931,605 bp. Use segment r for 0 bp 2025-01-31 10:01:37,566 DEBUG chr3:122236751-127192751: Successfully fit background model for 4,606,398 bp. Use segment r for 0 bp 2025-01-31 10:01:37,810 DEBUG chr1:93745751-104175251: Successfully fit background model for 9,056,052 bp. Use segment r for 0 bp 2025-01-31 10:01:37,865 DEBUG chr2:118629751-123018251: Successfully fit background model for 4,165,739 bp. Use segment r for 0 bp 2025-01-31 10:01:37,962 DEBUG chr2:123018251-123702751: Successfully fit background model for 618,923 bp. Use segment r for 0 bp 2025-01-31 10:01:38,180 DEBUG chrX:103594251-113340751: Successfully fit background model for 8,270,002 bp. Use segment r for 0 bp 2025-01-31 10:01:38,189 DEBUG chr1:104175251-108082751: Successfully fit background model for 3,540,231 bp. Use segment r for 0 bp 2025-01-31 10:01:38,332 DEBUG chr2:123702751-127300751: Successfully fit background model for 3,381,120 bp. Use segment r for 0 bp 2025-01-31 10:01:38,701 DEBUG chr2:127300751-131131251: Successfully fit background model for 3,685,106 bp. Use segment r for 0 bp 2025-01-31 10:01:38,710 DEBUG chr3:127192751-137104751: Successfully fit background model for 9,161,475 bp. Use segment r for 0 bp 2025-01-31 10:01:38,930 DEBUG chr3:137104751-139255751: Successfully fit background model for 2,012,913 bp. Use segment r for 0 bp 2025-01-31 10:01:38,953 DEBUG chr1:108082751-115639251: Successfully fit background model for 6,623,859 bp. Use segment r for 0 bp 2025-01-31 10:01:39,022 DEBUG chr5:110268251-125336251: Successfully fit background model for 14,616,996 bp. Use segment r for 0 bp 2025-01-31 10:01:39,211 DEBUG chr1:115639251-118358251: Successfully fit background model for 2,325,958 bp. Use segment r for 0 bp 2025-01-31 10:01:39,219 DEBUG chr3:139255751-142088251: Successfully fit background model for 2,583,528 bp. Use segment r for 0 bp 2025-01-31 10:01:39,291 DEBUG chr2:131131251-137434751: Successfully fit background model for 5,908,661 bp. Use segment r for 0 bp 2025-01-31 10:01:39,371 DEBUG chr1:118358251-120072251: Successfully fit background model for 1,666,436 bp. Use segment r for 0 bp 2025-01-31 10:01:39,591 DEBUG chr4:115731251-141734251: Successfully fit background model for 24,273,835 bp. Use segment r for 0 bp 2025-01-31 10:01:39,641 DEBUG chr2:137434751-141267251: Successfully fit background model for 3,544,371 bp. Use segment r for 0 bp 2025-01-31 10:01:39,683 DEBUG chr3:142088251-146965501: Successfully fit background model for 4,628,442 bp. Use segment r for 0 bp 2025-01-31 10:01:39,913 DEBUG chr5:125336251-134010751: Successfully fit background model for 8,269,151 bp. Use segment r for 0 bp 2025-01-31 10:01:40,081 DEBUG chrX:113340751-124247501: Successfully fit background model for 8,538,022 bp. Use segment r for 421 bp 2025-01-31 10:01:40,123 DEBUG chr3:146965501-151627751: Successfully fit background model for 4,418,299 bp. Use segment r for 0 bp 2025-01-31 10:01:40,251 DEBUG chr4:141734251-148033751: Successfully fit background model for 4,065,136 bp. Use segment r for 0 bp 2025-01-31 10:01:40,438 DEBUG chr3:151627751-154897251: Successfully fit background model for 3,090,335 bp. Use segment r for 0 bp 2025-01-31 10:01:40,570 DEBUG chr1:120072251-131009251: Successfully fit background model for 10,162,966 bp. Use segment r for 0 bp 2025-01-31 10:01:40,877 DEBUG chr2:141267251-152310251: Successfully fit background model for 10,006,347 bp. Use segment r for 0 bp 2025-01-31 10:01:40,887 DEBUG chrX:126004000-133852751: Successfully fit background model for 6,746,768 bp. Use segment r for 0 bp 2025-01-31 10:01:40,987 DEBUG chr3:154897251-160039680: Successfully fit background model for 4,524,711 bp. Use segment r for 0 bp 2025-01-31 10:01:40,997 DEBUG chr5:134010751-145068251: Successfully fit background model for 10,457,398 bp. Use segment r for 0 bp 2025-01-31 10:01:41,054 DEBUG chr1:131009251-136108751: Successfully fit background model for 4,971,593 bp. Use segment r for 0 bp 2025-01-31 10:01:41,131 DEBUG chr4:148033751-156508116: Successfully fit background model for 8,060,757 bp. Use segment r for 0 bp 2025-01-31 10:01:41,362 DEBUG chr2:152310251-157491251: Successfully fit background model for 4,975,849 bp. Use segment r for 0 bp 2025-01-31 10:01:41,394 DEBUG chr1:136108751-139516751: Successfully fit background model for 3,210,876 bp. Use segment r for 0 bp 2025-01-31 10:01:41,628 DEBUG chr5:145068251-151834684: Successfully fit background model for 6,128,593 bp. Use segment r for 0 bp 2025-01-31 10:01:41,693 DEBUG chr1:139516751-142731251: Successfully fit background model for 2,745,900 bp. Use segment r for 0 bp 2025-01-31 10:01:41,758 DEBUG chrX:133852751-142589751: Successfully fit background model for 7,576,288 bp. Use segment r for 0 bp 2025-01-31 10:01:41,869 DEBUG chr1:142731251-144528251: Successfully fit background model for 1,532,438 bp. Use segment r for 0 bp 2025-01-31 10:01:41,936 DEBUG chr2:157491251-163254751: Successfully fit background model for 5,518,216 bp. Use segment r for 0 bp 2025-01-31 10:01:42,369 DEBUG chr1:144528251-149437751: Successfully fit background model for 4,320,395 bp. Use segment r for 0 bp 2025-01-31 10:01:42,372 DEBUG chr2:163254751-168004251: Successfully fit background model for 4,577,605 bp. Use segment r for 0 bp 2025-01-31 10:01:42,559 DEBUG chrX:142589751-150355751: Successfully fit background model for 4,900,714 bp. Use segment r for 0 bp 2025-01-31 10:01:42,760 DEBUG chrX:150355751-152290751: Successfully fit background model for 1,733,506 bp. Use segment r for 0 bp 2025-01-31 10:01:42,902 DEBUG chr1:149437751-154970751: Successfully fit background model for 5,194,316 bp. Use segment r for 0 bp 2025-01-31 10:01:43,067 DEBUG chr1:154970751-156604751: Successfully fit background model for 1,529,100 bp. Use segment r for 0 bp 2025-01-31 10:01:43,082 DEBUG chr2:168004251-175179501: Successfully fit background model for 6,830,986 bp. Use segment r for 0 bp 2025-01-31 10:01:43,391 DEBUG chr2:176700000-179971751: Successfully fit background model for 2,079,733 bp. Use segment r for 0 bp 2025-01-31 10:01:43,414 DEBUG chrX:152290751-159368751: Successfully fit background model for 6,044,364 bp. Use segment r for 0 bp 2025-01-31 10:01:43,659 DEBUG chr2:179971751-182113224: Successfully fit background model for 1,953,173 bp. Use segment r for 0 bp 2025-01-31 10:01:45,677 DEBUG chr1:156604751-170844251: Successfully fit background model for 13,374,256 bp. Use segment r for 0 bp 2025-01-31 10:01:45,835 DEBUG chr1:170844251-172118251: Successfully fit background model for 1,176,618 bp. Use segment r for 0 bp 2025-01-31 10:01:45,893 DEBUG chrX:159368751-171031299: Successfully fit background model for 9,714,356 bp. Use segment r for 0 bp 2025-01-31 10:01:47,060 DEBUG chr1:172118251-178301751: Successfully fit background model for 5,590,715 bp. Use segment r for 0 bp 2025-01-31 10:01:48,130 DEBUG chr1:178301751-185472751: Successfully fit background model for 6,785,004 bp. Use segment r for 0 bp 2025-01-31 10:01:48,649 DEBUG chr1:185472751-190865751: Successfully fit background model for 5,192,684 bp. Use segment r for 0 bp 2025-01-31 10:01:49,090 DEBUG chr1:190865751-195471971: Successfully fit background model for 4,212,821 bp. Use segment r for 0 bp 2025-01-31 10:03:07,745 DEBUG chr6:3050000-9306751: Successfully fit background model for 5,564,551 bp. Use segment r for 0 bp 2025-01-31 10:03:09,269 DEBUG chr7:3004000-4427251: Successfully fit background model for 1,017,214 bp. Use segment r for 792 bp 2025-01-31 10:03:09,340 DEBUG chr7:4427251-5109751: Successfully fit background model for 639,554 bp. Use segment r for 0 bp 2025-01-31 10:03:09,560 DEBUG chr7:5109751-7300751: Successfully fit background model for 1,775,156 bp. Use segment r for 0 bp 2025-01-31 10:03:09,710 DEBUG chr10:3101500-14840251: Successfully fit background model for 10,683,080 bp. Use segment r for 0 bp 2025-01-31 10:03:09,802 DEBUG chr6:9306751-28287751: Successfully fit background model for 16,805,583 bp. Use segment r for 0 bp 2025-01-31 10:03:09,877 DEBUG chr10:14840251-16459251: Successfully fit background model for 1,396,411 bp. Use segment r for 0 bp 2025-01-31 10:03:10,116 DEBUG chr6:28287751-31508751: Successfully fit background model for 3,088,406 bp. Use segment r for 0 bp 2025-01-31 10:03:10,407 DEBUG chr7:7300751-12880751: Successfully fit background model for 2,148,165 bp. Use segment r for 3,659 bp 2025-01-31 10:03:10,436 DEBUG chr7:12880751-13064751: Successfully fit background model for 176,231 bp. Use segment r for 0 bp 2025-01-31 10:03:10,724 DEBUG chr7:13064751-15944751: Successfully fit background model for 1,793,416 bp. Use segment r for 0 bp 2025-01-31 10:03:10,849 DEBUG chr7:15944751-17215751: Successfully fit background model for 1,206,007 bp. Use segment r for 0 bp 2025-01-31 10:03:11,112 DEBUG chr7:17215751-19002751: Successfully fit background model for 1,281,426 bp. Use segment r for 1,670 bp 2025-01-31 10:03:11,226 DEBUG chr7:19002751-20102001: Successfully fit background model for 1,025,627 bp. Use segment r for 0 bp 2025-01-31 10:03:11,313 DEBUG chr6:31508751-44233751: Successfully fit background model for 11,787,526 bp. Use segment r for 0 bp 2025-01-31 10:03:11,369 DEBUG chr7:22771000-24287751: Successfully fit background model for 837,293 bp. Use segment r for 0 bp 2025-01-31 10:03:11,467 DEBUG chr6:44233751-45763751: Successfully fit background model for 1,385,839 bp. Use segment r for 0 bp 2025-01-31 10:03:11,528 DEBUG chr7:24287751-25949751: Successfully fit background model for 1,559,305 bp. Use segment r for 0 bp 2025-01-31 10:03:11,541 DEBUG chr10:16459251-31964751: Successfully fit background model for 14,174,713 bp. Use segment r for 0 bp 2025-01-31 10:03:11,605 DEBUG chr7:25949751-26729001: Successfully fit background model for 608,183 bp. Use segment r for 0 bp 2025-01-31 10:03:12,023 DEBUG chr7:26729001-31179751: Successfully fit background model for 4,127,761 bp. Use segment r for 0 bp 2025-01-31 10:03:12,260 DEBUG chr7:31179751-33678501: Successfully fit background model for 932,196 bp. Use segment r for 0 bp 2025-01-31 10:03:12,337 DEBUG chr10:31964751-40105751: Successfully fit background model for 7,385,192 bp. Use segment r for 0 bp 2025-01-31 10:03:12,641 DEBUG chr10:40105751-43477751: Successfully fit background model for 3,236,316 bp. Use segment r for 0 bp 2025-01-31 10:03:12,942 DEBUG chr10:43477751-46744751: Successfully fit background model for 3,049,670 bp. Use segment r for 0 bp 2025-01-31 10:03:13,015 DEBUG chr7:33678501-41645751: Successfully fit background model for 6,653,563 bp. Use segment r for 0 bp 2025-01-31 10:03:13,102 DEBUG chr6:45763751-61364001: Successfully fit background model for 14,277,013 bp. Use segment r for 0 bp 2025-01-31 10:03:13,175 DEBUG chr10:46744751-49434001: Successfully fit background model for 2,334,804 bp. Use segment r for 0 bp 2025-01-31 10:03:13,249 DEBUG chr7:41645751-44198251: Successfully fit background model for 2,108,898 bp. Use segment r for 0 bp 2025-01-31 10:03:13,389 DEBUG chr7:44198251-45622751: Successfully fit background model for 1,396,739 bp. Use segment r for 0 bp 2025-01-31 10:03:13,898 DEBUG chr10:49434001-56900751: Successfully fit background model for 6,642,970 bp. Use segment r for 0 bp 2025-01-31 10:03:14,035 DEBUG chr7:45622751-52267751: Successfully fit background model for 5,990,057 bp. Use segment r for 0 bp 2025-01-31 10:03:14,066 DEBUG chr6:61364001-70709501: Successfully fit background model for 8,014,378 bp. Use segment r for 0 bp 2025-01-31 10:03:14,155 DEBUG chr10:56900751-59782251: Successfully fit background model for 2,347,093 bp. Use segment r for 0 bp 2025-01-31 10:03:14,307 DEBUG chr7:52267751-55279751: Successfully fit background model for 2,653,079 bp. Use segment r for 0 bp 2025-01-31 10:03:14,362 DEBUG chr6:70709501-74012251: Successfully fit background model for 3,118,986 bp. Use segment r for 0 bp 2025-01-31 10:03:14,567 DEBUG chr10:59782251-64170251: Successfully fit background model for 4,215,826 bp. Use segment r for 0 bp 2025-01-31 10:03:14,689 DEBUG chr7:55279751-59229751: Successfully fit background model for 3,466,265 bp. Use segment r for 0 bp 2025-01-31 10:03:14,724 DEBUG chr10:64170251-65298501: Successfully fit background model for 976,866 bp. Use segment r for 73,427 bp 2025-01-31 10:03:14,889 DEBUG chr6:74012251-79863751: Successfully fit background model for 5,263,308 bp. Use segment r for 0 bp 2025-01-31 10:03:15,007 DEBUG chr7:59229751-62765251: Successfully fit background model for 2,718,386 bp. Use segment r for 0 bp 2025-01-31 10:03:15,176 DEBUG chr6:79863751-82993251: Successfully fit background model for 2,858,203 bp. Use segment r for 0 bp 2025-01-31 10:03:15,590 DEBUG chr7:62765251-68976251: Successfully fit background model for 5,850,902 bp. Use segment r for 0 bp 2025-01-31 10:03:15,711 DEBUG chr10:65298501-75570751: Successfully fit background model for 9,506,711 bp. Use segment r for 0 bp 2025-01-31 10:03:16,076 DEBUG chr10:75570751-79595251: Successfully fit background model for 3,731,839 bp. Use segment r for 0 bp 2025-01-31 10:03:16,112 DEBUG chr6:82993251-91649751: Successfully fit background model for 8,174,479 bp. Use segment r for 0 bp 2025-01-31 10:03:16,259 DEBUG chr10:79595251-81564251: Successfully fit background model for 1,935,197 bp. Use segment r for 0 bp 2025-01-31 10:03:16,440 DEBUG chr7:68976251-77787251: Successfully fit background model for 8,158,564 bp. Use segment r for 0 bp 2025-01-31 10:03:16,619 DEBUG chr7:77787251-79224751: Successfully fit background model for 1,377,441 bp. Use segment r for 0 bp 2025-01-31 10:03:16,741 DEBUG chr7:79224751-80317751: Successfully fit background model for 1,065,438 bp. Use segment r for 0 bp 2025-01-31 10:03:17,208 DEBUG chr7:80317751-84912251: Successfully fit background model for 4,347,530 bp. Use segment r for 0 bp 2025-01-31 10:03:17,526 DEBUG chr7:84912251-88501251: Successfully fit background model for 3,186,513 bp. Use segment r for 0 bp 2025-01-31 10:03:17,595 DEBUG chr6:91649751-103966251: Successfully fit background model for 11,633,983 bp. Use segment r for 0 bp 2025-01-31 10:03:18,001 DEBUG chr7:88501251-93371751: Successfully fit background model for 4,449,747 bp. Use segment r for 0 bp 2025-01-31 10:03:18,184 DEBUG chr7:93371751-95280751: Successfully fit background model for 1,715,729 bp. Use segment r for 0 bp 2025-01-31 10:03:18,398 DEBUG chr10:81564251-100874751: Successfully fit background model for 17,747,358 bp. Use segment r for 0 bp 2025-01-31 10:03:18,493 DEBUG chr6:103966251-112838751: Successfully fit background model for 8,033,407 bp. Use segment r for 0 bp 2025-01-31 10:03:18,773 DEBUG chr10:100874751-104844751: Successfully fit background model for 3,559,789 bp. Use segment r for 0 bp 2025-01-31 10:03:18,938 DEBUG chr7:95280751-103119751: Successfully fit background model for 7,485,672 bp. Use segment r for 0 bp 2025-01-31 10:03:19,386 DEBUG chr7:103119751-108041251: Successfully fit background model for 3,847,176 bp. Use segment r for 0 bp 2025-01-31 10:03:19,766 DEBUG chr10:104844751-113860751: Successfully fit background model for 8,343,692 bp. Use segment r for 0 bp 2025-01-31 10:03:20,107 DEBUG chr6:112838751-128221251: Successfully fit background model for 14,073,309 bp. Use segment r for 0 bp 2025-01-31 10:03:20,287 DEBUG chr6:128221251-129956751: Successfully fit background model for 1,564,269 bp. Use segment r for 0 bp 2025-01-31 10:03:20,626 DEBUG chr6:129956751-133392251: Successfully fit background model for 2,763,384 bp. Use segment r for 0 bp 2025-01-31 10:03:21,197 DEBUG chr10:113860751-126930751: Successfully fit background model for 12,237,127 bp. Use segment r for 0 bp 2025-01-31 10:03:21,362 DEBUG chr7:108041251-126236751: Successfully fit background model for 17,295,916 bp. Use segment r for 0 bp 2025-01-31 10:03:21,367 DEBUG chr10:126930751-128667751: Successfully fit background model for 1,686,523 bp. Use segment r for 0 bp 2025-01-31 10:03:21,388 DEBUG chr8:3070000-4705251: Successfully fit background model for 1,429,811 bp. Use segment r for 0 bp 2025-01-31 10:03:21,463 DEBUG chr10:128667751-129559001: Successfully fit background model for 760,535 bp. Use segment r for 0 bp 2025-01-31 10:03:21,531 DEBUG chr7:126236751-127797751: Successfully fit background model for 1,510,769 bp. Use segment r for 0 bp 2025-01-31 10:03:21,566 DEBUG chr8:4705251-6506251: Successfully fit background model for 1,574,082 bp. Use segment r for 0 bp 2025-01-31 10:03:21,570 DEBUG chr10:129559001-130694993: Successfully fit background model for 872,500 bp. Use segment r for 0 bp 2025-01-31 10:03:21,866 DEBUG chr8:6506251-9541251: Successfully fit background model for 2,810,694 bp. Use segment r for 0 bp 2025-01-31 10:03:22,378 DEBUG chr6:133392251-149736546: Successfully fit background model for 15,145,513 bp. Use segment r for 0 bp 2025-01-31 10:03:22,759 DEBUG chr7:127797751-140935251: Successfully fit background model for 12,544,459 bp. Use segment r for 0 bp 2025-01-31 10:03:23,181 DEBUG chr7:140935251-145441459: Successfully fit background model for 4,220,656 bp. Use segment r for 0 bp 2025-01-31 10:03:25,450 DEBUG chr8:9541251-29498751: Successfully fit background model for 17,139,426 bp. Use segment r for 30,015 bp 2025-01-31 10:03:25,783 DEBUG chr8:29498751-32556751: Successfully fit background model for 2,784,979 bp. Use segment r for 0 bp 2025-01-31 10:03:26,237 DEBUG chr8:32556751-37136751: Successfully fit background model for 4,307,823 bp. Use segment r for 0 bp 2025-01-31 10:03:26,878 DEBUG chr8:37136751-43596751: Successfully fit background model for 5,726,971 bp. Use segment r for 0 bp 2025-01-31 10:03:27,407 DEBUG chr8:43596751-49171251: Successfully fit background model for 5,221,071 bp. Use segment r for 0 bp 2025-01-31 10:03:27,826 DEBUG chr8:49171251-53280751: Successfully fit background model for 3,734,206 bp. Use segment r for 0 bp 2025-01-31 10:03:28,316 DEBUG chr14:3006500-5126501: Successfully fit background model for 74,771 bp. Use segment r for 0 bp 2025-01-31 10:03:28,530 DEBUG chr8:53280751-60941751: Successfully fit background model for 6,520,878 bp. Use segment r for 0 bp 2025-01-31 10:03:28,643 DEBUG chr8:60941751-62003751: Successfully fit background model for 1,016,121 bp. Use segment r for 0 bp 2025-01-31 10:03:29,008 DEBUG chr8:62003751-66009751: Successfully fit background model for 3,546,652 bp. Use segment r for 0 bp 2025-01-31 10:03:29,368 DEBUG chr8:66009751-69995251: Successfully fit background model for 3,535,393 bp. Use segment r for 0 bp 2025-01-31 10:03:29,590 DEBUG chr8:69995251-72411251: Successfully fit background model for 2,157,187 bp. Use segment r for 0 bp 2025-01-31 10:03:29,926 DEBUG chr14:5838000-20022251: Successfully fit background model for 11,255,898 bp. Use segment r for 0 bp 2025-01-31 10:03:30,859 DEBUG chr8:72411251-83566251: Successfully fit background model for 10,129,546 bp. Use segment r for 0 bp 2025-01-31 10:03:31,003 DEBUG chr8:83566251-84901751: Successfully fit background model for 1,311,676 bp. Use segment r for 0 bp 2025-01-31 10:03:31,554 DEBUG chr14:20022251-34499751: Successfully fit background model for 13,503,927 bp. Use segment r for 0 bp 2025-01-31 10:03:32,072 DEBUG chr8:84901751-94325751: Successfully fit background model for 9,011,146 bp. Use segment r for 0 bp 2025-01-31 10:03:32,278 DEBUG chr8:94325751-96423251: Successfully fit background model for 1,980,520 bp. Use segment r for 0 bp 2025-01-31 10:03:32,856 DEBUG chr8:96423251-102373251: Successfully fit background model for 5,421,037 bp. Use segment r for 0 bp 2025-01-31 10:03:33,552 DEBUG chr14:34499751-51838251: Successfully fit background model for 13,266,262 bp. Use segment r for 0 bp 2025-01-31 10:03:35,336 DEBUG chr14:51838251-65261751: Successfully fit background model for 12,028,958 bp. Use segment r for 0 bp 2025-01-31 10:03:35,589 DEBUG chr8:102373251-116863251: Successfully fit background model for 13,614,261 bp. Use segment r for 284,534 bp 2025-01-31 10:03:35,847 DEBUG chr8:116863251-119424751: Successfully fit background model for 2,487,117 bp. Use segment r for 0 bp 2025-01-31 10:03:36,341 DEBUG chr8:119424751-124358251: Successfully fit background model for 4,717,417 bp. Use segment r for 0 bp 2025-01-31 10:03:37,120 DEBUG chr14:65261751-80787751: Successfully fit background model for 14,237,193 bp. Use segment r for 0 bp 2025-01-31 10:03:37,223 DEBUG chr8:124358251-129401213: Successfully fit background model for 4,675,916 bp. Use segment r for 0 bp 2025-01-31 10:03:37,896 DEBUG chr14:80787751-85688001: Successfully fit background model for 4,383,905 bp. Use segment r for 0 bp 2025-01-31 10:03:38,275 DEBUG chr14:85688001-88576251: Successfully fit background model for 2,612,404 bp. Use segment r for 0 bp 2025-01-31 10:03:39,315 DEBUG chr14:88576251-98143751: Successfully fit background model for 8,720,372 bp. Use segment r for 0 bp 2025-01-31 10:03:40,217 DEBUG chr14:98143751-106658251: Successfully fit background model for 7,826,876 bp. Use segment r for 0 bp 2025-01-31 10:03:40,981 DEBUG chr14:106658251-114104251: Successfully fit background model for 6,712,583 bp. Use segment r for 0 bp 2025-01-31 10:03:42,047 DEBUG chr14:114104251-124902244: Successfully fit background model for 9,784,335 bp. Use segment r for 0 bp 2025-01-31 10:03:44,538 DEBUG chr9:3002500-13822251: Successfully fit background model for 9,432,753 bp. Use segment r for 0 bp 2025-01-31 10:03:44,702 DEBUG chr9:13822251-15345751: Successfully fit background model for 1,447,256 bp. Use segment r for 0 bp 2025-01-31 10:03:45,224 DEBUG chr9:15345751-20598751: Successfully fit background model for 4,638,807 bp. Use segment r for 0 bp 2025-01-31 10:03:45,365 DEBUG chr9:20598751-22011751: Successfully fit background model for 1,362,681 bp. Use segment r for 0 bp 2025-01-31 10:03:47,229 DEBUG chr9:22011751-37973251: Successfully fit background model for 14,900,606 bp. Use segment r for 0 bp 2025-01-31 10:03:47,418 DEBUG chr9:37973251-39864751: Successfully fit background model for 1,693,063 bp. Use segment r for 0 bp 2025-01-31 10:03:49,317 DEBUG chr9:39864751-57070251: Successfully fit background model for 16,491,103 bp. Use segment r for 0 bp 2025-01-31 10:03:50,428 DEBUG chr9:57070251-66832751: Successfully fit background model for 9,500,897 bp. Use segment r for 0 bp 2025-01-31 10:03:51,875 DEBUG chr9:66832751-78974751: Successfully fit background model for 11,464,587 bp. Use segment r for 0 bp 2025-01-31 10:03:53,616 DEBUG chr9:78974751-93734751: Successfully fit background model for 12,948,885 bp. Use segment r for 0 bp 2025-01-31 10:03:55,166 DEBUG chr9:93734751-106136251: Successfully fit background model for 11,815,572 bp. Use segment r for 0 bp 2025-01-31 10:03:55,718 DEBUG chr9:106136251-110615251: Successfully fit background model for 4,126,210 bp. Use segment r for 0 bp 2025-01-31 10:03:58,062 DEBUG chr9:110615251-119318251: Successfully fit background model for 8,226,313 bp. Use segment r for 0 bp 2025-01-31 10:03:59,764 DEBUG chr9:119318251-124595110: Successfully fit background model for 4,734,153 bp. Use segment r for 0 bp 2025-01-31 10:04:28,883 DEBUG chr11:3100500-3203251: Successfully fit background model for 75,714 bp. Use segment r for 0 bp 2025-01-31 10:04:29,233 DEBUG chr11:3203251-6865501: Successfully fit background model for 3,498,720 bp. Use segment r for 0 bp 2025-01-31 10:04:29,764 DEBUG chr11:6865501-12684251: Successfully fit background model for 5,239,529 bp. Use segment r for 0 bp 2025-01-31 10:04:30,048 DEBUG chr11:12684251-16031501: Successfully fit background model for 2,954,733 bp. Use segment r for 0 bp 2025-01-31 10:04:30,293 DEBUG chr11:16031501-18602251: Successfully fit background model for 2,332,320 bp. Use segment r for 0 bp 2025-01-31 10:04:30,895 DEBUG chr11:18602251-24808751: Successfully fit background model for 5,847,408 bp. Use segment r for 0 bp 2025-01-31 10:04:31,238 DEBUG chr11:24808751-28627251: Successfully fit background model for 3,398,247 bp. Use segment r for 0 bp 2025-01-31 10:04:32,004 DEBUG chr11:28627251-36543501: Successfully fit background model for 7,369,826 bp. Use segment r for 0 bp 2025-01-31 10:04:32,540 DEBUG chr11:36543501-42568751: Successfully fit background model for 5,584,922 bp. Use segment r for 0 bp 2025-01-31 10:04:33,119 DEBUG chr11:42568751-48760251: Successfully fit background model for 5,745,670 bp. Use segment r for 0 bp 2025-01-31 10:04:35,395 DEBUG chr11:48760251-68959251: Successfully fit background model for 19,179,593 bp. Use segment r for 0 bp 2025-01-31 10:04:35,581 DEBUG chr11:68959251-70597751: Successfully fit background model for 1,599,998 bp. Use segment r for 0 bp 2025-01-31 10:04:36,004 DEBUG chr11:70597751-74825251: Successfully fit background model for 3,889,730 bp. Use segment r for 0 bp 2025-01-31 10:04:36,306 DEBUG chr11:74825251-78065251: Successfully fit background model for 3,136,914 bp. Use segment r for 0 bp 2025-01-31 10:04:37,797 DEBUG chr11:78065251-90905001: Successfully fit background model for 12,359,779 bp. Use segment r for 0 bp 2025-01-31 10:04:38,017 DEBUG chr11:90905001-93078251: Successfully fit background model for 1,999,724 bp. Use segment r for 0 bp 2025-01-31 10:04:38,385 DEBUG chr11:93078251-96766751: Successfully fit background model for 3,574,816 bp. Use segment r for 0 bp 2025-01-31 10:04:39,004 DEBUG chr11:96766751-103016751: Successfully fit background model for 6,070,563 bp. Use segment r for 0 bp 2025-01-31 10:04:39,804 DEBUG chr11:103016751-110783751: Successfully fit background model for 7,455,858 bp. Use segment r for 0 bp 2025-01-31 10:04:39,952 DEBUG chr11:110783751-112080751: Successfully fit background model for 1,234,059 bp. Use segment r for 0 bp 2025-01-31 10:04:40,295 DEBUG chr11:112080751-115152251: Successfully fit background model for 2,967,177 bp. Use segment r for 0 bp 2025-01-31 10:04:40,347 DEBUG chr13:3000500-4682751: Successfully fit background model for 1,426,785 bp. Use segment r for 0 bp 2025-01-31 10:04:40,763 DEBUG chr13:4682751-8527251: Successfully fit background model for 3,402,259 bp. Use segment r for 0 bp 2025-01-31 10:04:41,049 DEBUG chr11:115152251-122082543: Successfully fit background model for 6,614,705 bp. Use segment r for 0 bp 2025-01-31 10:04:42,358 DEBUG chr13:8527251-21159001: Successfully fit background model for 11,096,388 bp. Use segment r for 0 bp 2025-01-31 10:04:42,472 DEBUG chr13:21159001-22055751: Successfully fit background model for 803,533 bp. Use segment r for 0 bp 2025-01-31 10:04:42,632 DEBUG chr13:22055751-23368251: Successfully fit background model for 997,215 bp. Use segment r for 0 bp 2025-01-31 10:04:42,680 DEBUG chr13:23368251-23773751: Successfully fit background model for 379,078 bp. Use segment r for 0 bp 2025-01-31 10:04:42,912 DEBUG chr13:23773751-25972251: Successfully fit background model for 2,064,836 bp. Use segment r for 0 bp 2025-01-31 10:04:43,108 DEBUG chr13:25972251-27706751: Successfully fit background model for 1,546,983 bp. Use segment r for 0 bp 2025-01-31 10:04:46,519 DEBUG chr13:27706751-54551751: Successfully fit background model for 24,908,169 bp. Use segment r for 0 bp 2025-01-31 10:04:46,544 DEBUG chr12:3000500-33144751: Successfully fit background model for 24,063,061 bp. Use segment r for 0 bp 2025-01-31 10:04:47,267 DEBUG chr13:54551751-61027251: Successfully fit background model for 6,225,342 bp. Use segment r for 0 bp 2025-01-31 10:04:47,433 DEBUG chr13:61027251-62009501: Successfully fit background model for 730,123 bp. Use segment r for 44,260 bp 2025-01-31 10:04:47,462 DEBUG chr15:3050500-5088251: Successfully fit background model for 1,734,531 bp. Use segment r for 0 bp 2025-01-31 10:04:47,574 DEBUG chr16:3016500-6199251: Successfully fit background model for 2,652,661 bp. Use segment r for 0 bp 2025-01-31 10:04:48,422 DEBUG chr15:5088251-13602751: Successfully fit background model for 7,851,557 bp. Use segment r for 0 bp 2025-01-31 10:04:48,805 DEBUG chr13:62009501-73177751: Successfully fit background model for 8,763,193 bp. Use segment r for 0 bp 2025-01-31 10:04:48,842 DEBUG chr16:6199251-17043751: Successfully fit background model for 10,067,850 bp. Use segment r for 0 bp 2025-01-31 10:04:48,903 DEBUG chr13:73177751-73936751: Successfully fit background model for 745,527 bp. Use segment r for 0 bp 2025-01-31 10:04:48,996 DEBUG chr16:17043751-18390251: Successfully fit background model for 1,299,276 bp. Use segment r for 0 bp 2025-01-31 10:04:49,187 DEBUG chr13:73936751-76616001: Successfully fit background model for 2,413,095 bp. Use segment r for 0 bp 2025-01-31 10:04:49,319 DEBUG chr12:33144751-48749751: Successfully fit background model for 14,061,775 bp. Use segment r for 132,456 bp 2025-01-31 10:04:49,769 DEBUG chr15:13602751-25817251: Successfully fit background model for 10,913,909 bp. Use segment r for 0 bp 2025-01-31 10:04:49,970 DEBUG chr15:25817251-27787751: Successfully fit background model for 1,838,493 bp. Use segment r for 0 bp 2025-01-31 10:04:50,267 DEBUG chr13:76616001-85623751: Successfully fit background model for 8,143,105 bp. Use segment r for 0 bp 2025-01-31 10:04:50,284 DEBUG chr15:27787751-30986751: Successfully fit background model for 2,920,352 bp. Use segment r for 0 bp 2025-01-31 10:04:50,546 DEBUG chr12:48749751-60180251: Successfully fit background model for 10,269,746 bp. Use segment r for 0 bp 2025-01-31 10:04:50,612 DEBUG chr13:85623751-88983751: Successfully fit background model for 2,921,446 bp. Use segment r for 0 bp 2025-01-31 10:04:50,837 DEBUG chr15:30986751-36114251: Successfully fit background model for 4,605,866 bp. Use segment r for 0 bp 2025-01-31 10:04:50,897 DEBUG chr12:60180251-63514751: Successfully fit background model for 2,928,391 bp. Use segment r for 0 bp 2025-01-31 10:04:50,935 DEBUG chr15:36114251-36918251: Successfully fit background model for 768,723 bp. Use segment r for 0 bp 2025-01-31 10:04:51,378 DEBUG chr16:18390251-39643251: Successfully fit background model for 19,996,013 bp. Use segment r for 0 bp 2025-01-31 10:04:51,478 DEBUG chr12:63514751-69129751: Successfully fit background model for 5,048,913 bp. Use segment r for 0 bp 2025-01-31 10:04:51,822 DEBUG chr15:36918251-45010751: Successfully fit background model for 7,342,600 bp. Use segment r for 0 bp 2025-01-31 10:04:52,146 DEBUG chr15:45010751-48284751: Successfully fit background model for 2,946,439 bp. Use segment r for 0 bp 2025-01-31 10:04:53,065 DEBUG chr12:69129751-79956251: Successfully fit background model for 10,271,729 bp. Use segment r for 0 bp 2025-01-31 10:04:53,128 DEBUG chr16:39643251-52597751: Successfully fit background model for 11,866,821 bp. Use segment r for 0 bp 2025-01-31 10:04:53,361 DEBUG chr16:52597751-54805751: Successfully fit background model for 1,977,336 bp. Use segment r for 0 bp 2025-01-31 10:04:53,581 DEBUG chr15:48284751-57569251: Successfully fit background model for 8,435,159 bp. Use segment r for 0 bp 2025-01-31 10:04:53,740 DEBUG chr12:79956251-86986251: Successfully fit background model for 6,729,945 bp. Use segment r for 0 bp 2025-01-31 10:04:53,780 DEBUG chr16:54805751-58942251: Successfully fit background model for 3,696,470 bp. Use segment r for 0 bp 2025-01-31 10:04:53,872 DEBUG chr15:57569251-58842251: Successfully fit background model for 1,235,731 bp. Use segment r for 0 bp 2025-01-31 10:04:54,255 DEBUG chr12:86986251-92348751: Successfully fit background model for 4,600,739 bp. Use segment r for 0 bp 2025-01-31 10:04:54,335 DEBUG chr16:58942251-64017251: Successfully fit background model for 4,497,501 bp. Use segment r for 0 bp 2025-01-31 10:04:54,402 DEBUG chr13:88983751-115376751: Successfully fit background model for 24,724,528 bp. Use segment r for 0 bp 2025-01-31 10:04:54,794 DEBUG chr12:92348751-97346751: Successfully fit background model for 4,497,312 bp. Use segment r for 0 bp 2025-01-31 10:04:55,158 DEBUG chr13:115376751-120421639: Successfully fit background model for 4,103,011 bp. Use segment r for 0 bp 2025-01-31 10:04:55,948 DEBUG chr15:58842251-69382751: Successfully fit background model for 9,649,775 bp. Use segment r for 0 bp 2025-01-31 10:04:56,226 DEBUG chr12:97346751-110428251: Successfully fit background model for 12,390,578 bp. Use segment r for 0 bp 2025-01-31 10:04:56,487 DEBUG chr12:110428251-113092251: Successfully fit background model for 2,592,399 bp. Use segment r for 0 bp 2025-01-31 10:04:56,558 DEBUG chr15:69382751-72902751: Successfully fit background model for 3,256,976 bp. Use segment r for 0 bp 2025-01-31 10:04:56,939 DEBUG chr15:72902751-75803251: Successfully fit background model for 2,723,258 bp. Use segment r for 0 bp 2025-01-31 10:04:56,998 DEBUG chr16:64017251-87330751: Successfully fit background model for 21,196,930 bp. Use segment r for 0 bp 2025-01-31 10:04:57,129 DEBUG chr12:113092251-120129022: Successfully fit background model for 6,100,994 bp. Use segment r for 0 bp 2025-01-31 10:04:57,283 DEBUG chr16:87330751-90069751: Successfully fit background model for 2,558,804 bp. Use segment r for 0 bp 2025-01-31 10:04:57,709 DEBUG chr16:90069751-94341251: Successfully fit background model for 4,147,866 bp. Use segment r for 0 bp 2025-01-31 10:04:57,751 DEBUG chr15:75803251-82377751: Successfully fit background model for 6,288,328 bp. Use segment r for 0 bp 2025-01-31 10:04:58,069 DEBUG chr16:94341251-98207768: Successfully fit background model for 3,605,340 bp. Use segment r for 0 bp 2025-01-31 10:04:58,078 DEBUG chr15:82377751-85840751: Successfully fit background model for 3,302,441 bp. Use segment r for 0 bp 2025-01-31 10:04:59,513 DEBUG chr15:85840751-98507251: Successfully fit background model for 12,049,367 bp. Use segment r for 0 bp 2025-01-31 10:05:00,026 DEBUG chr15:98507251-104043685: Successfully fit background model for 5,136,264 bp. Use segment r for 0 bp 2025-01-31 10:05:04,665 DEBUG chr17:3000000-15977251: Successfully fit background model for 10,945,861 bp. Use segment r for 0 bp 2025-01-31 10:05:05,138 DEBUG chr17:15977251-20505751: Successfully fit background model for 3,894,568 bp. Use segment r for 0 bp 2025-01-31 10:05:05,443 DEBUG chr17:20505751-23534751: Successfully fit background model for 2,324,045 bp. Use segment r for 0 bp 2025-01-31 10:05:07,092 DEBUG chr17:23534751-35814751: Successfully fit background model for 11,638,984 bp. Use segment r for 0 bp 2025-01-31 10:05:07,372 DEBUG chr17:35814751-38083251: Successfully fit background model for 1,974,850 bp. Use segment r for 0 bp 2025-01-31 10:05:07,818 DEBUG chr17:38083251-41962751: Successfully fit background model for 3,255,060 bp. Use segment r for 0 bp 2025-01-31 10:05:08,422 DEBUG chr17:41962751-45431751: Successfully fit background model for 3,279,943 bp. Use segment r for 0 bp 2025-01-31 10:05:08,869 DEBUG chr17:45431751-47880751: Successfully fit background model for 2,391,519 bp. Use segment r for 0 bp 2025-01-31 10:05:10,287 DEBUG chr17:47880751-54371501: Successfully fit background model for 6,023,983 bp. Use segment r for 0 bp 2025-01-31 10:05:10,596 DEBUG chr17:54371501-55929751: Successfully fit background model for 1,343,437 bp. Use segment r for 0 bp 2025-01-31 10:05:10,935 DEBUG chr17:55929751-57714501: Successfully fit background model for 1,674,831 bp. Use segment r for 0 bp 2025-01-31 10:05:11,583 DEBUG chr17:57714501-61146251: Successfully fit background model for 3,090,054 bp. Use segment r for 0 bp 2025-01-31 10:05:15,264 DEBUG chr17:61146251-76013251: Successfully fit background model for 13,951,091 bp. Use segment r for 0 bp 2025-01-31 10:05:15,576 DEBUG chr17:76013251-77382251: Successfully fit background model for 1,250,512 bp. Use segment r for 0 bp 2025-01-31 10:05:16,841 DEBUG chr17:77382251-89293751: Successfully fit background model for 11,305,985 bp. Use segment r for 0 bp 2025-01-31 10:05:17,363 DEBUG chr17:89293751-94987271: Successfully fit background model for 5,059,173 bp. Use segment r for 0 bp 2025-01-31 10:05:46,545 DEBUG chr18:3000500-16908751: Successfully fit background model for 12,651,082 bp. Use segment r for 0 bp 2025-01-31 10:05:46,770 DEBUG chr18:16908751-19039001: Successfully fit background model for 1,880,593 bp. Use segment r for 0 bp 2025-01-31 10:05:47,532 DEBUG chr18:19039001-26713251: Successfully fit background model for 7,083,106 bp. Use segment r for 0 bp 2025-01-31 10:05:48,000 DEBUG chr18:26713251-31750251: Successfully fit background model for 4,637,810 bp. Use segment r for 0 bp 2025-01-31 10:05:48,630 DEBUG chr18:31750251-38294251: Successfully fit background model for 6,159,669 bp. Use segment r for 0 bp 2025-01-31 10:05:50,839 DEBUG chr19:3080000-11002251: Successfully fit background model for 7,019,249 bp. Use segment r for 0 bp 2025-01-31 10:05:51,233 DEBUG chr18:38294251-60456751: Successfully fit background model for 20,536,545 bp. Use segment r for 0 bp 2025-01-31 10:05:51,244 DEBUG chr19:11002251-15534251: Successfully fit background model for 4,104,758 bp. Use segment r for 0 bp 2025-01-31 10:05:51,375 DEBUG chr18:60456751-61608251: Successfully fit background model for 1,128,191 bp. Use segment r for 0 bp 2025-01-31 10:05:51,440 DEBUG chr19:15534251-17619251: Successfully fit background model for 2,002,442 bp. Use segment r for 0 bp 2025-01-31 10:05:51,653 DEBUG chr19:17619251-19934251: Successfully fit background model for 2,147,337 bp. Use segment r for 0 bp 2025-01-31 10:05:53,094 DEBUG chr19:19934251-33332751: Successfully fit background model for 12,737,571 bp. Use segment r for 0 bp 2025-01-31 10:05:53,331 DEBUG chr19:33332751-35615251: Successfully fit background model for 1,999,521 bp. Use segment r for 0 bp 2025-01-31 10:05:53,956 DEBUG chr19:35615251-41646251: Successfully fit background model for 5,534,985 bp. Use segment r for 0 bp 2025-01-31 10:05:54,445 DEBUG chr19:41646251-46301751: Successfully fit background model for 4,495,522 bp. Use segment r for 0 bp 2025-01-31 10:05:54,495 DEBUG chr18:61608251-87193251: Successfully fit background model for 24,007,448 bp. Use segment r for 0 bp 2025-01-31 10:05:54,745 DEBUG chr19:46301751-49280751: Successfully fit background model for 2,865,231 bp. Use segment r for 0 bp 2025-01-31 10:05:54,897 DEBUG chr18:87193251-90702639: Successfully fit background model for 2,895,741 bp. Use segment r for 0 bp 2025-01-31 10:05:55,048 DEBUG chr19:49280751-52298751: Successfully fit background model for 2,782,084 bp. Use segment r for 0 bp 2025-01-31 10:05:56,077 DEBUG chr19:52298751-61431566: Successfully fit background model for 8,658,037 bp. Use segment r for 0 bp 2025-01-31 10:06:56,806 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:06:56,807 INFO Calculating per-bp p-values 2025-01-31 10:06:56,808 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:06:56,868 DEBUG chr1: Calculating p-values 2025-01-31 10:06:56,871 DEBUG chr2: Calculating p-values 2025-01-31 10:06:56,872 DEBUG chr4: Calculating p-values 2025-01-31 10:06:56,874 DEBUG chrX: Calculating p-values 2025-01-31 10:06:56,874 DEBUG chr3: Calculating p-values 2025-01-31 10:06:56,876 DEBUG chr5: Calculating p-values 2025-01-31 10:07:49,552 DEBUG Saving p-values for chrX 2025-01-31 10:07:59,828 DEBUG Saving p-values for chr3 2025-01-31 10:08:01,784 DEBUG Saving p-values for chr5 2025-01-31 10:08:02,395 DEBUG Saving p-values for chr4 2025-01-31 10:08:15,205 DEBUG Saving p-values for chr2 2025-01-31 10:08:23,448 DEBUG chr6: Calculating p-values 2025-01-31 10:08:29,684 DEBUG chr7: Calculating p-values 2025-01-31 10:08:33,214 DEBUG Saving p-values for chr1 2025-01-31 10:08:34,014 DEBUG chr10: Calculating p-values 2025-01-31 10:08:34,884 DEBUG chr8: Calculating p-values 2025-01-31 10:08:54,235 DEBUG chr14: Calculating p-values 2025-01-31 10:09:13,920 DEBUG chr9: Calculating p-values 2025-01-31 10:09:16,798 DEBUG Saving p-values for chr6 2025-01-31 10:09:21,037 DEBUG Saving p-values for chr10 2025-01-31 10:09:25,137 DEBUG Saving p-values for chr8 2025-01-31 10:09:26,052 DEBUG Saving p-values for chr7 2025-01-31 10:09:35,254 DEBUG Saving p-values for chr14 2025-01-31 10:09:43,144 DEBUG chr11: Calculating p-values 2025-01-31 10:09:44,476 DEBUG chr13: Calculating p-values 2025-01-31 10:09:48,189 DEBUG chr12: Calculating p-values 2025-01-31 10:09:53,096 DEBUG chr15: Calculating p-values 2025-01-31 10:10:01,374 DEBUG chr16: Calculating p-values 2025-01-31 10:10:09,690 DEBUG Saving p-values for chr9 2025-01-31 10:10:28,760 DEBUG Saving p-values for chr12 2025-01-31 10:10:32,596 DEBUG chr17: Calculating p-values 2025-01-31 10:10:38,057 DEBUG Saving p-values for chr16 2025-01-31 10:10:40,837 DEBUG Saving p-values for chr11 2025-01-31 10:10:41,975 DEBUG Saving p-values for chr13 2025-01-31 10:10:49,058 DEBUG Saving p-values for chr15 2025-01-31 10:10:50,596 DEBUG chrY: Calculating p-values 2025-01-31 10:10:53,194 DEBUG chr18: Calculating p-values 2025-01-31 10:10:56,881 DEBUG chr19: Calculating p-values 2025-01-31 10:11:17,902 DEBUG Saving p-values for chr17 2025-01-31 10:11:21,715 DEBUG Saving p-values for chr19 2025-01-31 10:11:23,117 DEBUG Saving p-values for chr18 2025-01-31 10:11:47,580 DEBUG Results of calc_pvals emitted. 2025-01-31 10:11:47,580 INFO Converting threshold values to bigwig 2025-01-31 10:11:47,580 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:12:04,245 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:12:34,793 INFO Converting background quantile values to bigwig 2025-01-31 10:12:34,794 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:13:21,085 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:13:49,277 INFO Calculating per-bp FDRs 2025-01-31 10:13:49,280 DEBUG AG81965: Extracting raw P-values 2025-01-31 10:14:25,837 DEBUG AG81965: Computing FDR 2025-01-31 10:14:42,286 DEBUG AG81965: Saving FDRs to parquet 2025-01-31 10:15:26,784 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:15:26,787 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:15:26,787 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:15:30,344 DEBUG chr4: Calling hotspots 2025-01-31 10:15:30,560 DEBUG chr5: Calling hotspots 2025-01-31 10:15:30,717 DEBUG chr3: Calling hotspots 2025-01-31 10:15:30,840 DEBUG chrX: Calling hotspots 2025-01-31 10:15:31,242 DEBUG chr2: Calling hotspots 2025-01-31 10:15:31,405 DEBUG chr1: Calling hotspots 2025-01-31 10:15:34,088 DEBUG chr5: 2215 hotspots called 2025-01-31 10:15:34,324 DEBUG chr4: 2212 hotspots called 2025-01-31 10:15:34,658 DEBUG chr3: 1904 hotspots called 2025-01-31 10:15:35,240 DEBUG chrX: 1528 hotspots called 2025-01-31 10:15:35,889 DEBUG chr2: 2928 hotspots called 2025-01-31 10:15:36,568 DEBUG chr1: 2396 hotspots called 2025-01-31 10:15:37,186 DEBUG chr7: Calling hotspots 2025-01-31 10:15:37,232 DEBUG chr10: Calling hotspots 2025-01-31 10:15:37,281 DEBUG chr6: Calling hotspots 2025-01-31 10:15:37,860 DEBUG chr8: Calling hotspots 2025-01-31 10:15:38,237 DEBUG chr14: Calling hotspots 2025-01-31 10:15:38,613 DEBUG chr9: Calling hotspots 2025-01-31 10:15:40,200 DEBUG chr10: 1750 hotspots called 2025-01-31 10:15:41,030 DEBUG chr8: 1841 hotspots called 2025-01-31 10:15:41,088 DEBUG chr7: 2260 hotspots called 2025-01-31 10:15:41,167 DEBUG chr14: 1319 hotspots called 2025-01-31 10:15:41,539 DEBUG chr6: 1902 hotspots called 2025-01-31 10:15:41,926 DEBUG chr9: 2029 hotspots called 2025-01-31 10:15:42,410 DEBUG chr11: Calling hotspots 2025-01-31 10:15:43,287 DEBUG chr15: Calling hotspots 2025-01-31 10:15:43,421 DEBUG chr13: Calling hotspots 2025-01-31 10:15:43,425 DEBUG chr12: Calling hotspots 2025-01-31 10:15:43,477 DEBUG chr16: Calling hotspots 2025-01-31 10:15:43,925 DEBUG chr17: Calling hotspots 2025-01-31 10:15:45,427 DEBUG chr11: 2625 hotspots called 2025-01-31 10:15:46,150 DEBUG chr15: 1574 hotspots called 2025-01-31 10:15:46,309 DEBUG chr16: 1236 hotspots called 2025-01-31 10:15:46,455 DEBUG chr13: 1754 hotspots called 2025-01-31 10:15:46,459 DEBUG chr12: 1493 hotspots called 2025-01-31 10:15:46,715 DEBUG chr17: 1481 hotspots called 2025-01-31 10:15:47,004 DEBUG chr18: Calling hotspots 2025-01-31 10:15:47,013 DEBUG chr19: Calling hotspots 2025-01-31 10:15:48,468 DEBUG chr19: 1156 hotspots called 2025-01-31 10:15:49,055 DEBUG chr18: 1115 hotspots called 2025-01-31 10:15:49,268 DEBUG Results of call_hotspots emitted. 2025-01-31 10:15:49,297 INFO There are 36718 hotspots called at FDR=0.05 2025-01-31 10:15:51,053 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:15:51,054 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:15:59,582 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:16:01,013 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:16:01,031 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:16:01,130 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:16:01,513 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:16:01,880 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:16:04,336 DEBUG chr5: 2457 peaks called 2025-01-31 10:16:05,664 DEBUG chr4: 2437 peaks called 2025-01-31 10:16:05,912 DEBUG chr3: 2152 peaks called 2025-01-31 10:16:06,943 DEBUG chrX: 1579 peaks called 2025-01-31 10:16:07,022 DEBUG chr2: 3216 peaks called 2025-01-31 10:16:07,950 DEBUG chr1: 2658 peaks called 2025-01-31 10:16:12,219 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:16:13,167 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:16:13,240 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:16:13,492 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:16:13,687 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:16:14,818 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:16:16,324 DEBUG chr6: 2045 peaks called 2025-01-31 10:16:16,830 DEBUG chr10: 1938 peaks called 2025-01-31 10:16:16,956 DEBUG chr14: 1432 peaks called 2025-01-31 10:16:17,759 DEBUG chr7: 2597 peaks called 2025-01-31 10:16:17,852 DEBUG chr8: 2040 peaks called 2025-01-31 10:16:18,227 DEBUG chr9: 2231 peaks called 2025-01-31 10:16:22,046 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:16:22,524 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:16:23,147 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:16:23,206 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:16:23,272 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:16:23,323 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:16:25,756 DEBUG chr11: 2982 peaks called 2025-01-31 10:16:26,181 DEBUG chr13: 1961 peaks called 2025-01-31 10:16:26,213 DEBUG chr17: 1708 peaks called 2025-01-31 10:16:26,358 DEBUG chr16: 1363 peaks called 2025-01-31 10:16:26,686 DEBUG chr15: 1736 peaks called 2025-01-31 10:16:27,081 DEBUG chr12: 1620 peaks called 2025-01-31 10:16:28,134 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:16:28,553 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:16:29,878 DEBUG chr19: 1290 peaks called 2025-01-31 10:16:31,021 DEBUG chr18: 1195 peaks called 2025-01-31 10:16:31,310 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:16:31,340 INFO There are 40637 peaks called at FDR=0.05 2025-01-31 10:16:32,123 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:16:32,124 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:16:35,769 DEBUG chr4: Calling hotspots 2025-01-31 10:16:35,769 DEBUG chr3: Calling hotspots 2025-01-31 10:16:35,785 DEBUG chr5: Calling hotspots 2025-01-31 10:16:36,126 DEBUG chrX: Calling hotspots 2025-01-31 10:16:36,338 DEBUG chr2: Calling hotspots 2025-01-31 10:16:36,495 DEBUG chr1: Calling hotspots 2025-01-31 10:16:39,294 DEBUG chr3: 1519 hotspots called 2025-01-31 10:16:39,375 DEBUG chr5: 1836 hotspots called 2025-01-31 10:16:39,401 DEBUG chr4: 1850 hotspots called 2025-01-31 10:16:40,037 DEBUG chrX: 960 hotspots called 2025-01-31 10:16:40,414 DEBUG chr2: 2357 hotspots called 2025-01-31 10:16:40,847 DEBUG chr1: 1873 hotspots called 2025-01-31 10:16:41,794 DEBUG chr10: Calling hotspots 2025-01-31 10:16:41,839 DEBUG chr7: Calling hotspots 2025-01-31 10:16:41,945 DEBUG chr6: Calling hotspots 2025-01-31 10:16:42,331 DEBUG chr8: Calling hotspots 2025-01-31 10:16:42,663 DEBUG chr14: Calling hotspots 2025-01-31 10:16:42,927 DEBUG chr9: Calling hotspots 2025-01-31 10:16:44,917 DEBUG chr10: 1384 hotspots called 2025-01-31 10:16:45,304 DEBUG chr6: 1457 hotspots called 2025-01-31 10:16:45,359 DEBUG chr8: 1481 hotspots called 2025-01-31 10:16:45,384 DEBUG chr7: 1919 hotspots called 2025-01-31 10:16:45,441 DEBUG chr14: 977 hotspots called 2025-01-31 10:16:46,244 DEBUG chr9: 1632 hotspots called 2025-01-31 10:16:47,275 DEBUG chr11: Calling hotspots 2025-01-31 10:16:47,477 DEBUG chr16: Calling hotspots 2025-01-31 10:16:47,536 DEBUG chr15: Calling hotspots 2025-01-31 10:16:47,589 DEBUG chr13: Calling hotspots 2025-01-31 10:16:47,782 DEBUG chr12: Calling hotspots 2025-01-31 10:16:48,140 DEBUG chr17: Calling hotspots 2025-01-31 10:16:49,771 DEBUG chr16: 968 hotspots called 2025-01-31 10:16:49,957 DEBUG chr15: 1303 hotspots called 2025-01-31 10:16:50,015 DEBUG chr11: 2263 hotspots called 2025-01-31 10:16:50,213 DEBUG chr13: 1435 hotspots called 2025-01-31 10:16:50,277 DEBUG chr17: 1267 hotspots called 2025-01-31 10:16:50,473 DEBUG chr12: 1128 hotspots called 2025-01-31 10:16:50,797 DEBUG chr19: Calling hotspots 2025-01-31 10:16:50,968 DEBUG chr18: Calling hotspots 2025-01-31 10:16:52,259 DEBUG chr19: 961 hotspots called 2025-01-31 10:16:53,090 DEBUG chr18: 808 hotspots called 2025-01-31 10:16:53,304 DEBUG Results of call_hotspots emitted. 2025-01-31 10:16:53,332 INFO There are 29378 hotspots called at FDR=0.01 2025-01-31 10:16:54,777 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:16:54,778 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:17:03,374 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:17:03,409 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:17:03,478 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:17:04,329 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:17:04,997 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:17:06,062 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:17:07,809 DEBUG chr4: 2019 peaks called 2025-01-31 10:17:07,830 DEBUG chr5: 2034 peaks called 2025-01-31 10:17:07,967 DEBUG chr3: 1717 peaks called 2025-01-31 10:17:09,806 DEBUG chrX: 1024 peaks called 2025-01-31 10:17:10,761 DEBUG chr2: 2575 peaks called 2025-01-31 10:17:11,311 DEBUG chr1: 2103 peaks called 2025-01-31 10:17:14,524 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:17:15,488 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:17:15,645 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:17:16,287 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:17:16,635 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:17:17,235 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:17:18,865 DEBUG chr10: 1542 peaks called 2025-01-31 10:17:19,701 DEBUG chr6: 1589 peaks called 2025-01-31 10:17:20,319 DEBUG chr14: 1063 peaks called 2025-01-31 10:17:20,516 DEBUG chr7: 2188 peaks called 2025-01-31 10:17:20,559 DEBUG chr8: 1633 peaks called 2025-01-31 10:17:21,260 DEBUG chr9: 1782 peaks called 2025-01-31 10:17:24,519 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:17:25,543 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:17:25,851 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:17:25,902 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:17:25,967 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:17:26,262 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:17:27,923 DEBUG chr11: 2534 peaks called 2025-01-31 10:17:28,755 DEBUG chr16: 1077 peaks called 2025-01-31 10:17:28,769 DEBUG chr17: 1437 peaks called 2025-01-31 10:17:29,035 DEBUG chr13: 1602 peaks called 2025-01-31 10:17:29,397 DEBUG chr15: 1439 peaks called 2025-01-31 10:17:29,700 DEBUG chr12: 1243 peaks called 2025-01-31 10:17:30,671 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:17:31,209 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:17:32,407 DEBUG chr19: 1070 peaks called 2025-01-31 10:17:33,521 DEBUG chr18: 871 peaks called 2025-01-31 10:17:33,828 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:17:33,851 INFO There are 32542 peaks called at FDR=0.01 2025-01-31 10:17:34,484 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:17:34,485 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:17:37,583 DEBUG chr5: Calling hotspots 2025-01-31 10:17:37,999 DEBUG chr4: Calling hotspots 2025-01-31 10:17:38,029 DEBUG chr3: Calling hotspots 2025-01-31 10:17:38,138 DEBUG chrX: Calling hotspots 2025-01-31 10:17:38,430 DEBUG chr1: Calling hotspots 2025-01-31 10:17:38,502 DEBUG chr2: Calling hotspots 2025-01-31 10:17:40,978 DEBUG chr5: 1445 hotspots called 2025-01-31 10:17:41,423 DEBUG chr4: 1470 hotspots called 2025-01-31 10:17:41,793 DEBUG chrX: 706 hotspots called 2025-01-31 10:17:41,864 DEBUG chr3: 1214 hotspots called 2025-01-31 10:17:42,721 DEBUG chr1: 1480 hotspots called 2025-01-31 10:17:42,735 DEBUG chr2: 1877 hotspots called 2025-01-31 10:17:43,736 DEBUG chr6: Calling hotspots 2025-01-31 10:17:44,081 DEBUG chr7: Calling hotspots 2025-01-31 10:17:44,333 DEBUG chr10: Calling hotspots 2025-01-31 10:17:44,547 DEBUG chr8: Calling hotspots 2025-01-31 10:17:44,823 DEBUG chr14: Calling hotspots 2025-01-31 10:17:44,982 DEBUG chr9: Calling hotspots 2025-01-31 10:17:46,917 DEBUG chr6: 1170 hotspots called 2025-01-31 10:17:47,174 DEBUG chr7: 1566 hotspots called 2025-01-31 10:17:47,210 DEBUG chr10: 1104 hotspots called 2025-01-31 10:17:47,414 DEBUG chr8: 1193 hotspots called 2025-01-31 10:17:47,713 DEBUG chr14: 760 hotspots called 2025-01-31 10:17:48,164 DEBUG chr9: 1326 hotspots called 2025-01-31 10:17:49,174 DEBUG chr15: Calling hotspots 2025-01-31 10:17:49,184 DEBUG chr11: Calling hotspots 2025-01-31 10:17:49,322 DEBUG chr12: Calling hotspots 2025-01-31 10:17:49,412 DEBUG chr13: Calling hotspots 2025-01-31 10:17:49,398 DEBUG chr16: Calling hotspots 2025-01-31 10:17:49,801 DEBUG chr17: Calling hotspots 2025-01-31 10:17:51,372 DEBUG chr15: 1088 hotspots called 2025-01-31 10:17:51,820 DEBUG chr16: 774 hotspots called 2025-01-31 10:17:51,889 DEBUG chr12: 871 hotspots called 2025-01-31 10:17:51,976 DEBUG chr11: 1909 hotspots called 2025-01-31 10:17:52,065 DEBUG chr17: 1055 hotspots called 2025-01-31 10:17:52,068 DEBUG chr13: 1123 hotspots called 2025-01-31 10:17:52,526 DEBUG chr19: Calling hotspots 2025-01-31 10:17:52,606 DEBUG chr18: Calling hotspots 2025-01-31 10:17:53,770 DEBUG chr19: 800 hotspots called 2025-01-31 10:17:54,441 DEBUG chr18: 630 hotspots called 2025-01-31 10:17:54,601 DEBUG Results of call_hotspots emitted. 2025-01-31 10:17:54,624 INFO There are 23561 hotspots called at FDR=0.001 2025-01-31 10:17:55,759 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:17:55,760 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:18:03,546 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:18:03,950 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:18:04,181 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:18:04,247 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:18:04,925 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:18:05,941 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:18:07,477 DEBUG chr5: 1593 peaks called 2025-01-31 10:18:08,409 DEBUG chr4: 1595 peaks called 2025-01-31 10:18:08,566 DEBUG chr3: 1348 peaks called 2025-01-31 10:18:09,450 DEBUG chrX: 769 peaks called 2025-01-31 10:18:09,997 DEBUG chr2: 2042 peaks called 2025-01-31 10:18:11,395 DEBUG chr1: 1659 peaks called 2025-01-31 10:18:14,616 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:18:14,667 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:18:15,474 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:18:15,641 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:18:15,790 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:18:17,545 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:18:17,978 DEBUG chr10: 1230 peaks called 2025-01-31 10:18:19,131 DEBUG chr8: 1303 peaks called 2025-01-31 10:18:19,201 DEBUG chr6: 1247 peaks called 2025-01-31 10:18:19,419 DEBUG chr14: 824 peaks called 2025-01-31 10:18:20,653 DEBUG chr7: 1773 peaks called 2025-01-31 10:18:21,406 DEBUG chr9: 1414 peaks called 2025-01-31 10:18:23,158 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:18:24,353 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:18:24,694 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:18:25,062 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:18:25,465 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:18:25,565 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:18:26,854 DEBUG chr11: 2096 peaks called 2025-01-31 10:18:27,323 DEBUG chr15: 1205 peaks called 2025-01-31 10:18:28,135 DEBUG chr16: 856 peaks called 2025-01-31 10:18:28,238 DEBUG chr12: 967 peaks called 2025-01-31 10:18:28,408 DEBUG chr17: 1162 peaks called 2025-01-31 10:18:28,426 DEBUG chr13: 1247 peaks called 2025-01-31 10:18:29,843 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:18:29,922 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:18:31,515 DEBUG chr19: 884 peaks called 2025-01-31 10:18:32,130 DEBUG chr18: 673 peaks called 2025-01-31 10:18:32,393 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:18:32,416 INFO There are 25887 peaks called at FDR=0.001 2025-01-31 10:18:32,918 INFO Saving density 2025-01-31 10:18:32,919 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:18:47,251 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:18:52,879 DEBUG Converting density to bigwig 2025-01-31 10:20:13,667 INFO Program finished