2025-01-31 09:31:57,534 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:57,537 INFO Extracting cutcounts from bam file 2025-01-31 09:34:30,960 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:34:31,197 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:34:31,200 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:34:31,201 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:34:31,201 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:34:31,202 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:34:31,202 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:34:33,325 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:34:33,590 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:34:33,614 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:34:33,619 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:34:33,855 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:34:34,144 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:34:35,278 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:34:35,305 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:34:35,307 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:34:35,325 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:34:35,404 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:34:35,633 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:34:36,303 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:34:36,312 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:34:36,397 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:34:37,179 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:34:37,179 INFO Total cutcounts = 24821936 2025-01-31 09:34:37,185 INFO Smoothing signal using MODWT 2025-01-31 09:34:37,187 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:34:37,236 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:37,239 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:37,240 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:37,241 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:37,240 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:37,241 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:18,440 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:20,943 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:26,128 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:28,269 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:53,291 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:16,850 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:16,973 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:20,842 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:23,653 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:26,331 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:41,604 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:07,336 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:59,256 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:59,696 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:00,309 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:42:23,378 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:42:23,378 INFO Estimating parameters of background model 2025-01-31 09:42:23,378 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:42:28,312 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:42:28,385 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:42:28,780 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:42:28,935 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:42:29,110 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:42:29,641 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:42:45,025 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:42:45,027 DEBUG chrX: Signal quantile: 0.994. signal threshold: 11. Best RMSEA: 0.021 2025-01-31 09:42:45,567 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:42:45,569 DEBUG chr3: Signal quantile: 0.992. signal threshold: 15. Best RMSEA: 0.015 2025-01-31 09:42:46,499 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:42:46,501 DEBUG chr4: Signal quantile: 0.991. signal threshold: 16. Best RMSEA: 0.014 2025-01-31 09:42:47,136 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:42:47,137 DEBUG chr5: Signal quantile: 0.990. signal threshold: 16. Best RMSEA: 0.014 2025-01-31 09:42:47,830 DEBUG chrX total SNP count: 246660 2025-01-31 09:42:47,830 DEBUG chrX length: 171031299 2025-01-31 09:42:47,830 DEBUG ----------------------------------------- 2025-01-31 09:42:47,830 INFO Processing SNPs in chrX 2025-01-31 09:42:48,205 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 32880), (32880, 32881), (32881, 32936), (32936, 175562), (175562, 175566), (175566, 246660)] 2025-01-31 09:42:48,319 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:48,319 DEBUG chr3 total SNP count: 269601 2025-01-31 09:42:48,320 DEBUG chr3 length: 160039680 2025-01-31 09:42:48,320 DEBUG ----------------------------------------- 2025-01-31 09:42:48,320 INFO Processing SNPs in chr3 2025-01-31 09:42:48,585 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 269601)] 2025-01-31 09:42:48,767 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:49,048 DEBUG chr4 total SNP count: 260666 2025-01-31 09:42:49,049 DEBUG chr4 length: 156508116 2025-01-31 09:42:49,049 DEBUG ----------------------------------------- 2025-01-31 09:42:49,049 INFO Processing SNPs in chr4 2025-01-31 09:42:49,444 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 65819), (65819, 260666)] 2025-01-31 09:42:49,570 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:49,590 DEBUG chr5 total SNP count: 257857 2025-01-31 09:42:49,591 DEBUG chr5 length: 151834684 2025-01-31 09:42:49,591 DEBUG ----------------------------------------- 2025-01-31 09:42:49,591 INFO Processing SNPs in chr5 2025-01-31 09:42:49,844 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 257857)] 2025-01-31 09:42:50,015 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:50,361 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:42:50,363 DEBUG chr2: Signal quantile: 0.990. signal threshold: 15. Best RMSEA: 0.014 2025-01-31 09:42:52,113 DEBUG Segmenting atomic regions: 2025-01-31 09:42:52,218 DEBUG Processing 1/108 atomic regions from SNP 0 to 602 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:52,236 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:42:52,238 DEBUG chr1: Signal quantile: 0.992. signal threshold: 16. Best RMSEA: 0.013 2025-01-31 09:42:52,935 DEBUG Processing 2/108 atomic regions from SNP 302 to 904 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:53,142 DEBUG Processing 3/108 atomic regions from SNP 604 to 1206 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:53,267 DEBUG chr2 total SNP count: 315191 2025-01-31 09:42:53,267 DEBUG chr2 length: 182113224 2025-01-31 09:42:53,267 DEBUG ----------------------------------------- 2025-01-31 09:42:53,268 INFO Processing SNPs in chr2 2025-01-31 09:42:53,352 DEBUG Processing 4/108 atomic regions from SNP 906 to 1508 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:53,558 DEBUG Processing 5/108 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:53,748 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 307334), (307334, 315191)] 2025-01-31 09:42:53,769 DEBUG Processing 6/108 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:53,956 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:53,979 DEBUG Processing 7/108 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:54,192 DEBUG Processing 8/108 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:54,405 DEBUG Processing 9/108 atomic regions from SNP 2416 to 3018 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:54,609 DEBUG Processing 10/108 atomic regions from SNP 2718 to 3320 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:54,817 DEBUG Processing 11/108 atomic regions from SNP 3020 to 3622 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,033 DEBUG Processing 12/108 atomic regions from SNP 3322 to 3924 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,264 DEBUG Processing 13/108 atomic regions from SNP 3624 to 4226 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,299 DEBUG chr1 total SNP count: 341081 2025-01-31 09:42:55,299 DEBUG chr1 length: 195471971 2025-01-31 09:42:55,299 DEBUG ----------------------------------------- 2025-01-31 09:42:55,300 INFO Processing SNPs in chr1 2025-01-31 09:42:55,491 DEBUG Processing 14/108 atomic regions from SNP 3926 to 4528 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,630 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 341081)] 2025-01-31 09:42:55,738 DEBUG Processing 15/108 atomic regions from SNP 4228 to 4830 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,859 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:55,986 DEBUG Processing 16/108 atomic regions from SNP 4530 to 5132 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,231 DEBUG Processing 17/108 atomic regions from SNP 4832 to 5434 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,471 DEBUG Processing 18/108 atomic regions from SNP 5134 to 5736 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,691 DEBUG Processing 19/108 atomic regions from SNP 5436 to 6038 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,897 DEBUG Processing 20/108 atomic regions from SNP 5738 to 6340 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,081 DEBUG Segmenting atomic regions: 2025-01-31 09:42:57,104 DEBUG Processing 21/108 atomic regions from SNP 6040 to 6642 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,193 DEBUG Processing 1/218 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,312 DEBUG Processing 22/108 atomic regions from SNP 6342 to 6944 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,532 DEBUG Processing 23/108 atomic regions from SNP 6644 to 7246 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,740 DEBUG Processing 24/108 atomic regions from SNP 6946 to 7548 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,902 DEBUG Processing 2/218 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,948 DEBUG Processing 25/108 atomic regions from SNP 7248 to 7850 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:58,114 DEBUG Processing 3/218 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,154 DEBUG Processing 26/108 atomic regions from SNP 7550 to 8152 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:58,328 DEBUG Processing 4/218 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,363 DEBUG Processing 27/108 atomic regions from SNP 7852 to 8454 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:58,559 DEBUG Processing 5/218 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,580 DEBUG Processing 28/108 atomic regions from SNP 8154 to 8756 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:58,774 DEBUG Processing 6/218 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,789 DEBUG Processing 29/108 atomic regions from SNP 8456 to 9058 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:58,985 DEBUG Processing 7/218 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,996 DEBUG Processing 30/108 atomic regions from SNP 8758 to 9360 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:59,197 DEBUG Processing 8/218 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,227 DEBUG Processing 31/108 atomic regions from SNP 9060 to 9662 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:59,408 DEBUG Processing 9/218 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,435 DEBUG Processing 32/108 atomic regions from SNP 9362 to 9964 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:59,624 DEBUG Processing 10/218 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,647 DEBUG Processing 33/108 atomic regions from SNP 9664 to 10266 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:59,837 DEBUG Processing 11/218 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,859 DEBUG Processing 34/108 atomic regions from SNP 9966 to 10568 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:00,051 DEBUG Processing 12/218 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,071 DEBUG Processing 35/108 atomic regions from SNP 10268 to 10870 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:00,270 DEBUG Processing 13/218 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,289 DEBUG Processing 36/108 atomic regions from SNP 10570 to 11172 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:00,483 DEBUG Processing 14/218 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,514 DEBUG Processing 37/108 atomic regions from SNP 10872 to 11474 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:00,697 DEBUG Processing 15/218 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,754 DEBUG Processing 38/108 atomic regions from SNP 11174 to 11776 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:00,912 DEBUG Processing 16/218 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,002 DEBUG Processing 39/108 atomic regions from SNP 11476 to 12078 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:01,128 DEBUG Processing 17/218 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,245 DEBUG Processing 40/108 atomic regions from SNP 11778 to 12380 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:01,348 DEBUG Processing 18/218 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,475 DEBUG Processing 41/108 atomic regions from SNP 12080 to 12682 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:01,581 DEBUG Processing 19/218 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,702 DEBUG Processing 42/108 atomic regions from SNP 12382 to 12984 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:01,793 DEBUG Processing 20/218 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,926 DEBUG Processing 43/108 atomic regions from SNP 12684 to 13286 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:02,008 DEBUG Processing 21/218 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,158 DEBUG Processing 44/108 atomic regions from SNP 12986 to 13588 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:02,219 DEBUG Processing 22/218 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,395 DEBUG Processing 45/108 atomic regions from SNP 13288 to 13890 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:02,430 DEBUG Processing 23/218 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,640 DEBUG Processing 46/108 atomic regions from SNP 13590 to 14192 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:02,647 DEBUG Processing 24/218 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,863 DEBUG Processing 25/218 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,867 DEBUG Processing 47/108 atomic regions from SNP 13892 to 14494 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,076 DEBUG Processing 26/218 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,080 DEBUG Processing 48/108 atomic regions from SNP 14194 to 14796 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,289 DEBUG Processing 27/218 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,290 DEBUG Processing 49/108 atomic regions from SNP 14496 to 15098 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,499 DEBUG Processing 50/108 atomic regions from SNP 14798 to 15400 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,501 DEBUG Processing 28/218 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,713 DEBUG Processing 51/108 atomic regions from SNP 15100 to 15702 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,718 DEBUG Processing 29/218 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,927 DEBUG Processing 52/108 atomic regions from SNP 15402 to 16004 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,933 DEBUG Processing 30/218 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,145 DEBUG Processing 53/108 atomic regions from SNP 15704 to 16306 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:04,169 DEBUG Processing 31/218 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,358 DEBUG Processing 54/108 atomic regions from SNP 16006 to 16608 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:04,403 DEBUG Processing 32/218 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,569 DEBUG Processing 55/108 atomic regions from SNP 16308 to 16910 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:04,620 DEBUG Processing 33/218 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,778 DEBUG Processing 56/108 atomic regions from SNP 16610 to 17212 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:04,834 DEBUG Processing 34/218 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,985 DEBUG Processing 57/108 atomic regions from SNP 16912 to 17514 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:05,048 DEBUG Processing 35/218 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,196 DEBUG Processing 58/108 atomic regions from SNP 17214 to 17816 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:05,260 DEBUG Processing 36/218 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,408 DEBUG Processing 59/108 atomic regions from SNP 17516 to 18118 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:05,473 DEBUG Processing 37/218 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,619 DEBUG Processing 60/108 atomic regions from SNP 17818 to 18420 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:05,685 DEBUG Processing 38/218 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,832 DEBUG Processing 61/108 atomic regions from SNP 18120 to 18722 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:05,899 DEBUG Processing 39/218 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,042 DEBUG Processing 62/108 atomic regions from SNP 18422 to 19024 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:06,114 DEBUG Processing 40/218 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,253 DEBUG Processing 63/108 atomic regions from SNP 18724 to 19326 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:06,327 DEBUG Processing 41/218 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,465 DEBUG Processing 64/108 atomic regions from SNP 19026 to 19628 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:06,538 DEBUG Processing 42/218 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,684 DEBUG Processing 65/108 atomic regions from SNP 19328 to 19930 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:06,755 DEBUG Processing 43/218 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,902 DEBUG Processing 66/108 atomic regions from SNP 19630 to 20232 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:06,983 DEBUG Processing 44/218 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,121 DEBUG Processing 67/108 atomic regions from SNP 19932 to 20534 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:07,228 DEBUG Processing 45/218 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,334 DEBUG Processing 68/108 atomic regions from SNP 20234 to 20836 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:07,465 DEBUG Processing 46/218 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,545 DEBUG Processing 69/108 atomic regions from SNP 20536 to 21138 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:07,685 DEBUG Processing 47/218 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,759 DEBUG Processing 70/108 atomic regions from SNP 20838 to 21440 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:07,900 DEBUG Processing 48/218 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,973 DEBUG Processing 71/108 atomic regions from SNP 21140 to 21742 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,114 DEBUG Processing 49/218 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,193 DEBUG Processing 72/108 atomic regions from SNP 21442 to 22043 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,325 DEBUG Processing 50/218 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,405 DEBUG Processing 73/108 atomic regions from SNP 21743 to 22344 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,546 DEBUG Processing 51/218 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,627 DEBUG Processing 74/108 atomic regions from SNP 22044 to 22645 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,764 DEBUG Processing 52/218 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,839 DEBUG Processing 75/108 atomic regions from SNP 22345 to 22946 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,975 DEBUG Processing 53/218 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,048 DEBUG Processing 76/108 atomic regions from SNP 22646 to 23247 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:09,190 DEBUG Processing 54/218 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,261 DEBUG Processing 77/108 atomic regions from SNP 22947 to 23548 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:09,404 DEBUG Processing 55/218 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,476 DEBUG Processing 78/108 atomic regions from SNP 23248 to 23849 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:09,617 DEBUG Processing 56/218 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,706 DEBUG Processing 79/108 atomic regions from SNP 23549 to 24150 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:09,835 DEBUG Processing 57/218 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,924 DEBUG Processing 80/108 atomic regions from SNP 23850 to 24451 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:10,051 DEBUG Processing 58/218 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,133 DEBUG Processing 81/108 atomic regions from SNP 24151 to 24752 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:10,270 DEBUG Processing 59/218 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,343 DEBUG Processing 82/108 atomic regions from SNP 24452 to 25053 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:10,497 DEBUG Processing 60/218 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,570 DEBUG Processing 83/108 atomic regions from SNP 24753 to 25354 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:10,733 DEBUG Processing 61/218 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,787 DEBUG Processing 84/108 atomic regions from SNP 25054 to 25655 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:10,952 DEBUG Processing 62/218 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,002 DEBUG Processing 85/108 atomic regions from SNP 25355 to 25956 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:11,169 DEBUG Processing 63/218 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,237 DEBUG Processing 86/108 atomic regions from SNP 25656 to 26257 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:11,385 DEBUG Processing 64/218 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,472 DEBUG Processing 87/108 atomic regions from SNP 25957 to 26558 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:11,606 DEBUG Processing 65/218 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,706 DEBUG Processing 88/108 atomic regions from SNP 26258 to 26859 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:11,830 DEBUG Processing 66/218 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,925 DEBUG Processing 89/108 atomic regions from SNP 26559 to 27160 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,050 DEBUG Processing 67/218 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,141 DEBUG Processing 90/108 atomic regions from SNP 26860 to 27461 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,273 DEBUG Processing 68/218 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,359 DEBUG Processing 91/108 atomic regions from SNP 27161 to 27762 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,497 DEBUG Processing 69/218 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,582 DEBUG Processing 92/108 atomic regions from SNP 27462 to 28063 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,723 DEBUG Processing 70/218 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,805 DEBUG Processing 93/108 atomic regions from SNP 27763 to 28364 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,959 DEBUG Processing 71/218 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,036 DEBUG Processing 94/108 atomic regions from SNP 28064 to 28665 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,191 DEBUG Processing 72/218 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,265 DEBUG Processing 95/108 atomic regions from SNP 28365 to 28966 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,435 DEBUG Processing 73/218 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,498 DEBUG Processing 96/108 atomic regions from SNP 28666 to 29267 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,657 DEBUG Processing 74/218 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,721 DEBUG Processing 97/108 atomic regions from SNP 28967 to 29568 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,875 DEBUG Processing 75/218 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,941 DEBUG Processing 98/108 atomic regions from SNP 29268 to 29869 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:14,091 DEBUG Processing 76/218 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,155 DEBUG Processing 99/108 atomic regions from SNP 29569 to 30170 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:14,308 DEBUG Processing 77/218 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,368 DEBUG Processing 100/108 atomic regions from SNP 29870 to 30471 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:14,526 DEBUG Processing 78/218 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,581 DEBUG Processing 101/108 atomic regions from SNP 30171 to 30772 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:14,742 DEBUG Processing 79/218 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,795 DEBUG Processing 102/108 atomic regions from SNP 30472 to 31073 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:14,958 DEBUG Processing 80/218 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,009 DEBUG Processing 103/108 atomic regions from SNP 30773 to 31374 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:15,180 DEBUG Processing 81/218 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,229 DEBUG Processing 104/108 atomic regions from SNP 31074 to 31675 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:15,399 DEBUG Processing 82/218 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,445 DEBUG Processing 105/108 atomic regions from SNP 31375 to 31976 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:15,617 DEBUG Processing 83/218 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,660 DEBUG Processing 106/108 atomic regions from SNP 31676 to 32277 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:15,837 DEBUG Processing 84/218 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,879 DEBUG Processing 107/108 atomic regions from SNP 31977 to 32578 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:16,059 DEBUG Processing 85/218 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,101 DEBUG Processing 108/108 atomic regions from SNP 32278 to 32879 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:16,225 DEBUG Unique SNPs positions in subchromosome 1: 32880 2025-01-31 09:43:16,288 DEBUG Processing 86/218 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,299 DEBUG Subchromosome time: 27.979958193027414, subchromosome SNPs: 32880 2025-01-31 09:43:16,336 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:16,641 DEBUG Processing 87/218 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,936 DEBUG Processing 88/218 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,298 DEBUG Processing 89/218 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,680 DEBUG Processing 90/218 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,990 DEBUG Processing 91/218 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,298 DEBUG Processing 92/218 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,567 DEBUG Processing 93/218 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,866 DEBUG Processing 94/218 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,191 DEBUG Processing 95/218 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,432 DEBUG Segmenting atomic regions: 2025-01-31 09:43:19,471 DEBUG Processing 96/218 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,549 DEBUG Processing 1/897 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,717 DEBUG Processing 97/218 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,886 DEBUG Segmenting atomic regions: 2025-01-31 09:43:19,998 DEBUG Processing 1/858 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,008 DEBUG Processing 98/218 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,315 DEBUG Processing 99/218 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,512 DEBUG Processing 2/897 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,614 DEBUG Processing 100/218 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,745 DEBUG Processing 3/897 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,819 DEBUG Processing 2/858 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,847 DEBUG Processing 101/218 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,979 DEBUG Processing 4/897 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,061 DEBUG Processing 3/858 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,079 DEBUG Processing 102/218 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,217 DEBUG Processing 5/897 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,294 DEBUG Processing 4/858 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,302 DEBUG Processing 103/218 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,505 DEBUG Processing 6/897 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,577 DEBUG Processing 5/858 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,585 DEBUG Processing 104/218 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,800 DEBUG Processing 7/897 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,906 DEBUG Processing 6/858 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,914 DEBUG Processing 105/218 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,106 DEBUG Processing 8/897 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,238 DEBUG Processing 7/858 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,266 DEBUG Processing 106/218 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,434 DEBUG Processing 9/897 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,577 DEBUG Processing 8/858 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,607 DEBUG Processing 107/218 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,741 DEBUG Processing 10/897 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,911 DEBUG Processing 9/858 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,953 DEBUG Processing 108/218 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,062 DEBUG Processing 11/897 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,240 DEBUG Processing 10/858 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,309 DEBUG Processing 109/218 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,385 DEBUG Processing 12/897 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,574 DEBUG Processing 11/858 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,666 DEBUG Processing 110/218 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,713 DEBUG Processing 13/897 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,910 DEBUG Processing 12/858 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,016 DEBUG Processing 111/218 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,055 DEBUG Processing 14/897 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,203 DEBUG Processing 13/858 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,382 DEBUG Processing 112/218 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,410 DEBUG Processing 15/897 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,524 DEBUG Processing 14/858 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,731 DEBUG Processing 113/218 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,762 DEBUG Processing 16/897 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,869 DEBUG Processing 15/858 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,083 DEBUG Processing 114/218 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,142 DEBUG Processing 17/897 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,247 DEBUG Processing 16/858 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,359 DEBUG Processing 115/218 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,455 DEBUG Processing 18/897 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,577 DEBUG Processing 17/858 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,676 DEBUG Processing 116/218 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,754 DEBUG Processing 19/897 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,904 DEBUG Processing 18/858 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,015 DEBUG Processing 117/218 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,079 DEBUG Processing 20/897 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,241 DEBUG Processing 19/858 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,366 DEBUG Processing 118/218 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,405 DEBUG Processing 21/897 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,578 DEBUG Processing 20/858 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,697 DEBUG Processing 119/218 atomic regions from SNP 35518 to 36118 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,731 DEBUG Processing 22/897 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,915 DEBUG Processing 21/858 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,041 DEBUG Processing 120/218 atomic regions from SNP 35818 to 36418 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,072 DEBUG Processing 23/897 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,258 DEBUG Processing 22/858 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,409 DEBUG Processing 121/218 atomic regions from SNP 36118 to 36718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,424 DEBUG Processing 24/897 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,617 DEBUG Processing 23/858 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,765 DEBUG Processing 122/218 atomic regions from SNP 36418 to 37018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,768 DEBUG Processing 25/897 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,965 DEBUG Processing 24/858 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,131 DEBUG Processing 26/897 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,139 DEBUG Processing 123/218 atomic regions from SNP 36718 to 37318 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,337 DEBUG Processing 25/858 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,508 DEBUG Processing 27/897 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,521 DEBUG Processing 124/218 atomic regions from SNP 37018 to 37618 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,686 DEBUG Processing 26/858 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,900 DEBUG Processing 28/897 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,930 DEBUG Processing 125/218 atomic regions from SNP 37318 to 37918 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,036 DEBUG Processing 27/858 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,212 DEBUG Processing 29/897 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,234 DEBUG Processing 126/218 atomic regions from SNP 37618 to 38218 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,349 DEBUG Processing 28/858 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,534 DEBUG Processing 30/897 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,580 DEBUG Processing 127/218 atomic regions from SNP 37918 to 38518 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,587 DEBUG Segmenting atomic regions: 2025-01-31 09:43:29,681 DEBUG Processing 29/858 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,724 DEBUG Processing 1/1023 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,789 DEBUG Processing 31/897 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,866 DEBUG Processing 128/218 atomic regions from SNP 38218 to 38818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,004 DEBUG Processing 30/858 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,062 DEBUG Processing 32/897 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,096 DEBUG Processing 129/218 atomic regions from SNP 38518 to 39118 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,239 DEBUG Processing 31/858 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,380 DEBUG Processing 130/218 atomic regions from SNP 38818 to 39418 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,385 DEBUG Processing 33/897 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,534 DEBUG Processing 32/858 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,547 DEBUG Processing 2/1023 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,700 DEBUG Processing 131/218 atomic regions from SNP 39118 to 39718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,716 DEBUG Processing 34/897 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,859 DEBUG Processing 33/858 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,920 DEBUG Processing 3/1023 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,055 DEBUG Processing 132/218 atomic regions from SNP 39418 to 40018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,062 DEBUG Processing 35/897 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,203 DEBUG Processing 34/858 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,296 DEBUG Processing 4/1023 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,404 DEBUG Processing 36/897 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,408 DEBUG Processing 133/218 atomic regions from SNP 39718 to 40318 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,498 DEBUG Processing 35/858 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,617 DEBUG Processing 5/1023 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,763 DEBUG Processing 37/897 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,768 DEBUG Processing 134/218 atomic regions from SNP 40018 to 40618 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,831 DEBUG Processing 36/858 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,927 DEBUG Processing 6/1023 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,102 DEBUG Processing 38/897 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,116 DEBUG Processing 135/218 atomic regions from SNP 40318 to 40918 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,148 DEBUG Processing 37/858 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,249 DEBUG Processing 7/1023 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,409 DEBUG Processing 39/897 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,437 DEBUG Processing 136/218 atomic regions from SNP 40618 to 41218 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,448 DEBUG Processing 38/858 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,570 DEBUG Processing 8/1023 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,660 DEBUG Processing 40/897 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,672 DEBUG Processing 137/218 atomic regions from SNP 40918 to 41518 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,675 DEBUG Processing 39/858 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,830 DEBUG Processing 9/1023 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,896 DEBUG Processing 40/858 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,898 DEBUG Processing 138/218 atomic regions from SNP 41218 to 41818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,909 DEBUG Processing 41/897 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,078 DEBUG Processing 10/1023 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,093 DEBUG Segmenting atomic regions: 2025-01-31 09:43:33,120 DEBUG Processing 41/858 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,125 DEBUG Processing 139/218 atomic regions from SNP 41518 to 42118 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,154 DEBUG Processing 42/897 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,201 DEBUG Processing 1/474 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:33,331 DEBUG Processing 11/1023 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,350 DEBUG Processing 42/858 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,354 DEBUG Processing 140/218 atomic regions from SNP 41818 to 42418 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,392 DEBUG Processing 43/897 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,424 DEBUG Processing 2/474 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:33,574 DEBUG Processing 43/858 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,582 DEBUG Processing 141/218 atomic regions from SNP 42118 to 42718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,585 DEBUG Processing 12/1023 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,634 DEBUG Processing 44/897 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,646 DEBUG Processing 3/474 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:33,795 DEBUG Processing 44/858 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,807 DEBUG Processing 142/218 atomic regions from SNP 42418 to 43018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,839 DEBUG Processing 13/1023 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,870 DEBUG Processing 4/474 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:33,873 DEBUG Processing 45/897 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,010 DEBUG Processing 45/858 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,028 DEBUG Processing 143/218 atomic regions from SNP 42718 to 43318 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,087 DEBUG Processing 14/1023 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,090 DEBUG Processing 5/474 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:34,111 DEBUG Processing 46/897 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,228 DEBUG Processing 46/858 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,248 DEBUG Processing 144/218 atomic regions from SNP 43018 to 43618 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,304 DEBUG Processing 6/474 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:34,335 DEBUG Processing 15/1023 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,352 DEBUG Processing 47/897 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,476 DEBUG Processing 47/858 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,487 DEBUG Processing 145/218 atomic regions from SNP 43318 to 43918 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,530 DEBUG Processing 7/474 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:34,622 DEBUG Processing 16/1023 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,625 DEBUG Processing 48/897 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,758 DEBUG Processing 48/858 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,776 DEBUG Processing 146/218 atomic regions from SNP 43618 to 44218 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,793 DEBUG Processing 8/474 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:34,878 DEBUG Processing 49/897 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,901 DEBUG Processing 17/1023 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,984 DEBUG Processing 49/858 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,007 DEBUG Processing 147/218 atomic regions from SNP 43918 to 44518 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,024 DEBUG Processing 9/474 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:35,124 DEBUG Processing 50/897 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,164 DEBUG Processing 18/1023 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,205 DEBUG Processing 50/858 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,230 DEBUG Processing 148/218 atomic regions from SNP 44218 to 44818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,286 DEBUG Processing 10/474 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:35,371 DEBUG Processing 51/897 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,429 DEBUG Processing 19/1023 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,431 DEBUG Processing 51/858 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,456 DEBUG Processing 149/218 atomic regions from SNP 44518 to 45118 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,527 DEBUG Processing 11/474 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:35,618 DEBUG Processing 52/897 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,623 DEBUG Segmenting atomic regions: 2025-01-31 09:43:35,661 DEBUG Processing 52/858 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,689 DEBUG Processing 150/218 atomic regions from SNP 44818 to 45418 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,707 DEBUG Processing 20/1023 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,757 DEBUG Processing 12/474 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:35,771 DEBUG Processing 1/1135 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,859 DEBUG Processing 53/897 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,883 DEBUG Processing 53/858 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,915 DEBUG Processing 151/218 atomic regions from SNP 45118 to 45718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,978 DEBUG Processing 21/1023 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,979 DEBUG Processing 13/474 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,098 DEBUG Processing 54/897 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,106 DEBUG Processing 54/858 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,141 DEBUG Processing 152/218 atomic regions from SNP 45418 to 46018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,205 DEBUG Processing 14/474 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,241 DEBUG Processing 22/1023 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,334 DEBUG Processing 55/858 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,338 DEBUG Processing 55/897 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,370 DEBUG Processing 153/218 atomic regions from SNP 45718 to 46318 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,422 DEBUG Processing 15/474 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,490 DEBUG Processing 23/1023 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,557 DEBUG Processing 56/858 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,570 DEBUG Processing 56/897 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,584 DEBUG Processing 2/1135 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,596 DEBUG Processing 154/218 atomic regions from SNP 46018 to 46618 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,641 DEBUG Processing 16/474 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,742 DEBUG Processing 24/1023 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,784 DEBUG Processing 57/858 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,810 DEBUG Processing 57/897 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,834 DEBUG Processing 155/218 atomic regions from SNP 46318 to 46918 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,853 DEBUG Processing 3/1135 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,881 DEBUG Processing 17/474 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,984 DEBUG Processing 25/1023 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,001 DEBUG Processing 58/858 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,039 DEBUG Processing 58/897 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,060 DEBUG Processing 156/218 atomic regions from SNP 46618 to 47218 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,116 DEBUG Processing 4/1135 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,123 DEBUG Processing 18/474 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:37,217 DEBUG Processing 59/858 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,230 DEBUG Processing 26/1023 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,271 DEBUG Processing 59/897 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,286 DEBUG Processing 157/218 atomic regions from SNP 46918 to 47518 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,352 DEBUG Processing 19/474 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:37,385 DEBUG Processing 5/1135 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,441 DEBUG Processing 60/858 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,477 DEBUG Processing 27/1023 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,501 DEBUG Processing 60/897 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,509 DEBUG Processing 158/218 atomic regions from SNP 47218 to 47818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,583 DEBUG Processing 20/474 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:37,650 DEBUG Processing 6/1135 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,663 DEBUG Processing 61/858 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,722 DEBUG Processing 28/1023 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,729 DEBUG Processing 61/897 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,731 DEBUG Processing 159/218 atomic regions from SNP 47518 to 48118 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,802 DEBUG Processing 21/474 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:37,888 DEBUG Processing 62/858 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,912 DEBUG Processing 7/1135 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,957 DEBUG Processing 160/218 atomic regions from SNP 47818 to 48418 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,965 DEBUG Processing 62/897 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,970 DEBUG Processing 29/1023 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,022 DEBUG Processing 22/474 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:38,111 DEBUG Processing 63/858 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,172 DEBUG Processing 8/1135 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,189 DEBUG Processing 161/218 atomic regions from SNP 48118 to 48718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,204 DEBUG Processing 63/897 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,225 DEBUG Processing 30/1023 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,245 DEBUG Processing 23/474 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:38,333 DEBUG Processing 64/858 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,422 DEBUG Processing 162/218 atomic regions from SNP 48418 to 49018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,437 DEBUG Processing 9/1135 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,450 DEBUG Processing 64/897 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,475 DEBUG Processing 24/474 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:38,487 DEBUG Processing 31/1023 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,551 DEBUG Processing 65/858 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,721 DEBUG Processing 163/218 atomic regions from SNP 48718 to 49318 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,761 DEBUG Processing 10/1135 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,784 DEBUG Processing 65/897 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,809 DEBUG Processing 25/474 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:38,855 DEBUG Processing 32/1023 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,871 DEBUG Processing 66/858 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,050 DEBUG Processing 164/218 atomic regions from SNP 49018 to 49618 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,128 DEBUG Processing 11/1135 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,150 DEBUG Processing 66/897 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,165 DEBUG Processing 26/474 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:39,240 DEBUG Processing 67/858 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,263 DEBUG Processing 33/1023 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,424 DEBUG Processing 165/218 atomic regions from SNP 49318 to 49918 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,534 DEBUG Processing 12/1135 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,550 DEBUG Processing 27/474 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:39,556 DEBUG Processing 67/897 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,624 DEBUG Processing 68/858 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,678 DEBUG Processing 34/1023 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,792 DEBUG Processing 166/218 atomic regions from SNP 49618 to 50218 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,945 DEBUG Processing 68/897 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,958 DEBUG Processing 28/474 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:39,973 DEBUG Processing 13/1135 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,055 DEBUG Processing 69/858 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,129 DEBUG Processing 35/1023 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,172 DEBUG Processing 167/218 atomic regions from SNP 49918 to 50518 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,315 DEBUG Processing 69/897 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,346 DEBUG Processing 29/474 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:40,403 DEBUG Processing 14/1135 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,453 DEBUG Processing 70/858 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,545 DEBUG Processing 36/1023 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,582 DEBUG Processing 168/218 atomic regions from SNP 50218 to 50818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,700 DEBUG Processing 70/897 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,737 DEBUG Processing 30/474 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:40,829 DEBUG Processing 15/1135 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,847 DEBUG Processing 71/858 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,960 DEBUG Processing 37/1023 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,981 DEBUG Processing 169/218 atomic regions from SNP 50518 to 51118 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,002 DEBUG Processing 71/897 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,017 DEBUG Processing 31/474 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:41,083 DEBUG Processing 72/858 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,107 DEBUG Processing 16/1135 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,222 DEBUG Processing 38/1023 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,264 DEBUG Processing 170/218 atomic regions from SNP 50818 to 51418 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,307 DEBUG Processing 32/474 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:41,307 DEBUG Processing 72/897 atomic regions from SNP 21371 to 21972 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,388 DEBUG Processing 73/858 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,458 DEBUG Processing 17/1135 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,541 DEBUG Processing 39/1023 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,610 DEBUG Processing 171/218 atomic regions from SNP 51118 to 51718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,629 DEBUG Processing 33/474 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:41,645 DEBUG Processing 73/897 atomic regions from SNP 21672 to 22273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,737 DEBUG Processing 74/858 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,839 DEBUG Processing 18/1135 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,876 DEBUG Processing 40/1023 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,907 DEBUG Processing 34/474 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:41,916 DEBUG Processing 172/218 atomic regions from SNP 51418 to 52018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,935 DEBUG Processing 74/897 atomic regions from SNP 21973 to 22574 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,021 DEBUG Processing 75/858 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,205 DEBUG Processing 19/1135 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,240 DEBUG Processing 35/474 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:42,244 DEBUG Processing 41/1023 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,254 DEBUG Processing 173/218 atomic regions from SNP 51718 to 52318 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,268 DEBUG Processing 75/897 atomic regions from SNP 22274 to 22875 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,347 DEBUG Processing 76/858 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,621 DEBUG Processing 36/474 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:42,622 DEBUG Processing 20/1135 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,647 DEBUG Processing 174/218 atomic regions from SNP 52018 to 52618 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,650 DEBUG Processing 76/897 atomic regions from SNP 22575 to 23176 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,659 DEBUG Processing 42/1023 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,715 DEBUG Processing 77/858 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,031 DEBUG Processing 37/474 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:43,053 DEBUG Processing 77/897 atomic regions from SNP 22876 to 23477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,060 DEBUG Processing 21/1135 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,061 DEBUG Processing 175/218 atomic regions from SNP 52318 to 52918 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,092 DEBUG Processing 43/1023 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,099 DEBUG Processing 78/858 atomic regions from SNP 23177 to 23778 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,420 DEBUG Processing 38/474 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:43,459 DEBUG Processing 78/897 atomic regions from SNP 23177 to 23778 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,474 DEBUG Processing 176/218 atomic regions from SNP 52618 to 53218 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,490 DEBUG Processing 79/858 atomic regions from SNP 23478 to 24079 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,509 DEBUG Processing 44/1023 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,512 DEBUG Processing 22/1135 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,763 DEBUG Processing 39/474 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:43,839 DEBUG Processing 79/897 atomic regions from SNP 23478 to 24079 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,862 DEBUG Processing 177/218 atomic regions from SNP 52918 to 53518 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,890 DEBUG Processing 80/858 atomic regions from SNP 23779 to 24380 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,954 DEBUG Processing 45/1023 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,958 DEBUG Processing 23/1135 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,002 DEBUG Processing 40/474 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:44,079 DEBUG Processing 80/897 atomic regions from SNP 23779 to 24380 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,098 DEBUG Processing 178/218 atomic regions from SNP 53218 to 53818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,130 DEBUG Processing 81/858 atomic regions from SNP 24080 to 24681 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,291 DEBUG Processing 24/1135 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,291 DEBUG Processing 46/1023 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,300 DEBUG Processing 41/474 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:44,363 DEBUG Processing 81/897 atomic regions from SNP 24080 to 24681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,364 DEBUG Processing 179/218 atomic regions from SNP 53518 to 54118 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,376 DEBUG Processing 82/858 atomic regions from SNP 24381 to 24982 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,632 DEBUG Processing 42/474 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:44,646 DEBUG Processing 47/1023 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,651 DEBUG Processing 25/1135 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,663 DEBUG Processing 83/858 atomic regions from SNP 24682 to 25283 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,667 DEBUG Processing 180/218 atomic regions from SNP 53818 to 54418 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,675 DEBUG Processing 82/897 atomic regions from SNP 24381 to 24982 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,880 DEBUG Processing 43/474 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:44,934 DEBUG Processing 48/1023 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,945 DEBUG Processing 84/858 atomic regions from SNP 24983 to 25584 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,957 DEBUG Processing 26/1135 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,969 DEBUG Processing 181/218 atomic regions from SNP 54118 to 54718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,980 DEBUG Processing 83/897 atomic regions from SNP 24682 to 25283 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,153 DEBUG Processing 44/474 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:45,254 DEBUG Processing 85/858 atomic regions from SNP 25284 to 25885 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,284 DEBUG Processing 49/1023 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,290 DEBUG Processing 84/897 atomic regions from SNP 24983 to 25584 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,290 DEBUG Processing 27/1135 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,295 DEBUG Processing 182/218 atomic regions from SNP 54418 to 55018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,399 DEBUG Processing 45/474 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:45,529 DEBUG Processing 86/858 atomic regions from SNP 25585 to 26186 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,645 DEBUG Processing 50/1023 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,651 DEBUG Processing 85/897 atomic regions from SNP 25284 to 25885 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,663 DEBUG Processing 183/218 atomic regions from SNP 54718 to 55318 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,678 DEBUG Processing 28/1135 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,759 DEBUG Processing 46/474 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:45,842 DEBUG Processing 87/858 atomic regions from SNP 25886 to 26487 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,032 DEBUG Processing 86/897 atomic regions from SNP 25585 to 26186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,045 DEBUG Processing 184/218 atomic regions from SNP 55018 to 55618 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,049 DEBUG Processing 51/1023 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,091 DEBUG Processing 29/1135 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,173 DEBUG Processing 47/474 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:46,216 DEBUG Processing 88/858 atomic regions from SNP 26187 to 26788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,387 DEBUG Processing 87/897 atomic regions from SNP 25886 to 26487 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,387 DEBUG Processing 185/218 atomic regions from SNP 55318 to 55918 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,430 DEBUG Processing 52/1023 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,486 DEBUG Processing 30/1135 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,506 DEBUG Processing 48/474 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:46,528 DEBUG Processing 89/858 atomic regions from SNP 26488 to 27089 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,724 DEBUG Processing 88/897 atomic regions from SNP 26187 to 26788 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,728 DEBUG Processing 186/218 atomic regions from SNP 55618 to 56218 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,820 DEBUG Processing 53/1023 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,882 DEBUG Processing 49/474 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:46,903 DEBUG Processing 90/858 atomic regions from SNP 26789 to 27390 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,915 DEBUG Processing 31/1135 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,005 DEBUG Processing 187/218 atomic regions from SNP 55918 to 56518 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,016 DEBUG Processing 89/897 atomic regions from SNP 26488 to 27089 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,214 DEBUG Processing 54/1023 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,279 DEBUG Processing 50/474 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:47,318 DEBUG Processing 91/858 atomic regions from SNP 27090 to 27691 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,370 DEBUG Processing 32/1135 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,379 DEBUG Processing 188/218 atomic regions from SNP 56218 to 56818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,381 DEBUG Processing 90/897 atomic regions from SNP 26789 to 27390 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,570 DEBUG Processing 55/1023 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,601 DEBUG Processing 51/474 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:47,614 DEBUG Processing 92/858 atomic regions from SNP 27391 to 27992 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,688 DEBUG Processing 189/218 atomic regions from SNP 56518 to 57118 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,714 DEBUG Processing 33/1135 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,716 DEBUG Processing 91/897 atomic regions from SNP 27090 to 27691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,909 DEBUG Processing 56/1023 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,954 DEBUG Processing 52/474 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:47,987 DEBUG Processing 93/858 atomic regions from SNP 27692 to 28293 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,033 DEBUG Processing 190/218 atomic regions from SNP 56818 to 57418 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,070 DEBUG Processing 92/897 atomic regions from SNP 27391 to 27992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,115 DEBUG Processing 34/1135 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,261 DEBUG Processing 57/1023 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,308 DEBUG Processing 53/474 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:48,352 DEBUG Processing 94/858 atomic regions from SNP 27993 to 28594 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,399 DEBUG Processing 191/218 atomic regions from SNP 57118 to 57718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,427 DEBUG Processing 93/897 atomic regions from SNP 27692 to 28293 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,517 DEBUG Processing 35/1135 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,594 DEBUG Processing 58/1023 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,625 DEBUG Processing 54/474 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:48,646 DEBUG Processing 95/858 atomic regions from SNP 28294 to 28895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,688 DEBUG Processing 192/218 atomic regions from SNP 57418 to 58018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,737 DEBUG Processing 94/897 atomic regions from SNP 27993 to 28594 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,886 DEBUG Processing 36/1135 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,925 DEBUG Processing 55/474 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:48,931 DEBUG Processing 59/1023 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,936 DEBUG Processing 96/858 atomic regions from SNP 28595 to 29196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,951 DEBUG Processing 193/218 atomic regions from SNP 57718 to 58318 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,994 DEBUG Processing 95/897 atomic regions from SNP 28294 to 28895 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,165 DEBUG Processing 37/1135 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,175 DEBUG Processing 56/474 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:49,190 DEBUG Processing 97/858 atomic regions from SNP 28896 to 29497 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,196 DEBUG Processing 194/218 atomic regions from SNP 58018 to 58618 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,212 DEBUG Processing 60/1023 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,247 DEBUG Processing 96/897 atomic regions from SNP 28595 to 29196 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,428 DEBUG Processing 57/474 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:49,448 DEBUG Processing 195/218 atomic regions from SNP 58318 to 58918 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,450 DEBUG Processing 98/858 atomic regions from SNP 29197 to 29798 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,465 DEBUG Processing 38/1135 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,486 DEBUG Processing 61/1023 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,501 DEBUG Processing 97/897 atomic regions from SNP 28896 to 29497 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,655 DEBUG Processing 58/474 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:49,679 DEBUG Processing 196/218 atomic regions from SNP 58618 to 59218 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,681 DEBUG Processing 99/858 atomic regions from SNP 29498 to 30099 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,744 DEBUG Processing 98/897 atomic regions from SNP 29197 to 29798 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,749 DEBUG Processing 62/1023 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,756 DEBUG Processing 39/1135 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,869 DEBUG Processing 59/474 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:49,904 DEBUG Processing 197/218 atomic regions from SNP 58918 to 59518 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,904 DEBUG Processing 100/858 atomic regions from SNP 29799 to 30400 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,984 DEBUG Processing 99/897 atomic regions from SNP 29498 to 30099 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,004 DEBUG Processing 63/1023 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,032 DEBUG Processing 40/1135 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,082 DEBUG Processing 60/474 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:50,125 DEBUG Processing 101/858 atomic regions from SNP 30100 to 30701 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,126 DEBUG Processing 198/218 atomic regions from SNP 59218 to 59818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,219 DEBUG Processing 100/897 atomic regions from SNP 29799 to 30400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,255 DEBUG Processing 64/1023 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,292 DEBUG Processing 41/1135 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,299 DEBUG Processing 61/474 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:50,350 DEBUG Processing 199/218 atomic regions from SNP 59518 to 60118 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,351 DEBUG Processing 102/858 atomic regions from SNP 30401 to 31002 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,449 DEBUG Processing 101/897 atomic regions from SNP 30100 to 30701 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,505 DEBUG Processing 65/1023 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,520 DEBUG Processing 62/474 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:50,552 DEBUG Processing 42/1135 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,576 DEBUG Processing 200/218 atomic regions from SNP 59818 to 60418 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,576 DEBUG Processing 103/858 atomic regions from SNP 30702 to 31303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,677 DEBUG Processing 102/897 atomic regions from SNP 30401 to 31002 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,741 DEBUG Processing 63/474 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:50,753 DEBUG Processing 66/1023 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,803 DEBUG Processing 104/858 atomic regions from SNP 31003 to 31604 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,804 DEBUG Processing 201/218 atomic regions from SNP 60118 to 60718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,812 DEBUG Processing 43/1135 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,907 DEBUG Processing 103/897 atomic regions from SNP 30702 to 31303 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,961 DEBUG Processing 64/474 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:51,012 DEBUG Processing 67/1023 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,031 DEBUG Processing 105/858 atomic regions from SNP 31304 to 31905 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,032 DEBUG Processing 202/218 atomic regions from SNP 60418 to 61018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,073 DEBUG Processing 44/1135 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,141 DEBUG Processing 104/897 atomic regions from SNP 31003 to 31604 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,172 DEBUG Processing 65/474 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:51,269 DEBUG Processing 68/1023 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,276 DEBUG Processing 106/858 atomic regions from SNP 31605 to 32206 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,289 DEBUG Processing 203/218 atomic regions from SNP 60718 to 61318 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,349 DEBUG Processing 45/1135 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,412 DEBUG Processing 66/474 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:51,415 DEBUG Processing 105/897 atomic regions from SNP 31304 to 31905 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,541 DEBUG Processing 107/858 atomic regions from SNP 31906 to 32507 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,559 DEBUG Processing 69/1023 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,561 DEBUG Processing 204/218 atomic regions from SNP 61018 to 61618 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,691 DEBUG Processing 46/1135 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,707 DEBUG Processing 67/474 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:51,716 DEBUG Processing 106/897 atomic regions from SNP 31605 to 32206 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,820 DEBUG Processing 108/858 atomic regions from SNP 32207 to 32808 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,854 DEBUG Processing 205/218 atomic regions from SNP 61318 to 61918 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,872 DEBUG Processing 70/1023 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,934 DEBUG Processing 68/474 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:51,956 DEBUG Processing 107/897 atomic regions from SNP 31906 to 32507 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,962 DEBUG Processing 47/1135 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,054 DEBUG Processing 109/858 atomic regions from SNP 32508 to 33109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,080 DEBUG Processing 206/218 atomic regions from SNP 61618 to 62218 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,129 DEBUG Processing 71/1023 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,156 DEBUG Processing 69/474 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:52,195 DEBUG Processing 108/897 atomic regions from SNP 32207 to 32808 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,225 DEBUG Processing 48/1135 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,297 DEBUG Processing 110/858 atomic regions from SNP 32809 to 33410 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,306 DEBUG Processing 207/218 atomic regions from SNP 61918 to 62518 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,376 DEBUG Processing 72/1023 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,379 DEBUG Processing 70/474 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:52,431 DEBUG Processing 109/897 atomic regions from SNP 32508 to 33109 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,482 DEBUG Processing 49/1135 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,526 DEBUG Processing 111/858 atomic regions from SNP 33110 to 33711 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,532 DEBUG Processing 208/218 atomic regions from SNP 62218 to 62818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,618 DEBUG Processing 71/474 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:52,623 DEBUG Processing 73/1023 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,659 DEBUG Processing 110/897 atomic regions from SNP 32809 to 33410 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,739 DEBUG Processing 50/1135 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,752 DEBUG Processing 112/858 atomic regions from SNP 33411 to 34012 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,759 DEBUG Processing 209/218 atomic regions from SNP 62518 to 63118 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,862 DEBUG Processing 72/474 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:52,873 DEBUG Processing 74/1023 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,894 DEBUG Processing 111/897 atomic regions from SNP 33110 to 33711 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,998 DEBUG Processing 51/1135 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,000 DEBUG Processing 210/218 atomic regions from SNP 62818 to 63418 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,005 DEBUG Processing 113/858 atomic regions from SNP 33712 to 34313 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,090 DEBUG Processing 73/474 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:53,120 DEBUG Processing 75/1023 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,127 DEBUG Processing 112/897 atomic regions from SNP 33411 to 34012 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,251 DEBUG Processing 211/218 atomic regions from SNP 63118 to 63718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,263 DEBUG Processing 52/1135 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,264 DEBUG Processing 114/858 atomic regions from SNP 34013 to 34614 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,311 DEBUG Processing 74/474 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:53,369 DEBUG Processing 113/897 atomic regions from SNP 33712 to 34313 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,373 DEBUG Processing 76/1023 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,480 DEBUG Processing 212/218 atomic regions from SNP 63418 to 64018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,520 DEBUG Processing 115/858 atomic regions from SNP 34314 to 34915 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,528 DEBUG Processing 53/1135 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,536 DEBUG Processing 75/474 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:53,608 DEBUG Processing 114/897 atomic regions from SNP 34013 to 34614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,623 DEBUG Processing 77/1023 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,721 DEBUG Processing 213/218 atomic regions from SNP 63718 to 64318 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,753 DEBUG Processing 76/474 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:53,772 DEBUG Processing 116/858 atomic regions from SNP 34615 to 35216 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,786 DEBUG Processing 54/1135 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,852 DEBUG Processing 115/897 atomic regions from SNP 34314 to 34915 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,874 DEBUG Processing 78/1023 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,966 DEBUG Processing 77/474 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:53,973 DEBUG Processing 214/218 atomic regions from SNP 64018 to 64618 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,029 DEBUG Processing 117/858 atomic regions from SNP 34916 to 35517 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,041 DEBUG Processing 55/1135 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,092 DEBUG Processing 116/897 atomic regions from SNP 34615 to 35216 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,124 DEBUG Processing 79/1023 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,180 DEBUG Processing 78/474 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:54,226 DEBUG Processing 215/218 atomic regions from SNP 64318 to 64918 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,269 DEBUG Processing 118/858 atomic regions from SNP 35217 to 35818 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,307 DEBUG Processing 56/1135 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,342 DEBUG Processing 117/897 atomic regions from SNP 34916 to 35517 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,376 DEBUG Processing 80/1023 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,399 DEBUG Processing 79/474 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:54,472 DEBUG Processing 216/218 atomic regions from SNP 64618 to 65218 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,485 DEBUG Processing 119/858 atomic regions from SNP 35518 to 36119 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,563 DEBUG Processing 57/1135 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,584 DEBUG Processing 118/897 atomic regions from SNP 35217 to 35818 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,619 DEBUG Processing 80/474 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:54,629 DEBUG Processing 81/1023 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,715 DEBUG Processing 217/218 atomic regions from SNP 64918 to 65518 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,720 DEBUG Processing 120/858 atomic regions from SNP 35819 to 36420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,821 DEBUG Processing 119/897 atomic regions from SNP 35518 to 36119 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,822 DEBUG Processing 58/1135 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,840 DEBUG Processing 81/474 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:54,882 DEBUG Processing 82/1023 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,962 DEBUG Processing 218/218 atomic regions from SNP 65218 to 65818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,967 DEBUG Processing 121/858 atomic regions from SNP 36120 to 36721 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,051 DEBUG Processing 120/897 atomic regions from SNP 35819 to 36420 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,065 DEBUG Processing 82/474 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,091 DEBUG Processing 59/1135 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,105 DEBUG Unique SNPs positions in subchromosome 1: 65819 2025-01-31 09:43:55,131 DEBUG Processing 83/1023 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,190 DEBUG Processing 122/858 atomic regions from SNP 36421 to 37022 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,283 DEBUG Processing 83/474 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,284 DEBUG Processing 121/897 atomic regions from SNP 36120 to 36721 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,287 DEBUG Subchromosome time: 65.7166422290029, subchromosome SNPs: 65819 2025-01-31 09:43:55,336 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:55,351 DEBUG Processing 60/1135 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,379 DEBUG Processing 84/1023 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,409 DEBUG Processing 123/858 atomic regions from SNP 36722 to 37323 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,512 DEBUG Processing 122/897 atomic regions from SNP 36421 to 37022 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,517 DEBUG Processing 84/474 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,605 DEBUG Processing 61/1135 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,628 DEBUG Processing 85/1023 atomic regions from SNP 25284 to 25885 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,631 DEBUG Processing 124/858 atomic regions from SNP 37023 to 37624 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,736 DEBUG Processing 85/474 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,743 DEBUG Processing 123/897 atomic regions from SNP 36722 to 37323 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,857 DEBUG Processing 125/858 atomic regions from SNP 37324 to 37925 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,863 DEBUG Processing 62/1135 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,882 DEBUG Processing 86/1023 atomic regions from SNP 25585 to 26186 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,944 DEBUG Processing 86/474 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,970 DEBUG Processing 124/897 atomic regions from SNP 37023 to 37624 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,083 DEBUG Processing 126/858 atomic regions from SNP 37625 to 38226 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,124 DEBUG Processing 63/1135 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,135 DEBUG Processing 87/1023 atomic regions from SNP 25886 to 26487 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,164 DEBUG Processing 87/474 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:56,205 DEBUG Processing 125/897 atomic regions from SNP 37324 to 37925 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,311 DEBUG Processing 127/858 atomic regions from SNP 37926 to 38527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,379 DEBUG Processing 88/474 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:56,388 DEBUG Processing 88/1023 atomic regions from SNP 26187 to 26788 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,388 DEBUG Processing 64/1135 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,437 DEBUG Processing 126/897 atomic regions from SNP 37625 to 38226 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,544 DEBUG Processing 128/858 atomic regions from SNP 38227 to 38828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,597 DEBUG Processing 89/474 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:56,645 DEBUG Processing 65/1135 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,666 DEBUG Processing 89/1023 atomic regions from SNP 26488 to 27089 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,669 DEBUG Processing 127/897 atomic regions from SNP 37926 to 38527 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,774 DEBUG Processing 129/858 atomic regions from SNP 38528 to 39129 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,815 DEBUG Processing 90/474 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:56,896 DEBUG Processing 66/1135 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,900 DEBUG Processing 128/897 atomic regions from SNP 38227 to 38828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,920 DEBUG Processing 90/1023 atomic regions from SNP 26789 to 27390 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,003 DEBUG Processing 130/858 atomic regions from SNP 38829 to 39430 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,035 DEBUG Processing 91/474 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,134 DEBUG Processing 129/897 atomic regions from SNP 38528 to 39129 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,145 DEBUG Processing 67/1135 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,162 DEBUG Processing 91/1023 atomic regions from SNP 27090 to 27691 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,233 DEBUG Processing 131/858 atomic regions from SNP 39130 to 39731 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,260 DEBUG Processing 92/474 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,368 DEBUG Processing 130/897 atomic regions from SNP 38829 to 39430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,400 DEBUG Processing 68/1135 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,415 DEBUG Processing 92/1023 atomic regions from SNP 27391 to 27992 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,466 DEBUG Processing 132/858 atomic regions from SNP 39431 to 40032 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,493 DEBUG Processing 93/474 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,609 DEBUG Processing 131/897 atomic regions from SNP 39130 to 39731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,659 DEBUG Processing 69/1135 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,692 DEBUG Processing 93/1023 atomic regions from SNP 27692 to 28293 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,699 DEBUG Processing 133/858 atomic regions from SNP 39732 to 40333 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,719 DEBUG Processing 94/474 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,850 DEBUG Processing 132/897 atomic regions from SNP 39431 to 40032 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,924 DEBUG Processing 70/1135 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,934 DEBUG Processing 134/858 atomic regions from SNP 40033 to 40634 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,946 DEBUG Processing 95/474 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,966 DEBUG Processing 94/1023 atomic regions from SNP 27993 to 28594 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,094 DEBUG Processing 133/897 atomic regions from SNP 39732 to 40333 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,177 DEBUG Processing 135/858 atomic regions from SNP 40334 to 40935 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,178 DEBUG Processing 96/474 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:58,196 DEBUG Processing 71/1135 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,246 DEBUG Processing 95/1023 atomic regions from SNP 28294 to 28895 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,330 DEBUG Processing 134/897 atomic regions from SNP 40033 to 40634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,409 DEBUG Processing 97/474 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:58,413 DEBUG Processing 136/858 atomic regions from SNP 40635 to 41236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,466 DEBUG Processing 72/1135 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,502 DEBUG Processing 96/1023 atomic regions from SNP 28595 to 29196 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,577 DEBUG Processing 135/897 atomic regions from SNP 40334 to 40935 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,646 DEBUG Processing 98/474 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:58,648 DEBUG Processing 137/858 atomic regions from SNP 40936 to 41537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,734 DEBUG Processing 73/1135 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,755 DEBUG Processing 97/1023 atomic regions from SNP 28896 to 29497 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,818 DEBUG Processing 136/897 atomic regions from SNP 40635 to 41236 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,896 DEBUG Processing 99/474 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:58,904 DEBUG Processing 138/858 atomic regions from SNP 41237 to 41838 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,042 DEBUG Processing 74/1135 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,057 DEBUG Processing 98/1023 atomic regions from SNP 29197 to 29798 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,092 DEBUG Processing 137/897 atomic regions from SNP 40936 to 41537 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,212 DEBUG Processing 100/474 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:59,216 DEBUG Processing 139/858 atomic regions from SNP 41538 to 42139 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,361 DEBUG Processing 75/1135 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,366 DEBUG Processing 138/897 atomic regions from SNP 41237 to 41838 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,383 DEBUG Processing 99/1023 atomic regions from SNP 29498 to 30099 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,538 DEBUG Processing 101/474 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:59,555 DEBUG Processing 140/858 atomic regions from SNP 41839 to 42440 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,692 DEBUG Processing 139/897 atomic regions from SNP 41538 to 42139 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,727 DEBUG Processing 100/1023 atomic regions from SNP 29799 to 30400 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,728 DEBUG Processing 76/1135 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,812 DEBUG Processing 102/474 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:59,841 DEBUG Processing 141/858 atomic regions from SNP 42140 to 42741 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,025 DEBUG Processing 140/897 atomic regions from SNP 41839 to 42440 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,077 DEBUG Processing 101/1023 atomic regions from SNP 30100 to 30701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,083 DEBUG Processing 77/1135 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,123 DEBUG Processing 103/474 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,128 DEBUG Processing 142/858 atomic regions from SNP 42441 to 43042 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,374 DEBUG Processing 141/897 atomic regions from SNP 42140 to 42741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,451 DEBUG Processing 102/1023 atomic regions from SNP 30401 to 31002 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,463 DEBUG Processing 104/474 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,466 DEBUG Processing 78/1135 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,470 DEBUG Processing 143/858 atomic regions from SNP 42742 to 43343 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,713 DEBUG Processing 142/897 atomic regions from SNP 42441 to 43042 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,837 DEBUG Processing 103/1023 atomic regions from SNP 30702 to 31303 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,838 DEBUG Processing 105/474 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,841 DEBUG Processing 144/858 atomic regions from SNP 43043 to 43644 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,860 DEBUG Processing 79/1135 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,016 DEBUG Processing 143/897 atomic regions from SNP 42742 to 43343 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,074 DEBUG Processing 106/474 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,086 DEBUG Processing 145/858 atomic regions from SNP 43344 to 43945 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,106 DEBUG Processing 104/1023 atomic regions from SNP 31003 to 31604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,136 DEBUG Processing 80/1135 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,266 DEBUG Processing 144/897 atomic regions from SNP 43043 to 43644 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,295 DEBUG Processing 107/474 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,314 DEBUG Processing 146/858 atomic regions from SNP 43645 to 44246 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,365 DEBUG Processing 105/1023 atomic regions from SNP 31304 to 31905 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,402 DEBUG Processing 81/1135 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,497 DEBUG Processing 145/897 atomic regions from SNP 43344 to 43945 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,510 DEBUG Processing 108/474 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,539 DEBUG Processing 147/858 atomic regions from SNP 43946 to 44547 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,631 DEBUG Processing 106/1023 atomic regions from SNP 31605 to 32206 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,666 DEBUG Processing 82/1135 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,727 DEBUG Processing 109/474 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,729 DEBUG Processing 146/897 atomic regions from SNP 43645 to 44246 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,772 DEBUG Processing 148/858 atomic regions from SNP 44247 to 44848 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,897 DEBUG Processing 107/1023 atomic regions from SNP 31906 to 32507 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,929 DEBUG Processing 83/1135 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,955 DEBUG Processing 110/474 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,964 DEBUG Processing 147/897 atomic regions from SNP 43946 to 44547 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,013 DEBUG Processing 149/858 atomic regions from SNP 44548 to 45149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,146 DEBUG Processing 108/1023 atomic regions from SNP 32207 to 32808 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,188 DEBUG Processing 84/1135 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,192 DEBUG Processing 111/474 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,213 DEBUG Processing 148/897 atomic regions from SNP 44247 to 44848 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,265 DEBUG Processing 150/858 atomic regions from SNP 44849 to 45450 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,404 DEBUG Processing 109/1023 atomic regions from SNP 32508 to 33109 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,445 DEBUG Processing 112/474 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,477 DEBUG Processing 85/1135 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,487 DEBUG Processing 149/897 atomic regions from SNP 44548 to 45149 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,565 DEBUG Processing 151/858 atomic regions from SNP 45150 to 45751 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,697 DEBUG Processing 110/1023 atomic regions from SNP 32809 to 33410 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,728 DEBUG Processing 113/474 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,786 DEBUG Processing 150/897 atomic regions from SNP 44849 to 45450 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,798 DEBUG Processing 86/1135 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,916 DEBUG Processing 152/858 atomic regions from SNP 45451 to 46052 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,978 DEBUG Processing 114/474 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,999 DEBUG Processing 111/1023 atomic regions from SNP 33110 to 33711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,036 DEBUG Processing 151/897 atomic regions from SNP 45150 to 45751 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,066 DEBUG Processing 87/1135 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,183 DEBUG Processing 153/858 atomic regions from SNP 45752 to 46353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,202 DEBUG Processing 115/474 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,258 DEBUG Processing 112/1023 atomic regions from SNP 33411 to 34012 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,282 DEBUG Processing 152/897 atomic regions from SNP 45451 to 46052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,331 DEBUG Processing 88/1135 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,423 DEBUG Processing 116/474 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,429 DEBUG Processing 154/858 atomic regions from SNP 46053 to 46654 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,512 DEBUG Processing 113/1023 atomic regions from SNP 33712 to 34313 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,528 DEBUG Processing 153/897 atomic regions from SNP 45752 to 46353 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,587 DEBUG Processing 89/1135 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,636 DEBUG Processing 117/474 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,648 DEBUG Processing 155/858 atomic regions from SNP 46354 to 46955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,762 DEBUG Processing 114/1023 atomic regions from SNP 34013 to 34614 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,791 DEBUG Processing 154/897 atomic regions from SNP 46053 to 46654 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,841 DEBUG Processing 90/1135 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,847 DEBUG Processing 118/474 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,869 DEBUG Processing 156/858 atomic regions from SNP 46655 to 47256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,015 DEBUG Processing 115/1023 atomic regions from SNP 34314 to 34915 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,046 DEBUG Processing 155/897 atomic regions from SNP 46354 to 46955 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,063 DEBUG Processing 119/474 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,092 DEBUG Processing 157/858 atomic regions from SNP 46956 to 47556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,098 DEBUG Processing 91/1135 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,271 DEBUG Processing 116/1023 atomic regions from SNP 34615 to 35216 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,284 DEBUG Processing 120/474 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,297 DEBUG Processing 156/897 atomic regions from SNP 46655 to 47256 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,319 DEBUG Processing 158/858 atomic regions from SNP 47256 to 47856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,360 DEBUG Processing 92/1135 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,507 DEBUG Processing 121/474 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,529 DEBUG Processing 117/1023 atomic regions from SNP 34916 to 35517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,552 DEBUG Processing 157/897 atomic regions from SNP 46956 to 47557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,564 DEBUG Processing 159/858 atomic regions from SNP 47556 to 48156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,615 DEBUG Processing 93/1135 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,724 DEBUG Processing 122/474 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,780 DEBUG Processing 118/1023 atomic regions from SNP 35217 to 35818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,788 DEBUG Processing 158/897 atomic regions from SNP 47257 to 47858 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,796 DEBUG Processing 160/858 atomic regions from SNP 47856 to 48456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,874 DEBUG Processing 94/1135 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,940 DEBUG Processing 123/474 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,024 DEBUG Processing 161/858 atomic regions from SNP 48156 to 48756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,029 DEBUG Processing 159/897 atomic regions from SNP 47558 to 48159 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,035 DEBUG Processing 119/1023 atomic regions from SNP 35518 to 36119 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,132 DEBUG Processing 95/1135 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,155 DEBUG Processing 124/474 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,256 DEBUG Processing 162/858 atomic regions from SNP 48456 to 49056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,266 DEBUG Processing 160/897 atomic regions from SNP 47859 to 48460 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,292 DEBUG Processing 120/1023 atomic regions from SNP 35819 to 36420 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,368 DEBUG Processing 125/474 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,391 DEBUG Processing 96/1135 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,499 DEBUG Processing 161/897 atomic regions from SNP 48160 to 48761 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,504 DEBUG Processing 163/858 atomic regions from SNP 48756 to 49356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,550 DEBUG Processing 121/1023 atomic regions from SNP 36120 to 36721 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,586 DEBUG Processing 126/474 atomic regions from SNP 37625 to 38225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,648 DEBUG Processing 97/1135 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,731 DEBUG Processing 162/897 atomic regions from SNP 48461 to 49062 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,752 DEBUG Processing 164/858 atomic regions from SNP 49056 to 49656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,802 DEBUG Processing 122/1023 atomic regions from SNP 36421 to 37022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,803 DEBUG Processing 127/474 atomic regions from SNP 37925 to 38525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,905 DEBUG Processing 98/1135 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,965 DEBUG Processing 163/897 atomic regions from SNP 48762 to 49363 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,996 DEBUG Processing 165/858 atomic regions from SNP 49356 to 49956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,023 DEBUG Processing 128/474 atomic regions from SNP 38225 to 38825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,055 DEBUG Processing 123/1023 atomic regions from SNP 36722 to 37323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,161 DEBUG Processing 99/1135 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,206 DEBUG Processing 164/897 atomic regions from SNP 49063 to 49664 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,241 DEBUG Processing 129/474 atomic regions from SNP 38525 to 39125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,243 DEBUG Processing 166/858 atomic regions from SNP 49656 to 50256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,303 DEBUG Processing 124/1023 atomic regions from SNP 37023 to 37624 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,419 DEBUG Processing 100/1135 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,442 DEBUG Processing 165/897 atomic regions from SNP 49364 to 49965 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,461 DEBUG Processing 130/474 atomic regions from SNP 38825 to 39425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,496 DEBUG Processing 167/858 atomic regions from SNP 49956 to 50556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,556 DEBUG Processing 125/1023 atomic regions from SNP 37324 to 37925 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,685 DEBUG Processing 166/897 atomic regions from SNP 49665 to 50266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,686 DEBUG Processing 101/1135 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,690 DEBUG Processing 131/474 atomic regions from SNP 39125 to 39725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,762 DEBUG Processing 168/858 atomic regions from SNP 50256 to 50856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,808 DEBUG Processing 126/1023 atomic regions from SNP 37625 to 38226 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,912 DEBUG Processing 132/474 atomic regions from SNP 39425 to 40025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,912 DEBUG Processing 167/897 atomic regions from SNP 49966 to 50567 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,948 DEBUG Processing 102/1135 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,010 DEBUG Processing 169/858 atomic regions from SNP 50556 to 51156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,066 DEBUG Processing 127/1023 atomic regions from SNP 37926 to 38527 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,134 DEBUG Processing 133/474 atomic regions from SNP 39725 to 40325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,141 DEBUG Processing 168/897 atomic regions from SNP 50267 to 50868 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,207 DEBUG Processing 103/1135 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,232 DEBUG Processing 170/858 atomic regions from SNP 50856 to 51456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,327 DEBUG Processing 128/1023 atomic regions from SNP 38227 to 38828 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,353 DEBUG Processing 134/474 atomic regions from SNP 40025 to 40625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,367 DEBUG Processing 169/897 atomic regions from SNP 50568 to 51169 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,454 DEBUG Processing 171/858 atomic regions from SNP 51156 to 51756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,468 DEBUG Processing 104/1135 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,573 DEBUG Processing 135/474 atomic regions from SNP 40325 to 40925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,603 DEBUG Processing 170/897 atomic regions from SNP 50869 to 51470 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,614 DEBUG Processing 129/1023 atomic regions from SNP 38528 to 39129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,707 DEBUG Processing 172/858 atomic regions from SNP 51456 to 52056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,738 DEBUG Processing 105/1135 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,796 DEBUG Processing 136/474 atomic regions from SNP 40625 to 41225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,836 DEBUG Processing 171/897 atomic regions from SNP 51170 to 51771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,904 DEBUG Processing 130/1023 atomic regions from SNP 38829 to 39430 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,953 DEBUG Processing 173/858 atomic regions from SNP 51756 to 52356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,999 DEBUG Processing 106/1135 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,010 DEBUG Processing 137/474 atomic regions from SNP 40925 to 41525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,069 DEBUG Processing 172/897 atomic regions from SNP 51471 to 52072 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,204 DEBUG Processing 131/1023 atomic regions from SNP 39130 to 39731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,230 DEBUG Processing 174/858 atomic regions from SNP 52056 to 52656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,245 DEBUG Processing 138/474 atomic regions from SNP 41225 to 41825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,278 DEBUG Processing 107/1135 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,313 DEBUG Processing 173/897 atomic regions from SNP 51772 to 52373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,471 DEBUG Processing 139/474 atomic regions from SNP 41525 to 42125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,482 DEBUG Processing 175/858 atomic regions from SNP 52356 to 52956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,494 DEBUG Processing 132/1023 atomic regions from SNP 39431 to 40032 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,542 DEBUG Processing 108/1135 atomic regions from SNP 32207 to 32808 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,553 DEBUG Processing 174/897 atomic regions from SNP 52073 to 52674 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,688 DEBUG Processing 140/474 atomic regions from SNP 41825 to 42425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,726 DEBUG Processing 176/858 atomic regions from SNP 52656 to 53256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,777 DEBUG Processing 133/1023 atomic regions from SNP 39732 to 40333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,789 DEBUG Processing 175/897 atomic regions from SNP 52374 to 52975 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,808 DEBUG Processing 109/1135 atomic regions from SNP 32508 to 33109 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,899 DEBUG Processing 141/474 atomic regions from SNP 42125 to 42725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,978 DEBUG Processing 177/858 atomic regions from SNP 52956 to 53556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,027 DEBUG Processing 176/897 atomic regions from SNP 52675 to 53276 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,039 DEBUG Processing 134/1023 atomic regions from SNP 40033 to 40633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,076 DEBUG Processing 110/1135 atomic regions from SNP 32809 to 33410 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,110 DEBUG Processing 142/474 atomic regions from SNP 42425 to 43025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,214 DEBUG Processing 178/858 atomic regions from SNP 53256 to 53856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,261 DEBUG Processing 177/897 atomic regions from SNP 52976 to 53577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,320 DEBUG Processing 135/1023 atomic regions from SNP 40333 to 40933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,332 DEBUG Processing 143/474 atomic regions from SNP 42725 to 43325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,342 DEBUG Processing 111/1135 atomic regions from SNP 33110 to 33711 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,437 DEBUG Processing 179/858 atomic regions from SNP 53556 to 54156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,493 DEBUG Processing 178/897 atomic regions from SNP 53277 to 53878 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,562 DEBUG Processing 144/474 atomic regions from SNP 43025 to 43625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,605 DEBUG Processing 112/1135 atomic regions from SNP 33411 to 34012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,611 DEBUG Processing 136/1023 atomic regions from SNP 40633 to 41233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,661 DEBUG Processing 180/858 atomic regions from SNP 53856 to 54456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,724 DEBUG Processing 179/897 atomic regions from SNP 53578 to 54179 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,785 DEBUG Processing 145/474 atomic regions from SNP 43325 to 43925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,867 DEBUG Processing 113/1135 atomic regions from SNP 33712 to 34313 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,889 DEBUG Processing 181/858 atomic regions from SNP 54156 to 54756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,898 DEBUG Processing 137/1023 atomic regions from SNP 40933 to 41533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,958 DEBUG Processing 180/897 atomic regions from SNP 53879 to 54480 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,001 DEBUG Processing 146/474 atomic regions from SNP 43625 to 44225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,115 DEBUG Processing 182/858 atomic regions from SNP 54456 to 55056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,126 DEBUG Processing 114/1135 atomic regions from SNP 34013 to 34614 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,186 DEBUG Processing 138/1023 atomic regions from SNP 41233 to 41833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,197 DEBUG Processing 181/897 atomic regions from SNP 54180 to 54781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,216 DEBUG Processing 147/474 atomic regions from SNP 43925 to 44525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,339 DEBUG Processing 183/858 atomic regions from SNP 54756 to 55356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,386 DEBUG Processing 115/1135 atomic regions from SNP 34314 to 34915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,433 DEBUG Processing 182/897 atomic regions from SNP 54481 to 55082 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,435 DEBUG Processing 148/474 atomic regions from SNP 44225 to 44825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,470 DEBUG Processing 139/1023 atomic regions from SNP 41533 to 42133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,555 DEBUG Processing 184/858 atomic regions from SNP 55056 to 55656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,646 DEBUG Processing 116/1135 atomic regions from SNP 34615 to 35216 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,659 DEBUG Processing 149/474 atomic regions from SNP 44525 to 45125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,672 DEBUG Processing 183/897 atomic regions from SNP 54782 to 55383 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,733 DEBUG Processing 140/1023 atomic regions from SNP 41833 to 42433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,780 DEBUG Processing 185/858 atomic regions from SNP 55356 to 55956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,880 DEBUG Processing 150/474 atomic regions from SNP 44825 to 45425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,909 DEBUG Processing 117/1135 atomic regions from SNP 34916 to 35517 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,910 DEBUG Processing 184/897 atomic regions from SNP 55083 to 55684 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,019 DEBUG Processing 141/1023 atomic regions from SNP 42133 to 42733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,025 DEBUG Processing 186/858 atomic regions from SNP 55656 to 56256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,094 DEBUG Processing 151/474 atomic regions from SNP 45125 to 45725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,146 DEBUG Processing 185/897 atomic regions from SNP 55384 to 55985 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,167 DEBUG Processing 118/1135 atomic regions from SNP 35217 to 35818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,283 DEBUG Processing 187/858 atomic regions from SNP 55956 to 56556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,291 DEBUG Processing 142/1023 atomic regions from SNP 42433 to 43033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,311 DEBUG Processing 152/474 atomic regions from SNP 45425 to 46025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,385 DEBUG Processing 186/897 atomic regions from SNP 55685 to 56286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,421 DEBUG Processing 119/1135 atomic regions from SNP 35518 to 36119 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,532 DEBUG Processing 153/474 atomic regions from SNP 45725 to 46325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,537 DEBUG Processing 188/858 atomic regions from SNP 56256 to 56856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,560 DEBUG Processing 143/1023 atomic regions from SNP 42733 to 43333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,622 DEBUG Processing 187/897 atomic regions from SNP 55986 to 56587 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,674 DEBUG Processing 120/1135 atomic regions from SNP 35819 to 36420 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,752 DEBUG Processing 154/474 atomic regions from SNP 46025 to 46625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,766 DEBUG Processing 189/858 atomic regions from SNP 56556 to 57156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,845 DEBUG Processing 144/1023 atomic regions from SNP 43033 to 43633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,857 DEBUG Processing 188/897 atomic regions from SNP 56287 to 56888 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,930 DEBUG Processing 121/1135 atomic regions from SNP 36120 to 36721 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,967 DEBUG Processing 155/474 atomic regions from SNP 46325 to 46925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,986 DEBUG Processing 190/858 atomic regions from SNP 56856 to 57456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,094 DEBUG Processing 189/897 atomic regions from SNP 56588 to 57189 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,128 DEBUG Processing 145/1023 atomic regions from SNP 43333 to 43933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,189 DEBUG Processing 156/474 atomic regions from SNP 46625 to 47225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,194 DEBUG Processing 122/1135 atomic regions from SNP 36421 to 37022 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,210 DEBUG Processing 191/858 atomic regions from SNP 57156 to 57756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,333 DEBUG Processing 190/897 atomic regions from SNP 56889 to 57490 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,409 DEBUG Processing 146/1023 atomic regions from SNP 43633 to 44233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,410 DEBUG Processing 157/474 atomic regions from SNP 46925 to 47525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,433 DEBUG Processing 192/858 atomic regions from SNP 57456 to 58056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,452 DEBUG Processing 123/1135 atomic regions from SNP 36722 to 37323 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,562 DEBUG Processing 191/897 atomic regions from SNP 57190 to 57791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,629 DEBUG Processing 158/474 atomic regions from SNP 47225 to 47825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,660 DEBUG Processing 193/858 atomic regions from SNP 57756 to 58356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,681 DEBUG Processing 147/1023 atomic regions from SNP 43933 to 44533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,708 DEBUG Processing 124/1135 atomic regions from SNP 37023 to 37624 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,793 DEBUG Processing 192/897 atomic regions from SNP 57491 to 58092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,849 DEBUG Processing 159/474 atomic regions from SNP 47525 to 48125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,885 DEBUG Processing 194/858 atomic regions from SNP 58056 to 58656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,955 DEBUG Processing 148/1023 atomic regions from SNP 44233 to 44833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,960 DEBUG Processing 125/1135 atomic regions from SNP 37324 to 37925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,022 DEBUG Processing 193/897 atomic regions from SNP 57792 to 58393 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,063 DEBUG Processing 160/474 atomic regions from SNP 47825 to 48425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,103 DEBUG Processing 195/858 atomic regions from SNP 58356 to 58956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,215 DEBUG Processing 126/1135 atomic regions from SNP 37625 to 38226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,223 DEBUG Processing 149/1023 atomic regions from SNP 44533 to 45133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,248 DEBUG Processing 194/897 atomic regions from SNP 58093 to 58694 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,276 DEBUG Processing 161/474 atomic regions from SNP 48125 to 48725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,323 DEBUG Processing 196/858 atomic regions from SNP 58656 to 59256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,477 DEBUG Processing 127/1135 atomic regions from SNP 37926 to 38527 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,479 DEBUG Processing 195/897 atomic regions from SNP 58394 to 58995 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,493 DEBUG Processing 150/1023 atomic regions from SNP 44833 to 45433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,494 DEBUG Processing 162/474 atomic regions from SNP 48425 to 49025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,540 DEBUG Processing 197/858 atomic regions from SNP 58956 to 59556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,715 DEBUG Processing 196/897 atomic regions from SNP 58695 to 59296 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,718 DEBUG Processing 163/474 atomic regions from SNP 48725 to 49325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,743 DEBUG Processing 128/1135 atomic regions from SNP 38227 to 38828 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,768 DEBUG Processing 198/858 atomic regions from SNP 59256 to 59856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,782 DEBUG Processing 151/1023 atomic regions from SNP 45133 to 45733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,945 DEBUG Processing 164/474 atomic regions from SNP 49025 to 49625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,952 DEBUG Processing 197/897 atomic regions from SNP 58996 to 59597 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,001 DEBUG Processing 129/1135 atomic regions from SNP 38528 to 39129 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,003 DEBUG Processing 199/858 atomic regions from SNP 59556 to 60156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,065 DEBUG Processing 152/1023 atomic regions from SNP 45433 to 46033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,159 DEBUG Processing 165/474 atomic regions from SNP 49325 to 49925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,190 DEBUG Processing 198/897 atomic regions from SNP 59297 to 59898 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,233 DEBUG Processing 200/858 atomic regions from SNP 59856 to 60456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,263 DEBUG Processing 130/1135 atomic regions from SNP 38829 to 39430 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,344 DEBUG Processing 153/1023 atomic regions from SNP 45733 to 46333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,376 DEBUG Processing 166/474 atomic regions from SNP 49625 to 50225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,441 DEBUG Processing 199/897 atomic regions from SNP 59598 to 60199 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,491 DEBUG Processing 201/858 atomic regions from SNP 60156 to 60756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,545 DEBUG Processing 131/1135 atomic regions from SNP 39130 to 39731 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,628 DEBUG Processing 167/474 atomic regions from SNP 49925 to 50525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,667 DEBUG Processing 154/1023 atomic regions from SNP 46033 to 46633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,723 DEBUG Processing 200/897 atomic regions from SNP 59899 to 60500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,782 DEBUG Processing 202/858 atomic regions from SNP 60456 to 61056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,867 DEBUG Processing 168/474 atomic regions from SNP 50225 to 50825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,868 DEBUG Processing 132/1135 atomic regions from SNP 39431 to 40032 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,938 DEBUG Processing 155/1023 atomic regions from SNP 46333 to 46933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,960 DEBUG Processing 201/897 atomic regions from SNP 60200 to 60800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,001 DEBUG Processing 203/858 atomic regions from SNP 60756 to 61356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,091 DEBUG Processing 169/474 atomic regions from SNP 50525 to 51125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,138 DEBUG Processing 133/1135 atomic regions from SNP 39732 to 40333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,191 DEBUG Processing 202/897 atomic regions from SNP 60500 to 61100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,196 DEBUG Processing 156/1023 atomic regions from SNP 46633 to 47233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,216 DEBUG Processing 204/858 atomic regions from SNP 61056 to 61656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,307 DEBUG Processing 170/474 atomic regions from SNP 50825 to 51425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,399 DEBUG Processing 134/1135 atomic regions from SNP 40033 to 40634 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,426 DEBUG Processing 203/897 atomic regions from SNP 60800 to 61400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,435 DEBUG Processing 205/858 atomic regions from SNP 61356 to 61956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,457 DEBUG Processing 157/1023 atomic regions from SNP 46933 to 47533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,521 DEBUG Processing 171/474 atomic regions from SNP 51125 to 51725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,656 DEBUG Processing 206/858 atomic regions from SNP 61656 to 62256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,657 DEBUG Processing 135/1135 atomic regions from SNP 40334 to 40935 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,660 DEBUG Processing 204/897 atomic regions from SNP 61100 to 61700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,730 DEBUG Processing 158/1023 atomic regions from SNP 47233 to 47833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,733 DEBUG Processing 172/474 atomic regions from SNP 51425 to 52025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,878 DEBUG Processing 207/858 atomic regions from SNP 61956 to 62556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,897 DEBUG Processing 205/897 atomic regions from SNP 61400 to 62000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,916 DEBUG Processing 136/1135 atomic regions from SNP 40635 to 41236 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,945 DEBUG Processing 173/474 atomic regions from SNP 51725 to 52325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,010 DEBUG Processing 159/1023 atomic regions from SNP 47533 to 48133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,104 DEBUG Processing 208/858 atomic regions from SNP 62256 to 62856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,134 DEBUG Processing 206/897 atomic regions from SNP 61700 to 62300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,161 DEBUG Processing 174/474 atomic regions from SNP 52025 to 52625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,175 DEBUG Processing 137/1135 atomic regions from SNP 40936 to 41537 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,287 DEBUG Processing 160/1023 atomic regions from SNP 47833 to 48433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,324 DEBUG Processing 209/858 atomic regions from SNP 62556 to 63156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,386 DEBUG Processing 207/897 atomic regions from SNP 62000 to 62600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,396 DEBUG Processing 175/474 atomic regions from SNP 52325 to 52925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,466 DEBUG Processing 138/1135 atomic regions from SNP 41237 to 41838 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,592 DEBUG Processing 210/858 atomic regions from SNP 62856 to 63456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,599 DEBUG Processing 161/1023 atomic regions from SNP 48133 to 48733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,627 DEBUG Processing 176/474 atomic regions from SNP 52625 to 53225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,634 DEBUG Processing 208/897 atomic regions from SNP 62300 to 62900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,724 DEBUG Processing 139/1135 atomic regions from SNP 41538 to 42139 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,822 DEBUG Processing 211/858 atomic regions from SNP 63156 to 63756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,846 DEBUG Processing 177/474 atomic regions from SNP 52925 to 53525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,872 DEBUG Processing 209/897 atomic regions from SNP 62600 to 63200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,885 DEBUG Processing 162/1023 atomic regions from SNP 48433 to 49033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,006 DEBUG Processing 140/1135 atomic regions from SNP 41839 to 42440 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,040 DEBUG Processing 212/858 atomic regions from SNP 63456 to 64056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,059 DEBUG Processing 178/474 atomic regions from SNP 53225 to 53825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,104 DEBUG Processing 210/897 atomic regions from SNP 62900 to 63500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,166 DEBUG Processing 163/1023 atomic regions from SNP 48733 to 49333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,264 DEBUG Processing 213/858 atomic regions from SNP 63756 to 64356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,266 DEBUG Processing 141/1135 atomic regions from SNP 42140 to 42741 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,274 DEBUG Processing 179/474 atomic regions from SNP 53525 to 54125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,332 DEBUG Processing 211/897 atomic regions from SNP 63200 to 63800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,433 DEBUG Processing 164/1023 atomic regions from SNP 49033 to 49633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,489 DEBUG Processing 214/858 atomic regions from SNP 64056 to 64656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,492 DEBUG Processing 180/474 atomic regions from SNP 53825 to 54425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,525 DEBUG Processing 142/1135 atomic regions from SNP 42441 to 43042 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,557 DEBUG Processing 212/897 atomic regions from SNP 63500 to 64100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,707 DEBUG Processing 165/1023 atomic regions from SNP 49333 to 49933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,712 DEBUG Processing 181/474 atomic regions from SNP 54125 to 54725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,714 DEBUG Processing 215/858 atomic regions from SNP 64356 to 64956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,784 DEBUG Processing 143/1135 atomic regions from SNP 42742 to 43343 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,785 DEBUG Processing 213/897 atomic regions from SNP 63800 to 64400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,933 DEBUG Processing 182/474 atomic regions from SNP 54425 to 55025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,942 DEBUG Processing 216/858 atomic regions from SNP 64656 to 65256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,000 DEBUG Processing 166/1023 atomic regions from SNP 49633 to 50233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,011 DEBUG Processing 214/897 atomic regions from SNP 64100 to 64700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,040 DEBUG Processing 144/1135 atomic regions from SNP 43043 to 43644 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,149 DEBUG Processing 183/474 atomic regions from SNP 54725 to 55325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,162 DEBUG Processing 217/858 atomic regions from SNP 64956 to 65556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,238 DEBUG Processing 215/897 atomic regions from SNP 64400 to 65000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,288 DEBUG Processing 167/1023 atomic regions from SNP 49933 to 50533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,304 DEBUG Processing 145/1135 atomic regions from SNP 43344 to 43945 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,351 DEBUG Segmenting atomic regions: 2025-01-31 09:44:18,369 DEBUG Processing 184/474 atomic regions from SNP 55025 to 55625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,385 DEBUG Processing 218/858 atomic regions from SNP 65256 to 65856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,463 DEBUG Processing 216/897 atomic regions from SNP 64700 to 65300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,464 DEBUG Processing 1/648 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,557 DEBUG Processing 168/1023 atomic regions from SNP 50233 to 50833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,563 DEBUG Processing 146/1135 atomic regions from SNP 43645 to 44246 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,585 DEBUG Processing 185/474 atomic regions from SNP 55325 to 55925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,606 DEBUG Processing 219/858 atomic regions from SNP 65556 to 66156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,687 DEBUG Processing 217/897 atomic regions from SNP 65000 to 65600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,707 DEBUG Processing 2/648 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,809 DEBUG Processing 186/474 atomic regions from SNP 55625 to 56225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,827 DEBUG Processing 147/1135 atomic regions from SNP 43946 to 44547 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,829 DEBUG Processing 169/1023 atomic regions from SNP 50533 to 51133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,835 DEBUG Processing 220/858 atomic regions from SNP 65856 to 66456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,912 DEBUG Processing 218/897 atomic regions from SNP 65300 to 65900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,944 DEBUG Processing 3/648 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,029 DEBUG Processing 187/474 atomic regions from SNP 55925 to 56525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,060 DEBUG Processing 221/858 atomic regions from SNP 66156 to 66756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,090 DEBUG Processing 148/1135 atomic regions from SNP 44247 to 44848 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,100 DEBUG Processing 170/1023 atomic regions from SNP 50833 to 51433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,143 DEBUG Processing 219/897 atomic regions from SNP 65600 to 66200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,162 DEBUG Processing 4/648 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,242 DEBUG Processing 188/474 atomic regions from SNP 56225 to 56825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,286 DEBUG Processing 222/858 atomic regions from SNP 66456 to 67056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,352 DEBUG Processing 149/1135 atomic regions from SNP 44548 to 45149 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,379 DEBUG Processing 220/897 atomic regions from SNP 65900 to 66500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,382 DEBUG Processing 171/1023 atomic regions from SNP 51133 to 51733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,415 DEBUG Processing 5/648 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,454 DEBUG Processing 189/474 atomic regions from SNP 56525 to 57125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,504 DEBUG Processing 223/858 atomic regions from SNP 66756 to 67356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,609 DEBUG Processing 150/1135 atomic regions from SNP 44849 to 45450 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,618 DEBUG Processing 221/897 atomic regions from SNP 66200 to 66800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,662 DEBUG Processing 172/1023 atomic regions from SNP 51433 to 52033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,667 DEBUG Processing 190/474 atomic regions from SNP 56825 to 57425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,674 DEBUG Processing 6/648 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,715 DEBUG Processing 224/858 atomic regions from SNP 67056 to 67656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,857 DEBUG Processing 222/897 atomic regions from SNP 66500 to 67100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,868 DEBUG Processing 151/1135 atomic regions from SNP 45150 to 45751 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,890 DEBUG Processing 191/474 atomic regions from SNP 57125 to 57725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,916 DEBUG Processing 7/648 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,935 DEBUG Processing 225/858 atomic regions from SNP 67356 to 67956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,935 DEBUG Processing 173/1023 atomic regions from SNP 51733 to 52333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,097 DEBUG Processing 223/897 atomic regions from SNP 66800 to 67400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,118 DEBUG Processing 192/474 atomic regions from SNP 57425 to 58025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,130 DEBUG Processing 152/1135 atomic regions from SNP 45451 to 46052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,164 DEBUG Processing 226/858 atomic regions from SNP 67656 to 68256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,169 DEBUG Processing 8/648 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,216 DEBUG Processing 174/1023 atomic regions from SNP 52033 to 52633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,339 DEBUG Processing 224/897 atomic regions from SNP 67100 to 67700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,353 DEBUG Processing 193/474 atomic regions from SNP 57725 to 58325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,392 DEBUG Processing 153/1135 atomic regions from SNP 45752 to 46353 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,395 DEBUG Processing 227/858 atomic regions from SNP 67956 to 68556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,427 DEBUG Processing 9/648 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,503 DEBUG Processing 175/1023 atomic regions from SNP 52333 to 52933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,572 DEBUG Processing 225/897 atomic regions from SNP 67400 to 68000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,583 DEBUG Processing 194/474 atomic regions from SNP 58025 to 58625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,624 DEBUG Processing 228/858 atomic regions from SNP 68256 to 68856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,653 DEBUG Processing 154/1135 atomic regions from SNP 46053 to 46654 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,674 DEBUG Processing 10/648 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,787 DEBUG Processing 176/1023 atomic regions from SNP 52633 to 53233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,796 DEBUG Processing 195/474 atomic regions from SNP 58325 to 58925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,803 DEBUG Processing 226/897 atomic regions from SNP 67700 to 68300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,850 DEBUG Processing 229/858 atomic regions from SNP 68556 to 69156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,905 DEBUG Processing 11/648 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,918 DEBUG Processing 155/1135 atomic regions from SNP 46354 to 46955 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,006 DEBUG Processing 196/474 atomic regions from SNP 58625 to 59225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,036 DEBUG Processing 227/897 atomic regions from SNP 68000 to 68600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,065 DEBUG Processing 177/1023 atomic regions from SNP 52933 to 53533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,071 DEBUG Processing 230/858 atomic regions from SNP 68856 to 69456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,132 DEBUG Processing 12/648 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,177 DEBUG Processing 156/1135 atomic regions from SNP 46655 to 47256 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,218 DEBUG Processing 197/474 atomic regions from SNP 58925 to 59525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,263 DEBUG Processing 228/897 atomic regions from SNP 68300 to 68900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,298 DEBUG Processing 231/858 atomic regions from SNP 69156 to 69756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,354 DEBUG Processing 178/1023 atomic regions from SNP 53233 to 53833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,359 DEBUG Processing 13/648 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,436 DEBUG Processing 198/474 atomic regions from SNP 59225 to 59825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,441 DEBUG Processing 157/1135 atomic regions from SNP 46956 to 47557 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,492 DEBUG Processing 229/897 atomic regions from SNP 68600 to 69200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,518 DEBUG Processing 232/858 atomic regions from SNP 69456 to 70056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,592 DEBUG Processing 14/648 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,644 DEBUG Processing 179/1023 atomic regions from SNP 53533 to 54133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,654 DEBUG Processing 199/474 atomic regions from SNP 59525 to 60125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,698 DEBUG Processing 158/1135 atomic regions from SNP 47257 to 47858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,724 DEBUG Processing 230/897 atomic regions from SNP 68900 to 69500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,736 DEBUG Processing 233/858 atomic regions from SNP 69756 to 70356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,848 DEBUG Processing 15/648 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,874 DEBUG Processing 200/474 atomic regions from SNP 59825 to 60425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,917 DEBUG Processing 180/1023 atomic regions from SNP 53833 to 54433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,957 DEBUG Processing 231/897 atomic regions from SNP 69200 to 69800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,960 DEBUG Processing 234/858 atomic regions from SNP 70056 to 70656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,966 DEBUG Processing 159/1135 atomic regions from SNP 47558 to 48159 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,089 DEBUG Processing 16/648 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,092 DEBUG Processing 201/474 atomic regions from SNP 60125 to 60725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,177 DEBUG Processing 181/1023 atomic regions from SNP 54133 to 54733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,185 DEBUG Processing 235/858 atomic regions from SNP 70356 to 70956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,188 DEBUG Processing 232/897 atomic regions from SNP 69500 to 70100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,238 DEBUG Processing 160/1135 atomic regions from SNP 47859 to 48460 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,322 DEBUG Processing 202/474 atomic regions from SNP 60425 to 61025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,329 DEBUG Processing 17/648 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,409 DEBUG Processing 236/858 atomic regions from SNP 70656 to 71256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,421 DEBUG Processing 233/897 atomic regions from SNP 69800 to 70400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,435 DEBUG Processing 182/1023 atomic regions from SNP 54433 to 55033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,498 DEBUG Processing 161/1135 atomic regions from SNP 48160 to 48761 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,560 DEBUG Processing 203/474 atomic regions from SNP 60725 to 61325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,564 DEBUG Processing 18/648 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,628 DEBUG Processing 237/858 atomic regions from SNP 70956 to 71556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,655 DEBUG Processing 234/897 atomic regions from SNP 70100 to 70700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,691 DEBUG Processing 183/1023 atomic regions from SNP 54733 to 55333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,757 DEBUG Processing 162/1135 atomic regions from SNP 48461 to 49062 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,807 DEBUG Processing 19/648 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,808 DEBUG Processing 204/474 atomic regions from SNP 61025 to 61625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,847 DEBUG Processing 238/858 atomic regions from SNP 71256 to 71856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,887 DEBUG Processing 235/897 atomic regions from SNP 70400 to 71000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,948 DEBUG Processing 184/1023 atomic regions from SNP 55033 to 55633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,015 DEBUG Processing 163/1135 atomic regions from SNP 48762 to 49363 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,051 DEBUG Processing 20/648 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,055 DEBUG Processing 205/474 atomic regions from SNP 61325 to 61925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,069 DEBUG Processing 239/858 atomic regions from SNP 71556 to 72156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,121 DEBUG Processing 236/897 atomic regions from SNP 70700 to 71300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,220 DEBUG Processing 185/1023 atomic regions from SNP 55333 to 55933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,274 DEBUG Processing 164/1135 atomic regions from SNP 49063 to 49664 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,296 DEBUG Processing 240/858 atomic regions from SNP 71856 to 72456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,298 DEBUG Processing 21/648 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,309 DEBUG Processing 206/474 atomic regions from SNP 61625 to 62225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,353 DEBUG Processing 237/897 atomic regions from SNP 71000 to 71600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,474 DEBUG Processing 186/1023 atomic regions from SNP 55633 to 56233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,522 DEBUG Processing 241/858 atomic regions from SNP 72156 to 72756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,532 DEBUG Processing 165/1135 atomic regions from SNP 49364 to 49965 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,538 DEBUG Processing 22/648 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,562 DEBUG Processing 207/474 atomic regions from SNP 61925 to 62525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,588 DEBUG Processing 238/897 atomic regions from SNP 71300 to 71900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,723 DEBUG Processing 187/1023 atomic regions from SNP 55933 to 56533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,746 DEBUG Processing 242/858 atomic regions from SNP 72456 to 73056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,781 DEBUG Processing 23/648 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,792 DEBUG Processing 166/1135 atomic regions from SNP 49665 to 50266 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,811 DEBUG Processing 208/474 atomic regions from SNP 62225 to 62825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,819 DEBUG Processing 239/897 atomic regions from SNP 71600 to 72200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,969 DEBUG Processing 243/858 atomic regions from SNP 72756 to 73356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,972 DEBUG Processing 188/1023 atomic regions from SNP 56233 to 56833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,041 DEBUG Processing 24/648 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,047 DEBUG Processing 240/897 atomic regions from SNP 71900 to 72500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,051 DEBUG Processing 167/1135 atomic regions from SNP 49966 to 50567 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,064 DEBUG Processing 209/474 atomic regions from SNP 62525 to 63125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,191 DEBUG Processing 244/858 atomic regions from SNP 73056 to 73656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,221 DEBUG Processing 189/1023 atomic regions from SNP 56533 to 57133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,279 DEBUG Processing 241/897 atomic regions from SNP 72200 to 72800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,286 DEBUG Processing 25/648 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,292 DEBUG Processing 210/474 atomic regions from SNP 62825 to 63425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,311 DEBUG Processing 168/1135 atomic regions from SNP 50267 to 50868 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,415 DEBUG Processing 245/858 atomic regions from SNP 73356 to 73956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,481 DEBUG Processing 190/1023 atomic regions from SNP 56833 to 57433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,511 DEBUG Processing 211/474 atomic regions from SNP 63125 to 63725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,514 DEBUG Processing 242/897 atomic regions from SNP 72500 to 73100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,531 DEBUG Processing 26/648 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,573 DEBUG Processing 169/1135 atomic regions from SNP 50568 to 51169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,638 DEBUG Processing 246/858 atomic regions from SNP 73656 to 74256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,740 DEBUG Processing 212/474 atomic regions from SNP 63425 to 64025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,755 DEBUG Processing 243/897 atomic regions from SNP 72800 to 73400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,764 DEBUG Processing 27/648 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,767 DEBUG Processing 191/1023 atomic regions from SNP 57133 to 57733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,833 DEBUG Processing 170/1135 atomic regions from SNP 50869 to 51470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,857 DEBUG Processing 247/858 atomic regions from SNP 73956 to 74556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,974 DEBUG Processing 213/474 atomic regions from SNP 63725 to 64325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,013 DEBUG Processing 244/897 atomic regions from SNP 73100 to 73700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,030 DEBUG Processing 28/648 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,068 DEBUG Processing 192/1023 atomic regions from SNP 57433 to 58033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,106 DEBUG Processing 171/1135 atomic regions from SNP 51170 to 51771 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,109 DEBUG Processing 248/858 atomic regions from SNP 74256 to 74856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,218 DEBUG Processing 214/474 atomic regions from SNP 64025 to 64625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,280 DEBUG Processing 245/897 atomic regions from SNP 73400 to 74000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,298 DEBUG Processing 29/648 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,387 DEBUG Processing 193/1023 atomic regions from SNP 57733 to 58333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,405 DEBUG Processing 249/858 atomic regions from SNP 74556 to 75156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,425 DEBUG Processing 172/1135 atomic regions from SNP 51471 to 52072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,507 DEBUG Processing 215/474 atomic regions from SNP 64325 to 64925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,549 DEBUG Processing 246/897 atomic regions from SNP 73700 to 74300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,574 DEBUG Processing 30/648 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,705 DEBUG Processing 250/858 atomic regions from SNP 74856 to 75456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,735 DEBUG Processing 194/1023 atomic regions from SNP 58033 to 58633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,748 DEBUG Processing 173/1135 atomic regions from SNP 51772 to 52373 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,822 DEBUG Processing 216/474 atomic regions from SNP 64625 to 65225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,852 DEBUG Processing 247/897 atomic regions from SNP 74000 to 74600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,872 DEBUG Processing 31/648 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,010 DEBUG Processing 251/858 atomic regions from SNP 75156 to 75756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,089 DEBUG Processing 174/1135 atomic regions from SNP 52073 to 52674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,092 DEBUG Processing 217/474 atomic regions from SNP 64925 to 65525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,098 DEBUG Processing 195/1023 atomic regions from SNP 58333 to 58933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,112 DEBUG Processing 248/897 atomic regions from SNP 74300 to 74900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,143 DEBUG Processing 32/648 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,237 DEBUG Processing 252/858 atomic regions from SNP 75456 to 76056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,328 DEBUG Processing 218/474 atomic regions from SNP 65225 to 65825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,356 DEBUG Processing 249/897 atomic regions from SNP 74600 to 75200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,382 DEBUG Processing 196/1023 atomic regions from SNP 58633 to 59233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,389 DEBUG Processing 175/1135 atomic regions from SNP 52374 to 52975 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,405 DEBUG Processing 33/648 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,466 DEBUG Processing 253/858 atomic regions from SNP 75756 to 76356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,539 DEBUG Processing 219/474 atomic regions from SNP 65525 to 66125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,592 DEBUG Processing 250/897 atomic regions from SNP 74900 to 75500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,646 DEBUG Processing 197/1023 atomic regions from SNP 58933 to 59533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,663 DEBUG Processing 34/648 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,681 DEBUG Processing 176/1135 atomic regions from SNP 52675 to 53276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,701 DEBUG Processing 254/858 atomic regions from SNP 76056 to 76656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,749 DEBUG Processing 220/474 atomic regions from SNP 65825 to 66425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,820 DEBUG Processing 251/897 atomic regions from SNP 75200 to 75800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,900 DEBUG Processing 35/648 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,908 DEBUG Processing 198/1023 atomic regions from SNP 59233 to 59833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,942 DEBUG Processing 255/858 atomic regions from SNP 76356 to 76956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,959 DEBUG Processing 177/1135 atomic regions from SNP 52976 to 53577 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,972 DEBUG Processing 221/474 atomic regions from SNP 66125 to 66725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,044 DEBUG Processing 252/897 atomic regions from SNP 75500 to 76100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,154 DEBUG Processing 36/648 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,205 DEBUG Processing 199/1023 atomic regions from SNP 59533 to 60133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,207 DEBUG Processing 256/858 atomic regions from SNP 76656 to 77256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,215 DEBUG Processing 222/474 atomic regions from SNP 66425 to 67025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,250 DEBUG Processing 178/1135 atomic regions from SNP 53277 to 53878 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,277 DEBUG Processing 253/897 atomic regions from SNP 75800 to 76400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,424 DEBUG Processing 37/648 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,528 DEBUG Processing 257/858 atomic regions from SNP 76956 to 77556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,552 DEBUG Processing 223/474 atomic regions from SNP 66725 to 67325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,553 DEBUG Processing 200/1023 atomic regions from SNP 59833 to 60433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,582 DEBUG Processing 254/897 atomic regions from SNP 76100 to 76700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,617 DEBUG Processing 179/1135 atomic regions from SNP 53578 to 54179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,643 DEBUG Processing 38/648 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,764 DEBUG Processing 258/858 atomic regions from SNP 77256 to 77856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,797 DEBUG Processing 224/474 atomic regions from SNP 67025 to 67625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,817 DEBUG Processing 201/1023 atomic regions from SNP 60133 to 60733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,839 DEBUG Processing 255/897 atomic regions from SNP 76400 to 77000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,867 DEBUG Processing 39/648 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,925 DEBUG Processing 180/1135 atomic regions from SNP 53879 to 54480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,991 DEBUG Processing 259/858 atomic regions from SNP 77556 to 78156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,031 DEBUG Processing 225/474 atomic regions from SNP 67325 to 67925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,073 DEBUG Processing 202/1023 atomic regions from SNP 60433 to 61033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,077 DEBUG Processing 256/897 atomic regions from SNP 76700 to 77300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,094 DEBUG Processing 40/648 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,209 DEBUG Processing 181/1135 atomic regions from SNP 54180 to 54781 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,226 DEBUG Processing 260/858 atomic regions from SNP 77856 to 78456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,256 DEBUG Processing 226/474 atomic regions from SNP 67625 to 68225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,318 DEBUG Processing 257/897 atomic regions from SNP 77000 to 77600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,325 DEBUG Processing 41/648 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,334 DEBUG Processing 203/1023 atomic regions from SNP 60733 to 61333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,476 DEBUG Processing 261/858 atomic regions from SNP 78156 to 78756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,494 DEBUG Processing 227/474 atomic regions from SNP 67925 to 68525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,534 DEBUG Processing 182/1135 atomic regions from SNP 54481 to 55082 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,555 DEBUG Processing 42/648 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,558 DEBUG Processing 258/897 atomic regions from SNP 77300 to 77900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,593 DEBUG Processing 204/1023 atomic regions from SNP 61033 to 61633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,718 DEBUG Processing 262/858 atomic regions from SNP 78456 to 79056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,730 DEBUG Processing 228/474 atomic regions from SNP 68225 to 68825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,787 DEBUG Processing 43/648 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,804 DEBUG Processing 259/897 atomic regions from SNP 77600 to 78200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,825 DEBUG Processing 183/1135 atomic regions from SNP 54782 to 55383 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,850 DEBUG Processing 205/1023 atomic regions from SNP 61333 to 61933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,960 DEBUG Processing 263/858 atomic regions from SNP 78756 to 79356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,966 DEBUG Processing 229/474 atomic regions from SNP 68525 to 69125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,021 DEBUG Processing 44/648 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,042 DEBUG Processing 260/897 atomic regions from SNP 77900 to 78500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,091 DEBUG Processing 184/1135 atomic regions from SNP 55083 to 55684 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,108 DEBUG Processing 206/1023 atomic regions from SNP 61633 to 62233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,191 DEBUG Processing 264/858 atomic regions from SNP 79056 to 79656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,194 DEBUG Processing 230/474 atomic regions from SNP 68825 to 69425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,249 DEBUG Processing 45/648 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,278 DEBUG Processing 261/897 atomic regions from SNP 78200 to 78800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,350 DEBUG Processing 185/1135 atomic regions from SNP 55384 to 55985 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,377 DEBUG Processing 207/1023 atomic regions from SNP 61933 to 62533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,422 DEBUG Processing 231/474 atomic regions from SNP 69125 to 69725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,424 DEBUG Processing 265/858 atomic regions from SNP 79356 to 79956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,477 DEBUG Processing 46/648 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,515 DEBUG Processing 262/897 atomic regions from SNP 78500 to 79100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,614 DEBUG Processing 186/1135 atomic regions from SNP 55685 to 56286 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,641 DEBUG Processing 208/1023 atomic regions from SNP 62233 to 62833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,658 DEBUG Processing 232/474 atomic regions from SNP 69425 to 70025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,660 DEBUG Processing 266/858 atomic regions from SNP 79656 to 80256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,701 DEBUG Processing 47/648 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,747 DEBUG Processing 263/897 atomic regions from SNP 78800 to 79400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,879 DEBUG Processing 187/1135 atomic regions from SNP 55986 to 56587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,888 DEBUG Processing 233/474 atomic regions from SNP 69725 to 70325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,896 DEBUG Processing 267/858 atomic regions from SNP 79956 to 80556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,919 DEBUG Processing 209/1023 atomic regions from SNP 62533 to 63133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,930 DEBUG Processing 48/648 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,980 DEBUG Processing 264/897 atomic regions from SNP 79100 to 79700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,122 DEBUG Processing 234/474 atomic regions from SNP 70025 to 70625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,134 DEBUG Processing 268/858 atomic regions from SNP 80256 to 80856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,152 DEBUG Processing 188/1135 atomic regions from SNP 56287 to 56888 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,163 DEBUG Processing 49/648 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,182 DEBUG Processing 210/1023 atomic regions from SNP 62833 to 63433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,212 DEBUG Processing 265/897 atomic regions from SNP 79400 to 80000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,352 DEBUG Processing 235/474 atomic regions from SNP 70325 to 70925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,370 DEBUG Processing 269/858 atomic regions from SNP 80556 to 81156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,396 DEBUG Processing 50/648 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,436 DEBUG Processing 189/1135 atomic regions from SNP 56588 to 57189 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,442 DEBUG Processing 211/1023 atomic regions from SNP 63133 to 63733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,449 DEBUG Processing 266/897 atomic regions from SNP 79700 to 80300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,577 DEBUG Processing 236/474 atomic regions from SNP 70625 to 71225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,600 DEBUG Processing 270/858 atomic regions from SNP 80856 to 81456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,627 DEBUG Processing 51/648 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,698 DEBUG Processing 212/1023 atomic regions from SNP 63433 to 64033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,712 DEBUG Processing 267/897 atomic regions from SNP 80000 to 80600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,728 DEBUG Processing 190/1135 atomic regions from SNP 56889 to 57490 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,798 DEBUG Processing 237/474 atomic regions from SNP 70925 to 71525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,831 DEBUG Processing 271/858 atomic regions from SNP 81156 to 81756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,857 DEBUG Processing 52/648 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,957 DEBUG Processing 213/1023 atomic regions from SNP 63733 to 64333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,977 DEBUG Processing 268/897 atomic regions from SNP 80300 to 80900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,017 DEBUG Processing 191/1135 atomic regions from SNP 57190 to 57791 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,020 DEBUG Processing 238/474 atomic regions from SNP 71225 to 71825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,061 DEBUG Processing 272/858 atomic regions from SNP 81456 to 82056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,088 DEBUG Processing 53/648 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,232 DEBUG Processing 214/1023 atomic regions from SNP 64033 to 64633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,243 DEBUG Processing 269/897 atomic regions from SNP 80600 to 81200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,245 DEBUG Processing 239/474 atomic regions from SNP 71525 to 72125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,293 DEBUG Processing 273/858 atomic regions from SNP 81756 to 82356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,313 DEBUG Processing 192/1135 atomic regions from SNP 57491 to 58092 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,315 DEBUG Processing 54/648 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,466 DEBUG Processing 240/474 atomic regions from SNP 71825 to 72425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,501 DEBUG Processing 215/1023 atomic regions from SNP 64333 to 64933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,510 DEBUG Processing 270/897 atomic regions from SNP 80900 to 81500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,526 DEBUG Processing 274/858 atomic regions from SNP 82056 to 82656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,548 DEBUG Processing 55/648 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,618 DEBUG Processing 193/1135 atomic regions from SNP 57792 to 58393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,684 DEBUG Processing 241/474 atomic regions from SNP 72125 to 72725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,760 DEBUG Processing 275/858 atomic regions from SNP 82356 to 82956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,761 DEBUG Processing 271/897 atomic regions from SNP 81200 to 81800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,777 DEBUG Processing 56/648 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,788 DEBUG Processing 216/1023 atomic regions from SNP 64633 to 65233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,899 DEBUG Processing 242/474 atomic regions from SNP 72425 to 73025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,905 DEBUG Processing 194/1135 atomic regions from SNP 58093 to 58694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,990 DEBUG Processing 276/858 atomic regions from SNP 82656 to 83256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,005 DEBUG Processing 272/897 atomic regions from SNP 81500 to 82100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,010 DEBUG Processing 57/648 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,066 DEBUG Processing 217/1023 atomic regions from SNP 64933 to 65533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,116 DEBUG Processing 243/474 atomic regions from SNP 72725 to 73325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,189 DEBUG Processing 195/1135 atomic regions from SNP 58394 to 58995 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,221 DEBUG Processing 277/858 atomic regions from SNP 82956 to 83556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,240 DEBUG Processing 58/648 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,242 DEBUG Processing 273/897 atomic regions from SNP 81800 to 82400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,327 DEBUG Processing 218/1023 atomic regions from SNP 65233 to 65833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,335 DEBUG Processing 244/474 atomic regions from SNP 73025 to 73625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,449 DEBUG Processing 278/858 atomic regions from SNP 83256 to 83856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,455 DEBUG Processing 196/1135 atomic regions from SNP 58695 to 59296 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,474 DEBUG Processing 59/648 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,479 DEBUG Processing 274/897 atomic regions from SNP 82100 to 82700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,561 DEBUG Processing 245/474 atomic regions from SNP 73325 to 73925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,586 DEBUG Processing 219/1023 atomic regions from SNP 65533 to 66133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,673 DEBUG Processing 279/858 atomic regions from SNP 83556 to 84156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,700 DEBUG Processing 60/648 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,713 DEBUG Processing 275/897 atomic regions from SNP 82400 to 83000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,720 DEBUG Processing 197/1135 atomic regions from SNP 58996 to 59597 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,784 DEBUG Processing 246/474 atomic regions from SNP 73625 to 74225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,841 DEBUG Processing 220/1023 atomic regions from SNP 65833 to 66433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,896 DEBUG Processing 280/858 atomic regions from SNP 83856 to 84456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,921 DEBUG Processing 61/648 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,948 DEBUG Processing 276/897 atomic regions from SNP 82700 to 83300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,996 DEBUG Processing 198/1135 atomic regions from SNP 59297 to 59898 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,006 DEBUG Processing 247/474 atomic regions from SNP 73925 to 74525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,095 DEBUG Processing 221/1023 atomic regions from SNP 66133 to 66733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,131 DEBUG Processing 281/858 atomic regions from SNP 84156 to 84756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,143 DEBUG Processing 62/648 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,187 DEBUG Processing 277/897 atomic regions from SNP 83000 to 83600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,229 DEBUG Processing 248/474 atomic regions from SNP 74225 to 74825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,262 DEBUG Processing 199/1135 atomic regions from SNP 59598 to 60199 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,349 DEBUG Processing 222/1023 atomic regions from SNP 66433 to 67033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,367 DEBUG Processing 63/648 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,368 DEBUG Processing 282/858 atomic regions from SNP 84456 to 85056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,425 DEBUG Processing 278/897 atomic regions from SNP 83300 to 83900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,452 DEBUG Processing 249/474 atomic regions from SNP 74525 to 75125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,527 DEBUG Processing 200/1135 atomic regions from SNP 59899 to 60500 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,592 DEBUG Processing 283/858 atomic regions from SNP 84756 to 85356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,598 DEBUG Processing 64/648 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,600 DEBUG Processing 223/1023 atomic regions from SNP 66733 to 67333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,666 DEBUG Processing 279/897 atomic regions from SNP 83600 to 84200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,674 DEBUG Processing 250/474 atomic regions from SNP 74825 to 75425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,818 DEBUG Processing 284/858 atomic regions from SNP 85056 to 85656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,820 DEBUG Processing 201/1135 atomic regions from SNP 60200 to 60801 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,848 DEBUG Processing 65/648 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,857 DEBUG Processing 224/1023 atomic regions from SNP 67033 to 67633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,901 DEBUG Processing 251/474 atomic regions from SNP 75125 to 75725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,908 DEBUG Processing 280/897 atomic regions from SNP 83900 to 84500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,046 DEBUG Processing 285/858 atomic regions from SNP 85356 to 85956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,077 DEBUG Processing 66/648 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,107 DEBUG Processing 202/1135 atomic regions from SNP 60501 to 61102 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,118 DEBUG Processing 225/1023 atomic regions from SNP 67333 to 67933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,130 DEBUG Processing 252/474 atomic regions from SNP 75425 to 76025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,151 DEBUG Processing 281/897 atomic regions from SNP 84200 to 84800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,266 DEBUG Processing 286/858 atomic regions from SNP 85656 to 86256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,300 DEBUG Processing 67/648 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,354 DEBUG Processing 253/474 atomic regions from SNP 75725 to 76325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,369 DEBUG Processing 203/1135 atomic regions from SNP 60802 to 61403 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,375 DEBUG Processing 226/1023 atomic regions from SNP 67633 to 68233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,392 DEBUG Processing 282/897 atomic regions from SNP 84500 to 85100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,495 DEBUG Processing 287/858 atomic regions from SNP 85956 to 86556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,527 DEBUG Processing 68/648 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,581 DEBUG Processing 254/474 atomic regions from SNP 76025 to 76625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,634 DEBUG Processing 283/897 atomic regions from SNP 84800 to 85400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,639 DEBUG Processing 227/1023 atomic regions from SNP 67933 to 68533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,640 DEBUG Processing 204/1135 atomic regions from SNP 61103 to 61704 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,724 DEBUG Processing 288/858 atomic regions from SNP 86256 to 86856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,756 DEBUG Processing 69/648 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,811 DEBUG Processing 255/474 atomic regions from SNP 76325 to 76925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,875 DEBUG Processing 284/897 atomic regions from SNP 85100 to 85700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,907 DEBUG Processing 228/1023 atomic regions from SNP 68233 to 68833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,914 DEBUG Processing 205/1135 atomic regions from SNP 61404 to 62005 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,953 DEBUG Processing 289/858 atomic regions from SNP 86556 to 87156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,982 DEBUG Processing 70/648 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,032 DEBUG Processing 256/474 atomic regions from SNP 76625 to 77225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,123 DEBUG Processing 285/897 atomic regions from SNP 85400 to 86000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,173 DEBUG Processing 229/1023 atomic regions from SNP 68533 to 69133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,185 DEBUG Processing 206/1135 atomic regions from SNP 61705 to 62306 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,187 DEBUG Processing 290/858 atomic regions from SNP 86856 to 87456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,213 DEBUG Processing 71/648 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,250 DEBUG Processing 257/474 atomic regions from SNP 76925 to 77525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,372 DEBUG Processing 286/897 atomic regions from SNP 85700 to 86300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,426 DEBUG Processing 291/858 atomic regions from SNP 87156 to 87756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,442 DEBUG Processing 230/1023 atomic regions from SNP 68833 to 69433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,448 DEBUG Processing 72/648 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,470 DEBUG Processing 258/474 atomic regions from SNP 77225 to 77825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,475 DEBUG Processing 207/1135 atomic regions from SNP 62006 to 62607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,622 DEBUG Processing 287/897 atomic regions from SNP 86000 to 86600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,666 DEBUG Processing 292/858 atomic regions from SNP 87456 to 88056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,688 DEBUG Processing 73/648 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,700 DEBUG Processing 259/474 atomic regions from SNP 77525 to 78125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,713 DEBUG Processing 231/1023 atomic regions from SNP 69133 to 69733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,761 DEBUG Processing 208/1135 atomic regions from SNP 62307 to 62908 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,868 DEBUG Processing 288/897 atomic regions from SNP 86300 to 86900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,905 DEBUG Processing 293/858 atomic regions from SNP 87756 to 88356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,925 DEBUG Processing 74/648 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,931 DEBUG Processing 260/474 atomic regions from SNP 77825 to 78425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,980 DEBUG Processing 232/1023 atomic regions from SNP 69433 to 70033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,028 DEBUG Processing 209/1135 atomic regions from SNP 62608 to 63209 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,116 DEBUG Processing 289/897 atomic regions from SNP 86600 to 87200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,137 DEBUG Processing 294/858 atomic regions from SNP 88056 to 88656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,159 DEBUG Processing 261/474 atomic regions from SNP 78125 to 78725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,163 DEBUG Processing 75/648 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,244 DEBUG Processing 233/1023 atomic regions from SNP 69733 to 70333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,313 DEBUG Processing 210/1135 atomic regions from SNP 62909 to 63510 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,356 DEBUG Processing 290/897 atomic regions from SNP 86900 to 87500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,366 DEBUG Processing 295/858 atomic regions from SNP 88356 to 88956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,381 DEBUG Processing 262/474 atomic regions from SNP 78425 to 79025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,397 DEBUG Processing 76/648 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,506 DEBUG Processing 234/1023 atomic regions from SNP 70033 to 70633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,590 DEBUG Processing 291/897 atomic regions from SNP 87200 to 87800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,597 DEBUG Processing 296/858 atomic regions from SNP 88656 to 89256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,603 DEBUG Processing 263/474 atomic regions from SNP 78725 to 79325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,618 DEBUG Processing 211/1135 atomic regions from SNP 63210 to 63811 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,624 DEBUG Processing 77/648 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,764 DEBUG Processing 235/1023 atomic regions from SNP 70333 to 70933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,830 DEBUG Processing 297/858 atomic regions from SNP 88956 to 89556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,831 DEBUG Processing 264/474 atomic regions from SNP 79025 to 79625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,835 DEBUG Processing 292/897 atomic regions from SNP 87500 to 88100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,854 DEBUG Processing 78/648 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,904 DEBUG Processing 212/1135 atomic regions from SNP 63511 to 64112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,029 DEBUG Processing 236/1023 atomic regions from SNP 70633 to 71233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,066 DEBUG Processing 265/474 atomic regions from SNP 79325 to 79925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,070 DEBUG Processing 298/858 atomic regions from SNP 89256 to 89856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,079 DEBUG Processing 293/897 atomic regions from SNP 87800 to 88400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,092 DEBUG Processing 79/648 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,169 DEBUG Processing 213/1135 atomic regions from SNP 63812 to 64413 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,296 DEBUG Processing 237/1023 atomic regions from SNP 70933 to 71533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,297 DEBUG Processing 266/474 atomic regions from SNP 79625 to 80225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,306 DEBUG Processing 299/858 atomic regions from SNP 89556 to 90156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,322 DEBUG Processing 294/897 atomic regions from SNP 88100 to 88700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,328 DEBUG Processing 80/648 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,434 DEBUG Processing 214/1135 atomic regions from SNP 64113 to 64714 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,531 DEBUG Processing 267/474 atomic regions from SNP 79925 to 80525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,546 DEBUG Processing 300/858 atomic regions from SNP 89856 to 90456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,563 DEBUG Processing 81/648 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,568 DEBUG Processing 238/1023 atomic regions from SNP 71233 to 71833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,571 DEBUG Processing 295/897 atomic regions from SNP 88400 to 89000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,696 DEBUG Processing 215/1135 atomic regions from SNP 64414 to 65015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,769 DEBUG Processing 268/474 atomic regions from SNP 80225 to 80825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,782 DEBUG Processing 301/858 atomic regions from SNP 90156 to 90756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,797 DEBUG Processing 82/648 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,813 DEBUG Processing 296/897 atomic regions from SNP 88700 to 89300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,837 DEBUG Processing 239/1023 atomic regions from SNP 71533 to 72133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,964 DEBUG Processing 216/1135 atomic regions from SNP 64715 to 65316 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,004 DEBUG Processing 269/474 atomic regions from SNP 80525 to 81125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,021 DEBUG Processing 302/858 atomic regions from SNP 90456 to 91056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,034 DEBUG Processing 83/648 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,056 DEBUG Processing 297/897 atomic regions from SNP 89000 to 89600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,095 DEBUG Processing 240/1023 atomic regions from SNP 71833 to 72433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,232 DEBUG Processing 217/1135 atomic regions from SNP 65016 to 65617 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,238 DEBUG Processing 270/474 atomic regions from SNP 80825 to 81425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,262 DEBUG Processing 303/858 atomic regions from SNP 90756 to 91356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,279 DEBUG Processing 84/648 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,302 DEBUG Processing 298/897 atomic regions from SNP 89300 to 89900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,352 DEBUG Processing 241/1023 atomic regions from SNP 72133 to 72733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,479 DEBUG Processing 271/474 atomic regions from SNP 81125 to 81725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,510 DEBUG Processing 304/858 atomic regions from SNP 91056 to 91656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,511 DEBUG Processing 218/1135 atomic regions from SNP 65317 to 65918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,531 DEBUG Processing 85/648 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,550 DEBUG Processing 299/897 atomic regions from SNP 89600 to 90200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,616 DEBUG Processing 242/1023 atomic regions from SNP 72433 to 73033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,705 DEBUG Processing 272/474 atomic regions from SNP 81425 to 82025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,746 DEBUG Processing 305/858 atomic regions from SNP 91356 to 91956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,770 DEBUG Processing 86/648 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,782 DEBUG Processing 219/1135 atomic regions from SNP 65618 to 66219 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,793 DEBUG Processing 300/897 atomic regions from SNP 89900 to 90500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,870 DEBUG Processing 243/1023 atomic regions from SNP 72733 to 73333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,927 DEBUG Processing 273/474 atomic regions from SNP 81725 to 82325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,978 DEBUG Processing 306/858 atomic regions from SNP 91656 to 92256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,004 DEBUG Processing 87/648 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,039 DEBUG Processing 301/897 atomic regions from SNP 90200 to 90800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,050 DEBUG Processing 220/1135 atomic regions from SNP 65919 to 66520 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,126 DEBUG Processing 244/1023 atomic regions from SNP 73033 to 73633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,152 DEBUG Processing 274/474 atomic regions from SNP 82025 to 82625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,209 DEBUG Processing 307/858 atomic regions from SNP 91956 to 92556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,238 DEBUG Processing 88/648 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,283 DEBUG Processing 302/897 atomic regions from SNP 90500 to 91100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,315 DEBUG Processing 221/1135 atomic regions from SNP 66220 to 66821 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,378 DEBUG Processing 275/474 atomic regions from SNP 82325 to 82925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,383 DEBUG Processing 245/1023 atomic regions from SNP 73333 to 73933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,441 DEBUG Processing 308/858 atomic regions from SNP 92256 to 92856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,466 DEBUG Processing 89/648 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,522 DEBUG Processing 303/897 atomic regions from SNP 90800 to 91400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,572 DEBUG Processing 222/1135 atomic regions from SNP 66521 to 67122 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,602 DEBUG Processing 276/474 atomic regions from SNP 82625 to 83225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,646 DEBUG Processing 246/1023 atomic regions from SNP 73633 to 74233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,678 DEBUG Processing 309/858 atomic regions from SNP 92556 to 93156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,709 DEBUG Processing 90/648 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,761 DEBUG Processing 304/897 atomic regions from SNP 91100 to 91700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,826 DEBUG Processing 277/474 atomic regions from SNP 82925 to 83525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,829 DEBUG Processing 223/1135 atomic regions from SNP 66822 to 67423 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,911 DEBUG Processing 247/1023 atomic regions from SNP 73933 to 74533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,916 DEBUG Processing 310/858 atomic regions from SNP 92856 to 93456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,965 DEBUG Processing 91/648 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,994 DEBUG Processing 305/897 atomic regions from SNP 91400 to 92000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,044 DEBUG Processing 278/474 atomic regions from SNP 83225 to 83825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,090 DEBUG Processing 224/1135 atomic regions from SNP 67123 to 67724 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,160 DEBUG Processing 311/858 atomic regions from SNP 93156 to 93756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,185 DEBUG Processing 248/1023 atomic regions from SNP 74233 to 74833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,202 DEBUG Processing 92/648 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,233 DEBUG Processing 306/897 atomic regions from SNP 91700 to 92300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,268 DEBUG Processing 279/474 atomic regions from SNP 83525 to 84125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,354 DEBUG Processing 225/1135 atomic regions from SNP 67424 to 68025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,401 DEBUG Processing 312/858 atomic regions from SNP 93456 to 94056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,443 DEBUG Processing 93/648 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,453 DEBUG Processing 249/1023 atomic regions from SNP 74533 to 75133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,470 DEBUG Processing 307/897 atomic regions from SNP 92000 to 92600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,490 DEBUG Processing 280/474 atomic regions from SNP 83825 to 84425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,623 DEBUG Processing 226/1135 atomic regions from SNP 67725 to 68326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,641 DEBUG Processing 313/858 atomic regions from SNP 93756 to 94356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,683 DEBUG Processing 94/648 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,708 DEBUG Processing 308/897 atomic regions from SNP 92300 to 92900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,716 DEBUG Processing 281/474 atomic regions from SNP 84125 to 84725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,721 DEBUG Processing 250/1023 atomic regions from SNP 74833 to 75433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,885 DEBUG Processing 314/858 atomic regions from SNP 94056 to 94656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,898 DEBUG Processing 227/1135 atomic regions from SNP 68026 to 68627 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,926 DEBUG Processing 95/648 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,945 DEBUG Processing 309/897 atomic regions from SNP 92600 to 93200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,946 DEBUG Processing 282/474 atomic regions from SNP 84425 to 85025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,991 DEBUG Processing 251/1023 atomic regions from SNP 75133 to 75733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,131 DEBUG Processing 315/858 atomic regions from SNP 94356 to 94956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,171 DEBUG Processing 96/648 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,177 DEBUG Processing 228/1135 atomic regions from SNP 68327 to 68928 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,181 DEBUG Processing 283/474 atomic regions from SNP 84725 to 85325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,183 DEBUG Processing 310/897 atomic regions from SNP 92900 to 93500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,270 DEBUG Processing 252/1023 atomic regions from SNP 75433 to 76033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,372 DEBUG Processing 316/858 atomic regions from SNP 94656 to 95256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,419 DEBUG Processing 284/474 atomic regions from SNP 85025 to 85625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,419 DEBUG Processing 97/648 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,425 DEBUG Processing 311/897 atomic regions from SNP 93200 to 93800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,456 DEBUG Processing 229/1135 atomic regions from SNP 68628 to 69229 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,527 DEBUG Processing 253/1023 atomic regions from SNP 75733 to 76333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,607 DEBUG Processing 317/858 atomic regions from SNP 94956 to 95556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,656 DEBUG Processing 285/474 atomic regions from SNP 85325 to 85925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,657 DEBUG Processing 312/897 atomic regions from SNP 93500 to 94100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,684 DEBUG Processing 98/648 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,732 DEBUG Processing 230/1135 atomic regions from SNP 68929 to 69530 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,789 DEBUG Processing 254/1023 atomic regions from SNP 76033 to 76633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,840 DEBUG Processing 318/858 atomic regions from SNP 95256 to 95856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,886 DEBUG Processing 286/474 atomic regions from SNP 85625 to 86225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,895 DEBUG Processing 313/897 atomic regions from SNP 93800 to 94400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,940 DEBUG Processing 99/648 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,003 DEBUG Processing 231/1135 atomic regions from SNP 69230 to 69831 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,053 DEBUG Processing 255/1023 atomic regions from SNP 76333 to 76933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,074 DEBUG Processing 319/858 atomic regions from SNP 95556 to 96156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,119 DEBUG Processing 287/474 atomic regions from SNP 85925 to 86525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,145 DEBUG Processing 314/897 atomic regions from SNP 94100 to 94700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,187 DEBUG Processing 100/648 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,276 DEBUG Processing 232/1135 atomic regions from SNP 69531 to 70132 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,317 DEBUG Processing 320/858 atomic regions from SNP 95856 to 96456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,327 DEBUG Processing 256/1023 atomic regions from SNP 76633 to 77233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,353 DEBUG Processing 288/474 atomic regions from SNP 86225 to 86825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,391 DEBUG Processing 315/897 atomic regions from SNP 94400 to 95000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,430 DEBUG Processing 101/648 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,557 DEBUG Processing 321/858 atomic regions from SNP 96156 to 96756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,559 DEBUG Processing 233/1135 atomic regions from SNP 69832 to 70433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,586 DEBUG Processing 289/474 atomic regions from SNP 86525 to 87125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,596 DEBUG Processing 257/1023 atomic regions from SNP 76933 to 77533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,642 DEBUG Processing 316/897 atomic regions from SNP 94700 to 95300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,685 DEBUG Processing 102/648 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,793 DEBUG Processing 322/858 atomic regions from SNP 96456 to 97056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,818 DEBUG Processing 290/474 atomic regions from SNP 86825 to 87425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,845 DEBUG Processing 234/1135 atomic regions from SNP 70133 to 70734 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,867 DEBUG Processing 258/1023 atomic regions from SNP 77233 to 77833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,899 DEBUG Processing 317/897 atomic regions from SNP 95000 to 95600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,943 DEBUG Processing 103/648 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,021 DEBUG Processing 323/858 atomic regions from SNP 96756 to 97356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,052 DEBUG Processing 291/474 atomic regions from SNP 87125 to 87725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,119 DEBUG Processing 235/1135 atomic regions from SNP 70434 to 71035 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,139 DEBUG Processing 259/1023 atomic regions from SNP 77533 to 78133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,153 DEBUG Processing 318/897 atomic regions from SNP 95300 to 95900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,183 DEBUG Processing 104/648 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,250 DEBUG Processing 324/858 atomic regions from SNP 97056 to 97656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,273 DEBUG Processing 292/474 atomic regions from SNP 87425 to 88025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,396 DEBUG Processing 236/1135 atomic regions from SNP 70735 to 71336 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,404 DEBUG Processing 319/897 atomic regions from SNP 95600 to 96200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,413 DEBUG Processing 260/1023 atomic regions from SNP 77833 to 78433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,432 DEBUG Processing 105/648 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,491 DEBUG Processing 325/858 atomic regions from SNP 97356 to 97956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,499 DEBUG Processing 293/474 atomic regions from SNP 87725 to 88325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,647 DEBUG Processing 320/897 atomic regions from SNP 95900 to 96500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,672 DEBUG Processing 237/1135 atomic regions from SNP 71036 to 71637 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,678 DEBUG Processing 106/648 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,690 DEBUG Processing 261/1023 atomic regions from SNP 78133 to 78733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,731 DEBUG Processing 294/474 atomic regions from SNP 88025 to 88625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,737 DEBUG Processing 326/858 atomic regions from SNP 97656 to 98256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,885 DEBUG Processing 321/897 atomic regions from SNP 96200 to 96800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,920 DEBUG Processing 107/648 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,950 DEBUG Processing 238/1135 atomic regions from SNP 71337 to 71938 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,965 DEBUG Processing 262/1023 atomic regions from SNP 78433 to 79033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,971 DEBUG Processing 295/474 atomic regions from SNP 88325 to 88925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,980 DEBUG Processing 327/858 atomic regions from SNP 97956 to 98556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,120 DEBUG Processing 322/897 atomic regions from SNP 96500 to 97100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,168 DEBUG Processing 108/648 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,213 DEBUG Processing 296/474 atomic regions from SNP 88625 to 89225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,229 DEBUG Processing 328/858 atomic regions from SNP 98256 to 98856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,241 DEBUG Processing 239/1135 atomic regions from SNP 71638 to 72239 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,244 DEBUG Processing 263/1023 atomic regions from SNP 78733 to 79333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,355 DEBUG Processing 323/897 atomic regions from SNP 96800 to 97400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,427 DEBUG Processing 109/648 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,448 DEBUG Processing 297/474 atomic regions from SNP 88925 to 89525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,477 DEBUG Processing 329/858 atomic regions from SNP 98556 to 99156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,519 DEBUG Processing 264/1023 atomic regions from SNP 79033 to 79633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,548 DEBUG Processing 240/1135 atomic regions from SNP 71939 to 72540 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,593 DEBUG Processing 324/897 atomic regions from SNP 97100 to 97700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,654 DEBUG Processing 110/648 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,672 DEBUG Processing 298/474 atomic regions from SNP 89225 to 89825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,714 DEBUG Processing 330/858 atomic regions from SNP 98856 to 99456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,795 DEBUG Processing 265/1023 atomic regions from SNP 79333 to 79933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,827 DEBUG Processing 241/1135 atomic regions from SNP 72240 to 72841 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,832 DEBUG Processing 325/897 atomic regions from SNP 97400 to 98000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,885 DEBUG Processing 111/648 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,897 DEBUG Processing 299/474 atomic regions from SNP 89525 to 90125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,947 DEBUG Processing 331/858 atomic regions from SNP 99156 to 99756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,067 DEBUG Processing 266/1023 atomic regions from SNP 79633 to 80233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,076 DEBUG Processing 326/897 atomic regions from SNP 97700 to 98300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,105 DEBUG Processing 242/1135 atomic regions from SNP 72541 to 73142 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,125 DEBUG Processing 112/648 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,130 DEBUG Processing 300/474 atomic regions from SNP 89825 to 90425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,178 DEBUG Processing 332/858 atomic regions from SNP 99456 to 100056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,316 DEBUG Processing 327/897 atomic regions from SNP 98000 to 98600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,337 DEBUG Processing 267/1023 atomic regions from SNP 79933 to 80533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,369 DEBUG Processing 113/648 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,369 DEBUG Processing 301/474 atomic regions from SNP 90125 to 90725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,385 DEBUG Processing 243/1135 atomic regions from SNP 72842 to 73443 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,417 DEBUG Processing 333/858 atomic regions from SNP 99756 to 100356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,555 DEBUG Processing 328/897 atomic regions from SNP 98300 to 98900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,607 DEBUG Processing 268/1023 atomic regions from SNP 80233 to 80833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,608 DEBUG Processing 302/474 atomic regions from SNP 90425 to 91025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,611 DEBUG Processing 114/648 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,661 DEBUG Processing 334/858 atomic regions from SNP 100056 to 100656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,664 DEBUG Processing 244/1135 atomic regions from SNP 73143 to 73744 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,794 DEBUG Processing 329/897 atomic regions from SNP 98600 to 99200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,849 DEBUG Processing 115/648 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,855 DEBUG Processing 303/474 atomic regions from SNP 90725 to 91325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,878 DEBUG Processing 269/1023 atomic regions from SNP 80533 to 81133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,907 DEBUG Processing 335/858 atomic regions from SNP 100356 to 100956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,943 DEBUG Processing 245/1135 atomic regions from SNP 73444 to 74045 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,032 DEBUG Processing 330/897 atomic regions from SNP 98900 to 99500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,081 DEBUG Processing 116/648 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,107 DEBUG Processing 304/474 atomic regions from SNP 91025 to 91625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,140 DEBUG Processing 270/1023 atomic regions from SNP 80833 to 81433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,147 DEBUG Processing 336/858 atomic regions from SNP 100656 to 101256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,217 DEBUG Processing 246/1135 atomic regions from SNP 73745 to 74346 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,274 DEBUG Processing 331/897 atomic regions from SNP 99200 to 99800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,314 DEBUG Processing 117/648 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,335 DEBUG Processing 305/474 atomic regions from SNP 91325 to 91925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,385 DEBUG Processing 337/858 atomic regions from SNP 100956 to 101556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,408 DEBUG Processing 271/1023 atomic regions from SNP 81133 to 81733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,487 DEBUG Processing 247/1135 atomic regions from SNP 74046 to 74647 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,515 DEBUG Processing 332/897 atomic regions from SNP 99500 to 100100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,547 DEBUG Processing 118/648 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,564 DEBUG Processing 306/474 atomic regions from SNP 91625 to 92225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,617 DEBUG Processing 338/858 atomic regions from SNP 101256 to 101856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,670 DEBUG Processing 272/1023 atomic regions from SNP 81433 to 82033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,758 DEBUG Processing 248/1135 atomic regions from SNP 74347 to 74948 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,759 DEBUG Processing 333/897 atomic regions from SNP 99800 to 100400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,789 DEBUG Processing 119/648 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,798 DEBUG Processing 307/474 atomic regions from SNP 91925 to 92525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,852 DEBUG Processing 339/858 atomic regions from SNP 101556 to 102156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,930 DEBUG Processing 273/1023 atomic regions from SNP 81733 to 82333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,000 DEBUG Processing 334/897 atomic regions from SNP 100100 to 100700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,026 DEBUG Processing 120/648 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,031 DEBUG Processing 308/474 atomic regions from SNP 92225 to 92825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,046 DEBUG Processing 249/1135 atomic regions from SNP 74648 to 75249 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,090 DEBUG Processing 340/858 atomic regions from SNP 101856 to 102456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,185 DEBUG Processing 274/1023 atomic regions from SNP 82033 to 82633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,237 DEBUG Processing 335/897 atomic regions from SNP 100400 to 101000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,257 DEBUG Processing 121/648 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,258 DEBUG Processing 309/474 atomic regions from SNP 92525 to 93125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,314 DEBUG Processing 250/1135 atomic regions from SNP 74949 to 75550 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,328 DEBUG Processing 341/858 atomic regions from SNP 102156 to 102756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,444 DEBUG Processing 275/1023 atomic regions from SNP 82333 to 82933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,471 DEBUG Processing 336/897 atomic regions from SNP 100700 to 101300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,482 DEBUG Processing 310/474 atomic regions from SNP 92825 to 93425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,485 DEBUG Processing 122/648 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,561 DEBUG Processing 342/858 atomic regions from SNP 102456 to 103056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,582 DEBUG Processing 251/1135 atomic regions from SNP 75250 to 75851 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,705 DEBUG Processing 276/1023 atomic regions from SNP 82633 to 83233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,706 DEBUG Processing 311/474 atomic regions from SNP 93125 to 93725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,710 DEBUG Processing 337/897 atomic regions from SNP 101000 to 101600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,715 DEBUG Processing 123/648 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,788 DEBUG Processing 343/858 atomic regions from SNP 102756 to 103356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,844 DEBUG Processing 252/1135 atomic regions from SNP 75551 to 76152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,938 DEBUG Processing 312/474 atomic regions from SNP 93425 to 94025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,950 DEBUG Processing 124/648 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,954 DEBUG Processing 338/897 atomic regions from SNP 101300 to 101900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,971 DEBUG Processing 277/1023 atomic regions from SNP 82933 to 83533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,018 DEBUG Processing 344/858 atomic regions from SNP 103056 to 103656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,107 DEBUG Processing 253/1135 atomic regions from SNP 75852 to 76453 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,179 DEBUG Processing 313/474 atomic regions from SNP 93725 to 94325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,190 DEBUG Processing 125/648 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,200 DEBUG Processing 339/897 atomic regions from SNP 101600 to 102200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,240 DEBUG Processing 278/1023 atomic regions from SNP 83233 to 83833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,247 DEBUG Processing 345/858 atomic regions from SNP 103356 to 103956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,364 DEBUG Processing 254/1135 atomic regions from SNP 76153 to 76754 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,425 DEBUG Processing 314/474 atomic regions from SNP 94025 to 94625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,431 DEBUG Processing 126/648 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,444 DEBUG Processing 340/897 atomic regions from SNP 101900 to 102500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,487 DEBUG Processing 346/858 atomic regions from SNP 103656 to 104256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,515 DEBUG Processing 279/1023 atomic regions from SNP 83533 to 84133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,645 DEBUG Processing 255/1135 atomic regions from SNP 76454 to 77055 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,681 DEBUG Processing 127/648 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,689 DEBUG Processing 315/474 atomic regions from SNP 94325 to 94925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,691 DEBUG Processing 341/897 atomic regions from SNP 102200 to 102800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,734 DEBUG Processing 347/858 atomic regions from SNP 103956 to 104556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,785 DEBUG Processing 280/1023 atomic regions from SNP 83833 to 84433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,912 DEBUG Processing 256/1135 atomic regions from SNP 76755 to 77356 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,919 DEBUG Processing 128/648 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,935 DEBUG Processing 342/897 atomic regions from SNP 102500 to 103100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,951 DEBUG Processing 316/474 atomic regions from SNP 94625 to 95225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,983 DEBUG Processing 348/858 atomic regions from SNP 104256 to 104856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,054 DEBUG Processing 281/1023 atomic regions from SNP 84133 to 84733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,152 DEBUG Processing 129/648 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,174 DEBUG Processing 343/897 atomic regions from SNP 102800 to 103400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,178 DEBUG Processing 257/1135 atomic regions from SNP 77056 to 77657 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,198 DEBUG Processing 317/474 atomic regions from SNP 94925 to 95525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,227 DEBUG Processing 349/858 atomic regions from SNP 104556 to 105156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,319 DEBUG Processing 282/1023 atomic regions from SNP 84433 to 85033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,387 DEBUG Processing 130/648 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,411 DEBUG Processing 344/897 atomic regions from SNP 103100 to 103700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,447 DEBUG Processing 318/474 atomic regions from SNP 95225 to 95825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,449 DEBUG Processing 258/1135 atomic regions from SNP 77357 to 77958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,464 DEBUG Processing 350/858 atomic regions from SNP 104856 to 105456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,589 DEBUG Processing 283/1023 atomic regions from SNP 84733 to 85333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,628 DEBUG Processing 131/648 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,651 DEBUG Processing 345/897 atomic regions from SNP 103400 to 104000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,693 DEBUG Processing 319/474 atomic regions from SNP 95525 to 96125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,699 DEBUG Processing 351/858 atomic regions from SNP 105156 to 105756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,721 DEBUG Processing 259/1135 atomic regions from SNP 77658 to 78259 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,861 DEBUG Processing 284/1023 atomic regions from SNP 85033 to 85633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,871 DEBUG Processing 132/648 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,891 DEBUG Processing 346/897 atomic regions from SNP 103700 to 104300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,940 DEBUG Processing 352/858 atomic regions from SNP 105456 to 106056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,951 DEBUG Processing 320/474 atomic regions from SNP 95825 to 96425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,992 DEBUG Processing 260/1135 atomic regions from SNP 77959 to 78560 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,110 DEBUG Processing 133/648 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,125 DEBUG Processing 347/897 atomic regions from SNP 104000 to 104600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,128 DEBUG Processing 285/1023 atomic regions from SNP 85333 to 85933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,189 DEBUG Processing 321/474 atomic regions from SNP 96125 to 96725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,197 DEBUG Processing 353/858 atomic regions from SNP 105756 to 106356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,262 DEBUG Processing 261/1135 atomic regions from SNP 78260 to 78861 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,344 DEBUG Processing 134/648 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,365 DEBUG Processing 348/897 atomic regions from SNP 104300 to 104900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,398 DEBUG Processing 286/1023 atomic regions from SNP 85633 to 86233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,436 DEBUG Processing 322/474 atomic regions from SNP 96425 to 97025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,466 DEBUG Processing 354/858 atomic regions from SNP 106056 to 106656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,534 DEBUG Processing 262/1135 atomic regions from SNP 78561 to 79162 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,569 DEBUG Processing 135/648 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,601 DEBUG Processing 349/897 atomic regions from SNP 104600 to 105200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,665 DEBUG Processing 287/1023 atomic regions from SNP 85933 to 86533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,673 DEBUG Processing 323/474 atomic regions from SNP 96725 to 97325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,734 DEBUG Processing 355/858 atomic regions from SNP 106356 to 106956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,801 DEBUG Processing 136/648 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,807 DEBUG Processing 263/1135 atomic regions from SNP 78862 to 79463 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,840 DEBUG Processing 350/897 atomic regions from SNP 104900 to 105500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,906 DEBUG Processing 324/474 atomic regions from SNP 97025 to 97625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,933 DEBUG Processing 288/1023 atomic regions from SNP 86233 to 86833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,002 DEBUG Processing 356/858 atomic regions from SNP 106656 to 107256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,043 DEBUG Processing 137/648 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,078 DEBUG Processing 351/897 atomic regions from SNP 105200 to 105800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,084 DEBUG Processing 264/1135 atomic regions from SNP 79163 to 79764 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,160 DEBUG Processing 325/474 atomic regions from SNP 97325 to 97925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,189 DEBUG Processing 289/1023 atomic regions from SNP 86533 to 87133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,242 DEBUG Processing 357/858 atomic regions from SNP 106956 to 107556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,281 DEBUG Processing 138/648 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,324 DEBUG Processing 352/897 atomic regions from SNP 105500 to 106100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,356 DEBUG Processing 265/1135 atomic regions from SNP 79464 to 80065 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,387 DEBUG Processing 326/474 atomic regions from SNP 97625 to 98225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,446 DEBUG Processing 290/1023 atomic regions from SNP 86833 to 87433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,477 DEBUG Processing 358/858 atomic regions from SNP 107256 to 107856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,520 DEBUG Processing 139/648 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,584 DEBUG Processing 353/897 atomic regions from SNP 105800 to 106400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,617 DEBUG Processing 327/474 atomic regions from SNP 97925 to 98525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,627 DEBUG Processing 266/1135 atomic regions from SNP 79765 to 80366 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,707 DEBUG Processing 291/1023 atomic regions from SNP 87133 to 87733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,712 DEBUG Processing 359/858 atomic regions from SNP 107556 to 108156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,755 DEBUG Processing 140/648 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,824 DEBUG Processing 354/897 atomic regions from SNP 106100 to 106700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,848 DEBUG Processing 328/474 atomic regions from SNP 98225 to 98825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,906 DEBUG Processing 267/1135 atomic regions from SNP 80066 to 80667 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,948 DEBUG Processing 360/858 atomic regions from SNP 107856 to 108456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,972 DEBUG Processing 292/1023 atomic regions from SNP 87433 to 88033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,988 DEBUG Processing 141/648 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,058 DEBUG Processing 355/897 atomic regions from SNP 106400 to 107000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,076 DEBUG Processing 329/474 atomic regions from SNP 98525 to 99125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,178 DEBUG Processing 268/1135 atomic regions from SNP 80367 to 80968 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,186 DEBUG Processing 361/858 atomic regions from SNP 108156 to 108756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,223 DEBUG Processing 142/648 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,238 DEBUG Processing 293/1023 atomic regions from SNP 87733 to 88333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,289 DEBUG Processing 356/897 atomic regions from SNP 106700 to 107300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,297 DEBUG Processing 330/474 atomic regions from SNP 98825 to 99425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,424 DEBUG Processing 362/858 atomic regions from SNP 108456 to 109056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,451 DEBUG Processing 269/1135 atomic regions from SNP 80668 to 81269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,462 DEBUG Processing 143/648 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,507 DEBUG Processing 294/1023 atomic regions from SNP 88033 to 88633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,520 DEBUG Processing 331/474 atomic regions from SNP 99125 to 99725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,526 DEBUG Processing 357/897 atomic regions from SNP 107000 to 107600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,663 DEBUG Processing 363/858 atomic regions from SNP 108756 to 109356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,702 DEBUG Processing 144/648 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,725 DEBUG Processing 270/1135 atomic regions from SNP 80969 to 81570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,748 DEBUG Processing 332/474 atomic regions from SNP 99425 to 100025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,762 DEBUG Processing 358/897 atomic regions from SNP 107300 to 107900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,773 DEBUG Processing 295/1023 atomic regions from SNP 88333 to 88933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,898 DEBUG Processing 364/858 atomic regions from SNP 109056 to 109656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,942 DEBUG Processing 145/648 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,984 DEBUG Processing 333/474 atomic regions from SNP 99725 to 100325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,003 DEBUG Processing 271/1135 atomic regions from SNP 81270 to 81871 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,005 DEBUG Processing 359/897 atomic regions from SNP 107600 to 108200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,052 DEBUG Processing 296/1023 atomic regions from SNP 88633 to 89233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,129 DEBUG Processing 365/858 atomic regions from SNP 109356 to 109956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,177 DEBUG Processing 146/648 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,217 DEBUG Processing 334/474 atomic regions from SNP 100025 to 100625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,246 DEBUG Processing 360/897 atomic regions from SNP 107900 to 108500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,275 DEBUG Processing 272/1135 atomic regions from SNP 81571 to 82172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,322 DEBUG Processing 297/1023 atomic regions from SNP 88933 to 89533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,363 DEBUG Processing 366/858 atomic regions from SNP 109656 to 110256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,409 DEBUG Processing 147/648 atomic regions from SNP 43946 to 44546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,445 DEBUG Processing 335/474 atomic regions from SNP 100325 to 100925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,490 DEBUG Processing 361/897 atomic regions from SNP 108200 to 108800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,544 DEBUG Processing 273/1135 atomic regions from SNP 81872 to 82473 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,588 DEBUG Processing 298/1023 atomic regions from SNP 89233 to 89833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,602 DEBUG Processing 367/858 atomic regions from SNP 109956 to 110556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,649 DEBUG Processing 148/648 atomic regions from SNP 44246 to 44846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,679 DEBUG Processing 336/474 atomic regions from SNP 100625 to 101225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,753 DEBUG Processing 362/897 atomic regions from SNP 108500 to 109100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,813 DEBUG Processing 274/1135 atomic regions from SNP 82173 to 82774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,853 DEBUG Processing 368/858 atomic regions from SNP 110256 to 110856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,862 DEBUG Processing 299/1023 atomic regions from SNP 89533 to 90133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,892 DEBUG Processing 149/648 atomic regions from SNP 44546 to 45146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,920 DEBUG Processing 337/474 atomic regions from SNP 100925 to 101525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,000 DEBUG Processing 363/897 atomic regions from SNP 108800 to 109400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,081 DEBUG Processing 275/1135 atomic regions from SNP 82474 to 83075 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,112 DEBUG Processing 369/858 atomic regions from SNP 110556 to 111156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,135 DEBUG Processing 150/648 atomic regions from SNP 44846 to 45446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,135 DEBUG Processing 300/1023 atomic regions from SNP 89833 to 90433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,158 DEBUG Processing 338/474 atomic regions from SNP 101225 to 101825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,238 DEBUG Processing 364/897 atomic regions from SNP 109100 to 109700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,346 DEBUG Processing 276/1135 atomic regions from SNP 82775 to 83376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,352 DEBUG Processing 370/858 atomic regions from SNP 110856 to 111456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,376 DEBUG Processing 151/648 atomic regions from SNP 45146 to 45746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,395 DEBUG Processing 339/474 atomic regions from SNP 101525 to 102125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,410 DEBUG Processing 301/1023 atomic regions from SNP 90133 to 90733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,482 DEBUG Processing 365/897 atomic regions from SNP 109400 to 110000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,592 DEBUG Processing 371/858 atomic regions from SNP 111156 to 111756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,619 DEBUG Processing 277/1135 atomic regions from SNP 83076 to 83677 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,620 DEBUG Processing 152/648 atomic regions from SNP 45446 to 46046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,637 DEBUG Processing 340/474 atomic regions from SNP 101825 to 102425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,687 DEBUG Processing 302/1023 atomic regions from SNP 90433 to 91033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,730 DEBUG Processing 366/897 atomic regions from SNP 109700 to 110300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,825 DEBUG Processing 372/858 atomic regions from SNP 111456 to 112056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,855 DEBUG Processing 153/648 atomic regions from SNP 45746 to 46346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,873 DEBUG Processing 341/474 atomic regions from SNP 102125 to 102725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,890 DEBUG Processing 278/1135 atomic regions from SNP 83377 to 83978 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,956 DEBUG Processing 303/1023 atomic regions from SNP 90733 to 91333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,979 DEBUG Processing 367/897 atomic regions from SNP 110000 to 110600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,058 DEBUG Processing 373/858 atomic regions from SNP 111756 to 112356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,087 DEBUG Processing 154/648 atomic regions from SNP 46046 to 46646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,108 DEBUG Processing 342/474 atomic regions from SNP 102425 to 103025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,159 DEBUG Processing 279/1135 atomic regions from SNP 83678 to 84279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,222 DEBUG Processing 304/1023 atomic regions from SNP 91033 to 91633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,225 DEBUG Processing 368/897 atomic regions from SNP 110300 to 110900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,290 DEBUG Processing 374/858 atomic regions from SNP 112056 to 112656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,314 DEBUG Processing 155/648 atomic regions from SNP 46346 to 46946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,350 DEBUG Processing 343/474 atomic regions from SNP 102725 to 103325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,421 DEBUG Processing 280/1135 atomic regions from SNP 83979 to 84580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,469 DEBUG Processing 369/897 atomic regions from SNP 110600 to 111200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,485 DEBUG Processing 305/1023 atomic regions from SNP 91333 to 91933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,528 DEBUG Processing 375/858 atomic regions from SNP 112356 to 112956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,549 DEBUG Processing 156/648 atomic regions from SNP 46646 to 47246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,577 DEBUG Processing 344/474 atomic regions from SNP 103025 to 103625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,681 DEBUG Processing 281/1135 atomic regions from SNP 84280 to 84880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,724 DEBUG Processing 370/897 atomic regions from SNP 110900 to 111500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,753 DEBUG Processing 306/1023 atomic regions from SNP 91633 to 92233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,769 DEBUG Processing 376/858 atomic regions from SNP 112656 to 113256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,785 DEBUG Processing 157/648 atomic regions from SNP 46946 to 47546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,819 DEBUG Processing 345/474 atomic regions from SNP 103325 to 103925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,939 DEBUG Processing 282/1135 atomic regions from SNP 84580 to 85180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,979 DEBUG Processing 371/897 atomic regions from SNP 111200 to 111800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,008 DEBUG Processing 377/858 atomic regions from SNP 112956 to 113556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,019 DEBUG Processing 307/1023 atomic regions from SNP 91933 to 92533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,022 DEBUG Processing 158/648 atomic regions from SNP 47246 to 47846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,051 DEBUG Processing 346/474 atomic regions from SNP 103625 to 104225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,199 DEBUG Processing 283/1135 atomic regions from SNP 84880 to 85480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,240 DEBUG Processing 372/897 atomic regions from SNP 111500 to 112100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,247 DEBUG Processing 378/858 atomic regions from SNP 113256 to 113856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,262 DEBUG Processing 159/648 atomic regions from SNP 47546 to 48146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,289 DEBUG Processing 347/474 atomic regions from SNP 103925 to 104525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,292 DEBUG Processing 308/1023 atomic regions from SNP 92233 to 92833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,478 DEBUG Processing 379/858 atomic regions from SNP 113556 to 114156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,482 DEBUG Processing 284/1135 atomic regions from SNP 85180 to 85780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,495 DEBUG Processing 160/648 atomic regions from SNP 47846 to 48446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,499 DEBUG Processing 373/897 atomic regions from SNP 111800 to 112400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,521 DEBUG Processing 348/474 atomic regions from SNP 104225 to 104825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,559 DEBUG Processing 309/1023 atomic regions from SNP 92533 to 93133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,711 DEBUG Processing 380/858 atomic regions from SNP 113856 to 114456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,729 DEBUG Processing 161/648 atomic regions from SNP 48146 to 48746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,734 DEBUG Processing 374/897 atomic regions from SNP 112100 to 112700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,751 DEBUG Processing 349/474 atomic regions from SNP 104525 to 105125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,774 DEBUG Processing 285/1135 atomic regions from SNP 85480 to 86080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,822 DEBUG Processing 310/1023 atomic regions from SNP 92833 to 93433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,938 DEBUG Processing 381/858 atomic regions from SNP 114156 to 114756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,957 DEBUG Processing 162/648 atomic regions from SNP 48446 to 49046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,970 DEBUG Processing 375/897 atomic regions from SNP 112400 to 113000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,975 DEBUG Processing 350/474 atomic regions from SNP 104825 to 105425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,050 DEBUG Processing 286/1135 atomic regions from SNP 85780 to 86380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,076 DEBUG Processing 311/1023 atomic regions from SNP 93133 to 93733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,168 DEBUG Processing 382/858 atomic regions from SNP 114456 to 115056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,184 DEBUG Processing 163/648 atomic regions from SNP 48746 to 49346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,200 DEBUG Processing 376/897 atomic regions from SNP 112700 to 113300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,202 DEBUG Processing 351/474 atomic regions from SNP 105125 to 105725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,328 DEBUG Processing 287/1135 atomic regions from SNP 86080 to 86680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,330 DEBUG Processing 312/1023 atomic regions from SNP 93433 to 94033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,405 DEBUG Processing 383/858 atomic regions from SNP 114756 to 115356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,418 DEBUG Processing 164/648 atomic regions from SNP 49046 to 49646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,430 DEBUG Processing 377/897 atomic regions from SNP 113000 to 113600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,439 DEBUG Processing 352/474 atomic regions from SNP 105425 to 106025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,585 DEBUG Processing 313/1023 atomic regions from SNP 93733 to 94333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,618 DEBUG Processing 288/1135 atomic regions from SNP 86380 to 86980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,643 DEBUG Processing 384/858 atomic regions from SNP 115056 to 115656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,656 DEBUG Processing 165/648 atomic regions from SNP 49346 to 49946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,666 DEBUG Processing 378/897 atomic regions from SNP 113300 to 113900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,676 DEBUG Processing 353/474 atomic regions from SNP 105725 to 106325 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,841 DEBUG Processing 314/1023 atomic regions from SNP 94033 to 94633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,883 DEBUG Processing 385/858 atomic regions from SNP 115356 to 115956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,894 DEBUG Processing 166/648 atomic regions from SNP 49646 to 50246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,900 DEBUG Processing 289/1135 atomic regions from SNP 86680 to 87280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,907 DEBUG Processing 379/897 atomic regions from SNP 113600 to 114200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,910 DEBUG Processing 354/474 atomic regions from SNP 106025 to 106625 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,095 DEBUG Processing 315/1023 atomic regions from SNP 94333 to 94933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,119 DEBUG Processing 386/858 atomic regions from SNP 115656 to 116256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,130 DEBUG Processing 167/648 atomic regions from SNP 49946 to 50546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,147 DEBUG Processing 380/897 atomic regions from SNP 113900 to 114500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,161 DEBUG Processing 355/474 atomic regions from SNP 106325 to 106925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,172 DEBUG Processing 290/1135 atomic regions from SNP 86980 to 87580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,347 DEBUG Processing 316/1023 atomic regions from SNP 94633 to 95233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,349 DEBUG Processing 387/858 atomic regions from SNP 115956 to 116556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,359 DEBUG Processing 168/648 atomic regions from SNP 50246 to 50846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,387 DEBUG Processing 381/897 atomic regions from SNP 114200 to 114800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,419 DEBUG Processing 356/474 atomic regions from SNP 106625 to 107225 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,446 DEBUG Processing 291/1135 atomic regions from SNP 87280 to 87880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,579 DEBUG Processing 388/858 atomic regions from SNP 116256 to 116856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,594 DEBUG Processing 169/648 atomic regions from SNP 50546 to 51146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,613 DEBUG Processing 317/1023 atomic regions from SNP 94933 to 95533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,633 DEBUG Processing 382/897 atomic regions from SNP 114500 to 115100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,681 DEBUG Processing 357/474 atomic regions from SNP 106925 to 107525 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,734 DEBUG Processing 292/1135 atomic regions from SNP 87580 to 88180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,812 DEBUG Processing 389/858 atomic regions from SNP 116556 to 117156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,826 DEBUG Processing 170/648 atomic regions from SNP 50846 to 51446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,867 DEBUG Processing 383/897 atomic regions from SNP 114800 to 115400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,869 DEBUG Processing 318/1023 atomic regions from SNP 95233 to 95833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,909 DEBUG Processing 358/474 atomic regions from SNP 107225 to 107825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,000 DEBUG Processing 293/1135 atomic regions from SNP 87880 to 88480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,049 DEBUG Processing 390/858 atomic regions from SNP 116856 to 117456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,059 DEBUG Processing 171/648 atomic regions from SNP 51146 to 51746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,110 DEBUG Processing 384/897 atomic regions from SNP 115100 to 115700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,132 DEBUG Processing 319/1023 atomic regions from SNP 95533 to 96133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,135 DEBUG Processing 359/474 atomic regions from SNP 107525 to 108125 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,271 DEBUG Processing 294/1135 atomic regions from SNP 88180 to 88780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,290 DEBUG Processing 391/858 atomic regions from SNP 117156 to 117756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,299 DEBUG Processing 172/648 atomic regions from SNP 51446 to 52046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,355 DEBUG Processing 385/897 atomic regions from SNP 115400 to 116000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,370 DEBUG Processing 360/474 atomic regions from SNP 107825 to 108425 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,392 DEBUG Processing 320/1023 atomic regions from SNP 95833 to 96433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,527 DEBUG Processing 392/858 atomic regions from SNP 117456 to 118056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,537 DEBUG Processing 173/648 atomic regions from SNP 51746 to 52346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,542 DEBUG Processing 295/1135 atomic regions from SNP 88480 to 89080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,606 DEBUG Processing 386/897 atomic regions from SNP 115700 to 116300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,634 DEBUG Processing 361/474 atomic regions from SNP 108125 to 108725 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,667 DEBUG Processing 321/1023 atomic regions from SNP 96133 to 96733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,760 DEBUG Processing 393/858 atomic regions from SNP 117756 to 118356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,772 DEBUG Processing 174/648 atomic regions from SNP 52046 to 52646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,812 DEBUG Processing 296/1135 atomic regions from SNP 88780 to 89380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,873 DEBUG Processing 387/897 atomic regions from SNP 116000 to 116600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,911 DEBUG Processing 362/474 atomic regions from SNP 108425 to 109025 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,952 DEBUG Processing 322/1023 atomic regions from SNP 96433 to 97033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,039 DEBUG Processing 394/858 atomic regions from SNP 118056 to 118656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,060 DEBUG Processing 175/648 atomic regions from SNP 52346 to 52946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,134 DEBUG Processing 297/1135 atomic regions from SNP 89080 to 89680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,175 DEBUG Processing 388/897 atomic regions from SNP 116300 to 116900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,207 DEBUG Processing 363/474 atomic regions from SNP 108725 to 109325 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,266 DEBUG Processing 323/1023 atomic regions from SNP 96733 to 97333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,349 DEBUG Processing 395/858 atomic regions from SNP 118356 to 118956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,385 DEBUG Processing 176/648 atomic regions from SNP 52646 to 53246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,485 DEBUG Processing 298/1135 atomic regions from SNP 89380 to 89980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,488 DEBUG Processing 389/897 atomic regions from SNP 116600 to 117200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,522 DEBUG Processing 364/474 atomic regions from SNP 109025 to 109625 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,582 DEBUG Processing 324/1023 atomic regions from SNP 97033 to 97633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,600 DEBUG Processing 396/858 atomic regions from SNP 118656 to 119256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,622 DEBUG Processing 177/648 atomic regions from SNP 52946 to 53546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,739 DEBUG Processing 390/897 atomic regions from SNP 116900 to 117500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,752 DEBUG Processing 365/474 atomic regions from SNP 109325 to 109925 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,757 DEBUG Processing 299/1135 atomic regions from SNP 89680 to 90280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,856 DEBUG Processing 178/648 atomic regions from SNP 53246 to 53846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,857 DEBUG Processing 325/1023 atomic regions from SNP 97333 to 97933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,859 DEBUG Processing 397/858 atomic regions from SNP 118956 to 119556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,968 DEBUG Processing 366/474 atomic regions from SNP 109625 to 110225 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,980 DEBUG Processing 391/897 atomic regions from SNP 117200 to 117800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,014 DEBUG Processing 300/1135 atomic regions from SNP 89980 to 90580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,086 DEBUG Processing 179/648 atomic regions from SNP 53546 to 54146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,102 DEBUG Processing 398/858 atomic regions from SNP 119256 to 119856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,116 DEBUG Processing 326/1023 atomic regions from SNP 97633 to 98233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,182 DEBUG Processing 367/474 atomic regions from SNP 109925 to 110525 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,221 DEBUG Processing 392/897 atomic regions from SNP 117500 to 118100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,281 DEBUG Processing 301/1135 atomic regions from SNP 90280 to 90880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,314 DEBUG Processing 180/648 atomic regions from SNP 53846 to 54446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,353 DEBUG Processing 399/858 atomic regions from SNP 119556 to 120156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,377 DEBUG Processing 327/1023 atomic regions from SNP 97933 to 98533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,430 DEBUG Processing 368/474 atomic regions from SNP 110225 to 110825 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,467 DEBUG Processing 393/897 atomic regions from SNP 117800 to 118400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,540 DEBUG Processing 181/648 atomic regions from SNP 54146 to 54746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,573 DEBUG Processing 302/1135 atomic regions from SNP 90580 to 91180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,603 DEBUG Processing 400/858 atomic regions from SNP 119856 to 120456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,633 DEBUG Processing 328/1023 atomic regions from SNP 98233 to 98833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,687 DEBUG Processing 369/474 atomic regions from SNP 110525 to 111125 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,716 DEBUG Processing 394/897 atomic regions from SNP 118100 to 118700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,768 DEBUG Processing 182/648 atomic regions from SNP 54446 to 55046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,836 DEBUG Processing 401/858 atomic regions from SNP 120156 to 120756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,867 DEBUG Processing 303/1135 atomic regions from SNP 90880 to 91480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,895 DEBUG Processing 329/1023 atomic regions from SNP 98533 to 99133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,921 DEBUG Processing 370/474 atomic regions from SNP 110825 to 111425 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,965 DEBUG Processing 395/897 atomic regions from SNP 118400 to 119000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,998 DEBUG Processing 183/648 atomic regions from SNP 54746 to 55346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,063 DEBUG Processing 402/858 atomic regions from SNP 120456 to 121056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,137 DEBUG Processing 304/1135 atomic regions from SNP 91180 to 91780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,161 DEBUG Processing 330/1023 atomic regions from SNP 98833 to 99433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,185 DEBUG Processing 371/474 atomic regions from SNP 111125 to 111725 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,258 DEBUG Processing 396/897 atomic regions from SNP 118700 to 119300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,277 DEBUG Processing 184/648 atomic regions from SNP 55046 to 55646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,337 DEBUG Processing 403/858 atomic regions from SNP 120756 to 121356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,408 DEBUG Processing 305/1135 atomic regions from SNP 91480 to 92080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,409 DEBUG Processing 372/474 atomic regions from SNP 111425 to 112025 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,429 DEBUG Processing 331/1023 atomic regions from SNP 99133 to 99733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,505 DEBUG Processing 397/897 atomic regions from SNP 119000 to 119600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,513 DEBUG Processing 185/648 atomic regions from SNP 55346 to 55946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,592 DEBUG Processing 404/858 atomic regions from SNP 121056 to 121656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,638 DEBUG Processing 373/474 atomic regions from SNP 111725 to 112325 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,677 DEBUG Processing 306/1135 atomic regions from SNP 91780 to 92380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,693 DEBUG Processing 332/1023 atomic regions from SNP 99433 to 100033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,744 DEBUG Processing 186/648 atomic regions from SNP 55646 to 56246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,750 DEBUG Processing 398/897 atomic regions from SNP 119300 to 119900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,845 DEBUG Processing 405/858 atomic regions from SNP 121356 to 121956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,862 DEBUG Processing 374/474 atomic regions from SNP 112025 to 112625 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,942 DEBUG Processing 307/1135 atomic regions from SNP 92080 to 92680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,954 DEBUG Processing 333/1023 atomic regions from SNP 99733 to 100333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,974 DEBUG Processing 187/648 atomic regions from SNP 55946 to 56546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,992 DEBUG Processing 399/897 atomic regions from SNP 119600 to 120200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,075 DEBUG Processing 406/858 atomic regions from SNP 121656 to 122256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,085 DEBUG Processing 375/474 atomic regions from SNP 112325 to 112925 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,202 DEBUG Processing 308/1135 atomic regions from SNP 92380 to 92980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,203 DEBUG Processing 188/648 atomic regions from SNP 56246 to 56846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,208 DEBUG Processing 334/1023 atomic regions from SNP 100033 to 100633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,232 DEBUG Processing 400/897 atomic regions from SNP 119900 to 120500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,302 DEBUG Processing 407/858 atomic regions from SNP 121956 to 122556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,305 DEBUG Processing 376/474 atomic regions from SNP 112625 to 113225 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,431 DEBUG Processing 189/648 atomic regions from SNP 56546 to 57146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,464 DEBUG Processing 335/1023 atomic regions from SNP 100333 to 100933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,465 DEBUG Processing 309/1135 atomic regions from SNP 92680 to 93280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,473 DEBUG Processing 401/897 atomic regions from SNP 120200 to 120800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,529 DEBUG Processing 408/858 atomic regions from SNP 122256 to 122856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,545 DEBUG Processing 377/474 atomic regions from SNP 112925 to 113525 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,656 DEBUG Processing 190/648 atomic regions from SNP 56846 to 57446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,714 DEBUG Processing 402/897 atomic regions from SNP 120500 to 121100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,721 DEBUG Processing 336/1023 atomic regions from SNP 100633 to 101233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,730 DEBUG Processing 310/1135 atomic regions from SNP 92980 to 93580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,761 DEBUG Processing 409/858 atomic regions from SNP 122556 to 123156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,775 DEBUG Processing 378/474 atomic regions from SNP 113225 to 113825 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,878 DEBUG Processing 191/648 atomic regions from SNP 57146 to 57746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,952 DEBUG Processing 403/897 atomic regions from SNP 120800 to 121400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,976 DEBUG Processing 337/1023 atomic regions from SNP 100933 to 101533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,989 DEBUG Processing 410/858 atomic regions from SNP 122856 to 123456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,991 DEBUG Processing 311/1135 atomic regions from SNP 93280 to 93880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,999 DEBUG Processing 379/474 atomic regions from SNP 113525 to 114125 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,100 DEBUG Processing 192/648 atomic regions from SNP 57446 to 58046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,189 DEBUG Processing 404/897 atomic regions from SNP 121100 to 121700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,222 DEBUG Processing 411/858 atomic regions from SNP 123156 to 123756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,225 DEBUG Processing 380/474 atomic regions from SNP 113825 to 114425 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,235 DEBUG Processing 338/1023 atomic regions from SNP 101233 to 101833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,258 DEBUG Processing 312/1135 atomic regions from SNP 93580 to 94180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,322 DEBUG Processing 193/648 atomic regions from SNP 57746 to 58346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,427 DEBUG Processing 405/897 atomic regions from SNP 121400 to 122000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,456 DEBUG Processing 381/474 atomic regions from SNP 114125 to 114725 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,458 DEBUG Processing 412/858 atomic regions from SNP 123456 to 124056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,504 DEBUG Processing 339/1023 atomic regions from SNP 101533 to 102133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,528 DEBUG Processing 313/1135 atomic regions from SNP 93880 to 94480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,550 DEBUG Processing 194/648 atomic regions from SNP 58046 to 58646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,665 DEBUG Processing 406/897 atomic regions from SNP 121700 to 122300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,692 DEBUG Processing 413/858 atomic regions from SNP 123756 to 124356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,693 DEBUG Processing 382/474 atomic regions from SNP 114425 to 115025 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,768 DEBUG Processing 340/1023 atomic regions from SNP 101833 to 102433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,783 DEBUG Processing 195/648 atomic regions from SNP 58346 to 58946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,798 DEBUG Processing 314/1135 atomic regions from SNP 94180 to 94780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,901 DEBUG Processing 407/897 atomic regions from SNP 122000 to 122600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,923 DEBUG Processing 414/858 atomic regions from SNP 124056 to 124656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,943 DEBUG Processing 383/474 atomic regions from SNP 114725 to 115325 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,021 DEBUG Processing 196/648 atomic regions from SNP 58646 to 59246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,034 DEBUG Processing 341/1023 atomic regions from SNP 102133 to 102733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,072 DEBUG Processing 315/1135 atomic regions from SNP 94480 to 95080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,142 DEBUG Processing 408/897 atomic regions from SNP 122300 to 122900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,148 DEBUG Processing 415/858 atomic regions from SNP 124356 to 124956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,166 DEBUG Processing 384/474 atomic regions from SNP 115025 to 115625 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,258 DEBUG Processing 197/648 atomic regions from SNP 58946 to 59546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,299 DEBUG Processing 342/1023 atomic regions from SNP 102433 to 103033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,342 DEBUG Processing 316/1135 atomic regions from SNP 94780 to 95380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,376 DEBUG Processing 416/858 atomic regions from SNP 124656 to 125256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,382 DEBUG Processing 409/897 atomic regions from SNP 122600 to 123200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,388 DEBUG Processing 385/474 atomic regions from SNP 115325 to 115925 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,501 DEBUG Processing 198/648 atomic regions from SNP 59246 to 59846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,565 DEBUG Processing 343/1023 atomic regions from SNP 102733 to 103333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,610 DEBUG Processing 417/858 atomic regions from SNP 124956 to 125556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,611 DEBUG Processing 317/1135 atomic regions from SNP 95080 to 95680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,624 DEBUG Processing 386/474 atomic regions from SNP 115625 to 116225 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,636 DEBUG Processing 410/897 atomic regions from SNP 122900 to 123500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,732 DEBUG Processing 199/648 atomic regions from SNP 59546 to 60146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,828 DEBUG Processing 344/1023 atomic regions from SNP 103033 to 103633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,856 DEBUG Processing 418/858 atomic regions from SNP 125256 to 125856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,868 DEBUG Processing 387/474 atomic regions from SNP 115925 to 116525 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,891 DEBUG Processing 318/1135 atomic regions from SNP 95380 to 95980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,894 DEBUG Processing 411/897 atomic regions from SNP 123200 to 123800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,962 DEBUG Processing 200/648 atomic regions from SNP 59846 to 60446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,105 DEBUG Processing 345/1023 atomic regions from SNP 103333 to 103933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,109 DEBUG Processing 419/858 atomic regions from SNP 125556 to 126156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,111 DEBUG Processing 388/474 atomic regions from SNP 116225 to 116825 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,169 DEBUG Processing 412/897 atomic regions from SNP 123500 to 124100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,188 DEBUG Processing 319/1135 atomic regions from SNP 95680 to 96280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,198 DEBUG Processing 201/648 atomic regions from SNP 60146 to 60746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,340 DEBUG Processing 389/474 atomic regions from SNP 116525 to 117125 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,344 DEBUG Processing 420/858 atomic regions from SNP 125856 to 126456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,366 DEBUG Processing 346/1023 atomic regions from SNP 103633 to 104233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,419 DEBUG Processing 413/897 atomic regions from SNP 123800 to 124400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,427 DEBUG Processing 202/648 atomic regions from SNP 60446 to 61046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,461 DEBUG Processing 320/1135 atomic regions from SNP 95980 to 96580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,558 DEBUG Processing 390/474 atomic regions from SNP 116825 to 117425 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,570 DEBUG Processing 421/858 atomic regions from SNP 126156 to 126756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,623 DEBUG Processing 347/1023 atomic regions from SNP 103933 to 104533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,655 DEBUG Processing 203/648 atomic regions from SNP 60746 to 61346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,661 DEBUG Processing 414/897 atomic regions from SNP 124100 to 124700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,727 DEBUG Processing 321/1135 atomic regions from SNP 96280 to 96880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,774 DEBUG Processing 391/474 atomic regions from SNP 117125 to 117725 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,808 DEBUG Processing 422/858 atomic regions from SNP 126456 to 127056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,878 DEBUG Processing 348/1023 atomic regions from SNP 104233 to 104833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,882 DEBUG Processing 204/648 atomic regions from SNP 61046 to 61646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,900 DEBUG Processing 415/897 atomic regions from SNP 124400 to 125000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,997 DEBUG Processing 392/474 atomic regions from SNP 117425 to 118025 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,014 DEBUG Processing 322/1135 atomic regions from SNP 96580 to 97180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,063 DEBUG Processing 423/858 atomic regions from SNP 126756 to 127356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,112 DEBUG Processing 205/648 atomic regions from SNP 61346 to 61946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,141 DEBUG Processing 349/1023 atomic regions from SNP 104533 to 105133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,142 DEBUG Processing 416/897 atomic regions from SNP 124700 to 125300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,226 DEBUG Processing 393/474 atomic regions from SNP 117725 to 118325 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,300 DEBUG Processing 323/1135 atomic regions from SNP 96880 to 97480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,318 DEBUG Processing 424/858 atomic regions from SNP 127056 to 127656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,344 DEBUG Processing 206/648 atomic regions from SNP 61646 to 62246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,383 DEBUG Processing 417/897 atomic regions from SNP 125000 to 125600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,402 DEBUG Processing 350/1023 atomic regions from SNP 104833 to 105433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,452 DEBUG Processing 394/474 atomic regions from SNP 118025 to 118625 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,561 DEBUG Processing 425/858 atomic regions from SNP 127356 to 127956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,584 DEBUG Processing 207/648 atomic regions from SNP 61946 to 62546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,594 DEBUG Processing 324/1135 atomic regions from SNP 97180 to 97780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,638 DEBUG Processing 418/897 atomic regions from SNP 125300 to 125900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,667 DEBUG Processing 351/1023 atomic regions from SNP 105133 to 105733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,702 DEBUG Processing 395/474 atomic regions from SNP 118325 to 118925 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,796 DEBUG Processing 426/858 atomic regions from SNP 127656 to 128256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,817 DEBUG Processing 208/648 atomic regions from SNP 62246 to 62846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,874 DEBUG Processing 325/1135 atomic regions from SNP 97480 to 98080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,884 DEBUG Processing 419/897 atomic regions from SNP 125600 to 126200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,940 DEBUG Processing 352/1023 atomic regions from SNP 105433 to 106033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,959 DEBUG Processing 396/474 atomic regions from SNP 118625 to 119225 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,050 DEBUG Processing 427/858 atomic regions from SNP 127956 to 128556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,062 DEBUG Processing 209/648 atomic regions from SNP 62546 to 63146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,129 DEBUG Processing 420/897 atomic regions from SNP 125900 to 126500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,157 DEBUG Processing 326/1135 atomic regions from SNP 97780 to 98380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,177 DEBUG Processing 397/474 atomic regions from SNP 118925 to 119525 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,193 DEBUG Processing 353/1023 atomic regions from SNP 105733 to 106333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,285 DEBUG Processing 428/858 atomic regions from SNP 128256 to 128856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,294 DEBUG Processing 210/648 atomic regions from SNP 62846 to 63446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,370 DEBUG Processing 421/897 atomic regions from SNP 126200 to 126800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,395 DEBUG Processing 398/474 atomic regions from SNP 119225 to 119825 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,444 DEBUG Processing 354/1023 atomic regions from SNP 106033 to 106633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,451 DEBUG Processing 327/1135 atomic regions from SNP 98080 to 98680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,506 DEBUG Processing 429/858 atomic regions from SNP 128556 to 129156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,515 DEBUG Processing 211/648 atomic regions from SNP 63146 to 63746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,612 DEBUG Processing 422/897 atomic regions from SNP 126500 to 127100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,620 DEBUG Processing 399/474 atomic regions from SNP 119525 to 120125 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,700 DEBUG Processing 355/1023 atomic regions from SNP 106333 to 106933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,731 DEBUG Processing 430/858 atomic regions from SNP 128856 to 129456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,740 DEBUG Processing 212/648 atomic regions from SNP 63446 to 64046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,749 DEBUG Processing 328/1135 atomic regions from SNP 98380 to 98980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,848 DEBUG Processing 400/474 atomic regions from SNP 119825 to 120425 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,852 DEBUG Processing 423/897 atomic regions from SNP 126800 to 127400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,960 DEBUG Processing 431/858 atomic regions from SNP 129156 to 129756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,962 DEBUG Processing 356/1023 atomic regions from SNP 106633 to 107233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,970 DEBUG Processing 213/648 atomic regions from SNP 63746 to 64346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,046 DEBUG Processing 329/1135 atomic regions from SNP 98680 to 99280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,067 DEBUG Processing 401/474 atomic regions from SNP 120125 to 120725 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,087 DEBUG Processing 424/897 atomic regions from SNP 127100 to 127700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,193 DEBUG Processing 432/858 atomic regions from SNP 129456 to 130056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,201 DEBUG Processing 214/648 atomic regions from SNP 64046 to 64646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,224 DEBUG Processing 357/1023 atomic regions from SNP 106933 to 107533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,287 DEBUG Processing 402/474 atomic regions from SNP 120425 to 121025 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,319 DEBUG Processing 425/897 atomic regions from SNP 127400 to 128000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,330 DEBUG Processing 330/1135 atomic regions from SNP 98980 to 99580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,421 DEBUG Processing 433/858 atomic regions from SNP 129756 to 130356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,429 DEBUG Processing 215/648 atomic regions from SNP 64346 to 64946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,481 DEBUG Processing 358/1023 atomic regions from SNP 107233 to 107833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,507 DEBUG Processing 403/474 atomic regions from SNP 120725 to 121325 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,559 DEBUG Processing 426/897 atomic regions from SNP 127700 to 128300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,610 DEBUG Processing 331/1135 atomic regions from SNP 99280 to 99880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,645 DEBUG Processing 434/858 atomic regions from SNP 130056 to 130656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,653 DEBUG Processing 216/648 atomic regions from SNP 64646 to 65246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,727 DEBUG Processing 404/474 atomic regions from SNP 121025 to 121625 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,737 DEBUG Processing 359/1023 atomic regions from SNP 107533 to 108133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,795 DEBUG Processing 427/897 atomic regions from SNP 128000 to 128600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,871 DEBUG Processing 435/858 atomic regions from SNP 130356 to 130956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,881 DEBUG Processing 217/648 atomic regions from SNP 64946 to 65546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,902 DEBUG Processing 332/1135 atomic regions from SNP 99580 to 100180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,954 DEBUG Processing 405/474 atomic regions from SNP 121325 to 121925 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,997 DEBUG Processing 360/1023 atomic regions from SNP 107833 to 108433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,042 DEBUG Processing 428/897 atomic regions from SNP 128300 to 128900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,098 DEBUG Processing 436/858 atomic regions from SNP 130656 to 131256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,107 DEBUG Processing 218/648 atomic regions from SNP 65246 to 65846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,181 DEBUG Processing 406/474 atomic regions from SNP 121625 to 122225 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,191 DEBUG Processing 333/1135 atomic regions from SNP 99880 to 100480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,254 DEBUG Processing 361/1023 atomic regions from SNP 108133 to 108733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,291 DEBUG Processing 429/897 atomic regions from SNP 128600 to 129200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,324 DEBUG Processing 437/858 atomic regions from SNP 130956 to 131556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,331 DEBUG Processing 219/648 atomic regions from SNP 65546 to 66146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,401 DEBUG Processing 407/474 atomic regions from SNP 121925 to 122525 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,453 DEBUG Processing 334/1135 atomic regions from SNP 100180 to 100780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,514 DEBUG Processing 362/1023 atomic regions from SNP 108433 to 109033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,599 DEBUG Processing 438/858 atomic regions from SNP 131256 to 131856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,611 DEBUG Processing 430/897 atomic regions from SNP 128900 to 129500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,612 DEBUG Processing 220/648 atomic regions from SNP 65846 to 66446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,667 DEBUG Processing 408/474 atomic regions from SNP 122225 to 122825 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,743 DEBUG Processing 335/1135 atomic regions from SNP 100480 to 101080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,805 DEBUG Processing 363/1023 atomic regions from SNP 108733 to 109333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,926 DEBUG Processing 439/858 atomic regions from SNP 131556 to 132156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,944 DEBUG Processing 431/897 atomic regions from SNP 129200 to 129800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,954 DEBUG Processing 221/648 atomic regions from SNP 66146 to 66746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,014 DEBUG Processing 409/474 atomic regions from SNP 122525 to 123125 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,080 DEBUG Processing 336/1135 atomic regions from SNP 100780 to 101380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,131 DEBUG Processing 364/1023 atomic regions from SNP 109033 to 109633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,274 DEBUG Processing 440/858 atomic regions from SNP 131856 to 132456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,311 DEBUG Processing 222/648 atomic regions from SNP 66446 to 67046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,313 DEBUG Processing 432/897 atomic regions from SNP 129500 to 130100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,363 DEBUG Processing 410/474 atomic regions from SNP 122825 to 123425 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,414 DEBUG Processing 337/1135 atomic regions from SNP 101080 to 101680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,435 DEBUG Processing 365/1023 atomic regions from SNP 109333 to 109933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,500 DEBUG Processing 441/858 atomic regions from SNP 132156 to 132756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,565 DEBUG Processing 223/648 atomic regions from SNP 66746 to 67346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,580 DEBUG Processing 433/897 atomic regions from SNP 129800 to 130400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,642 DEBUG Processing 411/474 atomic regions from SNP 123125 to 123725 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,739 DEBUG Processing 338/1135 atomic regions from SNP 101380 to 101980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,749 DEBUG Processing 366/1023 atomic regions from SNP 109633 to 110233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,765 DEBUG Processing 442/858 atomic regions from SNP 132456 to 133056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,829 DEBUG Processing 224/648 atomic regions from SNP 67046 to 67646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,844 DEBUG Processing 434/897 atomic regions from SNP 130100 to 130700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,871 DEBUG Processing 412/474 atomic regions from SNP 123425 to 124025 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,002 DEBUG Processing 443/858 atomic regions from SNP 132756 to 133356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,003 DEBUG Processing 339/1135 atomic regions from SNP 101680 to 102280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,012 DEBUG Processing 367/1023 atomic regions from SNP 109933 to 110533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,059 DEBUG Processing 225/648 atomic regions from SNP 67346 to 67946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,092 DEBUG Processing 435/897 atomic regions from SNP 130400 to 131000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,097 DEBUG Processing 413/474 atomic regions from SNP 123725 to 124325 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,233 DEBUG Processing 444/858 atomic regions from SNP 133056 to 133656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,270 DEBUG Processing 340/1135 atomic regions from SNP 101980 to 102580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,271 DEBUG Processing 368/1023 atomic regions from SNP 110233 to 110833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,299 DEBUG Processing 226/648 atomic regions from SNP 67646 to 68246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,321 DEBUG Processing 414/474 atomic regions from SNP 124025 to 124625 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,339 DEBUG Processing 436/897 atomic regions from SNP 130700 to 131300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,458 DEBUG Processing 445/858 atomic regions from SNP 133356 to 133956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,534 DEBUG Processing 369/1023 atomic regions from SNP 110533 to 111133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,536 DEBUG Processing 341/1135 atomic regions from SNP 102280 to 102880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,545 DEBUG Processing 227/648 atomic regions from SNP 67946 to 68546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,550 DEBUG Processing 415/474 atomic regions from SNP 124325 to 124925 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,589 DEBUG Processing 437/897 atomic regions from SNP 131000 to 131600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,682 DEBUG Processing 446/858 atomic regions from SNP 133656 to 134256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,776 DEBUG Processing 416/474 atomic regions from SNP 124625 to 125225 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,777 DEBUG Processing 228/648 atomic regions from SNP 68246 to 68846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,794 DEBUG Processing 370/1023 atomic regions from SNP 110833 to 111433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,804 DEBUG Processing 342/1135 atomic regions from SNP 102580 to 103180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,842 DEBUG Processing 438/897 atomic regions from SNP 131300 to 131900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,911 DEBUG Processing 447/858 atomic regions from SNP 133956 to 134556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,035 DEBUG Processing 229/648 atomic regions from SNP 68546 to 69146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,040 DEBUG Processing 417/474 atomic regions from SNP 124925 to 125525 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,105 DEBUG Processing 371/1023 atomic regions from SNP 111133 to 111733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,134 DEBUG Processing 343/1135 atomic regions from SNP 102880 to 103480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,150 DEBUG Processing 439/897 atomic regions from SNP 131600 to 132200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,195 DEBUG Processing 448/858 atomic regions from SNP 134256 to 134856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,313 DEBUG Processing 418/474 atomic regions from SNP 125225 to 125825 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,318 DEBUG Processing 230/648 atomic regions from SNP 68846 to 69446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,461 DEBUG Processing 372/1023 atomic regions from SNP 111433 to 112033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,512 DEBUG Processing 440/897 atomic regions from SNP 131900 to 132500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,519 DEBUG Processing 344/1135 atomic regions from SNP 103180 to 103780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,559 DEBUG Processing 449/858 atomic regions from SNP 134556 to 135156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,612 DEBUG Processing 419/474 atomic regions from SNP 125525 to 126125 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,625 DEBUG Processing 231/648 atomic regions from SNP 69146 to 69746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,713 DEBUG Processing 373/1023 atomic regions from SNP 111733 to 112333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,772 DEBUG Processing 441/897 atomic regions from SNP 132200 to 132800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,803 DEBUG Processing 345/1135 atomic regions from SNP 103480 to 104080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,830 DEBUG Processing 450/858 atomic regions from SNP 134856 to 135456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,907 DEBUG Processing 420/474 atomic regions from SNP 125825 to 126425 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,912 DEBUG Processing 232/648 atomic regions from SNP 69446 to 70046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,990 DEBUG Processing 374/1023 atomic regions from SNP 112033 to 112633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,035 DEBUG Processing 442/897 atomic regions from SNP 132500 to 133100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,072 DEBUG Processing 451/858 atomic regions from SNP 135156 to 135756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,089 DEBUG Processing 346/1135 atomic regions from SNP 103780 to 104380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,206 DEBUG Processing 421/474 atomic regions from SNP 126125 to 126725 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,218 DEBUG Processing 233/648 atomic regions from SNP 69746 to 70346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,287 DEBUG Processing 443/897 atomic regions from SNP 132800 to 133400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,295 DEBUG Processing 375/1023 atomic regions from SNP 112333 to 112933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,313 DEBUG Processing 452/858 atomic regions from SNP 135456 to 136056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,354 DEBUG Processing 347/1135 atomic regions from SNP 104080 to 104680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,422 DEBUG Processing 422/474 atomic regions from SNP 126425 to 127025 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,445 DEBUG Processing 234/648 atomic regions from SNP 70046 to 70646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,565 DEBUG Processing 444/897 atomic regions from SNP 133100 to 133700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,570 DEBUG Processing 453/858 atomic regions from SNP 135756 to 136356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,590 DEBUG Processing 376/1023 atomic regions from SNP 112633 to 113233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,638 DEBUG Processing 423/474 atomic regions from SNP 126725 to 127325 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,654 DEBUG Processing 348/1135 atomic regions from SNP 104380 to 104980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,664 DEBUG Processing 235/648 atomic regions from SNP 70346 to 70946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,811 DEBUG Processing 454/858 atomic regions from SNP 136056 to 136656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,819 DEBUG Processing 445/897 atomic regions from SNP 133400 to 134000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,854 DEBUG Processing 377/1023 atomic regions from SNP 112933 to 113533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,873 DEBUG Processing 424/474 atomic regions from SNP 127025 to 127625 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,908 DEBUG Processing 236/648 atomic regions from SNP 70646 to 71246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,964 DEBUG Processing 349/1135 atomic regions from SNP 104680 to 105280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,045 DEBUG Processing 455/858 atomic regions from SNP 136356 to 136956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,064 DEBUG Processing 446/897 atomic regions from SNP 133700 to 134300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,106 DEBUG Processing 425/474 atomic regions from SNP 127325 to 127925 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,121 DEBUG Processing 378/1023 atomic regions from SNP 113233 to 113833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,141 DEBUG Processing 237/648 atomic regions from SNP 70946 to 71546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,256 DEBUG Processing 350/1135 atomic regions from SNP 104980 to 105580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,277 DEBUG Processing 456/858 atomic regions from SNP 136656 to 137256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,317 DEBUG Processing 447/897 atomic regions from SNP 134000 to 134600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,394 DEBUG Processing 426/474 atomic regions from SNP 127625 to 128225 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,436 DEBUG Processing 238/648 atomic regions from SNP 71246 to 71846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,444 DEBUG Processing 379/1023 atomic regions from SNP 113533 to 114133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,566 DEBUG Processing 457/858 atomic regions from SNP 136956 to 137556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,587 DEBUG Processing 448/897 atomic regions from SNP 134300 to 134900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,618 DEBUG Processing 351/1135 atomic regions from SNP 105280 to 105880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,702 DEBUG Processing 427/474 atomic regions from SNP 127925 to 128525 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,758 DEBUG Processing 239/648 atomic regions from SNP 71546 to 72146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,779 DEBUG Processing 380/1023 atomic regions from SNP 113833 to 114433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,881 DEBUG Processing 458/858 atomic regions from SNP 137256 to 137856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,889 DEBUG Processing 449/897 atomic regions from SNP 134600 to 135200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,960 DEBUG Processing 352/1135 atomic regions from SNP 105580 to 106180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,025 DEBUG Processing 428/474 atomic regions from SNP 128225 to 128825 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,099 DEBUG Processing 240/648 atomic regions from SNP 71846 to 72446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,152 DEBUG Processing 381/1023 atomic regions from SNP 114133 to 114733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,182 DEBUG Processing 459/858 atomic regions from SNP 137556 to 138156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,186 DEBUG Processing 450/897 atomic regions from SNP 134900 to 135500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,252 DEBUG Processing 429/474 atomic regions from SNP 128525 to 129125 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,258 DEBUG Processing 353/1135 atomic regions from SNP 105880 to 106480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,449 DEBUG Processing 241/648 atomic regions from SNP 72146 to 72746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,560 DEBUG Processing 382/1023 atomic regions from SNP 114433 to 115033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,575 DEBUG Processing 451/897 atomic regions from SNP 135200 to 135800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,590 DEBUG Processing 460/858 atomic regions from SNP 137856 to 138456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,620 DEBUG Processing 430/474 atomic regions from SNP 128825 to 129425 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,661 DEBUG Processing 354/1135 atomic regions from SNP 106180 to 106780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,761 DEBUG Processing 242/648 atomic regions from SNP 72446 to 73046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,831 DEBUG Processing 452/897 atomic regions from SNP 135500 to 136100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,834 DEBUG Processing 461/858 atomic regions from SNP 138156 to 138756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,841 DEBUG Processing 383/1023 atomic regions from SNP 114733 to 115333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,871 DEBUG Processing 431/474 atomic regions from SNP 129125 to 129725 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,943 DEBUG Processing 355/1135 atomic regions from SNP 106480 to 107080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,993 DEBUG Processing 243/648 atomic regions from SNP 72746 to 73346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,070 DEBUG Processing 462/858 atomic regions from SNP 138456 to 139056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,088 DEBUG Processing 453/897 atomic regions from SNP 135800 to 136400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,107 DEBUG Processing 432/474 atomic regions from SNP 129425 to 130025 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,114 DEBUG Processing 384/1023 atomic regions from SNP 115033 to 115633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,215 DEBUG Processing 356/1135 atomic regions from SNP 106780 to 107380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,224 DEBUG Processing 244/648 atomic regions from SNP 73046 to 73646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,301 DEBUG Processing 463/858 atomic regions from SNP 138756 to 139356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,338 DEBUG Processing 433/474 atomic regions from SNP 129725 to 130325 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,341 DEBUG Processing 454/897 atomic regions from SNP 136100 to 136700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,380 DEBUG Processing 385/1023 atomic regions from SNP 115333 to 115933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,470 DEBUG Processing 245/648 atomic regions from SNP 73346 to 73946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,512 DEBUG Processing 357/1135 atomic regions from SNP 107080 to 107680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,525 DEBUG Processing 464/858 atomic regions from SNP 139056 to 139656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,555 DEBUG Processing 434/474 atomic regions from SNP 130025 to 130625 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,581 DEBUG Processing 455/897 atomic regions from SNP 136400 to 137000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,631 DEBUG Processing 386/1023 atomic regions from SNP 115633 to 116233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,727 DEBUG Processing 246/648 atomic regions from SNP 73646 to 74246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,761 DEBUG Processing 465/858 atomic regions from SNP 139356 to 139956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,782 DEBUG Processing 435/474 atomic regions from SNP 130325 to 130925 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,790 DEBUG Processing 358/1135 atomic regions from SNP 107380 to 107980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,836 DEBUG Processing 456/897 atomic regions from SNP 136700 to 137300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,884 DEBUG Processing 387/1023 atomic regions from SNP 115933 to 116533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,987 DEBUG Processing 247/648 atomic regions from SNP 73946 to 74546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,994 DEBUG Processing 466/858 atomic regions from SNP 139656 to 140256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,007 DEBUG Processing 436/474 atomic regions from SNP 130625 to 131225 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,063 DEBUG Processing 359/1135 atomic regions from SNP 107680 to 108280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,101 DEBUG Processing 457/897 atomic regions from SNP 137000 to 137600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,140 DEBUG Processing 388/1023 atomic regions from SNP 116233 to 116833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,218 DEBUG Processing 248/648 atomic regions from SNP 74246 to 74846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,227 DEBUG Processing 467/858 atomic regions from SNP 139956 to 140556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,242 DEBUG Processing 437/474 atomic regions from SNP 130925 to 131525 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,358 DEBUG Processing 360/1135 atomic regions from SNP 107980 to 108580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,364 DEBUG Processing 458/897 atomic regions from SNP 137300 to 137900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,394 DEBUG Processing 389/1023 atomic regions from SNP 116533 to 117133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,443 DEBUG Processing 249/648 atomic regions from SNP 74546 to 75146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,455 DEBUG Processing 468/858 atomic regions from SNP 140256 to 140856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,462 DEBUG Processing 438/474 atomic regions from SNP 131225 to 131825 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,635 DEBUG Processing 459/897 atomic regions from SNP 137600 to 138200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,645 DEBUG Processing 390/1023 atomic regions from SNP 116833 to 117433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,647 DEBUG Processing 361/1135 atomic regions from SNP 108280 to 108880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,669 DEBUG Processing 250/648 atomic regions from SNP 74846 to 75446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,679 DEBUG Processing 469/858 atomic regions from SNP 140556 to 141156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,682 DEBUG Processing 439/474 atomic regions from SNP 131525 to 132125 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,901 DEBUG Processing 460/897 atomic regions from SNP 137900 to 138500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,910 DEBUG Processing 251/648 atomic regions from SNP 75146 to 75746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,917 DEBUG Processing 440/474 atomic regions from SNP 131825 to 132425 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,918 DEBUG Processing 391/1023 atomic regions from SNP 117133 to 117733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,919 DEBUG Processing 470/858 atomic regions from SNP 140856 to 141456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,940 DEBUG Processing 362/1135 atomic regions from SNP 108580 to 109180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,144 DEBUG Processing 252/648 atomic regions from SNP 75446 to 76046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,145 DEBUG Processing 441/474 atomic regions from SNP 132125 to 132725 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,150 DEBUG Processing 461/897 atomic regions from SNP 138200 to 138800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,152 DEBUG Processing 471/858 atomic regions from SNP 141156 to 141756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,182 DEBUG Processing 392/1023 atomic regions from SNP 117433 to 118033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,227 DEBUG Processing 363/1135 atomic regions from SNP 108880 to 109480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,372 DEBUG Processing 442/474 atomic regions from SNP 132425 to 133025 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,377 DEBUG Processing 253/648 atomic regions from SNP 75746 to 76346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,388 DEBUG Processing 472/858 atomic regions from SNP 141456 to 142056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,397 DEBUG Processing 462/897 atomic regions from SNP 138500 to 139100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,445 DEBUG Processing 393/1023 atomic regions from SNP 117733 to 118333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,512 DEBUG Processing 364/1135 atomic regions from SNP 109180 to 109780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,595 DEBUG Processing 443/474 atomic regions from SNP 132725 to 133325 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,610 DEBUG Processing 254/648 atomic regions from SNP 76046 to 76646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,620 DEBUG Processing 473/858 atomic regions from SNP 141756 to 142356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,638 DEBUG Processing 463/897 atomic regions from SNP 138800 to 139400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,705 DEBUG Processing 394/1023 atomic regions from SNP 118033 to 118633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,772 DEBUG Processing 365/1135 atomic regions from SNP 109480 to 110080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,815 DEBUG Processing 444/474 atomic regions from SNP 133025 to 133625 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,836 DEBUG Processing 255/648 atomic regions from SNP 76346 to 76946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,848 DEBUG Processing 474/858 atomic regions from SNP 142056 to 142656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,878 DEBUG Processing 464/897 atomic regions from SNP 139100 to 139700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,957 DEBUG Processing 395/1023 atomic regions from SNP 118333 to 118933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,034 DEBUG Processing 366/1135 atomic regions from SNP 109780 to 110380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,039 DEBUG Processing 445/474 atomic regions from SNP 133325 to 133925 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,065 DEBUG Processing 256/648 atomic regions from SNP 76646 to 77246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,079 DEBUG Processing 475/858 atomic regions from SNP 142356 to 142956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,121 DEBUG Processing 465/897 atomic regions from SNP 139400 to 140000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,209 DEBUG Processing 396/1023 atomic regions from SNP 118633 to 119233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,261 DEBUG Processing 446/474 atomic regions from SNP 133625 to 134225 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,294 DEBUG Processing 257/648 atomic regions from SNP 76946 to 77546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,296 DEBUG Processing 367/1135 atomic regions from SNP 110080 to 110680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,309 DEBUG Processing 476/858 atomic regions from SNP 142656 to 143256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,379 DEBUG Processing 466/897 atomic regions from SNP 139700 to 140300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,481 DEBUG Processing 447/474 atomic regions from SNP 133925 to 134525 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,482 DEBUG Processing 397/1023 atomic regions from SNP 118933 to 119533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,522 DEBUG Processing 258/648 atomic regions from SNP 77246 to 77846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,539 DEBUG Processing 477/858 atomic regions from SNP 142956 to 143556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,561 DEBUG Processing 368/1135 atomic regions from SNP 110380 to 110980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,650 DEBUG Processing 467/897 atomic regions from SNP 140000 to 140600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,697 DEBUG Processing 448/474 atomic regions from SNP 134225 to 134825 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,749 DEBUG Processing 259/648 atomic regions from SNP 77546 to 78146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,752 DEBUG Processing 398/1023 atomic regions from SNP 119233 to 119833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,767 DEBUG Processing 478/858 atomic regions from SNP 143256 to 143856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,823 DEBUG Processing 369/1135 atomic regions from SNP 110680 to 111280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,914 DEBUG Processing 449/474 atomic regions from SNP 134525 to 135125 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,920 DEBUG Processing 468/897 atomic regions from SNP 140300 to 140900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,972 DEBUG Processing 260/648 atomic regions from SNP 77846 to 78446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,993 DEBUG Processing 479/858 atomic regions from SNP 143556 to 144156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,008 DEBUG Processing 399/1023 atomic regions from SNP 119533 to 120133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,081 DEBUG Processing 370/1135 atomic regions from SNP 110980 to 111580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,134 DEBUG Processing 450/474 atomic regions from SNP 134825 to 135425 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,196 DEBUG Processing 469/897 atomic regions from SNP 140600 to 141200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,199 DEBUG Processing 261/648 atomic regions from SNP 78146 to 78746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,218 DEBUG Processing 480/858 atomic regions from SNP 143856 to 144456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,263 DEBUG Processing 400/1023 atomic regions from SNP 119833 to 120433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,340 DEBUG Processing 371/1135 atomic regions from SNP 111280 to 111880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,354 DEBUG Processing 451/474 atomic regions from SNP 135125 to 135725 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,424 DEBUG Processing 262/648 atomic regions from SNP 78446 to 79046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,445 DEBUG Processing 481/858 atomic regions from SNP 144156 to 144756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,467 DEBUG Processing 470/897 atomic regions from SNP 140900 to 141500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,514 DEBUG Processing 401/1023 atomic regions from SNP 120133 to 120733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,573 DEBUG Processing 452/474 atomic regions from SNP 135425 to 136025 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,598 DEBUG Processing 372/1135 atomic regions from SNP 111580 to 112180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,653 DEBUG Processing 263/648 atomic regions from SNP 78746 to 79346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,671 DEBUG Processing 482/858 atomic regions from SNP 144456 to 145056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,717 DEBUG Processing 471/897 atomic regions from SNP 141200 to 141800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,766 DEBUG Processing 402/1023 atomic regions from SNP 120433 to 121033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,792 DEBUG Processing 453/474 atomic regions from SNP 135725 to 136325 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,879 DEBUG Processing 264/648 atomic regions from SNP 79046 to 79646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,886 DEBUG Processing 373/1135 atomic regions from SNP 111880 to 112480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,897 DEBUG Processing 483/858 atomic regions from SNP 144756 to 145356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,987 DEBUG Processing 472/897 atomic regions from SNP 141500 to 142100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,013 DEBUG Processing 454/474 atomic regions from SNP 136025 to 136625 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,027 DEBUG Processing 403/1023 atomic regions from SNP 120733 to 121333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,105 DEBUG Processing 265/648 atomic regions from SNP 79346 to 79946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,123 DEBUG Processing 484/858 atomic regions from SNP 145056 to 145656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,158 DEBUG Processing 374/1135 atomic regions from SNP 112180 to 112780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,236 DEBUG Processing 455/474 atomic regions from SNP 136325 to 136925 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,250 DEBUG Processing 473/897 atomic regions from SNP 141800 to 142400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,299 DEBUG Processing 404/1023 atomic regions from SNP 121033 to 121633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,334 DEBUG Processing 266/648 atomic regions from SNP 79646 to 80246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,350 DEBUG Processing 485/858 atomic regions from SNP 145356 to 145956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,416 DEBUG Processing 375/1135 atomic regions from SNP 112480 to 113080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,456 DEBUG Processing 456/474 atomic regions from SNP 136625 to 137225 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,530 DEBUG Processing 474/897 atomic regions from SNP 142100 to 142700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,565 DEBUG Processing 267/648 atomic regions from SNP 79946 to 80546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,572 DEBUG Processing 405/1023 atomic regions from SNP 121333 to 121933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,580 DEBUG Processing 486/858 atomic regions from SNP 145656 to 146256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,672 DEBUG Processing 457/474 atomic regions from SNP 136925 to 137525 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,674 DEBUG Processing 376/1135 atomic regions from SNP 112780 to 113380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,781 DEBUG Processing 475/897 atomic regions from SNP 142400 to 143000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,795 DEBUG Processing 268/648 atomic regions from SNP 80246 to 80846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,812 DEBUG Processing 487/858 atomic regions from SNP 145956 to 146556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,833 DEBUG Processing 406/1023 atomic regions from SNP 121633 to 122233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,893 DEBUG Processing 458/474 atomic regions from SNP 137225 to 137825 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,935 DEBUG Processing 377/1135 atomic regions from SNP 113080 to 113680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,021 DEBUG Processing 269/648 atomic regions from SNP 80546 to 81146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,026 DEBUG Processing 476/897 atomic regions from SNP 142700 to 143300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,052 DEBUG Processing 488/858 atomic regions from SNP 146256 to 146856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,119 DEBUG Processing 407/1023 atomic regions from SNP 121933 to 122533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,121 DEBUG Processing 459/474 atomic regions from SNP 137525 to 138125 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,193 DEBUG Processing 378/1135 atomic regions from SNP 113380 to 113980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,244 DEBUG Processing 270/648 atomic regions from SNP 80846 to 81446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,271 DEBUG Processing 477/897 atomic regions from SNP 143000 to 143600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,278 DEBUG Processing 489/858 atomic regions from SNP 146556 to 147156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,349 DEBUG Processing 460/474 atomic regions from SNP 137825 to 138425 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,398 DEBUG Processing 408/1023 atomic regions from SNP 122233 to 122833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,457 DEBUG Processing 379/1135 atomic regions from SNP 113680 to 114280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,474 DEBUG Processing 271/648 atomic regions from SNP 81146 to 81746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,508 DEBUG Processing 490/858 atomic regions from SNP 146856 to 147456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,526 DEBUG Processing 478/897 atomic regions from SNP 143300 to 143900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,576 DEBUG Processing 461/474 atomic regions from SNP 138125 to 138725 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,661 DEBUG Processing 409/1023 atomic regions from SNP 122533 to 123133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,712 DEBUG Processing 272/648 atomic regions from SNP 81446 to 82046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,731 DEBUG Processing 380/1135 atomic regions from SNP 113980 to 114580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,750 DEBUG Processing 491/858 atomic regions from SNP 147156 to 147756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,796 DEBUG Processing 479/897 atomic regions from SNP 143600 to 144200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,806 DEBUG Processing 462/474 atomic regions from SNP 138425 to 139025 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,923 DEBUG Processing 410/1023 atomic regions from SNP 122833 to 123433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,948 DEBUG Processing 273/648 atomic regions from SNP 81746 to 82346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,003 DEBUG Processing 492/858 atomic regions from SNP 147456 to 148056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,007 DEBUG Processing 381/1135 atomic regions from SNP 114280 to 114880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,056 DEBUG Processing 463/474 atomic regions from SNP 138725 to 139325 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,100 DEBUG Processing 480/897 atomic regions from SNP 143900 to 144500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,180 DEBUG Processing 274/648 atomic regions from SNP 82046 to 82646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,181 DEBUG Processing 411/1023 atomic regions from SNP 123133 to 123733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,272 DEBUG Processing 493/858 atomic regions from SNP 147756 to 148356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,309 DEBUG Processing 382/1135 atomic regions from SNP 114580 to 115180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,347 DEBUG Processing 464/474 atomic regions from SNP 139025 to 139625 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,419 DEBUG Processing 481/897 atomic regions from SNP 144200 to 144800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,446 DEBUG Processing 275/648 atomic regions from SNP 82346 to 82946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,475 DEBUG Processing 412/1023 atomic regions from SNP 123433 to 124033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,542 DEBUG Processing 494/858 atomic regions from SNP 148056 to 148656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,608 DEBUG Processing 383/1135 atomic regions from SNP 114880 to 115480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,625 DEBUG Processing 465/474 atomic regions from SNP 139325 to 139925 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,734 DEBUG Processing 276/648 atomic regions from SNP 82646 to 83246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,755 DEBUG Processing 482/897 atomic regions from SNP 144500 to 145100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,786 DEBUG Processing 413/1023 atomic regions from SNP 123733 to 124333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,800 DEBUG Processing 495/858 atomic regions from SNP 148356 to 148956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,899 DEBUG Processing 466/474 atomic regions from SNP 139625 to 140225 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,914 DEBUG Processing 384/1135 atomic regions from SNP 115180 to 115780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,978 DEBUG Processing 277/648 atomic regions from SNP 82946 to 83546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,034 DEBUG Processing 496/858 atomic regions from SNP 148656 to 149256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,048 DEBUG Processing 414/1023 atomic regions from SNP 124033 to 124633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,060 DEBUG Processing 483/897 atomic regions from SNP 144800 to 145400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,122 DEBUG Processing 467/474 atomic regions from SNP 139925 to 140525 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,177 DEBUG Processing 385/1135 atomic regions from SNP 115480 to 116080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,211 DEBUG Processing 278/648 atomic regions from SNP 83246 to 83846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,264 DEBUG Processing 497/858 atomic regions from SNP 148956 to 149556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,309 DEBUG Processing 415/1023 atomic regions from SNP 124333 to 124933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,347 DEBUG Processing 484/897 atomic regions from SNP 145100 to 145700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,352 DEBUG Processing 468/474 atomic regions from SNP 140225 to 140825 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,447 DEBUG Processing 386/1135 atomic regions from SNP 115780 to 116380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,448 DEBUG Processing 279/648 atomic regions from SNP 83546 to 84146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,492 DEBUG Processing 498/858 atomic regions from SNP 149256 to 149856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,564 DEBUG Processing 416/1023 atomic regions from SNP 124633 to 125233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,581 DEBUG Processing 469/474 atomic regions from SNP 140525 to 141125 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,621 DEBUG Processing 485/897 atomic regions from SNP 145400 to 146000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,674 DEBUG Processing 280/648 atomic regions from SNP 83846 to 84446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,710 DEBUG Processing 387/1135 atomic regions from SNP 116080 to 116680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,718 DEBUG Processing 499/858 atomic regions from SNP 149556 to 150156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,800 DEBUG Processing 470/474 atomic regions from SNP 140825 to 141425 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,840 DEBUG Processing 417/1023 atomic regions from SNP 124933 to 125533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,895 DEBUG Processing 486/897 atomic regions from SNP 145700 to 146300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,909 DEBUG Processing 281/648 atomic regions from SNP 84146 to 84746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,956 DEBUG Processing 500/858 atomic regions from SNP 149856 to 150456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,985 DEBUG Processing 388/1135 atomic regions from SNP 116380 to 116980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,050 DEBUG Processing 471/474 atomic regions from SNP 141125 to 141725 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,124 DEBUG Processing 418/1023 atomic regions from SNP 125233 to 125833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,184 DEBUG Processing 282/648 atomic regions from SNP 84446 to 85046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,204 DEBUG Processing 487/897 atomic regions from SNP 146000 to 146600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,220 DEBUG Processing 501/858 atomic regions from SNP 150156 to 150756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,272 DEBUG Processing 389/1135 atomic regions from SNP 116680 to 117280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,275 DEBUG Processing 472/474 atomic regions from SNP 141425 to 142025 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,382 DEBUG Processing 419/1023 atomic regions from SNP 125533 to 126133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,412 DEBUG Processing 283/648 atomic regions from SNP 84746 to 85346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,455 DEBUG Processing 502/858 atomic regions from SNP 150456 to 151056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,484 DEBUG Processing 488/897 atomic regions from SNP 146300 to 146900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,505 DEBUG Processing 473/474 atomic regions from SNP 141725 to 142325 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,549 DEBUG Processing 390/1135 atomic regions from SNP 116980 to 117580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,633 DEBUG Processing 284/648 atomic regions from SNP 85046 to 85646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,649 DEBUG Processing 420/1023 atomic regions from SNP 125833 to 126433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,681 DEBUG Processing 503/858 atomic regions from SNP 150756 to 151356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,727 DEBUG Processing 474/474 atomic regions from SNP 142025 to 142625 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,763 DEBUG Processing 489/897 atomic regions from SNP 146600 to 147200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,810 DEBUG Processing 391/1135 atomic regions from SNP 117280 to 117880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,844 DEBUG Unique SNPs positions in subchromosome 4: 142626 2025-01-31 09:45:26,854 DEBUG Processing 285/648 atomic regions from SNP 85346 to 85946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,907 DEBUG Processing 504/858 atomic regions from SNP 151056 to 151656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,919 DEBUG Processing 421/1023 atomic regions from SNP 126133 to 126733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,036 DEBUG Processing 490/897 atomic regions from SNP 146900 to 147500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,072 DEBUG Processing 392/1135 atomic regions from SNP 117580 to 118180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,081 DEBUG Processing 286/648 atomic regions from SNP 85646 to 86246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,136 DEBUG Processing 505/858 atomic regions from SNP 151356 to 151956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,175 DEBUG Processing 422/1023 atomic regions from SNP 126433 to 127033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,261 DEBUG Subchromosome time: 130.9246770029422, subchromosome SNPs: 142626 2025-01-31 09:45:27,279 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:27,304 DEBUG Processing 491/897 atomic regions from SNP 147200 to 147800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,308 DEBUG Processing 287/648 atomic regions from SNP 85946 to 86546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,333 DEBUG Processing 393/1135 atomic regions from SNP 117880 to 118480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,363 DEBUG Processing 506/858 atomic regions from SNP 151656 to 152256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,429 DEBUG Processing 423/1023 atomic regions from SNP 126733 to 127333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,533 DEBUG Processing 288/648 atomic regions from SNP 86246 to 86846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,575 DEBUG Processing 492/897 atomic regions from SNP 147500 to 148100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,595 DEBUG Processing 507/858 atomic regions from SNP 151956 to 152556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,596 DEBUG Processing 394/1135 atomic regions from SNP 118180 to 118780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,679 DEBUG Processing 424/1023 atomic regions from SNP 127033 to 127633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,752 DEBUG Processing 289/648 atomic regions from SNP 86546 to 87146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,833 DEBUG Processing 508/858 atomic regions from SNP 152256 to 152856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,843 DEBUG Processing 493/897 atomic regions from SNP 147800 to 148400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,864 DEBUG Processing 395/1135 atomic regions from SNP 118480 to 119080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,928 DEBUG Processing 425/1023 atomic regions from SNP 127333 to 127933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,968 DEBUG Processing 290/648 atomic regions from SNP 86846 to 87446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,084 DEBUG Processing 509/858 atomic regions from SNP 152556 to 153156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,118 DEBUG Processing 494/897 atomic regions from SNP 148100 to 148700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,128 DEBUG Processing 396/1135 atomic regions from SNP 118780 to 119380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,182 DEBUG Processing 426/1023 atomic regions from SNP 127633 to 128233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,188 DEBUG Processing 291/648 atomic regions from SNP 87146 to 87746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,312 DEBUG Processing 510/858 atomic regions from SNP 152856 to 153456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,389 DEBUG Processing 397/1135 atomic regions from SNP 119080 to 119680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,393 DEBUG Processing 495/897 atomic regions from SNP 148400 to 149000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,414 DEBUG Processing 292/648 atomic regions from SNP 87446 to 88046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,438 DEBUG Processing 427/1023 atomic regions from SNP 127933 to 128533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,535 DEBUG Processing 511/858 atomic regions from SNP 153156 to 153756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,641 DEBUG Processing 293/648 atomic regions from SNP 87746 to 88346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,649 DEBUG Processing 398/1135 atomic regions from SNP 119380 to 119980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,679 DEBUG Processing 496/897 atomic regions from SNP 148700 to 149300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,692 DEBUG Processing 428/1023 atomic regions from SNP 128233 to 128833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,754 DEBUG Processing 512/858 atomic regions from SNP 153456 to 154056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,871 DEBUG Processing 294/648 atomic regions from SNP 88046 to 88646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,917 DEBUG Processing 399/1135 atomic regions from SNP 119680 to 120280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,955 DEBUG Processing 497/897 atomic regions from SNP 149000 to 149600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,959 DEBUG Processing 429/1023 atomic regions from SNP 128533 to 129133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,987 DEBUG Processing 513/858 atomic regions from SNP 153756 to 154356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,103 DEBUG Processing 295/648 atomic regions from SNP 88346 to 88946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,176 DEBUG Processing 400/1135 atomic regions from SNP 119980 to 120580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,203 DEBUG Processing 498/897 atomic regions from SNP 149300 to 149900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,210 DEBUG Processing 514/858 atomic regions from SNP 154056 to 154656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,211 DEBUG Processing 430/1023 atomic regions from SNP 128833 to 129433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,327 DEBUG Processing 296/648 atomic regions from SNP 88646 to 89246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,437 DEBUG Processing 515/858 atomic regions from SNP 154356 to 154956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,441 DEBUG Processing 401/1135 atomic regions from SNP 120280 to 120880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,448 DEBUG Processing 499/897 atomic regions from SNP 149600 to 150200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,466 DEBUG Processing 431/1023 atomic regions from SNP 129133 to 129733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,548 DEBUG Processing 297/648 atomic regions from SNP 88946 to 89546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,661 DEBUG Processing 516/858 atomic regions from SNP 154656 to 155256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,688 DEBUG Processing 500/897 atomic regions from SNP 149900 to 150500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,699 DEBUG Processing 402/1135 atomic regions from SNP 120580 to 121180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,715 DEBUG Processing 432/1023 atomic regions from SNP 129433 to 130033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,768 DEBUG Processing 298/648 atomic regions from SNP 89246 to 89846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,887 DEBUG Processing 517/858 atomic regions from SNP 154956 to 155556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,927 DEBUG Processing 501/897 atomic regions from SNP 150200 to 150800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,961 DEBUG Processing 403/1135 atomic regions from SNP 120880 to 121480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,969 DEBUG Processing 433/1023 atomic regions from SNP 129733 to 130333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,989 DEBUG Processing 299/648 atomic regions from SNP 89546 to 90146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,112 DEBUG Processing 518/858 atomic regions from SNP 155256 to 155856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,169 DEBUG Processing 502/897 atomic regions from SNP 150500 to 151100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,212 DEBUG Processing 300/648 atomic regions from SNP 89846 to 90446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,223 DEBUG Processing 404/1135 atomic regions from SNP 121180 to 121780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,247 DEBUG Processing 434/1023 atomic regions from SNP 130033 to 130633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,334 DEBUG Processing 519/858 atomic regions from SNP 155556 to 156156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,412 DEBUG Processing 503/897 atomic regions from SNP 150800 to 151400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,438 DEBUG Processing 301/648 atomic regions from SNP 90146 to 90746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,507 DEBUG Processing 405/1135 atomic regions from SNP 121480 to 122080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,512 DEBUG Processing 435/1023 atomic regions from SNP 130333 to 130933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,553 DEBUG Processing 520/858 atomic regions from SNP 155856 to 156456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,656 DEBUG Processing 504/897 atomic regions from SNP 151100 to 151700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,660 DEBUG Processing 302/648 atomic regions from SNP 90446 to 91046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,761 DEBUG Processing 436/1023 atomic regions from SNP 130633 to 131233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,773 DEBUG Processing 521/858 atomic regions from SNP 156156 to 156756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,793 DEBUG Processing 406/1135 atomic regions from SNP 121780 to 122380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,882 DEBUG Processing 303/648 atomic regions from SNP 90746 to 91346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,902 DEBUG Processing 505/897 atomic regions from SNP 151400 to 152000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,996 DEBUG Processing 522/858 atomic regions from SNP 156456 to 157056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,013 DEBUG Processing 437/1023 atomic regions from SNP 130933 to 131533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,061 DEBUG Processing 407/1135 atomic regions from SNP 122080 to 122680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,102 DEBUG Processing 304/648 atomic regions from SNP 91046 to 91646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,142 DEBUG Processing 506/897 atomic regions from SNP 151700 to 152300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,223 DEBUG Processing 523/858 atomic regions from SNP 156756 to 157356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,266 DEBUG Processing 438/1023 atomic regions from SNP 131233 to 131833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,323 DEBUG Processing 305/648 atomic regions from SNP 91346 to 91946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,326 DEBUG Processing 408/1135 atomic regions from SNP 122380 to 122980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,376 DEBUG Processing 507/897 atomic regions from SNP 152000 to 152600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,460 DEBUG Processing 524/858 atomic regions from SNP 157056 to 157656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,521 DEBUG Processing 439/1023 atomic regions from SNP 131533 to 132133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,547 DEBUG Processing 306/648 atomic regions from SNP 91646 to 92246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,592 DEBUG Processing 409/1135 atomic regions from SNP 122680 to 123280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,611 DEBUG Processing 508/897 atomic regions from SNP 152300 to 152900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,699 DEBUG Processing 525/858 atomic regions from SNP 157356 to 157956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,770 DEBUG Processing 307/648 atomic regions from SNP 91946 to 92546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,804 DEBUG Processing 440/1023 atomic regions from SNP 131833 to 132433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,848 DEBUG Processing 509/897 atomic regions from SNP 152600 to 153200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,850 DEBUG Processing 410/1135 atomic regions from SNP 122980 to 123580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,919 DEBUG Processing 526/858 atomic regions from SNP 157656 to 158256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,992 DEBUG Processing 308/648 atomic regions from SNP 92246 to 92846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,065 DEBUG Processing 441/1023 atomic regions from SNP 132133 to 132733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,096 DEBUG Processing 510/897 atomic regions from SNP 152900 to 153500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,114 DEBUG Processing 411/1135 atomic regions from SNP 123280 to 123880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,146 DEBUG Processing 527/858 atomic regions from SNP 157956 to 158556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,223 DEBUG Processing 309/648 atomic regions from SNP 92546 to 93146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,318 DEBUG Processing 442/1023 atomic regions from SNP 132433 to 133033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,338 DEBUG Processing 511/897 atomic regions from SNP 153200 to 153800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,369 DEBUG Processing 528/858 atomic regions from SNP 158256 to 158856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,373 DEBUG Processing 412/1135 atomic regions from SNP 123580 to 124180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,443 DEBUG Processing 310/648 atomic regions from SNP 92846 to 93446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,571 DEBUG Processing 443/1023 atomic regions from SNP 132733 to 133333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,576 DEBUG Processing 512/897 atomic regions from SNP 153500 to 154100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,592 DEBUG Processing 529/858 atomic regions from SNP 158556 to 159156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,633 DEBUG Processing 413/1135 atomic regions from SNP 123880 to 124480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,664 DEBUG Processing 311/648 atomic regions from SNP 93146 to 93746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,813 DEBUG Processing 513/897 atomic regions from SNP 153800 to 154400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,816 DEBUG Processing 530/858 atomic regions from SNP 158856 to 159456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,823 DEBUG Processing 444/1023 atomic regions from SNP 133033 to 133633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,886 DEBUG Processing 312/648 atomic regions from SNP 93446 to 94046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,891 DEBUG Processing 414/1135 atomic regions from SNP 124180 to 124780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,038 DEBUG Processing 531/858 atomic regions from SNP 159156 to 159756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,046 DEBUG Processing 514/897 atomic regions from SNP 154100 to 154700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,081 DEBUG Processing 445/1023 atomic regions from SNP 133333 to 133933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,110 DEBUG Processing 313/648 atomic regions from SNP 93746 to 94346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,148 DEBUG Processing 415/1135 atomic regions from SNP 124480 to 125080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,262 DEBUG Processing 532/858 atomic regions from SNP 159456 to 160056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,280 DEBUG Processing 515/897 atomic regions from SNP 154400 to 155000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,337 DEBUG Processing 314/648 atomic regions from SNP 94046 to 94646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,351 DEBUG Processing 446/1023 atomic regions from SNP 133633 to 134233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,408 DEBUG Processing 416/1135 atomic regions from SNP 124780 to 125380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,482 DEBUG Processing 533/858 atomic regions from SNP 159756 to 160356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,538 DEBUG Processing 516/897 atomic regions from SNP 154700 to 155300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,567 DEBUG Processing 315/648 atomic regions from SNP 94346 to 94946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,606 DEBUG Processing 447/1023 atomic regions from SNP 133933 to 134533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,677 DEBUG Processing 417/1135 atomic regions from SNP 125080 to 125680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,700 DEBUG Processing 534/858 atomic regions from SNP 160056 to 160656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,794 DEBUG Processing 316/648 atomic regions from SNP 94646 to 95246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,802 DEBUG Processing 517/897 atomic regions from SNP 155000 to 155600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,863 DEBUG Processing 448/1023 atomic regions from SNP 134233 to 134833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,918 DEBUG Processing 535/858 atomic regions from SNP 160356 to 160956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,962 DEBUG Processing 418/1135 atomic regions from SNP 125380 to 125980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,014 DEBUG Processing 317/648 atomic regions from SNP 94946 to 95546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,072 DEBUG Processing 518/897 atomic regions from SNP 155300 to 155900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,118 DEBUG Processing 449/1023 atomic regions from SNP 134533 to 135133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,139 DEBUG Processing 536/858 atomic regions from SNP 160656 to 161256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,234 DEBUG Processing 318/648 atomic regions from SNP 95246 to 95846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,250 DEBUG Processing 419/1135 atomic regions from SNP 125680 to 126280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,339 DEBUG Processing 519/897 atomic regions from SNP 155600 to 156200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,362 DEBUG Processing 537/858 atomic regions from SNP 160956 to 161556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,368 DEBUG Processing 450/1023 atomic regions from SNP 134833 to 135433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,456 DEBUG Processing 319/648 atomic regions from SNP 95546 to 96146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,540 DEBUG Processing 420/1135 atomic regions from SNP 125980 to 126580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,583 DEBUG Processing 538/858 atomic regions from SNP 161256 to 161856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,611 DEBUG Processing 520/897 atomic regions from SNP 155900 to 156500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,618 DEBUG Processing 451/1023 atomic regions from SNP 135133 to 135733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,677 DEBUG Processing 320/648 atomic regions from SNP 95846 to 96446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,804 DEBUG Processing 539/858 atomic regions from SNP 161556 to 162156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,835 DEBUG Processing 421/1135 atomic regions from SNP 126280 to 126880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,867 DEBUG Processing 452/1023 atomic regions from SNP 135433 to 136033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,881 DEBUG Processing 521/897 atomic regions from SNP 156200 to 156800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,905 DEBUG Processing 321/648 atomic regions from SNP 96146 to 96746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,021 DEBUG Processing 540/858 atomic regions from SNP 161856 to 162456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,113 DEBUG Processing 453/1023 atomic regions from SNP 135733 to 136333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,115 DEBUG Processing 422/1135 atomic regions from SNP 126580 to 127180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,130 DEBUG Processing 322/648 atomic regions from SNP 96446 to 97046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,152 DEBUG Processing 522/897 atomic regions from SNP 156500 to 157100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,238 DEBUG Processing 541/858 atomic regions from SNP 162156 to 162756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,351 DEBUG Processing 323/648 atomic regions from SNP 96746 to 97346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,360 DEBUG Processing 454/1023 atomic regions from SNP 136033 to 136633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,398 DEBUG Processing 423/1135 atomic regions from SNP 126880 to 127480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,422 DEBUG Processing 523/897 atomic regions from SNP 156800 to 157400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,460 DEBUG Processing 542/858 atomic regions from SNP 162456 to 163056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,571 DEBUG Processing 324/648 atomic regions from SNP 97046 to 97646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,610 DEBUG Processing 455/1023 atomic regions from SNP 136333 to 136933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,690 DEBUG Segmenting atomic regions: 2025-01-31 09:45:35,694 DEBUG Processing 424/1135 atomic regions from SNP 127180 to 127780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,695 DEBUG Processing 543/858 atomic regions from SNP 162756 to 163356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,701 DEBUG Processing 524/897 atomic regions from SNP 157100 to 157700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,788 DEBUG Processing 325/648 atomic regions from SNP 97346 to 97946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,797 DEBUG Processing 1/235 atomic regions from SNP 0 to 602 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:35,856 DEBUG Processing 456/1023 atomic regions from SNP 136633 to 137233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,921 DEBUG Processing 544/858 atomic regions from SNP 163056 to 163656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,972 DEBUG Processing 525/897 atomic regions from SNP 157400 to 158000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,985 DEBUG Processing 425/1135 atomic regions from SNP 127480 to 128080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,014 DEBUG Processing 326/648 atomic regions from SNP 97646 to 98246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,017 DEBUG Processing 2/235 atomic regions from SNP 302 to 904 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,104 DEBUG Processing 457/1023 atomic regions from SNP 136933 to 137533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,162 DEBUG Processing 545/858 atomic regions from SNP 163356 to 163956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,247 DEBUG Processing 3/235 atomic regions from SNP 604 to 1206 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,249 DEBUG Processing 327/648 atomic regions from SNP 97946 to 98546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,256 DEBUG Processing 526/897 atomic regions from SNP 157700 to 158300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,280 DEBUG Processing 426/1135 atomic regions from SNP 127780 to 128380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,353 DEBUG Processing 458/1023 atomic regions from SNP 137233 to 137833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,405 DEBUG Processing 546/858 atomic regions from SNP 163656 to 164256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,468 DEBUG Processing 4/235 atomic regions from SNP 906 to 1508 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,479 DEBUG Processing 328/648 atomic regions from SNP 98246 to 98846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,532 DEBUG Processing 527/897 atomic regions from SNP 158000 to 158600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,548 DEBUG Processing 427/1135 atomic regions from SNP 128080 to 128680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,606 DEBUG Processing 459/1023 atomic regions from SNP 137533 to 138133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,638 DEBUG Processing 547/858 atomic regions from SNP 163956 to 164556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,688 DEBUG Processing 5/235 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,714 DEBUG Processing 329/648 atomic regions from SNP 98546 to 99146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,817 DEBUG Processing 428/1135 atomic regions from SNP 128380 to 128980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,822 DEBUG Processing 528/897 atomic regions from SNP 158300 to 158900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,864 DEBUG Processing 460/1023 atomic regions from SNP 137833 to 138433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,874 DEBUG Processing 548/858 atomic regions from SNP 164256 to 164856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,907 DEBUG Processing 6/235 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,960 DEBUG Processing 330/648 atomic regions from SNP 98846 to 99446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,080 DEBUG Processing 429/1135 atomic regions from SNP 128680 to 129280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,106 DEBUG Processing 549/858 atomic regions from SNP 164556 to 165156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,107 DEBUG Processing 529/897 atomic regions from SNP 158600 to 159200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,122 DEBUG Processing 461/1023 atomic regions from SNP 138133 to 138733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,128 DEBUG Processing 7/235 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,194 DEBUG Processing 331/648 atomic regions from SNP 99146 to 99746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,340 DEBUG Processing 550/858 atomic regions from SNP 164856 to 165456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,346 DEBUG Processing 430/1135 atomic regions from SNP 128980 to 129580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,355 DEBUG Processing 8/235 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,384 DEBUG Processing 530/897 atomic regions from SNP 158900 to 159500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,386 DEBUG Processing 462/1023 atomic regions from SNP 138433 to 139033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,436 DEBUG Processing 332/648 atomic regions from SNP 99446 to 100046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,572 DEBUG Processing 551/858 atomic regions from SNP 165156 to 165756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,584 DEBUG Processing 9/235 atomic regions from SNP 2416 to 3018 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,614 DEBUG Processing 431/1135 atomic regions from SNP 129280 to 129880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,647 DEBUG Processing 531/897 atomic regions from SNP 159200 to 159800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,650 DEBUG Processing 463/1023 atomic regions from SNP 138733 to 139333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,662 DEBUG Processing 333/648 atomic regions from SNP 99746 to 100346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,798 DEBUG Processing 552/858 atomic regions from SNP 165456 to 166056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,803 DEBUG Processing 10/235 atomic regions from SNP 2718 to 3320 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,876 DEBUG Processing 432/1135 atomic regions from SNP 129580 to 130180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,891 DEBUG Processing 334/648 atomic regions from SNP 100046 to 100646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,909 DEBUG Processing 464/1023 atomic regions from SNP 139033 to 139633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,912 DEBUG Processing 532/897 atomic regions from SNP 159500 to 160100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,018 DEBUG Processing 553/858 atomic regions from SNP 165756 to 166356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,019 DEBUG Processing 11/235 atomic regions from SNP 3020 to 3622 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,117 DEBUG Processing 335/648 atomic regions from SNP 100346 to 100946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,134 DEBUG Processing 433/1135 atomic regions from SNP 129880 to 130480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,162 DEBUG Processing 465/1023 atomic regions from SNP 139333 to 139933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,184 DEBUG Processing 533/897 atomic regions from SNP 159800 to 160400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,236 DEBUG Processing 12/235 atomic regions from SNP 3322 to 3924 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,241 DEBUG Processing 554/858 atomic regions from SNP 166056 to 166656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,339 DEBUG Processing 336/648 atomic regions from SNP 100646 to 101246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,391 DEBUG Processing 434/1135 atomic regions from SNP 130180 to 130780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,415 DEBUG Processing 466/1023 atomic regions from SNP 139633 to 140233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,429 DEBUG Processing 534/897 atomic regions from SNP 160100 to 160700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,456 DEBUG Processing 13/235 atomic regions from SNP 3624 to 4226 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,469 DEBUG Processing 555/858 atomic regions from SNP 166356 to 166956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,561 DEBUG Processing 337/648 atomic regions from SNP 100946 to 101546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,651 DEBUG Processing 435/1135 atomic regions from SNP 130480 to 131080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,670 DEBUG Processing 467/1023 atomic regions from SNP 139933 to 140533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,677 DEBUG Processing 14/235 atomic regions from SNP 3926 to 4528 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,691 DEBUG Processing 535/897 atomic regions from SNP 160400 to 161000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,695 DEBUG Processing 556/858 atomic regions from SNP 166656 to 167256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,781 DEBUG Processing 338/648 atomic regions from SNP 101246 to 101846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,899 DEBUG Processing 15/235 atomic regions from SNP 4228 to 4830 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,910 DEBUG Processing 436/1135 atomic regions from SNP 130780 to 131380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,921 DEBUG Processing 557/858 atomic regions from SNP 166956 to 167556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,927 DEBUG Processing 468/1023 atomic regions from SNP 140233 to 140833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,956 DEBUG Processing 536/897 atomic regions from SNP 160700 to 161300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,011 DEBUG Processing 339/648 atomic regions from SNP 101546 to 102146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,127 DEBUG Processing 16/235 atomic regions from SNP 4530 to 5132 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,153 DEBUG Processing 558/858 atomic regions from SNP 167256 to 167856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,177 DEBUG Processing 437/1135 atomic regions from SNP 131080 to 131680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,179 DEBUG Processing 469/1023 atomic regions from SNP 140533 to 141133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,209 DEBUG Processing 537/897 atomic regions from SNP 161000 to 161600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,233 DEBUG Processing 340/648 atomic regions from SNP 101846 to 102446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,349 DEBUG Processing 17/235 atomic regions from SNP 4832 to 5434 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,379 DEBUG Processing 559/858 atomic regions from SNP 167556 to 168156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,433 DEBUG Processing 470/1023 atomic regions from SNP 140833 to 141433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,439 DEBUG Processing 438/1135 atomic regions from SNP 131380 to 131980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,466 DEBUG Processing 538/897 atomic regions from SNP 161300 to 161900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,481 DEBUG Processing 341/648 atomic regions from SNP 102146 to 102746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,572 DEBUG Processing 18/235 atomic regions from SNP 5134 to 5736 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,607 DEBUG Processing 560/858 atomic regions from SNP 167856 to 168456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,686 DEBUG Processing 471/1023 atomic regions from SNP 141133 to 141733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,701 DEBUG Processing 439/1135 atomic regions from SNP 131680 to 132280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,708 DEBUG Processing 342/648 atomic regions from SNP 102446 to 103046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,712 DEBUG Processing 539/897 atomic regions from SNP 161600 to 162200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,796 DEBUG Processing 19/235 atomic regions from SNP 5436 to 6038 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,834 DEBUG Processing 561/858 atomic regions from SNP 168156 to 168756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,930 DEBUG Processing 343/648 atomic regions from SNP 102746 to 103346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,935 DEBUG Processing 472/1023 atomic regions from SNP 141433 to 142033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,944 DEBUG Processing 540/897 atomic regions from SNP 161900 to 162500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,960 DEBUG Processing 440/1135 atomic regions from SNP 131980 to 132580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,016 DEBUG Processing 20/235 atomic regions from SNP 5738 to 6340 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,060 DEBUG Processing 562/858 atomic regions from SNP 168456 to 169056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,156 DEBUG Processing 344/648 atomic regions from SNP 103046 to 103646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,181 DEBUG Processing 541/897 atomic regions from SNP 162200 to 162800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,189 DEBUG Processing 473/1023 atomic regions from SNP 141733 to 142333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,219 DEBUG Processing 441/1135 atomic regions from SNP 132280 to 132880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,233 DEBUG Processing 21/235 atomic regions from SNP 6040 to 6642 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,286 DEBUG Processing 563/858 atomic regions from SNP 168756 to 169356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,380 DEBUG Processing 345/648 atomic regions from SNP 103346 to 103946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,412 DEBUG Processing 542/897 atomic regions from SNP 162500 to 163100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,440 DEBUG Processing 474/1023 atomic regions from SNP 142033 to 142633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,451 DEBUG Processing 22/235 atomic regions from SNP 6342 to 6944 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,478 DEBUG Processing 442/1135 atomic regions from SNP 132580 to 133180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,511 DEBUG Processing 564/858 atomic regions from SNP 169056 to 169656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,601 DEBUG Processing 346/648 atomic regions from SNP 103646 to 104246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,651 DEBUG Processing 543/897 atomic regions from SNP 162800 to 163400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,669 DEBUG Processing 23/235 atomic regions from SNP 6644 to 7246 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,690 DEBUG Processing 475/1023 atomic regions from SNP 142333 to 142933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,755 DEBUG Processing 443/1135 atomic regions from SNP 132880 to 133480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,756 DEBUG Processing 565/858 atomic regions from SNP 169356 to 169956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,822 DEBUG Processing 347/648 atomic regions from SNP 103946 to 104546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,885 DEBUG Processing 24/235 atomic regions from SNP 6946 to 7548 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,900 DEBUG Processing 544/897 atomic regions from SNP 163100 to 163700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,940 DEBUG Processing 476/1023 atomic regions from SNP 142633 to 143233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,017 DEBUG Processing 566/858 atomic regions from SNP 169656 to 170256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,032 DEBUG Processing 444/1135 atomic regions from SNP 133180 to 133780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,044 DEBUG Processing 348/648 atomic regions from SNP 104246 to 104846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,098 DEBUG Processing 25/235 atomic regions from SNP 7248 to 7850 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,136 DEBUG Processing 545/897 atomic regions from SNP 163400 to 164000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,192 DEBUG Processing 477/1023 atomic regions from SNP 142933 to 143533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,270 DEBUG Processing 349/648 atomic regions from SNP 104546 to 105146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,272 DEBUG Processing 567/858 atomic regions from SNP 169956 to 170556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,303 DEBUG Processing 445/1135 atomic regions from SNP 133480 to 134080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,312 DEBUG Processing 26/235 atomic regions from SNP 7550 to 8152 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,370 DEBUG Processing 546/897 atomic regions from SNP 163700 to 164300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,448 DEBUG Processing 478/1023 atomic regions from SNP 143233 to 143833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,501 DEBUG Processing 350/648 atomic regions from SNP 104846 to 105446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,528 DEBUG Processing 568/858 atomic regions from SNP 170256 to 170856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,531 DEBUG Processing 27/235 atomic regions from SNP 7852 to 8454 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,564 DEBUG Processing 446/1135 atomic regions from SNP 133780 to 134380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,606 DEBUG Processing 547/897 atomic regions from SNP 164000 to 164600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,705 DEBUG Processing 479/1023 atomic regions from SNP 143533 to 144133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,735 DEBUG Processing 351/648 atomic regions from SNP 105146 to 105746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,757 DEBUG Processing 28/235 atomic regions from SNP 8154 to 8756 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,761 DEBUG Processing 569/858 atomic regions from SNP 170556 to 171156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,823 DEBUG Processing 447/1135 atomic regions from SNP 134080 to 134680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,840 DEBUG Processing 548/897 atomic regions from SNP 164300 to 164900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,962 DEBUG Processing 480/1023 atomic regions from SNP 143833 to 144433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,966 DEBUG Processing 352/648 atomic regions from SNP 105446 to 106046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,983 DEBUG Processing 29/235 atomic regions from SNP 8456 to 9058 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,991 DEBUG Processing 570/858 atomic regions from SNP 170856 to 171456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,078 DEBUG Processing 549/897 atomic regions from SNP 164600 to 165200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,083 DEBUG Processing 448/1135 atomic regions from SNP 134380 to 134980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,196 DEBUG Processing 353/648 atomic regions from SNP 105746 to 106346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,208 DEBUG Processing 30/235 atomic regions from SNP 8758 to 9360 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,221 DEBUG Processing 481/1023 atomic regions from SNP 144133 to 144733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,223 DEBUG Processing 571/858 atomic regions from SNP 171156 to 171756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,318 DEBUG Processing 550/897 atomic regions from SNP 164900 to 165500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,344 DEBUG Processing 449/1135 atomic regions from SNP 134680 to 135280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,424 DEBUG Processing 354/648 atomic regions from SNP 106046 to 106646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,432 DEBUG Processing 31/235 atomic regions from SNP 9060 to 9662 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,452 DEBUG Processing 572/858 atomic regions from SNP 171456 to 172056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,477 DEBUG Processing 482/1023 atomic regions from SNP 144433 to 145033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,585 DEBUG Processing 551/897 atomic regions from SNP 165200 to 165800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,606 DEBUG Processing 450/1135 atomic regions from SNP 134980 to 135580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,656 DEBUG Processing 355/648 atomic regions from SNP 106346 to 106946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,660 DEBUG Processing 32/235 atomic regions from SNP 9362 to 9964 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,682 DEBUG Processing 573/858 atomic regions from SNP 171756 to 172356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,733 DEBUG Processing 483/1023 atomic regions from SNP 144733 to 145333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,856 DEBUG Processing 552/897 atomic regions from SNP 165500 to 166100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,875 DEBUG Processing 451/1135 atomic regions from SNP 135280 to 135880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,891 DEBUG Processing 33/235 atomic regions from SNP 9664 to 10266 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,893 DEBUG Processing 356/648 atomic regions from SNP 106646 to 107246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,917 DEBUG Processing 574/858 atomic regions from SNP 172056 to 172656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,986 DEBUG Processing 484/1023 atomic regions from SNP 145033 to 145633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,119 DEBUG Processing 34/235 atomic regions from SNP 9966 to 10568 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,120 DEBUG Processing 553/897 atomic regions from SNP 165800 to 166400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,126 DEBUG Processing 357/648 atomic regions from SNP 106946 to 107546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,143 DEBUG Processing 452/1135 atomic regions from SNP 135580 to 136180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,162 DEBUG Processing 575/858 atomic regions from SNP 172356 to 172956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,234 DEBUG Processing 485/1023 atomic regions from SNP 145333 to 145933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,347 DEBUG Processing 35/235 atomic regions from SNP 10268 to 10870 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,359 DEBUG Processing 358/648 atomic regions from SNP 107246 to 107846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,394 DEBUG Processing 554/897 atomic regions from SNP 166100 to 166700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,411 DEBUG Processing 453/1135 atomic regions from SNP 135880 to 136480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,419 DEBUG Processing 576/858 atomic regions from SNP 172656 to 173256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,510 DEBUG Processing 486/1023 atomic regions from SNP 145633 to 146233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,568 DEBUG Processing 36/235 atomic regions from SNP 10570 to 11172 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,587 DEBUG Processing 359/648 atomic regions from SNP 107546 to 108146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,657 DEBUG Processing 555/897 atomic regions from SNP 166400 to 167000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,668 DEBUG Processing 577/858 atomic regions from SNP 172956 to 173556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,676 DEBUG Processing 454/1135 atomic regions from SNP 136180 to 136780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,788 DEBUG Processing 37/235 atomic regions from SNP 10872 to 11474 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,799 DEBUG Processing 487/1023 atomic regions from SNP 145933 to 146533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,812 DEBUG Processing 360/648 atomic regions from SNP 107846 to 108446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,897 DEBUG Processing 578/858 atomic regions from SNP 173256 to 173856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,915 DEBUG Processing 556/897 atomic regions from SNP 166700 to 167300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,939 DEBUG Processing 455/1135 atomic regions from SNP 136480 to 137080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,007 DEBUG Processing 38/235 atomic regions from SNP 11174 to 11776 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,038 DEBUG Processing 361/648 atomic regions from SNP 108146 to 108746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,088 DEBUG Processing 488/1023 atomic regions from SNP 146233 to 146833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,124 DEBUG Processing 579/858 atomic regions from SNP 173556 to 174156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,195 DEBUG Processing 557/897 atomic regions from SNP 167000 to 167600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,204 DEBUG Processing 456/1135 atomic regions from SNP 136780 to 137380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,229 DEBUG Processing 39/235 atomic regions from SNP 11476 to 12078 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,279 DEBUG Processing 362/648 atomic regions from SNP 108446 to 109046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,348 DEBUG Processing 580/858 atomic regions from SNP 173856 to 174456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,362 DEBUG Processing 489/1023 atomic regions from SNP 146533 to 147133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,452 DEBUG Processing 40/235 atomic regions from SNP 11778 to 12380 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,468 DEBUG Processing 457/1135 atomic regions from SNP 137080 to 137680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,469 DEBUG Processing 558/897 atomic regions from SNP 167300 to 167900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,522 DEBUG Processing 363/648 atomic regions from SNP 108746 to 109346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,571 DEBUG Processing 581/858 atomic regions from SNP 174156 to 174756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,613 DEBUG Processing 490/1023 atomic regions from SNP 146833 to 147433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,674 DEBUG Processing 41/235 atomic regions from SNP 12080 to 12682 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,730 DEBUG Processing 458/1135 atomic regions from SNP 137380 to 137980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,741 DEBUG Processing 559/897 atomic regions from SNP 167600 to 168200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,776 DEBUG Processing 364/648 atomic regions from SNP 109046 to 109646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,800 DEBUG Processing 582/858 atomic regions from SNP 174456 to 175056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,864 DEBUG Processing 491/1023 atomic regions from SNP 147133 to 147733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,894 DEBUG Processing 42/235 atomic regions from SNP 12382 to 12984 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,991 DEBUG Processing 560/897 atomic regions from SNP 167900 to 168500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,995 DEBUG Processing 459/1135 atomic regions from SNP 137680 to 138280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,026 DEBUG Processing 365/648 atomic regions from SNP 109346 to 109946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,037 DEBUG Processing 583/858 atomic regions from SNP 174756 to 175356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,111 DEBUG Processing 43/235 atomic regions from SNP 12684 to 13286 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,115 DEBUG Processing 492/1023 atomic regions from SNP 147433 to 148033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,248 DEBUG Processing 561/897 atomic regions from SNP 168200 to 168800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,260 DEBUG Processing 460/1135 atomic regions from SNP 137980 to 138580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,271 DEBUG Processing 584/858 atomic regions from SNP 175056 to 175656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,272 DEBUG Processing 366/648 atomic regions from SNP 109646 to 110246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,335 DEBUG Processing 44/235 atomic regions from SNP 12986 to 13588 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,370 DEBUG Processing 493/1023 atomic regions from SNP 147733 to 148333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,506 DEBUG Processing 585/858 atomic regions from SNP 175356 to 175956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,519 DEBUG Processing 367/648 atomic regions from SNP 109946 to 110546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,523 DEBUG Processing 562/897 atomic regions from SNP 168500 to 169100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,527 DEBUG Processing 461/1135 atomic regions from SNP 138280 to 138880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,564 DEBUG Processing 45/235 atomic regions from SNP 13288 to 13890 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,625 DEBUG Processing 494/1023 atomic regions from SNP 148033 to 148633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,730 DEBUG Processing 586/858 atomic regions from SNP 175656 to 176256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,766 DEBUG Processing 368/648 atomic regions from SNP 110246 to 110846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,777 DEBUG Processing 563/897 atomic regions from SNP 168800 to 169400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,795 DEBUG Processing 462/1135 atomic regions from SNP 138580 to 139180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,797 DEBUG Processing 46/235 atomic regions from SNP 13590 to 14192 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,882 DEBUG Processing 495/1023 atomic regions from SNP 148333 to 148933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,963 DEBUG Processing 587/858 atomic regions from SNP 175956 to 176556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,011 DEBUG Processing 369/648 atomic regions from SNP 110546 to 111146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,011 DEBUG Processing 564/897 atomic regions from SNP 169100 to 169700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,025 DEBUG Processing 47/235 atomic regions from SNP 13892 to 14494 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,065 DEBUG Processing 463/1135 atomic regions from SNP 138880 to 139480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,135 DEBUG Processing 496/1023 atomic regions from SNP 148633 to 149233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,204 DEBUG Processing 588/858 atomic regions from SNP 176256 to 176856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,246 DEBUG Processing 565/897 atomic regions from SNP 169400 to 170000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,274 DEBUG Processing 370/648 atomic regions from SNP 110846 to 111446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,278 DEBUG Processing 48/235 atomic regions from SNP 14194 to 14796 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,338 DEBUG Processing 464/1135 atomic regions from SNP 139180 to 139780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,391 DEBUG Processing 497/1023 atomic regions from SNP 148933 to 149533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,435 DEBUG Processing 589/858 atomic regions from SNP 176556 to 177156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,477 DEBUG Processing 566/897 atomic regions from SNP 169700 to 170300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,527 DEBUG Processing 49/235 atomic regions from SNP 14496 to 15098 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,529 DEBUG Processing 371/648 atomic regions from SNP 111146 to 111746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,606 DEBUG Processing 465/1135 atomic regions from SNP 139480 to 140080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,652 DEBUG Processing 498/1023 atomic regions from SNP 149233 to 149833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,688 DEBUG Processing 590/858 atomic regions from SNP 176856 to 177456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,731 DEBUG Processing 567/897 atomic regions from SNP 170000 to 170600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,749 DEBUG Processing 50/235 atomic regions from SNP 14798 to 15400 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,762 DEBUG Processing 372/648 atomic regions from SNP 111446 to 112046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,869 DEBUG Processing 466/1135 atomic regions from SNP 139780 to 140380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,913 DEBUG Processing 499/1023 atomic regions from SNP 149533 to 150133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,951 DEBUG Processing 591/858 atomic regions from SNP 177156 to 177756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,981 DEBUG Processing 51/235 atomic regions from SNP 15100 to 15702 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,989 DEBUG Processing 373/648 atomic regions from SNP 111746 to 112346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,999 DEBUG Processing 568/897 atomic regions from SNP 170300 to 170900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,143 DEBUG Processing 467/1135 atomic regions from SNP 140080 to 140680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,177 DEBUG Processing 500/1023 atomic regions from SNP 149833 to 150433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,191 DEBUG Processing 592/858 atomic regions from SNP 177456 to 178056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,213 DEBUG Processing 52/235 atomic regions from SNP 15402 to 16004 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,218 DEBUG Processing 374/648 atomic regions from SNP 112046 to 112646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,268 DEBUG Processing 569/897 atomic regions from SNP 170600 to 171200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,418 DEBUG Processing 468/1135 atomic regions from SNP 140380 to 140980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,446 DEBUG Processing 593/858 atomic regions from SNP 177756 to 178356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,450 DEBUG Processing 501/1023 atomic regions from SNP 150133 to 150733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,457 DEBUG Processing 53/235 atomic regions from SNP 15704 to 16306 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,458 DEBUG Processing 375/648 atomic regions from SNP 112346 to 112946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,524 DEBUG Processing 570/897 atomic regions from SNP 170900 to 171500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,696 DEBUG Processing 54/235 atomic regions from SNP 16006 to 16608 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,707 DEBUG Processing 594/858 atomic regions from SNP 178056 to 178656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,717 DEBUG Processing 376/648 atomic regions from SNP 112646 to 113246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,721 DEBUG Processing 469/1135 atomic regions from SNP 140680 to 141280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,726 DEBUG Processing 502/1023 atomic regions from SNP 150433 to 151033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,774 DEBUG Processing 571/897 atomic regions from SNP 171200 to 171800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,935 DEBUG Processing 55/235 atomic regions from SNP 16308 to 16910 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,978 DEBUG Processing 595/858 atomic regions from SNP 178356 to 178956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,978 DEBUG Processing 377/648 atomic regions from SNP 112946 to 113546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,004 DEBUG Processing 503/1023 atomic regions from SNP 150733 to 151333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,030 DEBUG Processing 470/1135 atomic regions from SNP 140980 to 141580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,048 DEBUG Processing 572/897 atomic regions from SNP 171500 to 172100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,178 DEBUG Processing 56/235 atomic regions from SNP 16610 to 17212 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,229 DEBUG Processing 378/648 atomic regions from SNP 113246 to 113846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,238 DEBUG Processing 596/858 atomic regions from SNP 178656 to 179256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,276 DEBUG Processing 504/1023 atomic regions from SNP 151033 to 151633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,305 DEBUG Processing 471/1135 atomic regions from SNP 141280 to 141880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,316 DEBUG Processing 573/897 atomic regions from SNP 171800 to 172400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,405 DEBUG Processing 57/235 atomic regions from SNP 16912 to 17514 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,472 DEBUG Processing 379/648 atomic regions from SNP 113546 to 114146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,475 DEBUG Processing 597/858 atomic regions from SNP 178956 to 179556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,538 DEBUG Processing 505/1023 atomic regions from SNP 151333 to 151933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,564 DEBUG Processing 574/897 atomic regions from SNP 172100 to 172700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,572 DEBUG Processing 472/1135 atomic regions from SNP 141580 to 142180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,628 DEBUG Processing 58/235 atomic regions from SNP 17214 to 17816 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,701 DEBUG Processing 598/858 atomic regions from SNP 179256 to 179856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,722 DEBUG Processing 380/648 atomic regions from SNP 113846 to 114446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,797 DEBUG Processing 506/1023 atomic regions from SNP 151633 to 152233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,831 DEBUG Processing 575/897 atomic regions from SNP 172400 to 173000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,841 DEBUG Processing 473/1135 atomic regions from SNP 141880 to 142480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,856 DEBUG Processing 59/235 atomic regions from SNP 17516 to 18117 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,927 DEBUG Processing 599/858 atomic regions from SNP 179556 to 180156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,958 DEBUG Processing 381/648 atomic regions from SNP 114146 to 114746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,058 DEBUG Processing 507/1023 atomic regions from SNP 151933 to 152533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,088 DEBUG Processing 60/235 atomic regions from SNP 17817 to 18418 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,101 DEBUG Processing 576/897 atomic regions from SNP 172700 to 173300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,113 DEBUG Processing 474/1135 atomic regions from SNP 142180 to 142780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,153 DEBUG Processing 600/858 atomic regions from SNP 179856 to 180456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,181 DEBUG Processing 382/648 atomic regions from SNP 114446 to 115046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,315 DEBUG Processing 508/1023 atomic regions from SNP 152233 to 152833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,332 DEBUG Processing 61/235 atomic regions from SNP 18118 to 18719 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,373 DEBUG Processing 577/897 atomic regions from SNP 173000 to 173600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,384 DEBUG Processing 475/1135 atomic regions from SNP 142480 to 143080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,389 DEBUG Processing 601/858 atomic regions from SNP 180156 to 180756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,412 DEBUG Processing 383/648 atomic regions from SNP 114746 to 115346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,558 DEBUG Processing 62/235 atomic regions from SNP 18419 to 19020 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,575 DEBUG Processing 509/1023 atomic regions from SNP 152533 to 153133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,639 DEBUG Processing 602/858 atomic regions from SNP 180456 to 181056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,650 DEBUG Processing 384/648 atomic regions from SNP 115046 to 115646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,657 DEBUG Processing 476/1135 atomic regions from SNP 142780 to 143380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,663 DEBUG Processing 578/897 atomic regions from SNP 173300 to 173900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,780 DEBUG Processing 63/235 atomic regions from SNP 18720 to 19321 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,833 DEBUG Processing 510/1023 atomic regions from SNP 152833 to 153433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,882 DEBUG Processing 385/648 atomic regions from SNP 115346 to 115946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,898 DEBUG Processing 603/858 atomic regions from SNP 180756 to 181356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,925 DEBUG Processing 477/1135 atomic regions from SNP 143080 to 143680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,933 DEBUG Processing 579/897 atomic regions from SNP 173600 to 174200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,998 DEBUG Processing 64/235 atomic regions from SNP 19021 to 19622 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,088 DEBUG Processing 511/1023 atomic regions from SNP 153133 to 153733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,112 DEBUG Processing 386/648 atomic regions from SNP 115646 to 116246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,155 DEBUG Processing 604/858 atomic regions from SNP 181056 to 181656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,195 DEBUG Processing 478/1135 atomic regions from SNP 143380 to 143980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,197 DEBUG Processing 580/897 atomic regions from SNP 173900 to 174500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,218 DEBUG Processing 65/235 atomic regions from SNP 19322 to 19923 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,343 DEBUG Processing 512/1023 atomic regions from SNP 153433 to 154033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,343 DEBUG Processing 387/648 atomic regions from SNP 115946 to 116546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,420 DEBUG Processing 605/858 atomic regions from SNP 181356 to 181956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,440 DEBUG Processing 581/897 atomic regions from SNP 174200 to 174800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,442 DEBUG Processing 66/235 atomic regions from SNP 19623 to 20224 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,460 DEBUG Processing 479/1135 atomic regions from SNP 143680 to 144280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,572 DEBUG Processing 388/648 atomic regions from SNP 116246 to 116846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,599 DEBUG Processing 513/1023 atomic regions from SNP 153733 to 154333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,664 DEBUG Processing 67/235 atomic regions from SNP 19924 to 20525 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,680 DEBUG Processing 582/897 atomic regions from SNP 174500 to 175100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,681 DEBUG Processing 606/858 atomic regions from SNP 181656 to 182256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,724 DEBUG Processing 480/1135 atomic regions from SNP 143980 to 144580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,800 DEBUG Processing 389/648 atomic regions from SNP 116546 to 117146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,857 DEBUG Processing 514/1023 atomic regions from SNP 154033 to 154633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,887 DEBUG Processing 68/235 atomic regions from SNP 20225 to 20826 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,931 DEBUG Processing 583/897 atomic regions from SNP 174800 to 175400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,934 DEBUG Processing 607/858 atomic regions from SNP 181956 to 182556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,005 DEBUG Processing 481/1135 atomic regions from SNP 144280 to 144880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,028 DEBUG Processing 390/648 atomic regions from SNP 116846 to 117446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,110 DEBUG Processing 69/235 atomic regions from SNP 20526 to 21127 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,118 DEBUG Processing 515/1023 atomic regions from SNP 154333 to 154933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,164 DEBUG Processing 608/858 atomic regions from SNP 182256 to 182856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,203 DEBUG Processing 584/897 atomic regions from SNP 175100 to 175700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,252 DEBUG Processing 391/648 atomic regions from SNP 117146 to 117746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,292 DEBUG Processing 482/1135 atomic regions from SNP 144580 to 145180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,338 DEBUG Processing 70/235 atomic regions from SNP 20827 to 21428 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,383 DEBUG Processing 516/1023 atomic regions from SNP 154633 to 155233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,410 DEBUG Processing 609/858 atomic regions from SNP 182556 to 183156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,474 DEBUG Processing 585/897 atomic regions from SNP 175400 to 176000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,481 DEBUG Processing 392/648 atomic regions from SNP 117446 to 118046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,565 DEBUG Processing 71/235 atomic regions from SNP 21128 to 21729 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,584 DEBUG Processing 483/1135 atomic regions from SNP 144880 to 145480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,653 DEBUG Processing 610/858 atomic regions from SNP 182856 to 183456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,655 DEBUG Processing 517/1023 atomic regions from SNP 154933 to 155533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,706 DEBUG Processing 393/648 atomic regions from SNP 117746 to 118346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,723 DEBUG Processing 586/897 atomic regions from SNP 175700 to 176300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,787 DEBUG Processing 72/235 atomic regions from SNP 21429 to 22030 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,858 DEBUG Processing 484/1135 atomic regions from SNP 145180 to 145780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,884 DEBUG Processing 611/858 atomic regions from SNP 183156 to 183756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,934 DEBUG Processing 518/1023 atomic regions from SNP 155233 to 155833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,937 DEBUG Processing 394/648 atomic regions from SNP 118046 to 118646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,965 DEBUG Processing 587/897 atomic regions from SNP 176000 to 176600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,007 DEBUG Processing 73/235 atomic regions from SNP 21730 to 22331 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,111 DEBUG Processing 612/858 atomic regions from SNP 183456 to 184056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,120 DEBUG Processing 485/1135 atomic regions from SNP 145480 to 146080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,169 DEBUG Processing 395/648 atomic regions from SNP 118346 to 118946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,212 DEBUG Processing 588/897 atomic regions from SNP 176300 to 176900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,213 DEBUG Processing 519/1023 atomic regions from SNP 155533 to 156133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,234 DEBUG Processing 74/235 atomic regions from SNP 22031 to 22632 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,334 DEBUG Processing 613/858 atomic regions from SNP 183756 to 184356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,392 DEBUG Processing 486/1135 atomic regions from SNP 145780 to 146380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,395 DEBUG Processing 396/648 atomic regions from SNP 118646 to 119246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,459 DEBUG Processing 75/235 atomic regions from SNP 22332 to 22933 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,475 DEBUG Processing 589/897 atomic regions from SNP 176600 to 177200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,502 DEBUG Processing 520/1023 atomic regions from SNP 155833 to 156433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,558 DEBUG Processing 614/858 atomic regions from SNP 184056 to 184656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,619 DEBUG Processing 397/648 atomic regions from SNP 118946 to 119546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,687 DEBUG Processing 487/1135 atomic regions from SNP 146080 to 146680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,691 DEBUG Processing 76/235 atomic regions from SNP 22633 to 23234 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,736 DEBUG Processing 590/897 atomic regions from SNP 176900 to 177500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,789 DEBUG Processing 615/858 atomic regions from SNP 184356 to 184956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,802 DEBUG Processing 521/1023 atomic regions from SNP 156133 to 156733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,846 DEBUG Processing 398/648 atomic regions from SNP 119246 to 119846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,911 DEBUG Processing 77/235 atomic regions from SNP 22934 to 23535 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,984 DEBUG Processing 488/1135 atomic regions from SNP 146380 to 146980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,992 DEBUG Processing 591/897 atomic regions from SNP 177200 to 177800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,044 DEBUG Processing 616/858 atomic regions from SNP 184656 to 185256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,074 DEBUG Processing 399/648 atomic regions from SNP 119546 to 120146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,088 DEBUG Processing 522/1023 atomic regions from SNP 156433 to 157033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,125 DEBUG Processing 78/235 atomic regions from SNP 23235 to 23836 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,248 DEBUG Processing 592/897 atomic regions from SNP 177500 to 178100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,274 DEBUG Processing 489/1135 atomic regions from SNP 146680 to 147280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,305 DEBUG Processing 617/858 atomic regions from SNP 184956 to 185556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,308 DEBUG Processing 400/648 atomic regions from SNP 119846 to 120446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,349 DEBUG Processing 79/235 atomic regions from SNP 23536 to 24137 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,375 DEBUG Processing 523/1023 atomic regions from SNP 156733 to 157333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,523 DEBUG Processing 593/897 atomic regions from SNP 177800 to 178400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,540 DEBUG Processing 618/858 atomic regions from SNP 185256 to 185856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,544 DEBUG Processing 401/648 atomic regions from SNP 120146 to 120746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,561 DEBUG Processing 490/1135 atomic regions from SNP 146980 to 147580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,585 DEBUG Processing 80/235 atomic regions from SNP 23837 to 24438 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,652 DEBUG Processing 524/1023 atomic regions from SNP 157033 to 157633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,774 DEBUG Processing 619/858 atomic regions from SNP 185556 to 186156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,778 DEBUG Processing 402/648 atomic regions from SNP 120446 to 121046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,809 DEBUG Processing 594/897 atomic regions from SNP 178100 to 178700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,832 DEBUG Processing 491/1135 atomic regions from SNP 147280 to 147880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,835 DEBUG Processing 81/235 atomic regions from SNP 24138 to 24739 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,920 DEBUG Processing 525/1023 atomic regions from SNP 157333 to 157933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,004 DEBUG Processing 620/858 atomic regions from SNP 185856 to 186456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,008 DEBUG Processing 403/648 atomic regions from SNP 120746 to 121346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,079 DEBUG Processing 82/235 atomic regions from SNP 24439 to 25040 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,088 DEBUG Processing 595/897 atomic regions from SNP 178400 to 179000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,121 DEBUG Processing 492/1135 atomic regions from SNP 147580 to 148180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,193 DEBUG Processing 526/1023 atomic regions from SNP 157633 to 158233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,226 DEBUG Processing 621/858 atomic regions from SNP 186156 to 186756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,232 DEBUG Processing 404/648 atomic regions from SNP 121046 to 121646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,308 DEBUG Processing 83/235 atomic regions from SNP 24740 to 25341 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,364 DEBUG Processing 596/897 atomic regions from SNP 178700 to 179300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,417 DEBUG Processing 493/1135 atomic regions from SNP 147880 to 148480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,448 DEBUG Processing 622/858 atomic regions from SNP 186456 to 187056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,452 DEBUG Processing 405/648 atomic regions from SNP 121346 to 121946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,481 DEBUG Processing 527/1023 atomic regions from SNP 157933 to 158533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,533 DEBUG Processing 84/235 atomic regions from SNP 25041 to 25642 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,651 DEBUG Processing 597/897 atomic regions from SNP 179000 to 179600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,676 DEBUG Processing 623/858 atomic regions from SNP 186756 to 187356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,681 DEBUG Processing 406/648 atomic regions from SNP 121646 to 122246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,701 DEBUG Processing 494/1135 atomic regions from SNP 148180 to 148780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,753 DEBUG Processing 85/235 atomic regions from SNP 25342 to 25943 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,761 DEBUG Processing 528/1023 atomic regions from SNP 158233 to 158833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,905 DEBUG Processing 624/858 atomic regions from SNP 187056 to 187656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,908 DEBUG Processing 407/648 atomic regions from SNP 121946 to 122546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,937 DEBUG Processing 598/897 atomic regions from SNP 179300 to 179900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,976 DEBUG Processing 86/235 atomic regions from SNP 25643 to 26244 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,985 DEBUG Processing 495/1135 atomic regions from SNP 148480 to 149080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,045 DEBUG Processing 529/1023 atomic regions from SNP 158533 to 159133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,133 DEBUG Processing 408/648 atomic regions from SNP 122246 to 122846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,136 DEBUG Processing 625/858 atomic regions from SNP 187356 to 187956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,199 DEBUG Processing 87/235 atomic regions from SNP 25944 to 26545 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,224 DEBUG Processing 599/897 atomic regions from SNP 179600 to 180200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,287 DEBUG Processing 496/1135 atomic regions from SNP 148780 to 149380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,325 DEBUG Processing 530/1023 atomic regions from SNP 158833 to 159433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,358 DEBUG Processing 409/648 atomic regions from SNP 122546 to 123146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,386 DEBUG Processing 626/858 atomic regions from SNP 187656 to 188256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,420 DEBUG Processing 88/235 atomic regions from SNP 26245 to 26846 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,511 DEBUG Processing 600/897 atomic regions from SNP 179900 to 180500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,575 DEBUG Processing 497/1135 atomic regions from SNP 149080 to 149680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,579 DEBUG Processing 531/1023 atomic regions from SNP 159133 to 159733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,615 DEBUG Processing 410/648 atomic regions from SNP 122846 to 123446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,642 DEBUG Processing 89/235 atomic regions from SNP 26546 to 27147 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,647 DEBUG Processing 627/858 atomic regions from SNP 187956 to 188556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,800 DEBUG Processing 601/897 atomic regions from SNP 180200 to 180800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,840 DEBUG Processing 532/1023 atomic regions from SNP 159433 to 160033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,860 DEBUG Processing 498/1135 atomic regions from SNP 149380 to 149980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,866 DEBUG Processing 411/648 atomic regions from SNP 123146 to 123746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,870 DEBUG Processing 90/235 atomic regions from SNP 26847 to 27448 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,915 DEBUG Processing 628/858 atomic regions from SNP 188256 to 188856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,082 DEBUG Processing 602/897 atomic regions from SNP 180500 to 181100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,097 DEBUG Processing 91/235 atomic regions from SNP 27148 to 27749 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,099 DEBUG Processing 533/1023 atomic regions from SNP 159733 to 160333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,109 DEBUG Processing 412/648 atomic regions from SNP 123446 to 124046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,153 DEBUG Processing 499/1135 atomic regions from SNP 149680 to 150280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,181 DEBUG Processing 629/858 atomic regions from SNP 188556 to 189156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,318 DEBUG Processing 92/235 atomic regions from SNP 27449 to 28050 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,336 DEBUG Processing 413/648 atomic regions from SNP 123746 to 124346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,353 DEBUG Processing 534/1023 atomic regions from SNP 160033 to 160633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,357 DEBUG Processing 603/897 atomic regions from SNP 180800 to 181400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,439 DEBUG Processing 630/858 atomic regions from SNP 188856 to 189456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,445 DEBUG Processing 500/1135 atomic regions from SNP 149980 to 150580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,551 DEBUG Processing 93/235 atomic regions from SNP 27750 to 28351 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,582 DEBUG Processing 414/648 atomic regions from SNP 124046 to 124646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,605 DEBUG Processing 535/1023 atomic regions from SNP 160333 to 160933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,629 DEBUG Processing 604/897 atomic regions from SNP 181100 to 181700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,703 DEBUG Processing 631/858 atomic regions from SNP 189156 to 189756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,740 DEBUG Processing 501/1135 atomic regions from SNP 150280 to 150880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,778 DEBUG Processing 94/235 atomic regions from SNP 28051 to 28652 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,838 DEBUG Processing 415/648 atomic regions from SNP 124346 to 124946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,858 DEBUG Processing 536/1023 atomic regions from SNP 160633 to 161233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,874 DEBUG Processing 605/897 atomic regions from SNP 181400 to 182000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,969 DEBUG Processing 632/858 atomic regions from SNP 189456 to 190056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,002 DEBUG Processing 95/235 atomic regions from SNP 28352 to 28953 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,005 DEBUG Processing 502/1135 atomic regions from SNP 150580 to 151180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,094 DEBUG Processing 416/648 atomic regions from SNP 124646 to 125246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,114 DEBUG Processing 537/1023 atomic regions from SNP 160933 to 161533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,118 DEBUG Processing 606/897 atomic regions from SNP 181700 to 182300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,223 DEBUG Processing 96/235 atomic regions from SNP 28653 to 29254 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,228 DEBUG Processing 633/858 atomic regions from SNP 189756 to 190356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,270 DEBUG Processing 503/1135 atomic regions from SNP 150880 to 151480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,332 DEBUG Processing 417/648 atomic regions from SNP 124946 to 125546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,366 DEBUG Processing 607/897 atomic regions from SNP 182000 to 182600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,372 DEBUG Processing 538/1023 atomic regions from SNP 161233 to 161833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,446 DEBUG Processing 97/235 atomic regions from SNP 28954 to 29555 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,493 DEBUG Processing 634/858 atomic regions from SNP 190056 to 190656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,534 DEBUG Processing 504/1135 atomic regions from SNP 151180 to 151780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,572 DEBUG Processing 418/648 atomic regions from SNP 125246 to 125846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,611 DEBUG Processing 608/897 atomic regions from SNP 182300 to 182900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,627 DEBUG Processing 539/1023 atomic regions from SNP 161533 to 162133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,667 DEBUG Processing 98/235 atomic regions from SNP 29255 to 29856 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,762 DEBUG Processing 635/858 atomic regions from SNP 190356 to 190956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,800 DEBUG Processing 505/1135 atomic regions from SNP 151480 to 152080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,837 DEBUG Processing 419/648 atomic regions from SNP 125546 to 126146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,862 DEBUG Processing 609/897 atomic regions from SNP 182600 to 183200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,891 DEBUG Processing 99/235 atomic regions from SNP 29556 to 30157 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,897 DEBUG Processing 540/1023 atomic regions from SNP 161833 to 162433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,032 DEBUG Processing 636/858 atomic regions from SNP 190656 to 191256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,064 DEBUG Processing 506/1135 atomic regions from SNP 151780 to 152380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,104 DEBUG Processing 420/648 atomic regions from SNP 125846 to 126446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,112 DEBUG Processing 610/897 atomic regions from SNP 182900 to 183500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,120 DEBUG Processing 100/235 atomic regions from SNP 29857 to 30458 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,182 DEBUG Processing 541/1023 atomic regions from SNP 162133 to 162733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,308 DEBUG Processing 637/858 atomic regions from SNP 190956 to 191556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,340 DEBUG Processing 507/1135 atomic regions from SNP 152080 to 152680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,352 DEBUG Processing 101/235 atomic regions from SNP 30158 to 30759 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,357 DEBUG Processing 611/897 atomic regions from SNP 183200 to 183800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,359 DEBUG Processing 421/648 atomic regions from SNP 126146 to 126746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,446 DEBUG Processing 542/1023 atomic regions from SNP 162433 to 163033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,569 DEBUG Processing 638/858 atomic regions from SNP 191256 to 191856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,578 DEBUG Processing 102/235 atomic regions from SNP 30459 to 31060 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,607 DEBUG Processing 612/897 atomic regions from SNP 183500 to 184100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,609 DEBUG Processing 508/1135 atomic regions from SNP 152380 to 152980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,628 DEBUG Processing 422/648 atomic regions from SNP 126446 to 127046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,703 DEBUG Processing 543/1023 atomic regions from SNP 162733 to 163333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,797 DEBUG Processing 639/858 atomic regions from SNP 191556 to 192156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,802 DEBUG Processing 103/235 atomic regions from SNP 30760 to 31361 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,851 DEBUG Processing 613/897 atomic regions from SNP 183800 to 184400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,875 DEBUG Processing 509/1135 atomic regions from SNP 152680 to 153280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,888 DEBUG Processing 423/648 atomic regions from SNP 126746 to 127346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,959 DEBUG Processing 544/1023 atomic regions from SNP 163033 to 163633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,025 DEBUG Processing 104/235 atomic regions from SNP 31061 to 31662 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,044 DEBUG Processing 640/858 atomic regions from SNP 191856 to 192456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,101 DEBUG Processing 614/897 atomic regions from SNP 184100 to 184700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,138 DEBUG Processing 424/648 atomic regions from SNP 127046 to 127646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,141 DEBUG Processing 510/1135 atomic regions from SNP 152980 to 153580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,222 DEBUG Processing 545/1023 atomic regions from SNP 163333 to 163933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,246 DEBUG Processing 105/235 atomic regions from SNP 31362 to 31963 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,273 DEBUG Processing 641/858 atomic regions from SNP 192156 to 192756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,344 DEBUG Processing 615/897 atomic regions from SNP 184400 to 185000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,381 DEBUG Processing 425/648 atomic regions from SNP 127346 to 127946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,414 DEBUG Processing 511/1135 atomic regions from SNP 153280 to 153880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,474 DEBUG Processing 106/235 atomic regions from SNP 31663 to 32264 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,484 DEBUG Processing 546/1023 atomic regions from SNP 163633 to 164233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,504 DEBUG Processing 642/858 atomic regions from SNP 192456 to 193056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,585 DEBUG Processing 616/897 atomic regions from SNP 184700 to 185300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,629 DEBUG Processing 426/648 atomic regions from SNP 127646 to 128246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,705 DEBUG Processing 107/235 atomic regions from SNP 31964 to 32565 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,713 DEBUG Processing 512/1135 atomic regions from SNP 153580 to 154180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,747 DEBUG Processing 643/858 atomic regions from SNP 192756 to 193356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,755 DEBUG Processing 547/1023 atomic regions from SNP 163933 to 164533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,831 DEBUG Processing 617/897 atomic regions from SNP 185000 to 185600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,896 DEBUG Processing 427/648 atomic regions from SNP 127946 to 128546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,931 DEBUG Processing 108/235 atomic regions from SNP 32265 to 32866 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,991 DEBUG Processing 644/858 atomic regions from SNP 193056 to 193656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,002 DEBUG Processing 513/1135 atomic regions from SNP 153880 to 154480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,029 DEBUG Processing 548/1023 atomic regions from SNP 164233 to 164833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,084 DEBUG Processing 618/897 atomic regions from SNP 185300 to 185900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,147 DEBUG Processing 428/648 atomic regions from SNP 128246 to 128846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,158 DEBUG Processing 109/235 atomic regions from SNP 32566 to 33167 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,228 DEBUG Processing 645/858 atomic regions from SNP 193356 to 193956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,297 DEBUG Processing 549/1023 atomic regions from SNP 164533 to 165133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,298 DEBUG Processing 514/1135 atomic regions from SNP 154180 to 154780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,333 DEBUG Processing 619/897 atomic regions from SNP 185600 to 186200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,385 DEBUG Processing 110/235 atomic regions from SNP 32867 to 33468 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,402 DEBUG Processing 429/648 atomic regions from SNP 128546 to 129146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,457 DEBUG Processing 646/858 atomic regions from SNP 193656 to 194256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,558 DEBUG Processing 550/1023 atomic regions from SNP 164833 to 165433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,581 DEBUG Processing 515/1135 atomic regions from SNP 154480 to 155080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,586 DEBUG Processing 620/897 atomic regions from SNP 185900 to 186500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,620 DEBUG Processing 111/235 atomic regions from SNP 33168 to 33769 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,664 DEBUG Processing 430/648 atomic regions from SNP 128846 to 129446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,715 DEBUG Processing 647/858 atomic regions from SNP 193956 to 194556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,822 DEBUG Processing 551/1023 atomic regions from SNP 165133 to 165733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,841 DEBUG Processing 621/897 atomic regions from SNP 186200 to 186800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,854 DEBUG Processing 112/235 atomic regions from SNP 33469 to 34070 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,855 DEBUG Processing 516/1135 atomic regions from SNP 154780 to 155380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,915 DEBUG Processing 431/648 atomic regions from SNP 129146 to 129746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,974 DEBUG Processing 648/858 atomic regions from SNP 194256 to 194856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,083 DEBUG Processing 113/235 atomic regions from SNP 33770 to 34371 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,084 DEBUG Processing 552/1023 atomic regions from SNP 165433 to 166033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,085 DEBUG Processing 622/897 atomic regions from SNP 186500 to 187100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,130 DEBUG Processing 517/1135 atomic regions from SNP 155080 to 155680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,151 DEBUG Processing 432/648 atomic regions from SNP 129446 to 130046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,225 DEBUG Processing 649/858 atomic regions from SNP 194556 to 195156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,309 DEBUG Processing 114/235 atomic regions from SNP 34071 to 34672 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,327 DEBUG Processing 623/897 atomic regions from SNP 186800 to 187400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,347 DEBUG Processing 553/1023 atomic regions from SNP 165733 to 166333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,388 DEBUG Processing 433/648 atomic regions from SNP 129746 to 130346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,423 DEBUG Processing 518/1135 atomic regions from SNP 155380 to 155980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,459 DEBUG Processing 650/858 atomic regions from SNP 194856 to 195456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,527 DEBUG Processing 115/235 atomic regions from SNP 34372 to 34973 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,561 DEBUG Processing 624/897 atomic regions from SNP 187100 to 187700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,605 DEBUG Processing 554/1023 atomic regions from SNP 166033 to 166633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,642 DEBUG Processing 434/648 atomic regions from SNP 130046 to 130646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,696 DEBUG Processing 651/858 atomic regions from SNP 195156 to 195756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,729 DEBUG Processing 519/1135 atomic regions from SNP 155680 to 156280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,751 DEBUG Processing 116/235 atomic regions from SNP 34673 to 35274 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,797 DEBUG Processing 625/897 atomic regions from SNP 187400 to 188000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,868 DEBUG Processing 555/1023 atomic regions from SNP 166333 to 166933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,911 DEBUG Processing 435/648 atomic regions from SNP 130346 to 130946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,940 DEBUG Processing 652/858 atomic regions from SNP 195456 to 196056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,982 DEBUG Processing 117/235 atomic regions from SNP 34974 to 35575 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,038 DEBUG Processing 626/897 atomic regions from SNP 187700 to 188300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,038 DEBUG Processing 520/1135 atomic regions from SNP 155980 to 156580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,127 DEBUG Processing 556/1023 atomic regions from SNP 166633 to 167233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,162 DEBUG Processing 436/648 atomic regions from SNP 130646 to 131246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,185 DEBUG Processing 653/858 atomic regions from SNP 195756 to 196356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,210 DEBUG Processing 118/235 atomic regions from SNP 35275 to 35876 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,279 DEBUG Processing 627/897 atomic regions from SNP 188000 to 188600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,319 DEBUG Processing 521/1135 atomic regions from SNP 156280 to 156880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,394 DEBUG Processing 557/1023 atomic regions from SNP 166933 to 167533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,406 DEBUG Processing 437/648 atomic regions from SNP 130946 to 131546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,429 DEBUG Processing 654/858 atomic regions from SNP 196056 to 196656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,438 DEBUG Processing 119/235 atomic regions from SNP 35576 to 36177 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,520 DEBUG Processing 628/897 atomic regions from SNP 188300 to 188900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,594 DEBUG Processing 522/1135 atomic regions from SNP 156580 to 157180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,644 DEBUG Processing 438/648 atomic regions from SNP 131246 to 131846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,664 DEBUG Processing 558/1023 atomic regions from SNP 167233 to 167833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,665 DEBUG Processing 120/235 atomic regions from SNP 35877 to 36478 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,671 DEBUG Processing 655/858 atomic regions from SNP 196356 to 196956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,765 DEBUG Processing 629/897 atomic regions from SNP 188600 to 189200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,883 DEBUG Processing 523/1135 atomic regions from SNP 156880 to 157480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,885 DEBUG Processing 439/648 atomic regions from SNP 131546 to 132146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,901 DEBUG Processing 121/235 atomic regions from SNP 36178 to 36779 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,930 DEBUG Processing 656/858 atomic regions from SNP 196656 to 197256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,938 DEBUG Processing 559/1023 atomic regions from SNP 167533 to 168133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,011 DEBUG Processing 630/897 atomic regions from SNP 188900 to 189500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,118 DEBUG Processing 440/648 atomic regions from SNP 131846 to 132446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,129 DEBUG Processing 122/235 atomic regions from SNP 36479 to 37080 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,173 DEBUG Processing 524/1135 atomic regions from SNP 157180 to 157780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,175 DEBUG Processing 657/858 atomic regions from SNP 196956 to 197556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,209 DEBUG Processing 560/1023 atomic regions from SNP 167833 to 168433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,260 DEBUG Processing 631/897 atomic regions from SNP 189200 to 189800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,349 DEBUG Processing 441/648 atomic regions from SNP 132146 to 132746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,354 DEBUG Processing 123/235 atomic regions from SNP 36780 to 37381 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,413 DEBUG Processing 658/858 atomic regions from SNP 197256 to 197856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,460 DEBUG Processing 525/1135 atomic regions from SNP 157480 to 158080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,479 DEBUG Processing 561/1023 atomic regions from SNP 168133 to 168733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,510 DEBUG Processing 632/897 atomic regions from SNP 189500 to 190100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,576 DEBUG Processing 124/235 atomic regions from SNP 37081 to 37682 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,579 DEBUG Processing 442/648 atomic regions from SNP 132446 to 133046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,642 DEBUG Processing 659/858 atomic regions from SNP 197556 to 198156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,743 DEBUG Processing 562/1023 atomic regions from SNP 168433 to 169033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,744 DEBUG Processing 526/1135 atomic regions from SNP 157780 to 158380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,757 DEBUG Processing 633/897 atomic regions from SNP 189800 to 190400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,816 DEBUG Processing 443/648 atomic regions from SNP 132746 to 133346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,833 DEBUG Processing 125/235 atomic regions from SNP 37382 to 37983 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,868 DEBUG Processing 660/858 atomic regions from SNP 197856 to 198456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,004 DEBUG Processing 563/1023 atomic regions from SNP 168733 to 169333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,005 DEBUG Processing 634/897 atomic regions from SNP 190100 to 190700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,022 DEBUG Processing 527/1135 atomic regions from SNP 158080 to 158680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,077 DEBUG Processing 126/235 atomic regions from SNP 37683 to 38284 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,083 DEBUG Processing 444/648 atomic regions from SNP 133046 to 133646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,098 DEBUG Processing 661/858 atomic regions from SNP 198156 to 198756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,249 DEBUG Processing 635/897 atomic regions from SNP 190400 to 191000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,263 DEBUG Processing 564/1023 atomic regions from SNP 169033 to 169633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,313 DEBUG Processing 127/235 atomic regions from SNP 37984 to 38585 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,314 DEBUG Processing 528/1135 atomic regions from SNP 158380 to 158980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,340 DEBUG Processing 662/858 atomic regions from SNP 198456 to 199056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,356 DEBUG Processing 445/648 atomic regions from SNP 133346 to 133946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,494 DEBUG Processing 636/897 atomic regions from SNP 190700 to 191300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,526 DEBUG Processing 565/1023 atomic regions from SNP 169333 to 169933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,562 DEBUG Processing 128/235 atomic regions from SNP 38285 to 38886 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,584 DEBUG Processing 663/858 atomic regions from SNP 198756 to 199356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,619 DEBUG Processing 446/648 atomic regions from SNP 133646 to 134246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,619 DEBUG Processing 529/1135 atomic regions from SNP 158680 to 159280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,732 DEBUG Processing 637/897 atomic regions from SNP 191000 to 191600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,786 DEBUG Processing 566/1023 atomic regions from SNP 169633 to 170233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,798 DEBUG Processing 129/235 atomic regions from SNP 38586 to 39187 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,827 DEBUG Processing 664/858 atomic regions from SNP 199056 to 199656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,870 DEBUG Processing 447/648 atomic regions from SNP 133946 to 134546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,915 DEBUG Processing 530/1135 atomic regions from SNP 158980 to 159580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,969 DEBUG Processing 638/897 atomic regions from SNP 191300 to 191900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,026 DEBUG Processing 130/235 atomic regions from SNP 38887 to 39488 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,046 DEBUG Processing 567/1023 atomic regions from SNP 169933 to 170533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,068 DEBUG Processing 665/858 atomic regions from SNP 199356 to 199956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,110 DEBUG Processing 448/648 atomic regions from SNP 134246 to 134846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,212 DEBUG Processing 639/897 atomic regions from SNP 191600 to 192200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,212 DEBUG Processing 531/1135 atomic regions from SNP 159280 to 159880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,248 DEBUG Processing 131/235 atomic regions from SNP 39188 to 39789 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,310 DEBUG Processing 568/1023 atomic regions from SNP 170233 to 170833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,328 DEBUG Processing 666/858 atomic regions from SNP 199656 to 200256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,348 DEBUG Processing 449/648 atomic regions from SNP 134546 to 135146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,458 DEBUG Processing 640/897 atomic regions from SNP 191900 to 192500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,470 DEBUG Processing 132/235 atomic regions from SNP 39489 to 40090 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,507 DEBUG Processing 532/1135 atomic regions from SNP 159580 to 160180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,575 DEBUG Processing 569/1023 atomic regions from SNP 170533 to 171133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,579 DEBUG Processing 667/858 atomic regions from SNP 199956 to 200556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,580 DEBUG Processing 450/648 atomic regions from SNP 134846 to 135446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,698 DEBUG Processing 133/235 atomic regions from SNP 39790 to 40391 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,738 DEBUG Processing 641/897 atomic regions from SNP 192200 to 192800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,809 DEBUG Processing 533/1135 atomic regions from SNP 159880 to 160480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,818 DEBUG Processing 451/648 atomic regions from SNP 135146 to 135746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,832 DEBUG Processing 668/858 atomic regions from SNP 200256 to 200856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,843 DEBUG Processing 570/1023 atomic regions from SNP 170833 to 171433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,935 DEBUG Processing 134/235 atomic regions from SNP 40091 to 40692 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,013 DEBUG Processing 642/897 atomic regions from SNP 192500 to 193100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,051 DEBUG Processing 452/648 atomic regions from SNP 135446 to 136046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,099 DEBUG Processing 669/858 atomic regions from SNP 200556 to 201156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,107 DEBUG Processing 571/1023 atomic regions from SNP 171133 to 171733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,117 DEBUG Processing 534/1135 atomic regions from SNP 160180 to 160780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,176 DEBUG Processing 135/235 atomic regions from SNP 40392 to 40993 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,270 DEBUG Processing 643/897 atomic regions from SNP 192800 to 193400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,302 DEBUG Processing 453/648 atomic regions from SNP 135746 to 136346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,366 DEBUG Processing 670/858 atomic regions from SNP 200856 to 201456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,373 DEBUG Processing 572/1023 atomic regions from SNP 171433 to 172033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,416 DEBUG Processing 535/1135 atomic regions from SNP 160480 to 161080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,432 DEBUG Processing 136/235 atomic regions from SNP 40693 to 41294 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,525 DEBUG Processing 644/897 atomic regions from SNP 193100 to 193700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,543 DEBUG Processing 454/648 atomic regions from SNP 136046 to 136646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,614 DEBUG Processing 671/858 atomic regions from SNP 201156 to 201756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,633 DEBUG Processing 573/1023 atomic regions from SNP 171733 to 172333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,660 DEBUG Processing 137/235 atomic regions from SNP 40994 to 41595 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,684 DEBUG Processing 536/1135 atomic regions from SNP 160780 to 161380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,789 DEBUG Processing 455/648 atomic regions from SNP 136346 to 136946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,805 DEBUG Processing 645/897 atomic regions from SNP 193400 to 194000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,843 DEBUG Processing 672/858 atomic regions from SNP 201456 to 202056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,884 DEBUG Processing 138/235 atomic regions from SNP 41295 to 41896 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,892 DEBUG Processing 574/1023 atomic regions from SNP 172033 to 172633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,953 DEBUG Processing 537/1135 atomic regions from SNP 161080 to 161680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,030 DEBUG Processing 456/648 atomic regions from SNP 136646 to 137246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,089 DEBUG Processing 646/897 atomic regions from SNP 193700 to 194300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,103 DEBUG Processing 139/235 atomic regions from SNP 41596 to 42197 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,104 DEBUG Processing 673/858 atomic regions from SNP 201756 to 202356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,152 DEBUG Processing 575/1023 atomic regions from SNP 172333 to 172933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,219 DEBUG Processing 538/1135 atomic regions from SNP 161380 to 161980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,275 DEBUG Processing 457/648 atomic regions from SNP 136946 to 137546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,327 DEBUG Processing 140/235 atomic regions from SNP 41897 to 42498 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,360 DEBUG Processing 647/897 atomic regions from SNP 194000 to 194600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,371 DEBUG Processing 674/858 atomic regions from SNP 202056 to 202656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,413 DEBUG Processing 576/1023 atomic regions from SNP 172633 to 173233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,483 DEBUG Processing 539/1135 atomic regions from SNP 161680 to 162280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,525 DEBUG Processing 458/648 atomic regions from SNP 137246 to 137846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,558 DEBUG Processing 141/235 atomic regions from SNP 42198 to 42799 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,631 DEBUG Processing 648/897 atomic regions from SNP 194300 to 194900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,638 DEBUG Processing 675/858 atomic regions from SNP 202356 to 202956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,669 DEBUG Processing 577/1023 atomic regions from SNP 172933 to 173533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,747 DEBUG Processing 540/1135 atomic regions from SNP 161980 to 162580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,784 DEBUG Processing 459/648 atomic regions from SNP 137546 to 138146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,790 DEBUG Processing 142/235 atomic regions from SNP 42499 to 43100 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,875 DEBUG Processing 649/897 atomic regions from SNP 194600 to 195200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,911 DEBUG Processing 676/858 atomic regions from SNP 202656 to 203256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,926 DEBUG Processing 578/1023 atomic regions from SNP 173233 to 173833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,013 DEBUG Processing 541/1135 atomic regions from SNP 162280 to 162880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,017 DEBUG Processing 143/235 atomic regions from SNP 42800 to 43401 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,031 DEBUG Processing 460/648 atomic regions from SNP 137846 to 138446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,121 DEBUG Processing 650/897 atomic regions from SNP 194900 to 195500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,178 DEBUG Processing 677/858 atomic regions from SNP 202956 to 203556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,187 DEBUG Processing 579/1023 atomic regions from SNP 173533 to 174133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,251 DEBUG Processing 144/235 atomic regions from SNP 43101 to 43702 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,272 DEBUG Processing 461/648 atomic regions from SNP 138146 to 138746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,296 DEBUG Processing 542/1135 atomic regions from SNP 162580 to 163180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,358 DEBUG Processing 651/897 atomic regions from SNP 195200 to 195800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,440 DEBUG Processing 678/858 atomic regions from SNP 203256 to 203856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,455 DEBUG Processing 580/1023 atomic regions from SNP 173833 to 174433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,481 DEBUG Processing 145/235 atomic regions from SNP 43402 to 44003 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,507 DEBUG Processing 462/648 atomic regions from SNP 138446 to 139046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,565 DEBUG Processing 543/1135 atomic regions from SNP 162880 to 163480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,593 DEBUG Processing 652/897 atomic regions from SNP 195500 to 196100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,707 DEBUG Processing 679/858 atomic regions from SNP 203556 to 204156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,715 DEBUG Processing 146/235 atomic regions from SNP 43703 to 44304 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,724 DEBUG Processing 581/1023 atomic regions from SNP 174133 to 174733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,743 DEBUG Processing 463/648 atomic regions from SNP 138746 to 139346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,829 DEBUG Processing 544/1135 atomic regions from SNP 163180 to 163780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,832 DEBUG Processing 653/897 atomic regions from SNP 195800 to 196400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,947 DEBUG Processing 147/235 atomic regions from SNP 44004 to 44605 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,979 DEBUG Processing 680/858 atomic regions from SNP 203856 to 204456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,993 DEBUG Processing 582/1023 atomic regions from SNP 174433 to 175033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,008 DEBUG Processing 464/648 atomic regions from SNP 139046 to 139646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,075 DEBUG Processing 654/897 atomic regions from SNP 196100 to 196700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,093 DEBUG Processing 545/1135 atomic regions from SNP 163480 to 164080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,171 DEBUG Processing 148/235 atomic regions from SNP 44305 to 44906 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,241 DEBUG Processing 681/858 atomic regions from SNP 204156 to 204756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,255 DEBUG Processing 583/1023 atomic regions from SNP 174733 to 175333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,273 DEBUG Processing 465/648 atomic regions from SNP 139346 to 139946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,326 DEBUG Processing 655/897 atomic regions from SNP 196400 to 197000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,363 DEBUG Processing 546/1135 atomic regions from SNP 163780 to 164380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,395 DEBUG Processing 149/235 atomic regions from SNP 44606 to 45207 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,497 DEBUG Processing 682/858 atomic regions from SNP 204456 to 205056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,516 DEBUG Processing 584/1023 atomic regions from SNP 175033 to 175633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,531 DEBUG Processing 466/648 atomic regions from SNP 139646 to 140246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,585 DEBUG Processing 656/897 atomic regions from SNP 196700 to 197300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,620 DEBUG Processing 150/235 atomic regions from SNP 44907 to 45508 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,635 DEBUG Processing 547/1135 atomic regions from SNP 164080 to 164680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,757 DEBUG Processing 683/858 atomic regions from SNP 204756 to 205356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,779 DEBUG Processing 585/1023 atomic regions from SNP 175333 to 175933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,791 DEBUG Processing 467/648 atomic regions from SNP 139946 to 140546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,839 DEBUG Processing 657/897 atomic regions from SNP 197000 to 197600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,847 DEBUG Processing 151/235 atomic regions from SNP 45208 to 45809 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,902 DEBUG Processing 548/1135 atomic regions from SNP 164380 to 164980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,020 DEBUG Processing 684/858 atomic regions from SNP 205056 to 205656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,042 DEBUG Processing 468/648 atomic regions from SNP 140246 to 140846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,050 DEBUG Processing 586/1023 atomic regions from SNP 175633 to 176233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,078 DEBUG Processing 152/235 atomic regions from SNP 45509 to 46110 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,095 DEBUG Processing 658/897 atomic regions from SNP 197300 to 197900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,167 DEBUG Processing 549/1135 atomic regions from SNP 164680 to 165280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,288 DEBUG Processing 685/858 atomic regions from SNP 205356 to 205956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,293 DEBUG Processing 469/648 atomic regions from SNP 140546 to 141146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,306 DEBUG Processing 153/235 atomic regions from SNP 45810 to 46411 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,313 DEBUG Processing 587/1023 atomic regions from SNP 175933 to 176533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,344 DEBUG Processing 659/897 atomic regions from SNP 197600 to 198200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,431 DEBUG Processing 550/1135 atomic regions from SNP 164980 to 165580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,528 DEBUG Processing 470/648 atomic regions from SNP 140846 to 141446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,531 DEBUG Processing 154/235 atomic regions from SNP 46111 to 46712 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,549 DEBUG Processing 686/858 atomic regions from SNP 205656 to 206256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,574 DEBUG Processing 588/1023 atomic regions from SNP 176233 to 176833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,590 DEBUG Processing 660/897 atomic regions from SNP 197900 to 198500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,697 DEBUG Processing 551/1135 atomic regions from SNP 165280 to 165880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,756 DEBUG Processing 155/235 atomic regions from SNP 46412 to 47013 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,761 DEBUG Processing 471/648 atomic regions from SNP 141146 to 141746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,806 DEBUG Processing 687/858 atomic regions from SNP 205956 to 206556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,832 DEBUG Processing 661/897 atomic regions from SNP 198200 to 198800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,836 DEBUG Processing 589/1023 atomic regions from SNP 176533 to 177133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,962 DEBUG Processing 552/1135 atomic regions from SNP 165580 to 166180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,981 DEBUG Processing 156/235 atomic regions from SNP 46713 to 47314 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,003 DEBUG Processing 472/648 atomic regions from SNP 141446 to 142046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,060 DEBUG Processing 688/858 atomic regions from SNP 206256 to 206856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,077 DEBUG Processing 662/897 atomic regions from SNP 198500 to 199100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,099 DEBUG Processing 590/1023 atomic regions from SNP 176833 to 177433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,209 DEBUG Processing 157/235 atomic regions from SNP 47014 to 47615 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,232 DEBUG Processing 553/1135 atomic regions from SNP 165880 to 166480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,269 DEBUG Processing 473/648 atomic regions from SNP 141746 to 142346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,314 DEBUG Processing 689/858 atomic regions from SNP 206556 to 207156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,322 DEBUG Processing 663/897 atomic regions from SNP 198800 to 199400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,371 DEBUG Processing 591/1023 atomic regions from SNP 177133 to 177733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,433 DEBUG Processing 158/235 atomic regions from SNP 47315 to 47916 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,504 DEBUG Processing 554/1135 atomic regions from SNP 166180 to 166780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,545 DEBUG Processing 474/648 atomic regions from SNP 142046 to 142646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,570 DEBUG Processing 690/858 atomic regions from SNP 206856 to 207456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,573 DEBUG Processing 664/897 atomic regions from SNP 199100 to 199700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,650 DEBUG Processing 592/1023 atomic regions from SNP 177433 to 178033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,652 DEBUG Processing 159/235 atomic regions from SNP 47616 to 48217 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,780 DEBUG Processing 555/1135 atomic regions from SNP 166480 to 167080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,804 DEBUG Processing 475/648 atomic regions from SNP 142346 to 142946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,828 DEBUG Processing 665/897 atomic regions from SNP 199400 to 200000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,842 DEBUG Processing 691/858 atomic regions from SNP 207156 to 207756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,869 DEBUG Processing 160/235 atomic regions from SNP 47917 to 48518 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,933 DEBUG Processing 593/1023 atomic regions from SNP 177733 to 178333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,052 DEBUG Processing 476/648 atomic regions from SNP 142646 to 143246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,066 DEBUG Processing 556/1135 atomic regions from SNP 166780 to 167380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,083 DEBUG Processing 666/897 atomic regions from SNP 199700 to 200300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,096 DEBUG Processing 161/235 atomic regions from SNP 48218 to 48819 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,115 DEBUG Processing 692/858 atomic regions from SNP 207456 to 208056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,214 DEBUG Processing 594/1023 atomic regions from SNP 178033 to 178633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,293 DEBUG Processing 477/648 atomic regions from SNP 142946 to 143546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,329 DEBUG Processing 162/235 atomic regions from SNP 48519 to 49120 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,330 DEBUG Processing 667/897 atomic regions from SNP 200000 to 200600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,339 DEBUG Processing 557/1135 atomic regions from SNP 167080 to 167680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,392 DEBUG Processing 693/858 atomic regions from SNP 207756 to 208356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,488 DEBUG Processing 595/1023 atomic regions from SNP 178333 to 178933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,528 DEBUG Processing 478/648 atomic regions from SNP 143246 to 143846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,562 DEBUG Processing 163/235 atomic regions from SNP 48820 to 49421 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,570 DEBUG Processing 668/897 atomic regions from SNP 200300 to 200900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,613 DEBUG Processing 558/1135 atomic regions from SNP 167380 to 167980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,666 DEBUG Processing 694/858 atomic regions from SNP 208056 to 208656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,755 DEBUG Processing 596/1023 atomic regions from SNP 178633 to 179233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,775 DEBUG Processing 479/648 atomic regions from SNP 143546 to 144146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,787 DEBUG Processing 164/235 atomic regions from SNP 49121 to 49722 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,807 DEBUG Processing 669/897 atomic regions from SNP 200600 to 201200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,882 DEBUG Processing 559/1135 atomic regions from SNP 167680 to 168280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,917 DEBUG Processing 695/858 atomic regions from SNP 208356 to 208956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,014 DEBUG Processing 165/235 atomic regions from SNP 49422 to 50023 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,014 DEBUG Processing 480/648 atomic regions from SNP 143846 to 144446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,019 DEBUG Processing 597/1023 atomic regions from SNP 178933 to 179533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,047 DEBUG Processing 670/897 atomic regions from SNP 200900 to 201500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,147 DEBUG Processing 560/1135 atomic regions from SNP 167980 to 168580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,167 DEBUG Processing 696/858 atomic regions from SNP 208656 to 209256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,241 DEBUG Processing 166/235 atomic regions from SNP 49723 to 50324 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,247 DEBUG Processing 481/648 atomic regions from SNP 144146 to 144746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,284 DEBUG Processing 671/897 atomic regions from SNP 201200 to 201800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,288 DEBUG Processing 598/1023 atomic regions from SNP 179233 to 179833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,408 DEBUG Processing 697/858 atomic regions from SNP 208956 to 209556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,414 DEBUG Processing 561/1135 atomic regions from SNP 168280 to 168880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,469 DEBUG Processing 167/235 atomic regions from SNP 50024 to 50625 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,482 DEBUG Processing 482/648 atomic regions from SNP 144446 to 145046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,518 DEBUG Processing 672/897 atomic regions from SNP 201500 to 202100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,550 DEBUG Processing 599/1023 atomic regions from SNP 179533 to 180133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,661 DEBUG Processing 698/858 atomic regions from SNP 209256 to 209856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,681 DEBUG Processing 562/1135 atomic regions from SNP 168580 to 169180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,696 DEBUG Processing 168/235 atomic regions from SNP 50325 to 50926 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,714 DEBUG Processing 483/648 atomic regions from SNP 144746 to 145346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,754 DEBUG Processing 673/897 atomic regions from SNP 201800 to 202400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,809 DEBUG Processing 600/1023 atomic regions from SNP 179833 to 180433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,925 DEBUG Processing 169/235 atomic regions from SNP 50626 to 51227 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,932 DEBUG Processing 699/858 atomic regions from SNP 209556 to 210156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,950 DEBUG Processing 484/648 atomic regions from SNP 145046 to 145646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,955 DEBUG Processing 563/1135 atomic regions from SNP 168880 to 169480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,020 DEBUG Processing 674/897 atomic regions from SNP 202100 to 202700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,065 DEBUG Processing 601/1023 atomic regions from SNP 180133 to 180733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,152 DEBUG Processing 170/235 atomic regions from SNP 50927 to 51528 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,185 DEBUG Processing 485/648 atomic regions from SNP 145346 to 145946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,198 DEBUG Processing 700/858 atomic regions from SNP 209856 to 210456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,223 DEBUG Processing 564/1135 atomic regions from SNP 169180 to 169780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,268 DEBUG Processing 675/897 atomic regions from SNP 202400 to 203000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,322 DEBUG Processing 602/1023 atomic regions from SNP 180433 to 181033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,375 DEBUG Processing 171/235 atomic regions from SNP 51228 to 51829 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,418 DEBUG Processing 486/648 atomic regions from SNP 145646 to 146246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,435 DEBUG Processing 701/858 atomic regions from SNP 210156 to 210756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,495 DEBUG Processing 565/1135 atomic regions from SNP 169480 to 170080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,515 DEBUG Processing 676/897 atomic regions from SNP 202700 to 203300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,581 DEBUG Processing 603/1023 atomic regions from SNP 180733 to 181333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,598 DEBUG Processing 172/235 atomic regions from SNP 51529 to 52130 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,648 DEBUG Processing 487/648 atomic regions from SNP 145946 to 146546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,666 DEBUG Processing 702/858 atomic regions from SNP 210456 to 211056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,763 DEBUG Processing 566/1135 atomic regions from SNP 169780 to 170380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,765 DEBUG Processing 677/897 atomic regions from SNP 203000 to 203600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,821 DEBUG Processing 173/235 atomic regions from SNP 51830 to 52431 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,842 DEBUG Processing 604/1023 atomic regions from SNP 181033 to 181633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,877 DEBUG Processing 488/648 atomic regions from SNP 146246 to 146846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,899 DEBUG Processing 703/858 atomic regions from SNP 210756 to 211356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,021 DEBUG Processing 678/897 atomic regions from SNP 203300 to 203900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,028 DEBUG Processing 567/1135 atomic regions from SNP 170080 to 170680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,061 DEBUG Processing 174/235 atomic regions from SNP 52131 to 52732 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,099 DEBUG Processing 605/1023 atomic regions from SNP 181333 to 181933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,116 DEBUG Processing 489/648 atomic regions from SNP 146546 to 147146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,130 DEBUG Processing 704/858 atomic regions from SNP 211056 to 211656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,285 DEBUG Processing 679/897 atomic regions from SNP 203600 to 204200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,290 DEBUG Processing 568/1135 atomic regions from SNP 170380 to 170980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,313 DEBUG Processing 175/235 atomic regions from SNP 52432 to 53033 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,360 DEBUG Processing 606/1023 atomic regions from SNP 181633 to 182233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,364 DEBUG Processing 705/858 atomic regions from SNP 211356 to 211956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,366 DEBUG Processing 490/648 atomic regions from SNP 146846 to 147446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,542 DEBUG Processing 176/235 atomic regions from SNP 52733 to 53334 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,553 DEBUG Processing 569/1135 atomic regions from SNP 170680 to 171280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,562 DEBUG Processing 680/897 atomic regions from SNP 203900 to 204500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,602 DEBUG Processing 706/858 atomic regions from SNP 211656 to 212256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,626 DEBUG Processing 491/648 atomic regions from SNP 147146 to 147746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,629 DEBUG Processing 607/1023 atomic regions from SNP 181933 to 182533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,763 DEBUG Processing 177/235 atomic regions from SNP 53034 to 53635 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,816 DEBUG Processing 570/1135 atomic regions from SNP 170980 to 171580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,832 DEBUG Processing 681/897 atomic regions from SNP 204200 to 204800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,836 DEBUG Processing 707/858 atomic regions from SNP 211956 to 212556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,890 DEBUG Processing 492/648 atomic regions from SNP 147446 to 148046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,893 DEBUG Processing 608/1023 atomic regions from SNP 182233 to 182833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,982 DEBUG Processing 178/235 atomic regions from SNP 53335 to 53936 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,066 DEBUG Processing 708/858 atomic regions from SNP 212256 to 212856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,074 DEBUG Processing 682/897 atomic regions from SNP 204500 to 205100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,081 DEBUG Processing 571/1135 atomic regions from SNP 171280 to 171880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,158 DEBUG Processing 493/648 atomic regions from SNP 147746 to 148346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,161 DEBUG Processing 609/1023 atomic regions from SNP 182533 to 183133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,210 DEBUG Processing 179/235 atomic regions from SNP 53636 to 54237 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,294 DEBUG Processing 709/858 atomic regions from SNP 212556 to 213156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,308 DEBUG Processing 683/897 atomic regions from SNP 204800 to 205400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,342 DEBUG Processing 572/1135 atomic regions from SNP 171580 to 172180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,410 DEBUG Processing 494/648 atomic regions from SNP 148046 to 148646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,419 DEBUG Processing 610/1023 atomic regions from SNP 182833 to 183433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,436 DEBUG Processing 180/235 atomic regions from SNP 53937 to 54538 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,525 DEBUG Processing 710/858 atomic regions from SNP 212856 to 213456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,547 DEBUG Processing 684/897 atomic regions from SNP 205100 to 205700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,603 DEBUG Processing 573/1135 atomic regions from SNP 171880 to 172480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,657 DEBUG Processing 181/235 atomic regions from SNP 54238 to 54839 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,677 DEBUG Processing 611/1023 atomic regions from SNP 183133 to 183733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,677 DEBUG Processing 495/648 atomic regions from SNP 148346 to 148946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,755 DEBUG Processing 711/858 atomic regions from SNP 213156 to 213756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,809 DEBUG Processing 685/897 atomic regions from SNP 205400 to 206000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,866 DEBUG Processing 574/1135 atomic regions from SNP 172180 to 172780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,879 DEBUG Processing 182/235 atomic regions from SNP 54539 to 55140 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,930 DEBUG Processing 496/648 atomic regions from SNP 148646 to 149246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,933 DEBUG Processing 612/1023 atomic regions from SNP 183433 to 184033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,984 DEBUG Processing 712/858 atomic regions from SNP 213456 to 214056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,057 DEBUG Processing 686/897 atomic regions from SNP 205700 to 206300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,101 DEBUG Processing 183/235 atomic regions from SNP 54840 to 55441 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,133 DEBUG Processing 575/1135 atomic regions from SNP 172480 to 173080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,175 DEBUG Processing 497/648 atomic regions from SNP 148946 to 149546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,191 DEBUG Processing 613/1023 atomic regions from SNP 183733 to 184333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,212 DEBUG Processing 713/858 atomic regions from SNP 213756 to 214356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,318 DEBUG Processing 687/897 atomic regions from SNP 206000 to 206600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,349 DEBUG Processing 184/235 atomic regions from SNP 55141 to 55742 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,401 DEBUG Processing 576/1135 atomic regions from SNP 172780 to 173380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,421 DEBUG Processing 498/648 atomic regions from SNP 149246 to 149846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,440 DEBUG Processing 714/858 atomic regions from SNP 214056 to 214656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,447 DEBUG Processing 614/1023 atomic regions from SNP 184033 to 184633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,577 DEBUG Processing 185/235 atomic regions from SNP 55442 to 56043 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,582 DEBUG Processing 688/897 atomic regions from SNP 206300 to 206900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,665 DEBUG Processing 499/648 atomic regions from SNP 149546 to 150146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,673 DEBUG Processing 715/858 atomic regions from SNP 214356 to 214956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,675 DEBUG Processing 577/1135 atomic regions from SNP 173080 to 173680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,705 DEBUG Processing 615/1023 atomic regions from SNP 184333 to 184933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,800 DEBUG Processing 186/235 atomic regions from SNP 55743 to 56344 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,842 DEBUG Processing 689/897 atomic regions from SNP 206600 to 207200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,905 DEBUG Processing 716/858 atomic regions from SNP 214656 to 215256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,913 DEBUG Processing 500/648 atomic regions from SNP 149846 to 150446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,944 DEBUG Processing 578/1135 atomic regions from SNP 173380 to 173980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,966 DEBUG Processing 616/1023 atomic regions from SNP 184633 to 185233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,015 DEBUG Processing 187/235 atomic regions from SNP 56044 to 56645 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,083 DEBUG Processing 690/897 atomic regions from SNP 206900 to 207500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,142 DEBUG Processing 717/858 atomic regions from SNP 214956 to 215556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,160 DEBUG Processing 501/648 atomic regions from SNP 150146 to 150746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,217 DEBUG Processing 579/1135 atomic regions from SNP 173680 to 174280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,232 DEBUG Processing 617/1023 atomic regions from SNP 184933 to 185533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,237 DEBUG Processing 188/235 atomic regions from SNP 56345 to 56946 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,325 DEBUG Processing 691/897 atomic regions from SNP 207200 to 207800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,376 DEBUG Processing 718/858 atomic regions from SNP 215256 to 215856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,408 DEBUG Processing 502/648 atomic regions from SNP 150446 to 151046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,473 DEBUG Processing 189/235 atomic regions from SNP 56646 to 57247 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,496 DEBUG Processing 580/1135 atomic regions from SNP 173980 to 174580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,505 DEBUG Processing 618/1023 atomic regions from SNP 185233 to 185833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,567 DEBUG Processing 692/897 atomic regions from SNP 207500 to 208100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,601 DEBUG Processing 719/858 atomic regions from SNP 215556 to 216156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,636 DEBUG Processing 503/648 atomic regions from SNP 150746 to 151346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,697 DEBUG Processing 190/235 atomic regions from SNP 56947 to 57548 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,761 DEBUG Processing 619/1023 atomic regions from SNP 185533 to 186133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,762 DEBUG Processing 581/1135 atomic regions from SNP 174280 to 174880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,809 DEBUG Processing 693/897 atomic regions from SNP 207800 to 208400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,826 DEBUG Processing 720/858 atomic regions from SNP 215856 to 216456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,859 DEBUG Processing 504/648 atomic regions from SNP 151046 to 151646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,927 DEBUG Processing 191/235 atomic regions from SNP 57248 to 57849 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,017 DEBUG Processing 620/1023 atomic regions from SNP 185833 to 186433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,029 DEBUG Processing 582/1135 atomic regions from SNP 174580 to 175180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,050 DEBUG Processing 694/897 atomic regions from SNP 208100 to 208700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,070 DEBUG Processing 721/858 atomic regions from SNP 216156 to 216756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,083 DEBUG Processing 505/648 atomic regions from SNP 151346 to 151946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,164 DEBUG Processing 192/235 atomic regions from SNP 57549 to 58150 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,272 DEBUG Processing 621/1023 atomic regions from SNP 186133 to 186733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,291 DEBUG Processing 583/1135 atomic regions from SNP 174880 to 175480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,294 DEBUG Processing 695/897 atomic regions from SNP 208400 to 209000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,314 DEBUG Processing 506/648 atomic regions from SNP 151646 to 152246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,319 DEBUG Processing 722/858 atomic regions from SNP 216456 to 217056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,397 DEBUG Processing 193/235 atomic regions from SNP 57850 to 58451 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,527 DEBUG Processing 622/1023 atomic regions from SNP 186433 to 187033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,540 DEBUG Processing 696/897 atomic regions from SNP 208700 to 209300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,554 DEBUG Processing 723/858 atomic regions from SNP 216756 to 217356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,557 DEBUG Processing 584/1135 atomic regions from SNP 175180 to 175780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,561 DEBUG Processing 507/648 atomic regions from SNP 151946 to 152546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,644 DEBUG Processing 194/235 atomic regions from SNP 58151 to 58752 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,782 DEBUG Processing 697/897 atomic regions from SNP 209000 to 209600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,782 DEBUG Processing 623/1023 atomic regions from SNP 186733 to 187333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,791 DEBUG Processing 724/858 atomic regions from SNP 217056 to 217656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,828 DEBUG Processing 508/648 atomic regions from SNP 152246 to 152846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,829 DEBUG Processing 585/1135 atomic regions from SNP 175480 to 176080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,891 DEBUG Processing 195/235 atomic regions from SNP 58452 to 59053 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,025 DEBUG Processing 698/897 atomic regions from SNP 209300 to 209900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,031 DEBUG Processing 725/858 atomic regions from SNP 217356 to 217956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,045 DEBUG Processing 624/1023 atomic regions from SNP 187033 to 187633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,096 DEBUG Processing 509/648 atomic regions from SNP 152546 to 153146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,106 DEBUG Processing 586/1135 atomic regions from SNP 175780 to 176380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,134 DEBUG Processing 196/235 atomic regions from SNP 58753 to 59354 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,265 DEBUG Processing 699/897 atomic regions from SNP 209600 to 210200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,288 DEBUG Processing 726/858 atomic regions from SNP 217656 to 218256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,307 DEBUG Processing 625/1023 atomic regions from SNP 187333 to 187933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,364 DEBUG Processing 510/648 atomic regions from SNP 152846 to 153446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,368 DEBUG Processing 197/235 atomic regions from SNP 59054 to 59655 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,382 DEBUG Processing 587/1135 atomic regions from SNP 176080 to 176680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,502 DEBUG Processing 700/897 atomic regions from SNP 209900 to 210500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,553 DEBUG Processing 727/858 atomic regions from SNP 217956 to 218556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,567 DEBUG Processing 626/1023 atomic regions from SNP 187633 to 188233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,600 DEBUG Processing 198/235 atomic regions from SNP 59355 to 59956 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,630 DEBUG Processing 511/648 atomic regions from SNP 153146 to 153746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,651 DEBUG Processing 588/1135 atomic regions from SNP 176380 to 176980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,739 DEBUG Processing 701/897 atomic regions from SNP 210200 to 210800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,815 DEBUG Processing 728/858 atomic regions from SNP 218256 to 218856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,822 DEBUG Processing 627/1023 atomic regions from SNP 187933 to 188533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,823 DEBUG Processing 199/235 atomic regions from SNP 59656 to 60257 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,893 DEBUG Processing 512/648 atomic regions from SNP 153446 to 154046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,914 DEBUG Processing 589/1135 atomic regions from SNP 176680 to 177280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,984 DEBUG Processing 702/897 atomic regions from SNP 210500 to 211100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,043 DEBUG Processing 200/235 atomic regions from SNP 59957 to 60558 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,073 DEBUG Processing 729/858 atomic regions from SNP 218556 to 219156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,076 DEBUG Processing 628/1023 atomic regions from SNP 188233 to 188833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,151 DEBUG Processing 513/648 atomic regions from SNP 153746 to 154346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,177 DEBUG Processing 590/1135 atomic regions from SNP 176980 to 177580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,231 DEBUG Processing 703/897 atomic regions from SNP 210800 to 211400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,276 DEBUG Processing 201/235 atomic regions from SNP 60258 to 60859 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,303 DEBUG Processing 730/858 atomic regions from SNP 218856 to 219456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,333 DEBUG Processing 629/1023 atomic regions from SNP 188533 to 189133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,398 DEBUG Processing 514/648 atomic regions from SNP 154046 to 154646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,435 DEBUG Processing 591/1135 atomic regions from SNP 177280 to 177880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,475 DEBUG Processing 704/897 atomic regions from SNP 211100 to 211700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,519 DEBUG Processing 202/235 atomic regions from SNP 60559 to 61160 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,531 DEBUG Processing 731/858 atomic regions from SNP 219156 to 219756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,586 DEBUG Processing 630/1023 atomic regions from SNP 188833 to 189433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,649 DEBUG Processing 515/648 atomic regions from SNP 154346 to 154946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,699 DEBUG Processing 592/1135 atomic regions from SNP 177580 to 178180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,719 DEBUG Processing 705/897 atomic regions from SNP 211400 to 212000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,766 DEBUG Processing 732/858 atomic regions from SNP 219456 to 220056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,768 DEBUG Processing 203/235 atomic regions from SNP 60860 to 61461 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,843 DEBUG Processing 631/1023 atomic regions from SNP 189133 to 189733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,907 DEBUG Processing 516/648 atomic regions from SNP 154646 to 155246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,963 DEBUG Processing 706/897 atomic regions from SNP 211700 to 212300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,967 DEBUG Processing 593/1135 atomic regions from SNP 177880 to 178480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,999 DEBUG Processing 733/858 atomic regions from SNP 219756 to 220356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,010 DEBUG Processing 204/235 atomic regions from SNP 61161 to 61762 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,094 DEBUG Processing 632/1023 atomic regions from SNP 189433 to 190033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,160 DEBUG Processing 517/648 atomic regions from SNP 154946 to 155546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,205 DEBUG Processing 707/897 atomic regions from SNP 212000 to 212600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,235 DEBUG Processing 734/858 atomic regions from SNP 220056 to 220656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,236 DEBUG Processing 594/1135 atomic regions from SNP 178180 to 178780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,249 DEBUG Processing 205/235 atomic regions from SNP 61462 to 62063 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,346 DEBUG Processing 633/1023 atomic regions from SNP 189733 to 190333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,424 DEBUG Processing 518/648 atomic regions from SNP 155246 to 155846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,447 DEBUG Processing 708/897 atomic regions from SNP 212300 to 212900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,468 DEBUG Processing 735/858 atomic regions from SNP 220356 to 220956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,475 DEBUG Processing 206/235 atomic regions from SNP 61763 to 62364 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,504 DEBUG Processing 595/1135 atomic regions from SNP 178480 to 179080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,595 DEBUG Processing 634/1023 atomic regions from SNP 190033 to 190633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,682 DEBUG Processing 519/648 atomic regions from SNP 155546 to 156146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,689 DEBUG Processing 709/897 atomic regions from SNP 212600 to 213200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,701 DEBUG Processing 207/235 atomic regions from SNP 62064 to 62665 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,704 DEBUG Processing 736/858 atomic regions from SNP 220656 to 221256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,770 DEBUG Processing 596/1135 atomic regions from SNP 178780 to 179380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,842 DEBUG Processing 635/1023 atomic regions from SNP 190333 to 190933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,922 DEBUG Processing 208/235 atomic regions from SNP 62365 to 62966 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,932 DEBUG Processing 737/858 atomic regions from SNP 220956 to 221556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,943 DEBUG Processing 520/648 atomic regions from SNP 155846 to 156446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,947 DEBUG Processing 710/897 atomic regions from SNP 212900 to 213500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,028 DEBUG Processing 597/1135 atomic regions from SNP 179080 to 179680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,091 DEBUG Processing 636/1023 atomic regions from SNP 190633 to 191233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,143 DEBUG Processing 209/235 atomic regions from SNP 62666 to 63267 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,160 DEBUG Processing 738/858 atomic regions from SNP 221256 to 221856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,203 DEBUG Processing 521/648 atomic regions from SNP 156146 to 156746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,216 DEBUG Processing 711/897 atomic regions from SNP 213200 to 213800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,286 DEBUG Processing 598/1135 atomic regions from SNP 179380 to 179980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,343 DEBUG Processing 637/1023 atomic regions from SNP 190933 to 191533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,364 DEBUG Processing 210/235 atomic regions from SNP 62967 to 63568 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,390 DEBUG Processing 739/858 atomic regions from SNP 221556 to 222156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,446 DEBUG Processing 522/648 atomic regions from SNP 156446 to 157046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,493 DEBUG Processing 712/897 atomic regions from SNP 213500 to 214100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,543 DEBUG Processing 599/1135 atomic regions from SNP 179680 to 180280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,581 DEBUG Processing 211/235 atomic regions from SNP 63268 to 63869 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,596 DEBUG Processing 638/1023 atomic regions from SNP 191233 to 191833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,617 DEBUG Processing 740/858 atomic regions from SNP 221856 to 222456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,701 DEBUG Processing 523/648 atomic regions from SNP 156746 to 157346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,753 DEBUG Processing 713/897 atomic regions from SNP 213800 to 214400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,800 DEBUG Processing 212/235 atomic regions from SNP 63569 to 64170 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,804 DEBUG Processing 600/1135 atomic regions from SNP 179980 to 180580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,843 DEBUG Processing 741/858 atomic regions from SNP 222156 to 222756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,849 DEBUG Processing 639/1023 atomic regions from SNP 191533 to 192133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,955 DEBUG Processing 524/648 atomic regions from SNP 157046 to 157646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,018 DEBUG Processing 213/235 atomic regions from SNP 63870 to 64471 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,020 DEBUG Processing 714/897 atomic regions from SNP 214100 to 214700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,063 DEBUG Processing 601/1135 atomic regions from SNP 180280 to 180880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,071 DEBUG Processing 742/858 atomic regions from SNP 222456 to 223056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,103 DEBUG Processing 640/1023 atomic regions from SNP 191833 to 192433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,216 DEBUG Processing 525/648 atomic regions from SNP 157346 to 157946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,263 DEBUG Processing 214/235 atomic regions from SNP 64171 to 64772 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,281 DEBUG Processing 715/897 atomic regions from SNP 214400 to 215000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,304 DEBUG Processing 743/858 atomic regions from SNP 222756 to 223356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,337 DEBUG Processing 602/1135 atomic regions from SNP 180580 to 181180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,363 DEBUG Processing 641/1023 atomic regions from SNP 192133 to 192733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,476 DEBUG Processing 526/648 atomic regions from SNP 157646 to 158246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,513 DEBUG Processing 215/235 atomic regions from SNP 64472 to 65073 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,529 DEBUG Processing 716/897 atomic regions from SNP 214700 to 215300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,538 DEBUG Processing 744/858 atomic regions from SNP 223056 to 223656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,625 DEBUG Processing 603/1135 atomic regions from SNP 180880 to 181480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,642 DEBUG Processing 642/1023 atomic regions from SNP 192433 to 193033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,738 DEBUG Processing 527/648 atomic regions from SNP 157946 to 158546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,757 DEBUG Processing 216/235 atomic regions from SNP 64773 to 65374 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,773 DEBUG Processing 745/858 atomic regions from SNP 223356 to 223956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,781 DEBUG Processing 717/897 atomic regions from SNP 215000 to 215600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,900 DEBUG Processing 604/1135 atomic regions from SNP 181180 to 181780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,909 DEBUG Processing 643/1023 atomic regions from SNP 192733 to 193333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,991 DEBUG Processing 217/235 atomic regions from SNP 65074 to 65675 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,003 DEBUG Processing 528/648 atomic regions from SNP 158246 to 158846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,006 DEBUG Processing 746/858 atomic regions from SNP 223656 to 224256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,034 DEBUG Processing 718/897 atomic regions from SNP 215300 to 215900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,154 DEBUG Processing 605/1135 atomic regions from SNP 181480 to 182080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,164 DEBUG Processing 644/1023 atomic regions from SNP 193033 to 193633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,225 DEBUG Processing 218/235 atomic regions from SNP 65375 to 65976 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,241 DEBUG Processing 747/858 atomic regions from SNP 223956 to 224556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,255 DEBUG Processing 529/648 atomic regions from SNP 158546 to 159146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,286 DEBUG Processing 719/897 atomic regions from SNP 215600 to 216200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,416 DEBUG Processing 606/1135 atomic regions from SNP 181780 to 182380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,419 DEBUG Processing 645/1023 atomic regions from SNP 193333 to 193933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,451 DEBUG Processing 219/235 atomic regions from SNP 65676 to 66277 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,477 DEBUG Processing 748/858 atomic regions from SNP 224256 to 224856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,518 DEBUG Processing 530/648 atomic regions from SNP 158846 to 159446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,539 DEBUG Processing 720/897 atomic regions from SNP 215900 to 216500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,676 DEBUG Processing 646/1023 atomic regions from SNP 193633 to 194233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,676 DEBUG Processing 220/235 atomic regions from SNP 65977 to 66578 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,695 DEBUG Processing 607/1135 atomic regions from SNP 182080 to 182680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,710 DEBUG Processing 749/858 atomic regions from SNP 224556 to 225156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,785 DEBUG Processing 531/648 atomic regions from SNP 159146 to 159746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,787 DEBUG Processing 721/897 atomic regions from SNP 216200 to 216800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,901 DEBUG Processing 221/235 atomic regions from SNP 66278 to 66879 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,935 DEBUG Processing 647/1023 atomic regions from SNP 193933 to 194533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,944 DEBUG Processing 750/858 atomic regions from SNP 224856 to 225456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,974 DEBUG Processing 608/1135 atomic regions from SNP 182380 to 182980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,032 DEBUG Processing 722/897 atomic regions from SNP 216500 to 217100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,046 DEBUG Processing 532/648 atomic regions from SNP 159446 to 160046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,116 DEBUG Processing 222/235 atomic regions from SNP 66579 to 67180 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,172 DEBUG Processing 751/858 atomic regions from SNP 225156 to 225756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,192 DEBUG Processing 648/1023 atomic regions from SNP 194233 to 194833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,241 DEBUG Processing 609/1135 atomic regions from SNP 182680 to 183280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,278 DEBUG Processing 723/897 atomic regions from SNP 216800 to 217400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,294 DEBUG Processing 533/648 atomic regions from SNP 159746 to 160346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,337 DEBUG Processing 223/235 atomic regions from SNP 66880 to 67481 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,401 DEBUG Processing 752/858 atomic regions from SNP 225456 to 226056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,449 DEBUG Processing 649/1023 atomic regions from SNP 194533 to 195133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,504 DEBUG Processing 610/1135 atomic regions from SNP 182980 to 183580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,541 DEBUG Processing 724/897 atomic regions from SNP 217100 to 217700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,552 DEBUG Processing 534/648 atomic regions from SNP 160046 to 160646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,552 DEBUG Processing 224/235 atomic regions from SNP 67181 to 67782 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,654 DEBUG Processing 753/858 atomic regions from SNP 225756 to 226356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,705 DEBUG Processing 650/1023 atomic regions from SNP 194833 to 195433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,769 DEBUG Processing 611/1135 atomic regions from SNP 183280 to 183880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,771 DEBUG Processing 225/235 atomic regions from SNP 67482 to 68083 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,807 DEBUG Processing 535/648 atomic regions from SNP 160346 to 160946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,815 DEBUG Processing 725/897 atomic regions from SNP 217400 to 218000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,905 DEBUG Processing 754/858 atomic regions from SNP 226056 to 226656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,956 DEBUG Processing 651/1023 atomic regions from SNP 195133 to 195733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,992 DEBUG Processing 226/235 atomic regions from SNP 67783 to 68384 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,030 DEBUG Processing 612/1135 atomic regions from SNP 183580 to 184180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,066 DEBUG Processing 536/648 atomic regions from SNP 160646 to 161246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,089 DEBUG Processing 726/897 atomic regions from SNP 217700 to 218300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,137 DEBUG Processing 755/858 atomic regions from SNP 226356 to 226956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,206 DEBUG Processing 652/1023 atomic regions from SNP 195433 to 196033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,213 DEBUG Processing 227/235 atomic regions from SNP 68084 to 68685 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,288 DEBUG Processing 613/1135 atomic regions from SNP 183880 to 184480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,318 DEBUG Processing 537/648 atomic regions from SNP 160946 to 161546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,352 DEBUG Processing 727/897 atomic regions from SNP 218000 to 218600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,379 DEBUG Processing 756/858 atomic regions from SNP 226656 to 227256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,431 DEBUG Processing 228/235 atomic regions from SNP 68385 to 68986 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,460 DEBUG Processing 653/1023 atomic regions from SNP 195733 to 196333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,548 DEBUG Processing 538/648 atomic regions from SNP 161246 to 161846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,550 DEBUG Processing 614/1135 atomic regions from SNP 184180 to 184780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,597 DEBUG Processing 728/897 atomic regions from SNP 218300 to 218900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,616 DEBUG Processing 757/858 atomic regions from SNP 226956 to 227556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,655 DEBUG Processing 229/235 atomic regions from SNP 68686 to 69287 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,716 DEBUG Processing 654/1023 atomic regions from SNP 196033 to 196633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,777 DEBUG Processing 539/648 atomic regions from SNP 161546 to 162146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,805 DEBUG Processing 615/1135 atomic regions from SNP 184480 to 185080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,837 DEBUG Processing 729/897 atomic regions from SNP 218600 to 219200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,874 DEBUG Processing 230/235 atomic regions from SNP 68987 to 69588 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,879 DEBUG Processing 758/858 atomic regions from SNP 227256 to 227856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,963 DEBUG Processing 655/1023 atomic regions from SNP 196333 to 196933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,009 DEBUG Processing 540/648 atomic regions from SNP 161846 to 162446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,063 DEBUG Processing 616/1135 atomic regions from SNP 184780 to 185380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,083 DEBUG Processing 730/897 atomic regions from SNP 218900 to 219500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,099 DEBUG Processing 231/235 atomic regions from SNP 69288 to 69889 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:28,146 DEBUG Processing 759/858 atomic regions from SNP 227556 to 228156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,210 DEBUG Processing 656/1023 atomic regions from SNP 196633 to 197233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,248 DEBUG Processing 541/648 atomic regions from SNP 162146 to 162746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,325 DEBUG Processing 232/235 atomic regions from SNP 69589 to 70190 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:28,328 DEBUG Processing 617/1135 atomic regions from SNP 185080 to 185680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,333 DEBUG Processing 731/897 atomic regions from SNP 219200 to 219800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,405 DEBUG Processing 760/858 atomic regions from SNP 227856 to 228456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,464 DEBUG Processing 657/1023 atomic regions from SNP 196933 to 197533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,488 DEBUG Processing 542/648 atomic regions from SNP 162446 to 163046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,564 DEBUG Processing 233/235 atomic regions from SNP 69890 to 70491 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:28,611 DEBUG Processing 618/1135 atomic regions from SNP 185380 to 185980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,616 DEBUG Processing 732/897 atomic regions from SNP 219500 to 220100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,655 DEBUG Processing 761/858 atomic regions from SNP 228156 to 228756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,716 DEBUG Processing 658/1023 atomic regions from SNP 197233 to 197833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,728 DEBUG Processing 543/648 atomic regions from SNP 162746 to 163346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,786 DEBUG Processing 234/235 atomic regions from SNP 70191 to 70792 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:28,862 DEBUG Processing 733/897 atomic regions from SNP 219800 to 220400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,872 DEBUG Processing 619/1135 atomic regions from SNP 185680 to 186280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,884 DEBUG Processing 762/858 atomic regions from SNP 228456 to 229056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,968 DEBUG Processing 659/1023 atomic regions from SNP 197533 to 198133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,975 DEBUG Processing 544/648 atomic regions from SNP 163046 to 163646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,014 DEBUG Processing 235/235 atomic regions from SNP 70492 to 71093 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:29,140 DEBUG Processing 734/897 atomic regions from SNP 220100 to 220700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,167 DEBUG Processing 620/1135 atomic regions from SNP 185980 to 186580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,171 DEBUG Processing 763/858 atomic regions from SNP 228756 to 229356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,191 DEBUG Unique SNPs positions in subchromosome 6: 71094 2025-01-31 09:46:29,273 DEBUG Processing 660/1023 atomic regions from SNP 197833 to 198433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,284 DEBUG Processing 545/648 atomic regions from SNP 163346 to 163946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,319 DEBUG Subchromosome time: 62.040221872041, subchromosome SNPs: 71094 2025-01-31 09:46:29,319 DEBUG Estimated BADs: [1.36, 4.08, 1.36, 4.08, 0.68, 1.36, 0.68, 0.00, 0.00, 2.72, 0.68, 1.36, 13.59, 1.36, 4.08, 0.68, 13.59, 1.36, 4.08, 1.36, 2.72, 0.68, 0.00, 0.68, 2.72, 1.36, 2.72, 1.36, 2.72, 1.36, 13.59] SNP counts: [3946, 3371, 3687, 4181, 3314, 9046, 5335, 1, 55, 5486, 15532, 3886, 156, 35454, 3987, 26418, 106, 3097, 1563, 10789, 8156, 27996, 4, 13292, 1101, 22904, 2964, 11733, 9151, 9909, 40] SNP IDs counts: [3946, 3371, 3687, 4181, 3314, 9046, 5335, 1, 55, 5486, 15532, 3886, 156, 35454, 3987, 26418, 106, 3097, 1563, 10789, 8156, 27996, 4, 13292, 1101, 22904, 2964, 11733, 9151, 9909, 40] Critical gap: 750779bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.56Mbp, 9.74Mbp, 11.80Mbp, 14.08Mbp, 16.09Mbp, 21.51Mbp, 26.92Mbp[1.11Mbp], 28.03Mbp[1.54Mbp], 30.07Mbp[1.07Mbp], 38.87Mbp, 48.21Mbp, 50.55Mbp, 50.64Mbp, 73.23Mbp, 75.78Mbp, 92.02Mbp, 92.08Mbp, 93.90Mbp, 94.85Mbp, 101.25Mbp, 105.99Mbp, 124.24Mbp[0.88Mbp], 125.13Mbp[0.88Mbp], 134.05Mbp, 134.63Mbp, 150.43Mbp, 152.14Mbp, 159.25Mbp, 164.35Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:46:29,319 DEBUG chrX time: 62.040927855996415 s 2025-01-31 09:46:29,412 DEBUG Processing 735/897 atomic regions from SNP 220400 to 221000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,445 DEBUG Processing 764/858 atomic regions from SNP 229056 to 229656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,446 DEBUG Processing 621/1135 atomic regions from SNP 186280 to 186880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,470 DEBUG chrX: Fitting background model for 28 segments 2025-01-31 09:46:29,529 DEBUG Processing 661/1023 atomic regions from SNP 198133 to 198733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,536 DEBUG Processing 546/648 atomic regions from SNP 163646 to 164246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,666 DEBUG Processing 736/897 atomic regions from SNP 220700 to 221300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,703 DEBUG Processing 765/858 atomic regions from SNP 229356 to 229956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,706 DEBUG Processing 622/1135 atomic regions from SNP 186580 to 187180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,782 DEBUG Processing 662/1023 atomic regions from SNP 198433 to 199033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,788 DEBUG Processing 547/648 atomic regions from SNP 163946 to 164546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,929 DEBUG Processing 737/897 atomic regions from SNP 221000 to 221600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,949 DEBUG Processing 766/858 atomic regions from SNP 229656 to 230256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,967 DEBUG Processing 623/1135 atomic regions from SNP 186880 to 187480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,028 DEBUG Processing 548/648 atomic regions from SNP 164246 to 164846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,041 DEBUG Processing 663/1023 atomic regions from SNP 198733 to 199333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,176 DEBUG Processing 738/897 atomic regions from SNP 221300 to 221900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,180 DEBUG Processing 767/858 atomic regions from SNP 229956 to 230556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,233 DEBUG Processing 624/1135 atomic regions from SNP 187180 to 187780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,284 DEBUG Processing 549/648 atomic regions from SNP 164546 to 165146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,297 DEBUG Processing 664/1023 atomic regions from SNP 199033 to 199633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,417 DEBUG Processing 768/858 atomic regions from SNP 230256 to 230856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,423 DEBUG Processing 739/897 atomic regions from SNP 221600 to 222200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,510 DEBUG Processing 625/1135 atomic regions from SNP 187480 to 188080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,546 DEBUG Processing 550/648 atomic regions from SNP 164846 to 165446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,560 DEBUG Processing 665/1023 atomic regions from SNP 199333 to 199933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,656 DEBUG Processing 769/858 atomic regions from SNP 230556 to 231156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,670 DEBUG Processing 740/897 atomic regions from SNP 221900 to 222500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,781 DEBUG Processing 551/648 atomic regions from SNP 165146 to 165746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,781 DEBUG Processing 626/1135 atomic regions from SNP 187780 to 188380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,822 DEBUG Processing 666/1023 atomic regions from SNP 199633 to 200233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,905 DEBUG Processing 770/858 atomic regions from SNP 230856 to 231456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,916 DEBUG Processing 741/897 atomic regions from SNP 222200 to 222800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,012 DEBUG Processing 552/648 atomic regions from SNP 165446 to 166046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,051 DEBUG Processing 627/1135 atomic regions from SNP 188080 to 188680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,104 DEBUG Processing 667/1023 atomic regions from SNP 199933 to 200533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,176 DEBUG Processing 742/897 atomic regions from SNP 222500 to 223100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,179 DEBUG Processing 771/858 atomic regions from SNP 231156 to 231756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,254 DEBUG Processing 553/648 atomic regions from SNP 165746 to 166346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,318 DEBUG Processing 628/1135 atomic regions from SNP 188380 to 188980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,371 DEBUG Processing 668/1023 atomic regions from SNP 200233 to 200833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,422 DEBUG Processing 743/897 atomic regions from SNP 222800 to 223400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,446 DEBUG Processing 772/858 atomic regions from SNP 231456 to 232056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,497 DEBUG Processing 554/648 atomic regions from SNP 166046 to 166646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,580 DEBUG Processing 629/1135 atomic regions from SNP 188680 to 189280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,630 DEBUG Processing 669/1023 atomic regions from SNP 200533 to 201133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,660 DEBUG Processing 744/897 atomic regions from SNP 223100 to 223700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,705 DEBUG Processing 773/858 atomic regions from SNP 231756 to 232356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,749 DEBUG Processing 555/648 atomic regions from SNP 166346 to 166946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,838 DEBUG Processing 630/1135 atomic regions from SNP 188980 to 189580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,884 DEBUG Processing 670/1023 atomic regions from SNP 200833 to 201433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,897 DEBUG Processing 745/897 atomic regions from SNP 223400 to 224000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,969 DEBUG Processing 774/858 atomic regions from SNP 232056 to 232656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,996 DEBUG Processing 556/648 atomic regions from SNP 166646 to 167246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,100 DEBUG Processing 631/1135 atomic regions from SNP 189280 to 189880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,145 DEBUG Processing 746/897 atomic regions from SNP 223700 to 224300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,145 DEBUG Processing 671/1023 atomic regions from SNP 201133 to 201733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,239 DEBUG Processing 775/858 atomic regions from SNP 232356 to 232956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,240 DEBUG Processing 557/648 atomic regions from SNP 166946 to 167546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,368 DEBUG Processing 632/1135 atomic regions from SNP 189580 to 190180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,397 DEBUG Processing 747/897 atomic regions from SNP 224000 to 224600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,413 DEBUG Processing 672/1023 atomic regions from SNP 201433 to 202033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,492 DEBUG Processing 558/648 atomic regions from SNP 167246 to 167846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,497 DEBUG Processing 776/858 atomic regions from SNP 232656 to 233256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,630 DEBUG Processing 633/1135 atomic regions from SNP 189880 to 190480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,652 DEBUG Processing 748/897 atomic regions from SNP 224300 to 224900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,677 DEBUG Processing 673/1023 atomic regions from SNP 201733 to 202333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,741 DEBUG Processing 559/648 atomic regions from SNP 167546 to 168146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,754 DEBUG Processing 777/858 atomic regions from SNP 232956 to 233556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,889 DEBUG Processing 634/1135 atomic regions from SNP 190180 to 190780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,903 DEBUG Processing 749/897 atomic regions from SNP 224600 to 225200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,938 DEBUG Processing 674/1023 atomic regions from SNP 202033 to 202633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,971 DEBUG Processing 560/648 atomic regions from SNP 167846 to 168446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,011 DEBUG Processing 778/858 atomic regions from SNP 233256 to 233856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,150 DEBUG Processing 635/1135 atomic regions from SNP 190480 to 191080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,151 DEBUG Processing 750/897 atomic regions from SNP 224900 to 225500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,200 DEBUG Processing 675/1023 atomic regions from SNP 202333 to 202933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,203 DEBUG Processing 561/648 atomic regions from SNP 168146 to 168746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,238 DEBUG Processing 779/858 atomic regions from SNP 233556 to 234156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,401 DEBUG Processing 751/897 atomic regions from SNP 225200 to 225800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,420 DEBUG Processing 636/1135 atomic regions from SNP 190780 to 191380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,440 DEBUG Processing 562/648 atomic regions from SNP 168446 to 169046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,467 DEBUG Processing 676/1023 atomic regions from SNP 202633 to 203233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,473 DEBUG Processing 780/858 atomic regions from SNP 233856 to 234456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,645 DEBUG Processing 752/897 atomic regions from SNP 225500 to 226100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,673 DEBUG Processing 563/648 atomic regions from SNP 168746 to 169346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,685 DEBUG Processing 637/1135 atomic regions from SNP 191080 to 191680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,705 DEBUG Processing 781/858 atomic regions from SNP 234156 to 234756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,729 DEBUG Processing 677/1023 atomic regions from SNP 202933 to 203533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,890 DEBUG Processing 753/897 atomic regions from SNP 225800 to 226400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,925 DEBUG Processing 564/648 atomic regions from SNP 169046 to 169646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,940 DEBUG Processing 782/858 atomic regions from SNP 234456 to 235056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,952 DEBUG Processing 638/1135 atomic regions from SNP 191380 to 191980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,990 DEBUG Processing 678/1023 atomic regions from SNP 203233 to 203833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,133 DEBUG Processing 754/897 atomic regions from SNP 226100 to 226700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,186 DEBUG Processing 783/858 atomic regions from SNP 234756 to 235356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,188 DEBUG Processing 565/648 atomic regions from SNP 169346 to 169946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,214 DEBUG Processing 639/1135 atomic regions from SNP 191680 to 192280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,247 DEBUG Processing 679/1023 atomic regions from SNP 203533 to 204133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,373 DEBUG Processing 755/897 atomic regions from SNP 226400 to 227000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,446 DEBUG Processing 566/648 atomic regions from SNP 169646 to 170246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,451 DEBUG Processing 784/858 atomic regions from SNP 235056 to 235656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,481 DEBUG Processing 640/1135 atomic regions from SNP 191980 to 192580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,527 DEBUG Processing 680/1023 atomic regions from SNP 203833 to 204433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,615 DEBUG Processing 756/897 atomic regions from SNP 226700 to 227300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,716 DEBUG Processing 567/648 atomic regions from SNP 169946 to 170546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,719 DEBUG Processing 785/858 atomic regions from SNP 235356 to 235956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,756 DEBUG Processing 641/1135 atomic regions from SNP 192280 to 192880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,824 DEBUG Processing 681/1023 atomic regions from SNP 204133 to 204733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,856 DEBUG Processing 757/897 atomic regions from SNP 227000 to 227600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,973 DEBUG Processing 786/858 atomic regions from SNP 235656 to 236256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,974 DEBUG Processing 568/648 atomic regions from SNP 170246 to 170846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,027 DEBUG Processing 642/1135 atomic regions from SNP 192580 to 193180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,111 DEBUG Processing 758/897 atomic regions from SNP 227300 to 227900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,119 DEBUG Processing 682/1023 atomic regions from SNP 204433 to 205033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,227 DEBUG Processing 569/648 atomic regions from SNP 170546 to 171146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,240 DEBUG Processing 787/858 atomic regions from SNP 235956 to 236556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,294 DEBUG Processing 643/1135 atomic regions from SNP 192880 to 193480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,381 DEBUG Processing 759/897 atomic regions from SNP 227600 to 228200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,412 DEBUG Processing 683/1023 atomic regions from SNP 204733 to 205333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,488 DEBUG Processing 570/648 atomic regions from SNP 170846 to 171446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,494 DEBUG Processing 788/858 atomic regions from SNP 236256 to 236856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,555 DEBUG Processing 644/1135 atomic regions from SNP 193180 to 193780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,648 DEBUG Processing 760/897 atomic regions from SNP 227900 to 228500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,694 DEBUG Processing 684/1023 atomic regions from SNP 205033 to 205633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,747 DEBUG Processing 571/648 atomic regions from SNP 171146 to 171746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,750 DEBUG Processing 789/858 atomic regions from SNP 236556 to 237156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,822 DEBUG Processing 645/1135 atomic regions from SNP 193480 to 194080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,900 DEBUG Processing 761/897 atomic regions from SNP 228200 to 228800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,983 DEBUG Processing 685/1023 atomic regions from SNP 205333 to 205933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,003 DEBUG Processing 790/858 atomic regions from SNP 236856 to 237456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,007 DEBUG Processing 572/648 atomic regions from SNP 171446 to 172046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,083 DEBUG Processing 646/1135 atomic regions from SNP 193780 to 194380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,167 DEBUG Processing 762/897 atomic regions from SNP 228500 to 229100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,236 DEBUG Processing 573/648 atomic regions from SNP 171746 to 172346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,257 DEBUG Processing 686/1023 atomic regions from SNP 205633 to 206233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,266 DEBUG Processing 791/858 atomic regions from SNP 237156 to 237756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,335 DEBUG Processing 647/1135 atomic regions from SNP 194080 to 194680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,414 DEBUG Processing 763/897 atomic regions from SNP 228800 to 229400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,469 DEBUG Processing 574/648 atomic regions from SNP 172046 to 172646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,536 DEBUG Processing 792/858 atomic regions from SNP 237456 to 238056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,542 DEBUG Processing 687/1023 atomic regions from SNP 205933 to 206533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,592 DEBUG Processing 648/1135 atomic regions from SNP 194380 to 194980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,661 DEBUG Processing 764/897 atomic regions from SNP 229100 to 229700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,698 DEBUG Processing 575/648 atomic regions from SNP 172346 to 172946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,804 DEBUG Processing 793/858 atomic regions from SNP 237756 to 238356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,817 DEBUG Processing 688/1023 atomic regions from SNP 206233 to 206833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,855 DEBUG Processing 649/1135 atomic regions from SNP 194680 to 195280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,906 DEBUG Processing 765/897 atomic regions from SNP 229400 to 230000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,925 DEBUG Processing 576/648 atomic regions from SNP 172646 to 173246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,049 DEBUG Processing 794/858 atomic regions from SNP 238056 to 238656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,088 DEBUG Processing 689/1023 atomic regions from SNP 206533 to 207133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,120 DEBUG Processing 650/1135 atomic regions from SNP 194980 to 195580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,151 DEBUG Processing 766/897 atomic regions from SNP 229700 to 230300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,151 DEBUG Processing 577/648 atomic regions from SNP 172946 to 173546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,281 DEBUG Processing 795/858 atomic regions from SNP 238356 to 238956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,378 DEBUG Processing 690/1023 atomic regions from SNP 206833 to 207433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,383 DEBUG Processing 578/648 atomic regions from SNP 173246 to 173846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,390 DEBUG Processing 651/1135 atomic regions from SNP 195280 to 195880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,424 DEBUG Processing 767/897 atomic regions from SNP 230000 to 230600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,511 DEBUG Processing 796/858 atomic regions from SNP 238656 to 239256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,625 DEBUG Processing 579/648 atomic regions from SNP 173546 to 174146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,659 DEBUG Processing 691/1023 atomic regions from SNP 207133 to 207733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,668 DEBUG Processing 652/1135 atomic regions from SNP 195580 to 196180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,675 DEBUG Processing 768/897 atomic regions from SNP 230300 to 230900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,755 DEBUG Processing 797/858 atomic regions from SNP 238956 to 239556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,868 DEBUG Processing 580/648 atomic regions from SNP 173846 to 174446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,926 DEBUG Processing 769/897 atomic regions from SNP 230600 to 231200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,938 DEBUG Processing 692/1023 atomic regions from SNP 207433 to 208033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,941 DEBUG Processing 653/1135 atomic regions from SNP 195880 to 196480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,999 DEBUG Processing 798/858 atomic regions from SNP 239256 to 239856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,111 DEBUG Processing 581/648 atomic regions from SNP 174146 to 174746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,185 DEBUG Processing 770/897 atomic regions from SNP 230900 to 231500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,213 DEBUG Processing 654/1135 atomic regions from SNP 196180 to 196780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,225 DEBUG Processing 799/858 atomic regions from SNP 239556 to 240156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,229 DEBUG Processing 693/1023 atomic regions from SNP 207733 to 208333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,341 DEBUG Processing 582/648 atomic regions from SNP 174446 to 175046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,444 DEBUG Processing 771/897 atomic regions from SNP 231200 to 231800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,457 DEBUG Processing 800/858 atomic regions from SNP 239856 to 240456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,482 DEBUG Processing 655/1135 atomic regions from SNP 196480 to 197080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,497 DEBUG Processing 694/1023 atomic regions from SNP 208033 to 208633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,572 DEBUG Processing 583/648 atomic regions from SNP 174746 to 175346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,700 DEBUG Processing 801/858 atomic regions from SNP 240156 to 240756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,702 DEBUG Processing 772/897 atomic regions from SNP 231500 to 232100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,756 DEBUG Processing 656/1135 atomic regions from SNP 196780 to 197380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,769 DEBUG Processing 695/1023 atomic regions from SNP 208333 to 208933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,800 DEBUG Processing 584/648 atomic regions from SNP 175046 to 175646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,932 DEBUG Processing 802/858 atomic regions from SNP 240456 to 241056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,958 DEBUG Processing 773/897 atomic regions from SNP 231800 to 232400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,024 DEBUG Processing 657/1135 atomic regions from SNP 197080 to 197680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,033 DEBUG Processing 585/648 atomic regions from SNP 175346 to 175946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,057 DEBUG Processing 696/1023 atomic regions from SNP 208633 to 209233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,173 DEBUG Processing 803/858 atomic regions from SNP 240756 to 241356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,213 DEBUG Processing 774/897 atomic regions from SNP 232100 to 232700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,272 DEBUG Processing 586/648 atomic regions from SNP 175646 to 176246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,299 DEBUG Processing 658/1135 atomic regions from SNP 197380 to 197980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,341 DEBUG Processing 697/1023 atomic regions from SNP 208933 to 209533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,442 DEBUG Processing 804/858 atomic regions from SNP 241056 to 241656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,462 DEBUG Processing 775/897 atomic regions from SNP 232400 to 233000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,509 DEBUG Processing 587/648 atomic regions from SNP 175946 to 176546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,574 DEBUG Processing 659/1135 atomic regions from SNP 197680 to 198280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,636 DEBUG Processing 698/1023 atomic regions from SNP 209233 to 209833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,707 DEBUG Processing 805/858 atomic regions from SNP 241356 to 241956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,708 DEBUG Processing 776/897 atomic regions from SNP 232700 to 233300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,743 DEBUG Processing 588/648 atomic regions from SNP 176246 to 176846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,847 DEBUG Processing 660/1135 atomic regions from SNP 197980 to 198580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,923 DEBUG Processing 699/1023 atomic regions from SNP 209533 to 210133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,954 DEBUG Processing 777/897 atomic regions from SNP 233000 to 233600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,974 DEBUG Processing 806/858 atomic regions from SNP 241656 to 242256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,994 DEBUG Processing 589/648 atomic regions from SNP 176546 to 177146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,114 DEBUG Processing 661/1135 atomic regions from SNP 198280 to 198880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,191 DEBUG Processing 700/1023 atomic regions from SNP 209833 to 210433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,208 DEBUG Processing 778/897 atomic regions from SNP 233300 to 233900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,264 DEBUG Processing 807/858 atomic regions from SNP 241956 to 242556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,265 DEBUG Processing 590/648 atomic regions from SNP 176846 to 177446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,399 DEBUG Processing 662/1135 atomic regions from SNP 198580 to 199180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,472 DEBUG Processing 701/1023 atomic regions from SNP 210133 to 210733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,476 DEBUG Processing 779/897 atomic regions from SNP 233600 to 234200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,560 DEBUG Processing 808/858 atomic regions from SNP 242256 to 242856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,563 DEBUG Processing 591/648 atomic regions from SNP 177146 to 177746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,713 DEBUG Processing 663/1135 atomic regions from SNP 198880 to 199480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,759 DEBUG Processing 780/897 atomic regions from SNP 233900 to 234500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,773 DEBUG Processing 702/1023 atomic regions from SNP 210433 to 211033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,843 DEBUG Processing 592/648 atomic regions from SNP 177446 to 178046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,863 DEBUG Processing 809/858 atomic regions from SNP 242556 to 243156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,983 DEBUG Processing 664/1135 atomic regions from SNP 199180 to 199780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,017 DEBUG Processing 781/897 atomic regions from SNP 234200 to 234800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,059 DEBUG Processing 703/1023 atomic regions from SNP 210733 to 211333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,080 DEBUG Processing 593/648 atomic regions from SNP 177746 to 178346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,136 DEBUG Processing 810/858 atomic regions from SNP 242856 to 243456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,254 DEBUG Processing 665/1135 atomic regions from SNP 199480 to 200080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,268 DEBUG Processing 782/897 atomic regions from SNP 234500 to 235100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,312 DEBUG Processing 594/648 atomic regions from SNP 178046 to 178646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,350 DEBUG Processing 704/1023 atomic regions from SNP 211033 to 211633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,405 DEBUG Processing 811/858 atomic regions from SNP 243156 to 243756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,519 DEBUG Processing 783/897 atomic regions from SNP 234800 to 235400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,524 DEBUG Processing 666/1135 atomic regions from SNP 199780 to 200380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,552 DEBUG Processing 595/648 atomic regions from SNP 178346 to 178946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,629 DEBUG Processing 705/1023 atomic regions from SNP 211333 to 211933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,677 DEBUG Processing 812/858 atomic regions from SNP 243456 to 244056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,765 DEBUG Processing 784/897 atomic regions from SNP 235100 to 235700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,786 DEBUG Processing 596/648 atomic regions from SNP 178646 to 179246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,793 DEBUG Processing 667/1135 atomic regions from SNP 200080 to 200680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,894 DEBUG Processing 706/1023 atomic regions from SNP 211633 to 212233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,940 DEBUG Processing 813/858 atomic regions from SNP 243756 to 244356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,017 DEBUG Processing 785/897 atomic regions from SNP 235400 to 236000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,045 DEBUG Processing 597/648 atomic regions from SNP 178946 to 179546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,066 DEBUG Processing 668/1135 atomic regions from SNP 200380 to 200980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,152 DEBUG Processing 707/1023 atomic regions from SNP 211933 to 212533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,196 DEBUG Processing 814/858 atomic regions from SNP 244056 to 244656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,270 DEBUG Processing 786/897 atomic regions from SNP 235700 to 236300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,316 DEBUG Processing 598/648 atomic regions from SNP 179246 to 179846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,337 DEBUG Processing 669/1135 atomic regions from SNP 200680 to 201280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,410 DEBUG Processing 708/1023 atomic regions from SNP 212233 to 212833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,461 DEBUG Processing 815/858 atomic regions from SNP 244356 to 244956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,528 DEBUG Processing 787/897 atomic regions from SNP 236000 to 236600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,567 DEBUG Processing 599/648 atomic regions from SNP 179546 to 180146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,602 DEBUG Processing 670/1135 atomic regions from SNP 200980 to 201580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,671 DEBUG Processing 709/1023 atomic regions from SNP 212533 to 213133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,707 DEBUG Processing 816/858 atomic regions from SNP 244656 to 245256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,781 DEBUG Processing 788/897 atomic regions from SNP 236300 to 236900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,821 DEBUG Processing 600/648 atomic regions from SNP 179846 to 180446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,865 DEBUG Processing 671/1135 atomic regions from SNP 201280 to 201880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,929 DEBUG Processing 710/1023 atomic regions from SNP 212833 to 213433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,936 DEBUG Processing 817/858 atomic regions from SNP 244956 to 245556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,043 DEBUG Processing 789/897 atomic regions from SNP 236600 to 237200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,086 DEBUG Processing 601/648 atomic regions from SNP 180146 to 180746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,163 DEBUG Processing 672/1135 atomic regions from SNP 201580 to 202180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,168 DEBUG Processing 818/858 atomic regions from SNP 245256 to 245856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,188 DEBUG Processing 711/1023 atomic regions from SNP 213133 to 213733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,296 DEBUG Processing 790/897 atomic regions from SNP 236900 to 237500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,351 DEBUG Processing 602/648 atomic regions from SNP 180446 to 181046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,418 DEBUG Processing 819/858 atomic regions from SNP 245556 to 246156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,455 DEBUG Processing 712/1023 atomic regions from SNP 213433 to 214033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,462 DEBUG Processing 673/1135 atomic regions from SNP 201880 to 202480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,551 DEBUG Processing 791/897 atomic regions from SNP 237200 to 237800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,617 DEBUG Processing 603/648 atomic regions from SNP 180746 to 181346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,673 DEBUG Processing 820/858 atomic regions from SNP 245856 to 246456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,715 DEBUG Processing 713/1023 atomic regions from SNP 213733 to 214333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,733 DEBUG Processing 674/1135 atomic regions from SNP 202180 to 202780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,801 DEBUG Processing 792/897 atomic regions from SNP 237500 to 238100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,869 DEBUG Processing 604/648 atomic regions from SNP 181046 to 181646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,940 DEBUG Processing 821/858 atomic regions from SNP 246156 to 246756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,978 DEBUG Processing 714/1023 atomic regions from SNP 214033 to 214633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,002 DEBUG Processing 675/1135 atomic regions from SNP 202480 to 203080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,047 DEBUG Processing 793/897 atomic regions from SNP 237800 to 238400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,115 DEBUG Processing 605/648 atomic regions from SNP 181346 to 181946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,180 DEBUG Processing 822/858 atomic regions from SNP 246456 to 247056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,245 DEBUG Processing 715/1023 atomic regions from SNP 214333 to 214933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,273 DEBUG Processing 676/1135 atomic regions from SNP 202780 to 203380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,294 DEBUG Processing 794/897 atomic regions from SNP 238100 to 238700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,352 DEBUG Processing 606/648 atomic regions from SNP 181646 to 182246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,412 DEBUG Processing 823/858 atomic regions from SNP 246756 to 247356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,525 DEBUG Processing 716/1023 atomic regions from SNP 214633 to 215233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,544 DEBUG Processing 795/897 atomic regions from SNP 238400 to 239000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,545 DEBUG Processing 677/1135 atomic regions from SNP 203080 to 203680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,601 DEBUG Processing 607/648 atomic regions from SNP 181946 to 182546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,647 DEBUG Processing 824/858 atomic regions from SNP 247056 to 247656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,789 DEBUG Processing 796/897 atomic regions from SNP 238700 to 239300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,792 DEBUG Processing 717/1023 atomic regions from SNP 214933 to 215533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,819 DEBUG Processing 678/1135 atomic regions from SNP 203380 to 203980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,851 DEBUG Processing 608/648 atomic regions from SNP 182246 to 182846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,873 DEBUG Processing 825/858 atomic regions from SNP 247356 to 247956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,032 DEBUG Processing 797/897 atomic regions from SNP 239000 to 239600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,048 DEBUG Processing 718/1023 atomic regions from SNP 215233 to 215833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,098 DEBUG Processing 609/648 atomic regions from SNP 182546 to 183146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,110 DEBUG Processing 679/1135 atomic regions from SNP 203680 to 204280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,124 DEBUG Processing 826/858 atomic regions from SNP 247656 to 248256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,281 DEBUG Processing 798/897 atomic regions from SNP 239300 to 239900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,311 DEBUG Processing 719/1023 atomic regions from SNP 215533 to 216133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,346 DEBUG Processing 610/648 atomic regions from SNP 182846 to 183446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,362 DEBUG Processing 827/858 atomic regions from SNP 247956 to 248556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,406 DEBUG Processing 680/1135 atomic regions from SNP 203980 to 204580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,529 DEBUG Processing 799/897 atomic regions from SNP 239600 to 240200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,572 DEBUG Processing 720/1023 atomic regions from SNP 215833 to 216433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,600 DEBUG Processing 828/858 atomic regions from SNP 248256 to 248856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,608 DEBUG Processing 611/648 atomic regions from SNP 183146 to 183746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,677 DEBUG Processing 681/1135 atomic regions from SNP 204280 to 204880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,777 DEBUG Processing 800/897 atomic regions from SNP 239900 to 240500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,826 DEBUG Processing 721/1023 atomic regions from SNP 216133 to 216733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,857 DEBUG Processing 829/858 atomic regions from SNP 248556 to 249156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,869 DEBUG Processing 612/648 atomic regions from SNP 183446 to 184046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,966 DEBUG Processing 682/1135 atomic regions from SNP 204580 to 205180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,021 DEBUG Processing 801/897 atomic regions from SNP 240200 to 240800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,081 DEBUG Processing 722/1023 atomic regions from SNP 216433 to 217033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,119 DEBUG Processing 830/858 atomic regions from SNP 248856 to 249456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,124 DEBUG Processing 613/648 atomic regions from SNP 183746 to 184346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,259 DEBUG Processing 683/1135 atomic regions from SNP 204880 to 205480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,268 DEBUG Processing 802/897 atomic regions from SNP 240500 to 241100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,353 DEBUG Processing 723/1023 atomic regions from SNP 216733 to 217333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,371 DEBUG Processing 831/858 atomic regions from SNP 249156 to 249756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,389 DEBUG Processing 614/648 atomic regions from SNP 184046 to 184646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,513 DEBUG Processing 803/897 atomic regions from SNP 240800 to 241400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,551 DEBUG Processing 684/1135 atomic regions from SNP 205180 to 205780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,608 DEBUG Processing 832/858 atomic regions from SNP 249456 to 250056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,632 DEBUG Processing 615/648 atomic regions from SNP 184346 to 184946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,634 DEBUG Processing 724/1023 atomic regions from SNP 217033 to 217633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,766 DEBUG Processing 804/897 atomic regions from SNP 241100 to 241700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,825 DEBUG Processing 685/1135 atomic regions from SNP 205480 to 206080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,851 DEBUG Processing 833/858 atomic regions from SNP 249756 to 250356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,880 DEBUG Processing 616/648 atomic regions from SNP 184646 to 185246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,907 DEBUG Processing 725/1023 atomic regions from SNP 217333 to 217933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,022 DEBUG Processing 805/897 atomic regions from SNP 241400 to 242000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,089 DEBUG Processing 834/858 atomic regions from SNP 250056 to 250656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,092 DEBUG Processing 686/1135 atomic regions from SNP 205780 to 206380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,141 DEBUG Processing 617/648 atomic regions from SNP 184946 to 185546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,175 DEBUG Processing 726/1023 atomic regions from SNP 217633 to 218233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,281 DEBUG Processing 806/897 atomic regions from SNP 241700 to 242300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,327 DEBUG Processing 835/858 atomic regions from SNP 250356 to 250956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,359 DEBUG Processing 687/1135 atomic regions from SNP 206080 to 206680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,377 DEBUG Processing 618/648 atomic regions from SNP 185246 to 185846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,441 DEBUG Processing 727/1023 atomic regions from SNP 217933 to 218533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,530 DEBUG Processing 807/897 atomic regions from SNP 242000 to 242600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,585 DEBUG Processing 836/858 atomic regions from SNP 250656 to 251256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,615 DEBUG Processing 619/648 atomic regions from SNP 185546 to 186146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,631 DEBUG Processing 688/1135 atomic regions from SNP 206380 to 206980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,703 DEBUG Processing 728/1023 atomic regions from SNP 218233 to 218833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,780 DEBUG Processing 808/897 atomic regions from SNP 242300 to 242900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,828 DEBUG Processing 837/858 atomic regions from SNP 250956 to 251556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,860 DEBUG Processing 620/648 atomic regions from SNP 185846 to 186446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,909 DEBUG Processing 689/1135 atomic regions from SNP 206680 to 207280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,961 DEBUG Processing 729/1023 atomic regions from SNP 218533 to 219133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,031 DEBUG Processing 809/897 atomic regions from SNP 242600 to 243200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,063 DEBUG Processing 838/858 atomic regions from SNP 251256 to 251856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,119 DEBUG Processing 621/648 atomic regions from SNP 186146 to 186746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,193 DEBUG Processing 690/1135 atomic regions from SNP 206980 to 207580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,232 DEBUG Processing 730/1023 atomic regions from SNP 218833 to 219433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,275 DEBUG Processing 810/897 atomic regions from SNP 242900 to 243500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,320 DEBUG Processing 839/858 atomic regions from SNP 251556 to 252156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,384 DEBUG Processing 622/648 atomic regions from SNP 186446 to 187046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,469 DEBUG Processing 691/1135 atomic regions from SNP 207280 to 207880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,499 DEBUG Processing 731/1023 atomic regions from SNP 219133 to 219733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,519 DEBUG Processing 811/897 atomic regions from SNP 243200 to 243800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,572 DEBUG Processing 840/858 atomic regions from SNP 251856 to 252456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,662 DEBUG Processing 623/648 atomic regions from SNP 186746 to 187346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,764 DEBUG Processing 692/1135 atomic regions from SNP 207580 to 208180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,780 DEBUG Processing 812/897 atomic regions from SNP 243500 to 244100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,790 DEBUG Processing 732/1023 atomic regions from SNP 219433 to 220033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,824 DEBUG Processing 841/858 atomic regions from SNP 252156 to 252756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,920 DEBUG Processing 624/648 atomic regions from SNP 187046 to 187646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,032 DEBUG Processing 693/1135 atomic regions from SNP 207880 to 208480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,037 DEBUG Processing 813/897 atomic regions from SNP 243800 to 244400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,073 DEBUG Processing 733/1023 atomic regions from SNP 219733 to 220333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,077 DEBUG Processing 842/858 atomic regions from SNP 252456 to 253056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,169 DEBUG Processing 625/648 atomic regions from SNP 187346 to 187946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,295 DEBUG Processing 814/897 atomic regions from SNP 244100 to 244700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,307 DEBUG Processing 694/1135 atomic regions from SNP 208180 to 208780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,355 DEBUG Processing 843/858 atomic regions from SNP 252756 to 253356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,366 DEBUG Processing 734/1023 atomic regions from SNP 220033 to 220633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,398 DEBUG Processing 626/648 atomic regions from SNP 187646 to 188246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,554 DEBUG Processing 815/897 atomic regions from SNP 244400 to 245000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,574 DEBUG Processing 695/1135 atomic regions from SNP 208480 to 209080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,628 DEBUG Processing 844/858 atomic regions from SNP 253056 to 253656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,633 DEBUG Processing 627/648 atomic regions from SNP 187946 to 188546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,657 DEBUG Processing 735/1023 atomic regions from SNP 220333 to 220933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,806 DEBUG Processing 816/897 atomic regions from SNP 244700 to 245300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,837 DEBUG Processing 696/1135 atomic regions from SNP 208780 to 209380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,874 DEBUG Processing 628/648 atomic regions from SNP 188246 to 188846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,891 DEBUG Processing 845/858 atomic regions from SNP 253356 to 253956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,944 DEBUG Processing 736/1023 atomic regions from SNP 220633 to 221233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,060 DEBUG Processing 817/897 atomic regions from SNP 245000 to 245600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,105 DEBUG Processing 697/1135 atomic regions from SNP 209080 to 209680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,113 DEBUG Processing 629/648 atomic regions from SNP 188546 to 189146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,140 DEBUG Processing 846/858 atomic regions from SNP 253656 to 254256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,227 DEBUG Processing 737/1023 atomic regions from SNP 220933 to 221533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,306 DEBUG Processing 818/897 atomic regions from SNP 245300 to 245900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,344 DEBUG Processing 630/648 atomic regions from SNP 188846 to 189446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,371 DEBUG Processing 698/1135 atomic regions from SNP 209380 to 209980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,402 DEBUG Processing 847/858 atomic regions from SNP 253956 to 254556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,479 DEBUG Processing 738/1023 atomic regions from SNP 221233 to 221833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,551 DEBUG Processing 819/897 atomic regions from SNP 245600 to 246200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,571 DEBUG Processing 631/648 atomic regions from SNP 189146 to 189746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,632 DEBUG Processing 699/1135 atomic regions from SNP 209680 to 210280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,654 DEBUG Processing 848/858 atomic regions from SNP 254256 to 254856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,749 DEBUG Processing 739/1023 atomic regions from SNP 221533 to 222133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,798 DEBUG Processing 820/897 atomic regions from SNP 245900 to 246500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,804 DEBUG Processing 632/648 atomic regions from SNP 189446 to 190046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,887 DEBUG Processing 849/858 atomic regions from SNP 254556 to 255156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,899 DEBUG Processing 700/1135 atomic regions from SNP 209980 to 210580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,018 DEBUG Processing 740/1023 atomic regions from SNP 221833 to 222433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,038 DEBUG Processing 633/648 atomic regions from SNP 189746 to 190346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,045 DEBUG Processing 821/897 atomic regions from SNP 246200 to 246800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,127 DEBUG Processing 850/858 atomic regions from SNP 254856 to 255456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,170 DEBUG Processing 701/1135 atomic regions from SNP 210280 to 210880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,272 DEBUG Processing 634/648 atomic regions from SNP 190046 to 190646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,285 DEBUG Processing 741/1023 atomic regions from SNP 222133 to 222733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,293 DEBUG Processing 822/897 atomic regions from SNP 246500 to 247100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,379 DEBUG Processing 851/858 atomic regions from SNP 255156 to 255756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,442 DEBUG Processing 702/1135 atomic regions from SNP 210580 to 211180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,527 DEBUG Processing 635/648 atomic regions from SNP 190346 to 190946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,536 DEBUG Processing 823/897 atomic regions from SNP 246800 to 247400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,548 DEBUG Processing 742/1023 atomic regions from SNP 222433 to 223033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,633 DEBUG Processing 852/858 atomic regions from SNP 255456 to 256056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,712 DEBUG Processing 703/1135 atomic regions from SNP 210880 to 211480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,788 DEBUG Processing 824/897 atomic regions from SNP 247100 to 247700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,796 DEBUG Processing 636/648 atomic regions from SNP 190646 to 191246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,818 DEBUG Processing 743/1023 atomic regions from SNP 222733 to 223333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,890 DEBUG Processing 853/858 atomic regions from SNP 255756 to 256356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,981 DEBUG Processing 704/1135 atomic regions from SNP 211180 to 211780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,041 DEBUG Processing 825/897 atomic regions from SNP 247400 to 248000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,059 DEBUG Processing 637/648 atomic regions from SNP 190946 to 191546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,103 DEBUG Processing 744/1023 atomic regions from SNP 223033 to 223633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,141 DEBUG Processing 854/858 atomic regions from SNP 256056 to 256656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,254 DEBUG Processing 705/1135 atomic regions from SNP 211480 to 212080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,291 DEBUG Processing 826/897 atomic regions from SNP 247700 to 248300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,305 DEBUG Processing 638/648 atomic regions from SNP 191246 to 191846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,374 DEBUG Processing 855/858 atomic regions from SNP 256356 to 256956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,389 DEBUG Processing 745/1023 atomic regions from SNP 223333 to 223933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,525 DEBUG Processing 706/1135 atomic regions from SNP 211780 to 212380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,542 DEBUG Processing 827/897 atomic regions from SNP 248000 to 248600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,556 DEBUG Processing 639/648 atomic regions from SNP 191546 to 192146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,619 DEBUG Processing 856/858 atomic regions from SNP 256656 to 257256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,676 DEBUG Processing 746/1023 atomic regions from SNP 223633 to 224233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,789 DEBUG Processing 828/897 atomic regions from SNP 248300 to 248900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,789 DEBUG Processing 640/648 atomic regions from SNP 191846 to 192446 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,795 DEBUG Processing 707/1135 atomic regions from SNP 212080 to 212680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,876 DEBUG Processing 857/858 atomic regions from SNP 256956 to 257556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,944 DEBUG Processing 747/1023 atomic regions from SNP 223933 to 224533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,036 DEBUG Processing 829/897 atomic regions from SNP 248600 to 249200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,047 DEBUG Processing 641/648 atomic regions from SNP 192146 to 192746 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,061 DEBUG Processing 708/1135 atomic regions from SNP 212380 to 212980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,138 DEBUG Processing 858/858 atomic regions from SNP 257256 to 257856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,211 DEBUG Processing 748/1023 atomic regions from SNP 224233 to 224833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,275 DEBUG Processing 830/897 atomic regions from SNP 248900 to 249500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,285 DEBUG Unique SNPs positions in subchromosome 1: 257857 2025-01-31 09:46:53,317 DEBUG Processing 642/648 atomic regions from SNP 192446 to 193046 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,329 DEBUG Processing 709/1135 atomic regions from SNP 212680 to 213280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,477 DEBUG Processing 749/1023 atomic regions from SNP 224533 to 225133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,521 DEBUG Processing 831/897 atomic regions from SNP 249200 to 249800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,572 DEBUG Processing 643/648 atomic regions from SNP 192746 to 193346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,598 DEBUG Processing 710/1135 atomic regions from SNP 212980 to 213580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,735 DEBUG Processing 750/1023 atomic regions from SNP 224833 to 225433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,764 DEBUG Processing 832/897 atomic regions from SNP 249500 to 250100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,810 DEBUG Processing 644/648 atomic regions from SNP 193046 to 193646 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,865 DEBUG Processing 711/1135 atomic regions from SNP 213280 to 213880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,996 DEBUG Processing 751/1023 atomic regions from SNP 225133 to 225733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,004 DEBUG Processing 833/897 atomic regions from SNP 249800 to 250400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,070 DEBUG Processing 645/648 atomic regions from SNP 193346 to 193946 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,131 DEBUG Processing 712/1135 atomic regions from SNP 213580 to 214180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,251 DEBUG Processing 834/897 atomic regions from SNP 250100 to 250700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,282 DEBUG Processing 752/1023 atomic regions from SNP 225433 to 226033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,337 DEBUG Processing 646/648 atomic regions from SNP 193646 to 194246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,394 DEBUG Processing 713/1135 atomic regions from SNP 213880 to 214480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,501 DEBUG Processing 835/897 atomic regions from SNP 250400 to 251000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,574 DEBUG Processing 753/1023 atomic regions from SNP 225733 to 226333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,604 DEBUG Processing 647/648 atomic regions from SNP 193946 to 194546 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,659 DEBUG Processing 714/1135 atomic regions from SNP 214180 to 214780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,755 DEBUG Processing 836/897 atomic regions from SNP 250700 to 251300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,866 DEBUG Processing 754/1023 atomic regions from SNP 226033 to 226633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,868 DEBUG Processing 648/648 atomic regions from SNP 194246 to 194846 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,955 DEBUG Processing 715/1135 atomic regions from SNP 214480 to 215080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,999 DEBUG Processing 837/897 atomic regions from SNP 251000 to 251600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,019 DEBUG Unique SNPs positions in subchromosome 2: 194847 2025-01-31 09:46:55,158 DEBUG Processing 755/1023 atomic regions from SNP 226333 to 226933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,240 DEBUG Processing 838/897 atomic regions from SNP 251300 to 251900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,241 DEBUG Processing 716/1135 atomic regions from SNP 214780 to 215380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,424 DEBUG Processing 756/1023 atomic regions from SNP 226633 to 227233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,477 DEBUG Processing 839/897 atomic regions from SNP 251600 to 252200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,500 DEBUG Processing 717/1135 atomic regions from SNP 215080 to 215680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,710 DEBUG Processing 757/1023 atomic regions from SNP 226933 to 227533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,717 DEBUG Processing 840/897 atomic regions from SNP 251900 to 252500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,761 DEBUG Processing 718/1135 atomic regions from SNP 215380 to 215980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,958 DEBUG Processing 841/897 atomic regions from SNP 252200 to 252800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,998 DEBUG Processing 758/1023 atomic regions from SNP 227233 to 227833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,017 DEBUG Processing 719/1135 atomic regions from SNP 215680 to 216280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,202 DEBUG Processing 842/897 atomic regions from SNP 252500 to 253100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,268 DEBUG Processing 759/1023 atomic regions from SNP 227533 to 228133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,276 DEBUG Processing 720/1135 atomic regions from SNP 215980 to 216580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,448 DEBUG Processing 843/897 atomic regions from SNP 252800 to 253400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,543 DEBUG Processing 721/1135 atomic regions from SNP 216280 to 216880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,546 DEBUG Processing 760/1023 atomic regions from SNP 227833 to 228433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,696 DEBUG Processing 844/897 atomic regions from SNP 253100 to 253700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,807 DEBUG Processing 761/1023 atomic regions from SNP 228133 to 228733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,810 DEBUG Processing 722/1135 atomic regions from SNP 216580 to 217180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,949 DEBUG Processing 845/897 atomic regions from SNP 253400 to 254000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,075 DEBUG Processing 762/1023 atomic regions from SNP 228433 to 229033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,075 DEBUG Processing 723/1135 atomic regions from SNP 216880 to 217480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,202 DEBUG Processing 846/897 atomic regions from SNP 253700 to 254300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,340 DEBUG Processing 724/1135 atomic regions from SNP 217180 to 217780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,352 DEBUG Processing 763/1023 atomic regions from SNP 228733 to 229333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,463 DEBUG Processing 847/897 atomic regions from SNP 254000 to 254600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,622 DEBUG Processing 725/1135 atomic regions from SNP 217480 to 218080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,654 DEBUG Processing 764/1023 atomic regions from SNP 229033 to 229633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,733 DEBUG Processing 848/897 atomic regions from SNP 254300 to 254900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,889 DEBUG Processing 726/1135 atomic regions from SNP 217780 to 218380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,947 DEBUG Processing 765/1023 atomic regions from SNP 229333 to 229933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,994 DEBUG Processing 849/897 atomic regions from SNP 254600 to 255200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,157 DEBUG Processing 727/1135 atomic regions from SNP 218080 to 218680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,233 DEBUG Processing 766/1023 atomic regions from SNP 229633 to 230233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,252 DEBUG Processing 850/897 atomic regions from SNP 254900 to 255500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,425 DEBUG Processing 728/1135 atomic regions from SNP 218380 to 218980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,504 DEBUG Processing 851/897 atomic regions from SNP 255200 to 255800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,510 DEBUG Processing 767/1023 atomic regions from SNP 229933 to 230533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,711 DEBUG Processing 729/1135 atomic regions from SNP 218680 to 219280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,757 DEBUG Processing 852/897 atomic regions from SNP 255500 to 256100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,796 DEBUG Processing 768/1023 atomic regions from SNP 230233 to 230833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,007 DEBUG Processing 730/1135 atomic regions from SNP 218980 to 219580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,017 DEBUG Processing 853/897 atomic regions from SNP 255800 to 256400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,071 DEBUG Processing 769/1023 atomic regions from SNP 230533 to 231133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,269 DEBUG Processing 854/897 atomic regions from SNP 256100 to 256700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,305 DEBUG Processing 731/1135 atomic regions from SNP 219280 to 219880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,336 DEBUG Processing 770/1023 atomic regions from SNP 230833 to 231433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,517 DEBUG Processing 855/897 atomic regions from SNP 256400 to 257000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,599 DEBUG Processing 771/1023 atomic regions from SNP 231133 to 231733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,600 DEBUG Processing 732/1135 atomic regions from SNP 219580 to 220180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,770 DEBUG Processing 856/897 atomic regions from SNP 256700 to 257300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,866 DEBUG Processing 772/1023 atomic regions from SNP 231433 to 232033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,900 DEBUG Processing 733/1135 atomic regions from SNP 219880 to 220480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,015 DEBUG Processing 857/897 atomic regions from SNP 257000 to 257600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,131 DEBUG Processing 773/1023 atomic regions from SNP 231733 to 232333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,192 DEBUG Processing 734/1135 atomic regions from SNP 220180 to 220780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,260 DEBUG Processing 858/897 atomic regions from SNP 257300 to 257900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,395 DEBUG Processing 774/1023 atomic regions from SNP 232033 to 232633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,464 DEBUG Processing 735/1135 atomic regions from SNP 220480 to 221080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,505 DEBUG Processing 859/897 atomic regions from SNP 257600 to 258200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,662 DEBUG Processing 775/1023 atomic regions from SNP 232333 to 232933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,747 DEBUG Processing 736/1135 atomic regions from SNP 220780 to 221380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,751 DEBUG Processing 860/897 atomic regions from SNP 257900 to 258500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,930 DEBUG Processing 776/1023 atomic regions from SNP 232633 to 233233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,998 DEBUG Processing 861/897 atomic regions from SNP 258200 to 258800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,014 DEBUG Processing 737/1135 atomic regions from SNP 221080 to 221680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,192 DEBUG Processing 777/1023 atomic regions from SNP 232933 to 233533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,250 DEBUG Processing 862/897 atomic regions from SNP 258500 to 259100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,281 DEBUG Processing 738/1135 atomic regions from SNP 221380 to 221980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,452 DEBUG Processing 778/1023 atomic regions from SNP 233233 to 233833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,505 DEBUG Processing 863/897 atomic regions from SNP 258800 to 259400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,550 DEBUG Processing 739/1135 atomic regions from SNP 221680 to 222280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,713 DEBUG Processing 779/1023 atomic regions from SNP 233533 to 234133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,760 DEBUG Processing 864/897 atomic regions from SNP 259100 to 259700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,819 DEBUG Processing 740/1135 atomic regions from SNP 221980 to 222580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,977 DEBUG Processing 780/1023 atomic regions from SNP 233833 to 234433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,014 DEBUG Processing 865/897 atomic regions from SNP 259400 to 260000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,081 DEBUG Processing 741/1135 atomic regions from SNP 222280 to 222880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,242 DEBUG Processing 781/1023 atomic regions from SNP 234133 to 234733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,260 DEBUG Processing 866/897 atomic regions from SNP 259700 to 260300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,340 DEBUG Processing 742/1135 atomic regions from SNP 222580 to 223180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,505 DEBUG Processing 782/1023 atomic regions from SNP 234433 to 235033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,511 DEBUG Processing 867/897 atomic regions from SNP 260000 to 260600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,601 DEBUG Processing 743/1135 atomic regions from SNP 222880 to 223480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,763 DEBUG Processing 783/1023 atomic regions from SNP 234733 to 235333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,763 DEBUG Processing 868/897 atomic regions from SNP 260300 to 260900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,862 DEBUG Processing 744/1135 atomic regions from SNP 223180 to 223780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,016 DEBUG Processing 869/897 atomic regions from SNP 260600 to 261200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,019 DEBUG Processing 784/1023 atomic regions from SNP 235033 to 235633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,124 DEBUG Processing 745/1135 atomic regions from SNP 223480 to 224080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,263 DEBUG Processing 870/897 atomic regions from SNP 260900 to 261500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,278 DEBUG Processing 785/1023 atomic regions from SNP 235333 to 235933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,386 DEBUG Processing 746/1135 atomic regions from SNP 223780 to 224380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,505 DEBUG Processing 871/897 atomic regions from SNP 261200 to 261800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,533 DEBUG Processing 786/1023 atomic regions from SNP 235633 to 236233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,676 DEBUG Processing 747/1135 atomic regions from SNP 224080 to 224680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,747 DEBUG Processing 872/897 atomic regions from SNP 261500 to 262100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,780 DEBUG Processing 787/1023 atomic regions from SNP 235933 to 236533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,954 DEBUG Processing 748/1135 atomic regions from SNP 224380 to 224980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,986 DEBUG Processing 873/897 atomic regions from SNP 261800 to 262400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,035 DEBUG Processing 788/1023 atomic regions from SNP 236233 to 236833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,229 DEBUG Processing 874/897 atomic regions from SNP 262100 to 262700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,249 DEBUG Processing 749/1135 atomic regions from SNP 224680 to 225280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,298 DEBUG Processing 789/1023 atomic regions from SNP 236533 to 237133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,466 DEBUG Processing 875/897 atomic regions from SNP 262400 to 263000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,547 DEBUG Processing 750/1135 atomic regions from SNP 224980 to 225580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,558 DEBUG Processing 790/1023 atomic regions from SNP 236833 to 237433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,702 DEBUG Processing 876/897 atomic regions from SNP 262700 to 263300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,830 DEBUG Processing 791/1023 atomic regions from SNP 237133 to 237733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,840 DEBUG Processing 751/1135 atomic regions from SNP 225280 to 225880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,958 DEBUG Processing 877/897 atomic regions from SNP 263000 to 263600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,102 DEBUG Processing 792/1023 atomic regions from SNP 237433 to 238033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,142 DEBUG Processing 752/1135 atomic regions from SNP 225580 to 226180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,204 DEBUG Processing 878/897 atomic regions from SNP 263300 to 263900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,365 DEBUG Processing 793/1023 atomic regions from SNP 237733 to 238333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,432 DEBUG Processing 753/1135 atomic regions from SNP 225880 to 226480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,456 DEBUG Processing 879/897 atomic regions from SNP 263600 to 264200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,626 DEBUG Processing 794/1023 atomic regions from SNP 238033 to 238633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,706 DEBUG Processing 880/897 atomic regions from SNP 263900 to 264500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,720 DEBUG Processing 754/1135 atomic regions from SNP 226180 to 226780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,890 DEBUG Processing 795/1023 atomic regions from SNP 238333 to 238933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,952 DEBUG Processing 881/897 atomic regions from SNP 264200 to 264800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,010 DEBUG Processing 755/1135 atomic regions from SNP 226480 to 227080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,141 DEBUG Processing 796/1023 atomic regions from SNP 238633 to 239233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,191 DEBUG Processing 882/897 atomic regions from SNP 264500 to 265100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,297 DEBUG Processing 756/1135 atomic regions from SNP 226780 to 227380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,395 DEBUG Processing 797/1023 atomic regions from SNP 238933 to 239533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,429 DEBUG Processing 883/897 atomic regions from SNP 264800 to 265400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,591 DEBUG Processing 757/1135 atomic regions from SNP 227080 to 227680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,645 DEBUG Processing 798/1023 atomic regions from SNP 239233 to 239833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,674 DEBUG Processing 884/897 atomic regions from SNP 265100 to 265700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,885 DEBUG Processing 758/1135 atomic regions from SNP 227380 to 227980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,905 DEBUG Processing 799/1023 atomic regions from SNP 239533 to 240133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,921 DEBUG Processing 885/897 atomic regions from SNP 265400 to 266000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,166 DEBUG Processing 800/1023 atomic regions from SNP 239833 to 240433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,167 DEBUG Processing 886/897 atomic regions from SNP 265700 to 266300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,172 DEBUG Processing 759/1135 atomic regions from SNP 227680 to 228280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,414 DEBUG Processing 887/897 atomic regions from SNP 266000 to 266600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,428 DEBUG Processing 801/1023 atomic regions from SNP 240133 to 240733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,441 DEBUG Processing 760/1135 atomic regions from SNP 227980 to 228580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,661 DEBUG Processing 888/897 atomic regions from SNP 266300 to 266900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,682 DEBUG Processing 802/1023 atomic regions from SNP 240433 to 241033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,721 DEBUG Processing 761/1135 atomic regions from SNP 228280 to 228880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,909 DEBUG Processing 889/897 atomic regions from SNP 266600 to 267200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,938 DEBUG Processing 803/1023 atomic regions from SNP 240733 to 241333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,017 DEBUG Processing 762/1135 atomic regions from SNP 228580 to 229180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,167 DEBUG Processing 890/897 atomic regions from SNP 266900 to 267500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,202 DEBUG Processing 804/1023 atomic regions from SNP 241033 to 241633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,308 DEBUG Processing 763/1135 atomic regions from SNP 228880 to 229480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,427 DEBUG Processing 891/897 atomic regions from SNP 267200 to 267800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,470 DEBUG Processing 805/1023 atomic regions from SNP 241333 to 241933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,584 DEBUG Processing 764/1135 atomic regions from SNP 229180 to 229780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,680 DEBUG Processing 892/897 atomic regions from SNP 267500 to 268100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,733 DEBUG Processing 806/1023 atomic regions from SNP 241633 to 242233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,870 DEBUG Processing 765/1135 atomic regions from SNP 229480 to 230080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,932 DEBUG Processing 893/897 atomic regions from SNP 267800 to 268400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,000 DEBUG Processing 807/1023 atomic regions from SNP 241933 to 242533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,163 DEBUG Processing 766/1135 atomic regions from SNP 229780 to 230380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,181 DEBUG Processing 894/897 atomic regions from SNP 268100 to 268700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,227 DEBUG Subchromosome time: 193.8908226659987, subchromosome SNPs: 194847 2025-01-31 09:47:09,227 DEBUG Estimated BADs: [1.06, 2.11, 0.42, 1.06, 2.11, 0.70, 4.22, 2.11, 0.70, 6.34, 12.67, 4.22, 0.70, 2.11, 0.53, 1.06, 2.11, 0.35, 1.06, 2.11, 4.22, 0.70, 0.21, 2.11, 4.22, 8.45, 4.22, 8.45, 2.11, 4.22, 8.45] SNP counts: [8862, 13504, 4512, 4394, 1625, 17166, 1153, 2807, 8756, 3040, 510, 10545, 6806, 17455, 29134, 9023, 5371, 5366, 7250, 17385, 6635, 2704, 2941, 1684, 29230, 8707, 8465, 2046, 7494, 13395, 2701] SNP IDs counts: [8862, 13504, 4512, 4394, 1625, 17166, 1153, 2807, 8756, 3040, 510, 10545, 6806, 17455, 29134, 9023, 5371, 5366, 7250, 17385, 6635, 2704, 2941, 1684, 29230, 8707, 8465, 2046, 7494, 13395, 2701] Critical gap: 685909bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 8.52Mbp, 16.25Mbp, 19.04Mbp, 21.71Mbp, 22.60Mbp, 32.70Mbp, 33.31Mbp, 34.87Mbp, 40.13Mbp, 41.86Mbp[0.88Mbp], 43.06Mbp, 48.69Mbp, 52.77Mbp, 64.07Mbp, 81.58Mbp, 86.61Mbp, 89.72Mbp, 93.02Mbp, 97.21Mbp, 106.76Mbp, 110.35Mbp, 111.93Mbp, 114.03Mbp, 114.99Mbp, 131.68Mbp, 136.24Mbp, 140.68Mbp, 141.75Mbp, 147.85Mbp, 154.84Mbp, 156.51Mbp] 2025-01-31 09:47:09,227 DEBUG chr4 time: 193.89145480596926 s 2025-01-31 09:47:09,256 DEBUG Processing 808/1023 atomic regions from SNP 242233 to 242833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,375 DEBUG chr4: Fitting background model for 31 segments 2025-01-31 09:47:09,434 DEBUG Processing 895/897 atomic regions from SNP 268400 to 269000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,465 DEBUG Processing 767/1135 atomic regions from SNP 230080 to 230680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,519 DEBUG Processing 809/1023 atomic regions from SNP 242533 to 243133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,687 DEBUG Processing 896/897 atomic regions from SNP 268700 to 269300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,774 DEBUG Processing 768/1135 atomic regions from SNP 230380 to 230980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,790 DEBUG Processing 810/1023 atomic regions from SNP 242833 to 243433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,940 DEBUG Processing 897/897 atomic regions from SNP 269000 to 269600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,060 DEBUG Processing 811/1023 atomic regions from SNP 243133 to 243733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,071 DEBUG Unique SNPs positions in subchromosome 1: 269601 2025-01-31 09:47:10,084 DEBUG Processing 769/1135 atomic regions from SNP 230680 to 231280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,329 DEBUG Processing 812/1023 atomic regions from SNP 243433 to 244033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,390 DEBUG Processing 770/1135 atomic regions from SNP 230980 to 231580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,600 DEBUG Processing 813/1023 atomic regions from SNP 243733 to 244333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,694 DEBUG Processing 771/1135 atomic regions from SNP 231280 to 231880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,870 DEBUG Processing 814/1023 atomic regions from SNP 244033 to 244633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,989 DEBUG Processing 772/1135 atomic regions from SNP 231580 to 232180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,148 DEBUG Processing 815/1023 atomic regions from SNP 244333 to 244933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,271 DEBUG Processing 773/1135 atomic regions from SNP 231880 to 232480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,410 DEBUG Processing 816/1023 atomic regions from SNP 244633 to 245233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,551 DEBUG Processing 774/1135 atomic regions from SNP 232180 to 232780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,669 DEBUG Processing 817/1023 atomic regions from SNP 244933 to 245533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,848 DEBUG Processing 775/1135 atomic regions from SNP 232480 to 233080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,927 DEBUG Processing 818/1023 atomic regions from SNP 245233 to 245833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,137 DEBUG Processing 776/1135 atomic regions from SNP 232780 to 233380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,192 DEBUG Processing 819/1023 atomic regions from SNP 245533 to 246133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,410 DEBUG Processing 777/1135 atomic regions from SNP 233080 to 233680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,455 DEBUG Processing 820/1023 atomic regions from SNP 245833 to 246433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,712 DEBUG Processing 778/1135 atomic regions from SNP 233380 to 233980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,733 DEBUG Processing 821/1023 atomic regions from SNP 246133 to 246733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,003 DEBUG Processing 822/1023 atomic regions from SNP 246433 to 247033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,017 DEBUG Processing 779/1135 atomic regions from SNP 233680 to 234280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,277 DEBUG Processing 823/1023 atomic regions from SNP 246733 to 247333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,329 DEBUG Processing 780/1135 atomic regions from SNP 233980 to 234580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,551 DEBUG Processing 824/1023 atomic regions from SNP 247033 to 247633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,631 DEBUG Processing 781/1135 atomic regions from SNP 234280 to 234880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,813 DEBUG Processing 825/1023 atomic regions from SNP 247333 to 247933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,918 DEBUG Processing 782/1135 atomic regions from SNP 234580 to 235180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,067 DEBUG Processing 826/1023 atomic regions from SNP 247633 to 248233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,205 DEBUG Processing 783/1135 atomic regions from SNP 234880 to 235480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,324 DEBUG Processing 827/1023 atomic regions from SNP 247933 to 248533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,486 DEBUG Processing 784/1135 atomic regions from SNP 235180 to 235780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,587 DEBUG Processing 828/1023 atomic regions from SNP 248233 to 248833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,754 DEBUG Processing 785/1135 atomic regions from SNP 235480 to 236080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,848 DEBUG Processing 829/1023 atomic regions from SNP 248533 to 249133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,024 DEBUG Processing 786/1135 atomic regions from SNP 235780 to 236380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,111 DEBUG Processing 830/1023 atomic regions from SNP 248833 to 249433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,294 DEBUG Processing 787/1135 atomic regions from SNP 236080 to 236680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,378 DEBUG Processing 831/1023 atomic regions from SNP 249133 to 249733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,567 DEBUG Processing 788/1135 atomic regions from SNP 236380 to 236980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,640 DEBUG Processing 832/1023 atomic regions from SNP 249433 to 250033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,841 DEBUG Processing 789/1135 atomic regions from SNP 236680 to 237280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,909 DEBUG Processing 833/1023 atomic regions from SNP 249733 to 250333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,049 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:47:16,115 DEBUG Processing 790/1135 atomic regions from SNP 236980 to 237580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,198 DEBUG Processing 834/1023 atomic regions from SNP 250033 to 250633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,388 DEBUG Processing 791/1135 atomic regions from SNP 237280 to 237880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,484 DEBUG Processing 835/1023 atomic regions from SNP 250333 to 250933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,659 DEBUG Processing 792/1135 atomic regions from SNP 237580 to 238180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,750 DEBUG Processing 836/1023 atomic regions from SNP 250633 to 251233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,930 DEBUG Processing 793/1135 atomic regions from SNP 237880 to 238480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,024 DEBUG Processing 837/1023 atomic regions from SNP 250933 to 251533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,218 DEBUG Processing 794/1135 atomic regions from SNP 238180 to 238780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,306 DEBUG Processing 838/1023 atomic regions from SNP 251233 to 251833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,493 DEBUG Processing 795/1135 atomic regions from SNP 238480 to 239080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,573 DEBUG Processing 839/1023 atomic regions from SNP 251533 to 252133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,768 DEBUG Processing 796/1135 atomic regions from SNP 238780 to 239380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,836 DEBUG Processing 840/1023 atomic regions from SNP 251833 to 252433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,046 DEBUG Processing 797/1135 atomic regions from SNP 239080 to 239680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,101 DEBUG Processing 841/1023 atomic regions from SNP 252133 to 252733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,332 DEBUG Processing 798/1135 atomic regions from SNP 239380 to 239980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,364 DEBUG Processing 842/1023 atomic regions from SNP 252433 to 253033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,619 DEBUG Processing 799/1135 atomic regions from SNP 239680 to 240280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,630 DEBUG Processing 843/1023 atomic regions from SNP 252733 to 253333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,891 DEBUG Processing 800/1135 atomic regions from SNP 239980 to 240580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,897 DEBUG Processing 844/1023 atomic regions from SNP 253033 to 253633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,168 DEBUG Processing 845/1023 atomic regions from SNP 253333 to 253933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,169 DEBUG Processing 801/1135 atomic regions from SNP 240280 to 240880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,439 DEBUG Processing 846/1023 atomic regions from SNP 253633 to 254233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,445 DEBUG Processing 802/1135 atomic regions from SNP 240580 to 241180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,708 DEBUG Processing 847/1023 atomic regions from SNP 253933 to 254533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,720 DEBUG Processing 803/1135 atomic regions from SNP 240880 to 241480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,977 DEBUG Processing 848/1023 atomic regions from SNP 254233 to 254833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,992 DEBUG Processing 804/1135 atomic regions from SNP 241180 to 241780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,252 DEBUG Processing 849/1023 atomic regions from SNP 254533 to 255133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,269 DEBUG Processing 805/1135 atomic regions from SNP 241480 to 242080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,544 DEBUG Processing 850/1023 atomic regions from SNP 254833 to 255433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,563 DEBUG Processing 806/1135 atomic regions from SNP 241780 to 242380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,815 DEBUG Processing 851/1023 atomic regions from SNP 255133 to 255733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,836 DEBUG Processing 807/1135 atomic regions from SNP 242080 to 242680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,086 DEBUG Processing 852/1023 atomic regions from SNP 255433 to 256033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,109 DEBUG Processing 808/1135 atomic regions from SNP 242380 to 242980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,358 DEBUG Processing 853/1023 atomic regions from SNP 255733 to 256333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,386 DEBUG Processing 809/1135 atomic regions from SNP 242680 to 243280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,642 DEBUG Processing 854/1023 atomic regions from SNP 256033 to 256633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,668 DEBUG Processing 810/1135 atomic regions from SNP 242980 to 243580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,915 DEBUG Processing 855/1023 atomic regions from SNP 256333 to 256933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,947 DEBUG Processing 811/1135 atomic regions from SNP 243280 to 243880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,183 DEBUG Processing 856/1023 atomic regions from SNP 256633 to 257233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,222 DEBUG Processing 812/1135 atomic regions from SNP 243580 to 244180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,450 DEBUG Processing 857/1023 atomic regions from SNP 256933 to 257533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,464 DEBUG Subchromosome time: 272.44873046700377, subchromosome SNPs: 257857 2025-01-31 09:47:22,464 DEBUG Estimated BADs: [2.02, 0.67, 2.02, 6.06, 2.02, 10.10, 4.04, 0.51, 1.01, 0.67, 2.02, 0.34, 2.02, 0.40, 2.02, 0.40, 1.01, 2.02, 8.08, 2.02, 4.04, 8.08, 2.02, 6.06, 2.02, 8.08, 1.01, 6.06, 4.04] SNP counts: [4909, 22677, 6160, 2291, 8533, 1387, 14602, 3586, 8088, 8988, 6051, 14956, 9293, 5113, 11742, 9857, 14196, 17027, 600, 10574, 7126, 3311, 8582, 9997, 7966, 741, 7371, 18148, 13985] SNP IDs counts: [4909, 22677, 6160, 2291, 8533, 1387, 14602, 3586, 8088, 8988, 6051, 14956, 9293, 5113, 11742, 9857, 14196, 17027, 600, 10574, 7126, 3311, 8582, 9997, 7966, 741, 7371, 18148, 13985] Critical gap: 672891bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.90Mbp, 20.86Mbp, 24.32Mbp, 25.54Mbp, 30.51Mbp, 31.24Mbp, 39.12Mbp, 41.18Mbp, 45.88Mbp, 51.05Mbp, 54.29Mbp, 63.39Mbp, 68.47Mbp, 71.56Mbp, 77.94Mbp, 83.81Mbp, 92.07Mbp, 103.65Mbp, 103.97Mbp, 110.09Mbp, 113.84Mbp, 115.58Mbp, 120.08Mbp, 125.41Mbp, 129.72Mbp, 130.16Mbp, 134.13Mbp, 143.97Mbp, 151.83Mbp] 2025-01-31 09:47:22,465 DEBUG chr5 time: 272.4494589479873 s 2025-01-31 09:47:22,493 DEBUG Processing 813/1135 atomic regions from SNP 243880 to 244480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,607 DEBUG chr5: Fitting background model for 29 segments 2025-01-31 09:47:22,720 DEBUG Processing 858/1023 atomic regions from SNP 257233 to 257833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,766 DEBUG Processing 814/1135 atomic regions from SNP 244180 to 244780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,994 DEBUG Processing 859/1023 atomic regions from SNP 257533 to 258133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,040 DEBUG Processing 815/1135 atomic regions from SNP 244480 to 245080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,261 DEBUG Processing 860/1023 atomic regions from SNP 257833 to 258433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,313 DEBUG Processing 816/1135 atomic regions from SNP 244780 to 245380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,527 DEBUG Processing 861/1023 atomic regions from SNP 258133 to 258733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,586 DEBUG Processing 817/1135 atomic regions from SNP 245080 to 245680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,789 DEBUG Processing 862/1023 atomic regions from SNP 258433 to 259033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,860 DEBUG Processing 818/1135 atomic regions from SNP 245380 to 245980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,049 DEBUG Processing 863/1023 atomic regions from SNP 258733 to 259333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,132 DEBUG Processing 819/1135 atomic regions from SNP 245680 to 246280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,301 DEBUG Processing 864/1023 atomic regions from SNP 259033 to 259633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,401 DEBUG Processing 820/1135 atomic regions from SNP 245980 to 246580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,557 DEBUG Processing 865/1023 atomic regions from SNP 259333 to 259933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,674 DEBUG Processing 821/1135 atomic regions from SNP 246280 to 246880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,821 DEBUG Processing 866/1023 atomic regions from SNP 259633 to 260233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,949 DEBUG Processing 822/1135 atomic regions from SNP 246580 to 247180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,085 DEBUG Processing 867/1023 atomic regions from SNP 259933 to 260533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,211 DEBUG Processing 823/1135 atomic regions from SNP 246880 to 247480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,353 DEBUG Processing 868/1023 atomic regions from SNP 260233 to 260833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,472 DEBUG Processing 824/1135 atomic regions from SNP 247180 to 247780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,613 DEBUG Processing 869/1023 atomic regions from SNP 260533 to 261133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,759 DEBUG Processing 825/1135 atomic regions from SNP 247480 to 248080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,865 DEBUG Processing 870/1023 atomic regions from SNP 260833 to 261433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,024 DEBUG Processing 826/1135 atomic regions from SNP 247780 to 248380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,122 DEBUG Processing 871/1023 atomic regions from SNP 261133 to 261733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,288 DEBUG Processing 827/1135 atomic regions from SNP 248080 to 248680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,392 DEBUG Processing 872/1023 atomic regions from SNP 261433 to 262033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,556 DEBUG Processing 828/1135 atomic regions from SNP 248380 to 248980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,673 DEBUG Processing 873/1023 atomic regions from SNP 261733 to 262333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,829 DEBUG Processing 829/1135 atomic regions from SNP 248680 to 249280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,942 DEBUG Processing 874/1023 atomic regions from SNP 262033 to 262633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,103 DEBUG Processing 830/1135 atomic regions from SNP 248980 to 249580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,218 DEBUG Processing 875/1023 atomic regions from SNP 262333 to 262933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,370 DEBUG Processing 831/1135 atomic regions from SNP 249280 to 249880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,507 DEBUG Processing 876/1023 atomic regions from SNP 262633 to 263233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,629 DEBUG Processing 832/1135 atomic regions from SNP 249580 to 250180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,773 DEBUG Processing 877/1023 atomic regions from SNP 262933 to 263533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,888 DEBUG Processing 833/1135 atomic regions from SNP 249880 to 250480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,037 DEBUG Processing 878/1023 atomic regions from SNP 263233 to 263833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,172 DEBUG Processing 834/1135 atomic regions from SNP 250180 to 250780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,308 DEBUG Processing 879/1023 atomic regions from SNP 263533 to 264133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,437 DEBUG Processing 835/1135 atomic regions from SNP 250480 to 251080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,566 DEBUG Processing 880/1023 atomic regions from SNP 263833 to 264433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,654 DEBUG Subchromosome time: 279.8864465620136, subchromosome SNPs: 269601 2025-01-31 09:47:28,654 DEBUG Estimated BADs: [0.72, 4.30, 1.08, 6.45, 1.08, 8.60, 1.08, 6.45, 2.15, 0.72, 0.22, 2.15, 15.06, 2.15, 0.72, 2.15, 4.30, 15.06, 2.15, 15.06, 4.30, 6.45, 1.08, 6.45, 2.15, 6.45, 2.15, 4.30, 2.15, 6.45, 2.15, 0.31, 1.08, 0.31, 2.15, 0.31, 1.08, 0.24] SNP counts: [9126, 3017, 14210, 1016, 15255, 316, 3017, 795, 12627, 9893, 6735, 3864, 831, 33902, 14231, 7997, 6888, 5077, 5820, 4381, 6164, 15746, 11107, 2081, 7849, 4175, 6831, 6450, 7861, 1142, 5889, 4204, 9314, 7481, 6301, 3282, 1831, 2895] SNP IDs counts: [9126, 3017, 14210, 1016, 15255, 316, 3017, 795, 12627, 9893, 6735, 3864, 831, 33902, 14231, 7997, 6888, 5077, 5820, 4381, 6164, 15746, 11107, 2081, 7849, 4175, 6831, 6450, 7861, 1142, 5889, 4204, 9314, 7481, 6301, 3282, 1831, 2895] Critical gap: 694422bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.59Mbp, 10.27Mbp, 19.15Mbp, 19.70Mbp, 28.69Mbp, 28.85Mbp, 30.59Mbp, 31.00Mbp, 38.11Mbp, 44.28Mbp, 48.91Mbp, 51.17Mbp, 51.60Mbp, 71.02Mbp, 79.52Mbp, 84.02Mbp, 87.72Mbp, 90.44Mbp, 94.36Mbp, 96.80Mbp, 100.41Mbp, 108.89Mbp, 115.63Mbp, 116.74Mbp, 121.15Mbp, 123.35Mbp, 127.18Mbp, 130.67Mbp, 135.19Mbp, 135.80Mbp, 139.10Mbp, 141.90Mbp, 147.07Mbp, 151.54Mbp, 155.01Mbp, 157.01Mbp, 158.04Mbp, 160.04Mbp] 2025-01-31 09:47:28,654 DEBUG chr3 time: 279.88712166505866 s 2025-01-31 09:47:28,703 DEBUG Processing 836/1135 atomic regions from SNP 250780 to 251380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,817 DEBUG chr3: Fitting background model for 38 segments 2025-01-31 09:47:28,836 DEBUG Processing 881/1023 atomic regions from SNP 264133 to 264733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,976 DEBUG Processing 837/1135 atomic regions from SNP 251080 to 251680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,103 DEBUG Processing 882/1023 atomic regions from SNP 264433 to 265033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,248 DEBUG Processing 838/1135 atomic regions from SNP 251380 to 251980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,398 DEBUG Processing 883/1023 atomic regions from SNP 264733 to 265333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,524 DEBUG Processing 839/1135 atomic regions from SNP 251680 to 252280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,696 DEBUG Processing 884/1023 atomic regions from SNP 265033 to 265633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,800 DEBUG Processing 840/1135 atomic regions from SNP 251980 to 252580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,978 DEBUG Processing 885/1023 atomic regions from SNP 265333 to 265933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,079 DEBUG Processing 841/1135 atomic regions from SNP 252280 to 252880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,277 DEBUG Processing 886/1023 atomic regions from SNP 265633 to 266233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,363 DEBUG Processing 842/1135 atomic regions from SNP 252580 to 253180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,558 DEBUG Processing 887/1023 atomic regions from SNP 265933 to 266533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,646 DEBUG Processing 843/1135 atomic regions from SNP 252880 to 253480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,839 DEBUG Processing 888/1023 atomic regions from SNP 266233 to 266833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,931 DEBUG Processing 844/1135 atomic regions from SNP 253180 to 253780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,127 DEBUG Processing 889/1023 atomic regions from SNP 266533 to 267133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,203 DEBUG Processing 845/1135 atomic regions from SNP 253480 to 254080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,440 DEBUG Processing 890/1023 atomic regions from SNP 266833 to 267433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,493 DEBUG Processing 846/1135 atomic regions from SNP 253780 to 254380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,759 DEBUG Processing 891/1023 atomic regions from SNP 267133 to 267733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,783 DEBUG Processing 847/1135 atomic regions from SNP 254080 to 254680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,055 DEBUG Processing 892/1023 atomic regions from SNP 267433 to 268033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,063 DEBUG Processing 848/1135 atomic regions from SNP 254380 to 254980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,341 DEBUG Processing 893/1023 atomic regions from SNP 267733 to 268333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,342 DEBUG Processing 849/1135 atomic regions from SNP 254680 to 255280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,619 DEBUG Processing 894/1023 atomic regions from SNP 268033 to 268633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,627 DEBUG Processing 850/1135 atomic regions from SNP 254980 to 255580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,687 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:47:32,689 DEBUG chr6: Signal quantile: 0.993. signal threshold: 15. Best RMSEA: 0.016 2025-01-31 09:47:32,895 DEBUG Processing 895/1023 atomic regions from SNP 268333 to 268933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,911 DEBUG Processing 851/1135 atomic regions from SNP 255280 to 255880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,190 DEBUG Processing 852/1135 atomic regions from SNP 255580 to 256180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,192 DEBUG Processing 896/1023 atomic regions from SNP 268633 to 269233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,471 DEBUG Processing 853/1135 atomic regions from SNP 255880 to 256480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,506 DEBUG Processing 897/1023 atomic regions from SNP 268933 to 269533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,752 DEBUG Processing 854/1135 atomic regions from SNP 256180 to 256780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,812 DEBUG Processing 898/1023 atomic regions from SNP 269233 to 269833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,026 DEBUG Processing 855/1135 atomic regions from SNP 256480 to 257080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,091 DEBUG Processing 899/1023 atomic regions from SNP 269533 to 270133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,302 DEBUG Processing 856/1135 atomic regions from SNP 256780 to 257380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,387 DEBUG Processing 900/1023 atomic regions from SNP 269833 to 270433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,584 DEBUG Processing 857/1135 atomic regions from SNP 257080 to 257680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,671 DEBUG Processing 901/1023 atomic regions from SNP 270133 to 270733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,880 DEBUG Processing 858/1135 atomic regions from SNP 257380 to 257980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,956 DEBUG Processing 902/1023 atomic regions from SNP 270433 to 271033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,161 DEBUG Processing 859/1135 atomic regions from SNP 257680 to 258280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,255 DEBUG Processing 903/1023 atomic regions from SNP 270733 to 271333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,340 DEBUG chr6 total SNP count: 257410 2025-01-31 09:47:35,340 DEBUG chr6 length: 149736546 2025-01-31 09:47:35,340 DEBUG ----------------------------------------- 2025-01-31 09:47:35,340 INFO Processing SNPs in chr6 2025-01-31 09:47:35,445 DEBUG Processing 860/1135 atomic regions from SNP 257980 to 258580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,550 DEBUG Processing 904/1023 atomic regions from SNP 271033 to 271633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,597 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 257410)] 2025-01-31 09:47:35,716 DEBUG Processing 861/1135 atomic regions from SNP 258280 to 258880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,772 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:35,834 DEBUG Processing 905/1023 atomic regions from SNP 271333 to 271933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,005 DEBUG Processing 862/1135 atomic regions from SNP 258580 to 259180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,127 DEBUG Processing 906/1023 atomic regions from SNP 271633 to 272233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,293 DEBUG Processing 863/1135 atomic regions from SNP 258880 to 259480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,419 DEBUG Processing 907/1023 atomic regions from SNP 271933 to 272533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,558 DEBUG Processing 864/1135 atomic regions from SNP 259180 to 259780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,690 DEBUG Processing 908/1023 atomic regions from SNP 272233 to 272833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,825 DEBUG Processing 865/1135 atomic regions from SNP 259480 to 260080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,965 DEBUG Processing 909/1023 atomic regions from SNP 272533 to 273133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,099 DEBUG Processing 866/1135 atomic regions from SNP 259780 to 260380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,247 DEBUG Processing 910/1023 atomic regions from SNP 272833 to 273433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,402 DEBUG Processing 867/1135 atomic regions from SNP 260080 to 260680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,555 DEBUG Processing 911/1023 atomic regions from SNP 273133 to 273733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,702 DEBUG Processing 868/1135 atomic regions from SNP 260380 to 260980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,856 DEBUG Processing 912/1023 atomic regions from SNP 273433 to 274033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,995 DEBUG Processing 869/1135 atomic regions from SNP 260680 to 261280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,153 DEBUG Processing 913/1023 atomic regions from SNP 273733 to 274333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,291 DEBUG Processing 870/1135 atomic regions from SNP 260980 to 261580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,431 DEBUG Processing 914/1023 atomic regions from SNP 274033 to 274633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,570 DEBUG Processing 871/1135 atomic regions from SNP 261280 to 261880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,716 DEBUG Processing 915/1023 atomic regions from SNP 274333 to 274933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,836 DEBUG Processing 872/1135 atomic regions from SNP 261580 to 262180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,003 DEBUG Processing 916/1023 atomic regions from SNP 274633 to 275233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,099 DEBUG Processing 873/1135 atomic regions from SNP 261880 to 262480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,263 DEBUG Processing 917/1023 atomic regions from SNP 274933 to 275533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,367 DEBUG Processing 874/1135 atomic regions from SNP 262180 to 262780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,531 DEBUG Processing 918/1023 atomic regions from SNP 275233 to 275833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,640 DEBUG Processing 875/1135 atomic regions from SNP 262480 to 263080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,804 DEBUG Processing 919/1023 atomic regions from SNP 275533 to 276133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,907 DEBUG Processing 876/1135 atomic regions from SNP 262780 to 263380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,080 DEBUG Processing 920/1023 atomic regions from SNP 275833 to 276433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,176 DEBUG Processing 877/1135 atomic regions from SNP 263080 to 263680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,359 DEBUG Processing 921/1023 atomic regions from SNP 276133 to 276733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,477 DEBUG Processing 878/1135 atomic regions from SNP 263380 to 263980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,622 DEBUG Processing 922/1023 atomic regions from SNP 276433 to 277033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,754 DEBUG Processing 879/1135 atomic regions from SNP 263680 to 264280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,904 DEBUG Processing 923/1023 atomic regions from SNP 276733 to 277333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,031 DEBUG Processing 880/1135 atomic regions from SNP 263980 to 264580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,183 DEBUG Processing 924/1023 atomic regions from SNP 277033 to 277633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,305 DEBUG Processing 881/1135 atomic regions from SNP 264280 to 264880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,442 DEBUG Processing 925/1023 atomic regions from SNP 277333 to 277933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,579 DEBUG Processing 882/1135 atomic regions from SNP 264580 to 265180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,711 DEBUG Processing 926/1023 atomic regions from SNP 277633 to 278233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,861 DEBUG Processing 883/1135 atomic regions from SNP 264880 to 265480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,976 DEBUG Processing 927/1023 atomic regions from SNP 277933 to 278533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,143 DEBUG Processing 884/1135 atomic regions from SNP 265180 to 265780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,241 DEBUG Processing 928/1023 atomic regions from SNP 278233 to 278833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,414 DEBUG Processing 885/1135 atomic regions from SNP 265480 to 266080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,503 DEBUG Processing 929/1023 atomic regions from SNP 278533 to 279133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,680 DEBUG Processing 886/1135 atomic regions from SNP 265780 to 266380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,774 DEBUG Processing 930/1023 atomic regions from SNP 278833 to 279433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,948 DEBUG Processing 887/1135 atomic regions from SNP 266080 to 266680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,039 DEBUG Processing 931/1023 atomic regions from SNP 279133 to 279733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,216 DEBUG Processing 888/1135 atomic regions from SNP 266380 to 266980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,303 DEBUG Processing 932/1023 atomic regions from SNP 279433 to 280033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,491 DEBUG Processing 889/1135 atomic regions from SNP 266680 to 267280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,645 DEBUG Processing 933/1023 atomic regions from SNP 279733 to 280333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,809 DEBUG Processing 890/1135 atomic regions from SNP 266980 to 267580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,904 DEBUG Processing 934/1023 atomic regions from SNP 280033 to 280633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,202 DEBUG Processing 891/1135 atomic regions from SNP 267280 to 267880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,265 DEBUG Processing 935/1023 atomic regions from SNP 280333 to 280933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,525 DEBUG Processing 892/1135 atomic regions from SNP 267580 to 268180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,550 DEBUG Processing 936/1023 atomic regions from SNP 280633 to 281233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,822 DEBUG Processing 937/1023 atomic regions from SNP 280933 to 281533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,823 DEBUG Processing 893/1135 atomic regions from SNP 267880 to 268480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,080 DEBUG Processing 938/1023 atomic regions from SNP 281233 to 281833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,117 DEBUG Processing 894/1135 atomic regions from SNP 268180 to 268780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,347 DEBUG Processing 939/1023 atomic regions from SNP 281533 to 282133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,419 DEBUG Processing 895/1135 atomic regions from SNP 268480 to 269080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,607 DEBUG Processing 940/1023 atomic regions from SNP 281833 to 282433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,713 DEBUG Processing 896/1135 atomic regions from SNP 268780 to 269380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,864 DEBUG Processing 941/1023 atomic regions from SNP 282133 to 282733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,003 DEBUG Processing 897/1135 atomic regions from SNP 269080 to 269680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,122 DEBUG Processing 942/1023 atomic regions from SNP 282433 to 283033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,312 DEBUG Processing 898/1135 atomic regions from SNP 269380 to 269980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,387 DEBUG Processing 943/1023 atomic regions from SNP 282733 to 283333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,600 DEBUG Processing 899/1135 atomic regions from SNP 269680 to 270280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,650 DEBUG Processing 944/1023 atomic regions from SNP 283033 to 283633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,893 DEBUG Processing 900/1135 atomic regions from SNP 269980 to 270580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,917 DEBUG Processing 945/1023 atomic regions from SNP 283333 to 283933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,181 DEBUG Processing 946/1023 atomic regions from SNP 283633 to 284233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,196 DEBUG Processing 901/1135 atomic regions from SNP 270280 to 270880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,443 DEBUG Processing 947/1023 atomic regions from SNP 283933 to 284533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,499 DEBUG Processing 902/1135 atomic regions from SNP 270580 to 271180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,707 DEBUG Processing 948/1023 atomic regions from SNP 284233 to 284833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,792 DEBUG Processing 903/1135 atomic regions from SNP 270880 to 271480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,981 DEBUG Processing 949/1023 atomic regions from SNP 284533 to 285133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,082 DEBUG Processing 904/1135 atomic regions from SNP 271180 to 271780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,247 DEBUG Processing 950/1023 atomic regions from SNP 284833 to 285433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,356 DEBUG Processing 905/1135 atomic regions from SNP 271480 to 272080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,505 DEBUG Processing 951/1023 atomic regions from SNP 285133 to 285733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,642 DEBUG Processing 906/1135 atomic regions from SNP 271780 to 272380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,780 DEBUG Processing 952/1023 atomic regions from SNP 285433 to 286033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,913 DEBUG Processing 907/1135 atomic regions from SNP 272080 to 272680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,058 DEBUG Processing 953/1023 atomic regions from SNP 285733 to 286333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,176 DEBUG Processing 908/1135 atomic regions from SNP 272380 to 272980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,343 DEBUG Processing 954/1023 atomic regions from SNP 286033 to 286633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,444 DEBUG Processing 909/1135 atomic regions from SNP 272680 to 273280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,600 DEBUG Processing 955/1023 atomic regions from SNP 286333 to 286933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,719 DEBUG Processing 910/1135 atomic regions from SNP 272980 to 273580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,867 DEBUG Processing 956/1023 atomic regions from SNP 286633 to 287233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,016 DEBUG Processing 911/1135 atomic regions from SNP 273280 to 273880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,133 DEBUG Processing 957/1023 atomic regions from SNP 286933 to 287533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,287 DEBUG Processing 912/1135 atomic regions from SNP 273580 to 274180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,395 DEBUG Processing 958/1023 atomic regions from SNP 287233 to 287833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,557 DEBUG Processing 913/1135 atomic regions from SNP 273880 to 274480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,664 DEBUG Processing 959/1023 atomic regions from SNP 287533 to 288133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,831 DEBUG Processing 914/1135 atomic regions from SNP 274180 to 274780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,945 DEBUG Processing 960/1023 atomic regions from SNP 287833 to 288433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,096 DEBUG Processing 915/1135 atomic regions from SNP 274480 to 275080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,241 DEBUG Processing 961/1023 atomic regions from SNP 288133 to 288733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,363 DEBUG Processing 916/1135 atomic regions from SNP 274780 to 275380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,525 DEBUG Processing 962/1023 atomic regions from SNP 288433 to 289033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,634 DEBUG Processing 917/1135 atomic regions from SNP 275080 to 275680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,792 DEBUG Processing 963/1023 atomic regions from SNP 288733 to 289333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,905 DEBUG Processing 918/1135 atomic regions from SNP 275380 to 275980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,071 DEBUG Processing 964/1023 atomic regions from SNP 289033 to 289633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,172 DEBUG Processing 919/1135 atomic regions from SNP 275680 to 276280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,336 DEBUG Processing 965/1023 atomic regions from SNP 289333 to 289933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,443 DEBUG Processing 920/1135 atomic regions from SNP 275980 to 276580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,591 DEBUG Processing 966/1023 atomic regions from SNP 289633 to 290233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,711 DEBUG Processing 921/1135 atomic regions from SNP 276280 to 276880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,869 DEBUG Processing 967/1023 atomic regions from SNP 289933 to 290533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,987 DEBUG Processing 922/1135 atomic regions from SNP 276580 to 277180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,165 DEBUG Processing 968/1023 atomic regions from SNP 290233 to 290833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,272 DEBUG Processing 923/1135 atomic regions from SNP 276880 to 277480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,450 DEBUG Processing 969/1023 atomic regions from SNP 290533 to 291133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,554 DEBUG Processing 924/1135 atomic regions from SNP 277180 to 277780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,706 DEBUG Processing 970/1023 atomic regions from SNP 290833 to 291433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,829 DEBUG Processing 925/1135 atomic regions from SNP 277480 to 278080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,966 DEBUG Processing 971/1023 atomic regions from SNP 291133 to 291733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,111 DEBUG Processing 926/1135 atomic regions from SNP 277780 to 278380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,231 DEBUG Processing 972/1023 atomic regions from SNP 291433 to 292033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,396 DEBUG Processing 927/1135 atomic regions from SNP 278080 to 278680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,524 DEBUG Processing 973/1023 atomic regions from SNP 291733 to 292333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,704 DEBUG Processing 928/1135 atomic regions from SNP 278380 to 278980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,857 DEBUG Processing 974/1023 atomic regions from SNP 292033 to 292633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,083 DEBUG Processing 929/1135 atomic regions from SNP 278680 to 279280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,146 DEBUG Processing 975/1023 atomic regions from SNP 292333 to 292933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,381 DEBUG Processing 930/1135 atomic regions from SNP 278980 to 279580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,427 DEBUG Processing 976/1023 atomic regions from SNP 292633 to 293233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,650 DEBUG Processing 931/1135 atomic regions from SNP 279280 to 279880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,717 DEBUG Processing 977/1023 atomic regions from SNP 292933 to 293533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,920 DEBUG Processing 932/1135 atomic regions from SNP 279580 to 280180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,007 DEBUG Processing 978/1023 atomic regions from SNP 293233 to 293833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,211 DEBUG Processing 933/1135 atomic regions from SNP 279880 to 280480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,308 DEBUG Processing 979/1023 atomic regions from SNP 293533 to 294133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,503 DEBUG Processing 934/1135 atomic regions from SNP 280180 to 280780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,599 DEBUG Processing 980/1023 atomic regions from SNP 293833 to 294433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,770 DEBUG Processing 935/1135 atomic regions from SNP 280480 to 281080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,884 DEBUG Processing 981/1023 atomic regions from SNP 294133 to 294733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,031 DEBUG Processing 936/1135 atomic regions from SNP 280780 to 281380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,179 DEBUG Processing 982/1023 atomic regions from SNP 294433 to 295033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,302 DEBUG Processing 937/1135 atomic regions from SNP 281080 to 281680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,444 DEBUG Processing 983/1023 atomic regions from SNP 294733 to 295333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,588 DEBUG Processing 938/1135 atomic regions from SNP 281380 to 281980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,694 DEBUG Processing 984/1023 atomic regions from SNP 295033 to 295633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,858 DEBUG Processing 939/1135 atomic regions from SNP 281680 to 282280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,950 DEBUG Processing 985/1023 atomic regions from SNP 295333 to 295933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,119 DEBUG Processing 940/1135 atomic regions from SNP 281980 to 282580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,202 DEBUG Processing 986/1023 atomic regions from SNP 295633 to 296233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,387 DEBUG Processing 941/1135 atomic regions from SNP 282280 to 282880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,465 DEBUG Processing 987/1023 atomic regions from SNP 295933 to 296533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,643 DEBUG Processing 942/1135 atomic regions from SNP 282580 to 283180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,719 DEBUG Processing 988/1023 atomic regions from SNP 296233 to 296833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,899 DEBUG Processing 943/1135 atomic regions from SNP 282880 to 283480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,978 DEBUG Processing 989/1023 atomic regions from SNP 296533 to 297133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,154 DEBUG Processing 944/1135 atomic regions from SNP 283180 to 283780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,237 DEBUG Processing 990/1023 atomic regions from SNP 296833 to 297433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,418 DEBUG Processing 945/1135 atomic regions from SNP 283480 to 284080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,492 DEBUG Processing 991/1023 atomic regions from SNP 297133 to 297733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,703 DEBUG Processing 946/1135 atomic regions from SNP 283780 to 284380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,748 DEBUG Processing 992/1023 atomic regions from SNP 297433 to 298033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,967 DEBUG Processing 947/1135 atomic regions from SNP 284080 to 284680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,002 DEBUG Processing 993/1023 atomic regions from SNP 297733 to 298333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,248 DEBUG Processing 948/1135 atomic regions from SNP 284380 to 284980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,274 DEBUG Processing 994/1023 atomic regions from SNP 298033 to 298633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,519 DEBUG Processing 949/1135 atomic regions from SNP 284680 to 285280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,568 DEBUG Processing 995/1023 atomic regions from SNP 298333 to 298933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,782 DEBUG Processing 950/1135 atomic regions from SNP 284980 to 285580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,831 DEBUG Processing 996/1023 atomic regions from SNP 298633 to 299233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,047 DEBUG Processing 951/1135 atomic regions from SNP 285280 to 285880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,089 DEBUG Processing 997/1023 atomic regions from SNP 298933 to 299533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,314 DEBUG Processing 952/1135 atomic regions from SNP 285580 to 286180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,346 DEBUG Processing 998/1023 atomic regions from SNP 299233 to 299833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,604 DEBUG Processing 999/1023 atomic regions from SNP 299533 to 300133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,605 DEBUG Processing 953/1135 atomic regions from SNP 285880 to 286480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,870 DEBUG Processing 1000/1023 atomic regions from SNP 299833 to 300433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,902 DEBUG Processing 954/1135 atomic regions from SNP 286180 to 286780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,129 DEBUG Processing 1001/1023 atomic regions from SNP 300133 to 300733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,197 DEBUG Processing 955/1135 atomic regions from SNP 286480 to 287080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,380 DEBUG Processing 1002/1023 atomic regions from SNP 300433 to 301033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,488 DEBUG Processing 956/1135 atomic regions from SNP 286780 to 287380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,633 DEBUG Processing 1003/1023 atomic regions from SNP 300733 to 301333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,783 DEBUG Processing 957/1135 atomic regions from SNP 287080 to 287680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,886 DEBUG Processing 1004/1023 atomic regions from SNP 301033 to 301633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,076 DEBUG Processing 958/1135 atomic regions from SNP 287380 to 287980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,141 DEBUG Processing 1005/1023 atomic regions from SNP 301333 to 301933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,366 DEBUG Processing 959/1135 atomic regions from SNP 287680 to 288280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,399 DEBUG Processing 1006/1023 atomic regions from SNP 301633 to 302233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,629 DEBUG Processing 960/1135 atomic regions from SNP 287980 to 288580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,651 DEBUG Processing 1007/1023 atomic regions from SNP 301933 to 302533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,885 DEBUG Processing 961/1135 atomic regions from SNP 288280 to 288880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,928 DEBUG Processing 1008/1023 atomic regions from SNP 302233 to 302833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,146 DEBUG Processing 962/1135 atomic regions from SNP 288580 to 289180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,204 DEBUG Processing 1009/1023 atomic regions from SNP 302533 to 303133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,406 DEBUG Processing 963/1135 atomic regions from SNP 288880 to 289480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,463 DEBUG Processing 1010/1023 atomic regions from SNP 302833 to 303433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,668 DEBUG Processing 964/1135 atomic regions from SNP 289180 to 289780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,722 DEBUG Processing 1011/1023 atomic regions from SNP 303133 to 303733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,950 DEBUG Processing 965/1135 atomic regions from SNP 289480 to 290080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,999 DEBUG Processing 1012/1023 atomic regions from SNP 303433 to 304033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,245 DEBUG Processing 966/1135 atomic regions from SNP 289780 to 290380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,270 DEBUG Processing 1013/1023 atomic regions from SNP 303733 to 304333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,523 DEBUG Processing 967/1135 atomic regions from SNP 290080 to 290680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,524 DEBUG Processing 1014/1023 atomic regions from SNP 304033 to 304633 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,778 DEBUG Processing 1015/1023 atomic regions from SNP 304333 to 304933 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,785 DEBUG Processing 968/1135 atomic regions from SNP 290380 to 290980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,939 DEBUG Segmenting atomic regions: 2025-01-31 09:48:06,035 DEBUG Processing 1016/1023 atomic regions from SNP 304633 to 305233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,047 DEBUG Processing 969/1135 atomic regions from SNP 290680 to 291280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,049 DEBUG Processing 1/857 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,280 DEBUG Processing 2/857 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,299 DEBUG Processing 1017/1023 atomic regions from SNP 304933 to 305533 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,318 DEBUG Processing 970/1135 atomic regions from SNP 290980 to 291580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,512 DEBUG Processing 3/857 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,566 DEBUG Processing 1018/1023 atomic regions from SNP 305233 to 305833 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,590 DEBUG Processing 971/1135 atomic regions from SNP 291280 to 291880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,739 DEBUG Processing 4/857 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,824 DEBUG Processing 1019/1023 atomic regions from SNP 305533 to 306133 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,880 DEBUG Processing 972/1135 atomic regions from SNP 291580 to 292180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,972 DEBUG Processing 5/857 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,102 DEBUG Processing 1020/1023 atomic regions from SNP 305833 to 306433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,168 DEBUG Processing 973/1135 atomic regions from SNP 291880 to 292480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,202 DEBUG Processing 6/857 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,383 DEBUG Processing 1021/1023 atomic regions from SNP 306133 to 306733 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,431 DEBUG Processing 7/857 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,437 DEBUG Processing 974/1135 atomic regions from SNP 292180 to 292780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,663 DEBUG Processing 1022/1023 atomic regions from SNP 306433 to 307033 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,664 DEBUG Processing 8/857 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,707 DEBUG Processing 975/1135 atomic regions from SNP 292480 to 293080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,895 DEBUG Processing 9/857 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,927 DEBUG Processing 1023/1023 atomic regions from SNP 306733 to 307333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,969 DEBUG Processing 976/1135 atomic regions from SNP 292780 to 293380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,061 DEBUG Unique SNPs positions in subchromosome 1: 307334 2025-01-31 09:48:08,140 DEBUG Processing 10/857 atomic regions from SNP 2709 to 3309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,233 DEBUG Processing 977/1135 atomic regions from SNP 293080 to 293680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,372 DEBUG Processing 11/857 atomic regions from SNP 3009 to 3609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,504 DEBUG Processing 978/1135 atomic regions from SNP 293380 to 293980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,611 DEBUG Processing 12/857 atomic regions from SNP 3309 to 3909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,768 DEBUG Processing 979/1135 atomic regions from SNP 293680 to 294280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,847 DEBUG Processing 13/857 atomic regions from SNP 3609 to 4209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,028 DEBUG Processing 980/1135 atomic regions from SNP 293980 to 294580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,085 DEBUG Processing 14/857 atomic regions from SNP 3909 to 4509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,293 DEBUG Processing 981/1135 atomic regions from SNP 294280 to 294880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,307 DEBUG Processing 15/857 atomic regions from SNP 4209 to 4809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,532 DEBUG Processing 16/857 atomic regions from SNP 4509 to 5109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,558 DEBUG Processing 982/1135 atomic regions from SNP 294580 to 295180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,767 DEBUG Processing 17/857 atomic regions from SNP 4809 to 5409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,846 DEBUG Processing 983/1135 atomic regions from SNP 294880 to 295480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,997 DEBUG Processing 18/857 atomic regions from SNP 5109 to 5709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,126 DEBUG Processing 984/1135 atomic regions from SNP 295180 to 295780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,225 DEBUG Processing 19/857 atomic regions from SNP 5409 to 6009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,391 DEBUG Processing 985/1135 atomic regions from SNP 295480 to 296080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,452 DEBUG Processing 20/857 atomic regions from SNP 5709 to 6309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,666 DEBUG Processing 986/1135 atomic regions from SNP 295780 to 296380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,680 DEBUG Processing 21/857 atomic regions from SNP 6009 to 6609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,909 DEBUG Processing 22/857 atomic regions from SNP 6309 to 6909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,948 DEBUG Processing 987/1135 atomic regions from SNP 296080 to 296680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,129 DEBUG Processing 23/857 atomic regions from SNP 6609 to 7209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,244 DEBUG Processing 988/1135 atomic regions from SNP 296380 to 296980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,353 DEBUG Processing 24/857 atomic regions from SNP 6909 to 7509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,541 DEBUG Processing 989/1135 atomic regions from SNP 296680 to 297280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,579 DEBUG Processing 25/857 atomic regions from SNP 7209 to 7809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,815 DEBUG Processing 26/857 atomic regions from SNP 7509 to 8109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,849 DEBUG Processing 990/1135 atomic regions from SNP 296980 to 297580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,049 DEBUG Processing 27/857 atomic regions from SNP 7809 to 8409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,162 DEBUG Processing 991/1135 atomic regions from SNP 297280 to 297880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,298 DEBUG Processing 28/857 atomic regions from SNP 8109 to 8709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,456 DEBUG Processing 992/1135 atomic regions from SNP 297580 to 298180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,524 DEBUG Processing 29/857 atomic regions from SNP 8409 to 9009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,725 DEBUG Processing 993/1135 atomic regions from SNP 297880 to 298480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,752 DEBUG Processing 30/857 atomic regions from SNP 8709 to 9309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,989 DEBUG Processing 31/857 atomic regions from SNP 9009 to 9609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,991 DEBUG Processing 994/1135 atomic regions from SNP 298180 to 298780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,235 DEBUG Processing 32/857 atomic regions from SNP 9309 to 9909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,276 DEBUG Processing 995/1135 atomic regions from SNP 298480 to 299080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,479 DEBUG Processing 33/857 atomic regions from SNP 9609 to 10209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,575 DEBUG Processing 996/1135 atomic regions from SNP 298780 to 299380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,702 DEBUG Processing 34/857 atomic regions from SNP 9909 to 10509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,880 DEBUG Processing 997/1135 atomic regions from SNP 299080 to 299680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,929 DEBUG Processing 35/857 atomic regions from SNP 10209 to 10809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,144 DEBUG Processing 998/1135 atomic regions from SNP 299380 to 299980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,157 DEBUG Processing 36/857 atomic regions from SNP 10509 to 11109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,384 DEBUG Processing 37/857 atomic regions from SNP 10809 to 11409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,407 DEBUG Processing 999/1135 atomic regions from SNP 299680 to 300280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,601 DEBUG Processing 38/857 atomic regions from SNP 11109 to 11709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,671 DEBUG Processing 1000/1135 atomic regions from SNP 299980 to 300580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,822 DEBUG Processing 39/857 atomic regions from SNP 11409 to 12009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,939 DEBUG Processing 1001/1135 atomic regions from SNP 300280 to 300880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,042 DEBUG Processing 40/857 atomic regions from SNP 11709 to 12309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,198 DEBUG Processing 1002/1135 atomic regions from SNP 300580 to 301180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,262 DEBUG Processing 41/857 atomic regions from SNP 12009 to 12609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,462 DEBUG Processing 1003/1135 atomic regions from SNP 300880 to 301480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,492 DEBUG Processing 42/857 atomic regions from SNP 12309 to 12909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,722 DEBUG Processing 43/857 atomic regions from SNP 12609 to 13209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,730 DEBUG Processing 1004/1135 atomic regions from SNP 301180 to 301780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,948 DEBUG Processing 44/857 atomic regions from SNP 12909 to 13509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,998 DEBUG Processing 1005/1135 atomic regions from SNP 301480 to 302080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,171 DEBUG Processing 45/857 atomic regions from SNP 13209 to 13809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,260 DEBUG Processing 1006/1135 atomic regions from SNP 301780 to 302380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,393 DEBUG Processing 46/857 atomic regions from SNP 13509 to 14109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,522 DEBUG Processing 1007/1135 atomic regions from SNP 302080 to 302680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,618 DEBUG Processing 47/857 atomic regions from SNP 13809 to 14409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,786 DEBUG Processing 1008/1135 atomic regions from SNP 302380 to 302980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,842 DEBUG Processing 48/857 atomic regions from SNP 14109 to 14709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,051 DEBUG Processing 1009/1135 atomic regions from SNP 302680 to 303280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,067 DEBUG Processing 49/857 atomic regions from SNP 14409 to 15009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,303 DEBUG Processing 50/857 atomic regions from SNP 14709 to 15309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,327 DEBUG Processing 1010/1135 atomic regions from SNP 302980 to 303580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,537 DEBUG Processing 51/857 atomic regions from SNP 15009 to 15609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,604 DEBUG Processing 1011/1135 atomic regions from SNP 303280 to 303880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,767 DEBUG Processing 52/857 atomic regions from SNP 15309 to 15909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,877 DEBUG Processing 1012/1135 atomic regions from SNP 303580 to 304180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,989 DEBUG Processing 53/857 atomic regions from SNP 15609 to 16209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,140 DEBUG Processing 1013/1135 atomic regions from SNP 303880 to 304480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,209 DEBUG Processing 54/857 atomic regions from SNP 15909 to 16509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,410 DEBUG Processing 1014/1135 atomic regions from SNP 304180 to 304780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,442 DEBUG Processing 55/857 atomic regions from SNP 16209 to 16809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,678 DEBUG Processing 56/857 atomic regions from SNP 16509 to 17109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,687 DEBUG Processing 1015/1135 atomic regions from SNP 304480 to 305080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,908 DEBUG Processing 57/857 atomic regions from SNP 16809 to 17409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,960 DEBUG Processing 1016/1135 atomic regions from SNP 304780 to 305380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,133 DEBUG Processing 58/857 atomic regions from SNP 17109 to 17709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,237 DEBUG Processing 1017/1135 atomic regions from SNP 305080 to 305680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,373 DEBUG Processing 59/857 atomic regions from SNP 17409 to 18009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,511 DEBUG Processing 1018/1135 atomic regions from SNP 305380 to 305980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,596 DEBUG Processing 60/857 atomic regions from SNP 17709 to 18309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,779 DEBUG Processing 1019/1135 atomic regions from SNP 305680 to 306280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,822 DEBUG Processing 61/857 atomic regions from SNP 18009 to 18609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,050 DEBUG Processing 1020/1135 atomic regions from SNP 305980 to 306580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,058 DEBUG Processing 62/857 atomic regions from SNP 18309 to 18909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,291 DEBUG Processing 63/857 atomic regions from SNP 18609 to 19209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,323 DEBUG Processing 1021/1135 atomic regions from SNP 306280 to 306880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,518 DEBUG Processing 64/857 atomic regions from SNP 18909 to 19509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,599 DEBUG Processing 1022/1135 atomic regions from SNP 306580 to 307180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,736 DEBUG Processing 65/857 atomic regions from SNP 19209 to 19809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,890 DEBUG Processing 1023/1135 atomic regions from SNP 306880 to 307480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,950 DEBUG Processing 66/857 atomic regions from SNP 19509 to 20109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,159 DEBUG Processing 1024/1135 atomic regions from SNP 307180 to 307780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,170 DEBUG Processing 67/857 atomic regions from SNP 19809 to 20409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,399 DEBUG Processing 68/857 atomic regions from SNP 20109 to 20709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,427 DEBUG Processing 1025/1135 atomic regions from SNP 307480 to 308080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,624 DEBUG Processing 69/857 atomic regions from SNP 20409 to 21009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,698 DEBUG Processing 1026/1135 atomic regions from SNP 307780 to 308380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,855 DEBUG Processing 70/857 atomic regions from SNP 20709 to 21309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,971 DEBUG Processing 1027/1135 atomic regions from SNP 308080 to 308680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,088 DEBUG Processing 71/857 atomic regions from SNP 21009 to 21609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,238 DEBUG Processing 1028/1135 atomic regions from SNP 308380 to 308980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,310 DEBUG Processing 72/857 atomic regions from SNP 21309 to 21909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,508 DEBUG Processing 1029/1135 atomic regions from SNP 308680 to 309280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,536 DEBUG Processing 73/857 atomic regions from SNP 21609 to 22209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,761 DEBUG Processing 74/857 atomic regions from SNP 21909 to 22509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,780 DEBUG Processing 1030/1135 atomic regions from SNP 308980 to 309580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,981 DEBUG Processing 75/857 atomic regions from SNP 22209 to 22809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,063 DEBUG Processing 1031/1135 atomic regions from SNP 309280 to 309880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,200 DEBUG Processing 76/857 atomic regions from SNP 22509 to 23109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,346 DEBUG Processing 1032/1135 atomic regions from SNP 309580 to 310180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,418 DEBUG Processing 77/857 atomic regions from SNP 22809 to 23409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,628 DEBUG Processing 1033/1135 atomic regions from SNP 309880 to 310480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,641 DEBUG Processing 78/857 atomic regions from SNP 23109 to 23709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,863 DEBUG Processing 79/857 atomic regions from SNP 23409 to 24009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,890 DEBUG Processing 1034/1135 atomic regions from SNP 310180 to 310780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,086 DEBUG Processing 80/857 atomic regions from SNP 23709 to 24309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,159 DEBUG Processing 1035/1135 atomic regions from SNP 310480 to 311080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,301 DEBUG Processing 81/857 atomic regions from SNP 24009 to 24609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,428 DEBUG Processing 1036/1135 atomic regions from SNP 310780 to 311380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,527 DEBUG Processing 82/857 atomic regions from SNP 24309 to 24909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,702 DEBUG Processing 1037/1135 atomic regions from SNP 311080 to 311680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,751 DEBUG Processing 83/857 atomic regions from SNP 24609 to 25209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,971 DEBUG Processing 1038/1135 atomic regions from SNP 311380 to 311980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,006 DEBUG Processing 84/857 atomic regions from SNP 24909 to 25509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,146 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:48:25,256 DEBUG Processing 85/857 atomic regions from SNP 25209 to 25809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,258 DEBUG Processing 1039/1135 atomic regions from SNP 311680 to 312280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,495 DEBUG Processing 86/857 atomic regions from SNP 25509 to 26109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,576 DEBUG Processing 1040/1135 atomic regions from SNP 311980 to 312580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,734 DEBUG Processing 87/857 atomic regions from SNP 25809 to 26409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,894 DEBUG Processing 1041/1135 atomic regions from SNP 312280 to 312880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,956 DEBUG Processing 88/857 atomic regions from SNP 26109 to 26709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,182 DEBUG Processing 1042/1135 atomic regions from SNP 312580 to 313180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,182 DEBUG Processing 89/857 atomic regions from SNP 26409 to 27009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,423 DEBUG Processing 90/857 atomic regions from SNP 26709 to 27309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,478 DEBUG Processing 1043/1135 atomic regions from SNP 312880 to 313480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,657 DEBUG Processing 91/857 atomic regions from SNP 27009 to 27609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,779 DEBUG Processing 1044/1135 atomic regions from SNP 313180 to 313780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,882 DEBUG Processing 92/857 atomic regions from SNP 27309 to 27909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,077 DEBUG Processing 1045/1135 atomic regions from SNP 313480 to 314080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,106 DEBUG Processing 93/857 atomic regions from SNP 27609 to 28209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,334 DEBUG Processing 94/857 atomic regions from SNP 27909 to 28509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,376 DEBUG Processing 1046/1135 atomic regions from SNP 313780 to 314380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,559 DEBUG Processing 95/857 atomic regions from SNP 28209 to 28809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,679 DEBUG Processing 1047/1135 atomic regions from SNP 314080 to 314680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,785 DEBUG Processing 96/857 atomic regions from SNP 28509 to 29109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,990 DEBUG Processing 1048/1135 atomic regions from SNP 314380 to 314980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,016 DEBUG Processing 97/857 atomic regions from SNP 28809 to 29409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,251 DEBUG Processing 98/857 atomic regions from SNP 29109 to 29709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,308 DEBUG Processing 1049/1135 atomic regions from SNP 314680 to 315280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,480 DEBUG Processing 99/857 atomic regions from SNP 29409 to 30009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,615 DEBUG Processing 1050/1135 atomic regions from SNP 314980 to 315580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,719 DEBUG Processing 100/857 atomic regions from SNP 29709 to 30309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,921 DEBUG Processing 1051/1135 atomic regions from SNP 315280 to 315880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,948 DEBUG Processing 101/857 atomic regions from SNP 30009 to 30609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,183 DEBUG Processing 102/857 atomic regions from SNP 30309 to 30909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,197 DEBUG Processing 1052/1135 atomic regions from SNP 315580 to 316180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,421 DEBUG Processing 103/857 atomic regions from SNP 30609 to 31209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,484 DEBUG Processing 1053/1135 atomic regions from SNP 315880 to 316480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,657 DEBUG Processing 104/857 atomic regions from SNP 30909 to 31509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,784 DEBUG Processing 1054/1135 atomic regions from SNP 316180 to 316780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,890 DEBUG Processing 105/857 atomic regions from SNP 31209 to 31809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,063 DEBUG Processing 1055/1135 atomic regions from SNP 316480 to 317080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,128 DEBUG Processing 106/857 atomic regions from SNP 31509 to 32109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,354 DEBUG Processing 1056/1135 atomic regions from SNP 316780 to 317380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,367 DEBUG Processing 107/857 atomic regions from SNP 31809 to 32409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,605 DEBUG Processing 108/857 atomic regions from SNP 32109 to 32709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,650 DEBUG Processing 1057/1135 atomic regions from SNP 317080 to 317680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,837 DEBUG Processing 109/857 atomic regions from SNP 32409 to 33009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,948 DEBUG Processing 1058/1135 atomic regions from SNP 317380 to 317980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,070 DEBUG Processing 110/857 atomic regions from SNP 32709 to 33309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,216 DEBUG Processing 1059/1135 atomic regions from SNP 317680 to 318280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,300 DEBUG Processing 111/857 atomic regions from SNP 33009 to 33609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,491 DEBUG Processing 1060/1135 atomic regions from SNP 317980 to 318580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,537 DEBUG Processing 112/857 atomic regions from SNP 33309 to 33909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,774 DEBUG Processing 1061/1135 atomic regions from SNP 318280 to 318880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,777 DEBUG Processing 113/857 atomic regions from SNP 33609 to 34209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,014 DEBUG Processing 114/857 atomic regions from SNP 33909 to 34509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,067 DEBUG Processing 1062/1135 atomic regions from SNP 318580 to 319180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,242 DEBUG Processing 115/857 atomic regions from SNP 34209 to 34809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,374 DEBUG Processing 1063/1135 atomic regions from SNP 318880 to 319480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,467 DEBUG Processing 116/857 atomic regions from SNP 34509 to 35109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,661 DEBUG Processing 1064/1135 atomic regions from SNP 319180 to 319780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,701 DEBUG Processing 117/857 atomic regions from SNP 34809 to 35409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,938 DEBUG Processing 118/857 atomic regions from SNP 35109 to 35709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,947 DEBUG Processing 1065/1135 atomic regions from SNP 319480 to 320080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,176 DEBUG Processing 119/857 atomic regions from SNP 35409 to 36009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,228 DEBUG Processing 1066/1135 atomic regions from SNP 319780 to 320380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,417 DEBUG Processing 120/857 atomic regions from SNP 35709 to 36309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,507 DEBUG Processing 1067/1135 atomic regions from SNP 320080 to 320680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,648 DEBUG Processing 121/857 atomic regions from SNP 36009 to 36609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,781 DEBUG Processing 1068/1135 atomic regions from SNP 320380 to 320980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,875 DEBUG Processing 122/857 atomic regions from SNP 36309 to 36909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,048 DEBUG Processing 1069/1135 atomic regions from SNP 320680 to 321280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,103 DEBUG Processing 123/857 atomic regions from SNP 36609 to 37209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,314 DEBUG Processing 1070/1135 atomic regions from SNP 320980 to 321580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,333 DEBUG Processing 124/857 atomic regions from SNP 36909 to 37509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,561 DEBUG Processing 125/857 atomic regions from SNP 37209 to 37809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,608 DEBUG Processing 1071/1135 atomic regions from SNP 321280 to 321880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,789 DEBUG Processing 126/857 atomic regions from SNP 37509 to 38109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,922 DEBUG Processing 1072/1135 atomic regions from SNP 321580 to 322180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,015 DEBUG Processing 127/857 atomic regions from SNP 37809 to 38409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,200 DEBUG Processing 1073/1135 atomic regions from SNP 321880 to 322480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,247 DEBUG Processing 128/857 atomic regions from SNP 38109 to 38709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,475 DEBUG Processing 129/857 atomic regions from SNP 38409 to 39009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,488 DEBUG Processing 1074/1135 atomic regions from SNP 322180 to 322780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,707 DEBUG Processing 130/857 atomic regions from SNP 38709 to 39309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,794 DEBUG Processing 1075/1135 atomic regions from SNP 322480 to 323080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,933 DEBUG Processing 131/857 atomic regions from SNP 39009 to 39609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,098 DEBUG Processing 1076/1135 atomic regions from SNP 322780 to 323380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,164 DEBUG Processing 132/857 atomic regions from SNP 39309 to 39909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,395 DEBUG Processing 1077/1135 atomic regions from SNP 323080 to 323680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,396 DEBUG Processing 133/857 atomic regions from SNP 39609 to 40209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,647 DEBUG Processing 134/857 atomic regions from SNP 39909 to 40509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,688 DEBUG Processing 1078/1135 atomic regions from SNP 323380 to 323980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,877 DEBUG Processing 135/857 atomic regions from SNP 40209 to 40809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,963 DEBUG Processing 1079/1135 atomic regions from SNP 323680 to 324280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,103 DEBUG Processing 136/857 atomic regions from SNP 40509 to 41109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,234 DEBUG Processing 1080/1135 atomic regions from SNP 323980 to 324580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,328 DEBUG Processing 137/857 atomic regions from SNP 40809 to 41409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,507 DEBUG Processing 1081/1135 atomic regions from SNP 324280 to 324880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,566 DEBUG Processing 138/857 atomic regions from SNP 41109 to 41709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,781 DEBUG Processing 1082/1135 atomic regions from SNP 324580 to 325180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,802 DEBUG Processing 139/857 atomic regions from SNP 41409 to 42009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,043 DEBUG Processing 140/857 atomic regions from SNP 41709 to 42309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,064 DEBUG Processing 1083/1135 atomic regions from SNP 324880 to 325480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,278 DEBUG Processing 141/857 atomic regions from SNP 42009 to 42609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,339 DEBUG Processing 1084/1135 atomic regions from SNP 325180 to 325780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,395 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:48:38,509 DEBUG Processing 142/857 atomic regions from SNP 42309 to 42909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,618 DEBUG Processing 1085/1135 atomic regions from SNP 325480 to 326080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,745 DEBUG Processing 143/857 atomic regions from SNP 42609 to 43209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,912 DEBUG Processing 1086/1135 atomic regions from SNP 325780 to 326380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,971 DEBUG Processing 144/857 atomic regions from SNP 42909 to 43509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,181 DEBUG Processing 1087/1135 atomic regions from SNP 326080 to 326680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,202 DEBUG Processing 145/857 atomic regions from SNP 43209 to 43809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,450 DEBUG Processing 1088/1135 atomic regions from SNP 326380 to 326980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,453 DEBUG Processing 146/857 atomic regions from SNP 43509 to 44109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,691 DEBUG Processing 147/857 atomic regions from SNP 43809 to 44409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,721 DEBUG Processing 1089/1135 atomic regions from SNP 326680 to 327280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,933 DEBUG Processing 148/857 atomic regions from SNP 44109 to 44709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,997 DEBUG Processing 1090/1135 atomic regions from SNP 326980 to 327580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,176 DEBUG Processing 149/857 atomic regions from SNP 44409 to 45009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,271 DEBUG Processing 1091/1135 atomic regions from SNP 327280 to 327880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,421 DEBUG Processing 150/857 atomic regions from SNP 44709 to 45309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,536 DEBUG Processing 1092/1135 atomic regions from SNP 327580 to 328180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,669 DEBUG Processing 151/857 atomic regions from SNP 45009 to 45609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,811 DEBUG Processing 1093/1135 atomic regions from SNP 327880 to 328480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,928 DEBUG Processing 152/857 atomic regions from SNP 45309 to 45909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,083 DEBUG Processing 1094/1135 atomic regions from SNP 328180 to 328780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,181 DEBUG Processing 153/857 atomic regions from SNP 45609 to 46209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,355 DEBUG Processing 1095/1135 atomic regions from SNP 328480 to 329080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,444 DEBUG Processing 154/857 atomic regions from SNP 45909 to 46509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,632 DEBUG Processing 1096/1135 atomic regions from SNP 328780 to 329380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,720 DEBUG Processing 155/857 atomic regions from SNP 46209 to 46809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,918 DEBUG Processing 1097/1135 atomic regions from SNP 329080 to 329680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,980 DEBUG Processing 156/857 atomic regions from SNP 46509 to 47109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,190 DEBUG Processing 1098/1135 atomic regions from SNP 329380 to 329980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,244 DEBUG Processing 157/857 atomic regions from SNP 46809 to 47409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,457 DEBUG Processing 1099/1135 atomic regions from SNP 329680 to 330280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,501 DEBUG Processing 158/857 atomic regions from SNP 47109 to 47709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,729 DEBUG Processing 1100/1135 atomic regions from SNP 329980 to 330580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,740 DEBUG Processing 159/857 atomic regions from SNP 47409 to 48009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,983 DEBUG Processing 160/857 atomic regions from SNP 47709 to 48309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,005 DEBUG Processing 1101/1135 atomic regions from SNP 330280 to 330880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,219 DEBUG Processing 161/857 atomic regions from SNP 48009 to 48609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,292 DEBUG Processing 1102/1135 atomic regions from SNP 330580 to 331180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,472 DEBUG Processing 162/857 atomic regions from SNP 48309 to 48909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,581 DEBUG Processing 1103/1135 atomic regions from SNP 330880 to 331480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,661 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:48:43,723 DEBUG Processing 163/857 atomic regions from SNP 48609 to 49209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,874 DEBUG Processing 1104/1135 atomic regions from SNP 331180 to 331780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,955 DEBUG Processing 164/857 atomic regions from SNP 48909 to 49509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,153 DEBUG Processing 1105/1135 atomic regions from SNP 331480 to 332080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,213 DEBUG Processing 165/857 atomic regions from SNP 49209 to 49809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,421 DEBUG Processing 1106/1135 atomic regions from SNP 331780 to 332380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,453 DEBUG Processing 166/857 atomic regions from SNP 49509 to 50109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,683 DEBUG Processing 167/857 atomic regions from SNP 49809 to 50409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,684 DEBUG Processing 1107/1135 atomic regions from SNP 332080 to 332680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,918 DEBUG Processing 168/857 atomic regions from SNP 50109 to 50709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,960 DEBUG Processing 1108/1135 atomic regions from SNP 332380 to 332980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,160 DEBUG Processing 169/857 atomic regions from SNP 50409 to 51009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,261 DEBUG Processing 1109/1135 atomic regions from SNP 332680 to 333280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,408 DEBUG Processing 170/857 atomic regions from SNP 50709 to 51309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,572 DEBUG Processing 1110/1135 atomic regions from SNP 332980 to 333580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,662 DEBUG Processing 171/857 atomic regions from SNP 51009 to 51609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,880 DEBUG Processing 1111/1135 atomic regions from SNP 333280 to 333880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,901 DEBUG Processing 172/857 atomic regions from SNP 51309 to 51909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,141 DEBUG Processing 173/857 atomic regions from SNP 51609 to 52209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,191 DEBUG Processing 1112/1135 atomic regions from SNP 333580 to 334180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,372 DEBUG Processing 174/857 atomic regions from SNP 51909 to 52509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,491 DEBUG Processing 1113/1135 atomic regions from SNP 333880 to 334480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,595 DEBUG Processing 175/857 atomic regions from SNP 52209 to 52809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,787 DEBUG Processing 1114/1135 atomic regions from SNP 334180 to 334780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,820 DEBUG Processing 176/857 atomic regions from SNP 52509 to 53109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,044 DEBUG Processing 177/857 atomic regions from SNP 52809 to 53409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,074 DEBUG Processing 1115/1135 atomic regions from SNP 334480 to 335080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,211 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:48:47,213 DEBUG chr7: Signal quantile: 0.988. signal threshold: 15. Best RMSEA: 0.012 2025-01-31 09:48:47,263 DEBUG Processing 178/857 atomic regions from SNP 53109 to 53709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,369 DEBUG Processing 1116/1135 atomic regions from SNP 334780 to 335380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,494 DEBUG Processing 179/857 atomic regions from SNP 53409 to 54009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,675 DEBUG Processing 1117/1135 atomic regions from SNP 335080 to 335680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,726 DEBUG Processing 180/857 atomic regions from SNP 53709 to 54309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,965 DEBUG Processing 181/857 atomic regions from SNP 54009 to 54609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,969 DEBUG Processing 1118/1135 atomic regions from SNP 335380 to 335980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,197 DEBUG Processing 182/857 atomic regions from SNP 54309 to 54909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,237 DEBUG Processing 1119/1135 atomic regions from SNP 335680 to 336280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,445 DEBUG Processing 183/857 atomic regions from SNP 54609 to 55209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,509 DEBUG Processing 1120/1135 atomic regions from SNP 335980 to 336580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,681 DEBUG Processing 184/857 atomic regions from SNP 54909 to 55509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,806 DEBUG Processing 1121/1135 atomic regions from SNP 336280 to 336880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,943 DEBUG Processing 185/857 atomic regions from SNP 55209 to 55809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,079 DEBUG Processing 1122/1135 atomic regions from SNP 336580 to 337180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,198 DEBUG Processing 186/857 atomic regions from SNP 55509 to 56109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,364 DEBUG Processing 1123/1135 atomic regions from SNP 336880 to 337480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,447 DEBUG Processing 187/857 atomic regions from SNP 55809 to 56409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,646 DEBUG Processing 1124/1135 atomic regions from SNP 337180 to 337780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,707 DEBUG Processing 188/857 atomic regions from SNP 56109 to 56709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,737 DEBUG chr7 total SNP count: 232766 2025-01-31 09:48:49,738 DEBUG chr7 length: 145441459 2025-01-31 09:48:49,738 DEBUG ----------------------------------------- 2025-01-31 09:48:49,738 INFO Processing SNPs in chr7 2025-01-31 09:48:49,921 DEBUG Processing 1125/1135 atomic regions from SNP 337480 to 338080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,937 DEBUG Processing 189/857 atomic regions from SNP 56409 to 57009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,098 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 20918), (20918, 20935), (20935, 232766)] 2025-01-31 09:48:50,173 DEBUG Processing 190/857 atomic regions from SNP 56709 to 57309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,205 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:50,211 DEBUG Processing 1126/1135 atomic regions from SNP 337780 to 338380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,401 DEBUG Processing 191/857 atomic regions from SNP 57009 to 57609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,503 DEBUG Processing 1127/1135 atomic regions from SNP 338080 to 338680 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,627 DEBUG Processing 192/857 atomic regions from SNP 57309 to 57909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,766 DEBUG Processing 1128/1135 atomic regions from SNP 338380 to 338980 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,854 DEBUG Processing 193/857 atomic regions from SNP 57609 to 58209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,926 DEBUG Subchromosome time: 356.9701974519994, subchromosome SNPs: 307334 2025-01-31 09:48:50,929 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:51,025 DEBUG Processing 1129/1135 atomic regions from SNP 338680 to 339280 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,082 DEBUG Processing 194/857 atomic regions from SNP 57909 to 58509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,293 DEBUG Processing 1130/1135 atomic regions from SNP 338980 to 339580 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,319 DEBUG Processing 195/857 atomic regions from SNP 58209 to 58809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,553 DEBUG Processing 196/857 atomic regions from SNP 58509 to 59109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,564 DEBUG Processing 1131/1135 atomic regions from SNP 339280 to 339880 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,790 DEBUG Processing 197/857 atomic regions from SNP 58809 to 59409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,847 DEBUG Segmenting atomic regions: 2025-01-31 09:48:51,858 DEBUG Processing 1132/1135 atomic regions from SNP 339580 to 340180 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,981 DEBUG Processing 1/25 atomic regions from SNP 0 to 603 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:52,023 DEBUG Processing 198/857 atomic regions from SNP 59109 to 59709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,160 DEBUG Processing 1133/1135 atomic regions from SNP 339880 to 340480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,232 DEBUG Processing 2/25 atomic regions from SNP 303 to 906 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:52,255 DEBUG Processing 199/857 atomic regions from SNP 59409 to 60009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,444 DEBUG Processing 1134/1135 atomic regions from SNP 340180 to 340780 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,483 DEBUG Processing 3/25 atomic regions from SNP 606 to 1209 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:52,483 DEBUG Processing 200/857 atomic regions from SNP 59709 to 60309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,638 DEBUG Segmenting atomic regions: 2025-01-31 09:48:52,723 DEBUG Processing 201/857 atomic regions from SNP 60009 to 60609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,734 DEBUG Processing 1135/1135 atomic regions from SNP 340480 to 341080 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,737 DEBUG Processing 1/68 atomic regions from SNP 0 to 604 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:52,752 DEBUG Processing 4/25 atomic regions from SNP 909 to 1512 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:52,888 DEBUG Unique SNPs positions in subchromosome 1: 341081 2025-01-31 09:48:52,977 DEBUG Processing 202/857 atomic regions from SNP 60309 to 60909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,981 DEBUG Processing 2/68 atomic regions from SNP 304 to 908 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:53,047 DEBUG Processing 5/25 atomic regions from SNP 1212 to 1815 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:53,219 DEBUG Processing 3/68 atomic regions from SNP 608 to 1212 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:53,251 DEBUG Processing 203/857 atomic regions from SNP 60609 to 61209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,312 DEBUG Processing 6/25 atomic regions from SNP 1515 to 2118 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:53,476 DEBUG Processing 4/68 atomic regions from SNP 912 to 1516 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:53,493 DEBUG Processing 204/857 atomic regions from SNP 60909 to 61509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,565 DEBUG Processing 7/25 atomic regions from SNP 1818 to 2420 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:53,714 DEBUG Processing 5/68 atomic regions from SNP 1216 to 1820 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:53,729 DEBUG Processing 205/857 atomic regions from SNP 61209 to 61809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,825 DEBUG Processing 8/25 atomic regions from SNP 2120 to 2722 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:53,867 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:48:53,869 DEBUG chr10: Signal quantile: 0.990. signal threshold: 13. Best RMSEA: 0.016 2025-01-31 09:48:53,959 DEBUG Processing 6/68 atomic regions from SNP 1520 to 2124 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:53,972 DEBUG Processing 206/857 atomic regions from SNP 61509 to 62109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,080 DEBUG Processing 9/25 atomic regions from SNP 2422 to 3024 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:54,196 DEBUG Processing 7/68 atomic regions from SNP 1824 to 2428 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:54,243 DEBUG Processing 207/857 atomic regions from SNP 61809 to 62409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,335 DEBUG Processing 10/25 atomic regions from SNP 2724 to 3326 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:54,447 DEBUG Processing 8/68 atomic regions from SNP 2128 to 2732 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:54,500 DEBUG Processing 208/857 atomic regions from SNP 62109 to 62709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,584 DEBUG Processing 11/25 atomic regions from SNP 3026 to 3628 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:54,698 DEBUG Processing 9/68 atomic regions from SNP 2432 to 3036 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:54,753 DEBUG Processing 209/857 atomic regions from SNP 62409 to 63009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,837 DEBUG Processing 12/25 atomic regions from SNP 3328 to 3930 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:54,959 DEBUG Processing 10/68 atomic regions from SNP 2736 to 3340 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:55,021 DEBUG Processing 210/857 atomic regions from SNP 62709 to 63309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,104 DEBUG Processing 13/25 atomic regions from SNP 3630 to 4232 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:55,221 DEBUG Processing 11/68 atomic regions from SNP 3040 to 3644 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:55,269 DEBUG Processing 211/857 atomic regions from SNP 63009 to 63609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,396 DEBUG Processing 14/25 atomic regions from SNP 3932 to 4534 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:55,448 DEBUG Processing 12/68 atomic regions from SNP 3344 to 3948 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:55,507 DEBUG Processing 212/857 atomic regions from SNP 63309 to 63909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,675 DEBUG Processing 13/68 atomic regions from SNP 3648 to 4252 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:55,690 DEBUG Processing 15/25 atomic regions from SNP 4234 to 4836 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:55,760 DEBUG Processing 213/857 atomic regions from SNP 63609 to 64209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,896 DEBUG Processing 14/68 atomic regions from SNP 3952 to 4555 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:55,977 DEBUG Processing 16/25 atomic regions from SNP 4536 to 5138 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:56,005 DEBUG Processing 214/857 atomic regions from SNP 63909 to 64509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,112 DEBUG Processing 15/68 atomic regions from SNP 4255 to 4858 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:56,138 DEBUG chr10 total SNP count: 224748 2025-01-31 09:48:56,138 DEBUG chr10 length: 130694993 2025-01-31 09:48:56,138 DEBUG ----------------------------------------- 2025-01-31 09:48:56,138 INFO Processing SNPs in chr10 2025-01-31 09:48:56,236 DEBUG Processing 215/857 atomic regions from SNP 64209 to 64809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,262 DEBUG Processing 17/25 atomic regions from SNP 4838 to 5440 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:56,344 DEBUG Processing 16/68 atomic regions from SNP 4558 to 5161 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:56,360 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 224748)] 2025-01-31 09:48:56,465 DEBUG Processing 216/857 atomic regions from SNP 64509 to 65109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,511 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:56,540 DEBUG Processing 18/25 atomic regions from SNP 5140 to 5742 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:56,586 DEBUG Processing 17/68 atomic regions from SNP 4861 to 5464 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:56,688 DEBUG Processing 217/857 atomic regions from SNP 64809 to 65409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,820 DEBUG Processing 18/68 atomic regions from SNP 5164 to 5767 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:56,825 DEBUG Processing 19/25 atomic regions from SNP 5442 to 6044 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:56,906 DEBUG Processing 218/857 atomic regions from SNP 65109 to 65709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,052 DEBUG Processing 19/68 atomic regions from SNP 5467 to 6070 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:57,112 DEBUG Processing 20/25 atomic regions from SNP 5744 to 6346 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:57,137 DEBUG Processing 219/857 atomic regions from SNP 65409 to 66009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,289 DEBUG Processing 20/68 atomic regions from SNP 5770 to 6373 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:57,368 DEBUG Processing 220/857 atomic regions from SNP 65709 to 66309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,401 DEBUG Processing 21/25 atomic regions from SNP 6046 to 6648 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:57,508 DEBUG Processing 21/68 atomic regions from SNP 6073 to 6676 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:57,605 DEBUG Processing 221/857 atomic regions from SNP 66009 to 66609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,691 DEBUG Processing 22/25 atomic regions from SNP 6348 to 6950 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:57,729 DEBUG Processing 22/68 atomic regions from SNP 6376 to 6979 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:57,833 DEBUG Processing 222/857 atomic regions from SNP 66309 to 66909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,943 DEBUG Processing 23/68 atomic regions from SNP 6679 to 7282 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:57,974 DEBUG Processing 23/25 atomic regions from SNP 6650 to 7252 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:58,050 DEBUG Processing 223/857 atomic regions from SNP 66609 to 67209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,156 DEBUG Processing 24/68 atomic regions from SNP 6982 to 7585 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:58,266 DEBUG Processing 24/25 atomic regions from SNP 6952 to 7554 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:58,272 DEBUG Processing 224/857 atomic regions from SNP 66909 to 67509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,371 DEBUG Processing 25/68 atomic regions from SNP 7285 to 7888 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:58,496 DEBUG Processing 225/857 atomic regions from SNP 67209 to 67809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,548 DEBUG Processing 25/25 atomic regions from SNP 7254 to 7856 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:58,581 DEBUG Processing 26/68 atomic regions from SNP 7588 to 8191 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:58,680 DEBUG Unique SNPs positions in subchromosome 2: 7857 2025-01-31 09:48:58,690 DEBUG Subchromosome time: 7.761702868971042, subchromosome SNPs: 7857 2025-01-31 09:48:58,691 DEBUG Estimated BADs: [2.00, 0.50, 2.00, 0.67, 4.01, 2.00, 6.01, 4.01, 0.50, 4.01, 0.40, 2.00, 0.33, 1.00, 0.40, 1.00, 4.01, 2.00, 1.00, 8.01, 0.33, 2.00, 6.01, 2.00, 0.33, 2.00, 1.00, 2.00, 4.01, 0.40, 2.00, 4.01, 2.00, 1.00, 4.01, 2.00, 4.01, 2.00, 2.00, 8.01] SNP counts: [7921, 2718, 11434, 4386, 1623, 10306, 14971, 6573, 1189, 4302, 7705, 3647, 3549, 9605, 5089, 23904, 6841, 13965, 5993, 1203, 7170, 1568, 2972, 4510, 9584, 12666, 14334, 4390, 7950, 1777, 6000, 9385, 7378, 25812, 14122, 8769, 8926, 13097, 3440, 4417] SNP IDs counts: [7921, 2718, 11434, 4386, 1623, 10306, 14971, 6573, 1189, 4302, 7705, 3647, 3549, 9605, 5089, 23904, 6841, 13965, 5993, 1203, 7170, 1568, 2972, 4510, 9584, 12666, 14334, 4390, 7950, 1777, 6000, 9385, 7378, 25812, 14122, 8769, 8926, 13097, 3440, 4417] Critical gap: 726256bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.37Mbp, 8.99Mbp, 15.46Mbp, 18.02Mbp, 18.90Mbp, 24.91Mbp, 32.82Mbp, 36.27Mbp, 37.02Mbp, 39.38Mbp, 43.85Mbp, 45.81Mbp, 47.97Mbp, 53.20Mbp, 56.38Mbp, 69.78Mbp, 73.39Mbp, 80.95Mbp, 84.65Mbp, 85.30Mbp, 89.74Mbp, 90.84Mbp, 92.38Mbp, 94.78Mbp, 101.07Mbp, 107.97Mbp, 116.25Mbp, 118.65Mbp, 122.92Mbp, 123.97Mbp, 127.25Mbp, 132.24Mbp, 136.30Mbp, 150.77Mbp, 158.57Mbp, 163.32Mbp, 168.07Mbp, 175.18Mbp[1.52Mbp], 179.66Mbp, 182.11Mbp] 2025-01-31 09:48:58,691 DEBUG chr2 time: 7.762287345016375 s 2025-01-31 09:48:58,719 DEBUG Processing 226/857 atomic regions from SNP 67509 to 68109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,791 DEBUG Processing 27/68 atomic regions from SNP 7891 to 8494 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:58,868 DEBUG chr2: Fitting background model for 40 segments 2025-01-31 09:48:58,961 DEBUG Processing 227/857 atomic regions from SNP 67809 to 68409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,014 DEBUG Processing 28/68 atomic regions from SNP 8194 to 8797 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:59,195 DEBUG Processing 228/857 atomic regions from SNP 68109 to 68709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,236 DEBUG Processing 29/68 atomic regions from SNP 8497 to 9100 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:59,435 DEBUG Processing 229/857 atomic regions from SNP 68409 to 69009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,462 DEBUG Processing 30/68 atomic regions from SNP 8800 to 9403 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:59,670 DEBUG Processing 230/857 atomic regions from SNP 68709 to 69309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,687 DEBUG Processing 31/68 atomic regions from SNP 9103 to 9706 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:59,903 DEBUG Processing 231/857 atomic regions from SNP 69009 to 69609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,912 DEBUG Processing 32/68 atomic regions from SNP 9406 to 10009 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:00,152 DEBUG Processing 33/68 atomic regions from SNP 9709 to 10312 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:00,163 DEBUG Processing 232/857 atomic regions from SNP 69309 to 69909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,378 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:49:00,380 DEBUG chr8: Signal quantile: 0.991. signal threshold: 15. Best RMSEA: 0.015 2025-01-31 09:49:00,455 DEBUG Processing 34/68 atomic regions from SNP 10012 to 10615 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:00,505 DEBUG Processing 233/857 atomic regions from SNP 69609 to 70209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,687 DEBUG Processing 35/68 atomic regions from SNP 10315 to 10918 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:00,749 DEBUG Processing 234/857 atomic regions from SNP 69909 to 70509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,946 DEBUG Processing 36/68 atomic regions from SNP 10618 to 11221 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:00,990 DEBUG Processing 235/857 atomic regions from SNP 70209 to 70809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,192 DEBUG Processing 37/68 atomic regions from SNP 10921 to 11524 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:01,228 DEBUG Processing 236/857 atomic regions from SNP 70509 to 71109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,411 DEBUG Processing 38/68 atomic regions from SNP 11224 to 11827 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:01,463 DEBUG Processing 237/857 atomic regions from SNP 70809 to 71409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,630 DEBUG Processing 39/68 atomic regions from SNP 11527 to 12130 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:01,699 DEBUG Processing 238/857 atomic regions from SNP 71109 to 71709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,856 DEBUG Processing 40/68 atomic regions from SNP 11830 to 12433 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:01,931 DEBUG Processing 239/857 atomic regions from SNP 71409 to 72009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,078 DEBUG Processing 41/68 atomic regions from SNP 12133 to 12736 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:02,163 DEBUG Processing 240/857 atomic regions from SNP 71709 to 72309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,297 DEBUG Processing 42/68 atomic regions from SNP 12436 to 13039 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:02,398 DEBUG Processing 241/857 atomic regions from SNP 72009 to 72609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,515 DEBUG Processing 43/68 atomic regions from SNP 12739 to 13342 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:02,624 DEBUG Processing 242/857 atomic regions from SNP 72309 to 72909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,733 DEBUG Processing 44/68 atomic regions from SNP 13042 to 13645 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:02,847 DEBUG Processing 243/857 atomic regions from SNP 72609 to 73209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,866 DEBUG chr8 total SNP count: 219936 2025-01-31 09:49:02,866 DEBUG chr8 length: 129401213 2025-01-31 09:49:02,866 DEBUG ----------------------------------------- 2025-01-31 09:49:02,866 INFO Processing SNPs in chr8 2025-01-31 09:49:02,955 DEBUG Processing 45/68 atomic regions from SNP 13345 to 13948 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:03,077 DEBUG Processing 244/857 atomic regions from SNP 72909 to 73509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,082 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 219936)] 2025-01-31 09:49:03,176 DEBUG Processing 46/68 atomic regions from SNP 13648 to 14251 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:03,232 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:03,307 DEBUG Processing 245/857 atomic regions from SNP 73209 to 73809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,393 DEBUG Processing 47/68 atomic regions from SNP 13951 to 14554 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:03,541 DEBUG Processing 246/857 atomic regions from SNP 73509 to 74109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,641 DEBUG Processing 48/68 atomic regions from SNP 14254 to 14857 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:03,772 DEBUG Processing 247/857 atomic regions from SNP 73809 to 74409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,882 DEBUG Processing 49/68 atomic regions from SNP 14557 to 15160 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:04,001 DEBUG Processing 248/857 atomic regions from SNP 74109 to 74709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,127 DEBUG Processing 50/68 atomic regions from SNP 14860 to 15463 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:04,227 DEBUG Processing 249/857 atomic regions from SNP 74409 to 75009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,366 DEBUG Processing 51/68 atomic regions from SNP 15163 to 15766 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:04,457 DEBUG Processing 250/857 atomic regions from SNP 74709 to 75309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,586 DEBUG Processing 52/68 atomic regions from SNP 15466 to 16069 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:04,694 DEBUG Processing 251/857 atomic regions from SNP 75009 to 75609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,819 DEBUG Processing 53/68 atomic regions from SNP 15769 to 16372 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:04,931 DEBUG Processing 252/857 atomic regions from SNP 75309 to 75909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,071 DEBUG Processing 54/68 atomic regions from SNP 16072 to 16675 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:05,162 DEBUG Processing 253/857 atomic regions from SNP 75609 to 76209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,313 DEBUG Processing 55/68 atomic regions from SNP 16375 to 16978 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:05,392 DEBUG Processing 254/857 atomic regions from SNP 75909 to 76509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,538 DEBUG Processing 56/68 atomic regions from SNP 16678 to 17281 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:05,626 DEBUG Processing 255/857 atomic regions from SNP 76209 to 76809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,762 DEBUG Processing 57/68 atomic regions from SNP 16981 to 17584 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:05,854 DEBUG Processing 256/857 atomic regions from SNP 76509 to 77109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,977 DEBUG Processing 58/68 atomic regions from SNP 17284 to 17887 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:06,080 DEBUG Processing 257/857 atomic regions from SNP 76809 to 77409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,192 DEBUG Processing 59/68 atomic regions from SNP 17587 to 18190 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:06,319 DEBUG Processing 258/857 atomic regions from SNP 77109 to 77709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,406 DEBUG Processing 60/68 atomic regions from SNP 17890 to 18493 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:06,547 DEBUG Processing 259/857 atomic regions from SNP 77409 to 78009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,621 DEBUG Processing 61/68 atomic regions from SNP 18193 to 18796 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:06,803 DEBUG Processing 260/857 atomic regions from SNP 77709 to 78309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,832 DEBUG Processing 62/68 atomic regions from SNP 18496 to 19099 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:07,064 DEBUG Processing 261/857 atomic regions from SNP 78009 to 78609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,074 DEBUG Processing 63/68 atomic regions from SNP 18799 to 19402 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:07,323 DEBUG Processing 262/857 atomic regions from SNP 78309 to 78909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,329 DEBUG Processing 64/68 atomic regions from SNP 19102 to 19705 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:07,556 DEBUG Processing 263/857 atomic regions from SNP 78609 to 79209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,583 DEBUG Processing 65/68 atomic regions from SNP 19405 to 20008 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:07,786 DEBUG Processing 264/857 atomic regions from SNP 78909 to 79509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,836 DEBUG Processing 66/68 atomic regions from SNP 19708 to 20311 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:08,019 DEBUG Processing 265/857 atomic regions from SNP 79209 to 79809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,100 DEBUG Processing 67/68 atomic regions from SNP 20011 to 20614 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:08,249 DEBUG Processing 266/857 atomic regions from SNP 79509 to 80109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,348 DEBUG Processing 68/68 atomic regions from SNP 20314 to 20917 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:08,460 DEBUG Unique SNPs positions in subchromosome 1: 20918 2025-01-31 09:49:08,483 DEBUG Processing 267/857 atomic regions from SNP 79809 to 80409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,532 DEBUG Subchromosome time: 18.327819400001317, subchromosome SNPs: 20918 2025-01-31 09:49:08,587 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:08,725 DEBUG Processing 268/857 atomic regions from SNP 80109 to 80709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,987 DEBUG Processing 269/857 atomic regions from SNP 80409 to 81009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,236 DEBUG Processing 270/857 atomic regions from SNP 80709 to 81309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,466 DEBUG Processing 271/857 atomic regions from SNP 81009 to 81609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,698 DEBUG Processing 272/857 atomic regions from SNP 81309 to 81909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,931 DEBUG Processing 273/857 atomic regions from SNP 81609 to 82209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,167 DEBUG Processing 274/857 atomic regions from SNP 81909 to 82509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,402 DEBUG Processing 275/857 atomic regions from SNP 82209 to 82809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,633 DEBUG Processing 276/857 atomic regions from SNP 82509 to 83109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,863 DEBUG Processing 277/857 atomic regions from SNP 82809 to 83409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,095 DEBUG Processing 278/857 atomic regions from SNP 83109 to 83709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,332 DEBUG Processing 279/857 atomic regions from SNP 83409 to 84009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,566 DEBUG Processing 280/857 atomic regions from SNP 83709 to 84309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,806 DEBUG Processing 281/857 atomic regions from SNP 84009 to 84609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,046 DEBUG Processing 282/857 atomic regions from SNP 84309 to 84909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,301 DEBUG Processing 283/857 atomic regions from SNP 84609 to 85209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,535 DEBUG Processing 284/857 atomic regions from SNP 84909 to 85509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,777 DEBUG Processing 285/857 atomic regions from SNP 85209 to 85809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,017 DEBUG Processing 286/857 atomic regions from SNP 85509 to 86109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,257 DEBUG Processing 287/857 atomic regions from SNP 85809 to 86409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,492 DEBUG Processing 288/857 atomic regions from SNP 86109 to 86709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,722 DEBUG Processing 289/857 atomic regions from SNP 86409 to 87009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,951 DEBUG Processing 290/857 atomic regions from SNP 86709 to 87309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,186 DEBUG Processing 291/857 atomic regions from SNP 87009 to 87609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,417 DEBUG Processing 292/857 atomic regions from SNP 87309 to 87909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,642 DEBUG Processing 293/857 atomic regions from SNP 87609 to 88209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,870 DEBUG Processing 294/857 atomic regions from SNP 87909 to 88509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,097 DEBUG Processing 295/857 atomic regions from SNP 88209 to 88809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,320 DEBUG Processing 296/857 atomic regions from SNP 88509 to 89109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,551 DEBUG Processing 297/857 atomic regions from SNP 88809 to 89409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,784 DEBUG Processing 298/857 atomic regions from SNP 89109 to 89709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,019 DEBUG Processing 299/857 atomic regions from SNP 89409 to 90009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,254 DEBUG Processing 300/857 atomic regions from SNP 89709 to 90309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,489 DEBUG Processing 301/857 atomic regions from SNP 90009 to 90609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,727 DEBUG Processing 302/857 atomic regions from SNP 90309 to 90909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,985 DEBUG Processing 303/857 atomic regions from SNP 90609 to 91209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,237 DEBUG Processing 304/857 atomic regions from SNP 90909 to 91509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,481 DEBUG Processing 305/857 atomic regions from SNP 91209 to 91809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,717 DEBUG Processing 306/857 atomic regions from SNP 91509 to 92109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,949 DEBUG Processing 307/857 atomic regions from SNP 91809 to 92409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,186 DEBUG Processing 308/857 atomic regions from SNP 92109 to 92709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,409 DEBUG Processing 309/857 atomic regions from SNP 92409 to 93009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,638 DEBUG Processing 310/857 atomic regions from SNP 92709 to 93309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,866 DEBUG Processing 311/857 atomic regions from SNP 93009 to 93609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,095 DEBUG Processing 312/857 atomic regions from SNP 93309 to 93909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,325 DEBUG Processing 313/857 atomic regions from SNP 93609 to 94209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,552 DEBUG Processing 314/857 atomic regions from SNP 93909 to 94509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,777 DEBUG Processing 315/857 atomic regions from SNP 94209 to 94809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,014 DEBUG Processing 316/857 atomic regions from SNP 94509 to 95109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,238 DEBUG Processing 317/857 atomic regions from SNP 94809 to 95409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,460 DEBUG Processing 318/857 atomic regions from SNP 95109 to 95709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,690 DEBUG Processing 319/857 atomic regions from SNP 95409 to 96009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,918 DEBUG Processing 320/857 atomic regions from SNP 95709 to 96309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,159 DEBUG Processing 321/857 atomic regions from SNP 96009 to 96609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,394 DEBUG Processing 322/857 atomic regions from SNP 96309 to 96909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,628 DEBUG Processing 323/857 atomic regions from SNP 96609 to 97209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,853 DEBUG Processing 324/857 atomic regions from SNP 96909 to 97509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,073 DEBUG Processing 325/857 atomic regions from SNP 97209 to 97809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,294 DEBUG Processing 326/857 atomic regions from SNP 97509 to 98109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,513 DEBUG Processing 327/857 atomic regions from SNP 97809 to 98409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,732 DEBUG Processing 328/857 atomic regions from SNP 98109 to 98709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,848 DEBUG Segmenting atomic regions: 2025-01-31 09:49:22,946 DEBUG Processing 1/748 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,957 DEBUG Processing 329/857 atomic regions from SNP 98409 to 99009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,162 DEBUG Processing 2/748 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,184 DEBUG Processing 330/857 atomic regions from SNP 98709 to 99309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,375 DEBUG Processing 3/748 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,411 DEBUG Processing 331/857 atomic regions from SNP 99009 to 99609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,589 DEBUG Processing 4/748 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,640 DEBUG Processing 332/857 atomic regions from SNP 99309 to 99909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,800 DEBUG Processing 5/748 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,866 DEBUG Processing 333/857 atomic regions from SNP 99609 to 100209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,017 DEBUG Processing 6/748 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,095 DEBUG Processing 334/857 atomic regions from SNP 99909 to 100509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,230 DEBUG Processing 7/748 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,317 DEBUG Processing 335/857 atomic regions from SNP 100209 to 100809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,459 DEBUG Processing 8/748 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,534 DEBUG Processing 336/857 atomic regions from SNP 100509 to 101109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,687 DEBUG Processing 9/748 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,755 DEBUG Processing 337/857 atomic regions from SNP 100809 to 101409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,901 DEBUG Processing 10/748 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,986 DEBUG Processing 338/857 atomic regions from SNP 101109 to 101709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,120 DEBUG Processing 11/748 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,217 DEBUG Processing 339/857 atomic regions from SNP 101409 to 102009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,340 DEBUG Processing 12/748 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,449 DEBUG Processing 340/857 atomic regions from SNP 101709 to 102309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,558 DEBUG Processing 13/748 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,679 DEBUG Processing 341/857 atomic regions from SNP 102009 to 102609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,772 DEBUG Processing 14/748 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,903 DEBUG Processing 342/857 atomic regions from SNP 102309 to 102909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,981 DEBUG Processing 15/748 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,126 DEBUG Processing 343/857 atomic regions from SNP 102609 to 103209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,192 DEBUG Processing 16/748 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,358 DEBUG Processing 344/857 atomic regions from SNP 102909 to 103509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,430 DEBUG Processing 17/748 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,587 DEBUG Processing 345/857 atomic regions from SNP 103209 to 103809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,637 DEBUG Processing 18/748 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,816 DEBUG Processing 346/857 atomic regions from SNP 103509 to 104109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,848 DEBUG Processing 19/748 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,050 DEBUG Processing 347/857 atomic regions from SNP 103809 to 104409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,063 DEBUG Processing 20/748 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,277 DEBUG Processing 21/748 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,281 DEBUG Processing 348/857 atomic regions from SNP 104109 to 104709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,494 DEBUG Processing 22/748 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,512 DEBUG Processing 349/857 atomic regions from SNP 104409 to 105009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,710 DEBUG Processing 23/748 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,742 DEBUG Processing 350/857 atomic regions from SNP 104709 to 105309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,933 DEBUG Processing 24/748 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,979 DEBUG Processing 351/857 atomic regions from SNP 105009 to 105609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,149 DEBUG Processing 25/748 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,209 DEBUG Processing 352/857 atomic regions from SNP 105309 to 105909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,370 DEBUG Processing 26/748 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,435 DEBUG Processing 353/857 atomic regions from SNP 105609 to 106209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,603 DEBUG Processing 27/748 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,657 DEBUG Processing 354/857 atomic regions from SNP 105909 to 106509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,820 DEBUG Processing 28/748 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,878 DEBUG Processing 355/857 atomic regions from SNP 106209 to 106809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,032 DEBUG Processing 29/748 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,104 DEBUG Processing 356/857 atomic regions from SNP 106509 to 107109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,183 DEBUG Segmenting atomic regions: 2025-01-31 09:49:29,243 DEBUG Processing 30/748 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,281 DEBUG Processing 1/732 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,328 DEBUG Processing 357/857 atomic regions from SNP 106809 to 107409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,452 DEBUG Processing 31/748 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,518 DEBUG Processing 2/732 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,554 DEBUG Processing 358/857 atomic regions from SNP 107109 to 107709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,661 DEBUG Processing 32/748 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,777 DEBUG Processing 3/732 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,780 DEBUG Processing 359/857 atomic regions from SNP 107409 to 108009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,867 DEBUG Processing 33/748 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,006 DEBUG Processing 360/857 atomic regions from SNP 107709 to 108309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,043 DEBUG Processing 4/732 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,078 DEBUG Processing 34/748 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,232 DEBUG Processing 361/857 atomic regions from SNP 108009 to 108609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,277 DEBUG Processing 5/732 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,292 DEBUG Processing 35/748 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,459 DEBUG Processing 362/857 atomic regions from SNP 108309 to 108909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,505 DEBUG Processing 36/748 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,510 DEBUG Processing 6/732 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,689 DEBUG Processing 363/857 atomic regions from SNP 108609 to 109209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,723 DEBUG Processing 37/748 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,766 DEBUG Processing 7/732 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,914 DEBUG Processing 364/857 atomic regions from SNP 108909 to 109509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,937 DEBUG Processing 38/748 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,025 DEBUG Processing 8/732 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,146 DEBUG Processing 365/857 atomic regions from SNP 109209 to 109809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,154 DEBUG Processing 39/748 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,259 DEBUG Processing 9/732 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,369 DEBUG Processing 40/748 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,377 DEBUG Processing 366/857 atomic regions from SNP 109509 to 110109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,488 DEBUG Processing 10/732 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,583 DEBUG Processing 41/748 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,610 DEBUG Processing 367/857 atomic regions from SNP 109809 to 110409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,725 DEBUG Processing 11/732 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,802 DEBUG Processing 42/748 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,846 DEBUG Processing 368/857 atomic regions from SNP 110109 to 110709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,955 DEBUG Processing 12/732 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,019 DEBUG Processing 43/748 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,080 DEBUG Processing 369/857 atomic regions from SNP 110409 to 111009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,182 DEBUG Processing 13/732 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,232 DEBUG Processing 44/748 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,313 DEBUG Processing 370/857 atomic regions from SNP 110709 to 111309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,410 DEBUG Processing 14/732 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,441 DEBUG Processing 45/748 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,539 DEBUG Processing 371/857 atomic regions from SNP 111009 to 111609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,653 DEBUG Processing 15/732 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,657 DEBUG Processing 46/748 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,765 DEBUG Processing 372/857 atomic regions from SNP 111309 to 111909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,877 DEBUG Processing 47/748 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,886 DEBUG Processing 16/732 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,012 DEBUG Processing 373/857 atomic regions from SNP 111609 to 112209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,096 DEBUG Processing 48/748 atomic regions from SNP 14147 to 14747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,121 DEBUG Processing 17/732 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,270 DEBUG Processing 374/857 atomic regions from SNP 111909 to 112509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,315 DEBUG Processing 49/748 atomic regions from SNP 14447 to 15047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,361 DEBUG Processing 18/732 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,515 DEBUG Processing 375/857 atomic regions from SNP 112209 to 112809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,534 DEBUG Processing 50/748 atomic regions from SNP 14747 to 15347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,598 DEBUG Processing 19/732 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,645 DEBUG Segmenting atomic regions: 2025-01-31 09:49:33,748 DEBUG Processing 376/857 atomic regions from SNP 112509 to 113109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,749 DEBUG Processing 1/705 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,757 DEBUG Processing 51/748 atomic regions from SNP 15047 to 15647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,834 DEBUG Processing 20/732 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,981 DEBUG Processing 52/748 atomic regions from SNP 15347 to 15947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,984 DEBUG Processing 2/705 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,985 DEBUG Processing 377/857 atomic regions from SNP 112809 to 113409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,073 DEBUG Processing 21/732 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,199 DEBUG Processing 53/748 atomic regions from SNP 15647 to 16247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,216 DEBUG Processing 3/705 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,221 DEBUG Processing 378/857 atomic regions from SNP 113109 to 113709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,310 DEBUG Processing 22/732 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,414 DEBUG Processing 54/748 atomic regions from SNP 15947 to 16547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,446 DEBUG Processing 4/705 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,452 DEBUG Processing 379/857 atomic regions from SNP 113409 to 114009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,543 DEBUG Processing 23/732 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,627 DEBUG Processing 55/748 atomic regions from SNP 16247 to 16847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,673 DEBUG Processing 5/705 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,691 DEBUG Processing 380/857 atomic regions from SNP 113709 to 114309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,776 DEBUG Processing 24/732 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,837 DEBUG Processing 56/748 atomic regions from SNP 16547 to 17147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,923 DEBUG Processing 6/705 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,928 DEBUG Processing 381/857 atomic regions from SNP 114009 to 114609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,012 DEBUG Processing 25/732 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,064 DEBUG Processing 57/748 atomic regions from SNP 16847 to 17447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,156 DEBUG Processing 382/857 atomic regions from SNP 114309 to 114909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,180 DEBUG Processing 7/705 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,244 DEBUG Processing 26/732 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,303 DEBUG Processing 58/748 atomic regions from SNP 17147 to 17747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,387 DEBUG Processing 383/857 atomic regions from SNP 114609 to 115209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,424 DEBUG Processing 8/705 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,469 DEBUG Processing 27/732 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,518 DEBUG Processing 59/748 atomic regions from SNP 17447 to 18047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,620 DEBUG Processing 384/857 atomic regions from SNP 114909 to 115509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,665 DEBUG Processing 9/705 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,700 DEBUG Processing 28/732 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,727 DEBUG Processing 60/748 atomic regions from SNP 17747 to 18347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,847 DEBUG Processing 385/857 atomic regions from SNP 115209 to 115809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,919 DEBUG Processing 10/705 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,934 DEBUG Processing 29/732 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,940 DEBUG Processing 61/748 atomic regions from SNP 18047 to 18647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,072 DEBUG Processing 386/857 atomic regions from SNP 115509 to 116109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,158 DEBUG Processing 62/748 atomic regions from SNP 18347 to 18947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,174 DEBUG Processing 30/732 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,174 DEBUG Processing 11/705 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,298 DEBUG Processing 387/857 atomic regions from SNP 115809 to 116409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,375 DEBUG Processing 63/748 atomic regions from SNP 18647 to 19247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,407 DEBUG Processing 31/732 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,429 DEBUG Processing 12/705 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,524 DEBUG Processing 388/857 atomic regions from SNP 116109 to 116709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,616 DEBUG Processing 64/748 atomic regions from SNP 18947 to 19547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,641 DEBUG Processing 32/732 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,683 DEBUG Processing 13/705 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,750 DEBUG Processing 389/857 atomic regions from SNP 116409 to 117009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,845 DEBUG Processing 65/748 atomic regions from SNP 19247 to 19847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,881 DEBUG Processing 33/732 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,930 DEBUG Processing 14/705 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,976 DEBUG Processing 390/857 atomic regions from SNP 116709 to 117309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,056 DEBUG Processing 66/748 atomic regions from SNP 19547 to 20147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,114 DEBUG Processing 34/732 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,179 DEBUG Processing 15/705 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,209 DEBUG Processing 391/857 atomic regions from SNP 117009 to 117609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,270 DEBUG Processing 67/748 atomic regions from SNP 19847 to 20447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,337 DEBUG Processing 35/732 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,403 DEBUG Processing 16/705 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,462 DEBUG Processing 392/857 atomic regions from SNP 117309 to 117909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,487 DEBUG Processing 68/748 atomic regions from SNP 20147 to 20747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,563 DEBUG Processing 36/732 atomic regions from SNP 10535 to 11135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,625 DEBUG Processing 17/705 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,631 DEBUG Subchromosome time: 401.77180283505004, subchromosome SNPs: 341081 2025-01-31 09:49:37,632 DEBUG Estimated BADs: [0.69, 4.15, 1.04, 0.69, 4.15, 1.04, 4.15, 2.08, 18.68, 1.04, 8.30, 2.08, 4.15, 2.08, 20.75, 2.08, 12.45, 2.08, 20.75, 1.04, 4.15, 20.75, 4.15, 12.45, 1.04, 0.69, 2.08, 0.52, 4.15, 2.08, 6.23, 2.08, 0.52, 2.08, 0.52, 2.08, 6.23, 2.08, 4.15, 16.60, 4.15, 2.08, 6.23, 4.15, 20.75, 2.08, 8.30, 4.15] SNP counts: [10858, 704, 11665, 24235, 355, 4419, 11071, 8532, 95, 13353, 289, 10802, 12750, 12560, 162, 3568, 2401, 12973, 107, 3540, 1743, 508, 13288, 429, 7940, 9621, 5711, 17788, 3509, 19731, 10007, 5941, 5419, 2697, 8091, 10427, 3387, 6228, 19669, 507, 1807, 10560, 5617, 7532, 181, 10072, 2014, 6218] SNP IDs counts: [10858, 704, 11665, 24235, 355, 4419, 11071, 8532, 95, 13353, 289, 10802, 12750, 12560, 162, 3568, 2401, 12973, 107, 3540, 1743, 508, 13288, 429, 7940, 9621, 5711, 17788, 3509, 19731, 10007, 5941, 5419, 2697, 8091, 10427, 3387, 6228, 19669, 507, 1807, 10560, 5617, 7532, 181, 10072, 2014, 6218] Critical gap: 756956bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 9.54Mbp, 9.92Mbp, 16.62Mbp, 30.78Mbp, 30.98Mbp, 33.58Mbp, 39.51Mbp, 44.10Mbp, 44.15Mbp, 52.10Mbp, 52.25Mbp, 58.26Mbp, 65.21Mbp, 72.22Mbp, 72.31Mbp, 74.23Mbp, 75.56Mbp, 82.79Mbp, 82.84Mbp, 84.84Mbp, 86.27Mbp, 86.53Mbp, 93.61Mbp, 93.84Mbp, 98.66Mbp, 104.37Mbp, 107.59Mbp, 118.27Mbp, 120.12Mbp, 131.05Mbp, 136.30Mbp, 139.57Mbp, 142.86Mbp, 144.50Mbp, 149.34Mbp, 155.02Mbp, 156.86Mbp, 160.19Mbp, 171.01Mbp, 171.28Mbp, 172.28Mbp, 178.30Mbp, 181.28Mbp, 185.43Mbp, 185.52Mbp, 190.88Mbp, 191.95Mbp, 195.47Mbp] 2025-01-31 09:49:37,632 DEBUG chr1 time: 401.7726161699975 s 2025-01-31 09:49:37,705 DEBUG Processing 69/748 atomic regions from SNP 20447 to 21047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,722 DEBUG Processing 393/857 atomic regions from SNP 117609 to 118209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,792 DEBUG Processing 37/732 atomic regions from SNP 10835 to 11435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,824 DEBUG chr1: Fitting background model for 48 segments 2025-01-31 09:49:37,853 DEBUG Processing 18/705 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,930 DEBUG Processing 70/748 atomic regions from SNP 20747 to 21347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,953 DEBUG Processing 394/857 atomic regions from SNP 117909 to 118509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,027 DEBUG Processing 38/732 atomic regions from SNP 11135 to 11735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,080 DEBUG Processing 19/705 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,152 DEBUG Processing 71/748 atomic regions from SNP 21047 to 21647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,192 DEBUG Processing 395/857 atomic regions from SNP 118209 to 118809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,267 DEBUG Processing 39/732 atomic regions from SNP 11435 to 12035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,320 DEBUG Processing 20/705 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,383 DEBUG Processing 72/748 atomic regions from SNP 21347 to 21947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,447 DEBUG Processing 396/857 atomic regions from SNP 118509 to 119109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,500 DEBUG Processing 40/732 atomic regions from SNP 11735 to 12335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,551 DEBUG Processing 21/705 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,603 DEBUG Processing 73/748 atomic regions from SNP 21647 to 22247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,709 DEBUG Processing 397/857 atomic regions from SNP 118809 to 119409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,736 DEBUG Processing 41/732 atomic regions from SNP 12035 to 12635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,811 DEBUG Processing 22/705 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,820 DEBUG Processing 74/748 atomic regions from SNP 21947 to 22547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,963 DEBUG Processing 398/857 atomic regions from SNP 119109 to 119709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,968 DEBUG Processing 42/732 atomic regions from SNP 12335 to 12935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,040 DEBUG Processing 75/748 atomic regions from SNP 22247 to 22847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,072 DEBUG Processing 23/705 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,192 DEBUG Processing 43/732 atomic regions from SNP 12635 to 13235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,214 DEBUG Processing 399/857 atomic regions from SNP 119409 to 120009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,261 DEBUG Processing 76/748 atomic regions from SNP 22547 to 23147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,329 DEBUG Processing 24/705 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,416 DEBUG Processing 44/732 atomic regions from SNP 12935 to 13535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,450 DEBUG Processing 400/857 atomic regions from SNP 119709 to 120309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,478 DEBUG Processing 77/748 atomic regions from SNP 22847 to 23447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,586 DEBUG Processing 25/705 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,646 DEBUG Processing 45/732 atomic regions from SNP 13235 to 13835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,701 DEBUG Processing 78/748 atomic regions from SNP 23147 to 23747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,715 DEBUG Processing 401/857 atomic regions from SNP 120009 to 120609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,833 DEBUG Processing 26/705 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,900 DEBUG Processing 46/732 atomic regions from SNP 13535 to 14135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,927 DEBUG Processing 79/748 atomic regions from SNP 23447 to 24047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,985 DEBUG Processing 402/857 atomic regions from SNP 120309 to 120909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,066 DEBUG Processing 27/705 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,144 DEBUG Processing 47/732 atomic regions from SNP 13835 to 14435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,157 DEBUG Processing 80/748 atomic regions from SNP 23747 to 24347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,271 DEBUG Processing 403/857 atomic regions from SNP 120609 to 121209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,323 DEBUG Processing 28/705 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,364 DEBUG Processing 48/732 atomic regions from SNP 14135 to 14735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,374 DEBUG Processing 81/748 atomic regions from SNP 24047 to 24647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,540 DEBUG Processing 404/857 atomic regions from SNP 120909 to 121509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,589 DEBUG Processing 29/705 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,597 DEBUG Processing 82/748 atomic regions from SNP 24347 to 24947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,620 DEBUG Processing 49/732 atomic regions from SNP 14435 to 15035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,798 DEBUG Processing 405/857 atomic regions from SNP 121209 to 121809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,827 DEBUG Processing 83/748 atomic regions from SNP 24647 to 25247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,857 DEBUG Processing 30/705 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,901 DEBUG Processing 50/732 atomic regions from SNP 14735 to 15335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,047 DEBUG Processing 406/857 atomic regions from SNP 121509 to 122109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,054 DEBUG Processing 84/748 atomic regions from SNP 24947 to 25547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,116 DEBUG Processing 31/705 atomic regions from SNP 9030 to 9630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,161 DEBUG Processing 51/732 atomic regions from SNP 15035 to 15635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,288 DEBUG Processing 85/748 atomic regions from SNP 25247 to 25847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,292 DEBUG Processing 407/857 atomic regions from SNP 121809 to 122409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,379 DEBUG Processing 32/705 atomic regions from SNP 9330 to 9930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,402 DEBUG Processing 52/732 atomic regions from SNP 15335 to 15935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,519 DEBUG Processing 86/748 atomic regions from SNP 25547 to 26147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,533 DEBUG Processing 408/857 atomic regions from SNP 122109 to 122709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,632 DEBUG Processing 53/732 atomic regions from SNP 15635 to 16235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,642 DEBUG Processing 33/705 atomic regions from SNP 9630 to 10230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,736 DEBUG Processing 87/748 atomic regions from SNP 25847 to 26447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,767 DEBUG Processing 409/857 atomic regions from SNP 122409 to 123009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,865 DEBUG Processing 54/732 atomic regions from SNP 15935 to 16535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,888 DEBUG Processing 34/705 atomic regions from SNP 9930 to 10530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,951 DEBUG Processing 88/748 atomic regions from SNP 26147 to 26747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,992 DEBUG Processing 410/857 atomic regions from SNP 122709 to 123309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,102 DEBUG Processing 55/732 atomic regions from SNP 16235 to 16835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,142 DEBUG Processing 35/705 atomic regions from SNP 10230 to 10830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,166 DEBUG Processing 89/748 atomic regions from SNP 26447 to 27047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,218 DEBUG Processing 411/857 atomic regions from SNP 123009 to 123609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,341 DEBUG Processing 56/732 atomic regions from SNP 16535 to 17135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,389 DEBUG Processing 36/705 atomic regions from SNP 10530 to 11130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,396 DEBUG Processing 90/748 atomic regions from SNP 26747 to 27347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,449 DEBUG Processing 412/857 atomic regions from SNP 123309 to 123909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,576 DEBUG Processing 57/732 atomic regions from SNP 16835 to 17435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,621 DEBUG Processing 37/705 atomic regions from SNP 10830 to 11430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,622 DEBUG Processing 91/748 atomic regions from SNP 27047 to 27647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,679 DEBUG Processing 413/857 atomic regions from SNP 123609 to 124209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,822 DEBUG Processing 58/732 atomic regions from SNP 17135 to 17735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,847 DEBUG Processing 92/748 atomic regions from SNP 27347 to 27947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,856 DEBUG Processing 38/705 atomic regions from SNP 11130 to 11730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,913 DEBUG Processing 414/857 atomic regions from SNP 123909 to 124509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,071 DEBUG Processing 93/748 atomic regions from SNP 27647 to 28247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,082 DEBUG Processing 59/732 atomic regions from SNP 17435 to 18035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,106 DEBUG Processing 39/705 atomic regions from SNP 11430 to 12030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,149 DEBUG Processing 415/857 atomic regions from SNP 124209 to 124809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,297 DEBUG Processing 94/748 atomic regions from SNP 27947 to 28547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,355 DEBUG Processing 60/732 atomic regions from SNP 17735 to 18335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,371 DEBUG Processing 40/705 atomic regions from SNP 11730 to 12330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,387 DEBUG Processing 416/857 atomic regions from SNP 124509 to 125109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,513 DEBUG Processing 95/748 atomic regions from SNP 28247 to 28847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,619 DEBUG Processing 61/732 atomic regions from SNP 18035 to 18635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,628 DEBUG Processing 417/857 atomic regions from SNP 124809 to 125409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,638 DEBUG Processing 41/705 atomic regions from SNP 12030 to 12630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,729 DEBUG Processing 96/748 atomic regions from SNP 28547 to 29147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,862 DEBUG Processing 62/732 atomic regions from SNP 18335 to 18935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,874 DEBUG Processing 418/857 atomic regions from SNP 125109 to 125709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,901 DEBUG Processing 42/705 atomic regions from SNP 12330 to 12930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,948 DEBUG Processing 97/748 atomic regions from SNP 28847 to 29447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,100 DEBUG Processing 63/732 atomic regions from SNP 18635 to 19235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,116 DEBUG Processing 419/857 atomic regions from SNP 125409 to 126009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,172 DEBUG Processing 43/705 atomic regions from SNP 12630 to 13230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,179 DEBUG Processing 98/748 atomic regions from SNP 29147 to 29747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,342 DEBUG Processing 64/732 atomic regions from SNP 18935 to 19535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,359 DEBUG Processing 420/857 atomic regions from SNP 125709 to 126309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,420 DEBUG Processing 99/748 atomic regions from SNP 29447 to 30047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,427 DEBUG Processing 44/705 atomic regions from SNP 12930 to 13530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,581 DEBUG Processing 65/732 atomic regions from SNP 19235 to 19835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,597 DEBUG Processing 421/857 atomic regions from SNP 126009 to 126609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,652 DEBUG Processing 100/748 atomic regions from SNP 29747 to 30347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,670 DEBUG Processing 45/705 atomic regions from SNP 13230 to 13830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,834 DEBUG Processing 66/732 atomic regions from SNP 19535 to 20135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,841 DEBUG Processing 422/857 atomic regions from SNP 126309 to 126909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,904 DEBUG Processing 46/705 atomic regions from SNP 13530 to 14130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,907 DEBUG Processing 101/748 atomic regions from SNP 30047 to 30647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,069 DEBUG Processing 67/732 atomic regions from SNP 19835 to 20435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,077 DEBUG Processing 423/857 atomic regions from SNP 126609 to 127209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,134 DEBUG Processing 47/705 atomic regions from SNP 13830 to 14430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,154 DEBUG Processing 102/748 atomic regions from SNP 30347 to 30947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,302 DEBUG Processing 68/732 atomic regions from SNP 20135 to 20735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,314 DEBUG Processing 424/857 atomic regions from SNP 126909 to 127509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,372 DEBUG Processing 48/705 atomic regions from SNP 14130 to 14730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,381 DEBUG Processing 103/748 atomic regions from SNP 30647 to 31247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,536 DEBUG Processing 69/732 atomic regions from SNP 20435 to 21035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,557 DEBUG Processing 425/857 atomic regions from SNP 127209 to 127809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,608 DEBUG Processing 104/748 atomic regions from SNP 30947 to 31547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,608 DEBUG Processing 49/705 atomic regions from SNP 14430 to 15030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,793 DEBUG Processing 70/732 atomic regions from SNP 20735 to 21335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,802 DEBUG Processing 426/857 atomic regions from SNP 127509 to 128109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,843 DEBUG Processing 50/705 atomic regions from SNP 14730 to 15330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,849 DEBUG Processing 105/748 atomic regions from SNP 31247 to 31847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,044 DEBUG Processing 427/857 atomic regions from SNP 127809 to 128409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,057 DEBUG Processing 71/732 atomic regions from SNP 21035 to 21635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,076 DEBUG Processing 51/705 atomic regions from SNP 15030 to 15630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,100 DEBUG Processing 106/748 atomic regions from SNP 31547 to 32147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,289 DEBUG Processing 428/857 atomic regions from SNP 128109 to 128709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,303 DEBUG Processing 72/732 atomic regions from SNP 21335 to 21935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,312 DEBUG Processing 52/705 atomic regions from SNP 15330 to 15930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,335 DEBUG Processing 107/748 atomic regions from SNP 31847 to 32447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,537 DEBUG Processing 429/857 atomic regions from SNP 128409 to 129009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,546 DEBUG Processing 73/732 atomic regions from SNP 21635 to 22235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,555 DEBUG Processing 53/705 atomic regions from SNP 15630 to 16230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,576 DEBUG Processing 108/748 atomic regions from SNP 32147 to 32747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,780 DEBUG Processing 430/857 atomic regions from SNP 128709 to 129309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,784 DEBUG Processing 74/732 atomic regions from SNP 21935 to 22535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,792 DEBUG Processing 54/705 atomic regions from SNP 15930 to 16530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,804 DEBUG Processing 109/748 atomic regions from SNP 32447 to 33047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,018 DEBUG Processing 431/857 atomic regions from SNP 129009 to 129609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,019 DEBUG Processing 75/732 atomic regions from SNP 22235 to 22835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,028 DEBUG Processing 110/748 atomic regions from SNP 32747 to 33347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,045 DEBUG Processing 55/705 atomic regions from SNP 16230 to 16830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,250 DEBUG Processing 111/748 atomic regions from SNP 33047 to 33647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,256 DEBUG Processing 432/857 atomic regions from SNP 129309 to 129909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,257 DEBUG Processing 76/732 atomic regions from SNP 22535 to 23135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,288 DEBUG Processing 56/705 atomic regions from SNP 16530 to 17130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,469 DEBUG Processing 112/748 atomic regions from SNP 33347 to 33947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,492 DEBUG Processing 433/857 atomic regions from SNP 129609 to 130209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,493 DEBUG Processing 77/732 atomic regions from SNP 22835 to 23435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,516 DEBUG Processing 57/705 atomic regions from SNP 16830 to 17430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,688 DEBUG Processing 113/748 atomic regions from SNP 33647 to 34247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,723 DEBUG Processing 78/732 atomic regions from SNP 23135 to 23735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,730 DEBUG Processing 434/857 atomic regions from SNP 129909 to 130509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,747 DEBUG Processing 58/705 atomic regions from SNP 17130 to 17730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,903 DEBUG Processing 114/748 atomic regions from SNP 33947 to 34547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,949 DEBUG Processing 79/732 atomic regions from SNP 23435 to 24035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,962 DEBUG Processing 435/857 atomic regions from SNP 130209 to 130809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,970 DEBUG Processing 59/705 atomic regions from SNP 17430 to 18030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,121 DEBUG Processing 115/748 atomic regions from SNP 34247 to 34847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,179 DEBUG Processing 80/732 atomic regions from SNP 23735 to 24335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,194 DEBUG Processing 60/705 atomic regions from SNP 17730 to 18330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,195 DEBUG Processing 436/857 atomic regions from SNP 130509 to 131109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,332 DEBUG Processing 116/748 atomic regions from SNP 34547 to 35147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,411 DEBUG Processing 81/732 atomic regions from SNP 24035 to 24635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,426 DEBUG Processing 61/705 atomic regions from SNP 18030 to 18630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,431 DEBUG Processing 437/857 atomic regions from SNP 130809 to 131409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,545 DEBUG Processing 117/748 atomic regions from SNP 34847 to 35447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,650 DEBUG Processing 82/732 atomic regions from SNP 24335 to 24935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,667 DEBUG Processing 438/857 atomic regions from SNP 131109 to 131709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,675 DEBUG Processing 62/705 atomic regions from SNP 18330 to 18930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,760 DEBUG Processing 118/748 atomic regions from SNP 35147 to 35747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,886 DEBUG Processing 83/732 atomic regions from SNP 24635 to 25235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,902 DEBUG Processing 439/857 atomic regions from SNP 131409 to 132009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,918 DEBUG Processing 63/705 atomic regions from SNP 18630 to 19230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,976 DEBUG Processing 119/748 atomic regions from SNP 35447 to 36047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,118 DEBUG Processing 84/732 atomic regions from SNP 24935 to 25535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,133 DEBUG Processing 440/857 atomic regions from SNP 131709 to 132309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,164 DEBUG Processing 64/705 atomic regions from SNP 18930 to 19530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,190 DEBUG Processing 120/748 atomic regions from SNP 35747 to 36347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,347 DEBUG Processing 85/732 atomic regions from SNP 25235 to 25835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,361 DEBUG Processing 441/857 atomic regions from SNP 132009 to 132609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,384 DEBUG Processing 65/705 atomic regions from SNP 19230 to 19830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,403 DEBUG Processing 121/748 atomic regions from SNP 36047 to 36647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,577 DEBUG Processing 86/732 atomic regions from SNP 25535 to 26135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,597 DEBUG Processing 442/857 atomic regions from SNP 132309 to 132909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,604 DEBUG Processing 66/705 atomic regions from SNP 19530 to 20130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,617 DEBUG Processing 122/748 atomic regions from SNP 36347 to 36947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,806 DEBUG Processing 87/732 atomic regions from SNP 25835 to 26435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,834 DEBUG Processing 67/705 atomic regions from SNP 19830 to 20430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,836 DEBUG Processing 443/857 atomic regions from SNP 132609 to 133209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,850 DEBUG Processing 123/748 atomic regions from SNP 36647 to 37247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,028 DEBUG Processing 88/732 atomic regions from SNP 26135 to 26735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,064 DEBUG Processing 68/705 atomic regions from SNP 20130 to 20730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,075 DEBUG Processing 444/857 atomic regions from SNP 132909 to 133509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,076 DEBUG Processing 124/748 atomic regions from SNP 36947 to 37547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,242 DEBUG Processing 89/732 atomic regions from SNP 26435 to 27035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,293 DEBUG Processing 69/705 atomic regions from SNP 20430 to 21030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,299 DEBUG Processing 125/748 atomic regions from SNP 37247 to 37847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,313 DEBUG Processing 445/857 atomic regions from SNP 133209 to 133809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,459 DEBUG Processing 90/732 atomic regions from SNP 26735 to 27335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,519 DEBUG Processing 126/748 atomic regions from SNP 37547 to 38147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,523 DEBUG Processing 70/705 atomic regions from SNP 20730 to 21330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,547 DEBUG Processing 446/857 atomic regions from SNP 133509 to 134109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,680 DEBUG Processing 91/732 atomic regions from SNP 27035 to 27635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,751 DEBUG Processing 127/748 atomic regions from SNP 37847 to 38447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,752 DEBUG Processing 71/705 atomic regions from SNP 21030 to 21630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,783 DEBUG Processing 447/857 atomic regions from SNP 133809 to 134409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,895 DEBUG Processing 92/732 atomic regions from SNP 27335 to 27935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,977 DEBUG Processing 72/705 atomic regions from SNP 21330 to 21930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,978 DEBUG Processing 128/748 atomic regions from SNP 38147 to 38747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,012 DEBUG Processing 448/857 atomic regions from SNP 134109 to 134709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,113 DEBUG Processing 93/732 atomic regions from SNP 27635 to 28235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,189 DEBUG Processing 129/748 atomic regions from SNP 38447 to 39047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,193 DEBUG Processing 73/705 atomic regions from SNP 21630 to 22230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,242 DEBUG Processing 449/857 atomic regions from SNP 134409 to 135009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,334 DEBUG Processing 94/732 atomic regions from SNP 27935 to 28535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,397 DEBUG Processing 130/748 atomic regions from SNP 38747 to 39347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,415 DEBUG Processing 74/705 atomic regions from SNP 21930 to 22530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,480 DEBUG Processing 450/857 atomic regions from SNP 134709 to 135309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,559 DEBUG Processing 95/732 atomic regions from SNP 28235 to 28835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,610 DEBUG Processing 131/748 atomic regions from SNP 39047 to 39647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,634 DEBUG Processing 75/705 atomic regions from SNP 22230 to 22830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,714 DEBUG Processing 451/857 atomic regions from SNP 135009 to 135609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,789 DEBUG Processing 96/732 atomic regions from SNP 28535 to 29135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,824 DEBUG Processing 132/748 atomic regions from SNP 39347 to 39947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,854 DEBUG Processing 76/705 atomic regions from SNP 22530 to 23130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,947 DEBUG Processing 452/857 atomic regions from SNP 135309 to 135909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,018 DEBUG Processing 97/732 atomic regions from SNP 28835 to 29435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,041 DEBUG Processing 133/748 atomic regions from SNP 39647 to 40247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,075 DEBUG Processing 77/705 atomic regions from SNP 22830 to 23430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,182 DEBUG Processing 453/857 atomic regions from SNP 135609 to 136209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,251 DEBUG Processing 98/732 atomic regions from SNP 29135 to 29735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,258 DEBUG Processing 134/748 atomic regions from SNP 39947 to 40547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,297 DEBUG Processing 78/705 atomic regions from SNP 23130 to 23730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,413 DEBUG Processing 454/857 atomic regions from SNP 135909 to 136509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,478 DEBUG Processing 135/748 atomic regions from SNP 40247 to 40847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,479 DEBUG Processing 99/732 atomic regions from SNP 29435 to 30035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,531 DEBUG Processing 79/705 atomic regions from SNP 23430 to 24030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,644 DEBUG Processing 455/857 atomic regions from SNP 136209 to 136809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,699 DEBUG Processing 136/748 atomic regions from SNP 40547 to 41147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,703 DEBUG Processing 100/732 atomic regions from SNP 29735 to 30335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,781 DEBUG Processing 80/705 atomic regions from SNP 23730 to 24330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,876 DEBUG Processing 456/857 atomic regions from SNP 136509 to 137109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,916 DEBUG Processing 137/748 atomic regions from SNP 40847 to 41447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,924 DEBUG Processing 101/732 atomic regions from SNP 30035 to 30635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,999 DEBUG Processing 81/705 atomic regions from SNP 24030 to 24630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,110 DEBUG Processing 457/857 atomic regions from SNP 136809 to 137409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,139 DEBUG Processing 138/748 atomic regions from SNP 41147 to 41747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,165 DEBUG Processing 102/732 atomic regions from SNP 30335 to 30935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,224 DEBUG Processing 82/705 atomic regions from SNP 24330 to 24930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,347 DEBUG Processing 458/857 atomic regions from SNP 137109 to 137709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,364 DEBUG Processing 139/748 atomic regions from SNP 41447 to 42047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,409 DEBUG Processing 103/732 atomic regions from SNP 30635 to 31235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,449 DEBUG Processing 83/705 atomic regions from SNP 24630 to 25230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,584 DEBUG Processing 459/857 atomic regions from SNP 137409 to 138009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,585 DEBUG Processing 140/748 atomic regions from SNP 41747 to 42347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,649 DEBUG Processing 104/732 atomic regions from SNP 30935 to 31535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,676 DEBUG Processing 84/705 atomic regions from SNP 24930 to 25530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,815 DEBUG Processing 141/748 atomic regions from SNP 42047 to 42647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,827 DEBUG Processing 460/857 atomic regions from SNP 137709 to 138309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,880 DEBUG Processing 105/732 atomic regions from SNP 31235 to 31835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,910 DEBUG Processing 85/705 atomic regions from SNP 25230 to 25830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,040 DEBUG Processing 142/748 atomic regions from SNP 42347 to 42947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,076 DEBUG Processing 461/857 atomic regions from SNP 138009 to 138609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,121 DEBUG Processing 106/732 atomic regions from SNP 31535 to 32135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,141 DEBUG Processing 86/705 atomic regions from SNP 25530 to 26130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,269 DEBUG Processing 143/748 atomic regions from SNP 42647 to 43247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,337 DEBUG Processing 462/857 atomic regions from SNP 138309 to 138909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,370 DEBUG Processing 107/732 atomic regions from SNP 31835 to 32435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,375 DEBUG Processing 87/705 atomic regions from SNP 25830 to 26430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,491 DEBUG Processing 144/748 atomic regions from SNP 42947 to 43547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,574 DEBUG Processing 463/857 atomic regions from SNP 138609 to 139209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,612 DEBUG Processing 88/705 atomic regions from SNP 26130 to 26730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,637 DEBUG Processing 108/732 atomic regions from SNP 32135 to 32735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,723 DEBUG Processing 145/748 atomic regions from SNP 43247 to 43847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,843 DEBUG Processing 464/857 atomic regions from SNP 138909 to 139509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,853 DEBUG Processing 89/705 atomic regions from SNP 26430 to 27030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,908 DEBUG Processing 109/732 atomic regions from SNP 32435 to 33035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,953 DEBUG Processing 146/748 atomic regions from SNP 43547 to 44147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,090 DEBUG Processing 90/705 atomic regions from SNP 26730 to 27330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,121 DEBUG Processing 465/857 atomic regions from SNP 139209 to 139809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,163 DEBUG Processing 110/732 atomic regions from SNP 32735 to 33335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,183 DEBUG Processing 147/748 atomic regions from SNP 43847 to 44447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,334 DEBUG Processing 91/705 atomic regions from SNP 27030 to 27630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,413 DEBUG Processing 466/857 atomic regions from SNP 139509 to 140109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,416 DEBUG Processing 111/732 atomic regions from SNP 33035 to 33635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,424 DEBUG Processing 148/748 atomic regions from SNP 44147 to 44747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,571 DEBUG Processing 92/705 atomic regions from SNP 27330 to 27930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,659 DEBUG Processing 112/732 atomic regions from SNP 33335 to 33935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,663 DEBUG Processing 149/748 atomic regions from SNP 44447 to 45047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,700 DEBUG Processing 467/857 atomic regions from SNP 139809 to 140409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,805 DEBUG Processing 93/705 atomic regions from SNP 27630 to 28230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,894 DEBUG Processing 150/748 atomic regions from SNP 44747 to 45347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,902 DEBUG Processing 113/732 atomic regions from SNP 33635 to 34235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,958 DEBUG Processing 468/857 atomic regions from SNP 140109 to 140709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,050 DEBUG Processing 94/705 atomic regions from SNP 27930 to 28530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,122 DEBUG Processing 151/748 atomic regions from SNP 45047 to 45647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,142 DEBUG Processing 114/732 atomic regions from SNP 33935 to 34535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,215 DEBUG Processing 469/857 atomic regions from SNP 140409 to 141009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,285 DEBUG Processing 95/705 atomic regions from SNP 28230 to 28830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,352 DEBUG Processing 152/748 atomic regions from SNP 45347 to 45947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,374 DEBUG Processing 115/732 atomic regions from SNP 34235 to 34835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,463 DEBUG Processing 470/857 atomic regions from SNP 140709 to 141309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,537 DEBUG Processing 96/705 atomic regions from SNP 28530 to 29130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,597 DEBUG Processing 153/748 atomic regions from SNP 45647 to 46247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,612 DEBUG Processing 116/732 atomic regions from SNP 34535 to 35135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,705 DEBUG Processing 471/857 atomic regions from SNP 141009 to 141609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,774 DEBUG Processing 97/705 atomic regions from SNP 28830 to 29430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,830 DEBUG Processing 154/748 atomic regions from SNP 45947 to 46547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,851 DEBUG Processing 117/732 atomic regions from SNP 34835 to 35435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,940 DEBUG Processing 472/857 atomic regions from SNP 141309 to 141909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,007 DEBUG Processing 98/705 atomic regions from SNP 29130 to 29730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,059 DEBUG Processing 155/748 atomic regions from SNP 46247 to 46847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,087 DEBUG Processing 118/732 atomic regions from SNP 35135 to 35735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,177 DEBUG Processing 473/857 atomic regions from SNP 141609 to 142209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,242 DEBUG Processing 99/705 atomic regions from SNP 29430 to 30030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,289 DEBUG Processing 156/748 atomic regions from SNP 46547 to 47147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,327 DEBUG Processing 119/732 atomic regions from SNP 35435 to 36035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,408 DEBUG Processing 474/857 atomic regions from SNP 141909 to 142509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,475 DEBUG Processing 100/705 atomic regions from SNP 29730 to 30330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,522 DEBUG Processing 157/748 atomic regions from SNP 46847 to 47447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,559 DEBUG Processing 120/732 atomic regions from SNP 35735 to 36335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,645 DEBUG Processing 475/857 atomic regions from SNP 142209 to 142809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,713 DEBUG Processing 101/705 atomic regions from SNP 30030 to 30630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,757 DEBUG Processing 158/748 atomic regions from SNP 47147 to 47747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,798 DEBUG Processing 121/732 atomic regions from SNP 36035 to 36635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,892 DEBUG Processing 476/857 atomic regions from SNP 142509 to 143109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,957 DEBUG Processing 102/705 atomic regions from SNP 30330 to 30930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,984 DEBUG Processing 159/748 atomic regions from SNP 47447 to 48047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,036 DEBUG Processing 122/732 atomic regions from SNP 36335 to 36935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,129 DEBUG Processing 477/857 atomic regions from SNP 142809 to 143409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,197 DEBUG Processing 103/705 atomic regions from SNP 30630 to 31230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,212 DEBUG Processing 160/748 atomic regions from SNP 47747 to 48347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,279 DEBUG Processing 123/732 atomic regions from SNP 36635 to 37235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,374 DEBUG Processing 478/857 atomic regions from SNP 143109 to 143709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,437 DEBUG Processing 104/705 atomic regions from SNP 30930 to 31530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,446 DEBUG Processing 161/748 atomic regions from SNP 48047 to 48647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,545 DEBUG Processing 124/732 atomic regions from SNP 36935 to 37535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,645 DEBUG Processing 479/857 atomic regions from SNP 143409 to 144009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,686 DEBUG Processing 105/705 atomic regions from SNP 31230 to 31830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,690 DEBUG Processing 162/748 atomic regions from SNP 48347 to 48947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,801 DEBUG Processing 125/732 atomic regions from SNP 37235 to 37835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,894 DEBUG Processing 480/857 atomic regions from SNP 143709 to 144309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,923 DEBUG Processing 163/748 atomic regions from SNP 48647 to 49247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,928 DEBUG Processing 106/705 atomic regions from SNP 31530 to 32130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,047 DEBUG Processing 126/732 atomic regions from SNP 37535 to 38135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,154 DEBUG Processing 164/748 atomic regions from SNP 48947 to 49547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,156 DEBUG Processing 481/857 atomic regions from SNP 144009 to 144609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,167 DEBUG Processing 107/705 atomic regions from SNP 31830 to 32430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,301 DEBUG Processing 127/732 atomic regions from SNP 37835 to 38435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,388 DEBUG Processing 165/748 atomic regions from SNP 49247 to 49847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,406 DEBUG Processing 108/705 atomic regions from SNP 32130 to 32730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,433 DEBUG Processing 482/857 atomic regions from SNP 144309 to 144909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,541 DEBUG Processing 128/732 atomic regions from SNP 38135 to 38735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,616 DEBUG Processing 166/748 atomic regions from SNP 49547 to 50147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,660 DEBUG Processing 109/705 atomic regions from SNP 32430 to 33030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,694 DEBUG Processing 483/857 atomic regions from SNP 144609 to 145209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,767 DEBUG Processing 129/732 atomic regions from SNP 38435 to 39035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,843 DEBUG Processing 167/748 atomic regions from SNP 49847 to 50447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,935 DEBUG Processing 110/705 atomic regions from SNP 32730 to 33330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,967 DEBUG Processing 484/857 atomic regions from SNP 144909 to 145509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,001 DEBUG Processing 130/732 atomic regions from SNP 38735 to 39335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,066 DEBUG Processing 168/748 atomic regions from SNP 50147 to 50747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,200 DEBUG Processing 111/705 atomic regions from SNP 33030 to 33630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,238 DEBUG Processing 131/732 atomic regions from SNP 39035 to 39635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,251 DEBUG Processing 485/857 atomic regions from SNP 145209 to 145809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,291 DEBUG Processing 169/748 atomic regions from SNP 50447 to 51047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,460 DEBUG Processing 112/705 atomic regions from SNP 33330 to 33930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,480 DEBUG Processing 132/732 atomic regions from SNP 39335 to 39935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,522 DEBUG Processing 170/748 atomic regions from SNP 50747 to 51347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,530 DEBUG Processing 486/857 atomic regions from SNP 145509 to 146109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,730 DEBUG Processing 113/705 atomic regions from SNP 33630 to 34230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,742 DEBUG Processing 133/732 atomic regions from SNP 39635 to 40235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,751 DEBUG Processing 171/748 atomic regions from SNP 51047 to 51647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,801 DEBUG Processing 487/857 atomic regions from SNP 145809 to 146409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,971 DEBUG Processing 172/748 atomic regions from SNP 51347 to 51947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,989 DEBUG Processing 114/705 atomic regions from SNP 33930 to 34530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,991 DEBUG Processing 134/732 atomic regions from SNP 39935 to 40535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,060 DEBUG Processing 488/857 atomic regions from SNP 146109 to 146709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,193 DEBUG Processing 173/748 atomic regions from SNP 51647 to 52247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,223 DEBUG Processing 135/732 atomic regions from SNP 40235 to 40835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,252 DEBUG Processing 115/705 atomic regions from SNP 34230 to 34830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,325 DEBUG Processing 489/857 atomic regions from SNP 146409 to 147009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,414 DEBUG Processing 174/748 atomic regions from SNP 51947 to 52547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,452 DEBUG Processing 136/732 atomic regions from SNP 40535 to 41135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,518 DEBUG Processing 116/705 atomic regions from SNP 34530 to 35130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,581 DEBUG Processing 490/857 atomic regions from SNP 146709 to 147309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,629 DEBUG Processing 175/748 atomic regions from SNP 52247 to 52847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,680 DEBUG Processing 137/732 atomic regions from SNP 40835 to 41435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,780 DEBUG Processing 117/705 atomic regions from SNP 34830 to 35430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,827 DEBUG Processing 491/857 atomic regions from SNP 147009 to 147609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,851 DEBUG Processing 176/748 atomic regions from SNP 52547 to 53147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,908 DEBUG Processing 138/732 atomic regions from SNP 41135 to 41735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,050 DEBUG Processing 118/705 atomic regions from SNP 35130 to 35730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,082 DEBUG Processing 177/748 atomic regions from SNP 52847 to 53447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,092 DEBUG Processing 492/857 atomic regions from SNP 147309 to 147909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,144 DEBUG Processing 139/732 atomic regions from SNP 41435 to 42035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,311 DEBUG Processing 178/748 atomic regions from SNP 53147 to 53747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,318 DEBUG Processing 119/705 atomic regions from SNP 35430 to 36030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,361 DEBUG Processing 140/732 atomic regions from SNP 41735 to 42335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,368 DEBUG Processing 493/857 atomic regions from SNP 147609 to 148209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,530 DEBUG Processing 179/748 atomic regions from SNP 53447 to 54047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,558 DEBUG Processing 120/705 atomic regions from SNP 35730 to 36330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,575 DEBUG Processing 141/732 atomic regions from SNP 42035 to 42635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,636 DEBUG Processing 494/857 atomic regions from SNP 147909 to 148509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,746 DEBUG Processing 180/748 atomic regions from SNP 53747 to 54347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,785 DEBUG Processing 121/705 atomic regions from SNP 36030 to 36630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,787 DEBUG Processing 142/732 atomic regions from SNP 42335 to 42935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,894 DEBUG Processing 495/857 atomic regions from SNP 148209 to 148809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,963 DEBUG Processing 181/748 atomic regions from SNP 54047 to 54647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,996 DEBUG Processing 143/732 atomic regions from SNP 42635 to 43235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,007 DEBUG Processing 122/705 atomic regions from SNP 36330 to 36930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,151 DEBUG Processing 496/857 atomic regions from SNP 148509 to 149109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,184 DEBUG Processing 182/748 atomic regions from SNP 54347 to 54947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,206 DEBUG Processing 144/732 atomic regions from SNP 42935 to 43535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,232 DEBUG Processing 123/705 atomic regions from SNP 36630 to 37230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,400 DEBUG Processing 497/857 atomic regions from SNP 148809 to 149409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,403 DEBUG Processing 183/748 atomic regions from SNP 54647 to 55247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,415 DEBUG Processing 145/732 atomic regions from SNP 43235 to 43835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,464 DEBUG Processing 124/705 atomic regions from SNP 36930 to 37530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,616 DEBUG Processing 184/748 atomic regions from SNP 54947 to 55547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,620 DEBUG Processing 146/732 atomic regions from SNP 43535 to 44135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,653 DEBUG Processing 498/857 atomic regions from SNP 149109 to 149709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,718 DEBUG Processing 125/705 atomic regions from SNP 37230 to 37830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,826 DEBUG Processing 147/732 atomic regions from SNP 43835 to 44435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,826 DEBUG Processing 185/748 atomic regions from SNP 55247 to 55847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,909 DEBUG Processing 499/857 atomic regions from SNP 149409 to 150009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,977 DEBUG Processing 126/705 atomic regions from SNP 37530 to 38130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,031 DEBUG Processing 148/732 atomic regions from SNP 44135 to 44735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,038 DEBUG Processing 186/748 atomic regions from SNP 55547 to 56147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,184 DEBUG Processing 500/857 atomic regions from SNP 149709 to 150309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,221 DEBUG Processing 127/705 atomic regions from SNP 37830 to 38430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,242 DEBUG Processing 149/732 atomic regions from SNP 44435 to 45035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,253 DEBUG Processing 187/748 atomic regions from SNP 55847 to 56447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,442 DEBUG Processing 501/857 atomic regions from SNP 150009 to 150609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,447 DEBUG Processing 128/705 atomic regions from SNP 38130 to 38730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,462 DEBUG Processing 150/732 atomic regions from SNP 44735 to 45335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,472 DEBUG Processing 188/748 atomic regions from SNP 56147 to 56747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,673 DEBUG Processing 502/857 atomic regions from SNP 150309 to 150909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,680 DEBUG Processing 129/705 atomic regions from SNP 38430 to 39030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,684 DEBUG Processing 151/732 atomic regions from SNP 45035 to 45635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,692 DEBUG Processing 189/748 atomic regions from SNP 56447 to 57047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,896 DEBUG Processing 152/732 atomic regions from SNP 45335 to 45935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,907 DEBUG Processing 130/705 atomic regions from SNP 38730 to 39330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,910 DEBUG Processing 190/748 atomic regions from SNP 56747 to 57347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,928 DEBUG Processing 503/857 atomic regions from SNP 150609 to 151209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,103 DEBUG Processing 153/732 atomic regions from SNP 45635 to 46235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,129 DEBUG Processing 191/748 atomic regions from SNP 57047 to 57647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,133 DEBUG Processing 131/705 atomic regions from SNP 39030 to 39630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,176 DEBUG Processing 504/857 atomic regions from SNP 150909 to 151509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,309 DEBUG Processing 154/732 atomic regions from SNP 45935 to 46535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,349 DEBUG Processing 192/748 atomic regions from SNP 57347 to 57947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,361 DEBUG Processing 132/705 atomic regions from SNP 39330 to 39930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,437 DEBUG Processing 505/857 atomic regions from SNP 151209 to 151809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,512 DEBUG Processing 155/732 atomic regions from SNP 46235 to 46835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,571 DEBUG Processing 193/748 atomic regions from SNP 57647 to 58247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,588 DEBUG Processing 133/705 atomic regions from SNP 39630 to 40230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,676 DEBUG Processing 506/857 atomic regions from SNP 151509 to 152109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,720 DEBUG Processing 156/732 atomic regions from SNP 46535 to 47135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,794 DEBUG Processing 194/748 atomic regions from SNP 57947 to 58547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,818 DEBUG Processing 134/705 atomic regions from SNP 39930 to 40530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,913 DEBUG Processing 507/857 atomic regions from SNP 151809 to 152409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,928 DEBUG Processing 157/732 atomic regions from SNP 46835 to 47435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,015 DEBUG Processing 195/748 atomic regions from SNP 58247 to 58847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,050 DEBUG Processing 135/705 atomic regions from SNP 40230 to 40830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,138 DEBUG Processing 158/732 atomic regions from SNP 47135 to 47735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,145 DEBUG Processing 508/857 atomic regions from SNP 152109 to 152709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,236 DEBUG Processing 196/748 atomic regions from SNP 58547 to 59147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,289 DEBUG Processing 136/705 atomic regions from SNP 40530 to 41130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,355 DEBUG Processing 159/732 atomic regions from SNP 47435 to 48035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,383 DEBUG Processing 509/857 atomic regions from SNP 152409 to 153009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,455 DEBUG Processing 197/748 atomic regions from SNP 58847 to 59447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,536 DEBUG Processing 137/705 atomic regions from SNP 40830 to 41430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,571 DEBUG Processing 160/732 atomic regions from SNP 47735 to 48335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,640 DEBUG Processing 510/857 atomic regions from SNP 152709 to 153309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,678 DEBUG Processing 198/748 atomic regions from SNP 59147 to 59747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,777 DEBUG Processing 138/705 atomic regions from SNP 41130 to 41730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,787 DEBUG Processing 161/732 atomic regions from SNP 48035 to 48635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,900 DEBUG Processing 199/748 atomic regions from SNP 59447 to 60047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,909 DEBUG Processing 511/857 atomic regions from SNP 153009 to 153609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,997 DEBUG Processing 162/732 atomic regions from SNP 48335 to 48935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,002 DEBUG Processing 139/705 atomic regions from SNP 41430 to 42030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,122 DEBUG Processing 200/748 atomic regions from SNP 59747 to 60347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,160 DEBUG Processing 512/857 atomic regions from SNP 153309 to 153909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,212 DEBUG Processing 163/732 atomic regions from SNP 48635 to 49235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,226 DEBUG Processing 140/705 atomic regions from SNP 41730 to 42330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,346 DEBUG Processing 201/748 atomic regions from SNP 60047 to 60647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,424 DEBUG Processing 164/732 atomic regions from SNP 48935 to 49535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,431 DEBUG Processing 513/857 atomic regions from SNP 153609 to 154209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,454 DEBUG Processing 141/705 atomic regions from SNP 42030 to 42630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,568 DEBUG Processing 202/748 atomic regions from SNP 60347 to 60947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,640 DEBUG Processing 165/732 atomic regions from SNP 49235 to 49835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,696 DEBUG Processing 142/705 atomic regions from SNP 42330 to 42930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,699 DEBUG Processing 514/857 atomic regions from SNP 153909 to 154509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,788 DEBUG Processing 203/748 atomic regions from SNP 60647 to 61247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,861 DEBUG Processing 166/732 atomic regions from SNP 49535 to 50135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,926 DEBUG Processing 143/705 atomic regions from SNP 42630 to 43230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,969 DEBUG Processing 515/857 atomic regions from SNP 154209 to 154809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,032 DEBUG Processing 204/748 atomic regions from SNP 60947 to 61547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,088 DEBUG Processing 167/732 atomic regions from SNP 49835 to 50435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,156 DEBUG Processing 144/705 atomic regions from SNP 42930 to 43530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,234 DEBUG Processing 516/857 atomic regions from SNP 154509 to 155109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,254 DEBUG Processing 205/748 atomic regions from SNP 61247 to 61847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,306 DEBUG Processing 168/732 atomic regions from SNP 50135 to 50735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,381 DEBUG Processing 145/705 atomic regions from SNP 43230 to 43830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,478 DEBUG Processing 206/748 atomic regions from SNP 61547 to 62147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,499 DEBUG Processing 517/857 atomic regions from SNP 154809 to 155409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,527 DEBUG Processing 169/732 atomic regions from SNP 50435 to 51035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,616 DEBUG Processing 146/705 atomic regions from SNP 43530 to 44130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,708 DEBUG Processing 207/748 atomic regions from SNP 61847 to 62447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,758 DEBUG Processing 518/857 atomic regions from SNP 155109 to 155709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,762 DEBUG Processing 170/732 atomic regions from SNP 50735 to 51335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,846 DEBUG Processing 147/705 atomic regions from SNP 43830 to 44430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,934 DEBUG Processing 208/748 atomic regions from SNP 62147 to 62747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,009 DEBUG Processing 171/732 atomic regions from SNP 51035 to 51635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,020 DEBUG Processing 519/857 atomic regions from SNP 155409 to 156009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,075 DEBUG Processing 148/705 atomic regions from SNP 44130 to 44730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,156 DEBUG Processing 209/748 atomic regions from SNP 62447 to 63047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,252 DEBUG Processing 172/732 atomic regions from SNP 51335 to 51935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,286 DEBUG Processing 520/857 atomic regions from SNP 155709 to 156309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,306 DEBUG Processing 149/705 atomic regions from SNP 44430 to 45030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,376 DEBUG Processing 210/748 atomic regions from SNP 62747 to 63347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,493 DEBUG Processing 173/732 atomic regions from SNP 51635 to 52235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,531 DEBUG Processing 521/857 atomic regions from SNP 156009 to 156609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,539 DEBUG Processing 150/705 atomic regions from SNP 44730 to 45330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,593 DEBUG Processing 211/748 atomic regions from SNP 63047 to 63647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,725 DEBUG Processing 174/732 atomic regions from SNP 51935 to 52535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,773 DEBUG Processing 151/705 atomic regions from SNP 45030 to 45630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,774 DEBUG Processing 522/857 atomic regions from SNP 156309 to 156909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,812 DEBUG Processing 212/748 atomic regions from SNP 63347 to 63947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,939 DEBUG Processing 175/732 atomic regions from SNP 52235 to 52835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,002 DEBUG Processing 152/705 atomic regions from SNP 45330 to 45930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,014 DEBUG Processing 523/857 atomic regions from SNP 156609 to 157209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,027 DEBUG Processing 213/748 atomic regions from SNP 63647 to 64247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,155 DEBUG Processing 176/732 atomic regions from SNP 52535 to 53135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,234 DEBUG Processing 153/705 atomic regions from SNP 45630 to 46230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,256 DEBUG Processing 524/857 atomic regions from SNP 156909 to 157509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,271 DEBUG Processing 214/748 atomic regions from SNP 63947 to 64547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,393 DEBUG Processing 177/732 atomic regions from SNP 52835 to 53435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,477 DEBUG Processing 154/705 atomic regions from SNP 45930 to 46530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,502 DEBUG Processing 525/857 atomic regions from SNP 157209 to 157809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,508 DEBUG Processing 215/748 atomic regions from SNP 64247 to 64847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,602 DEBUG Processing 178/732 atomic regions from SNP 53135 to 53735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,709 DEBUG Processing 155/705 atomic regions from SNP 46230 to 46830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,733 DEBUG Processing 216/748 atomic regions from SNP 64547 to 65147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,743 DEBUG Processing 526/857 atomic regions from SNP 157509 to 158109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,812 DEBUG Processing 179/732 atomic regions from SNP 53435 to 54035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,939 DEBUG Processing 156/705 atomic regions from SNP 46530 to 47130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,982 DEBUG Processing 217/748 atomic regions from SNP 64847 to 65447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,986 DEBUG Processing 527/857 atomic regions from SNP 157809 to 158409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,024 DEBUG Processing 180/732 atomic regions from SNP 53735 to 54335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,184 DEBUG Processing 157/705 atomic regions from SNP 46830 to 47430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,245 DEBUG Processing 528/857 atomic regions from SNP 158109 to 158709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,259 DEBUG Processing 218/748 atomic regions from SNP 65147 to 65747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,261 DEBUG Processing 181/732 atomic regions from SNP 54035 to 54635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,412 DEBUG Processing 158/705 atomic regions from SNP 47130 to 47730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,466 DEBUG Processing 182/732 atomic regions from SNP 54335 to 54935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,482 DEBUG Processing 529/857 atomic regions from SNP 158409 to 159009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,482 DEBUG Processing 219/748 atomic regions from SNP 65447 to 66047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,639 DEBUG Processing 159/705 atomic regions from SNP 47430 to 48030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,677 DEBUG Processing 183/732 atomic regions from SNP 54635 to 55235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,696 DEBUG Processing 220/748 atomic regions from SNP 65747 to 66347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,716 DEBUG Processing 530/857 atomic regions from SNP 158709 to 159309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,872 DEBUG Processing 160/705 atomic regions from SNP 47730 to 48330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,897 DEBUG Processing 184/732 atomic regions from SNP 54935 to 55535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,916 DEBUG Processing 221/748 atomic regions from SNP 66047 to 66647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,952 DEBUG Processing 531/857 atomic regions from SNP 159009 to 159609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,104 DEBUG Processing 161/705 atomic regions from SNP 48030 to 48630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,112 DEBUG Processing 185/732 atomic regions from SNP 55235 to 55835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,136 DEBUG Processing 222/748 atomic regions from SNP 66347 to 66947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,190 DEBUG Processing 532/857 atomic regions from SNP 159309 to 159909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,339 DEBUG Processing 162/705 atomic regions from SNP 48330 to 48930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,341 DEBUG Processing 186/732 atomic regions from SNP 55535 to 56135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,358 DEBUG Processing 223/748 atomic regions from SNP 66647 to 67247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,431 DEBUG Processing 533/857 atomic regions from SNP 159609 to 160209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,560 DEBUG Processing 163/705 atomic regions from SNP 48630 to 49230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,577 DEBUG Processing 187/732 atomic regions from SNP 55835 to 56435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,589 DEBUG Processing 224/748 atomic regions from SNP 66947 to 67547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,673 DEBUG Processing 534/857 atomic regions from SNP 159909 to 160509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,787 DEBUG Processing 164/705 atomic regions from SNP 48930 to 49530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,790 DEBUG Processing 188/732 atomic regions from SNP 56135 to 56735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,840 DEBUG Processing 225/748 atomic regions from SNP 67247 to 67847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,923 DEBUG Processing 535/857 atomic regions from SNP 160209 to 160809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,000 DEBUG Processing 189/732 atomic regions from SNP 56435 to 57035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,011 DEBUG Processing 165/705 atomic regions from SNP 49230 to 49830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,074 DEBUG Processing 226/748 atomic regions from SNP 67547 to 68147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,195 DEBUG Processing 536/857 atomic regions from SNP 160509 to 161109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,204 DEBUG Processing 190/732 atomic regions from SNP 56735 to 57335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,237 DEBUG Processing 166/705 atomic regions from SNP 49530 to 50130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,302 DEBUG Processing 227/748 atomic regions from SNP 67847 to 68447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,408 DEBUG Processing 191/732 atomic regions from SNP 57035 to 57635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,449 DEBUG Processing 537/857 atomic regions from SNP 160809 to 161409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,464 DEBUG Processing 167/705 atomic regions from SNP 49830 to 50430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,544 DEBUG Processing 228/748 atomic regions from SNP 68147 to 68747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,615 DEBUG Processing 192/732 atomic regions from SNP 57335 to 57935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,691 DEBUG Processing 168/705 atomic regions from SNP 50130 to 50730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,706 DEBUG Processing 538/857 atomic regions from SNP 161109 to 161709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,771 DEBUG Processing 229/748 atomic regions from SNP 68447 to 69047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,816 DEBUG Processing 193/732 atomic regions from SNP 57635 to 58235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,915 DEBUG Processing 169/705 atomic regions from SNP 50430 to 51030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,947 DEBUG Processing 539/857 atomic regions from SNP 161409 to 162009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,025 DEBUG Processing 230/748 atomic regions from SNP 68747 to 69347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,027 DEBUG Processing 194/732 atomic regions from SNP 57935 to 58535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,150 DEBUG Processing 170/705 atomic regions from SNP 50730 to 51330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,195 DEBUG Processing 540/857 atomic regions from SNP 161709 to 162309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,241 DEBUG Processing 195/732 atomic regions from SNP 58235 to 58835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,288 DEBUG Processing 231/748 atomic regions from SNP 69047 to 69647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,384 DEBUG Processing 171/705 atomic regions from SNP 51030 to 51630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,435 DEBUG Processing 541/857 atomic regions from SNP 162009 to 162609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,451 DEBUG Processing 196/732 atomic regions from SNP 58535 to 59135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,544 DEBUG Processing 232/748 atomic regions from SNP 69347 to 69947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,605 DEBUG Processing 172/705 atomic regions from SNP 51330 to 51930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,662 DEBUG Processing 197/732 atomic regions from SNP 58835 to 59435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,665 DEBUG Processing 542/857 atomic regions from SNP 162309 to 162909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,775 DEBUG Processing 233/748 atomic regions from SNP 69647 to 70247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,829 DEBUG Processing 173/705 atomic regions from SNP 51630 to 52230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,881 DEBUG Processing 198/732 atomic regions from SNP 59135 to 59735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,903 DEBUG Processing 543/857 atomic regions from SNP 162609 to 163209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,997 DEBUG Processing 234/748 atomic regions from SNP 69947 to 70547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,058 DEBUG Processing 174/705 atomic regions from SNP 51930 to 52530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,099 DEBUG Processing 199/732 atomic regions from SNP 59435 to 60035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,143 DEBUG Processing 544/857 atomic regions from SNP 162909 to 163509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,221 DEBUG Processing 235/748 atomic regions from SNP 70247 to 70847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,283 DEBUG Processing 175/705 atomic regions from SNP 52230 to 52830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,321 DEBUG Processing 200/732 atomic regions from SNP 59735 to 60335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,386 DEBUG Processing 545/857 atomic regions from SNP 163209 to 163809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,444 DEBUG Processing 236/748 atomic regions from SNP 70547 to 71147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,529 DEBUG Processing 176/705 atomic regions from SNP 52530 to 53130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,541 DEBUG Processing 201/732 atomic regions from SNP 60035 to 60635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,629 DEBUG Processing 546/857 atomic regions from SNP 163509 to 164109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,683 DEBUG Processing 237/748 atomic regions from SNP 70847 to 71447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,758 DEBUG Processing 202/732 atomic regions from SNP 60335 to 60935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,783 DEBUG Processing 177/705 atomic regions from SNP 52830 to 53430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,870 DEBUG Processing 547/857 atomic regions from SNP 163809 to 164409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,933 DEBUG Processing 238/748 atomic regions from SNP 71147 to 71747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,966 DEBUG Processing 203/732 atomic regions from SNP 60635 to 61235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,008 DEBUG Processing 178/705 atomic regions from SNP 53130 to 53730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,104 DEBUG Processing 548/857 atomic regions from SNP 164109 to 164709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,177 DEBUG Processing 239/748 atomic regions from SNP 71447 to 72047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,179 DEBUG Processing 204/732 atomic regions from SNP 60935 to 61535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,241 DEBUG Processing 179/705 atomic regions from SNP 53430 to 54030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,337 DEBUG Processing 549/857 atomic regions from SNP 164409 to 165009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,391 DEBUG Processing 205/732 atomic regions from SNP 61235 to 61835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,399 DEBUG Processing 240/748 atomic regions from SNP 71747 to 72347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,468 DEBUG Processing 180/705 atomic regions from SNP 53730 to 54330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,575 DEBUG Processing 550/857 atomic regions from SNP 164709 to 165309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,605 DEBUG Processing 206/732 atomic regions from SNP 61535 to 62135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,628 DEBUG Processing 241/748 atomic regions from SNP 72047 to 72647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,719 DEBUG Processing 181/705 atomic regions from SNP 54030 to 54630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,825 DEBUG Processing 207/732 atomic regions from SNP 61835 to 62435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,849 DEBUG Processing 242/748 atomic regions from SNP 72347 to 72947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,852 DEBUG Processing 551/857 atomic regions from SNP 165009 to 165609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,941 DEBUG Processing 182/705 atomic regions from SNP 54330 to 54930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,038 DEBUG Processing 208/732 atomic regions from SNP 62135 to 62735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,067 DEBUG Processing 243/748 atomic regions from SNP 72647 to 73247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,097 DEBUG Processing 552/857 atomic regions from SNP 165309 to 165909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,164 DEBUG Processing 183/705 atomic regions from SNP 54630 to 55230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,252 DEBUG Processing 209/732 atomic regions from SNP 62435 to 63035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,287 DEBUG Processing 244/748 atomic regions from SNP 72947 to 73547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,330 DEBUG Processing 553/857 atomic regions from SNP 165609 to 166209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,386 DEBUG Processing 184/705 atomic regions from SNP 54930 to 55530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,474 DEBUG Processing 210/732 atomic regions from SNP 62735 to 63335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,514 DEBUG Processing 245/748 atomic regions from SNP 73247 to 73847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,567 DEBUG Processing 554/857 atomic regions from SNP 165909 to 166509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,609 DEBUG Processing 185/705 atomic regions from SNP 55230 to 55830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,686 DEBUG Processing 211/732 atomic regions from SNP 63035 to 63635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,740 DEBUG Processing 246/748 atomic regions from SNP 73547 to 74147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,804 DEBUG Processing 555/857 atomic regions from SNP 166209 to 166809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,836 DEBUG Processing 186/705 atomic regions from SNP 55530 to 56130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,901 DEBUG Processing 212/732 atomic regions from SNP 63335 to 63935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,957 DEBUG Processing 247/748 atomic regions from SNP 73847 to 74447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,040 DEBUG Processing 556/857 atomic regions from SNP 166509 to 167109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,060 DEBUG Processing 187/705 atomic regions from SNP 55830 to 56430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,113 DEBUG Processing 213/732 atomic regions from SNP 63635 to 64235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,167 DEBUG Processing 248/748 atomic regions from SNP 74147 to 74747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,278 DEBUG Processing 557/857 atomic regions from SNP 166809 to 167409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,291 DEBUG Processing 188/705 atomic regions from SNP 56130 to 56730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,325 DEBUG Processing 214/732 atomic regions from SNP 63935 to 64535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,378 DEBUG Processing 249/748 atomic regions from SNP 74447 to 75047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,516 DEBUG Processing 558/857 atomic regions from SNP 167109 to 167709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,520 DEBUG Processing 189/705 atomic regions from SNP 56430 to 57030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,540 DEBUG Processing 215/732 atomic regions from SNP 64235 to 64835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,596 DEBUG Processing 250/748 atomic regions from SNP 74747 to 75347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,756 DEBUG Processing 216/732 atomic regions from SNP 64535 to 65135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,764 DEBUG Processing 190/705 atomic regions from SNP 56730 to 57330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,769 DEBUG Processing 559/857 atomic regions from SNP 167409 to 168009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,821 DEBUG Processing 251/748 atomic regions from SNP 75047 to 75647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,970 DEBUG Processing 217/732 atomic regions from SNP 64835 to 65435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,997 DEBUG Processing 191/705 atomic regions from SNP 57030 to 57630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,008 DEBUG Processing 560/857 atomic regions from SNP 167709 to 168309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,045 DEBUG Processing 252/748 atomic regions from SNP 75347 to 75947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,179 DEBUG Processing 218/732 atomic regions from SNP 65135 to 65735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,228 DEBUG Processing 192/705 atomic regions from SNP 57330 to 57930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,250 DEBUG Processing 561/857 atomic regions from SNP 168009 to 168609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,274 DEBUG Processing 253/748 atomic regions from SNP 75647 to 76247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,387 DEBUG Processing 219/732 atomic regions from SNP 65435 to 66035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,455 DEBUG Processing 193/705 atomic regions from SNP 57630 to 58230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,492 DEBUG Processing 562/857 atomic regions from SNP 168309 to 168909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,501 DEBUG Processing 254/748 atomic regions from SNP 75947 to 76547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,593 DEBUG Processing 220/732 atomic regions from SNP 65735 to 66335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,676 DEBUG Processing 194/705 atomic regions from SNP 57930 to 58530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,730 DEBUG Processing 255/748 atomic regions from SNP 76247 to 76847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,735 DEBUG Processing 563/857 atomic regions from SNP 168609 to 169209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,801 DEBUG Processing 221/732 atomic regions from SNP 66035 to 66635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,896 DEBUG Processing 195/705 atomic regions from SNP 58230 to 58830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,955 DEBUG Processing 256/748 atomic regions from SNP 76547 to 77147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,977 DEBUG Processing 564/857 atomic regions from SNP 168909 to 169509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,011 DEBUG Processing 222/732 atomic regions from SNP 66335 to 66935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,112 DEBUG Processing 196/705 atomic regions from SNP 58530 to 59130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,178 DEBUG Processing 257/748 atomic regions from SNP 76847 to 77447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,218 DEBUG Processing 565/857 atomic regions from SNP 169209 to 169809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,226 DEBUG Processing 223/732 atomic regions from SNP 66635 to 67235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,330 DEBUG Processing 197/705 atomic regions from SNP 58830 to 59430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,397 DEBUG Processing 258/748 atomic regions from SNP 77147 to 77747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,439 DEBUG Processing 224/732 atomic regions from SNP 66935 to 67535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,458 DEBUG Processing 566/857 atomic regions from SNP 169509 to 170109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,552 DEBUG Processing 198/705 atomic regions from SNP 59130 to 59730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,613 DEBUG Processing 259/748 atomic regions from SNP 77447 to 78047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,653 DEBUG Processing 225/732 atomic regions from SNP 67235 to 67835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,692 DEBUG Processing 567/857 atomic regions from SNP 169809 to 170409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,777 DEBUG Processing 199/705 atomic regions from SNP 59430 to 60030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,829 DEBUG Processing 260/748 atomic regions from SNP 77747 to 78347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,870 DEBUG Processing 226/732 atomic regions from SNP 67535 to 68135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,923 DEBUG Processing 568/857 atomic regions from SNP 170109 to 170709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,002 DEBUG Processing 200/705 atomic regions from SNP 59730 to 60330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,046 DEBUG Processing 261/748 atomic regions from SNP 78047 to 78647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,080 DEBUG Processing 227/732 atomic regions from SNP 67835 to 68435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,152 DEBUG Processing 569/857 atomic regions from SNP 170409 to 171009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,229 DEBUG Processing 201/705 atomic regions from SNP 60030 to 60630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,265 DEBUG Processing 262/748 atomic regions from SNP 78347 to 78947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,285 DEBUG Processing 228/732 atomic regions from SNP 68135 to 68735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,386 DEBUG Processing 570/857 atomic regions from SNP 170709 to 171309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,456 DEBUG Processing 202/705 atomic regions from SNP 60330 to 60930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,486 DEBUG Processing 263/748 atomic regions from SNP 78647 to 79247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,496 DEBUG Processing 229/732 atomic regions from SNP 68435 to 69035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,627 DEBUG Processing 571/857 atomic regions from SNP 171009 to 171609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,684 DEBUG Processing 203/705 atomic regions from SNP 60630 to 61230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,708 DEBUG Processing 264/748 atomic regions from SNP 78947 to 79547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,709 DEBUG Processing 230/732 atomic regions from SNP 68735 to 69335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,856 DEBUG Processing 572/857 atomic regions from SNP 171309 to 171909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,912 DEBUG Processing 204/705 atomic regions from SNP 60930 to 61530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,926 DEBUG Processing 231/732 atomic regions from SNP 69035 to 69635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,927 DEBUG Processing 265/748 atomic regions from SNP 79247 to 79847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,082 DEBUG Processing 573/857 atomic regions from SNP 171609 to 172209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,134 DEBUG Processing 232/732 atomic regions from SNP 69335 to 69935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,138 DEBUG Processing 205/705 atomic regions from SNP 61230 to 61830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,148 DEBUG Processing 266/748 atomic regions from SNP 79547 to 80147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,314 DEBUG Processing 574/857 atomic regions from SNP 171909 to 172509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,351 DEBUG Processing 233/732 atomic regions from SNP 69635 to 70235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,370 DEBUG Processing 206/705 atomic regions from SNP 61530 to 62130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,374 DEBUG Processing 267/748 atomic regions from SNP 79847 to 80447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,547 DEBUG Processing 575/857 atomic regions from SNP 172209 to 172809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,566 DEBUG Processing 234/732 atomic regions from SNP 69935 to 70535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,600 DEBUG Processing 268/748 atomic regions from SNP 80147 to 80747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,605 DEBUG Processing 207/705 atomic regions from SNP 61830 to 62430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,786 DEBUG Processing 576/857 atomic regions from SNP 172509 to 173109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,787 DEBUG Processing 235/732 atomic regions from SNP 70235 to 70835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,825 DEBUG Processing 269/748 atomic regions from SNP 80447 to 81047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,837 DEBUG Processing 208/705 atomic regions from SNP 62130 to 62730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,996 DEBUG Processing 236/732 atomic regions from SNP 70535 to 71135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,019 DEBUG Processing 577/857 atomic regions from SNP 172809 to 173409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,050 DEBUG Processing 270/748 atomic regions from SNP 80747 to 81347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,069 DEBUG Processing 209/705 atomic regions from SNP 62430 to 63030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,206 DEBUG Processing 237/732 atomic regions from SNP 70835 to 71435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,257 DEBUG Processing 578/857 atomic regions from SNP 173109 to 173709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,279 DEBUG Processing 271/748 atomic regions from SNP 81047 to 81647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,308 DEBUG Processing 210/705 atomic regions from SNP 62730 to 63330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,417 DEBUG Processing 238/732 atomic regions from SNP 71135 to 71735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,501 DEBUG Processing 579/857 atomic regions from SNP 173409 to 174009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,504 DEBUG Processing 272/748 atomic regions from SNP 81347 to 81947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,542 DEBUG Processing 211/705 atomic regions from SNP 63030 to 63630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,627 DEBUG Processing 239/732 atomic regions from SNP 71435 to 72035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,721 DEBUG Processing 273/748 atomic regions from SNP 81647 to 82247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,736 DEBUG Processing 580/857 atomic regions from SNP 173709 to 174309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,767 DEBUG Processing 212/705 atomic regions from SNP 63330 to 63930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,836 DEBUG Processing 240/732 atomic regions from SNP 71735 to 72335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,945 DEBUG Processing 274/748 atomic regions from SNP 81947 to 82547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,981 DEBUG Processing 581/857 atomic regions from SNP 174009 to 174609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,999 DEBUG Processing 213/705 atomic regions from SNP 63630 to 64230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,053 DEBUG Processing 241/732 atomic regions from SNP 72035 to 72635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,166 DEBUG Processing 275/748 atomic regions from SNP 82247 to 82847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,221 DEBUG Processing 582/857 atomic regions from SNP 174309 to 174909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,228 DEBUG Processing 214/705 atomic regions from SNP 63930 to 64530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,271 DEBUG Processing 242/732 atomic regions from SNP 72335 to 72935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,390 DEBUG Processing 276/748 atomic regions from SNP 82547 to 83147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,461 DEBUG Processing 215/705 atomic regions from SNP 64230 to 64830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,465 DEBUG Processing 583/857 atomic regions from SNP 174609 to 175209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,505 DEBUG Processing 243/732 atomic regions from SNP 72635 to 73235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,614 DEBUG Processing 277/748 atomic regions from SNP 82847 to 83447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,697 DEBUG Processing 216/705 atomic regions from SNP 64530 to 65130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,709 DEBUG Processing 584/857 atomic regions from SNP 174909 to 175509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,728 DEBUG Processing 244/732 atomic regions from SNP 72935 to 73535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,832 DEBUG Processing 278/748 atomic regions from SNP 83147 to 83747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,940 DEBUG Processing 217/705 atomic regions from SNP 64830 to 65430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,948 DEBUG Processing 585/857 atomic regions from SNP 175209 to 175809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,961 DEBUG Processing 245/732 atomic regions from SNP 73235 to 73835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,051 DEBUG Processing 279/748 atomic regions from SNP 83447 to 84047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,185 DEBUG Processing 246/732 atomic regions from SNP 73535 to 74135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,186 DEBUG Processing 586/857 atomic regions from SNP 175509 to 176109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,200 DEBUG Processing 218/705 atomic regions from SNP 65130 to 65730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,272 DEBUG Processing 280/748 atomic regions from SNP 83747 to 84347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,395 DEBUG Processing 247/732 atomic regions from SNP 73835 to 74435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,425 DEBUG Processing 587/857 atomic regions from SNP 175809 to 176409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,454 DEBUG Processing 219/705 atomic regions from SNP 65430 to 66030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,492 DEBUG Processing 281/748 atomic regions from SNP 84047 to 84647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,604 DEBUG Processing 248/732 atomic regions from SNP 74135 to 74735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,658 DEBUG Processing 588/857 atomic regions from SNP 176109 to 176709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,680 DEBUG Processing 220/705 atomic regions from SNP 65730 to 66330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,716 DEBUG Processing 282/748 atomic regions from SNP 84347 to 84947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,816 DEBUG Processing 249/732 atomic regions from SNP 74435 to 75035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,898 DEBUG Processing 589/857 atomic regions from SNP 176409 to 177009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,908 DEBUG Processing 221/705 atomic regions from SNP 66030 to 66630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,939 DEBUG Processing 283/748 atomic regions from SNP 84647 to 85247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,023 DEBUG Processing 250/732 atomic regions from SNP 74735 to 75335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,134 DEBUG Processing 590/857 atomic regions from SNP 176709 to 177309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,140 DEBUG Processing 222/705 atomic regions from SNP 66330 to 66930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,162 DEBUG Processing 284/748 atomic regions from SNP 84947 to 85547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,235 DEBUG Processing 251/732 atomic regions from SNP 75035 to 75635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,370 DEBUG Processing 223/705 atomic regions from SNP 66630 to 67230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,373 DEBUG Processing 591/857 atomic regions from SNP 177009 to 177609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,384 DEBUG Processing 285/748 atomic regions from SNP 85247 to 85847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,469 DEBUG Processing 252/732 atomic regions from SNP 75335 to 75935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,599 DEBUG Processing 224/705 atomic regions from SNP 66930 to 67530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,607 DEBUG Processing 286/748 atomic regions from SNP 85547 to 86147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,611 DEBUG Processing 592/857 atomic regions from SNP 177309 to 177909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,690 DEBUG Processing 253/732 atomic regions from SNP 75635 to 76235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,828 DEBUG Processing 287/748 atomic regions from SNP 85847 to 86447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,829 DEBUG Processing 225/705 atomic regions from SNP 67230 to 67830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,847 DEBUG Processing 593/857 atomic regions from SNP 177609 to 178209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,900 DEBUG Processing 254/732 atomic regions from SNP 75935 to 76535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,046 DEBUG Processing 288/748 atomic regions from SNP 86147 to 86747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,061 DEBUG Processing 226/705 atomic regions from SNP 67530 to 68130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,081 DEBUG Processing 594/857 atomic regions from SNP 177909 to 178509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,112 DEBUG Processing 255/732 atomic regions from SNP 76235 to 76835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,265 DEBUG Processing 289/748 atomic regions from SNP 86447 to 87047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,290 DEBUG Processing 227/705 atomic regions from SNP 67830 to 68430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,317 DEBUG Processing 595/857 atomic regions from SNP 178209 to 178809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,326 DEBUG Processing 256/732 atomic regions from SNP 76535 to 77135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,482 DEBUG Processing 290/748 atomic regions from SNP 86747 to 87347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,516 DEBUG Processing 228/705 atomic regions from SNP 68130 to 68730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,538 DEBUG Processing 257/732 atomic regions from SNP 76835 to 77435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,552 DEBUG Processing 596/857 atomic regions from SNP 178509 to 179109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,700 DEBUG Processing 291/748 atomic regions from SNP 87047 to 87647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,739 DEBUG Processing 229/705 atomic regions from SNP 68430 to 69030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,755 DEBUG Processing 258/732 atomic regions from SNP 77135 to 77735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,794 DEBUG Processing 597/857 atomic regions from SNP 178809 to 179409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,922 DEBUG Processing 292/748 atomic regions from SNP 87347 to 87947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,970 DEBUG Processing 259/732 atomic regions from SNP 77435 to 78035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,972 DEBUG Processing 230/705 atomic regions from SNP 68730 to 69330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,030 DEBUG Processing 598/857 atomic regions from SNP 179109 to 179709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,142 DEBUG Processing 293/748 atomic regions from SNP 87647 to 88247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,182 DEBUG Processing 260/732 atomic regions from SNP 77735 to 78335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,213 DEBUG Processing 231/705 atomic regions from SNP 69030 to 69630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,263 DEBUG Processing 599/857 atomic regions from SNP 179409 to 180009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,367 DEBUG Processing 294/748 atomic regions from SNP 87947 to 88547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,391 DEBUG Processing 261/732 atomic regions from SNP 78035 to 78635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,462 DEBUG Processing 232/705 atomic regions from SNP 69330 to 69930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,500 DEBUG Processing 600/857 atomic regions from SNP 179709 to 180309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,585 DEBUG Processing 295/748 atomic regions from SNP 88247 to 88847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,607 DEBUG Processing 262/732 atomic regions from SNP 78335 to 78935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,692 DEBUG Processing 233/705 atomic regions from SNP 69630 to 70230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,738 DEBUG Processing 601/857 atomic regions from SNP 180009 to 180609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,809 DEBUG Processing 296/748 atomic regions from SNP 88547 to 89147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,823 DEBUG Processing 263/732 atomic regions from SNP 78635 to 79235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,921 DEBUG Processing 234/705 atomic regions from SNP 69930 to 70530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,974 DEBUG Processing 602/857 atomic regions from SNP 180309 to 180909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,027 DEBUG Processing 297/748 atomic regions from SNP 88847 to 89447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,036 DEBUG Processing 264/732 atomic regions from SNP 78935 to 79535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,144 DEBUG Processing 235/705 atomic regions from SNP 70230 to 70830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,210 DEBUG Processing 603/857 atomic regions from SNP 180609 to 181209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,246 DEBUG Processing 298/748 atomic regions from SNP 89147 to 89747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,247 DEBUG Processing 265/732 atomic regions from SNP 79235 to 79835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,368 DEBUG Processing 236/705 atomic regions from SNP 70530 to 71130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,451 DEBUG Processing 604/857 atomic regions from SNP 180909 to 181509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,471 DEBUG Processing 266/732 atomic regions from SNP 79535 to 80135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,472 DEBUG Processing 299/748 atomic regions from SNP 89447 to 90047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,597 DEBUG Processing 237/705 atomic regions from SNP 70830 to 71430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,690 DEBUG Processing 605/857 atomic regions from SNP 181209 to 181809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,690 DEBUG Processing 267/732 atomic regions from SNP 79835 to 80435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,696 DEBUG Processing 300/748 atomic regions from SNP 89747 to 90347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,850 DEBUG Processing 238/705 atomic regions from SNP 71130 to 71730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,907 DEBUG Processing 268/732 atomic regions from SNP 80135 to 80735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,920 DEBUG Processing 301/748 atomic regions from SNP 90047 to 90647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,930 DEBUG Processing 606/857 atomic regions from SNP 181509 to 182109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,079 DEBUG Processing 239/705 atomic regions from SNP 71430 to 72030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,122 DEBUG Processing 269/732 atomic regions from SNP 80435 to 81035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,143 DEBUG Processing 302/748 atomic regions from SNP 90347 to 90947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,168 DEBUG Processing 607/857 atomic regions from SNP 181809 to 182409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,311 DEBUG Processing 240/705 atomic regions from SNP 71730 to 72330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,338 DEBUG Processing 270/732 atomic regions from SNP 80735 to 81335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,369 DEBUG Processing 303/748 atomic regions from SNP 90647 to 91247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,411 DEBUG Processing 608/857 atomic regions from SNP 182109 to 182709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,544 DEBUG Processing 241/705 atomic regions from SNP 72030 to 72630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,549 DEBUG Processing 271/732 atomic regions from SNP 81035 to 81635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,592 DEBUG Processing 304/748 atomic regions from SNP 90947 to 91547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,648 DEBUG Processing 609/857 atomic regions from SNP 182409 to 183009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,763 DEBUG Processing 272/732 atomic regions from SNP 81335 to 81935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,792 DEBUG Processing 242/705 atomic regions from SNP 72330 to 72930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,820 DEBUG Processing 305/748 atomic regions from SNP 91247 to 91847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,887 DEBUG Processing 610/857 atomic regions from SNP 182709 to 183309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,975 DEBUG Processing 273/732 atomic regions from SNP 81635 to 82235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,040 DEBUG Processing 243/705 atomic regions from SNP 72630 to 73230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,041 DEBUG Processing 306/748 atomic regions from SNP 91547 to 92147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,123 DEBUG Processing 611/857 atomic regions from SNP 183009 to 183609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,189 DEBUG Processing 274/732 atomic regions from SNP 81935 to 82535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,261 DEBUG Processing 307/748 atomic regions from SNP 91847 to 92447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,269 DEBUG Processing 244/705 atomic regions from SNP 72930 to 73530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,360 DEBUG Processing 612/857 atomic regions from SNP 183309 to 183909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,407 DEBUG Processing 275/732 atomic regions from SNP 82235 to 82835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,483 DEBUG Processing 308/748 atomic regions from SNP 92147 to 92747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,495 DEBUG Processing 245/705 atomic regions from SNP 73230 to 73830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,600 DEBUG Processing 613/857 atomic regions from SNP 183609 to 184209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,625 DEBUG Processing 276/732 atomic regions from SNP 82535 to 83135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,702 DEBUG Processing 309/748 atomic regions from SNP 92447 to 93047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,721 DEBUG Processing 246/705 atomic regions from SNP 73530 to 74130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,842 DEBUG Processing 614/857 atomic regions from SNP 183909 to 184509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,848 DEBUG Processing 277/732 atomic regions from SNP 82835 to 83435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,929 DEBUG Processing 310/748 atomic regions from SNP 92747 to 93347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,952 DEBUG Processing 247/705 atomic regions from SNP 73830 to 74430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,071 DEBUG Processing 278/732 atomic regions from SNP 83135 to 83735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,086 DEBUG Processing 615/857 atomic regions from SNP 184209 to 184809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,165 DEBUG Processing 311/748 atomic regions from SNP 93047 to 93647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,190 DEBUG Processing 248/705 atomic regions from SNP 74130 to 74730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,293 DEBUG Processing 279/732 atomic regions from SNP 83435 to 84035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,339 DEBUG Processing 616/857 atomic regions from SNP 184509 to 185109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,399 DEBUG Processing 312/748 atomic regions from SNP 93347 to 93947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,437 DEBUG Processing 249/705 atomic regions from SNP 74430 to 75030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,556 DEBUG Processing 280/732 atomic regions from SNP 83735 to 84335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,626 DEBUG Processing 617/857 atomic regions from SNP 184809 to 185409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,716 DEBUG Processing 313/748 atomic regions from SNP 93647 to 94247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,751 DEBUG Processing 250/705 atomic regions from SNP 74730 to 75330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,825 DEBUG Processing 281/732 atomic regions from SNP 84035 to 84635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,889 DEBUG Processing 618/857 atomic regions from SNP 185109 to 185709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,946 DEBUG Processing 314/748 atomic regions from SNP 93947 to 94547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,002 DEBUG Processing 251/705 atomic regions from SNP 75030 to 75630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,096 DEBUG Processing 282/732 atomic regions from SNP 84335 to 84935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,167 DEBUG Processing 619/857 atomic regions from SNP 185409 to 186009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,183 DEBUG Processing 315/748 atomic regions from SNP 94247 to 94847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,273 DEBUG Processing 252/705 atomic regions from SNP 75330 to 75930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,372 DEBUG Processing 283/732 atomic regions from SNP 84635 to 85235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,440 DEBUG Processing 316/748 atomic regions from SNP 94547 to 95147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,445 DEBUG Processing 620/857 atomic regions from SNP 185709 to 186309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,505 DEBUG Processing 253/705 atomic regions from SNP 75630 to 76230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,592 DEBUG Processing 284/732 atomic regions from SNP 84935 to 85535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,675 DEBUG Processing 317/748 atomic regions from SNP 94847 to 95447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,699 DEBUG Processing 621/857 atomic regions from SNP 186009 to 186609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,741 DEBUG Processing 254/705 atomic regions from SNP 75930 to 76530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,811 DEBUG Processing 285/732 atomic regions from SNP 85235 to 85835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,906 DEBUG Processing 318/748 atomic regions from SNP 95147 to 95747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,944 DEBUG Processing 622/857 atomic regions from SNP 186309 to 186909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,977 DEBUG Processing 255/705 atomic regions from SNP 76230 to 76830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,024 DEBUG Processing 286/732 atomic regions from SNP 85535 to 86135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,130 DEBUG Processing 319/748 atomic regions from SNP 95447 to 96047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,185 DEBUG Processing 623/857 atomic regions from SNP 186609 to 187209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,210 DEBUG Processing 256/705 atomic regions from SNP 76530 to 77130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,235 DEBUG Processing 287/732 atomic regions from SNP 85835 to 86435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,381 DEBUG Processing 320/748 atomic regions from SNP 95747 to 96347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,430 DEBUG Processing 624/857 atomic regions from SNP 186909 to 187509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,447 DEBUG Processing 257/705 atomic regions from SNP 76830 to 77430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,452 DEBUG Processing 288/732 atomic regions from SNP 86135 to 86735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,615 DEBUG Processing 321/748 atomic regions from SNP 96047 to 96647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,677 DEBUG Processing 289/732 atomic regions from SNP 86435 to 87035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,684 DEBUG Processing 625/857 atomic regions from SNP 187209 to 187809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,690 DEBUG Processing 258/705 atomic regions from SNP 77130 to 77730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,841 DEBUG Processing 322/748 atomic regions from SNP 96347 to 96947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,901 DEBUG Processing 290/732 atomic regions from SNP 86735 to 87335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,936 DEBUG Processing 259/705 atomic regions from SNP 77430 to 78030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,938 DEBUG Processing 626/857 atomic regions from SNP 187509 to 188109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,061 DEBUG Processing 323/748 atomic regions from SNP 96647 to 97247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,121 DEBUG Processing 291/732 atomic regions from SNP 87035 to 87635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,172 DEBUG Processing 260/705 atomic regions from SNP 77730 to 78330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,180 DEBUG Processing 627/857 atomic regions from SNP 187809 to 188409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,278 DEBUG Processing 324/748 atomic regions from SNP 96947 to 97547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,338 DEBUG Processing 292/732 atomic regions from SNP 87335 to 87935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,401 DEBUG Processing 261/705 atomic regions from SNP 78030 to 78630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,419 DEBUG Processing 628/857 atomic regions from SNP 188109 to 188709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,498 DEBUG Processing 325/748 atomic regions from SNP 97247 to 97847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,553 DEBUG Processing 293/732 atomic regions from SNP 87635 to 88235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,641 DEBUG Processing 262/705 atomic regions from SNP 78330 to 78930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,668 DEBUG Processing 629/857 atomic regions from SNP 188409 to 189009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,744 DEBUG Processing 326/748 atomic regions from SNP 97547 to 98147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,763 DEBUG Processing 294/732 atomic regions from SNP 87935 to 88535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,871 DEBUG Processing 263/705 atomic regions from SNP 78630 to 79230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,911 DEBUG Processing 630/857 atomic regions from SNP 188709 to 189309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,964 DEBUG Processing 327/748 atomic regions from SNP 97847 to 98447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,972 DEBUG Processing 295/732 atomic regions from SNP 88235 to 88835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,101 DEBUG Processing 264/705 atomic regions from SNP 78930 to 79530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,156 DEBUG Processing 631/857 atomic regions from SNP 189009 to 189609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,185 DEBUG Processing 296/732 atomic regions from SNP 88535 to 89135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,188 DEBUG Processing 328/748 atomic regions from SNP 98147 to 98747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,327 DEBUG Processing 265/705 atomic regions from SNP 79230 to 79830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,398 DEBUG Processing 297/732 atomic regions from SNP 88835 to 89435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,399 DEBUG Processing 632/857 atomic regions from SNP 189309 to 189909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,430 DEBUG Processing 329/748 atomic regions from SNP 98447 to 99047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,546 DEBUG Processing 266/705 atomic regions from SNP 79530 to 80130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,610 DEBUG Processing 298/732 atomic regions from SNP 89135 to 89735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,635 DEBUG Processing 633/857 atomic regions from SNP 189609 to 190209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,684 DEBUG Processing 330/748 atomic regions from SNP 98747 to 99347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,769 DEBUG Processing 267/705 atomic regions from SNP 79830 to 80430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,821 DEBUG Processing 299/732 atomic regions from SNP 89435 to 90035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,876 DEBUG Processing 634/857 atomic regions from SNP 189909 to 190509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,932 DEBUG Processing 331/748 atomic regions from SNP 99047 to 99647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,989 DEBUG Processing 268/705 atomic regions from SNP 80130 to 80730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,028 DEBUG Processing 300/732 atomic regions from SNP 89735 to 90335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,115 DEBUG Processing 635/857 atomic regions from SNP 190209 to 190809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,177 DEBUG Processing 332/748 atomic regions from SNP 99347 to 99947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,218 DEBUG Processing 269/705 atomic regions from SNP 80430 to 81030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,237 DEBUG Processing 301/732 atomic regions from SNP 90035 to 90635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,357 DEBUG Processing 636/857 atomic regions from SNP 190509 to 191109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,410 DEBUG Processing 333/748 atomic regions from SNP 99647 to 100247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,446 DEBUG Processing 270/705 atomic regions from SNP 80730 to 81330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,447 DEBUG Processing 302/732 atomic regions from SNP 90335 to 90935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,614 DEBUG Processing 637/857 atomic regions from SNP 190809 to 191409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,634 DEBUG Processing 334/748 atomic regions from SNP 99947 to 100547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,664 DEBUG Processing 303/732 atomic regions from SNP 90635 to 91235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,680 DEBUG Processing 271/705 atomic regions from SNP 81030 to 81630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,854 DEBUG Processing 638/857 atomic regions from SNP 191109 to 191709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,862 DEBUG Processing 335/748 atomic regions from SNP 100247 to 100847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,885 DEBUG Processing 304/732 atomic regions from SNP 90935 to 91535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,918 DEBUG Processing 272/705 atomic regions from SNP 81330 to 81930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,091 DEBUG Processing 336/748 atomic regions from SNP 100547 to 101147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,096 DEBUG Processing 639/857 atomic regions from SNP 191409 to 192009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,107 DEBUG Processing 305/732 atomic regions from SNP 91235 to 91835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,162 DEBUG Processing 273/705 atomic regions from SNP 81630 to 82230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,320 DEBUG Processing 337/748 atomic regions from SNP 100847 to 101447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,337 DEBUG Processing 640/857 atomic regions from SNP 191709 to 192309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,340 DEBUG Processing 306/732 atomic regions from SNP 91535 to 92135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,398 DEBUG Processing 274/705 atomic regions from SNP 81930 to 82530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,546 DEBUG Processing 338/748 atomic regions from SNP 101147 to 101747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,575 DEBUG Processing 641/857 atomic regions from SNP 192009 to 192609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,584 DEBUG Processing 307/732 atomic regions from SNP 91835 to 92435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,633 DEBUG Processing 275/705 atomic regions from SNP 82230 to 82830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,790 DEBUG Processing 339/748 atomic regions from SNP 101447 to 102047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,801 DEBUG Processing 308/732 atomic regions from SNP 92135 to 92735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,818 DEBUG Processing 642/857 atomic regions from SNP 192309 to 192909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,898 DEBUG Processing 276/705 atomic regions from SNP 82530 to 83130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,019 DEBUG Processing 309/732 atomic regions from SNP 92435 to 93035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,044 DEBUG Processing 340/748 atomic regions from SNP 101747 to 102347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,078 DEBUG Processing 643/857 atomic regions from SNP 192609 to 193209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,149 DEBUG Processing 277/705 atomic regions from SNP 82830 to 83430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,238 DEBUG Processing 310/732 atomic regions from SNP 92735 to 93335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,292 DEBUG Processing 341/748 atomic regions from SNP 102047 to 102647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,352 DEBUG Processing 644/857 atomic regions from SNP 192909 to 193509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,374 DEBUG Processing 278/705 atomic regions from SNP 83130 to 83730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,456 DEBUG Processing 311/732 atomic regions from SNP 93035 to 93635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,527 DEBUG Processing 342/748 atomic regions from SNP 102347 to 102947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,602 DEBUG Processing 279/705 atomic regions from SNP 83430 to 84030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,619 DEBUG Processing 645/857 atomic regions from SNP 193209 to 193809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,672 DEBUG Processing 312/732 atomic regions from SNP 93335 to 93935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,753 DEBUG Processing 343/748 atomic regions from SNP 102647 to 103247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,829 DEBUG Processing 280/705 atomic regions from SNP 83730 to 84330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,887 DEBUG Processing 646/857 atomic regions from SNP 193509 to 194109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,890 DEBUG Processing 313/732 atomic regions from SNP 93635 to 94235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,990 DEBUG Processing 344/748 atomic regions from SNP 102947 to 103547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,055 DEBUG Processing 281/705 atomic regions from SNP 84030 to 84630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,107 DEBUG Processing 314/732 atomic regions from SNP 93935 to 94535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,167 DEBUG Processing 647/857 atomic regions from SNP 193809 to 194409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,243 DEBUG Processing 345/748 atomic regions from SNP 103247 to 103847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,281 DEBUG Processing 282/705 atomic regions from SNP 84330 to 84930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,320 DEBUG Processing 315/732 atomic regions from SNP 94235 to 94835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,437 DEBUG Processing 648/857 atomic regions from SNP 194109 to 194709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,493 DEBUG Processing 346/748 atomic regions from SNP 103547 to 104147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,504 DEBUG Processing 283/705 atomic regions from SNP 84630 to 85230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,534 DEBUG Processing 316/732 atomic regions from SNP 94535 to 95135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,690 DEBUG Processing 649/857 atomic regions from SNP 194409 to 195009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,727 DEBUG Processing 284/705 atomic regions from SNP 84930 to 85530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,739 DEBUG Processing 347/748 atomic regions from SNP 103847 to 104447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,747 DEBUG Processing 317/732 atomic regions from SNP 94835 to 95435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,922 DEBUG Processing 650/857 atomic regions from SNP 194709 to 195309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,954 DEBUG Processing 285/705 atomic regions from SNP 85230 to 85830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,962 DEBUG Processing 318/732 atomic regions from SNP 95135 to 95735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,978 DEBUG Processing 348/748 atomic regions from SNP 104147 to 104747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,168 DEBUG Processing 651/857 atomic regions from SNP 195009 to 195609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,188 DEBUG Processing 319/732 atomic regions from SNP 95435 to 96035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,190 DEBUG Processing 286/705 atomic regions from SNP 85530 to 86130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,223 DEBUG Processing 349/748 atomic regions from SNP 104447 to 105047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,403 DEBUG Processing 320/732 atomic regions from SNP 95735 to 96335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,408 DEBUG Processing 652/857 atomic regions from SNP 195309 to 195909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,424 DEBUG Processing 287/705 atomic regions from SNP 85830 to 86430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,463 DEBUG Processing 350/748 atomic regions from SNP 104747 to 105347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,616 DEBUG Processing 321/732 atomic regions from SNP 96035 to 96635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,648 DEBUG Processing 653/857 atomic regions from SNP 195609 to 196209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,661 DEBUG Processing 288/705 atomic regions from SNP 86130 to 86730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,705 DEBUG Processing 351/748 atomic regions from SNP 105047 to 105647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,824 DEBUG Processing 322/732 atomic regions from SNP 96335 to 96935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,887 DEBUG Processing 654/857 atomic regions from SNP 195909 to 196509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,908 DEBUG Processing 289/705 atomic regions from SNP 86430 to 87030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,957 DEBUG Processing 352/748 atomic regions from SNP 105347 to 105947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,039 DEBUG Processing 323/732 atomic regions from SNP 96635 to 97235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,132 DEBUG Processing 655/857 atomic regions from SNP 196209 to 196809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,158 DEBUG Processing 290/705 atomic regions from SNP 86730 to 87330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,183 DEBUG Processing 353/748 atomic regions from SNP 105647 to 106247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,255 DEBUG Processing 324/732 atomic regions from SNP 96935 to 97535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,382 DEBUG Processing 656/857 atomic regions from SNP 196509 to 197109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,388 DEBUG Processing 291/705 atomic regions from SNP 87030 to 87630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,406 DEBUG Processing 354/748 atomic regions from SNP 105947 to 106547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,479 DEBUG Processing 325/732 atomic regions from SNP 97235 to 97835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,615 DEBUG Processing 657/857 atomic regions from SNP 196809 to 197409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,615 DEBUG Processing 292/705 atomic regions from SNP 87330 to 87930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,627 DEBUG Processing 355/748 atomic regions from SNP 106247 to 106847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,716 DEBUG Processing 326/732 atomic regions from SNP 97535 to 98135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,847 DEBUG Processing 293/705 atomic regions from SNP 87630 to 88230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,851 DEBUG Processing 356/748 atomic regions from SNP 106547 to 107147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,853 DEBUG Processing 658/857 atomic regions from SNP 197109 to 197709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,931 DEBUG Processing 327/732 atomic regions from SNP 97835 to 98435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,070 DEBUG Processing 357/748 atomic regions from SNP 106847 to 107447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,075 DEBUG Processing 294/705 atomic regions from SNP 87930 to 88530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,100 DEBUG Processing 659/857 atomic regions from SNP 197409 to 198009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,152 DEBUG Processing 328/732 atomic regions from SNP 98135 to 98735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,289 DEBUG Processing 358/748 atomic regions from SNP 107147 to 107747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,304 DEBUG Processing 295/705 atomic regions from SNP 88230 to 88830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,368 DEBUG Processing 660/857 atomic regions from SNP 197709 to 198309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,380 DEBUG Processing 329/732 atomic regions from SNP 98435 to 99035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,509 DEBUG Processing 359/748 atomic regions from SNP 107447 to 108047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,531 DEBUG Processing 296/705 atomic regions from SNP 88530 to 89130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,600 DEBUG Processing 330/732 atomic regions from SNP 98735 to 99335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,643 DEBUG Processing 661/857 atomic regions from SNP 198009 to 198609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,725 DEBUG Processing 360/748 atomic regions from SNP 107747 to 108347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,753 DEBUG Processing 297/705 atomic regions from SNP 88830 to 89430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,819 DEBUG Processing 331/732 atomic regions from SNP 99035 to 99635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,920 DEBUG Processing 662/857 atomic regions from SNP 198309 to 198909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,943 DEBUG Processing 361/748 atomic regions from SNP 108047 to 108647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,976 DEBUG Processing 298/705 atomic regions from SNP 89130 to 89730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,032 DEBUG Processing 332/732 atomic regions from SNP 99335 to 99935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,167 DEBUG Processing 362/748 atomic regions from SNP 108347 to 108947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,176 DEBUG Processing 663/857 atomic regions from SNP 198609 to 199209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,202 DEBUG Processing 299/705 atomic regions from SNP 89430 to 90030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,250 DEBUG Processing 333/732 atomic regions from SNP 99635 to 100235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,393 DEBUG Processing 363/748 atomic regions from SNP 108647 to 109247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,427 DEBUG Processing 664/857 atomic regions from SNP 198909 to 199509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,440 DEBUG Processing 300/705 atomic regions from SNP 89730 to 90330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,472 DEBUG Processing 334/732 atomic regions from SNP 99935 to 100535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,618 DEBUG Processing 364/748 atomic regions from SNP 108947 to 109547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,671 DEBUG Processing 665/857 atomic regions from SNP 199209 to 199809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,677 DEBUG Processing 301/705 atomic regions from SNP 90030 to 90630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,693 DEBUG Processing 335/732 atomic regions from SNP 100235 to 100835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,842 DEBUG Processing 365/748 atomic regions from SNP 109247 to 109847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,909 DEBUG Processing 336/732 atomic regions from SNP 100535 to 101135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,914 DEBUG Processing 302/705 atomic regions from SNP 90330 to 90930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,917 DEBUG Processing 666/857 atomic regions from SNP 199509 to 200109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,064 DEBUG Processing 366/748 atomic regions from SNP 109547 to 110147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,126 DEBUG Processing 337/732 atomic regions from SNP 100835 to 101435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,146 DEBUG Processing 303/705 atomic regions from SNP 90630 to 91230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,156 DEBUG Processing 667/857 atomic regions from SNP 199809 to 200409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,288 DEBUG Processing 367/748 atomic regions from SNP 109847 to 110447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,348 DEBUG Processing 338/732 atomic regions from SNP 101135 to 101735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,377 DEBUG Processing 304/705 atomic regions from SNP 90930 to 91530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,395 DEBUG Processing 668/857 atomic regions from SNP 200109 to 200709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,512 DEBUG Processing 368/748 atomic regions from SNP 110147 to 110747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,566 DEBUG Processing 339/732 atomic regions from SNP 101435 to 102035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,605 DEBUG Processing 305/705 atomic regions from SNP 91230 to 91830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,628 DEBUG Processing 669/857 atomic regions from SNP 200409 to 201009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,731 DEBUG Processing 369/748 atomic regions from SNP 110447 to 111047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,782 DEBUG Processing 340/732 atomic regions from SNP 101735 to 102335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,834 DEBUG Processing 306/705 atomic regions from SNP 91530 to 92130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,868 DEBUG Processing 670/857 atomic regions from SNP 200709 to 201309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,951 DEBUG Processing 370/748 atomic regions from SNP 110747 to 111347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,997 DEBUG Processing 341/732 atomic regions from SNP 102035 to 102635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,058 DEBUG Processing 307/705 atomic regions from SNP 91830 to 92430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,103 DEBUG Processing 671/857 atomic regions from SNP 201009 to 201609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,172 DEBUG Processing 371/748 atomic regions from SNP 111047 to 111647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,208 DEBUG Processing 342/732 atomic regions from SNP 102335 to 102935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,296 DEBUG Processing 308/705 atomic regions from SNP 92130 to 92730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,338 DEBUG Processing 672/857 atomic regions from SNP 201309 to 201909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,392 DEBUG Processing 372/748 atomic regions from SNP 111347 to 111947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,420 DEBUG Processing 343/732 atomic regions from SNP 102635 to 103235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,525 DEBUG Processing 309/705 atomic regions from SNP 92430 to 93030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,599 DEBUG Processing 673/857 atomic regions from SNP 201609 to 202209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,615 DEBUG Processing 373/748 atomic regions from SNP 111647 to 112247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,629 DEBUG Processing 344/732 atomic regions from SNP 102935 to 103535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,777 DEBUG Processing 310/705 atomic regions from SNP 92730 to 93330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,836 DEBUG Processing 374/748 atomic regions from SNP 111947 to 112547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,836 DEBUG Processing 345/732 atomic regions from SNP 103235 to 103835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,864 DEBUG Processing 674/857 atomic regions from SNP 201909 to 202509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,028 DEBUG Processing 311/705 atomic regions from SNP 93030 to 93630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,045 DEBUG Processing 346/732 atomic regions from SNP 103535 to 104135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,057 DEBUG Processing 375/748 atomic regions from SNP 112247 to 112847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,107 DEBUG Processing 675/857 atomic regions from SNP 202209 to 202809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,254 DEBUG Processing 347/732 atomic regions from SNP 103835 to 104435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,269 DEBUG Processing 312/705 atomic regions from SNP 93330 to 93930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,280 DEBUG Processing 376/748 atomic regions from SNP 112547 to 113147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,351 DEBUG Processing 676/857 atomic regions from SNP 202509 to 203109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,466 DEBUG Processing 348/732 atomic regions from SNP 104135 to 104735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,500 DEBUG Processing 377/748 atomic regions from SNP 112847 to 113447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,517 DEBUG Processing 313/705 atomic regions from SNP 93630 to 94230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,596 DEBUG Processing 677/857 atomic regions from SNP 202809 to 203409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,682 DEBUG Processing 349/732 atomic regions from SNP 104435 to 105035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,721 DEBUG Processing 378/748 atomic regions from SNP 113147 to 113747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,752 DEBUG Processing 314/705 atomic regions from SNP 93930 to 94530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,840 DEBUG Processing 678/857 atomic regions from SNP 203109 to 203709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,898 DEBUG Processing 350/732 atomic regions from SNP 104735 to 105335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,958 DEBUG Processing 379/748 atomic regions from SNP 113447 to 114047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,006 DEBUG Processing 315/705 atomic regions from SNP 94230 to 94830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,085 DEBUG Processing 679/857 atomic regions from SNP 203409 to 204009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,117 DEBUG Processing 351/732 atomic regions from SNP 105035 to 105635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,173 DEBUG Processing 380/748 atomic regions from SNP 113747 to 114347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,272 DEBUG Processing 316/705 atomic regions from SNP 94530 to 95130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,332 DEBUG Processing 680/857 atomic regions from SNP 203709 to 204309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,337 DEBUG Processing 352/732 atomic regions from SNP 105335 to 105935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,391 DEBUG Processing 381/748 atomic regions from SNP 114047 to 114647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,547 DEBUG Processing 317/705 atomic regions from SNP 94830 to 95430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,559 DEBUG Processing 353/732 atomic regions from SNP 105635 to 106235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,576 DEBUG Processing 681/857 atomic regions from SNP 204009 to 204609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,613 DEBUG Processing 382/748 atomic regions from SNP 114347 to 114947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,775 DEBUG Processing 354/732 atomic regions from SNP 105935 to 106535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,810 DEBUG Processing 318/705 atomic regions from SNP 95130 to 95730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,839 DEBUG Processing 383/748 atomic regions from SNP 114647 to 115247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,840 DEBUG Processing 682/857 atomic regions from SNP 204309 to 204909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,991 DEBUG Processing 355/732 atomic regions from SNP 106235 to 106835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,061 DEBUG Processing 319/705 atomic regions from SNP 95430 to 96030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,076 DEBUG Processing 384/748 atomic regions from SNP 114947 to 115547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,121 DEBUG Processing 683/857 atomic regions from SNP 204609 to 205209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,205 DEBUG Processing 356/732 atomic regions from SNP 106535 to 107135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,309 DEBUG Processing 385/748 atomic regions from SNP 115247 to 115847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,313 DEBUG Processing 320/705 atomic regions from SNP 95730 to 96330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,389 DEBUG Processing 684/857 atomic regions from SNP 204909 to 205509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,416 DEBUG Processing 357/732 atomic regions from SNP 106835 to 107435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,543 DEBUG Processing 386/748 atomic regions from SNP 115547 to 116147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,572 DEBUG Processing 321/705 atomic regions from SNP 96030 to 96630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,627 DEBUG Processing 358/732 atomic regions from SNP 107135 to 107735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,632 DEBUG Processing 685/857 atomic regions from SNP 205209 to 205809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,775 DEBUG Processing 387/748 atomic regions from SNP 115847 to 116447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,827 DEBUG Processing 322/705 atomic regions from SNP 96330 to 96930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,844 DEBUG Processing 359/732 atomic regions from SNP 107435 to 108035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,873 DEBUG Processing 686/857 atomic regions from SNP 205509 to 206109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,004 DEBUG Processing 388/748 atomic regions from SNP 116147 to 116747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,058 DEBUG Processing 360/732 atomic regions from SNP 107735 to 108335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,069 DEBUG Processing 323/705 atomic regions from SNP 96630 to 97230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,131 DEBUG Processing 687/857 atomic regions from SNP 205809 to 206409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,226 DEBUG Processing 389/748 atomic regions from SNP 116447 to 117047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,274 DEBUG Processing 361/732 atomic regions from SNP 108035 to 108635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,303 DEBUG Processing 324/705 atomic regions from SNP 96930 to 97530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,399 DEBUG Processing 688/857 atomic regions from SNP 206109 to 206709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,456 DEBUG Processing 390/748 atomic regions from SNP 116747 to 117347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,484 DEBUG Processing 362/732 atomic regions from SNP 108335 to 108935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,540 DEBUG Processing 325/705 atomic regions from SNP 97230 to 97830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,667 DEBUG Processing 689/857 atomic regions from SNP 206409 to 207009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,694 DEBUG Processing 363/732 atomic regions from SNP 108635 to 109235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,705 DEBUG Processing 391/748 atomic regions from SNP 117047 to 117647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,770 DEBUG Processing 326/705 atomic regions from SNP 97530 to 98130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,902 DEBUG Processing 364/732 atomic regions from SNP 108935 to 109535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,937 DEBUG Processing 392/748 atomic regions from SNP 117347 to 117947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,937 DEBUG Processing 690/857 atomic regions from SNP 206709 to 207309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,004 DEBUG Processing 327/705 atomic regions from SNP 97830 to 98430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,114 DEBUG Processing 365/732 atomic regions from SNP 109235 to 109835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,165 DEBUG Processing 393/748 atomic regions from SNP 117647 to 118247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,211 DEBUG Processing 691/857 atomic regions from SNP 207009 to 207609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,238 DEBUG Processing 328/705 atomic regions from SNP 98130 to 98730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,318 DEBUG Processing 366/732 atomic regions from SNP 109535 to 110135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,391 DEBUG Processing 394/748 atomic regions from SNP 117947 to 118547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,472 DEBUG Processing 329/705 atomic regions from SNP 98430 to 99030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,487 DEBUG Processing 692/857 atomic regions from SNP 207309 to 207909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,524 DEBUG Processing 367/732 atomic regions from SNP 109835 to 110435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,617 DEBUG Processing 395/748 atomic regions from SNP 118247 to 118847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,702 DEBUG Processing 330/705 atomic regions from SNP 98730 to 99330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,731 DEBUG Processing 368/732 atomic regions from SNP 110135 to 110735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,757 DEBUG Processing 693/857 atomic regions from SNP 207609 to 208209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,843 DEBUG Processing 396/748 atomic regions from SNP 118547 to 119147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,927 DEBUG Processing 331/705 atomic regions from SNP 99030 to 99630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,938 DEBUG Processing 369/732 atomic regions from SNP 110435 to 111035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,021 DEBUG Processing 694/857 atomic regions from SNP 207909 to 208509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,071 DEBUG Processing 397/748 atomic regions from SNP 118847 to 119447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,151 DEBUG Processing 370/732 atomic regions from SNP 110735 to 111335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,156 DEBUG Processing 332/705 atomic regions from SNP 99330 to 99930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,264 DEBUG Processing 695/857 atomic regions from SNP 208209 to 208809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,317 DEBUG Processing 398/748 atomic regions from SNP 119147 to 119747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,361 DEBUG Processing 371/732 atomic regions from SNP 111035 to 111635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,384 DEBUG Processing 333/705 atomic regions from SNP 99630 to 100230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,499 DEBUG Processing 696/857 atomic regions from SNP 208509 to 209109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,569 DEBUG Processing 399/748 atomic regions from SNP 119447 to 120047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,574 DEBUG Processing 372/732 atomic regions from SNP 111335 to 111935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,613 DEBUG Processing 334/705 atomic regions from SNP 99930 to 100530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,733 DEBUG Processing 697/857 atomic regions from SNP 208809 to 209409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,786 DEBUG Processing 373/732 atomic regions from SNP 111635 to 112235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,797 DEBUG Processing 400/748 atomic regions from SNP 119747 to 120347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,845 DEBUG Processing 335/705 atomic regions from SNP 100230 to 100830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,968 DEBUG Processing 698/857 atomic regions from SNP 209109 to 209709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,995 DEBUG Processing 374/732 atomic regions from SNP 111935 to 112535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,025 DEBUG Processing 401/748 atomic regions from SNP 120047 to 120647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,076 DEBUG Processing 336/705 atomic regions from SNP 100530 to 101130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,201 DEBUG Processing 699/857 atomic regions from SNP 209409 to 210009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,202 DEBUG Processing 375/732 atomic regions from SNP 112235 to 112835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,248 DEBUG Processing 402/748 atomic regions from SNP 120347 to 120947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,309 DEBUG Processing 337/705 atomic regions from SNP 100830 to 101430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,436 DEBUG Processing 376/732 atomic regions from SNP 112535 to 113135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,458 DEBUG Processing 700/857 atomic regions from SNP 209709 to 210309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,471 DEBUG Processing 403/748 atomic regions from SNP 120647 to 121247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,545 DEBUG Processing 338/705 atomic regions from SNP 101130 to 101730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,673 DEBUG Processing 377/732 atomic regions from SNP 112835 to 113435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,699 DEBUG Processing 404/748 atomic regions from SNP 120947 to 121547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,712 DEBUG Processing 701/857 atomic regions from SNP 210009 to 210609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,784 DEBUG Processing 339/705 atomic regions from SNP 101430 to 102030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,917 DEBUG Processing 378/732 atomic regions from SNP 113135 to 113735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,925 DEBUG Processing 405/748 atomic regions from SNP 121247 to 121847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,972 DEBUG Processing 702/857 atomic regions from SNP 210309 to 210909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,015 DEBUG Processing 340/705 atomic regions from SNP 101730 to 102330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,155 DEBUG Processing 406/748 atomic regions from SNP 121547 to 122147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,166 DEBUG Processing 379/732 atomic regions from SNP 113435 to 114035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,237 DEBUG Processing 703/857 atomic regions from SNP 210609 to 211209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,248 DEBUG Processing 341/705 atomic regions from SNP 102030 to 102630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,379 DEBUG Processing 407/748 atomic regions from SNP 121847 to 122447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,413 DEBUG Processing 380/732 atomic regions from SNP 113735 to 114335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,493 DEBUG Processing 342/705 atomic regions from SNP 102330 to 102930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,506 DEBUG Processing 704/857 atomic regions from SNP 210909 to 211509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,608 DEBUG Processing 408/748 atomic regions from SNP 122147 to 122747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,664 DEBUG Processing 381/732 atomic regions from SNP 114035 to 114635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,745 DEBUG Processing 705/857 atomic regions from SNP 211209 to 211809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,746 DEBUG Processing 343/705 atomic regions from SNP 102630 to 103230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,838 DEBUG Processing 409/748 atomic regions from SNP 122447 to 123047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,917 DEBUG Processing 382/732 atomic regions from SNP 114335 to 114935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,986 DEBUG Processing 706/857 atomic regions from SNP 211509 to 212109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,994 DEBUG Processing 344/705 atomic regions from SNP 102930 to 103530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,071 DEBUG Processing 410/748 atomic regions from SNP 122747 to 123347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,164 DEBUG Processing 383/732 atomic regions from SNP 114635 to 115235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,226 DEBUG Processing 707/857 atomic regions from SNP 211809 to 212409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,227 DEBUG Processing 345/705 atomic regions from SNP 103230 to 103830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,301 DEBUG Processing 411/748 atomic regions from SNP 123047 to 123647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,378 DEBUG Processing 384/732 atomic regions from SNP 114935 to 115535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,461 DEBUG Processing 346/705 atomic regions from SNP 103530 to 104130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,469 DEBUG Processing 708/857 atomic regions from SNP 212109 to 212709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,534 DEBUG Processing 412/748 atomic regions from SNP 123347 to 123947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,621 DEBUG Processing 385/732 atomic regions from SNP 115235 to 115835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,695 DEBUG Processing 347/705 atomic regions from SNP 103830 to 104430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,706 DEBUG Processing 709/857 atomic regions from SNP 212409 to 213009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,763 DEBUG Processing 413/748 atomic regions from SNP 123647 to 124247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,874 DEBUG Processing 386/732 atomic regions from SNP 115535 to 116135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,926 DEBUG Processing 348/705 atomic regions from SNP 104130 to 104730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,947 DEBUG Processing 710/857 atomic regions from SNP 212709 to 213309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,996 DEBUG Processing 414/748 atomic regions from SNP 123947 to 124547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,117 DEBUG Processing 387/732 atomic regions from SNP 115835 to 116435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,160 DEBUG Processing 349/705 atomic regions from SNP 104430 to 105030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,213 DEBUG Processing 711/857 atomic regions from SNP 213009 to 213609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,227 DEBUG Processing 415/748 atomic regions from SNP 124247 to 124847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,328 DEBUG Processing 388/732 atomic regions from SNP 116135 to 116735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,394 DEBUG Processing 350/705 atomic regions from SNP 104730 to 105330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,459 DEBUG Processing 416/748 atomic regions from SNP 124547 to 125147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,482 DEBUG Processing 712/857 atomic regions from SNP 213309 to 213909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,536 DEBUG Processing 389/732 atomic regions from SNP 116435 to 117035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,626 DEBUG Processing 351/705 atomic regions from SNP 105030 to 105630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,689 DEBUG Processing 417/748 atomic regions from SNP 124847 to 125447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,759 DEBUG Processing 713/857 atomic regions from SNP 213609 to 214209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,759 DEBUG Processing 390/732 atomic regions from SNP 116735 to 117335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,860 DEBUG Processing 352/705 atomic regions from SNP 105330 to 105930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,916 DEBUG Processing 418/748 atomic regions from SNP 125147 to 125747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,991 DEBUG Processing 391/732 atomic regions from SNP 117035 to 117635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,032 DEBUG Processing 714/857 atomic regions from SNP 213909 to 214509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,094 DEBUG Processing 353/705 atomic regions from SNP 105630 to 106230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,141 DEBUG Processing 419/748 atomic regions from SNP 125447 to 126047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,237 DEBUG Processing 392/732 atomic regions from SNP 117335 to 117935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,305 DEBUG Processing 715/857 atomic regions from SNP 214209 to 214809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,332 DEBUG Processing 354/705 atomic regions from SNP 105930 to 106530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,371 DEBUG Processing 420/748 atomic regions from SNP 125747 to 126347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,455 DEBUG Processing 393/732 atomic regions from SNP 117635 to 118235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,569 DEBUG Processing 355/705 atomic regions from SNP 106230 to 106830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,575 DEBUG Processing 716/857 atomic regions from SNP 214509 to 215109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,599 DEBUG Processing 421/748 atomic regions from SNP 126047 to 126647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,664 DEBUG Processing 394/732 atomic regions from SNP 117935 to 118535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,815 DEBUG Processing 356/705 atomic regions from SNP 106530 to 107130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,837 DEBUG Processing 422/748 atomic regions from SNP 126347 to 126947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,848 DEBUG Processing 717/857 atomic regions from SNP 214809 to 215409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,875 DEBUG Processing 395/732 atomic regions from SNP 118235 to 118835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,054 DEBUG Processing 357/705 atomic regions from SNP 106830 to 107430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,086 DEBUG Processing 423/748 atomic regions from SNP 126647 to 127247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,089 DEBUG Processing 396/732 atomic regions from SNP 118535 to 119135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,105 DEBUG Processing 718/857 atomic regions from SNP 215109 to 215709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,283 DEBUG Processing 358/705 atomic regions from SNP 107130 to 107730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,298 DEBUG Processing 397/732 atomic regions from SNP 118835 to 119435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,339 DEBUG Processing 424/748 atomic regions from SNP 126947 to 127547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,346 DEBUG Processing 719/857 atomic regions from SNP 215409 to 216009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,510 DEBUG Processing 359/705 atomic regions from SNP 107430 to 108030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,511 DEBUG Processing 398/732 atomic regions from SNP 119135 to 119735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,582 DEBUG Processing 720/857 atomic regions from SNP 215709 to 216309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,595 DEBUG Processing 425/748 atomic regions from SNP 127247 to 127847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,726 DEBUG Processing 399/732 atomic regions from SNP 119435 to 120035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,736 DEBUG Processing 360/705 atomic regions from SNP 107730 to 108330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,821 DEBUG Processing 721/857 atomic regions from SNP 216009 to 216609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,832 DEBUG Processing 426/748 atomic regions from SNP 127547 to 128147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,943 DEBUG Processing 400/732 atomic regions from SNP 119735 to 120335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,964 DEBUG Processing 361/705 atomic regions from SNP 108030 to 108630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,057 DEBUG Processing 722/857 atomic regions from SNP 216309 to 216909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,057 DEBUG Processing 427/748 atomic regions from SNP 127847 to 128447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,161 DEBUG Processing 401/732 atomic regions from SNP 120035 to 120635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,194 DEBUG Processing 362/705 atomic regions from SNP 108330 to 108930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,292 DEBUG Processing 428/748 atomic regions from SNP 128147 to 128747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,292 DEBUG Processing 723/857 atomic regions from SNP 216609 to 217209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,376 DEBUG Processing 402/732 atomic regions from SNP 120335 to 120935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,422 DEBUG Processing 363/705 atomic regions from SNP 108630 to 109230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,530 DEBUG Processing 724/857 atomic regions from SNP 216909 to 217509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,536 DEBUG Processing 429/748 atomic regions from SNP 128447 to 129047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,588 DEBUG Processing 403/732 atomic regions from SNP 120635 to 121235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,648 DEBUG Processing 364/705 atomic regions from SNP 108930 to 109530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,759 DEBUG Processing 430/748 atomic regions from SNP 128747 to 129347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,766 DEBUG Processing 725/857 atomic regions from SNP 217209 to 217809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,794 DEBUG Processing 404/732 atomic regions from SNP 120935 to 121535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,877 DEBUG Processing 365/705 atomic regions from SNP 109230 to 109830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,981 DEBUG Processing 431/748 atomic regions from SNP 129047 to 129647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,000 DEBUG Processing 726/857 atomic regions from SNP 217509 to 218109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,027 DEBUG Processing 405/732 atomic regions from SNP 121235 to 121835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,108 DEBUG Processing 366/705 atomic regions from SNP 109530 to 110130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,227 DEBUG Processing 432/748 atomic regions from SNP 129347 to 129947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,237 DEBUG Processing 727/857 atomic regions from SNP 217809 to 218409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,260 DEBUG Processing 406/732 atomic regions from SNP 121535 to 122135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,336 DEBUG Processing 367/705 atomic regions from SNP 109830 to 110430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,467 DEBUG Processing 407/732 atomic regions from SNP 121835 to 122435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,471 DEBUG Processing 728/857 atomic regions from SNP 218109 to 218709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,473 DEBUG Processing 433/748 atomic regions from SNP 129647 to 130247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,566 DEBUG Processing 368/705 atomic regions from SNP 110130 to 110730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,674 DEBUG Processing 408/732 atomic regions from SNP 122135 to 122735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,709 DEBUG Processing 729/857 atomic regions from SNP 218409 to 219009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,713 DEBUG Processing 434/748 atomic regions from SNP 129947 to 130547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,801 DEBUG Processing 369/705 atomic regions from SNP 110430 to 111030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,884 DEBUG Processing 409/732 atomic regions from SNP 122435 to 123035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,950 DEBUG Processing 435/748 atomic regions from SNP 130247 to 130847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,967 DEBUG Processing 730/857 atomic regions from SNP 218709 to 219309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,041 DEBUG Processing 370/705 atomic regions from SNP 110730 to 111330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,095 DEBUG Processing 410/732 atomic regions from SNP 122735 to 123335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,204 DEBUG Processing 436/748 atomic regions from SNP 130547 to 131147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,228 DEBUG Processing 731/857 atomic regions from SNP 219009 to 219609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,275 DEBUG Processing 371/705 atomic regions from SNP 111030 to 111630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,310 DEBUG Processing 411/732 atomic regions from SNP 123035 to 123635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,432 DEBUG Processing 437/748 atomic regions from SNP 130847 to 131447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,474 DEBUG Processing 732/857 atomic regions from SNP 219309 to 219909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,508 DEBUG Processing 372/705 atomic regions from SNP 111330 to 111930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,530 DEBUG Processing 412/732 atomic regions from SNP 123335 to 123935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,681 DEBUG Processing 438/748 atomic regions from SNP 131147 to 131747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,717 DEBUG Processing 733/857 atomic regions from SNP 219609 to 220209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,752 DEBUG Processing 373/705 atomic regions from SNP 111630 to 112230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,763 DEBUG Processing 413/732 atomic regions from SNP 123635 to 124235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,930 DEBUG Processing 439/748 atomic regions from SNP 131447 to 132047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,960 DEBUG Processing 734/857 atomic regions from SNP 219909 to 220509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,995 DEBUG Processing 414/732 atomic regions from SNP 123935 to 124535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,011 DEBUG Processing 374/705 atomic regions from SNP 111930 to 112530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,175 DEBUG Processing 440/748 atomic regions from SNP 131747 to 132347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,218 DEBUG Processing 735/857 atomic regions from SNP 220209 to 220809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,222 DEBUG Processing 415/732 atomic regions from SNP 124235 to 124835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,248 DEBUG Processing 375/705 atomic regions from SNP 112230 to 112830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,421 DEBUG Processing 441/748 atomic regions from SNP 132047 to 132647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,446 DEBUG Processing 416/732 atomic regions from SNP 124535 to 125135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,482 DEBUG Processing 376/705 atomic regions from SNP 112530 to 113130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,490 DEBUG Processing 736/857 atomic regions from SNP 220509 to 221109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,647 DEBUG Processing 442/748 atomic regions from SNP 132347 to 132947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,676 DEBUG Processing 417/732 atomic regions from SNP 124835 to 125435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,721 DEBUG Processing 377/705 atomic regions from SNP 112830 to 113430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,732 DEBUG Processing 737/857 atomic regions from SNP 220809 to 221409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,870 DEBUG Processing 443/748 atomic regions from SNP 132647 to 133247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,902 DEBUG Processing 418/732 atomic regions from SNP 125135 to 125735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,953 DEBUG Processing 378/705 atomic regions from SNP 113130 to 113730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,998 DEBUG Processing 738/857 atomic regions from SNP 221109 to 221709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,093 DEBUG Processing 444/748 atomic regions from SNP 132947 to 133547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,134 DEBUG Processing 419/732 atomic regions from SNP 125435 to 126035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,190 DEBUG Processing 379/705 atomic regions from SNP 113430 to 114030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,255 DEBUG Processing 739/857 atomic regions from SNP 221409 to 222009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,321 DEBUG Processing 445/748 atomic regions from SNP 133247 to 133847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,357 DEBUG Processing 420/732 atomic regions from SNP 125735 to 126335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,424 DEBUG Processing 380/705 atomic regions from SNP 113730 to 114330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,498 DEBUG Processing 740/857 atomic regions from SNP 221709 to 222309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,550 DEBUG Processing 446/748 atomic regions from SNP 133547 to 134147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,577 DEBUG Processing 421/732 atomic regions from SNP 126035 to 126635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,657 DEBUG Processing 381/705 atomic regions from SNP 114030 to 114630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,738 DEBUG Processing 741/857 atomic regions from SNP 222009 to 222609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,793 DEBUG Processing 447/748 atomic regions from SNP 133847 to 134447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,793 DEBUG Processing 422/732 atomic regions from SNP 126335 to 126935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,879 DEBUG Processing 382/705 atomic regions from SNP 114330 to 114930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,981 DEBUG Processing 742/857 atomic regions from SNP 222309 to 222909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,024 DEBUG Processing 423/732 atomic regions from SNP 126635 to 127235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,057 DEBUG Processing 448/748 atomic regions from SNP 134147 to 134747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,105 DEBUG Processing 383/705 atomic regions from SNP 114630 to 115230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,230 DEBUG Processing 743/857 atomic regions from SNP 222609 to 223209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,243 DEBUG Processing 424/732 atomic regions from SNP 126935 to 127535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,327 DEBUG Processing 449/748 atomic regions from SNP 134447 to 135047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,341 DEBUG Processing 384/705 atomic regions from SNP 114930 to 115530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,468 DEBUG Processing 425/732 atomic regions from SNP 127235 to 127835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,487 DEBUG Processing 744/857 atomic regions from SNP 222909 to 223509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,575 DEBUG Processing 385/705 atomic regions from SNP 115230 to 115830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,589 DEBUG Processing 450/748 atomic regions from SNP 134747 to 135347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,685 DEBUG Processing 426/732 atomic regions from SNP 127535 to 128135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,732 DEBUG Processing 745/857 atomic regions from SNP 223209 to 223809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,809 DEBUG Processing 386/705 atomic regions from SNP 115530 to 116130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,852 DEBUG Processing 451/748 atomic regions from SNP 135047 to 135647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,911 DEBUG Processing 427/732 atomic regions from SNP 127835 to 128435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,980 DEBUG Processing 746/857 atomic regions from SNP 223509 to 224109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,046 DEBUG Processing 387/705 atomic regions from SNP 115830 to 116430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,119 DEBUG Processing 452/748 atomic regions from SNP 135347 to 135947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,130 DEBUG Processing 428/732 atomic regions from SNP 128135 to 128735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,218 DEBUG Processing 747/857 atomic regions from SNP 223809 to 224409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,279 DEBUG Processing 388/705 atomic regions from SNP 116130 to 116730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,348 DEBUG Processing 429/732 atomic regions from SNP 128435 to 129035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,385 DEBUG Processing 453/748 atomic regions from SNP 135647 to 136247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,459 DEBUG Processing 748/857 atomic regions from SNP 224109 to 224709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,514 DEBUG Processing 389/705 atomic regions from SNP 116430 to 117030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,567 DEBUG Processing 430/732 atomic regions from SNP 128735 to 129335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,653 DEBUG Processing 454/748 atomic regions from SNP 135947 to 136547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,712 DEBUG Processing 749/857 atomic regions from SNP 224409 to 225009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,777 DEBUG Processing 390/705 atomic regions from SNP 116730 to 117330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,787 DEBUG Processing 431/732 atomic regions from SNP 129035 to 129635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,927 DEBUG Processing 455/748 atomic regions from SNP 136247 to 136847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,960 DEBUG Processing 750/857 atomic regions from SNP 224709 to 225309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,012 DEBUG Processing 432/732 atomic regions from SNP 129335 to 129935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,036 DEBUG Processing 391/705 atomic regions from SNP 117030 to 117630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,197 DEBUG Processing 456/748 atomic regions from SNP 136547 to 137147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,208 DEBUG Processing 751/857 atomic regions from SNP 225009 to 225609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,237 DEBUG Processing 433/732 atomic regions from SNP 129635 to 130235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,276 DEBUG Processing 392/705 atomic regions from SNP 117330 to 117930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,455 DEBUG Processing 434/732 atomic regions from SNP 129935 to 130535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,457 DEBUG Processing 752/857 atomic regions from SNP 225309 to 225909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,465 DEBUG Processing 457/748 atomic regions from SNP 136847 to 137447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,524 DEBUG Processing 393/705 atomic regions from SNP 117630 to 118230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,667 DEBUG Processing 435/732 atomic regions from SNP 130235 to 130835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,693 DEBUG Processing 753/857 atomic regions from SNP 225609 to 226209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,719 DEBUG Processing 458/748 atomic regions from SNP 137147 to 137747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,753 DEBUG Processing 394/705 atomic regions from SNP 117930 to 118530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,879 DEBUG Processing 436/732 atomic regions from SNP 130535 to 131135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,924 DEBUG Processing 754/857 atomic regions from SNP 225909 to 226509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,979 DEBUG Processing 459/748 atomic regions from SNP 137447 to 138047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,990 DEBUG Processing 395/705 atomic regions from SNP 118230 to 118830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,096 DEBUG Processing 437/732 atomic regions from SNP 130835 to 131435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,156 DEBUG Processing 755/857 atomic regions from SNP 226209 to 226809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,227 DEBUG Processing 396/705 atomic regions from SNP 118530 to 119130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,240 DEBUG Processing 460/748 atomic regions from SNP 137747 to 138347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,331 DEBUG Processing 438/732 atomic regions from SNP 131135 to 131735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,391 DEBUG Processing 756/857 atomic regions from SNP 226509 to 227109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,466 DEBUG Processing 397/705 atomic regions from SNP 118830 to 119430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,485 DEBUG Processing 461/748 atomic regions from SNP 138047 to 138647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,558 DEBUG Processing 439/732 atomic regions from SNP 131435 to 132035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,622 DEBUG Processing 757/857 atomic regions from SNP 226809 to 227409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,705 DEBUG Processing 398/705 atomic regions from SNP 119130 to 119730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,716 DEBUG Processing 462/748 atomic regions from SNP 138347 to 138947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,800 DEBUG Processing 440/732 atomic regions from SNP 131735 to 132335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,855 DEBUG Processing 758/857 atomic regions from SNP 227109 to 227709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,939 DEBUG Processing 399/705 atomic regions from SNP 119430 to 120030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,942 DEBUG Processing 463/748 atomic regions from SNP 138647 to 139247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,019 DEBUG Processing 441/732 atomic regions from SNP 132035 to 132635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,099 DEBUG Processing 759/857 atomic regions from SNP 227409 to 228009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,184 DEBUG Processing 400/705 atomic regions from SNP 119730 to 120330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,191 DEBUG Processing 464/748 atomic regions from SNP 138947 to 139547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,239 DEBUG Processing 442/732 atomic regions from SNP 132335 to 132935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,344 DEBUG Processing 760/857 atomic regions from SNP 227709 to 228309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,414 DEBUG Processing 401/705 atomic regions from SNP 120030 to 120630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,436 DEBUG Processing 465/748 atomic regions from SNP 139247 to 139847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,462 DEBUG Processing 443/732 atomic regions from SNP 132635 to 133235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,550 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:51:08,582 DEBUG Processing 761/857 atomic regions from SNP 228009 to 228609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,648 DEBUG Processing 402/705 atomic regions from SNP 120330 to 120930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,679 DEBUG Processing 466/748 atomic regions from SNP 139547 to 140147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,685 DEBUG Processing 444/732 atomic regions from SNP 132935 to 133535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,823 DEBUG Processing 762/857 atomic regions from SNP 228309 to 228909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,884 DEBUG Processing 403/705 atomic regions from SNP 120630 to 121230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,910 DEBUG Processing 467/748 atomic regions from SNP 139847 to 140447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,910 DEBUG Processing 445/732 atomic regions from SNP 133235 to 133835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,064 DEBUG Processing 763/857 atomic regions from SNP 228609 to 229209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,124 DEBUG Processing 404/705 atomic regions from SNP 120930 to 121530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,136 DEBUG Processing 446/732 atomic regions from SNP 133535 to 134135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,142 DEBUG Processing 468/748 atomic regions from SNP 140147 to 140747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,300 DEBUG Processing 764/857 atomic regions from SNP 228909 to 229509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,364 DEBUG Processing 405/705 atomic regions from SNP 121230 to 121830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,364 DEBUG Processing 447/732 atomic regions from SNP 133835 to 134435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,376 DEBUG Processing 469/748 atomic regions from SNP 140447 to 141047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,538 DEBUG Processing 765/857 atomic regions from SNP 229209 to 229809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,594 DEBUG Processing 448/732 atomic regions from SNP 134135 to 134735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,606 DEBUG Processing 406/705 atomic regions from SNP 121530 to 122130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,611 DEBUG Processing 470/748 atomic regions from SNP 140747 to 141347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,781 DEBUG Processing 766/857 atomic regions from SNP 229509 to 230109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,817 DEBUG Processing 449/732 atomic regions from SNP 134435 to 135035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,844 DEBUG Processing 471/748 atomic regions from SNP 141047 to 141647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,849 DEBUG Processing 407/705 atomic regions from SNP 121830 to 122430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,017 DEBUG Processing 767/857 atomic regions from SNP 229809 to 230409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,036 DEBUG Processing 450/732 atomic regions from SNP 134735 to 135335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,074 DEBUG Processing 472/748 atomic regions from SNP 141347 to 141947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,084 DEBUG Processing 408/705 atomic regions from SNP 122130 to 122730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,250 DEBUG Processing 451/732 atomic regions from SNP 135035 to 135635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,255 DEBUG Processing 768/857 atomic regions from SNP 230109 to 230709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,301 DEBUG Processing 473/748 atomic regions from SNP 141647 to 142247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,318 DEBUG Processing 409/705 atomic regions from SNP 122430 to 123030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,467 DEBUG Processing 452/732 atomic regions from SNP 135335 to 135935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,513 DEBUG Processing 769/857 atomic regions from SNP 230409 to 231009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,529 DEBUG Processing 474/748 atomic regions from SNP 141947 to 142547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,553 DEBUG Processing 410/705 atomic regions from SNP 122730 to 123330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,685 DEBUG Processing 453/732 atomic regions from SNP 135635 to 136235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,756 DEBUG Processing 475/748 atomic regions from SNP 142247 to 142847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,791 DEBUG Processing 770/857 atomic regions from SNP 230709 to 231309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,792 DEBUG Processing 411/705 atomic regions from SNP 123030 to 123630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,906 DEBUG Processing 454/732 atomic regions from SNP 135935 to 136535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,003 DEBUG Processing 476/748 atomic regions from SNP 142547 to 143147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,029 DEBUG Processing 412/705 atomic regions from SNP 123330 to 123930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,056 DEBUG Processing 771/857 atomic regions from SNP 231009 to 231609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,149 DEBUG Processing 455/732 atomic regions from SNP 136235 to 136835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,240 DEBUG Processing 477/748 atomic regions from SNP 142847 to 143447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,269 DEBUG Processing 413/705 atomic regions from SNP 123630 to 124230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,322 DEBUG Processing 772/857 atomic regions from SNP 231309 to 231909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,394 DEBUG Processing 456/732 atomic regions from SNP 136535 to 137135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,497 DEBUG Processing 478/748 atomic regions from SNP 143147 to 143747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,509 DEBUG Processing 414/705 atomic regions from SNP 123930 to 124530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,571 DEBUG Processing 773/857 atomic regions from SNP 231609 to 232209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,636 DEBUG Processing 457/732 atomic regions from SNP 136835 to 137435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,732 DEBUG Processing 479/748 atomic regions from SNP 143447 to 144047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,745 DEBUG Processing 415/705 atomic regions from SNP 124230 to 124830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,812 DEBUG Processing 774/857 atomic regions from SNP 231909 to 232509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,894 DEBUG Processing 458/732 atomic regions from SNP 137135 to 137735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,962 DEBUG Processing 480/748 atomic regions from SNP 143747 to 144347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,995 DEBUG Processing 416/705 atomic regions from SNP 124530 to 125130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,055 DEBUG Processing 775/857 atomic regions from SNP 232209 to 232809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,159 DEBUG Processing 459/732 atomic regions from SNP 137435 to 138035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,196 DEBUG Processing 481/748 atomic regions from SNP 144047 to 144647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,243 DEBUG Processing 417/705 atomic regions from SNP 124830 to 125430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,294 DEBUG Processing 776/857 atomic regions from SNP 232509 to 233109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,415 DEBUG Processing 460/732 atomic regions from SNP 137735 to 138335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,427 DEBUG Processing 482/748 atomic regions from SNP 144347 to 144947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,488 DEBUG Processing 418/705 atomic regions from SNP 125130 to 125730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,536 DEBUG Processing 777/857 atomic regions from SNP 232809 to 233409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,646 DEBUG Processing 461/732 atomic regions from SNP 138035 to 138635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,660 DEBUG Processing 483/748 atomic regions from SNP 144647 to 145247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,730 DEBUG Processing 419/705 atomic regions from SNP 125430 to 126030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,780 DEBUG Processing 778/857 atomic regions from SNP 233109 to 233709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,880 DEBUG Processing 462/732 atomic regions from SNP 138335 to 138935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,887 DEBUG Processing 484/748 atomic regions from SNP 144947 to 145547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,962 DEBUG Processing 420/705 atomic regions from SNP 125730 to 126330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,015 DEBUG Processing 779/857 atomic regions from SNP 233409 to 234009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,115 DEBUG Processing 485/748 atomic regions from SNP 145247 to 145847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,133 DEBUG Processing 463/732 atomic regions from SNP 138635 to 139235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,216 DEBUG Processing 421/705 atomic regions from SNP 126030 to 126630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,270 DEBUG Processing 780/857 atomic regions from SNP 233709 to 234309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,341 DEBUG Processing 486/748 atomic regions from SNP 145547 to 146147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,393 DEBUG Processing 464/732 atomic regions from SNP 138935 to 139535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,460 DEBUG Processing 422/705 atomic regions from SNP 126330 to 126930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,517 DEBUG Processing 781/857 atomic regions from SNP 234009 to 234609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,569 DEBUG Processing 487/748 atomic regions from SNP 145847 to 146447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,652 DEBUG Processing 465/732 atomic regions from SNP 139235 to 139835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,704 DEBUG Processing 423/705 atomic regions from SNP 126630 to 127230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,788 DEBUG Processing 782/857 atomic regions from SNP 234309 to 234909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,801 DEBUG Processing 488/748 atomic regions from SNP 146147 to 146747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,903 DEBUG Processing 466/732 atomic regions from SNP 139535 to 140135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,947 DEBUG Processing 424/705 atomic regions from SNP 126930 to 127530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,041 DEBUG Processing 783/857 atomic regions from SNP 234609 to 235209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,041 DEBUG Processing 489/748 atomic regions from SNP 146447 to 147047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,130 DEBUG Processing 467/732 atomic regions from SNP 139835 to 140435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,206 DEBUG Processing 425/705 atomic regions from SNP 127230 to 127830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,270 DEBUG Processing 490/748 atomic regions from SNP 146747 to 147347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,285 DEBUG Processing 784/857 atomic regions from SNP 234909 to 235509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,352 DEBUG Processing 468/732 atomic regions from SNP 140135 to 140735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,457 DEBUG Processing 426/705 atomic regions from SNP 127530 to 128130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,509 DEBUG Processing 491/748 atomic regions from SNP 147047 to 147647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,533 DEBUG Processing 785/857 atomic regions from SNP 235209 to 235809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,569 DEBUG Processing 469/732 atomic regions from SNP 140435 to 141035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,692 DEBUG Processing 427/705 atomic regions from SNP 127830 to 128430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,734 DEBUG Processing 492/748 atomic regions from SNP 147347 to 147947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,772 DEBUG Processing 786/857 atomic regions from SNP 235509 to 236109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,781 DEBUG Processing 470/732 atomic regions from SNP 140735 to 141335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,936 DEBUG Processing 428/705 atomic regions from SNP 128130 to 128730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,957 DEBUG Processing 493/748 atomic regions from SNP 147647 to 148247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,998 DEBUG Processing 471/732 atomic regions from SNP 141035 to 141635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,010 DEBUG Processing 787/857 atomic regions from SNP 235809 to 236409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,179 DEBUG Processing 494/748 atomic regions from SNP 147947 to 148547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,185 DEBUG Processing 429/705 atomic regions from SNP 128430 to 129030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,219 DEBUG Processing 472/732 atomic regions from SNP 141335 to 141935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,253 DEBUG Processing 788/857 atomic regions from SNP 236109 to 236709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,400 DEBUG Processing 495/748 atomic regions from SNP 148247 to 148847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,440 DEBUG Processing 473/732 atomic regions from SNP 141635 to 142235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,444 DEBUG Processing 430/705 atomic regions from SNP 128730 to 129330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,493 DEBUG Processing 789/857 atomic regions from SNP 236409 to 237009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,620 DEBUG Processing 496/748 atomic regions from SNP 148547 to 149147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,656 DEBUG Processing 474/732 atomic regions from SNP 141935 to 142535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,682 DEBUG Processing 431/705 atomic regions from SNP 129030 to 129630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,732 DEBUG Processing 790/857 atomic regions from SNP 236709 to 237309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,835 DEBUG Processing 497/748 atomic regions from SNP 148847 to 149447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,875 DEBUG Processing 475/732 atomic regions from SNP 142235 to 142835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,913 DEBUG Processing 432/705 atomic regions from SNP 129330 to 129930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,971 DEBUG Processing 791/857 atomic regions from SNP 237009 to 237609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,054 DEBUG Processing 498/748 atomic regions from SNP 149147 to 149747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,097 DEBUG Processing 476/732 atomic regions from SNP 142535 to 143135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,154 DEBUG Processing 433/705 atomic regions from SNP 129630 to 130230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,214 DEBUG Processing 792/857 atomic regions from SNP 237309 to 237909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,285 DEBUG Processing 499/748 atomic regions from SNP 149447 to 150047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,317 DEBUG Processing 477/732 atomic regions from SNP 142835 to 143435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,406 DEBUG Processing 434/705 atomic regions from SNP 129930 to 130530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,454 DEBUG Processing 793/857 atomic regions from SNP 237609 to 238209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,502 DEBUG Processing 500/748 atomic regions from SNP 149747 to 150347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,540 DEBUG Processing 478/732 atomic regions from SNP 143135 to 143735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,648 DEBUG Processing 435/705 atomic regions from SNP 130230 to 130830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,695 DEBUG Processing 794/857 atomic regions from SNP 237909 to 238509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,720 DEBUG Processing 501/748 atomic regions from SNP 150047 to 150647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,755 DEBUG Processing 479/732 atomic regions from SNP 143435 to 144035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,910 DEBUG Processing 436/705 atomic regions from SNP 130530 to 131130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,936 DEBUG Processing 795/857 atomic regions from SNP 238209 to 238809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,946 DEBUG Processing 502/748 atomic regions from SNP 150347 to 150947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,967 DEBUG Processing 480/732 atomic regions from SNP 143735 to 144335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,174 DEBUG Processing 503/748 atomic regions from SNP 150647 to 151247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,174 DEBUG Processing 437/705 atomic regions from SNP 130830 to 131430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,178 DEBUG Processing 796/857 atomic regions from SNP 238509 to 239109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,184 DEBUG Processing 481/732 atomic regions from SNP 144035 to 144635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,407 DEBUG Processing 482/732 atomic regions from SNP 144335 to 144935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,408 DEBUG Processing 504/748 atomic regions from SNP 150947 to 151547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,430 DEBUG Processing 797/857 atomic regions from SNP 238809 to 239409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,436 DEBUG Processing 438/705 atomic regions from SNP 131130 to 131730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,636 DEBUG Processing 483/732 atomic regions from SNP 144635 to 145235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,639 DEBUG Processing 505/748 atomic regions from SNP 151247 to 151847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,679 DEBUG Processing 798/857 atomic regions from SNP 239109 to 239709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,698 DEBUG Processing 439/705 atomic regions from SNP 131430 to 132030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,871 DEBUG Processing 484/732 atomic regions from SNP 144935 to 145535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,871 DEBUG Processing 506/748 atomic regions from SNP 151547 to 152147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,929 DEBUG Processing 799/857 atomic regions from SNP 239409 to 240009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,936 DEBUG Processing 440/705 atomic regions from SNP 131730 to 132330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,099 DEBUG Processing 507/748 atomic regions from SNP 151847 to 152447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,118 DEBUG Processing 485/732 atomic regions from SNP 145235 to 145835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,175 DEBUG Processing 800/857 atomic regions from SNP 239709 to 240309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,199 DEBUG Processing 441/705 atomic regions from SNP 132030 to 132630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,333 DEBUG Processing 508/748 atomic regions from SNP 152147 to 152747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,341 DEBUG Processing 486/732 atomic regions from SNP 145535 to 146135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,424 DEBUG Processing 801/857 atomic regions from SNP 240009 to 240609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,459 DEBUG Processing 442/705 atomic regions from SNP 132330 to 132930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,559 DEBUG Processing 509/748 atomic regions from SNP 152447 to 153047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,560 DEBUG Processing 487/732 atomic regions from SNP 145835 to 146435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,666 DEBUG Processing 802/857 atomic regions from SNP 240309 to 240909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,698 DEBUG Processing 443/705 atomic regions from SNP 132630 to 133230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,784 DEBUG Processing 510/748 atomic regions from SNP 152747 to 153347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,785 DEBUG Processing 488/732 atomic regions from SNP 146135 to 146735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,903 DEBUG Processing 803/857 atomic regions from SNP 240609 to 241209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,937 DEBUG Processing 444/705 atomic regions from SNP 132930 to 133530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,013 DEBUG Processing 489/732 atomic regions from SNP 146435 to 147035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,015 DEBUG Processing 511/748 atomic regions from SNP 153047 to 153647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,140 DEBUG Processing 804/857 atomic regions from SNP 240909 to 241509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,199 DEBUG Processing 445/705 atomic regions from SNP 133230 to 133830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,240 DEBUG Processing 490/732 atomic regions from SNP 146735 to 147335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,243 DEBUG Processing 512/748 atomic regions from SNP 153347 to 153947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,371 DEBUG Processing 805/857 atomic regions from SNP 241209 to 241809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,452 DEBUG Processing 446/705 atomic regions from SNP 133530 to 134130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,467 DEBUG Processing 491/732 atomic regions from SNP 147035 to 147635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,473 DEBUG Processing 513/748 atomic regions from SNP 153647 to 154247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,607 DEBUG Processing 806/857 atomic regions from SNP 241509 to 242109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,696 DEBUG Processing 492/732 atomic regions from SNP 147335 to 147935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,707 DEBUG Processing 514/748 atomic regions from SNP 153947 to 154547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,718 DEBUG Processing 447/705 atomic regions from SNP 133830 to 134430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,844 DEBUG Processing 807/857 atomic regions from SNP 241809 to 242409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,921 DEBUG Processing 493/732 atomic regions from SNP 147635 to 148235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,955 DEBUG Processing 515/748 atomic regions from SNP 154247 to 154847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,971 DEBUG Processing 448/705 atomic regions from SNP 134130 to 134730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,092 DEBUG Processing 808/857 atomic regions from SNP 242109 to 242709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,152 DEBUG Processing 494/732 atomic regions from SNP 147935 to 148535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,210 DEBUG Processing 449/705 atomic regions from SNP 134430 to 135030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,216 DEBUG Processing 516/748 atomic regions from SNP 154547 to 155147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,337 DEBUG Processing 809/857 atomic regions from SNP 242409 to 243009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,382 DEBUG Processing 495/732 atomic regions from SNP 148235 to 148835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,442 DEBUG Processing 517/748 atomic regions from SNP 154847 to 155447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,445 DEBUG Processing 450/705 atomic regions from SNP 134730 to 135330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,584 DEBUG Processing 810/857 atomic regions from SNP 242709 to 243309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,610 DEBUG Processing 496/732 atomic regions from SNP 148535 to 149135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,672 DEBUG Processing 518/748 atomic regions from SNP 155147 to 155747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,679 DEBUG Processing 451/705 atomic regions from SNP 135030 to 135630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,830 DEBUG Processing 497/732 atomic regions from SNP 148835 to 149435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,830 DEBUG Processing 811/857 atomic regions from SNP 243009 to 243609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,902 DEBUG Processing 519/748 atomic regions from SNP 155447 to 156047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,917 DEBUG Processing 452/705 atomic regions from SNP 135330 to 135930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,054 DEBUG Processing 498/732 atomic regions from SNP 149135 to 149735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,078 DEBUG Processing 812/857 atomic regions from SNP 243309 to 243909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,133 DEBUG Processing 520/748 atomic regions from SNP 155747 to 156347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,157 DEBUG Processing 453/705 atomic regions from SNP 135630 to 136230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,291 DEBUG Processing 499/732 atomic regions from SNP 149435 to 150035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,330 DEBUG Processing 813/857 atomic regions from SNP 243609 to 244209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,365 DEBUG Processing 521/748 atomic regions from SNP 156047 to 156647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,395 DEBUG Processing 454/705 atomic regions from SNP 135930 to 136530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,524 DEBUG Processing 500/732 atomic regions from SNP 149735 to 150335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,577 DEBUG Processing 814/857 atomic regions from SNP 243909 to 244509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,595 DEBUG Processing 522/748 atomic regions from SNP 156347 to 156947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,634 DEBUG Processing 455/705 atomic regions from SNP 136230 to 136830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,758 DEBUG Processing 501/732 atomic regions from SNP 150035 to 150635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,822 DEBUG Processing 815/857 atomic regions from SNP 244209 to 244809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,824 DEBUG Processing 523/748 atomic regions from SNP 156647 to 157247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,872 DEBUG Processing 456/705 atomic regions from SNP 136530 to 137130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,990 DEBUG Processing 502/732 atomic regions from SNP 150335 to 150935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,053 DEBUG Processing 524/748 atomic regions from SNP 156947 to 157547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,065 DEBUG Processing 816/857 atomic regions from SNP 244509 to 245109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,096 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:51:22,098 DEBUG chr14: Signal quantile: 0.994. signal threshold: 14. Best RMSEA: 0.018 2025-01-31 09:51:22,113 DEBUG Processing 457/705 atomic regions from SNP 136830 to 137430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,221 DEBUG Processing 503/732 atomic regions from SNP 150635 to 151235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,281 DEBUG Processing 525/748 atomic regions from SNP 157247 to 157847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,309 DEBUG Processing 817/857 atomic regions from SNP 244809 to 245409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,356 DEBUG Processing 458/705 atomic regions from SNP 137130 to 137730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,455 DEBUG Processing 504/732 atomic regions from SNP 150935 to 151535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,512 DEBUG Processing 526/748 atomic regions from SNP 157547 to 158147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,560 DEBUG Processing 818/857 atomic regions from SNP 245109 to 245709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,600 DEBUG Processing 459/705 atomic regions from SNP 137430 to 138030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,694 DEBUG Processing 505/732 atomic regions from SNP 151235 to 151835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,748 DEBUG Processing 527/748 atomic regions from SNP 157847 to 158447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,811 DEBUG Processing 819/857 atomic regions from SNP 245409 to 246009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,837 DEBUG Processing 460/705 atomic regions from SNP 137730 to 138330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,927 DEBUG Processing 506/732 atomic regions from SNP 151535 to 152135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,993 DEBUG Processing 528/748 atomic regions from SNP 158147 to 158747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,056 DEBUG Processing 820/857 atomic regions from SNP 245709 to 246309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,074 DEBUG Processing 461/705 atomic regions from SNP 138030 to 138630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,153 DEBUG Processing 507/732 atomic regions from SNP 151835 to 152435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,233 DEBUG Processing 529/748 atomic regions from SNP 158447 to 159047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,309 DEBUG Processing 821/857 atomic regions from SNP 246009 to 246609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,319 DEBUG Processing 462/705 atomic regions from SNP 138330 to 138930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,381 DEBUG Processing 508/732 atomic regions from SNP 152135 to 152735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,469 DEBUG Processing 530/748 atomic regions from SNP 158747 to 159347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,552 DEBUG Processing 822/857 atomic regions from SNP 246309 to 246909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,554 DEBUG Processing 463/705 atomic regions from SNP 138630 to 139230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,609 DEBUG Processing 509/732 atomic regions from SNP 152435 to 153035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,704 DEBUG Processing 531/748 atomic regions from SNP 159047 to 159647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,796 DEBUG Processing 464/705 atomic regions from SNP 138930 to 139530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,802 DEBUG Processing 823/857 atomic regions from SNP 246609 to 247209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,836 DEBUG Processing 510/732 atomic regions from SNP 152735 to 153335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,944 DEBUG Processing 532/748 atomic regions from SNP 159347 to 159947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,043 DEBUG Processing 824/857 atomic regions from SNP 246909 to 247509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,045 DEBUG Processing 465/705 atomic regions from SNP 139230 to 139830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,063 DEBUG Processing 511/732 atomic regions from SNP 153035 to 153635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,180 DEBUG Processing 533/748 atomic regions from SNP 159647 to 160247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,291 DEBUG Processing 825/857 atomic regions from SNP 247209 to 247809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,292 DEBUG Processing 512/732 atomic regions from SNP 153335 to 153935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,312 DEBUG Processing 466/705 atomic regions from SNP 139530 to 140130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,406 DEBUG chr14 total SNP count: 200397 2025-01-31 09:51:24,406 DEBUG chr14 length: 124902244 2025-01-31 09:51:24,406 DEBUG ----------------------------------------- 2025-01-31 09:51:24,406 INFO Processing SNPs in chr14 2025-01-31 09:51:24,418 DEBUG Processing 534/748 atomic regions from SNP 159947 to 160547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,514 DEBUG Processing 513/732 atomic regions from SNP 153635 to 154235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,537 DEBUG Processing 826/857 atomic regions from SNP 247509 to 248109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,549 DEBUG Processing 467/705 atomic regions from SNP 139830 to 140430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,632 DEBUG Processing 535/748 atomic regions from SNP 160247 to 160847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,714 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 179), (179, 200397)] 2025-01-31 09:51:24,729 DEBUG Processing 514/732 atomic regions from SNP 153935 to 154535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,777 DEBUG Processing 827/857 atomic regions from SNP 247809 to 248409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,782 DEBUG Processing 468/705 atomic regions from SNP 140130 to 140730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,801 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:24,822 DEBUG Segmenting atomic regions: 2025-01-31 09:51:24,852 DEBUG Processing 536/748 atomic regions from SNP 160547 to 161147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,906 DEBUG Processing 1/1 atomic regions from SNP 0 to 178 for chr14 (subchromosome 1 of 2). 2025-01-31 09:51:24,916 DEBUG Unique SNPs positions in subchromosome 1: 179 2025-01-31 09:51:24,917 DEBUG Subchromosome time: 0.11606994399335235, subchromosome SNPs: 179 2025-01-31 09:51:24,948 DEBUG Processing 515/732 atomic regions from SNP 154235 to 154835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,968 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:25,016 DEBUG Processing 469/705 atomic regions from SNP 140430 to 141030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,021 DEBUG Processing 828/857 atomic regions from SNP 248109 to 248709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,077 DEBUG Processing 537/748 atomic regions from SNP 160847 to 161447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,166 DEBUG Processing 516/732 atomic regions from SNP 154535 to 155135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,240 DEBUG Processing 470/705 atomic regions from SNP 140730 to 141330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,252 DEBUG Processing 829/857 atomic regions from SNP 248409 to 249009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,297 DEBUG Processing 538/748 atomic regions from SNP 161147 to 161747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,387 DEBUG Processing 517/732 atomic regions from SNP 154835 to 155435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,463 DEBUG Processing 471/705 atomic regions from SNP 141030 to 141630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,487 DEBUG Processing 830/857 atomic regions from SNP 248709 to 249309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,521 DEBUG Processing 539/748 atomic regions from SNP 161447 to 162047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,614 DEBUG Processing 518/732 atomic regions from SNP 155135 to 155735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,688 DEBUG Processing 472/705 atomic regions from SNP 141330 to 141930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,726 DEBUG Processing 831/857 atomic regions from SNP 249009 to 249609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,754 DEBUG Processing 540/748 atomic regions from SNP 161747 to 162347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,848 DEBUG Processing 519/732 atomic regions from SNP 155435 to 156035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,926 DEBUG Processing 473/705 atomic regions from SNP 141630 to 142230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,974 DEBUG Processing 832/857 atomic regions from SNP 249309 to 249909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,990 DEBUG Processing 541/748 atomic regions from SNP 162047 to 162647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,093 DEBUG Processing 520/732 atomic regions from SNP 155735 to 156335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,148 DEBUG Processing 474/705 atomic regions from SNP 141930 to 142530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,212 DEBUG Processing 833/857 atomic regions from SNP 249609 to 250209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,220 DEBUG Processing 542/748 atomic regions from SNP 162347 to 162947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,347 DEBUG Processing 521/732 atomic regions from SNP 156035 to 156635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,368 DEBUG Processing 475/705 atomic regions from SNP 142230 to 142830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,449 DEBUG Processing 834/857 atomic regions from SNP 249909 to 250509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,456 DEBUG Processing 543/748 atomic regions from SNP 162647 to 163247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,596 DEBUG Processing 476/705 atomic regions from SNP 142530 to 143130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,603 DEBUG Processing 522/732 atomic regions from SNP 156335 to 156935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,684 DEBUG Processing 835/857 atomic regions from SNP 250209 to 250809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,687 DEBUG Processing 544/748 atomic regions from SNP 162947 to 163547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,812 DEBUG Processing 477/705 atomic regions from SNP 142830 to 143430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,840 DEBUG Processing 523/732 atomic regions from SNP 156635 to 157235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,903 DEBUG Processing 545/748 atomic regions from SNP 163247 to 163847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,916 DEBUG Processing 836/857 atomic regions from SNP 250509 to 251109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,024 DEBUG Processing 478/705 atomic regions from SNP 143130 to 143730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,079 DEBUG Processing 524/732 atomic regions from SNP 156935 to 157535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,123 DEBUG Processing 546/748 atomic regions from SNP 163547 to 164147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,146 DEBUG Processing 837/857 atomic regions from SNP 250809 to 251409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,235 DEBUG Processing 479/705 atomic regions from SNP 143430 to 144030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,325 DEBUG Processing 525/732 atomic regions from SNP 157235 to 157835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,337 DEBUG Processing 547/748 atomic regions from SNP 163847 to 164447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,377 DEBUG Processing 838/857 atomic regions from SNP 251109 to 251709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,452 DEBUG Processing 480/705 atomic regions from SNP 143730 to 144330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,552 DEBUG Processing 548/748 atomic regions from SNP 164147 to 164747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,587 DEBUG Processing 526/732 atomic regions from SNP 157535 to 158135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,606 DEBUG Processing 839/857 atomic regions from SNP 251409 to 252009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,670 DEBUG Processing 481/705 atomic regions from SNP 144030 to 144630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,769 DEBUG Processing 549/748 atomic regions from SNP 164447 to 165047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,840 DEBUG Processing 527/732 atomic regions from SNP 157835 to 158435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,840 DEBUG Processing 840/857 atomic regions from SNP 251709 to 252309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,912 DEBUG Processing 482/705 atomic regions from SNP 144330 to 144930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,985 DEBUG Processing 550/748 atomic regions from SNP 164747 to 165347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,082 DEBUG Processing 528/732 atomic regions from SNP 158135 to 158735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,095 DEBUG Processing 841/857 atomic regions from SNP 252009 to 252609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,155 DEBUG Processing 483/705 atomic regions from SNP 144630 to 145230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,196 DEBUG Processing 551/748 atomic regions from SNP 165047 to 165647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,343 DEBUG Processing 842/857 atomic regions from SNP 252309 to 252909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,345 DEBUG Processing 529/732 atomic regions from SNP 158435 to 159035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,386 DEBUG Processing 484/705 atomic regions from SNP 144930 to 145530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,419 DEBUG Processing 552/748 atomic regions from SNP 165347 to 165947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,584 DEBUG Processing 843/857 atomic regions from SNP 252609 to 253209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,589 DEBUG Processing 530/732 atomic regions from SNP 158735 to 159335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,629 DEBUG Processing 485/705 atomic regions from SNP 145230 to 145830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,636 DEBUG Processing 553/748 atomic regions from SNP 165647 to 166247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,819 DEBUG Processing 844/857 atomic regions from SNP 252909 to 253509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,851 DEBUG Processing 531/732 atomic regions from SNP 159035 to 159635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,860 DEBUG Processing 554/748 atomic regions from SNP 165947 to 166547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,876 DEBUG Processing 486/705 atomic regions from SNP 145530 to 146130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,054 DEBUG Processing 845/857 atomic regions from SNP 253209 to 253809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,083 DEBUG Processing 555/748 atomic regions from SNP 166247 to 166847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,112 DEBUG Processing 532/732 atomic regions from SNP 159335 to 159935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,132 DEBUG Processing 487/705 atomic regions from SNP 145830 to 146430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,287 DEBUG Processing 846/857 atomic regions from SNP 253509 to 254109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,305 DEBUG Processing 556/748 atomic regions from SNP 166547 to 167147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,351 DEBUG Processing 533/732 atomic regions from SNP 159635 to 160235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,382 DEBUG Processing 488/705 atomic regions from SNP 146130 to 146730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,521 DEBUG Processing 847/857 atomic regions from SNP 253809 to 254409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,527 DEBUG Processing 557/748 atomic regions from SNP 166847 to 167447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,586 DEBUG Processing 534/732 atomic regions from SNP 159935 to 160535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,641 DEBUG Processing 489/705 atomic regions from SNP 146430 to 147030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,745 DEBUG Processing 558/748 atomic regions from SNP 167147 to 167747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,754 DEBUG Processing 848/857 atomic regions from SNP 254109 to 254709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,823 DEBUG Processing 535/732 atomic regions from SNP 160235 to 160835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,874 DEBUG Processing 490/705 atomic regions from SNP 146730 to 147330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,968 DEBUG Processing 559/748 atomic regions from SNP 167447 to 168047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,987 DEBUG Processing 849/857 atomic regions from SNP 254409 to 255009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,056 DEBUG Processing 536/732 atomic regions from SNP 160535 to 161135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,103 DEBUG Processing 491/705 atomic regions from SNP 147030 to 147630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,186 DEBUG Processing 560/748 atomic regions from SNP 167747 to 168347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,221 DEBUG Processing 850/857 atomic regions from SNP 254709 to 255309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,291 DEBUG Processing 537/732 atomic regions from SNP 160835 to 161435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,338 DEBUG Processing 492/705 atomic regions from SNP 147330 to 147930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,404 DEBUG Processing 561/748 atomic regions from SNP 168047 to 168647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,455 DEBUG Processing 851/857 atomic regions from SNP 255009 to 255609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,521 DEBUG Processing 538/732 atomic regions from SNP 161135 to 161735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,593 DEBUG Processing 493/705 atomic regions from SNP 147630 to 148230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,619 DEBUG Processing 562/748 atomic regions from SNP 168347 to 168947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,688 DEBUG Processing 852/857 atomic regions from SNP 255309 to 255909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,746 DEBUG Processing 539/732 atomic regions from SNP 161435 to 162035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,842 DEBUG Processing 494/705 atomic regions from SNP 147930 to 148530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,853 DEBUG Processing 563/748 atomic regions from SNP 168647 to 169247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,930 DEBUG Processing 853/857 atomic regions from SNP 255609 to 256209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,971 DEBUG Processing 540/732 atomic regions from SNP 161735 to 162335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,090 DEBUG Processing 564/748 atomic regions from SNP 168947 to 169547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,093 DEBUG Processing 495/705 atomic regions from SNP 148230 to 148830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,164 DEBUG Processing 854/857 atomic regions from SNP 255909 to 256509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,191 DEBUG Processing 541/732 atomic regions from SNP 162035 to 162635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,311 DEBUG Processing 565/748 atomic regions from SNP 169247 to 169847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,330 DEBUG Processing 496/705 atomic regions from SNP 148530 to 149130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,414 DEBUG Processing 542/732 atomic regions from SNP 162335 to 162935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,422 DEBUG Processing 855/857 atomic regions from SNP 256209 to 256809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,530 DEBUG Processing 566/748 atomic regions from SNP 169547 to 170147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,559 DEBUG Processing 497/705 atomic regions from SNP 148830 to 149430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,641 DEBUG Processing 543/732 atomic regions from SNP 162635 to 163235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,674 DEBUG Processing 856/857 atomic regions from SNP 256509 to 257109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,749 DEBUG Processing 567/748 atomic regions from SNP 169847 to 170447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,790 DEBUG Processing 498/705 atomic regions from SNP 149130 to 149730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,869 DEBUG Processing 544/732 atomic regions from SNP 162935 to 163535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,920 DEBUG Processing 857/857 atomic regions from SNP 256809 to 257409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,970 DEBUG Processing 568/748 atomic regions from SNP 170147 to 170747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,019 DEBUG Processing 499/705 atomic regions from SNP 149430 to 150030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,057 DEBUG Unique SNPs positions in subchromosome 1: 257410 2025-01-31 09:51:32,102 DEBUG Processing 545/732 atomic regions from SNP 163235 to 163835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,195 DEBUG Processing 569/748 atomic regions from SNP 170447 to 171047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,249 DEBUG Processing 500/705 atomic regions from SNP 149730 to 150330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,331 DEBUG Processing 546/732 atomic regions from SNP 163535 to 164135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,414 DEBUG Processing 570/748 atomic regions from SNP 170747 to 171347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,478 DEBUG Processing 501/705 atomic regions from SNP 150030 to 150630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,560 DEBUG Processing 547/732 atomic regions from SNP 163835 to 164435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,629 DEBUG Processing 571/748 atomic regions from SNP 171047 to 171647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,704 DEBUG Processing 502/705 atomic regions from SNP 150330 to 150930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,781 DEBUG Processing 548/732 atomic regions from SNP 164135 to 164735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,849 DEBUG Processing 572/748 atomic regions from SNP 171347 to 171947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,933 DEBUG Processing 503/705 atomic regions from SNP 150630 to 151230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,000 DEBUG Processing 549/732 atomic regions from SNP 164435 to 165035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,067 DEBUG Processing 573/748 atomic regions from SNP 171647 to 172247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,160 DEBUG Processing 504/705 atomic regions from SNP 150930 to 151530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,218 DEBUG Processing 550/732 atomic regions from SNP 164735 to 165335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,286 DEBUG Processing 574/748 atomic regions from SNP 171947 to 172547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,387 DEBUG Processing 505/705 atomic regions from SNP 151230 to 151830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,439 DEBUG Processing 551/732 atomic regions from SNP 165035 to 165635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,504 DEBUG Processing 575/748 atomic regions from SNP 172247 to 172847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,615 DEBUG Processing 506/705 atomic regions from SNP 151530 to 152130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,666 DEBUG Processing 552/732 atomic regions from SNP 165335 to 165935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,723 DEBUG Processing 576/748 atomic regions from SNP 172547 to 173147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,839 DEBUG Processing 507/705 atomic regions from SNP 151830 to 152430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,896 DEBUG Processing 553/732 atomic regions from SNP 165635 to 166235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,947 DEBUG Processing 577/748 atomic regions from SNP 172847 to 173447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,063 DEBUG Processing 508/705 atomic regions from SNP 152130 to 152730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,125 DEBUG Processing 554/732 atomic regions from SNP 165935 to 166535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,171 DEBUG Processing 578/748 atomic regions from SNP 173147 to 173747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,303 DEBUG Processing 509/705 atomic regions from SNP 152430 to 153030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,366 DEBUG Processing 555/732 atomic regions from SNP 166235 to 166835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,395 DEBUG Processing 579/748 atomic regions from SNP 173447 to 174047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,524 DEBUG Processing 510/705 atomic regions from SNP 152730 to 153330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,604 DEBUG Processing 556/732 atomic regions from SNP 166535 to 167135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,611 DEBUG Processing 580/748 atomic regions from SNP 173747 to 174347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,743 DEBUG Processing 511/705 atomic regions from SNP 153030 to 153630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,827 DEBUG Processing 581/748 atomic regions from SNP 174047 to 174647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,832 DEBUG Processing 557/732 atomic regions from SNP 166835 to 167435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,968 DEBUG Processing 512/705 atomic regions from SNP 153330 to 153930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,055 DEBUG Processing 582/748 atomic regions from SNP 174347 to 174947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,064 DEBUG Processing 558/732 atomic regions from SNP 167135 to 167735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,193 DEBUG Processing 513/705 atomic regions from SNP 153630 to 154230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,284 DEBUG Processing 583/748 atomic regions from SNP 174647 to 175247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,298 DEBUG Processing 559/732 atomic regions from SNP 167435 to 168035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,417 DEBUG Processing 514/705 atomic regions from SNP 153930 to 154530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,508 DEBUG Processing 584/748 atomic regions from SNP 174947 to 175547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,531 DEBUG Processing 560/732 atomic regions from SNP 167735 to 168335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,643 DEBUG Processing 515/705 atomic regions from SNP 154230 to 154830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,731 DEBUG Processing 585/748 atomic regions from SNP 175247 to 175847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,755 DEBUG Processing 561/732 atomic regions from SNP 168035 to 168635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,872 DEBUG Processing 516/705 atomic regions from SNP 154530 to 155130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,953 DEBUG Processing 586/748 atomic regions from SNP 175547 to 176147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,984 DEBUG Processing 562/732 atomic regions from SNP 168335 to 168935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,101 DEBUG Processing 517/705 atomic regions from SNP 154830 to 155430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,179 DEBUG Processing 587/748 atomic regions from SNP 175847 to 176447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,214 DEBUG Processing 563/732 atomic regions from SNP 168635 to 169235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,346 DEBUG Processing 518/705 atomic regions from SNP 155130 to 155730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,398 DEBUG Processing 588/748 atomic regions from SNP 176147 to 176747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,437 DEBUG Processing 564/732 atomic regions from SNP 168935 to 169535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,578 DEBUG Processing 519/705 atomic regions from SNP 155430 to 156030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,619 DEBUG Processing 589/748 atomic regions from SNP 176447 to 177047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,661 DEBUG Processing 565/732 atomic regions from SNP 169235 to 169835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,803 DEBUG Processing 520/705 atomic regions from SNP 155730 to 156330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,837 DEBUG Processing 590/748 atomic regions from SNP 176747 to 177347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,883 DEBUG Processing 566/732 atomic regions from SNP 169535 to 170135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,030 DEBUG Processing 521/705 atomic regions from SNP 156030 to 156630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,054 DEBUG Processing 591/748 atomic regions from SNP 177047 to 177647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,104 DEBUG Processing 567/732 atomic regions from SNP 169835 to 170435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,252 DEBUG Processing 522/705 atomic regions from SNP 156330 to 156930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,271 DEBUG Processing 592/748 atomic regions from SNP 177347 to 177947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,329 DEBUG Processing 568/732 atomic regions from SNP 170135 to 170735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,478 DEBUG Processing 523/705 atomic regions from SNP 156630 to 157230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,488 DEBUG Processing 593/748 atomic regions from SNP 177647 to 178247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,551 DEBUG Processing 569/732 atomic regions from SNP 170435 to 171035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,704 DEBUG Processing 594/748 atomic regions from SNP 177947 to 178547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,708 DEBUG Processing 524/705 atomic regions from SNP 156930 to 157530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,773 DEBUG Processing 570/732 atomic regions from SNP 170735 to 171335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,923 DEBUG Processing 595/748 atomic regions from SNP 178247 to 178847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,953 DEBUG Processing 525/705 atomic regions from SNP 157230 to 157830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,991 DEBUG Processing 571/732 atomic regions from SNP 171035 to 171635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,145 DEBUG Processing 596/748 atomic regions from SNP 178547 to 179147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,205 DEBUG Processing 526/705 atomic regions from SNP 157530 to 158130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,210 DEBUG Processing 572/732 atomic regions from SNP 171335 to 171935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,242 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:51:38,366 DEBUG Processing 597/748 atomic regions from SNP 178847 to 179447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,433 DEBUG Processing 573/732 atomic regions from SNP 171635 to 172235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,464 DEBUG Processing 527/705 atomic regions from SNP 157830 to 158430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,594 DEBUG Processing 598/748 atomic regions from SNP 179147 to 179747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,654 DEBUG Processing 574/732 atomic regions from SNP 171935 to 172535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,697 DEBUG Processing 528/705 atomic regions from SNP 158130 to 158730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,815 DEBUG Processing 599/748 atomic regions from SNP 179447 to 180047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,877 DEBUG Processing 575/732 atomic regions from SNP 172235 to 172835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,923 DEBUG Processing 529/705 atomic regions from SNP 158430 to 159030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,034 DEBUG Processing 600/748 atomic regions from SNP 179747 to 180347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,097 DEBUG Processing 576/732 atomic regions from SNP 172535 to 173135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,142 DEBUG Processing 530/705 atomic regions from SNP 158730 to 159330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,246 DEBUG Processing 601/748 atomic regions from SNP 180047 to 180647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,315 DEBUG Processing 577/732 atomic regions from SNP 172835 to 173435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,361 DEBUG Processing 531/705 atomic regions from SNP 159030 to 159630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,459 DEBUG Processing 602/748 atomic regions from SNP 180347 to 180947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,536 DEBUG Processing 578/732 atomic regions from SNP 173135 to 173735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,580 DEBUG Processing 532/705 atomic regions from SNP 159330 to 159930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,669 DEBUG Processing 603/748 atomic regions from SNP 180647 to 181247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,764 DEBUG Processing 579/732 atomic regions from SNP 173435 to 174035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,800 DEBUG Processing 533/705 atomic regions from SNP 159630 to 160230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,880 DEBUG Processing 604/748 atomic regions from SNP 180947 to 181547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,996 DEBUG Processing 580/732 atomic regions from SNP 173735 to 174335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,021 DEBUG Processing 534/705 atomic regions from SNP 159930 to 160530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,094 DEBUG Processing 605/748 atomic regions from SNP 181247 to 181847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,222 DEBUG Processing 581/732 atomic regions from SNP 174035 to 174635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,242 DEBUG Processing 535/705 atomic regions from SNP 160230 to 160830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,306 DEBUG Processing 606/748 atomic regions from SNP 181547 to 182147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,463 DEBUG Processing 536/705 atomic regions from SNP 160530 to 161130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,465 DEBUG Processing 582/732 atomic regions from SNP 174335 to 174935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,520 DEBUG Processing 607/748 atomic regions from SNP 181847 to 182447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,681 DEBUG Processing 537/705 atomic regions from SNP 160830 to 161430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,710 DEBUG Processing 583/732 atomic regions from SNP 174635 to 175235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,734 DEBUG Processing 608/748 atomic regions from SNP 182147 to 182747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,898 DEBUG Processing 538/705 atomic regions from SNP 161130 to 161730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,936 DEBUG Processing 584/732 atomic regions from SNP 174935 to 175535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,948 DEBUG Processing 609/748 atomic regions from SNP 182447 to 183047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,124 DEBUG Processing 539/705 atomic regions from SNP 161430 to 162030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,163 DEBUG Processing 585/732 atomic regions from SNP 175235 to 175835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,176 DEBUG Processing 610/748 atomic regions from SNP 182747 to 183347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,342 DEBUG Processing 540/705 atomic regions from SNP 161730 to 162330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,392 DEBUG Processing 611/748 atomic regions from SNP 183047 to 183647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,408 DEBUG Processing 586/732 atomic regions from SNP 175535 to 176135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,561 DEBUG Processing 541/705 atomic regions from SNP 162030 to 162630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,609 DEBUG Processing 612/748 atomic regions from SNP 183347 to 183947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,669 DEBUG Processing 587/732 atomic regions from SNP 175835 to 176435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,794 DEBUG Processing 542/705 atomic regions from SNP 162330 to 162930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,825 DEBUG Processing 613/748 atomic regions from SNP 183647 to 184247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,932 DEBUG Processing 588/732 atomic regions from SNP 176135 to 176735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,028 DEBUG Processing 543/705 atomic regions from SNP 162630 to 163230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,043 DEBUG Processing 614/748 atomic regions from SNP 183947 to 184547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,183 DEBUG Processing 589/732 atomic regions from SNP 176435 to 177035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,247 DEBUG Processing 544/705 atomic regions from SNP 162930 to 163530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,259 DEBUG Processing 615/748 atomic regions from SNP 184247 to 184847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,438 DEBUG Processing 590/732 atomic regions from SNP 176735 to 177335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,466 DEBUG Processing 545/705 atomic regions from SNP 163230 to 163830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,470 DEBUG Processing 616/748 atomic regions from SNP 184547 to 185147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,681 DEBUG Processing 617/748 atomic regions from SNP 184847 to 185447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,683 DEBUG Processing 546/705 atomic regions from SNP 163530 to 164130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,687 DEBUG Processing 591/732 atomic regions from SNP 177035 to 177635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,898 DEBUG Processing 618/748 atomic regions from SNP 185147 to 185747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,902 DEBUG Processing 547/705 atomic regions from SNP 163830 to 164430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,937 DEBUG Processing 592/732 atomic regions from SNP 177335 to 177935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,112 DEBUG Processing 619/748 atomic regions from SNP 185447 to 186047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,124 DEBUG Processing 548/705 atomic regions from SNP 164130 to 164730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,172 DEBUG Processing 593/732 atomic regions from SNP 177635 to 178235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,327 DEBUG Processing 620/748 atomic regions from SNP 185747 to 186347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,349 DEBUG Processing 549/705 atomic regions from SNP 164430 to 165030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,393 DEBUG Processing 594/732 atomic regions from SNP 177935 to 178535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,543 DEBUG Processing 621/748 atomic regions from SNP 186047 to 186647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,572 DEBUG Processing 550/705 atomic regions from SNP 164730 to 165330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,611 DEBUG Processing 595/732 atomic regions from SNP 178235 to 178835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,757 DEBUG Processing 622/748 atomic regions from SNP 186347 to 186947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,794 DEBUG Processing 551/705 atomic regions from SNP 165030 to 165630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,842 DEBUG Processing 596/732 atomic regions from SNP 178535 to 179135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,846 DEBUG Subchromosome time: 248.07354998891242, subchromosome SNPs: 257410 2025-01-31 09:51:43,846 DEBUG Estimated BADs: [1.89, 0.94, 3.78, 1.89, 5.67, 1.89, 0.47, 3.78, 1.89, 0.94, 3.78, 0.63, 3.78, 0.47, 0.94, 9.44, 1.89, 5.67, 1.89, 0.94, 7.55, 3.78, 1.89, 11.33, 3.78, 0.47, 1.89, 11.33, 1.89] SNP counts: [10899, 32111, 12820, 5744, 1846, 8083, 5427, 7584, 14581, 12498, 1607, 4143, 6349, 8997, 6179, 736, 4498, 11320, 21072, 15898, 1824, 16607, 2082, 1401, 8369, 5413, 2430, 292, 26600] SNP IDs counts: [10899, 32111, 12820, 5744, 1846, 8083, 5427, 7584, 14581, 12498, 1607, 4143, 6349, 8997, 6179, 736, 4498, 11320, 21072, 15898, 1824, 16607, 2082, 1401, 8369, 5413, 2430, 292, 26600] Critical gap: 663530bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.35Mbp, 28.26Mbp, 35.13Mbp, 38.34Mbp, 39.30Mbp, 43.96Mbp, 47.17Mbp, 51.44Mbp, 59.54Mbp, 66.94Mbp, 67.89Mbp, 70.71Mbp, 74.16Mbp, 79.47Mbp, 83.00Mbp, 83.38Mbp, 85.90Mbp, 91.98Mbp, 103.50Mbp, 112.70Mbp, 113.65Mbp, 122.83Mbp, 124.37Mbp, 125.14Mbp, 129.68Mbp, 133.37Mbp, 134.79Mbp, 134.95Mbp, 149.74Mbp] 2025-01-31 09:51:43,846 DEBUG chr6 time: 248.07420548493974 s 2025-01-31 09:51:43,974 DEBUG Processing 623/748 atomic regions from SNP 186647 to 187247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,986 DEBUG chr6: Fitting background model for 29 segments 2025-01-31 09:51:44,021 DEBUG Processing 552/705 atomic regions from SNP 165330 to 165930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,094 DEBUG Processing 597/732 atomic regions from SNP 178835 to 179435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,193 DEBUG Processing 624/748 atomic regions from SNP 186947 to 187547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,250 DEBUG Processing 553/705 atomic regions from SNP 165630 to 166230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,341 DEBUG Processing 598/732 atomic regions from SNP 179135 to 179735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,413 DEBUG Processing 625/748 atomic regions from SNP 187247 to 187847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,491 DEBUG Processing 554/705 atomic regions from SNP 165930 to 166530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,605 DEBUG Processing 599/732 atomic regions from SNP 179435 to 180035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,631 DEBUG Processing 626/748 atomic regions from SNP 187547 to 188147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,744 DEBUG Processing 555/705 atomic regions from SNP 166230 to 166830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,840 DEBUG Processing 627/748 atomic regions from SNP 187847 to 188447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,855 DEBUG Processing 600/732 atomic regions from SNP 179735 to 180335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,990 DEBUG Processing 556/705 atomic regions from SNP 166530 to 167130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,051 DEBUG Processing 628/748 atomic regions from SNP 188147 to 188747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,090 DEBUG Processing 601/732 atomic regions from SNP 180035 to 180635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,220 DEBUG Processing 557/705 atomic regions from SNP 166830 to 167430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,263 DEBUG Processing 629/748 atomic regions from SNP 188447 to 189047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,317 DEBUG Processing 602/732 atomic regions from SNP 180335 to 180935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,450 DEBUG Processing 558/705 atomic regions from SNP 167130 to 167730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,483 DEBUG Processing 630/748 atomic regions from SNP 188747 to 189347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,551 DEBUG Processing 603/732 atomic regions from SNP 180635 to 181235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,678 DEBUG Processing 559/705 atomic regions from SNP 167430 to 168030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,701 DEBUG Processing 631/748 atomic regions from SNP 189047 to 189647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,785 DEBUG Processing 604/732 atomic regions from SNP 180935 to 181535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,898 DEBUG Processing 560/705 atomic regions from SNP 167730 to 168330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,914 DEBUG Processing 632/748 atomic regions from SNP 189347 to 189947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,017 DEBUG Processing 605/732 atomic regions from SNP 181235 to 181835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,119 DEBUG Processing 561/705 atomic regions from SNP 168030 to 168630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,129 DEBUG Processing 633/748 atomic regions from SNP 189647 to 190247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,251 DEBUG Processing 606/732 atomic regions from SNP 181535 to 182135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,350 DEBUG Processing 634/748 atomic regions from SNP 189947 to 190547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,357 DEBUG Processing 562/705 atomic regions from SNP 168330 to 168930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,487 DEBUG Processing 607/732 atomic regions from SNP 181835 to 182435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,572 DEBUG Processing 635/748 atomic regions from SNP 190247 to 190847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,609 DEBUG Processing 563/705 atomic regions from SNP 168630 to 169230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,718 DEBUG Processing 608/732 atomic regions from SNP 182135 to 182735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,794 DEBUG Processing 636/748 atomic regions from SNP 190547 to 191147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,847 DEBUG Processing 564/705 atomic regions from SNP 168930 to 169530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,952 DEBUG Processing 609/732 atomic regions from SNP 182435 to 183035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,016 DEBUG Processing 637/748 atomic regions from SNP 190847 to 191447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,079 DEBUG Processing 565/705 atomic regions from SNP 169230 to 169830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,188 DEBUG Processing 610/732 atomic regions from SNP 182735 to 183335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,235 DEBUG Processing 638/748 atomic regions from SNP 191147 to 191747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,311 DEBUG Processing 566/705 atomic regions from SNP 169530 to 170130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,420 DEBUG Processing 611/732 atomic regions from SNP 183035 to 183635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,450 DEBUG Processing 639/748 atomic regions from SNP 191447 to 192047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,534 DEBUG Processing 567/705 atomic regions from SNP 169830 to 170430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,654 DEBUG Processing 612/732 atomic regions from SNP 183335 to 183935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,669 DEBUG Processing 640/748 atomic regions from SNP 191747 to 192347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,762 DEBUG Processing 568/705 atomic regions from SNP 170130 to 170730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,891 DEBUG Processing 641/748 atomic regions from SNP 192047 to 192647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,893 DEBUG Processing 613/732 atomic regions from SNP 183635 to 184235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,003 DEBUG Processing 569/705 atomic regions from SNP 170430 to 171030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,109 DEBUG Processing 642/748 atomic regions from SNP 192347 to 192947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,149 DEBUG Processing 614/732 atomic regions from SNP 183935 to 184535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,227 DEBUG Processing 570/705 atomic regions from SNP 170730 to 171330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,326 DEBUG Processing 643/748 atomic regions from SNP 192647 to 193247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,357 DEBUG Segmenting atomic regions: 2025-01-31 09:51:48,380 DEBUG Processing 615/732 atomic regions from SNP 184235 to 184835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,445 DEBUG Processing 1/666 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,472 DEBUG Processing 571/705 atomic regions from SNP 171030 to 171630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,548 DEBUG Processing 644/748 atomic regions from SNP 192947 to 193547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,604 DEBUG Processing 616/732 atomic regions from SNP 184535 to 185135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,666 DEBUG Processing 2/666 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,717 DEBUG Processing 572/705 atomic regions from SNP 171330 to 171930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,773 DEBUG Processing 645/748 atomic regions from SNP 193247 to 193847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,827 DEBUG Processing 617/732 atomic regions from SNP 184835 to 185435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,873 DEBUG Processing 3/666 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,946 DEBUG Processing 573/705 atomic regions from SNP 171630 to 172230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,994 DEBUG Processing 646/748 atomic regions from SNP 193547 to 194147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,044 DEBUG Processing 618/732 atomic regions from SNP 185135 to 185735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,083 DEBUG Processing 4/666 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,171 DEBUG Processing 574/705 atomic regions from SNP 171930 to 172530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,213 DEBUG Processing 647/748 atomic regions from SNP 193847 to 194447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,261 DEBUG Processing 619/732 atomic regions from SNP 185435 to 186035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,311 DEBUG Processing 5/666 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,397 DEBUG Processing 575/705 atomic regions from SNP 172230 to 172830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,434 DEBUG Processing 648/748 atomic regions from SNP 194147 to 194747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,490 DEBUG Processing 620/732 atomic regions from SNP 185735 to 186335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,522 DEBUG Processing 6/666 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,626 DEBUG Processing 576/705 atomic regions from SNP 172530 to 173130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,656 DEBUG Processing 649/748 atomic regions from SNP 194447 to 195047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,730 DEBUG Processing 7/666 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,742 DEBUG Processing 621/732 atomic regions from SNP 186035 to 186635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,855 DEBUG Processing 577/705 atomic regions from SNP 172830 to 173430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,880 DEBUG Processing 650/748 atomic regions from SNP 194747 to 195347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,936 DEBUG Processing 8/666 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,996 DEBUG Processing 622/732 atomic regions from SNP 186335 to 186935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,087 DEBUG Processing 578/705 atomic regions from SNP 173130 to 173730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,107 DEBUG Processing 651/748 atomic regions from SNP 195047 to 195647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,146 DEBUG Processing 9/666 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,246 DEBUG Processing 623/732 atomic regions from SNP 186635 to 187235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,313 DEBUG Processing 579/705 atomic regions from SNP 173430 to 174030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,327 DEBUG Processing 652/748 atomic regions from SNP 195347 to 195947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,353 DEBUG Processing 10/666 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,499 DEBUG Processing 624/732 atomic regions from SNP 186935 to 187535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,540 DEBUG Processing 580/705 atomic regions from SNP 173730 to 174330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,547 DEBUG Processing 653/748 atomic regions from SNP 195647 to 196247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,562 DEBUG Processing 11/666 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,754 DEBUG Processing 625/732 atomic regions from SNP 187235 to 187835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,765 DEBUG Processing 581/705 atomic regions from SNP 174030 to 174630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,766 DEBUG Processing 654/748 atomic regions from SNP 195947 to 196547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,770 DEBUG Processing 12/666 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,979 DEBUG Processing 13/666 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,986 DEBUG Processing 655/748 atomic regions from SNP 196247 to 196847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,992 DEBUG Processing 582/705 atomic regions from SNP 174330 to 174930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,006 DEBUG Processing 626/732 atomic regions from SNP 187535 to 188135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,197 DEBUG Processing 14/666 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,207 DEBUG Processing 656/748 atomic regions from SNP 196547 to 197147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,246 DEBUG Processing 583/705 atomic regions from SNP 174630 to 175230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,257 DEBUG Processing 627/732 atomic regions from SNP 187835 to 188435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,407 DEBUG Processing 15/666 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,426 DEBUG Processing 657/748 atomic regions from SNP 196847 to 197447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,499 DEBUG Processing 584/705 atomic regions from SNP 174930 to 175530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,519 DEBUG Processing 628/732 atomic regions from SNP 188135 to 188735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,615 DEBUG Processing 16/666 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,649 DEBUG Processing 658/748 atomic regions from SNP 197147 to 197747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,734 DEBUG Processing 585/705 atomic regions from SNP 175230 to 175830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,751 DEBUG Processing 629/732 atomic regions from SNP 188435 to 189035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,820 DEBUG Processing 17/666 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,888 DEBUG Processing 659/748 atomic regions from SNP 197447 to 198047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,964 DEBUG Processing 586/705 atomic regions from SNP 175530 to 176130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,972 DEBUG Processing 630/732 atomic regions from SNP 188735 to 189335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,024 DEBUG Processing 18/666 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,110 DEBUG Processing 660/748 atomic regions from SNP 197747 to 198347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,198 DEBUG Processing 631/732 atomic regions from SNP 189035 to 189635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,204 DEBUG Processing 587/705 atomic regions from SNP 175830 to 176430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,230 DEBUG Processing 19/666 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,331 DEBUG Processing 661/748 atomic regions from SNP 198047 to 198647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,419 DEBUG Processing 632/732 atomic regions from SNP 189335 to 189935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,434 DEBUG Processing 20/666 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,446 DEBUG Processing 588/705 atomic regions from SNP 176130 to 176730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,555 DEBUG Processing 662/748 atomic regions from SNP 198347 to 198947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,641 DEBUG Processing 21/666 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,648 DEBUG Processing 633/732 atomic regions from SNP 189635 to 190235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,704 DEBUG Processing 589/705 atomic regions from SNP 176430 to 177030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,780 DEBUG Processing 663/748 atomic regions from SNP 198647 to 199247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,849 DEBUG Processing 22/666 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,875 DEBUG Processing 634/732 atomic regions from SNP 189935 to 190535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,972 DEBUG Processing 590/705 atomic regions from SNP 176730 to 177330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,008 DEBUG Processing 664/748 atomic regions from SNP 198947 to 199547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,060 DEBUG Processing 23/666 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,103 DEBUG Processing 635/732 atomic regions from SNP 190235 to 190835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,234 DEBUG Processing 665/748 atomic regions from SNP 199247 to 199847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,236 DEBUG Processing 591/705 atomic regions from SNP 177030 to 177630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,271 DEBUG Processing 24/666 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,327 DEBUG Processing 636/732 atomic regions from SNP 190535 to 191135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,466 DEBUG Processing 666/748 atomic regions from SNP 199547 to 200147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,493 DEBUG Processing 25/666 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,512 DEBUG Processing 592/705 atomic regions from SNP 177330 to 177930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,553 DEBUG Processing 637/732 atomic regions from SNP 190835 to 191435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,698 DEBUG Processing 667/748 atomic regions from SNP 199847 to 200447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,712 DEBUG Processing 26/666 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,779 DEBUG Processing 638/732 atomic regions from SNP 191135 to 191735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,789 DEBUG Processing 593/705 atomic regions from SNP 177630 to 178230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,927 DEBUG Processing 668/748 atomic regions from SNP 200147 to 200747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,933 DEBUG Processing 27/666 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,002 DEBUG Processing 639/732 atomic regions from SNP 191435 to 192035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,059 DEBUG Processing 594/705 atomic regions from SNP 177930 to 178530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,147 DEBUG Processing 28/666 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,175 DEBUG Processing 669/748 atomic regions from SNP 200447 to 201047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,226 DEBUG Processing 640/732 atomic regions from SNP 191735 to 192335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,320 DEBUG Processing 595/705 atomic regions from SNP 178230 to 178830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,363 DEBUG Processing 29/666 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,426 DEBUG Processing 670/748 atomic regions from SNP 200747 to 201347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,445 DEBUG Processing 641/732 atomic regions from SNP 192035 to 192635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,575 DEBUG Processing 30/666 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,586 DEBUG Processing 596/705 atomic regions from SNP 178530 to 179130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,657 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:51:54,658 DEBUG Processing 671/748 atomic regions from SNP 201047 to 201647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,659 DEBUG chr9: Signal quantile: 0.990. signal threshold: 15. Best RMSEA: 0.014 2025-01-31 09:51:54,670 DEBUG Processing 642/732 atomic regions from SNP 192335 to 192935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,792 DEBUG Processing 31/666 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,866 DEBUG Processing 597/705 atomic regions from SNP 178830 to 179430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,887 DEBUG Processing 672/748 atomic regions from SNP 201347 to 201947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,892 DEBUG Processing 643/732 atomic regions from SNP 192635 to 193235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,002 DEBUG Processing 32/666 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,123 DEBUG Processing 644/732 atomic regions from SNP 192935 to 193535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,134 DEBUG Processing 673/748 atomic regions from SNP 201647 to 202247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,140 DEBUG Processing 598/705 atomic regions from SNP 179130 to 179730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,214 DEBUG Processing 33/666 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,346 DEBUG Processing 645/732 atomic regions from SNP 193235 to 193835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,380 DEBUG Processing 674/748 atomic regions from SNP 201947 to 202547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,405 DEBUG Processing 599/705 atomic regions from SNP 179430 to 180030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,424 DEBUG Processing 34/666 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,563 DEBUG Processing 646/732 atomic regions from SNP 193535 to 194135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,608 DEBUG Processing 675/748 atomic regions from SNP 202247 to 202847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,645 DEBUG Processing 35/666 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,648 DEBUG Processing 600/705 atomic regions from SNP 179730 to 180330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,780 DEBUG Processing 647/732 atomic regions from SNP 193835 to 194435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,841 DEBUG Processing 676/748 atomic regions from SNP 202547 to 203147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,869 DEBUG Processing 36/666 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,909 DEBUG Processing 601/705 atomic regions from SNP 180030 to 180630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,992 DEBUG Processing 648/732 atomic regions from SNP 194135 to 194735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,066 DEBUG Processing 677/748 atomic regions from SNP 202847 to 203447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,085 DEBUG Processing 37/666 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,170 DEBUG Processing 602/705 atomic regions from SNP 180330 to 180930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,212 DEBUG Processing 649/732 atomic regions from SNP 194435 to 195035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,287 DEBUG Processing 678/748 atomic regions from SNP 203147 to 203747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,296 DEBUG Processing 38/666 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,417 DEBUG Processing 603/705 atomic regions from SNP 180630 to 181230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,434 DEBUG Processing 650/732 atomic regions from SNP 194735 to 195335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,508 DEBUG Processing 39/666 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,510 DEBUG Processing 679/748 atomic regions from SNP 203447 to 204047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,655 DEBUG Processing 651/732 atomic regions from SNP 195035 to 195635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,666 DEBUG Processing 604/705 atomic regions from SNP 180930 to 181530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,731 DEBUG Processing 40/666 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,731 DEBUG Processing 680/748 atomic regions from SNP 203747 to 204347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,831 DEBUG chr9 total SNP count: 217908 2025-01-31 09:51:56,831 DEBUG chr9 length: 124595110 2025-01-31 09:51:56,831 DEBUG ----------------------------------------- 2025-01-31 09:51:56,831 INFO Processing SNPs in chr9 2025-01-31 09:51:56,880 DEBUG Processing 652/732 atomic regions from SNP 195335 to 195935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,897 DEBUG Processing 605/705 atomic regions from SNP 181230 to 181830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,947 DEBUG Processing 41/666 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,958 DEBUG Processing 681/748 atomic regions from SNP 204047 to 204647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,049 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 217908)] 2025-01-31 09:51:57,101 DEBUG Processing 653/732 atomic regions from SNP 195635 to 196235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,130 DEBUG Processing 606/705 atomic regions from SNP 181530 to 182130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,163 DEBUG Processing 42/666 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,191 DEBUG Processing 682/748 atomic regions from SNP 204347 to 204947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,199 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:57,320 DEBUG Processing 654/732 atomic regions from SNP 195935 to 196535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,359 DEBUG Processing 607/705 atomic regions from SNP 181830 to 182430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,376 DEBUG Processing 43/666 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,415 DEBUG Processing 683/748 atomic regions from SNP 204647 to 205247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,537 DEBUG Processing 655/732 atomic regions from SNP 196235 to 196835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,590 DEBUG Processing 608/705 atomic regions from SNP 182130 to 182730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,591 DEBUG Processing 44/666 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,640 DEBUG Processing 684/748 atomic regions from SNP 204947 to 205547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,756 DEBUG Processing 656/732 atomic regions from SNP 196535 to 197135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,808 DEBUG Processing 45/666 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,821 DEBUG Processing 609/705 atomic regions from SNP 182430 to 183030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,865 DEBUG Processing 685/748 atomic regions from SNP 205247 to 205847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,003 DEBUG Processing 657/732 atomic regions from SNP 196835 to 197435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,024 DEBUG Processing 46/666 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,053 DEBUG Processing 610/705 atomic regions from SNP 182730 to 183330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,087 DEBUG Processing 686/748 atomic regions from SNP 205547 to 206147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,240 DEBUG Processing 47/666 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,260 DEBUG Processing 658/732 atomic regions from SNP 197135 to 197735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,292 DEBUG Processing 611/705 atomic regions from SNP 183030 to 183630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,308 DEBUG Processing 687/748 atomic regions from SNP 205847 to 206447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,456 DEBUG Processing 48/666 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,513 DEBUG Processing 659/732 atomic regions from SNP 197435 to 198035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,523 DEBUG Processing 612/705 atomic regions from SNP 183330 to 183930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,543 DEBUG Processing 688/748 atomic regions from SNP 206147 to 206747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,676 DEBUG Processing 49/666 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,760 DEBUG Processing 613/705 atomic regions from SNP 183630 to 184230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,761 DEBUG Processing 660/732 atomic regions from SNP 197735 to 198335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,769 DEBUG Processing 689/748 atomic regions from SNP 206447 to 207047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,882 DEBUG Processing 50/666 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,987 DEBUG Processing 614/705 atomic regions from SNP 183930 to 184530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,992 DEBUG Processing 690/748 atomic regions from SNP 206747 to 207347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,002 DEBUG Processing 661/732 atomic regions from SNP 198035 to 198635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,090 DEBUG Processing 51/666 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,216 DEBUG Processing 691/748 atomic regions from SNP 207047 to 207647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,227 DEBUG Processing 615/705 atomic regions from SNP 184230 to 184830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,234 DEBUG Processing 662/732 atomic regions from SNP 198335 to 198935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,297 DEBUG Processing 52/666 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,441 DEBUG Processing 692/748 atomic regions from SNP 207347 to 207947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,461 DEBUG Processing 663/732 atomic regions from SNP 198635 to 199235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,472 DEBUG Processing 616/705 atomic regions from SNP 184530 to 185130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,528 DEBUG Processing 53/666 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,666 DEBUG Processing 693/748 atomic regions from SNP 207647 to 208247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,693 DEBUG Processing 664/732 atomic regions from SNP 198935 to 199535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,734 DEBUG Processing 617/705 atomic regions from SNP 184830 to 185430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,740 DEBUG Processing 54/666 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,891 DEBUG Processing 694/748 atomic regions from SNP 207947 to 208547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,920 DEBUG Processing 665/732 atomic regions from SNP 199235 to 199835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,959 DEBUG Processing 55/666 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,971 DEBUG Processing 618/705 atomic regions from SNP 185130 to 185730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,115 DEBUG Processing 695/748 atomic regions from SNP 208247 to 208847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,148 DEBUG Processing 666/732 atomic regions from SNP 199535 to 200135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,178 DEBUG Processing 56/666 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,208 DEBUG Processing 619/705 atomic regions from SNP 185430 to 186030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,337 DEBUG Processing 696/748 atomic regions from SNP 208547 to 209147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,373 DEBUG Processing 667/732 atomic regions from SNP 199835 to 200435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,393 DEBUG Processing 57/666 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,436 DEBUG Processing 620/705 atomic regions from SNP 185730 to 186330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,561 DEBUG Processing 697/748 atomic regions from SNP 208847 to 209447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,602 DEBUG Processing 668/732 atomic regions from SNP 200135 to 200735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,606 DEBUG Processing 58/666 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,667 DEBUG Processing 621/705 atomic regions from SNP 186030 to 186630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,787 DEBUG Processing 698/748 atomic regions from SNP 209147 to 209747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,821 DEBUG Processing 59/666 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,830 DEBUG Processing 669/732 atomic regions from SNP 200435 to 201035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,892 DEBUG Processing 622/705 atomic regions from SNP 186330 to 186930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,011 DEBUG Processing 699/748 atomic regions from SNP 209447 to 210047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,033 DEBUG Processing 60/666 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,056 DEBUG Processing 670/732 atomic regions from SNP 200735 to 201335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,111 DEBUG Processing 623/705 atomic regions from SNP 186630 to 187230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,235 DEBUG Processing 700/748 atomic regions from SNP 209747 to 210347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,245 DEBUG Processing 61/666 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,283 DEBUG Processing 671/732 atomic regions from SNP 201035 to 201635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,334 DEBUG Processing 624/705 atomic regions from SNP 186930 to 187530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,453 DEBUG Processing 62/666 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,456 DEBUG Processing 701/748 atomic regions from SNP 210047 to 210647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,529 DEBUG Processing 672/732 atomic regions from SNP 201335 to 201935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,570 DEBUG Processing 625/705 atomic regions from SNP 187230 to 187830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,662 DEBUG Processing 63/666 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,675 DEBUG Processing 702/748 atomic regions from SNP 210347 to 210947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,798 DEBUG Processing 673/732 atomic regions from SNP 201635 to 202235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,799 DEBUG Processing 626/705 atomic regions from SNP 187530 to 188130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,889 DEBUG Processing 703/748 atomic regions from SNP 210647 to 211247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,894 DEBUG Processing 64/666 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,030 DEBUG Processing 627/705 atomic regions from SNP 187830 to 188430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,072 DEBUG Processing 674/732 atomic regions from SNP 201935 to 202535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,103 DEBUG Processing 65/666 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,126 DEBUG Processing 704/748 atomic regions from SNP 210947 to 211547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,280 DEBUG Processing 628/705 atomic regions from SNP 188130 to 188730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,316 DEBUG Processing 66/666 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,348 DEBUG Processing 675/732 atomic regions from SNP 202235 to 202835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,370 DEBUG Processing 705/748 atomic regions from SNP 211247 to 211847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,531 DEBUG Processing 67/666 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,536 DEBUG Processing 629/705 atomic regions from SNP 188430 to 189030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,604 DEBUG Processing 706/748 atomic regions from SNP 211547 to 212147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,608 DEBUG Processing 676/732 atomic regions from SNP 202535 to 203135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,748 DEBUG Processing 68/666 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,786 DEBUG Processing 630/705 atomic regions from SNP 188730 to 189330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,848 DEBUG Processing 707/748 atomic regions from SNP 211847 to 212447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,866 DEBUG Processing 677/732 atomic regions from SNP 202835 to 203435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,957 DEBUG Processing 69/666 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,030 DEBUG Processing 631/705 atomic regions from SNP 189030 to 189630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,068 DEBUG Processing 708/748 atomic regions from SNP 212147 to 212747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,117 DEBUG Processing 678/732 atomic regions from SNP 203135 to 203735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,164 DEBUG Processing 70/666 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,268 DEBUG Processing 632/705 atomic regions from SNP 189330 to 189930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,290 DEBUG Processing 709/748 atomic regions from SNP 212447 to 213047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,373 DEBUG Processing 679/732 atomic regions from SNP 203435 to 204035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,388 DEBUG Processing 71/666 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,495 DEBUG Processing 633/705 atomic regions from SNP 189630 to 190230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,510 DEBUG Processing 710/748 atomic regions from SNP 212747 to 213347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,618 DEBUG Processing 72/666 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,636 DEBUG Processing 680/732 atomic regions from SNP 203735 to 204335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,728 DEBUG Processing 711/748 atomic regions from SNP 213047 to 213647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,736 DEBUG Processing 634/705 atomic regions from SNP 189930 to 190530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,843 DEBUG Processing 73/666 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,896 DEBUG Processing 681/732 atomic regions from SNP 204035 to 204635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,943 DEBUG Processing 712/748 atomic regions from SNP 213347 to 213947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,985 DEBUG Processing 635/705 atomic regions from SNP 190230 to 190830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,081 DEBUG Processing 74/666 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,142 DEBUG Processing 682/732 atomic regions from SNP 204335 to 204935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,161 DEBUG Processing 713/748 atomic regions from SNP 213647 to 214247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,211 DEBUG Processing 636/705 atomic regions from SNP 190530 to 191130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,317 DEBUG Processing 75/666 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,374 DEBUG Processing 683/732 atomic regions from SNP 204635 to 205235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,381 DEBUG Processing 714/748 atomic regions from SNP 213947 to 214547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,440 DEBUG Processing 637/705 atomic regions from SNP 190830 to 191430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,556 DEBUG Processing 76/666 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,601 DEBUG Processing 715/748 atomic regions from SNP 214247 to 214847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,609 DEBUG Processing 684/732 atomic regions from SNP 204935 to 205535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,669 DEBUG Processing 638/705 atomic regions from SNP 191130 to 191730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,797 DEBUG Processing 77/666 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,820 DEBUG Processing 716/748 atomic regions from SNP 214547 to 215147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,837 DEBUG Processing 685/732 atomic regions from SNP 205235 to 205835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,894 DEBUG Processing 639/705 atomic regions from SNP 191430 to 192030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,037 DEBUG Processing 78/666 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,043 DEBUG Processing 717/748 atomic regions from SNP 214847 to 215447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,084 DEBUG Processing 686/732 atomic regions from SNP 205535 to 206135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,123 DEBUG Processing 640/705 atomic regions from SNP 191730 to 192330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,266 DEBUG Processing 718/748 atomic regions from SNP 215147 to 215747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,278 DEBUG Processing 79/666 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,342 DEBUG Processing 687/732 atomic regions from SNP 205835 to 206435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,353 DEBUG Processing 641/705 atomic regions from SNP 192030 to 192630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,481 DEBUG Processing 719/748 atomic regions from SNP 215447 to 216047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,511 DEBUG Processing 80/666 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,586 DEBUG Processing 642/705 atomic regions from SNP 192330 to 192930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,609 DEBUG Processing 688/732 atomic regions from SNP 206135 to 206735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,699 DEBUG Processing 720/748 atomic regions from SNP 215747 to 216347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,722 DEBUG Processing 81/666 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,823 DEBUG Processing 643/705 atomic regions from SNP 192630 to 193230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,878 DEBUG Processing 689/732 atomic regions from SNP 206435 to 207035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,922 DEBUG Processing 721/748 atomic regions from SNP 216047 to 216647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,951 DEBUG Processing 82/666 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,046 DEBUG Processing 644/705 atomic regions from SNP 192930 to 193530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,140 DEBUG Processing 690/732 atomic regions from SNP 206735 to 207335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,146 DEBUG Processing 722/748 atomic regions from SNP 216347 to 216947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,190 DEBUG Processing 83/666 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,264 DEBUG Processing 645/705 atomic regions from SNP 193230 to 193830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,369 DEBUG Processing 723/748 atomic regions from SNP 216647 to 217247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,394 DEBUG Processing 691/732 atomic regions from SNP 207035 to 207635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,428 DEBUG Processing 84/666 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,491 DEBUG Processing 646/705 atomic regions from SNP 193530 to 194130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,586 DEBUG Processing 724/748 atomic regions from SNP 216947 to 217547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,657 DEBUG Processing 692/732 atomic regions from SNP 207335 to 207935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,667 DEBUG Processing 85/666 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,737 DEBUG Processing 647/705 atomic regions from SNP 193830 to 194430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,805 DEBUG Processing 725/748 atomic regions from SNP 217247 to 217847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,887 DEBUG Processing 86/666 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,918 DEBUG Processing 693/732 atomic regions from SNP 207635 to 208235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,984 DEBUG Processing 648/705 atomic regions from SNP 194130 to 194730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,020 DEBUG Processing 726/748 atomic regions from SNP 217547 to 218147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,093 DEBUG Processing 87/666 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,182 DEBUG Processing 694/732 atomic regions from SNP 207935 to 208535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,205 DEBUG Processing 649/705 atomic regions from SNP 194430 to 195030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,237 DEBUG Processing 727/748 atomic regions from SNP 217847 to 218447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,301 DEBUG Processing 88/666 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,427 DEBUG Processing 650/705 atomic regions from SNP 194730 to 195330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,441 DEBUG Processing 695/732 atomic regions from SNP 208235 to 208835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,469 DEBUG Processing 728/748 atomic regions from SNP 218147 to 218747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,513 DEBUG Processing 89/666 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,652 DEBUG Processing 651/705 atomic regions from SNP 195030 to 195630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,706 DEBUG Processing 696/732 atomic regions from SNP 208535 to 209135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,730 DEBUG Processing 90/666 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,735 DEBUG Processing 729/748 atomic regions from SNP 218447 to 219047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,879 DEBUG Processing 652/705 atomic regions from SNP 195330 to 195930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,947 DEBUG Processing 91/666 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,964 DEBUG Processing 697/732 atomic regions from SNP 208835 to 209435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,004 DEBUG Processing 730/748 atomic regions from SNP 218747 to 219347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,108 DEBUG Processing 653/705 atomic regions from SNP 195630 to 196230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,166 DEBUG Processing 92/666 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,229 DEBUG Processing 698/732 atomic regions from SNP 209135 to 209735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,263 DEBUG Processing 731/748 atomic regions from SNP 219047 to 219647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,343 DEBUG Processing 654/705 atomic regions from SNP 195930 to 196530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,381 DEBUG Processing 93/666 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,484 DEBUG Processing 699/732 atomic regions from SNP 209435 to 210035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,514 DEBUG Processing 732/748 atomic regions from SNP 219347 to 219947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,575 DEBUG Processing 655/705 atomic regions from SNP 196230 to 196830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,596 DEBUG Processing 94/666 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,734 DEBUG Processing 700/732 atomic regions from SNP 209735 to 210335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,773 DEBUG Processing 733/748 atomic regions from SNP 219647 to 220247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,820 DEBUG Processing 656/705 atomic regions from SNP 196530 to 197130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,820 DEBUG Processing 95/666 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,992 DEBUG Processing 701/732 atomic regions from SNP 210035 to 210635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,013 DEBUG Processing 734/748 atomic regions from SNP 219947 to 220547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,040 DEBUG Processing 96/666 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,059 DEBUG Processing 657/705 atomic regions from SNP 196830 to 197430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,248 DEBUG Processing 702/732 atomic regions from SNP 210335 to 210935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,260 DEBUG Processing 735/748 atomic regions from SNP 220247 to 220847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,268 DEBUG Processing 97/666 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,311 DEBUG Processing 658/705 atomic regions from SNP 197130 to 197730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,492 DEBUG Processing 98/666 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,499 DEBUG Processing 703/732 atomic regions from SNP 210635 to 211235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,529 DEBUG Processing 736/748 atomic regions from SNP 220547 to 221147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,552 DEBUG Processing 659/705 atomic regions from SNP 197430 to 198030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,710 DEBUG Processing 99/666 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,737 DEBUG Processing 704/732 atomic regions from SNP 210935 to 211535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,793 DEBUG Processing 660/705 atomic regions from SNP 197730 to 198330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,801 DEBUG Processing 737/748 atomic regions from SNP 220847 to 221447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,922 DEBUG Processing 100/666 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,973 DEBUG Processing 705/732 atomic regions from SNP 211235 to 211835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,031 DEBUG Processing 661/705 atomic regions from SNP 198030 to 198630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,068 DEBUG Processing 738/748 atomic regions from SNP 221147 to 221747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,131 DEBUG Processing 101/666 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,211 DEBUG Processing 706/732 atomic regions from SNP 211535 to 212135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,262 DEBUG Processing 662/705 atomic regions from SNP 198330 to 198930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,340 DEBUG Processing 739/748 atomic regions from SNP 221447 to 222047 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,346 DEBUG Processing 102/666 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,469 DEBUG Processing 707/732 atomic regions from SNP 211835 to 212435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,498 DEBUG Processing 663/705 atomic regions from SNP 198630 to 199230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,560 DEBUG Processing 103/666 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,606 DEBUG Processing 740/748 atomic regions from SNP 221747 to 222347 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,718 DEBUG Processing 708/732 atomic regions from SNP 212135 to 212735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,735 DEBUG Processing 664/705 atomic regions from SNP 198930 to 199530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,775 DEBUG Processing 104/666 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,861 DEBUG Processing 741/748 atomic regions from SNP 222047 to 222647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,949 DEBUG Processing 709/732 atomic regions from SNP 212435 to 213035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,970 DEBUG Processing 665/705 atomic regions from SNP 199230 to 199830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,991 DEBUG Processing 105/666 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,085 DEBUG Processing 742/748 atomic regions from SNP 222347 to 222947 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,185 DEBUG Processing 710/732 atomic regions from SNP 212735 to 213335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,209 DEBUG Processing 666/705 atomic regions from SNP 199530 to 200130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,213 DEBUG Processing 106/666 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,305 DEBUG Processing 743/748 atomic regions from SNP 222647 to 223247 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,423 DEBUG Processing 711/732 atomic regions from SNP 213035 to 213635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,452 DEBUG Processing 667/705 atomic regions from SNP 199830 to 200430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,462 DEBUG Processing 107/666 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,526 DEBUG Processing 744/748 atomic regions from SNP 222947 to 223547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,664 DEBUG Processing 712/732 atomic regions from SNP 213335 to 213935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,695 DEBUG Processing 668/705 atomic regions from SNP 200130 to 200730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,701 DEBUG Processing 108/666 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,750 DEBUG Processing 745/748 atomic regions from SNP 223247 to 223847 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,900 DEBUG Processing 713/732 atomic regions from SNP 213635 to 214235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,921 DEBUG Processing 109/666 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,933 DEBUG Processing 669/705 atomic regions from SNP 200430 to 201030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,973 DEBUG Processing 746/748 atomic regions from SNP 223547 to 224147 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,136 DEBUG Processing 714/732 atomic regions from SNP 213935 to 214535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,141 DEBUG Processing 110/666 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,172 DEBUG Processing 670/705 atomic regions from SNP 200730 to 201330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,199 DEBUG Processing 747/748 atomic regions from SNP 223847 to 224447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,380 DEBUG Processing 111/666 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,393 DEBUG Processing 715/732 atomic regions from SNP 214235 to 214835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,412 DEBUG Processing 671/705 atomic regions from SNP 201030 to 201630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,429 DEBUG Processing 748/748 atomic regions from SNP 224147 to 224747 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,567 DEBUG Unique SNPs positions in subchromosome 1: 224748 2025-01-31 09:52:12,612 DEBUG Processing 112/666 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,631 DEBUG Processing 716/732 atomic regions from SNP 214535 to 215135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,648 DEBUG Processing 672/705 atomic regions from SNP 201330 to 201930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,824 DEBUG Processing 113/666 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,873 DEBUG Processing 717/732 atomic regions from SNP 214835 to 215435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,880 DEBUG Processing 673/705 atomic regions from SNP 201630 to 202230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,040 DEBUG Processing 114/666 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,121 DEBUG Processing 674/705 atomic regions from SNP 201930 to 202530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,124 DEBUG Processing 718/732 atomic regions from SNP 215135 to 215735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,252 DEBUG Processing 115/666 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,347 DEBUG Processing 719/732 atomic regions from SNP 215435 to 216035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,373 DEBUG Processing 675/705 atomic regions from SNP 202230 to 202830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,462 DEBUG Processing 116/666 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,597 DEBUG Processing 720/732 atomic regions from SNP 215735 to 216335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,604 DEBUG Processing 676/705 atomic regions from SNP 202530 to 203130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,675 DEBUG Processing 117/666 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,832 DEBUG Processing 721/732 atomic regions from SNP 216035 to 216635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,841 DEBUG Processing 677/705 atomic regions from SNP 202830 to 203430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,888 DEBUG Processing 118/666 atomic regions from SNP 35217 to 35817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,062 DEBUG Processing 722/732 atomic regions from SNP 216335 to 216935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,070 DEBUG Processing 678/705 atomic regions from SNP 203130 to 203730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,113 DEBUG Processing 119/666 atomic regions from SNP 35517 to 36117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,293 DEBUG Processing 723/732 atomic regions from SNP 216635 to 217235 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,328 DEBUG Processing 120/666 atomic regions from SNP 35817 to 36417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,328 DEBUG Processing 679/705 atomic regions from SNP 203430 to 204030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,520 DEBUG Processing 724/732 atomic regions from SNP 216935 to 217535 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,545 DEBUG Processing 121/666 atomic regions from SNP 36117 to 36717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,589 DEBUG Processing 680/705 atomic regions from SNP 203730 to 204330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,747 DEBUG Processing 725/732 atomic regions from SNP 217235 to 217835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,756 DEBUG Processing 122/666 atomic regions from SNP 36417 to 37017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,854 DEBUG Processing 681/705 atomic regions from SNP 204030 to 204630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,962 DEBUG Processing 123/666 atomic regions from SNP 36717 to 37317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,974 DEBUG Processing 726/732 atomic regions from SNP 217535 to 218135 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,119 DEBUG Processing 682/705 atomic regions from SNP 204330 to 204930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,166 DEBUG Processing 124/666 atomic regions from SNP 37017 to 37617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,200 DEBUG Processing 727/732 atomic regions from SNP 217835 to 218435 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,372 DEBUG Processing 125/666 atomic regions from SNP 37317 to 37917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,377 DEBUG Processing 683/705 atomic regions from SNP 204630 to 205230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,423 DEBUG Processing 728/732 atomic regions from SNP 218135 to 218735 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,584 DEBUG Processing 126/666 atomic regions from SNP 37617 to 38217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,641 DEBUG Processing 684/705 atomic regions from SNP 204930 to 205530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,645 DEBUG Processing 729/732 atomic regions from SNP 218435 to 219035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,800 DEBUG Processing 127/666 atomic regions from SNP 37917 to 38517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,867 DEBUG Processing 730/732 atomic regions from SNP 218735 to 219335 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,899 DEBUG Processing 685/705 atomic regions from SNP 205230 to 205830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,019 DEBUG Processing 128/666 atomic regions from SNP 38217 to 38817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,096 DEBUG Processing 731/732 atomic regions from SNP 219035 to 219635 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,162 DEBUG Processing 686/705 atomic regions from SNP 205530 to 206130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,238 DEBUG Processing 129/666 atomic regions from SNP 38517 to 39117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,319 DEBUG Processing 732/732 atomic regions from SNP 219335 to 219935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,402 DEBUG Processing 687/705 atomic regions from SNP 205830 to 206430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,451 DEBUG Processing 130/666 atomic regions from SNP 38817 to 39417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,455 DEBUG Unique SNPs positions in subchromosome 1: 219936 2025-01-31 09:52:16,651 DEBUG Processing 688/705 atomic regions from SNP 206130 to 206730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,662 DEBUG Processing 131/666 atomic regions from SNP 39117 to 39717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,901 DEBUG Processing 132/666 atomic regions from SNP 39417 to 40017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,913 DEBUG Processing 689/705 atomic regions from SNP 206430 to 207030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,130 DEBUG Processing 133/666 atomic regions from SNP 39717 to 40317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,166 DEBUG Processing 690/705 atomic regions from SNP 206730 to 207330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,349 DEBUG Processing 134/666 atomic regions from SNP 40017 to 40617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,403 DEBUG Processing 691/705 atomic regions from SNP 207030 to 207630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,566 DEBUG Processing 135/666 atomic regions from SNP 40317 to 40917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,638 DEBUG Processing 692/705 atomic regions from SNP 207330 to 207930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,810 DEBUG Processing 136/666 atomic regions from SNP 40617 to 41217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,867 DEBUG Processing 693/705 atomic regions from SNP 207630 to 208230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,041 DEBUG Processing 137/666 atomic regions from SNP 40917 to 41517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,090 DEBUG Processing 694/705 atomic regions from SNP 207930 to 208530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,260 DEBUG Processing 138/666 atomic regions from SNP 41217 to 41817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,321 DEBUG Processing 695/705 atomic regions from SNP 208230 to 208830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,496 DEBUG Processing 139/666 atomic regions from SNP 41517 to 42117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,554 DEBUG Processing 696/705 atomic regions from SNP 208530 to 209130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,728 DEBUG Processing 140/666 atomic regions from SNP 41817 to 42417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,788 DEBUG Processing 697/705 atomic regions from SNP 208830 to 209430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,963 DEBUG Processing 141/666 atomic regions from SNP 42117 to 42717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,016 DEBUG Processing 698/705 atomic regions from SNP 209130 to 209730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,186 DEBUG Processing 142/666 atomic regions from SNP 42417 to 43017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,233 DEBUG Processing 699/705 atomic regions from SNP 209430 to 210030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,292 DEBUG Subchromosome time: 202.78116027102806, subchromosome SNPs: 224748 2025-01-31 09:52:19,293 DEBUG Estimated BADs: [1.76, 0.88, 1.76, 3.53, 1.76, 0.35, 0.88, 1.76, 3.53, 0.35, 1.76, 3.53, 17.64, 5.29, 1.76, 12.35, 1.76, 0.44, 0.88, 1.76, 0.88, 8.82, 3.53, 0.88] SNP counts: [52640, 8388, 3740, 6482, 5686, 5387, 11708, 4252, 8375, 2984, 17145, 7215, 3543, 1628, 15128, 211, 17219, 6887, 15929, 18901, 4790, 3606, 897, 2007] SNP IDs counts: [52640, 8388, 3740, 6482, 5686, 5387, 11708, 4252, 8375, 2984, 17145, 7215, 3543, 1628, 15128, 211, 17219, 6887, 15929, 18901, 4790, 3606, 897, 2007] Critical gap: 617729bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 33.15Mbp, 37.98Mbp, 40.11Mbp, 43.57Mbp, 46.72Mbp, 50.05Mbp, 56.97Mbp, 59.70Mbp, 64.16Mbp, 66.07Mbp, 75.63Mbp, 79.64Mbp, 81.49Mbp, 82.75Mbp, 91.08Mbp, 91.19Mbp, 100.65Mbp, 104.76Mbp, 113.79Mbp, 124.18Mbp, 126.90Mbp, 128.80Mbp, 129.35Mbp, 130.69Mbp] 2025-01-31 09:52:19,293 DEBUG chr10 time: 202.78176061494742 s 2025-01-31 09:52:19,396 DEBUG Processing 143/666 atomic regions from SNP 42717 to 43317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,421 DEBUG chr10: Fitting background model for 24 segments 2025-01-31 09:52:19,460 DEBUG Processing 700/705 atomic regions from SNP 209730 to 210330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,613 DEBUG Processing 144/666 atomic regions from SNP 43017 to 43617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,688 DEBUG Processing 701/705 atomic regions from SNP 210030 to 210630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,845 DEBUG Processing 145/666 atomic regions from SNP 43317 to 43917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,924 DEBUG Processing 702/705 atomic regions from SNP 210330 to 210930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,087 DEBUG Processing 146/666 atomic regions from SNP 43617 to 44217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,155 DEBUG Processing 703/705 atomic regions from SNP 210630 to 211230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,300 DEBUG Processing 147/666 atomic regions from SNP 43917 to 44517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,382 DEBUG Processing 704/705 atomic regions from SNP 210930 to 211530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,512 DEBUG Processing 148/666 atomic regions from SNP 44217 to 44817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,614 DEBUG Processing 705/705 atomic regions from SNP 211230 to 211830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,718 DEBUG Processing 149/666 atomic regions from SNP 44517 to 45117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,749 DEBUG Unique SNPs positions in subchromosome 3: 211831 2025-01-31 09:52:20,933 DEBUG Processing 150/666 atomic regions from SNP 44817 to 45417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,157 DEBUG Processing 151/666 atomic regions from SNP 45117 to 45717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,371 DEBUG Processing 152/666 atomic regions from SNP 45417 to 46017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,585 DEBUG Processing 153/666 atomic regions from SNP 45717 to 46317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,794 DEBUG Processing 154/666 atomic regions from SNP 46017 to 46617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,009 DEBUG Processing 155/666 atomic regions from SNP 46317 to 46917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,224 DEBUG Processing 156/666 atomic regions from SNP 46617 to 47217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,438 DEBUG Processing 157/666 atomic regions from SNP 46917 to 47517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,659 DEBUG Processing 158/666 atomic regions from SNP 47217 to 47817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,888 DEBUG Processing 159/666 atomic regions from SNP 47517 to 48117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,112 DEBUG Processing 160/666 atomic regions from SNP 47817 to 48417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,243 DEBUG Segmenting atomic regions: 2025-01-31 09:52:23,336 DEBUG Processing 1/725 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,354 DEBUG Processing 161/666 atomic regions from SNP 48117 to 48717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,555 DEBUG Processing 2/725 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,603 DEBUG Processing 162/666 atomic regions from SNP 48417 to 49017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,778 DEBUG Processing 3/725 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,821 DEBUG Processing 163/666 atomic regions from SNP 48717 to 49317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,997 DEBUG Processing 4/725 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,042 DEBUG Processing 164/666 atomic regions from SNP 49017 to 49617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,222 DEBUG Processing 5/725 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,260 DEBUG Processing 165/666 atomic regions from SNP 49317 to 49917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,448 DEBUG Processing 6/725 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,483 DEBUG Processing 166/666 atomic regions from SNP 49617 to 50217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,678 DEBUG Processing 7/725 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,719 DEBUG Processing 167/666 atomic regions from SNP 49917 to 50517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,906 DEBUG Processing 8/725 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,944 DEBUG Processing 168/666 atomic regions from SNP 50217 to 50817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,130 DEBUG Processing 9/725 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,164 DEBUG Processing 169/666 atomic regions from SNP 50517 to 51117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,353 DEBUG Processing 10/725 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,384 DEBUG Processing 170/666 atomic regions from SNP 50817 to 51417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,576 DEBUG Processing 11/725 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,605 DEBUG Processing 171/666 atomic regions from SNP 51117 to 51717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,797 DEBUG Processing 12/725 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,824 DEBUG Processing 172/666 atomic regions from SNP 51417 to 52017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,025 DEBUG Processing 13/725 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,044 DEBUG Processing 173/666 atomic regions from SNP 51717 to 52317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,250 DEBUG Processing 14/725 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,276 DEBUG Processing 174/666 atomic regions from SNP 52017 to 52617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,475 DEBUG Processing 15/725 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,503 DEBUG Processing 175/666 atomic regions from SNP 52317 to 52917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,692 DEBUG Processing 16/725 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,727 DEBUG Processing 176/666 atomic regions from SNP 52617 to 53217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,910 DEBUG Processing 17/725 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,943 DEBUG Processing 177/666 atomic regions from SNP 52917 to 53517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,124 DEBUG Processing 18/725 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,160 DEBUG Processing 178/666 atomic regions from SNP 53217 to 53817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,339 DEBUG Processing 19/725 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,371 DEBUG Processing 179/666 atomic regions from SNP 53517 to 54117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,563 DEBUG Processing 20/725 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,591 DEBUG Processing 180/666 atomic regions from SNP 53817 to 54417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,784 DEBUG Processing 21/725 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,808 DEBUG Processing 181/666 atomic regions from SNP 54117 to 54717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,003 DEBUG Processing 22/725 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,024 DEBUG Processing 182/666 atomic regions from SNP 54417 to 55017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,225 DEBUG Processing 23/725 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,250 DEBUG Processing 183/666 atomic regions from SNP 54717 to 55317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,439 DEBUG Processing 24/725 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,464 DEBUG Processing 184/666 atomic regions from SNP 55017 to 55617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,655 DEBUG Processing 25/725 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,675 DEBUG Processing 185/666 atomic regions from SNP 55317 to 55917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,873 DEBUG Processing 26/725 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,889 DEBUG Processing 186/666 atomic regions from SNP 55617 to 56217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,103 DEBUG Processing 27/725 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,108 DEBUG Processing 187/666 atomic regions from SNP 55917 to 56517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,319 DEBUG Processing 188/666 atomic regions from SNP 56217 to 56817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,340 DEBUG Processing 28/725 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,532 DEBUG Processing 189/666 atomic regions from SNP 56517 to 57117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,578 DEBUG Processing 29/725 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,741 DEBUG Processing 190/666 atomic regions from SNP 56817 to 57417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,794 DEBUG Processing 30/725 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,952 DEBUG Processing 191/666 atomic regions from SNP 57117 to 57717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,011 DEBUG Processing 31/725 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,167 DEBUG Processing 192/666 atomic regions from SNP 57417 to 58017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,225 DEBUG Processing 32/725 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,382 DEBUG Processing 193/666 atomic regions from SNP 57717 to 58317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,443 DEBUG Processing 33/725 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,597 DEBUG Processing 194/666 atomic regions from SNP 58017 to 58617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,661 DEBUG Processing 34/725 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,807 DEBUG Processing 195/666 atomic regions from SNP 58317 to 58917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,882 DEBUG Processing 35/725 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,014 DEBUG Processing 196/666 atomic regions from SNP 58617 to 59217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,100 DEBUG Processing 36/725 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,230 DEBUG Processing 197/666 atomic regions from SNP 58917 to 59517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,325 DEBUG Processing 37/725 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,462 DEBUG Processing 198/666 atomic regions from SNP 59217 to 59817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,545 DEBUG Processing 38/725 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,697 DEBUG Processing 199/666 atomic regions from SNP 59517 to 60117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,761 DEBUG Processing 39/725 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,899 DEBUG Subchromosome time: 208.6670335229719, subchromosome SNPs: 219936 2025-01-31 09:52:31,900 DEBUG Estimated BADs: [4.21, 0.35, 1.05, 4.21, 1.05, 4.21, 2.10, 8.41, 0.53, 1.05, 2.10, 0.70, 2.10, 0.42, 1.05, 21.03, 1.05, 14.72, 6.31, 2.10, 6.31, 18.93, 2.10, 4.21, 0.42, 1.05, 6.31, 2.10, 6.31, 2.10, 4.21, 12.62, 4.21, 2.10] SNP counts: [2700, 4284, 3988, 9915, 9598, 1747, 7214, 887, 5090, 5419, 6291, 11064, 11450, 5380, 12382, 98, 14911, 2258, 2469, 19313, 2063, 865, 16491, 4757, 10781, 3060, 5126, 6239, 2227, 8712, 4692, 8662, 4905, 4898] SNP IDs counts: [2700, 4284, 3988, 9915, 9598, 1747, 7214, 887, 5090, 5419, 6291, 11064, 11450, 5380, 12382, 98, 14911, 2258, 2469, 19313, 2063, 865, 16491, 4757, 10781, 3060, 5126, 6239, 2227, 8712, 4692, 8662, 4905, 4898] Critical gap: 618250bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.68Mbp, 7.37Mbp, 9.61Mbp, 14.88Mbp, 22.16Mbp, 23.09Mbp, 26.97Mbp, 27.46Mbp, 30.54Mbp, 33.59Mbp, 36.99Mbp, 43.67Mbp, 49.96Mbp, 53.23Mbp, 60.94Mbp, 60.99Mbp, 69.75Mbp, 70.92Mbp, 72.45Mbp, 83.56Mbp, 84.64Mbp, 85.08Mbp, 94.00Mbp, 96.58Mbp, 102.91Mbp, 104.57Mbp, 107.38Mbp, 110.68Mbp, 111.85Mbp, 116.87Mbp, 119.34Mbp, 123.97Mbp, 126.58Mbp, 129.40Mbp] 2025-01-31 09:52:31,900 DEBUG chr8 time: 208.6676022859756 s 2025-01-31 09:52:31,911 DEBUG Processing 200/666 atomic regions from SNP 59817 to 60417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,985 DEBUG Processing 40/725 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,041 DEBUG chr8: Fitting background model for 34 segments 2025-01-31 09:52:32,133 DEBUG Processing 201/666 atomic regions from SNP 60117 to 60717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,208 DEBUG Processing 41/725 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,342 DEBUG Processing 202/666 atomic regions from SNP 60417 to 61017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,428 DEBUG Processing 42/725 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,554 DEBUG Processing 203/666 atomic regions from SNP 60717 to 61317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,654 DEBUG Processing 43/725 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,766 DEBUG Processing 204/666 atomic regions from SNP 61017 to 61617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,865 DEBUG Processing 44/725 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,970 DEBUG Processing 205/666 atomic regions from SNP 61317 to 61917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,074 DEBUG Processing 45/725 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,175 DEBUG Processing 206/666 atomic regions from SNP 61617 to 62217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,278 DEBUG Processing 46/725 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,387 DEBUG Processing 207/666 atomic regions from SNP 61917 to 62517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,487 DEBUG Processing 47/725 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,628 DEBUG Processing 208/666 atomic regions from SNP 62217 to 62817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,707 DEBUG Processing 48/725 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,843 DEBUG Processing 209/666 atomic regions from SNP 62517 to 63117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,916 DEBUG Processing 49/725 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,078 DEBUG Processing 210/666 atomic regions from SNP 62817 to 63417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,130 DEBUG Processing 50/725 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,287 DEBUG Processing 211/666 atomic regions from SNP 63117 to 63717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,342 DEBUG Processing 51/725 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,486 DEBUG Processing 212/666 atomic regions from SNP 63417 to 64017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,544 DEBUG Processing 52/725 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,689 DEBUG Processing 213/666 atomic regions from SNP 63717 to 64317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,751 DEBUG Processing 53/725 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,897 DEBUG Processing 214/666 atomic regions from SNP 64017 to 64617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,963 DEBUG Processing 54/725 atomic regions from SNP 15953 to 16554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,108 DEBUG Processing 215/666 atomic regions from SNP 64317 to 64917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,175 DEBUG Processing 55/725 atomic regions from SNP 16254 to 16855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,320 DEBUG Processing 216/666 atomic regions from SNP 64617 to 65217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,384 DEBUG Processing 56/725 atomic regions from SNP 16555 to 17156 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,546 DEBUG Processing 217/666 atomic regions from SNP 64917 to 65517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,591 DEBUG Processing 57/725 atomic regions from SNP 16856 to 17457 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,748 DEBUG Processing 218/666 atomic regions from SNP 65217 to 65817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,797 DEBUG Processing 58/725 atomic regions from SNP 17157 to 17758 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,967 DEBUG Processing 219/666 atomic regions from SNP 65517 to 66117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,008 DEBUG Processing 59/725 atomic regions from SNP 17458 to 18059 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,191 DEBUG Processing 220/666 atomic regions from SNP 65817 to 66417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,219 DEBUG Processing 60/725 atomic regions from SNP 17759 to 18360 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,432 DEBUG Processing 221/666 atomic regions from SNP 66117 to 66717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,444 DEBUG Processing 61/725 atomic regions from SNP 18060 to 18661 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,660 DEBUG Processing 62/725 atomic regions from SNP 18361 to 18962 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,665 DEBUG Processing 222/666 atomic regions from SNP 66417 to 67017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,869 DEBUG Processing 223/666 atomic regions from SNP 66717 to 67317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,875 DEBUG Processing 63/725 atomic regions from SNP 18662 to 19263 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,072 DEBUG Processing 224/666 atomic regions from SNP 67017 to 67617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,098 DEBUG Processing 64/725 atomic regions from SNP 18963 to 19564 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,273 DEBUG Processing 225/666 atomic regions from SNP 67317 to 67917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,308 DEBUG Processing 65/725 atomic regions from SNP 19264 to 19865 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,475 DEBUG Processing 226/666 atomic regions from SNP 67617 to 68217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,514 DEBUG Processing 66/725 atomic regions from SNP 19565 to 20166 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,698 DEBUG Processing 227/666 atomic regions from SNP 67917 to 68517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,723 DEBUG Processing 67/725 atomic regions from SNP 19866 to 20467 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,914 DEBUG Processing 228/666 atomic regions from SNP 68217 to 68817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,945 DEBUG Processing 68/725 atomic regions from SNP 20167 to 20768 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,127 DEBUG Processing 229/666 atomic regions from SNP 68517 to 69117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,188 DEBUG Processing 69/725 atomic regions from SNP 20468 to 21069 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,291 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:52:38,330 DEBUG Processing 230/666 atomic regions from SNP 68817 to 69417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,402 DEBUG Processing 70/725 atomic regions from SNP 20769 to 21370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,422 DEBUG Subchromosome time: 209.83538668695837, subchromosome SNPs: 211831 2025-01-31 09:52:38,423 DEBUG Estimated BADs: [0.98, 7.87, 0.66, 3.94, 0.49, 1.97, 17.71, 0.66, 7.87, 0.98, 11.81, 0.98, 0.00, 0.66, 7.87, 0.98, 5.90, 0.66, 1.97, 0.98, 3.94, 15.74, 5.90, 0.66, 1.97, 0.98, 0.39, 1.97, 0.49, 1.97, 0.98, 1.97, 0.49, 1.97, 5.90, 1.97, 0.33, 1.97, 0.66, 5.90, 0.33, 1.97, 3.94, 0.98, 3.94, 1.97, 7.87, 1.97, 9.84, 3.94] SNP counts: [801, 2324, 891, 2521, 3223, 818, 269, 3281, 2256, 2529, 1572, 433, 17, 1502, 2989, 1849, 7008, 2075, 8477, 7125, 2398, 1669, 2837, 1783, 3019, 3565, 5422, 2091, 11230, 9187, 8305, 5196, 2392, 2634, 3086, 7489, 5084, 4496, 4003, 257, 4160, 5734, 8353, 9009, 3601, 26654, 5776, 22875, 1701, 6800] SNP IDs counts: [801, 2324, 891, 2521, 3223, 818, 269, 3281, 2256, 2529, 1572, 433, 17, 1502, 2989, 1849, 7008, 2075, 8477, 7125, 2398, 1669, 2837, 1783, 3019, 3565, 5422, 2091, 11230, 9187, 8305, 5196, 2392, 2634, 3086, 7489, 5084, 4496, 4003, 257, 4160, 5734, 8353, 9009, 3601, 26654, 5776, 22875, 1701, 6800] Critical gap: 667592bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 3.58Mbp, 5.11Mbp, 5.74Mbp, 7.30Mbp, 12.38Mbp, 12.92Mbp, 13.06Mbp, 15.89Mbp, 17.07Mbp, 19.00Mbp, 19.82Mbp, 20.07Mbp[0.71Mbp], 21.37Mbp[1.42Mbp], 24.29Mbp, 25.93Mbp, 27.16Mbp, 30.97Mbp, 33.67Mbp, 38.23Mbp, 43.52Mbp, 44.82Mbp, 45.68Mbp, 47.17Mbp, 48.34Mbp, 49.99Mbp, 52.14Mbp, 55.43Mbp, 56.68Mbp, 63.88Mbp, 68.87Mbp, 73.52Mbp, 76.44Mbp, 77.81Mbp, 79.24Mbp, 80.86Mbp, 84.95Mbp, 88.08Mbp, 90.64Mbp, 92.87Mbp, 93.02Mbp, 95.54Mbp, 98.66Mbp, 103.09Mbp, 109.08Mbp, 110.98Mbp, 125.39Mbp, 128.46Mbp, 140.80Mbp, 141.69Mbp, 145.44Mbp] 2025-01-31 09:52:38,423 DEBUG chr7 time: 209.83612037205603 s 2025-01-31 09:52:38,533 DEBUG Processing 231/666 atomic regions from SNP 69117 to 69717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,569 DEBUG chr7: Fitting background model for 49 segments 2025-01-31 09:52:38,613 DEBUG Processing 71/725 atomic regions from SNP 21070 to 21671 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,735 DEBUG Processing 232/666 atomic regions from SNP 69417 to 70017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,825 DEBUG Processing 72/725 atomic regions from SNP 21371 to 21972 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,946 DEBUG Processing 233/666 atomic regions from SNP 69717 to 70317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,038 DEBUG Processing 73/725 atomic regions from SNP 21672 to 22273 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,154 DEBUG Processing 234/666 atomic regions from SNP 70017 to 70617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,250 DEBUG Processing 74/725 atomic regions from SNP 21973 to 22574 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,358 DEBUG Processing 235/666 atomic regions from SNP 70317 to 70917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,464 DEBUG Processing 75/725 atomic regions from SNP 22274 to 22875 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,563 DEBUG Processing 236/666 atomic regions from SNP 70617 to 71217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,671 DEBUG Processing 76/725 atomic regions from SNP 22575 to 23176 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,767 DEBUG Processing 237/666 atomic regions from SNP 70917 to 71517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,882 DEBUG Processing 77/725 atomic regions from SNP 22876 to 23477 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,979 DEBUG Processing 238/666 atomic regions from SNP 71217 to 71817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,093 DEBUG Processing 78/725 atomic regions from SNP 23177 to 23778 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,194 DEBUG Processing 239/666 atomic regions from SNP 71517 to 72117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,309 DEBUG Processing 79/725 atomic regions from SNP 23478 to 24079 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,416 DEBUG Processing 240/666 atomic regions from SNP 71817 to 72417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,515 DEBUG Processing 80/725 atomic regions from SNP 23779 to 24380 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,662 DEBUG Processing 241/666 atomic regions from SNP 72117 to 72717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,727 DEBUG Processing 81/725 atomic regions from SNP 24080 to 24681 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,902 DEBUG Processing 242/666 atomic regions from SNP 72417 to 73017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,943 DEBUG Processing 82/725 atomic regions from SNP 24381 to 24982 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,123 DEBUG Processing 243/666 atomic regions from SNP 72717 to 73317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,156 DEBUG Processing 83/725 atomic regions from SNP 24682 to 25283 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,328 DEBUG Processing 244/666 atomic regions from SNP 73017 to 73617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,366 DEBUG Processing 84/725 atomic regions from SNP 24983 to 25584 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,535 DEBUG Processing 245/666 atomic regions from SNP 73317 to 73917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,580 DEBUG Processing 85/725 atomic regions from SNP 25284 to 25885 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,740 DEBUG Processing 246/666 atomic regions from SNP 73617 to 74217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,788 DEBUG Processing 86/725 atomic regions from SNP 25585 to 26186 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,970 DEBUG Processing 247/666 atomic regions from SNP 73917 to 74517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,997 DEBUG Processing 87/725 atomic regions from SNP 25886 to 26487 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,209 DEBUG Processing 248/666 atomic regions from SNP 74217 to 74817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,210 DEBUG Processing 88/725 atomic regions from SNP 26187 to 26788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,417 DEBUG Processing 89/725 atomic regions from SNP 26488 to 27089 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,444 DEBUG Processing 249/666 atomic regions from SNP 74517 to 75117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,624 DEBUG Processing 90/725 atomic regions from SNP 26789 to 27390 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,660 DEBUG Processing 250/666 atomic regions from SNP 74817 to 75417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,831 DEBUG Processing 91/725 atomic regions from SNP 27090 to 27691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,868 DEBUG Processing 251/666 atomic regions from SNP 75117 to 75717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,036 DEBUG Processing 92/725 atomic regions from SNP 27391 to 27992 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,073 DEBUG Processing 252/666 atomic regions from SNP 75417 to 76017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,244 DEBUG Processing 93/725 atomic regions from SNP 27692 to 28293 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,280 DEBUG Processing 253/666 atomic regions from SNP 75717 to 76317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,452 DEBUG Processing 94/725 atomic regions from SNP 27993 to 28594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,489 DEBUG Processing 254/666 atomic regions from SNP 76017 to 76617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,670 DEBUG Processing 95/725 atomic regions from SNP 28294 to 28895 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,697 DEBUG Processing 255/666 atomic regions from SNP 76317 to 76917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,876 DEBUG Processing 96/725 atomic regions from SNP 28595 to 29196 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,915 DEBUG Processing 256/666 atomic regions from SNP 76617 to 77217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,084 DEBUG Processing 97/725 atomic regions from SNP 28896 to 29497 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,149 DEBUG Processing 257/666 atomic regions from SNP 76917 to 77517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,287 DEBUG Processing 98/725 atomic regions from SNP 29197 to 29798 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,391 DEBUG Processing 258/666 atomic regions from SNP 77217 to 77817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,501 DEBUG Processing 99/725 atomic regions from SNP 29498 to 30099 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,629 DEBUG Processing 259/666 atomic regions from SNP 77517 to 78117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,732 DEBUG Processing 100/725 atomic regions from SNP 29799 to 30400 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,862 DEBUG Processing 260/666 atomic regions from SNP 77817 to 78417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,969 DEBUG Processing 101/725 atomic regions from SNP 30100 to 30701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,097 DEBUG Processing 261/666 atomic regions from SNP 78117 to 78717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,207 DEBUG Processing 102/725 atomic regions from SNP 30401 to 31002 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,330 DEBUG Processing 262/666 atomic regions from SNP 78417 to 79017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,454 DEBUG Processing 103/725 atomic regions from SNP 30702 to 31303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,536 DEBUG Processing 263/666 atomic regions from SNP 78717 to 79317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,693 DEBUG Processing 104/725 atomic regions from SNP 31003 to 31604 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,767 DEBUG Processing 264/666 atomic regions from SNP 79017 to 79617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,933 DEBUG Processing 105/725 atomic regions from SNP 31304 to 31905 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,005 DEBUG Processing 265/666 atomic regions from SNP 79317 to 79917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,169 DEBUG Processing 106/725 atomic regions from SNP 31605 to 32206 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,246 DEBUG Processing 266/666 atomic regions from SNP 79617 to 80217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,410 DEBUG Processing 107/725 atomic regions from SNP 31906 to 32507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,463 DEBUG Processing 267/666 atomic regions from SNP 79917 to 80517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,649 DEBUG Processing 108/725 atomic regions from SNP 32207 to 32807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,666 DEBUG Processing 268/666 atomic regions from SNP 80217 to 80817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,866 DEBUG Processing 269/666 atomic regions from SNP 80517 to 81117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,887 DEBUG Processing 109/725 atomic regions from SNP 32507 to 33107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,073 DEBUG Processing 270/666 atomic regions from SNP 80817 to 81417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,116 DEBUG Processing 110/725 atomic regions from SNP 32807 to 33407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,284 DEBUG Processing 271/666 atomic regions from SNP 81117 to 81717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,349 DEBUG Processing 111/725 atomic regions from SNP 33107 to 33707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,506 DEBUG Processing 272/666 atomic regions from SNP 81417 to 82017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,561 DEBUG Processing 112/725 atomic regions from SNP 33407 to 34007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,717 DEBUG Processing 273/666 atomic regions from SNP 81717 to 82317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,769 DEBUG Processing 113/725 atomic regions from SNP 33707 to 34307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,920 DEBUG Processing 274/666 atomic regions from SNP 82017 to 82617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,977 DEBUG Processing 114/725 atomic regions from SNP 34007 to 34607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,139 DEBUG Processing 275/666 atomic regions from SNP 82317 to 82917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,195 DEBUG Processing 115/725 atomic regions from SNP 34307 to 34907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,351 DEBUG Processing 276/666 atomic regions from SNP 82617 to 83217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,403 DEBUG Processing 116/725 atomic regions from SNP 34607 to 35207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,571 DEBUG Processing 277/666 atomic regions from SNP 82917 to 83517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,613 DEBUG Processing 117/725 atomic regions from SNP 34907 to 35507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,797 DEBUG Processing 278/666 atomic regions from SNP 83217 to 83817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,826 DEBUG Processing 118/725 atomic regions from SNP 35207 to 35807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,033 DEBUG Processing 279/666 atomic regions from SNP 83517 to 84117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,041 DEBUG Processing 119/725 atomic regions from SNP 35507 to 36107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,247 DEBUG Processing 280/666 atomic regions from SNP 83817 to 84417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,252 DEBUG Processing 120/725 atomic regions from SNP 35807 to 36407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,453 DEBUG Processing 281/666 atomic regions from SNP 84117 to 84717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,463 DEBUG Processing 121/725 atomic regions from SNP 36107 to 36707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,657 DEBUG Processing 282/666 atomic regions from SNP 84417 to 85017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,673 DEBUG Processing 122/725 atomic regions from SNP 36407 to 37007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,862 DEBUG Processing 283/666 atomic regions from SNP 84717 to 85317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,884 DEBUG Processing 123/725 atomic regions from SNP 36707 to 37307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,074 DEBUG Processing 284/666 atomic regions from SNP 85017 to 85617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,095 DEBUG Processing 124/725 atomic regions from SNP 37007 to 37607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,278 DEBUG Processing 285/666 atomic regions from SNP 85317 to 85917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,302 DEBUG Processing 125/725 atomic regions from SNP 37307 to 37907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,477 DEBUG Processing 286/666 atomic regions from SNP 85617 to 86217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,507 DEBUG Processing 126/725 atomic regions from SNP 37607 to 38207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,677 DEBUG Processing 287/666 atomic regions from SNP 85917 to 86517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,718 DEBUG Processing 127/725 atomic regions from SNP 37907 to 38507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,876 DEBUG Processing 288/666 atomic regions from SNP 86217 to 86817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,923 DEBUG Processing 128/725 atomic regions from SNP 38207 to 38807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,076 DEBUG Processing 289/666 atomic regions from SNP 86517 to 87117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,126 DEBUG Processing 129/725 atomic regions from SNP 38507 to 39107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,279 DEBUG Processing 290/666 atomic regions from SNP 86817 to 87417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,330 DEBUG Processing 130/725 atomic regions from SNP 38807 to 39407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,484 DEBUG Processing 291/666 atomic regions from SNP 87117 to 87717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,537 DEBUG Processing 131/725 atomic regions from SNP 39107 to 39707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,693 DEBUG Processing 292/666 atomic regions from SNP 87417 to 88017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,750 DEBUG Processing 132/725 atomic regions from SNP 39407 to 40007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,911 DEBUG Processing 293/666 atomic regions from SNP 87717 to 88317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,963 DEBUG Processing 133/725 atomic regions from SNP 39707 to 40307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,132 DEBUG Processing 294/666 atomic regions from SNP 88017 to 88617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,177 DEBUG Processing 134/725 atomic regions from SNP 40007 to 40607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,340 DEBUG Processing 295/666 atomic regions from SNP 88317 to 88917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,387 DEBUG Processing 135/725 atomic regions from SNP 40307 to 40907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,542 DEBUG Processing 296/666 atomic regions from SNP 88617 to 89217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,592 DEBUG Processing 136/725 atomic regions from SNP 40607 to 41207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,743 DEBUG Processing 297/666 atomic regions from SNP 88917 to 89517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,800 DEBUG Processing 137/725 atomic regions from SNP 40907 to 41507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,947 DEBUG Processing 298/666 atomic regions from SNP 89217 to 89817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,018 DEBUG Processing 138/725 atomic regions from SNP 41207 to 41807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,152 DEBUG Processing 299/666 atomic regions from SNP 89517 to 90117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,238 DEBUG Processing 139/725 atomic regions from SNP 41507 to 42107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,353 DEBUG Processing 300/666 atomic regions from SNP 89817 to 90417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,449 DEBUG Processing 140/725 atomic regions from SNP 41807 to 42407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,570 DEBUG Processing 301/666 atomic regions from SNP 90117 to 90717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,661 DEBUG Processing 141/725 atomic regions from SNP 42107 to 42707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,805 DEBUG Processing 302/666 atomic regions from SNP 90417 to 91017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,875 DEBUG Processing 142/725 atomic regions from SNP 42407 to 43007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,013 DEBUG Processing 303/666 atomic regions from SNP 90717 to 91317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,091 DEBUG Processing 143/725 atomic regions from SNP 42707 to 43307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,220 DEBUG Processing 304/666 atomic regions from SNP 91017 to 91617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,309 DEBUG Processing 144/725 atomic regions from SNP 43007 to 43607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,426 DEBUG Processing 305/666 atomic regions from SNP 91317 to 91917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,527 DEBUG Processing 145/725 atomic regions from SNP 43307 to 43907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,630 DEBUG Processing 306/666 atomic regions from SNP 91617 to 92217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,745 DEBUG Processing 146/725 atomic regions from SNP 43607 to 44207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,831 DEBUG Processing 307/666 atomic regions from SNP 91917 to 92517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,954 DEBUG Processing 147/725 atomic regions from SNP 43907 to 44507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,046 DEBUG Processing 308/666 atomic regions from SNP 92217 to 92817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,152 DEBUG Processing 148/725 atomic regions from SNP 44207 to 44807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,273 DEBUG Processing 309/666 atomic regions from SNP 92517 to 93117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,351 DEBUG Processing 149/725 atomic regions from SNP 44507 to 45107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,487 DEBUG Processing 310/666 atomic regions from SNP 92817 to 93417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,551 DEBUG Processing 150/725 atomic regions from SNP 44807 to 45407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,709 DEBUG Processing 311/666 atomic regions from SNP 93117 to 93717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,753 DEBUG Processing 151/725 atomic regions from SNP 45107 to 45707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,927 DEBUG Processing 312/666 atomic regions from SNP 93417 to 94017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,966 DEBUG Processing 152/725 atomic regions from SNP 45407 to 46007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,136 DEBUG Processing 313/666 atomic regions from SNP 93717 to 94317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,178 DEBUG Processing 153/725 atomic regions from SNP 45707 to 46307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,339 DEBUG Processing 314/666 atomic regions from SNP 94017 to 94617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,388 DEBUG Processing 154/725 atomic regions from SNP 46007 to 46607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,542 DEBUG Processing 315/666 atomic regions from SNP 94317 to 94917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,599 DEBUG Processing 155/725 atomic regions from SNP 46307 to 46907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,755 DEBUG Processing 316/666 atomic regions from SNP 94617 to 95217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,812 DEBUG Processing 156/725 atomic regions from SNP 46607 to 47207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,973 DEBUG Processing 317/666 atomic regions from SNP 94917 to 95517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,027 DEBUG Processing 157/725 atomic regions from SNP 46907 to 47507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,177 DEBUG Processing 318/666 atomic regions from SNP 95217 to 95817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,235 DEBUG Processing 158/725 atomic regions from SNP 47207 to 47807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,386 DEBUG Processing 319/666 atomic regions from SNP 95517 to 96117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,447 DEBUG Processing 159/725 atomic regions from SNP 47507 to 48107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,593 DEBUG Processing 320/666 atomic regions from SNP 95817 to 96417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,648 DEBUG Processing 160/725 atomic regions from SNP 47807 to 48407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,801 DEBUG Processing 321/666 atomic regions from SNP 96117 to 96717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,855 DEBUG Processing 161/725 atomic regions from SNP 48107 to 48707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,010 DEBUG Processing 322/666 atomic regions from SNP 96417 to 97017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,066 DEBUG Processing 162/725 atomic regions from SNP 48407 to 49007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,238 DEBUG Processing 323/666 atomic regions from SNP 96717 to 97317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,296 DEBUG Processing 163/725 atomic regions from SNP 48707 to 49307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,466 DEBUG Processing 324/666 atomic regions from SNP 97017 to 97617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,533 DEBUG Processing 164/725 atomic regions from SNP 49007 to 49607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,701 DEBUG Processing 325/666 atomic regions from SNP 97317 to 97917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,752 DEBUG Processing 165/725 atomic regions from SNP 49307 to 49907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,919 DEBUG Processing 326/666 atomic regions from SNP 97617 to 98217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,963 DEBUG Processing 166/725 atomic regions from SNP 49607 to 50207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,134 DEBUG Processing 327/666 atomic regions from SNP 97917 to 98517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,172 DEBUG Processing 167/725 atomic regions from SNP 49907 to 50507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,365 DEBUG Processing 328/666 atomic regions from SNP 98217 to 98817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,383 DEBUG Processing 168/725 atomic regions from SNP 50207 to 50807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,582 DEBUG Processing 329/666 atomic regions from SNP 98517 to 99117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,594 DEBUG Processing 169/725 atomic regions from SNP 50507 to 51107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,796 DEBUG Processing 330/666 atomic regions from SNP 98817 to 99417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,808 DEBUG Processing 170/725 atomic regions from SNP 50807 to 51407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,009 DEBUG Processing 331/666 atomic regions from SNP 99117 to 99717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,022 DEBUG Processing 171/725 atomic regions from SNP 51107 to 51707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,223 DEBUG Processing 332/666 atomic regions from SNP 99417 to 100017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,238 DEBUG Processing 172/725 atomic regions from SNP 51407 to 52007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,432 DEBUG Processing 333/666 atomic regions from SNP 99717 to 100317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,448 DEBUG Processing 173/725 atomic regions from SNP 51707 to 52307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,640 DEBUG Processing 334/666 atomic regions from SNP 100017 to 100617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,660 DEBUG Processing 174/725 atomic regions from SNP 52007 to 52607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,874 DEBUG Processing 175/725 atomic regions from SNP 52307 to 52907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,882 DEBUG Processing 335/666 atomic regions from SNP 100317 to 100917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,097 DEBUG Processing 176/725 atomic regions from SNP 52607 to 53207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,122 DEBUG Processing 336/666 atomic regions from SNP 100617 to 101217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,316 DEBUG Processing 177/725 atomic regions from SNP 52907 to 53507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,333 DEBUG Processing 337/666 atomic regions from SNP 100917 to 101517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,536 DEBUG Processing 178/725 atomic regions from SNP 53207 to 53807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,546 DEBUG Processing 338/666 atomic regions from SNP 101217 to 101817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,754 DEBUG Processing 179/725 atomic regions from SNP 53507 to 54107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,758 DEBUG Processing 339/666 atomic regions from SNP 101517 to 102117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,860 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:53:01,862 DEBUG chr11: Signal quantile: 0.984. signal threshold: 15. Best RMSEA: 0.010 2025-01-31 09:53:01,976 DEBUG Processing 180/725 atomic regions from SNP 53807 to 54407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,976 DEBUG Processing 340/666 atomic regions from SNP 101817 to 102417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,189 DEBUG Processing 341/666 atomic regions from SNP 102117 to 102717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,193 DEBUG Processing 181/725 atomic regions from SNP 54107 to 54707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,412 DEBUG Processing 342/666 atomic regions from SNP 102417 to 103017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,415 DEBUG Processing 182/725 atomic regions from SNP 54407 to 55007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,627 DEBUG Processing 343/666 atomic regions from SNP 102717 to 103317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,637 DEBUG Processing 183/725 atomic regions from SNP 54707 to 55307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,842 DEBUG Processing 344/666 atomic regions from SNP 103017 to 103617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,857 DEBUG Processing 184/725 atomic regions from SNP 55007 to 55607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,059 DEBUG Processing 345/666 atomic regions from SNP 103317 to 103917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,077 DEBUG Processing 185/725 atomic regions from SNP 55307 to 55907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,273 DEBUG Processing 346/666 atomic regions from SNP 103617 to 104217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,298 DEBUG Processing 186/725 atomic regions from SNP 55607 to 56207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,485 DEBUG Processing 347/666 atomic regions from SNP 103917 to 104517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,524 DEBUG Processing 187/725 atomic regions from SNP 55907 to 56507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,693 DEBUG Processing 348/666 atomic regions from SNP 104217 to 104817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,754 DEBUG Processing 188/725 atomic regions from SNP 56207 to 56807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,917 DEBUG Processing 349/666 atomic regions from SNP 104517 to 105117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,970 DEBUG Processing 189/725 atomic regions from SNP 56507 to 57107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,020 DEBUG chr11 total SNP count: 212758 2025-01-31 09:53:04,020 DEBUG chr11 length: 122082543 2025-01-31 09:53:04,020 DEBUG ----------------------------------------- 2025-01-31 09:53:04,020 INFO Processing SNPs in chr11 2025-01-31 09:53:04,142 DEBUG Processing 350/666 atomic regions from SNP 104817 to 105417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,187 DEBUG Processing 190/725 atomic regions from SNP 56807 to 57407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,241 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 212758)] 2025-01-31 09:53:04,346 DEBUG Processing 351/666 atomic regions from SNP 105117 to 105717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,384 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:04,398 DEBUG Processing 191/725 atomic regions from SNP 57107 to 57707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,560 DEBUG Processing 352/666 atomic regions from SNP 105417 to 106017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,606 DEBUG Processing 192/725 atomic regions from SNP 57407 to 58007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,761 DEBUG Processing 353/666 atomic regions from SNP 105717 to 106317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,814 DEBUG Processing 193/725 atomic regions from SNP 57707 to 58307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,994 DEBUG Processing 354/666 atomic regions from SNP 106017 to 106617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,023 DEBUG Processing 194/725 atomic regions from SNP 58007 to 58607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,223 DEBUG Processing 355/666 atomic regions from SNP 106317 to 106917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,224 DEBUG Processing 195/725 atomic regions from SNP 58307 to 58907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,425 DEBUG Processing 196/725 atomic regions from SNP 58607 to 59207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,437 DEBUG Processing 356/666 atomic regions from SNP 106617 to 107217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,625 DEBUG Processing 197/725 atomic regions from SNP 58907 to 59507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,636 DEBUG Processing 357/666 atomic regions from SNP 106917 to 107517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,829 DEBUG Processing 198/725 atomic regions from SNP 59207 to 59807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,839 DEBUG Processing 358/666 atomic regions from SNP 107217 to 107817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,036 DEBUG Processing 199/725 atomic regions from SNP 59507 to 60107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,042 DEBUG Processing 359/666 atomic regions from SNP 107517 to 108117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,250 DEBUG Processing 200/725 atomic regions from SNP 59807 to 60407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,255 DEBUG Processing 360/666 atomic regions from SNP 107817 to 108417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,466 DEBUG Processing 201/725 atomic regions from SNP 60107 to 60707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,469 DEBUG Processing 361/666 atomic regions from SNP 108117 to 108717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,673 DEBUG Processing 362/666 atomic regions from SNP 108417 to 109017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,677 DEBUG Processing 202/725 atomic regions from SNP 60407 to 61007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,879 DEBUG Processing 363/666 atomic regions from SNP 108717 to 109317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,883 DEBUG Processing 203/725 atomic regions from SNP 60707 to 61307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,085 DEBUG Processing 364/666 atomic regions from SNP 109017 to 109617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,092 DEBUG Processing 204/725 atomic regions from SNP 61007 to 61607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,284 DEBUG Processing 365/666 atomic regions from SNP 109317 to 109917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,297 DEBUG Processing 205/725 atomic regions from SNP 61307 to 61907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,494 DEBUG Processing 366/666 atomic regions from SNP 109617 to 110217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,502 DEBUG Processing 206/725 atomic regions from SNP 61607 to 62207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,699 DEBUG Processing 367/666 atomic regions from SNP 109917 to 110517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,713 DEBUG Processing 207/725 atomic regions from SNP 61907 to 62507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,902 DEBUG Processing 368/666 atomic regions from SNP 110217 to 110817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,923 DEBUG Processing 208/725 atomic regions from SNP 62207 to 62807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,108 DEBUG Processing 369/666 atomic regions from SNP 110517 to 111117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,131 DEBUG Processing 209/725 atomic regions from SNP 62507 to 63107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,315 DEBUG Processing 370/666 atomic regions from SNP 110817 to 111417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,343 DEBUG Processing 210/725 atomic regions from SNP 62807 to 63407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,540 DEBUG Processing 371/666 atomic regions from SNP 111117 to 111717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,557 DEBUG Processing 211/725 atomic regions from SNP 63107 to 63707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,762 DEBUG Processing 372/666 atomic regions from SNP 111417 to 112017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,766 DEBUG Processing 212/725 atomic regions from SNP 63407 to 64007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,966 DEBUG Processing 373/666 atomic regions from SNP 111717 to 112317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,974 DEBUG Processing 213/725 atomic regions from SNP 63707 to 64307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,007 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:53:09,175 DEBUG Processing 374/666 atomic regions from SNP 112017 to 112617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,186 DEBUG Processing 214/725 atomic regions from SNP 64007 to 64607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,386 DEBUG Processing 375/666 atomic regions from SNP 112317 to 112917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,401 DEBUG Processing 215/725 atomic regions from SNP 64307 to 64907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,595 DEBUG Processing 376/666 atomic regions from SNP 112617 to 113217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,616 DEBUG Processing 216/725 atomic regions from SNP 64607 to 65207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,803 DEBUG Processing 377/666 atomic regions from SNP 112917 to 113517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,829 DEBUG Processing 217/725 atomic regions from SNP 64907 to 65507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,010 DEBUG Processing 378/666 atomic regions from SNP 113217 to 113817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,044 DEBUG Processing 218/725 atomic regions from SNP 65207 to 65807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,232 DEBUG Processing 379/666 atomic regions from SNP 113517 to 114117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,257 DEBUG Processing 219/725 atomic regions from SNP 65507 to 66107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,437 DEBUG Processing 380/666 atomic regions from SNP 113817 to 114417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,494 DEBUG Processing 220/725 atomic regions from SNP 65807 to 66407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,642 DEBUG Processing 381/666 atomic regions from SNP 114117 to 114717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,718 DEBUG Processing 221/725 atomic regions from SNP 66107 to 66707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,863 DEBUG Processing 382/666 atomic regions from SNP 114417 to 115017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,929 DEBUG Processing 222/725 atomic regions from SNP 66407 to 67007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,070 DEBUG Processing 383/666 atomic regions from SNP 114717 to 115317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,137 DEBUG Processing 223/725 atomic regions from SNP 66707 to 67307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,272 DEBUG Processing 384/666 atomic regions from SNP 115017 to 115617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,348 DEBUG Processing 224/725 atomic regions from SNP 67007 to 67607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,475 DEBUG Processing 385/666 atomic regions from SNP 115317 to 115917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,559 DEBUG Processing 225/725 atomic regions from SNP 67307 to 67907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,714 DEBUG Processing 386/666 atomic regions from SNP 115617 to 116217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,770 DEBUG Processing 226/725 atomic regions from SNP 67607 to 68207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,935 DEBUG Processing 387/666 atomic regions from SNP 115917 to 116517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,981 DEBUG Processing 227/725 atomic regions from SNP 67907 to 68507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,166 DEBUG Processing 388/666 atomic regions from SNP 116217 to 116817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,196 DEBUG Processing 228/725 atomic regions from SNP 68207 to 68807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,388 DEBUG Processing 389/666 atomic regions from SNP 116517 to 117117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,408 DEBUG Processing 229/725 atomic regions from SNP 68507 to 69107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,609 DEBUG Processing 390/666 atomic regions from SNP 116817 to 117417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,622 DEBUG Processing 230/725 atomic regions from SNP 68807 to 69407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,871 DEBUG Processing 231/725 atomic regions from SNP 69107 to 69707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,873 DEBUG Processing 391/666 atomic regions from SNP 117117 to 117717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,085 DEBUG Processing 392/666 atomic regions from SNP 117417 to 118017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,085 DEBUG Processing 232/725 atomic regions from SNP 69407 to 70007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,293 DEBUG Processing 393/666 atomic regions from SNP 117717 to 118317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,298 DEBUG Processing 233/725 atomic regions from SNP 69707 to 70307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,501 DEBUG Processing 394/666 atomic regions from SNP 118017 to 118617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,511 DEBUG Processing 234/725 atomic regions from SNP 70007 to 70607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,705 DEBUG Processing 395/666 atomic regions from SNP 118317 to 118917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,743 DEBUG Processing 235/725 atomic regions from SNP 70307 to 70907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,911 DEBUG Processing 396/666 atomic regions from SNP 118617 to 119217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,992 DEBUG Processing 236/725 atomic regions from SNP 70607 to 71207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,124 DEBUG Processing 397/666 atomic regions from SNP 118917 to 119517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,218 DEBUG Processing 237/725 atomic regions from SNP 70907 to 71507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,338 DEBUG Processing 398/666 atomic regions from SNP 119217 to 119817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,442 DEBUG Processing 238/725 atomic regions from SNP 71207 to 71807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,543 DEBUG Processing 399/666 atomic regions from SNP 119517 to 120117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,653 DEBUG Processing 239/725 atomic regions from SNP 71507 to 72107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,743 DEBUG Processing 400/666 atomic regions from SNP 119817 to 120417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,871 DEBUG Processing 240/725 atomic regions from SNP 71807 to 72407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,946 DEBUG Processing 401/666 atomic regions from SNP 120117 to 120717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,103 DEBUG Processing 241/725 atomic regions from SNP 72107 to 72707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,146 DEBUG Processing 402/666 atomic regions from SNP 120417 to 121017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,352 DEBUG Processing 242/725 atomic regions from SNP 72407 to 73007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,363 DEBUG Processing 403/666 atomic regions from SNP 120717 to 121317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,680 DEBUG Processing 404/666 atomic regions from SNP 121017 to 121617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,701 DEBUG Processing 243/725 atomic regions from SNP 72707 to 73307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,900 DEBUG Processing 405/666 atomic regions from SNP 121317 to 121917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,950 DEBUG Processing 244/725 atomic regions from SNP 73007 to 73607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,111 DEBUG Processing 406/666 atomic regions from SNP 121617 to 122217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,186 DEBUG Processing 245/725 atomic regions from SNP 73307 to 73907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,319 DEBUG Processing 407/666 atomic regions from SNP 121917 to 122517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,424 DEBUG Processing 246/725 atomic regions from SNP 73607 to 74207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,537 DEBUG Processing 408/666 atomic regions from SNP 122217 to 122817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,638 DEBUG Processing 247/725 atomic regions from SNP 73907 to 74507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,766 DEBUG Processing 409/666 atomic regions from SNP 122517 to 123117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,847 DEBUG Processing 248/725 atomic regions from SNP 74207 to 74807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,976 DEBUG Processing 410/666 atomic regions from SNP 122817 to 123417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,051 DEBUG Processing 249/725 atomic regions from SNP 74507 to 75107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,184 DEBUG Processing 411/666 atomic regions from SNP 123117 to 123717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,260 DEBUG Processing 250/725 atomic regions from SNP 74807 to 75407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,399 DEBUG Processing 412/666 atomic regions from SNP 123417 to 124017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,475 DEBUG Processing 251/725 atomic regions from SNP 75107 to 75707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,618 DEBUG Processing 413/666 atomic regions from SNP 123717 to 124317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,712 DEBUG Processing 252/725 atomic regions from SNP 75407 to 76007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,827 DEBUG Processing 414/666 atomic regions from SNP 124017 to 124617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,951 DEBUG Processing 253/725 atomic regions from SNP 75707 to 76307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,052 DEBUG Processing 415/666 atomic regions from SNP 124317 to 124917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,186 DEBUG Processing 254/725 atomic regions from SNP 76007 to 76607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,264 DEBUG Processing 416/666 atomic regions from SNP 124617 to 125217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,402 DEBUG Processing 255/725 atomic regions from SNP 76307 to 76907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,485 DEBUG Processing 417/666 atomic regions from SNP 124917 to 125517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,611 DEBUG Processing 256/725 atomic regions from SNP 76607 to 77207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,689 DEBUG Processing 418/666 atomic regions from SNP 125217 to 125817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,812 DEBUG Processing 257/725 atomic regions from SNP 76907 to 77507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,895 DEBUG Processing 419/666 atomic regions from SNP 125517 to 126117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,014 DEBUG Processing 258/725 atomic regions from SNP 77207 to 77807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,100 DEBUG Processing 420/666 atomic regions from SNP 125817 to 126417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,214 DEBUG Processing 259/725 atomic regions from SNP 77507 to 78107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,302 DEBUG Processing 421/666 atomic regions from SNP 126117 to 126717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,418 DEBUG Processing 260/725 atomic regions from SNP 77807 to 78407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,503 DEBUG Processing 422/666 atomic regions from SNP 126417 to 127017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,620 DEBUG Processing 261/725 atomic regions from SNP 78107 to 78707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,702 DEBUG Processing 423/666 atomic regions from SNP 126717 to 127317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,822 DEBUG Processing 262/725 atomic regions from SNP 78407 to 79007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,902 DEBUG Processing 424/666 atomic regions from SNP 127017 to 127617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,027 DEBUG Processing 263/725 atomic regions from SNP 78707 to 79307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,106 DEBUG Processing 425/666 atomic regions from SNP 127317 to 127917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,234 DEBUG Processing 264/725 atomic regions from SNP 79007 to 79607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,310 DEBUG Processing 426/666 atomic regions from SNP 127617 to 128217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,441 DEBUG Processing 265/725 atomic regions from SNP 79307 to 79907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,518 DEBUG Processing 427/666 atomic regions from SNP 127917 to 128517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,646 DEBUG Processing 266/725 atomic regions from SNP 79607 to 80207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,722 DEBUG Processing 428/666 atomic regions from SNP 128217 to 128817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,852 DEBUG Processing 267/725 atomic regions from SNP 79907 to 80507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,932 DEBUG Processing 429/666 atomic regions from SNP 128517 to 129117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,066 DEBUG Processing 268/725 atomic regions from SNP 80207 to 80807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,139 DEBUG Processing 430/666 atomic regions from SNP 128817 to 129417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,287 DEBUG Processing 269/725 atomic regions from SNP 80507 to 81107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,347 DEBUG Processing 431/666 atomic regions from SNP 129117 to 129717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,490 DEBUG Processing 270/725 atomic regions from SNP 80807 to 81407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,548 DEBUG Processing 432/666 atomic regions from SNP 129417 to 130017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,689 DEBUG Processing 271/725 atomic regions from SNP 81107 to 81707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,750 DEBUG Processing 433/666 atomic regions from SNP 129717 to 130317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,888 DEBUG Processing 272/725 atomic regions from SNP 81407 to 82007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,957 DEBUG Processing 434/666 atomic regions from SNP 130017 to 130617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,088 DEBUG Processing 273/725 atomic regions from SNP 81707 to 82307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,164 DEBUG Processing 435/666 atomic regions from SNP 130317 to 130917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,294 DEBUG Processing 274/725 atomic regions from SNP 82007 to 82607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,375 DEBUG Processing 436/666 atomic regions from SNP 130617 to 131217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,499 DEBUG Processing 275/725 atomic regions from SNP 82307 to 82907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,588 DEBUG Processing 437/666 atomic regions from SNP 130917 to 131517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,709 DEBUG Processing 276/725 atomic regions from SNP 82607 to 83207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,800 DEBUG Processing 438/666 atomic regions from SNP 131217 to 131817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,915 DEBUG Processing 277/725 atomic regions from SNP 82907 to 83507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,005 DEBUG Processing 439/666 atomic regions from SNP 131517 to 132117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,117 DEBUG Processing 278/725 atomic regions from SNP 83207 to 83807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,202 DEBUG Processing 440/666 atomic regions from SNP 131817 to 132417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,322 DEBUG Processing 279/725 atomic regions from SNP 83507 to 84107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,403 DEBUG Processing 441/666 atomic regions from SNP 132117 to 132717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,532 DEBUG Processing 280/725 atomic regions from SNP 83807 to 84407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,606 DEBUG Processing 442/666 atomic regions from SNP 132417 to 133017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,739 DEBUG Processing 281/725 atomic regions from SNP 84107 to 84707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,809 DEBUG Processing 443/666 atomic regions from SNP 132717 to 133317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,957 DEBUG Processing 282/725 atomic regions from SNP 84407 to 85007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,013 DEBUG Processing 444/666 atomic regions from SNP 133017 to 133617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,188 DEBUG Processing 283/725 atomic regions from SNP 84707 to 85307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,220 DEBUG Processing 445/666 atomic regions from SNP 133317 to 133917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,420 DEBUG Processing 284/725 atomic regions from SNP 85007 to 85607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,428 DEBUG Processing 446/666 atomic regions from SNP 133617 to 134217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,639 DEBUG Processing 285/725 atomic regions from SNP 85307 to 85907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,640 DEBUG Processing 447/666 atomic regions from SNP 133917 to 134517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,854 DEBUG Processing 448/666 atomic regions from SNP 134217 to 134817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,856 DEBUG Processing 286/725 atomic regions from SNP 85607 to 86207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,065 DEBUG Processing 287/725 atomic regions from SNP 85907 to 86507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,072 DEBUG Processing 449/666 atomic regions from SNP 134517 to 135117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,274 DEBUG Processing 288/725 atomic regions from SNP 86207 to 86807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,278 DEBUG Processing 450/666 atomic regions from SNP 134817 to 135417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,482 DEBUG Processing 289/725 atomic regions from SNP 86507 to 87107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,483 DEBUG Processing 451/666 atomic regions from SNP 135117 to 135717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,581 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:53:25,582 DEBUG chr13: Signal quantile: 0.989. signal threshold: 15. Best RMSEA: 0.012 2025-01-31 09:53:25,694 DEBUG Processing 290/725 atomic regions from SNP 86807 to 87407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,697 DEBUG Processing 452/666 atomic regions from SNP 135417 to 136017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,902 DEBUG Processing 453/666 atomic regions from SNP 135717 to 136317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,902 DEBUG Processing 291/725 atomic regions from SNP 87107 to 87707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,106 DEBUG Processing 454/666 atomic regions from SNP 136017 to 136617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,110 DEBUG Processing 292/725 atomic regions from SNP 87407 to 88007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,309 DEBUG Processing 455/666 atomic regions from SNP 136317 to 136917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,317 DEBUG Processing 293/725 atomic regions from SNP 87707 to 88307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,513 DEBUG Processing 456/666 atomic regions from SNP 136617 to 137217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,524 DEBUG Processing 294/725 atomic regions from SNP 88007 to 88607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,720 DEBUG Processing 457/666 atomic regions from SNP 136917 to 137517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,733 DEBUG Processing 295/725 atomic regions from SNP 88307 to 88907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,928 DEBUG Processing 458/666 atomic regions from SNP 137217 to 137817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,947 DEBUG Processing 296/725 atomic regions from SNP 88607 to 89207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,127 DEBUG Processing 459/666 atomic regions from SNP 137517 to 138117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,149 DEBUG Processing 297/725 atomic regions from SNP 88907 to 89507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,327 DEBUG Processing 460/666 atomic regions from SNP 137817 to 138417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,356 DEBUG Processing 298/725 atomic regions from SNP 89207 to 89807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,527 DEBUG Processing 461/666 atomic regions from SNP 138117 to 138717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,564 DEBUG Processing 299/725 atomic regions from SNP 89507 to 90107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,621 DEBUG chr13 total SNP count: 203579 2025-01-31 09:53:27,621 DEBUG chr13 length: 120421639 2025-01-31 09:53:27,621 DEBUG ----------------------------------------- 2025-01-31 09:53:27,621 INFO Processing SNPs in chr13 2025-01-31 09:53:27,730 DEBUG Processing 462/666 atomic regions from SNP 138417 to 139017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,775 DEBUG Processing 300/725 atomic regions from SNP 89807 to 90407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,821 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 203579)] 2025-01-31 09:53:27,930 DEBUG Processing 463/666 atomic regions from SNP 138717 to 139317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,960 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:27,980 DEBUG Processing 301/725 atomic regions from SNP 90107 to 90707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,133 DEBUG Processing 464/666 atomic regions from SNP 139017 to 139617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,185 DEBUG Processing 302/725 atomic regions from SNP 90407 to 91007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,332 DEBUG Processing 465/666 atomic regions from SNP 139317 to 139917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,390 DEBUG Processing 303/725 atomic regions from SNP 90707 to 91307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,541 DEBUG Processing 466/666 atomic regions from SNP 139617 to 140217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,601 DEBUG Processing 304/725 atomic regions from SNP 91007 to 91607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,742 DEBUG Processing 467/666 atomic regions from SNP 139917 to 140517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,815 DEBUG Processing 305/725 atomic regions from SNP 91307 to 91907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,941 DEBUG Processing 468/666 atomic regions from SNP 140217 to 140817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,045 DEBUG Processing 306/725 atomic regions from SNP 91607 to 92207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,146 DEBUG Processing 469/666 atomic regions from SNP 140517 to 141117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,149 DEBUG Segmenting atomic regions: 2025-01-31 09:53:29,242 DEBUG Processing 1/708 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,277 DEBUG Processing 307/725 atomic regions from SNP 91907 to 92507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,352 DEBUG Processing 470/666 atomic regions from SNP 140817 to 141417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,478 DEBUG Processing 2/708 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,492 DEBUG Processing 308/725 atomic regions from SNP 92207 to 92807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,553 DEBUG Processing 471/666 atomic regions from SNP 141117 to 141717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,696 DEBUG Processing 3/708 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,704 DEBUG Processing 309/725 atomic regions from SNP 92507 to 93107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,758 DEBUG Processing 472/666 atomic regions from SNP 141417 to 142017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,906 DEBUG Processing 4/708 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,916 DEBUG Processing 310/725 atomic regions from SNP 92807 to 93407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,965 DEBUG Processing 473/666 atomic regions from SNP 141717 to 142317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,126 DEBUG Processing 311/725 atomic regions from SNP 93107 to 93707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,128 DEBUG Processing 5/708 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,180 DEBUG Processing 474/666 atomic regions from SNP 142017 to 142617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,338 DEBUG Processing 312/725 atomic regions from SNP 93407 to 94007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,349 DEBUG Processing 6/708 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,393 DEBUG Processing 475/666 atomic regions from SNP 142317 to 142917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,544 DEBUG Processing 313/725 atomic regions from SNP 93707 to 94307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,586 DEBUG Processing 7/708 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,605 DEBUG Processing 476/666 atomic regions from SNP 142617 to 143217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,755 DEBUG Processing 314/725 atomic regions from SNP 94007 to 94607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,816 DEBUG Processing 477/666 atomic regions from SNP 142917 to 143517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,826 DEBUG Processing 8/708 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,963 DEBUG Processing 315/725 atomic regions from SNP 94307 to 94907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,028 DEBUG Processing 478/666 atomic regions from SNP 143217 to 143817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,041 DEBUG Processing 9/708 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,174 DEBUG Processing 316/725 atomic regions from SNP 94607 to 95207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,240 DEBUG Processing 479/666 atomic regions from SNP 143517 to 144117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,262 DEBUG Processing 10/708 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,408 DEBUG Processing 317/725 atomic regions from SNP 94907 to 95507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,449 DEBUG Processing 480/666 atomic regions from SNP 143817 to 144417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,488 DEBUG Processing 11/708 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,632 DEBUG Processing 318/725 atomic regions from SNP 95207 to 95807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,661 DEBUG Processing 481/666 atomic regions from SNP 144117 to 144717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,721 DEBUG Processing 12/708 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,843 DEBUG Processing 319/725 atomic regions from SNP 95507 to 96107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,869 DEBUG Processing 482/666 atomic regions from SNP 144417 to 145017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,948 DEBUG Processing 13/708 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,077 DEBUG Processing 483/666 atomic regions from SNP 144717 to 145317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,079 DEBUG Processing 320/725 atomic regions from SNP 95807 to 96407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,155 DEBUG Processing 14/708 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,288 DEBUG Processing 484/666 atomic regions from SNP 145017 to 145617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,323 DEBUG Processing 321/725 atomic regions from SNP 96107 to 96707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,354 DEBUG Processing 15/708 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,494 DEBUG Processing 485/666 atomic regions from SNP 145317 to 145917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,553 DEBUG Processing 322/725 atomic regions from SNP 96407 to 97007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,560 DEBUG Processing 16/708 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,699 DEBUG Processing 486/666 atomic regions from SNP 145617 to 146217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,768 DEBUG Processing 323/725 atomic regions from SNP 96707 to 97307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,769 DEBUG Processing 17/708 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,898 DEBUG Processing 487/666 atomic regions from SNP 145917 to 146517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,992 DEBUG Processing 18/708 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,997 DEBUG Processing 324/725 atomic regions from SNP 97007 to 97607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,095 DEBUG Processing 488/666 atomic regions from SNP 146217 to 146817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,195 DEBUG Processing 19/708 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,230 DEBUG Processing 325/725 atomic regions from SNP 97307 to 97907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,291 DEBUG Processing 489/666 atomic regions from SNP 146517 to 147117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,413 DEBUG Processing 20/708 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,462 DEBUG Processing 326/725 atomic regions from SNP 97607 to 98207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,496 DEBUG Processing 490/666 atomic regions from SNP 146817 to 147417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,638 DEBUG Processing 21/708 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,683 DEBUG Processing 327/725 atomic regions from SNP 97907 to 98507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,697 DEBUG Processing 491/666 atomic regions from SNP 147117 to 147717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,867 DEBUG Processing 22/708 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,900 DEBUG Processing 492/666 atomic regions from SNP 147417 to 148017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,909 DEBUG Processing 328/725 atomic regions from SNP 98207 to 98807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,074 DEBUG Processing 23/708 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,103 DEBUG Processing 493/666 atomic regions from SNP 147717 to 148317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,146 DEBUG Processing 329/725 atomic regions from SNP 98507 to 99107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,270 DEBUG Processing 24/708 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,305 DEBUG Processing 494/666 atomic regions from SNP 148017 to 148617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,377 DEBUG Processing 330/725 atomic regions from SNP 98807 to 99407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,466 DEBUG Processing 25/708 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,508 DEBUG Processing 495/666 atomic regions from SNP 148317 to 148917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,607 DEBUG Processing 331/725 atomic regions from SNP 99107 to 99707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,659 DEBUG Processing 26/708 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,702 DEBUG Processing 496/666 atomic regions from SNP 148617 to 149217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,826 DEBUG Processing 332/725 atomic regions from SNP 99407 to 100007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,855 DEBUG Processing 27/708 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,900 DEBUG Processing 497/666 atomic regions from SNP 148917 to 149517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,036 DEBUG Processing 333/725 atomic regions from SNP 99707 to 100307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,056 DEBUG Processing 28/708 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,105 DEBUG Processing 498/666 atomic regions from SNP 149217 to 149817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,243 DEBUG Processing 334/725 atomic regions from SNP 100007 to 100607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,253 DEBUG Processing 29/708 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,306 DEBUG Processing 499/666 atomic regions from SNP 149517 to 150117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,452 DEBUG Processing 30/708 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,464 DEBUG Processing 335/725 atomic regions from SNP 100307 to 100907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,517 DEBUG Processing 500/666 atomic regions from SNP 149817 to 150417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,647 DEBUG Processing 31/708 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,679 DEBUG Processing 336/725 atomic regions from SNP 100607 to 101207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,715 DEBUG Processing 501/666 atomic regions from SNP 150117 to 150717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,841 DEBUG Processing 32/708 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,912 DEBUG Processing 337/725 atomic regions from SNP 100907 to 101507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,916 DEBUG Processing 502/666 atomic regions from SNP 150417 to 151017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,034 DEBUG Processing 33/708 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,116 DEBUG Processing 503/666 atomic regions from SNP 150717 to 151317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,144 DEBUG Processing 338/725 atomic regions from SNP 101207 to 101807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,228 DEBUG Processing 34/708 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,314 DEBUG Processing 504/666 atomic regions from SNP 151017 to 151617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,351 DEBUG Processing 339/725 atomic regions from SNP 101507 to 102107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,423 DEBUG Processing 35/708 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,512 DEBUG Processing 505/666 atomic regions from SNP 151317 to 151917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,552 DEBUG Processing 340/725 atomic regions from SNP 101807 to 102407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,614 DEBUG Processing 36/708 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,709 DEBUG Processing 506/666 atomic regions from SNP 151617 to 152217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,753 DEBUG Processing 341/725 atomic regions from SNP 102107 to 102707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,806 DEBUG Processing 37/708 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,906 DEBUG Processing 507/666 atomic regions from SNP 151917 to 152517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,953 DEBUG Processing 342/725 atomic regions from SNP 102407 to 103007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,001 DEBUG Processing 38/708 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,099 DEBUG Processing 508/666 atomic regions from SNP 152217 to 152817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,152 DEBUG Processing 343/725 atomic regions from SNP 102707 to 103307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,197 DEBUG Processing 39/708 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,291 DEBUG Processing 509/666 atomic regions from SNP 152517 to 153117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,357 DEBUG Processing 344/725 atomic regions from SNP 103007 to 103607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,397 DEBUG Processing 40/708 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,487 DEBUG Processing 510/666 atomic regions from SNP 152817 to 153417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,557 DEBUG Processing 345/725 atomic regions from SNP 103307 to 103907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,592 DEBUG Processing 41/708 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,682 DEBUG Processing 511/666 atomic regions from SNP 153117 to 153717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,758 DEBUG Processing 346/725 atomic regions from SNP 103607 to 104207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,788 DEBUG Processing 42/708 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,879 DEBUG Processing 512/666 atomic regions from SNP 153417 to 154017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,962 DEBUG Processing 347/725 atomic regions from SNP 103907 to 104507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,986 DEBUG Processing 43/708 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,074 DEBUG Processing 513/666 atomic regions from SNP 153717 to 154317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,177 DEBUG Processing 348/725 atomic regions from SNP 104207 to 104807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,192 DEBUG Processing 44/708 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,268 DEBUG Processing 514/666 atomic regions from SNP 154017 to 154617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,383 DEBUG Processing 349/725 atomic regions from SNP 104507 to 105107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,395 DEBUG Processing 45/708 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,466 DEBUG Processing 515/666 atomic regions from SNP 154317 to 154917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,589 DEBUG Processing 350/725 atomic regions from SNP 104807 to 105407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,600 DEBUG Processing 46/708 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,672 DEBUG Processing 516/666 atomic regions from SNP 154617 to 155217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,795 DEBUG Processing 351/725 atomic regions from SNP 105107 to 105707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,800 DEBUG Processing 47/708 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,878 DEBUG Processing 517/666 atomic regions from SNP 154917 to 155517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,002 DEBUG Processing 48/708 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,027 DEBUG Processing 352/725 atomic regions from SNP 105407 to 106007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,076 DEBUG Processing 518/666 atomic regions from SNP 155217 to 155817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,202 DEBUG Processing 49/708 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,248 DEBUG Processing 353/725 atomic regions from SNP 105707 to 106307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,277 DEBUG Processing 519/666 atomic regions from SNP 155517 to 156117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,404 DEBUG Processing 50/708 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,472 DEBUG Processing 354/725 atomic regions from SNP 106007 to 106607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,481 DEBUG Processing 520/666 atomic regions from SNP 155817 to 156417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,613 DEBUG Processing 51/708 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,684 DEBUG Processing 521/666 atomic regions from SNP 156117 to 156717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,703 DEBUG Processing 355/725 atomic regions from SNP 106307 to 106907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,809 DEBUG Processing 52/708 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,887 DEBUG Processing 522/666 atomic regions from SNP 156417 to 157017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,919 DEBUG Processing 356/725 atomic regions from SNP 106607 to 107207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,007 DEBUG Processing 53/708 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,090 DEBUG Processing 523/666 atomic regions from SNP 156717 to 157317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,140 DEBUG Processing 357/725 atomic regions from SNP 106907 to 107507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,207 DEBUG Processing 54/708 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,289 DEBUG Processing 524/666 atomic regions from SNP 157017 to 157617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,371 DEBUG Processing 358/725 atomic regions from SNP 107207 to 107807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,406 DEBUG Processing 55/708 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,486 DEBUG Processing 525/666 atomic regions from SNP 157317 to 157917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,580 DEBUG Processing 359/725 atomic regions from SNP 107507 to 108107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,602 DEBUG Processing 56/708 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,683 DEBUG Processing 526/666 atomic regions from SNP 157617 to 158217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,797 DEBUG Processing 360/725 atomic regions from SNP 107807 to 108407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,798 DEBUG Processing 57/708 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,877 DEBUG Processing 527/666 atomic regions from SNP 157917 to 158517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,000 DEBUG Processing 58/708 atomic regions from SNP 17157 to 17757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,002 DEBUG Processing 361/725 atomic regions from SNP 108107 to 108707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,071 DEBUG Processing 528/666 atomic regions from SNP 158217 to 158817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,199 DEBUG Processing 59/708 atomic regions from SNP 17457 to 18057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,208 DEBUG Processing 362/725 atomic regions from SNP 108407 to 109007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,265 DEBUG Processing 529/666 atomic regions from SNP 158517 to 159117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,401 DEBUG Processing 60/708 atomic regions from SNP 17757 to 18357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,429 DEBUG Processing 363/725 atomic regions from SNP 108707 to 109307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,459 DEBUG Processing 530/666 atomic regions from SNP 158817 to 159417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,601 DEBUG Processing 61/708 atomic regions from SNP 18057 to 18657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,652 DEBUG Processing 364/725 atomic regions from SNP 109007 to 109607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,652 DEBUG Processing 531/666 atomic regions from SNP 159117 to 159717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,797 DEBUG Processing 62/708 atomic regions from SNP 18357 to 18957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,852 DEBUG Processing 532/666 atomic regions from SNP 159417 to 160017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,883 DEBUG Processing 365/725 atomic regions from SNP 109307 to 109907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,995 DEBUG Processing 63/708 atomic regions from SNP 18657 to 19257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,051 DEBUG Processing 533/666 atomic regions from SNP 159717 to 160317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,119 DEBUG Processing 366/725 atomic regions from SNP 109607 to 110207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,193 DEBUG Processing 64/708 atomic regions from SNP 18957 to 19557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,249 DEBUG Processing 534/666 atomic regions from SNP 160017 to 160617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,341 DEBUG Processing 367/725 atomic regions from SNP 109907 to 110507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,393 DEBUG Processing 65/708 atomic regions from SNP 19257 to 19857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,443 DEBUG Processing 535/666 atomic regions from SNP 160317 to 160917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,567 DEBUG Processing 368/725 atomic regions from SNP 110207 to 110807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,599 DEBUG Processing 66/708 atomic regions from SNP 19557 to 20157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,637 DEBUG Processing 536/666 atomic regions from SNP 160617 to 161217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,798 DEBUG Processing 369/725 atomic regions from SNP 110507 to 111107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,805 DEBUG Processing 67/708 atomic regions from SNP 19857 to 20457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,833 DEBUG Processing 537/666 atomic regions from SNP 160917 to 161517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,010 DEBUG Processing 68/708 atomic regions from SNP 20157 to 20757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,026 DEBUG Processing 370/725 atomic regions from SNP 110807 to 111407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,037 DEBUG Processing 538/666 atomic regions from SNP 161217 to 161817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,219 DEBUG Processing 69/708 atomic regions from SNP 20457 to 21057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,242 DEBUG Processing 539/666 atomic regions from SNP 161517 to 162117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,268 DEBUG Processing 371/725 atomic regions from SNP 111107 to 111707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,420 DEBUG Processing 70/708 atomic regions from SNP 20757 to 21357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,446 DEBUG Processing 540/666 atomic regions from SNP 161817 to 162417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,493 DEBUG Processing 372/725 atomic regions from SNP 111407 to 112007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,619 DEBUG Processing 71/708 atomic regions from SNP 21057 to 21657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,651 DEBUG Processing 541/666 atomic regions from SNP 162117 to 162717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,727 DEBUG Processing 373/725 atomic regions from SNP 111707 to 112307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,816 DEBUG Processing 72/708 atomic regions from SNP 21357 to 21957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,853 DEBUG Processing 542/666 atomic regions from SNP 162417 to 163017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,945 DEBUG Processing 374/725 atomic regions from SNP 112007 to 112607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,015 DEBUG Processing 73/708 atomic regions from SNP 21657 to 22257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,072 DEBUG Processing 543/666 atomic regions from SNP 162717 to 163317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,175 DEBUG Processing 375/725 atomic regions from SNP 112307 to 112907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,213 DEBUG Processing 74/708 atomic regions from SNP 21957 to 22557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,276 DEBUG Processing 544/666 atomic regions from SNP 163017 to 163617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,396 DEBUG Processing 376/725 atomic regions from SNP 112607 to 113207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,413 DEBUG Processing 75/708 atomic regions from SNP 22257 to 22857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,471 DEBUG Processing 545/666 atomic regions from SNP 163317 to 163917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,612 DEBUG Processing 76/708 atomic regions from SNP 22557 to 23157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,616 DEBUG Processing 377/725 atomic regions from SNP 112907 to 113507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,669 DEBUG Processing 546/666 atomic regions from SNP 163617 to 164217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,806 DEBUG Processing 77/708 atomic regions from SNP 22857 to 23457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,834 DEBUG Processing 378/725 atomic regions from SNP 113207 to 113807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,870 DEBUG Processing 547/666 atomic regions from SNP 163917 to 164517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,001 DEBUG Processing 78/708 atomic regions from SNP 23157 to 23757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,068 DEBUG Processing 379/725 atomic regions from SNP 113507 to 114107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,071 DEBUG Processing 548/666 atomic regions from SNP 164217 to 164817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,194 DEBUG Processing 79/708 atomic regions from SNP 23457 to 24057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,272 DEBUG Processing 549/666 atomic regions from SNP 164517 to 165117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,287 DEBUG Processing 380/725 atomic regions from SNP 113807 to 114407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,387 DEBUG Processing 80/708 atomic regions from SNP 23757 to 24357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,472 DEBUG Processing 550/666 atomic regions from SNP 164817 to 165417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,495 DEBUG Processing 381/725 atomic regions from SNP 114107 to 114707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,584 DEBUG Processing 81/708 atomic regions from SNP 24057 to 24657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,668 DEBUG Processing 551/666 atomic regions from SNP 165117 to 165717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,714 DEBUG Processing 382/725 atomic regions from SNP 114407 to 115007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,784 DEBUG Processing 82/708 atomic regions from SNP 24357 to 24957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,866 DEBUG Processing 552/666 atomic regions from SNP 165417 to 166017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,925 DEBUG Processing 383/725 atomic regions from SNP 114707 to 115307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,985 DEBUG Processing 83/708 atomic regions from SNP 24657 to 25257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,063 DEBUG Processing 553/666 atomic regions from SNP 165717 to 166317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,155 DEBUG Processing 384/725 atomic regions from SNP 115007 to 115607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,183 DEBUG Processing 84/708 atomic regions from SNP 24957 to 25557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,260 DEBUG Processing 554/666 atomic regions from SNP 166017 to 166617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,378 DEBUG Processing 385/725 atomic regions from SNP 115307 to 115907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,383 DEBUG Processing 85/708 atomic regions from SNP 25257 to 25857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,467 DEBUG Processing 555/666 atomic regions from SNP 166317 to 166917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,580 DEBUG Processing 386/725 atomic regions from SNP 115607 to 116207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,582 DEBUG Processing 86/708 atomic regions from SNP 25557 to 26157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,663 DEBUG Processing 556/666 atomic regions from SNP 166617 to 167217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,782 DEBUG Processing 387/725 atomic regions from SNP 115907 to 116507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,783 DEBUG Processing 87/708 atomic regions from SNP 25857 to 26457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,859 DEBUG Processing 557/666 atomic regions from SNP 166917 to 167517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,986 DEBUG Processing 88/708 atomic regions from SNP 26157 to 26757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,989 DEBUG Processing 388/725 atomic regions from SNP 116207 to 116807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,060 DEBUG Processing 558/666 atomic regions from SNP 167217 to 167817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,192 DEBUG Processing 89/708 atomic regions from SNP 26457 to 27057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,214 DEBUG Processing 389/725 atomic regions from SNP 116507 to 117107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,262 DEBUG Processing 559/666 atomic regions from SNP 167517 to 168117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,397 DEBUG Processing 90/708 atomic regions from SNP 26757 to 27357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,432 DEBUG Processing 390/725 atomic regions from SNP 116807 to 117407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,467 DEBUG Processing 560/666 atomic regions from SNP 167817 to 168417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,598 DEBUG Processing 91/708 atomic regions from SNP 27057 to 27657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,637 DEBUG Processing 391/725 atomic regions from SNP 117107 to 117707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,667 DEBUG Processing 561/666 atomic regions from SNP 168117 to 168717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,797 DEBUG Processing 92/708 atomic regions from SNP 27357 to 27957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,840 DEBUG Processing 392/725 atomic regions from SNP 117407 to 118007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,865 DEBUG Processing 562/666 atomic regions from SNP 168417 to 169017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,997 DEBUG Processing 93/708 atomic regions from SNP 27657 to 28257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,040 DEBUG Processing 393/725 atomic regions from SNP 117707 to 118307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,064 DEBUG Processing 563/666 atomic regions from SNP 168717 to 169317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,193 DEBUG Processing 94/708 atomic regions from SNP 27957 to 28557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,239 DEBUG Processing 394/725 atomic regions from SNP 118007 to 118607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,261 DEBUG Processing 564/666 atomic regions from SNP 169017 to 169617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,387 DEBUG Processing 95/708 atomic regions from SNP 28257 to 28857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,439 DEBUG Processing 395/725 atomic regions from SNP 118307 to 118907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,458 DEBUG Processing 565/666 atomic regions from SNP 169317 to 169917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,583 DEBUG Processing 96/708 atomic regions from SNP 28557 to 29157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,643 DEBUG Processing 396/725 atomic regions from SNP 118607 to 119207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,662 DEBUG Processing 566/666 atomic regions from SNP 169617 to 170217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,786 DEBUG Processing 97/708 atomic regions from SNP 28857 to 29457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,855 DEBUG Processing 397/725 atomic regions from SNP 118907 to 119507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,868 DEBUG Processing 567/666 atomic regions from SNP 169917 to 170517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,994 DEBUG Processing 98/708 atomic regions from SNP 29157 to 29757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,056 DEBUG Processing 398/725 atomic regions from SNP 119207 to 119807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,076 DEBUG Processing 568/666 atomic regions from SNP 170217 to 170817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,201 DEBUG Processing 99/708 atomic regions from SNP 29457 to 30057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,260 DEBUG Processing 399/725 atomic regions from SNP 119507 to 120107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,275 DEBUG Processing 569/666 atomic regions from SNP 170517 to 171117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,404 DEBUG Processing 100/708 atomic regions from SNP 29757 to 30357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,465 DEBUG Processing 400/725 atomic regions from SNP 119807 to 120407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,477 DEBUG Processing 570/666 atomic regions from SNP 170817 to 171417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,612 DEBUG Processing 101/708 atomic regions from SNP 30057 to 30657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,668 DEBUG Processing 401/725 atomic regions from SNP 120107 to 120707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,681 DEBUG Processing 571/666 atomic regions from SNP 171117 to 171717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,815 DEBUG Processing 102/708 atomic regions from SNP 30357 to 30957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,887 DEBUG Processing 402/725 atomic regions from SNP 120407 to 121007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,895 DEBUG Processing 572/666 atomic regions from SNP 171417 to 172017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,010 DEBUG Processing 103/708 atomic regions from SNP 30657 to 31257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,095 DEBUG Processing 403/725 atomic regions from SNP 120707 to 121307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,100 DEBUG Processing 573/666 atomic regions from SNP 171717 to 172317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,203 DEBUG Processing 104/708 atomic regions from SNP 30957 to 31557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,300 DEBUG Processing 404/725 atomic regions from SNP 121007 to 121607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,303 DEBUG Processing 574/666 atomic regions from SNP 172017 to 172617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,394 DEBUG Processing 105/708 atomic regions from SNP 31257 to 31857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,504 DEBUG Processing 575/666 atomic regions from SNP 172317 to 172917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,506 DEBUG Processing 405/725 atomic regions from SNP 121307 to 121907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,586 DEBUG Processing 106/708 atomic regions from SNP 31557 to 32157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,705 DEBUG Processing 576/666 atomic regions from SNP 172617 to 173217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,715 DEBUG Processing 406/725 atomic regions from SNP 121607 to 122207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,778 DEBUG Processing 107/708 atomic regions from SNP 31857 to 32457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,906 DEBUG Processing 577/666 atomic regions from SNP 172917 to 173517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,927 DEBUG Processing 407/725 atomic regions from SNP 121907 to 122507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,972 DEBUG Processing 108/708 atomic regions from SNP 32157 to 32757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,105 DEBUG Processing 578/666 atomic regions from SNP 173217 to 173817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,153 DEBUG Processing 408/725 atomic regions from SNP 122207 to 122807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,168 DEBUG Processing 109/708 atomic regions from SNP 32457 to 33057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,304 DEBUG Processing 579/666 atomic regions from SNP 173517 to 174117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,372 DEBUG Processing 409/725 atomic regions from SNP 122507 to 123107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,377 DEBUG Processing 110/708 atomic regions from SNP 32757 to 33357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,502 DEBUG Processing 580/666 atomic regions from SNP 173817 to 174417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,578 DEBUG Processing 111/708 atomic regions from SNP 33057 to 33657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,592 DEBUG Processing 410/725 atomic regions from SNP 122807 to 123407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,656 DEBUG Segmenting atomic regions: 2025-01-31 09:53:51,700 DEBUG Processing 581/666 atomic regions from SNP 174117 to 174717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,743 DEBUG Processing 1/677 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,775 DEBUG Processing 112/708 atomic regions from SNP 33357 to 33957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,790 DEBUG Processing 411/725 atomic regions from SNP 123107 to 123707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,899 DEBUG Processing 582/666 atomic regions from SNP 174417 to 175017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,945 DEBUG Processing 2/677 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,980 DEBUG Processing 113/708 atomic regions from SNP 33657 to 34257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,001 DEBUG Processing 412/725 atomic regions from SNP 123407 to 124007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,101 DEBUG Processing 583/666 atomic regions from SNP 174717 to 175317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,149 DEBUG Processing 3/677 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,211 DEBUG Processing 114/708 atomic regions from SNP 33957 to 34557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,229 DEBUG Processing 413/725 atomic regions from SNP 123707 to 124307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,298 DEBUG Processing 584/666 atomic regions from SNP 175017 to 175617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,375 DEBUG Processing 4/677 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,431 DEBUG Processing 414/725 atomic regions from SNP 124007 to 124607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,437 DEBUG Processing 115/708 atomic regions from SNP 34257 to 34857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,495 DEBUG Processing 585/666 atomic regions from SNP 175317 to 175917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,532 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:53:52,580 DEBUG Processing 5/677 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,636 DEBUG Processing 415/725 atomic regions from SNP 124307 to 124907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,637 DEBUG Processing 116/708 atomic regions from SNP 34557 to 35157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,693 DEBUG Processing 586/666 atomic regions from SNP 175617 to 176217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,783 DEBUG Processing 6/677 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,835 DEBUG Processing 117/708 atomic regions from SNP 34857 to 35457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,859 DEBUG Processing 416/725 atomic regions from SNP 124607 to 125207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,889 DEBUG Processing 587/666 atomic regions from SNP 175917 to 176517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,982 DEBUG Processing 7/677 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,030 DEBUG Processing 118/708 atomic regions from SNP 35157 to 35757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,066 DEBUG Processing 417/725 atomic regions from SNP 124907 to 125507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,088 DEBUG Processing 588/666 atomic regions from SNP 176217 to 176817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,181 DEBUG Processing 8/677 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,227 DEBUG Processing 119/708 atomic regions from SNP 35457 to 36057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,289 DEBUG Processing 589/666 atomic regions from SNP 176517 to 177117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,308 DEBUG Processing 418/725 atomic regions from SNP 125207 to 125807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,378 DEBUG Processing 9/677 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,424 DEBUG Processing 120/708 atomic regions from SNP 35757 to 36357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,489 DEBUG Processing 590/666 atomic regions from SNP 176817 to 177417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,534 DEBUG Processing 419/725 atomic regions from SNP 125507 to 126107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,577 DEBUG Processing 10/677 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,629 DEBUG Processing 121/708 atomic regions from SNP 36057 to 36657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,692 DEBUG Processing 591/666 atomic regions from SNP 177117 to 177717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,754 DEBUG Processing 420/725 atomic regions from SNP 125807 to 126407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,777 DEBUG Processing 11/677 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,826 DEBUG Processing 122/708 atomic regions from SNP 36357 to 36957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,890 DEBUG Processing 592/666 atomic regions from SNP 177417 to 178017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,961 DEBUG Processing 421/725 atomic regions from SNP 126107 to 126707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,974 DEBUG Processing 12/677 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,024 DEBUG Processing 123/708 atomic regions from SNP 36657 to 37257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,086 DEBUG Processing 593/666 atomic regions from SNP 177717 to 178317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,171 DEBUG Processing 422/725 atomic regions from SNP 126407 to 127007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,173 DEBUG Processing 13/677 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,224 DEBUG Processing 124/708 atomic regions from SNP 36957 to 37557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,283 DEBUG Processing 594/666 atomic regions from SNP 178017 to 178617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,369 DEBUG Processing 14/677 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,373 DEBUG Processing 423/725 atomic regions from SNP 126707 to 127307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,422 DEBUG Processing 125/708 atomic regions from SNP 37257 to 37857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,479 DEBUG Processing 595/666 atomic regions from SNP 178317 to 178917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,566 DEBUG Processing 15/677 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,574 DEBUG Processing 424/725 atomic regions from SNP 127007 to 127607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,622 DEBUG Processing 126/708 atomic regions from SNP 37557 to 38157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,674 DEBUG Processing 596/666 atomic regions from SNP 178617 to 179217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,760 DEBUG Processing 16/677 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,776 DEBUG Processing 425/725 atomic regions from SNP 127307 to 127907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,822 DEBUG Processing 127/708 atomic regions from SNP 37857 to 38457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,872 DEBUG Processing 597/666 atomic regions from SNP 178917 to 179517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,956 DEBUG Processing 17/677 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,981 DEBUG Processing 426/725 atomic regions from SNP 127607 to 128207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,023 DEBUG Processing 128/708 atomic regions from SNP 38157 to 38757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,071 DEBUG Processing 598/666 atomic regions from SNP 179217 to 179817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,152 DEBUG Processing 18/677 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,184 DEBUG Processing 427/725 atomic regions from SNP 127907 to 128507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,223 DEBUG Processing 129/708 atomic regions from SNP 38457 to 39057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,271 DEBUG Processing 599/666 atomic regions from SNP 179517 to 180117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,348 DEBUG Processing 19/677 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,385 DEBUG Processing 428/725 atomic regions from SNP 128207 to 128807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,420 DEBUG Processing 130/708 atomic regions from SNP 38757 to 39357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,471 DEBUG Processing 600/666 atomic regions from SNP 179817 to 180417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,544 DEBUG Processing 20/677 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,585 DEBUG Processing 429/725 atomic regions from SNP 128507 to 129107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,617 DEBUG Processing 131/708 atomic regions from SNP 39057 to 39657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,670 DEBUG Processing 601/666 atomic regions from SNP 180117 to 180717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,739 DEBUG Processing 21/677 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,787 DEBUG Processing 430/725 atomic regions from SNP 128807 to 129407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,816 DEBUG Processing 132/708 atomic regions from SNP 39357 to 39957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,869 DEBUG Processing 602/666 atomic regions from SNP 180417 to 181017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,939 DEBUG Processing 22/677 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,991 DEBUG Processing 431/725 atomic regions from SNP 129107 to 129707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,016 DEBUG Processing 133/708 atomic regions from SNP 39657 to 40257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,067 DEBUG Processing 603/666 atomic regions from SNP 180717 to 181317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,136 DEBUG Processing 23/677 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,197 DEBUG Processing 432/725 atomic regions from SNP 129407 to 130007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,215 DEBUG Processing 134/708 atomic regions from SNP 39957 to 40557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,270 DEBUG Processing 604/666 atomic regions from SNP 181017 to 181617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,338 DEBUG Processing 24/677 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,416 DEBUG Processing 433/725 atomic regions from SNP 129707 to 130307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,416 DEBUG Processing 135/708 atomic regions from SNP 40257 to 40857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,470 DEBUG Processing 605/666 atomic regions from SNP 181317 to 181917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,545 DEBUG Processing 25/677 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,617 DEBUG Processing 136/708 atomic regions from SNP 40557 to 41157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,625 DEBUG Processing 434/725 atomic regions from SNP 130007 to 130607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,668 DEBUG Processing 606/666 atomic regions from SNP 181617 to 182217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,745 DEBUG Processing 26/677 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,813 DEBUG Processing 137/708 atomic regions from SNP 40857 to 41457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,842 DEBUG Processing 435/725 atomic regions from SNP 130307 to 130907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,868 DEBUG Processing 607/666 atomic regions from SNP 181917 to 182517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,939 DEBUG Processing 27/677 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,005 DEBUG Processing 138/708 atomic regions from SNP 41157 to 41757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,066 DEBUG Processing 608/666 atomic regions from SNP 182217 to 182817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,066 DEBUG Processing 436/725 atomic regions from SNP 130607 to 131207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,134 DEBUG Processing 28/677 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,197 DEBUG Processing 139/708 atomic regions from SNP 41457 to 42057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,263 DEBUG Processing 609/666 atomic regions from SNP 182517 to 183117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,292 DEBUG Processing 437/725 atomic regions from SNP 130907 to 131507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,331 DEBUG Processing 29/677 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,393 DEBUG Processing 140/708 atomic regions from SNP 41757 to 42357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,464 DEBUG Processing 610/666 atomic regions from SNP 182817 to 183417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,499 DEBUG Processing 438/725 atomic regions from SNP 131207 to 131807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,534 DEBUG Processing 30/677 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,591 DEBUG Processing 141/708 atomic regions from SNP 42057 to 42657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,667 DEBUG Processing 611/666 atomic regions from SNP 183117 to 183717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,708 DEBUG Processing 439/725 atomic regions from SNP 131507 to 132107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,735 DEBUG Processing 31/677 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,792 DEBUG Processing 142/708 atomic regions from SNP 42357 to 42957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,866 DEBUG Processing 612/666 atomic regions from SNP 183417 to 184017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,913 DEBUG Processing 440/725 atomic regions from SNP 131807 to 132407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,935 DEBUG Processing 32/677 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,996 DEBUG Processing 143/708 atomic regions from SNP 42657 to 43257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,064 DEBUG Processing 613/666 atomic regions from SNP 183717 to 184317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,117 DEBUG Processing 441/725 atomic regions from SNP 132107 to 132707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,132 DEBUG Processing 33/677 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,197 DEBUG Processing 144/708 atomic regions from SNP 42957 to 43557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,258 DEBUG Processing 614/666 atomic regions from SNP 184017 to 184617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,316 DEBUG Processing 442/725 atomic regions from SNP 132407 to 133007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,351 DEBUG Processing 34/677 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,399 DEBUG Processing 145/708 atomic regions from SNP 43257 to 43857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,453 DEBUG Processing 615/666 atomic regions from SNP 184317 to 184917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,519 DEBUG Processing 443/725 atomic regions from SNP 132707 to 133307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,567 DEBUG Processing 35/677 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,598 DEBUG Processing 146/708 atomic regions from SNP 43557 to 44157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,649 DEBUG Processing 616/666 atomic regions from SNP 184617 to 185217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,718 DEBUG Processing 444/725 atomic regions from SNP 133007 to 133607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,774 DEBUG Processing 36/677 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,802 DEBUG Processing 147/708 atomic regions from SNP 43857 to 44457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,855 DEBUG Processing 617/666 atomic regions from SNP 184917 to 185517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,926 DEBUG Processing 445/725 atomic regions from SNP 133307 to 133907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,969 DEBUG Processing 37/677 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,002 DEBUG Processing 148/708 atomic regions from SNP 44157 to 44757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,054 DEBUG Processing 618/666 atomic regions from SNP 185217 to 185817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,126 DEBUG Processing 446/725 atomic regions from SNP 133607 to 134207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,165 DEBUG Processing 38/677 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,198 DEBUG Processing 149/708 atomic regions from SNP 44457 to 45057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,254 DEBUG Processing 619/666 atomic regions from SNP 185517 to 186117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,328 DEBUG Processing 447/725 atomic regions from SNP 133907 to 134507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,369 DEBUG Processing 39/677 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,399 DEBUG Processing 150/708 atomic regions from SNP 44757 to 45357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,456 DEBUG Processing 620/666 atomic regions from SNP 185817 to 186417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,528 DEBUG Processing 448/725 atomic regions from SNP 134207 to 134807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,562 DEBUG Processing 40/677 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,593 DEBUG Processing 151/708 atomic regions from SNP 45057 to 45657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,654 DEBUG Processing 621/666 atomic regions from SNP 186117 to 186717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,728 DEBUG Processing 449/725 atomic regions from SNP 134507 to 135107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,757 DEBUG Processing 41/677 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,797 DEBUG Processing 152/708 atomic regions from SNP 45357 to 45957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,850 DEBUG Processing 622/666 atomic regions from SNP 186417 to 187017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,928 DEBUG Processing 450/725 atomic regions from SNP 134807 to 135407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,953 DEBUG Processing 42/677 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,011 DEBUG Processing 153/708 atomic regions from SNP 45657 to 46257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,049 DEBUG Processing 623/666 atomic regions from SNP 186717 to 187317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,149 DEBUG Processing 451/725 atomic regions from SNP 135107 to 135707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,151 DEBUG Processing 43/677 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,207 DEBUG Processing 154/708 atomic regions from SNP 45957 to 46557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,244 DEBUG Processing 624/666 atomic regions from SNP 187017 to 187617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,344 DEBUG Processing 44/677 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,371 DEBUG Processing 452/725 atomic regions from SNP 135407 to 136007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,404 DEBUG Processing 155/708 atomic regions from SNP 46257 to 46857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,441 DEBUG Processing 625/666 atomic regions from SNP 187317 to 187917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,536 DEBUG Processing 45/677 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,583 DEBUG Processing 453/725 atomic regions from SNP 135707 to 136307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,597 DEBUG Processing 156/708 atomic regions from SNP 46557 to 47157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,636 DEBUG Processing 626/666 atomic regions from SNP 187617 to 188217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,730 DEBUG Processing 46/677 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,794 DEBUG Processing 157/708 atomic regions from SNP 46857 to 47457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,805 DEBUG Processing 454/725 atomic regions from SNP 136007 to 136607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,837 DEBUG Processing 627/666 atomic regions from SNP 187917 to 188517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,921 DEBUG Processing 47/677 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,989 DEBUG Processing 158/708 atomic regions from SNP 47157 to 47757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,015 DEBUG Processing 455/725 atomic regions from SNP 136307 to 136907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,036 DEBUG Processing 628/666 atomic regions from SNP 188217 to 188817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,112 DEBUG Processing 48/677 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,184 DEBUG Processing 159/708 atomic regions from SNP 47457 to 48057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,215 DEBUG Processing 456/725 atomic regions from SNP 136607 to 137207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,234 DEBUG Processing 629/666 atomic regions from SNP 188517 to 189117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,299 DEBUG Processing 49/677 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,378 DEBUG Processing 160/708 atomic regions from SNP 47757 to 48357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,414 DEBUG Processing 457/725 atomic regions from SNP 136907 to 137507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,430 DEBUG Processing 630/666 atomic regions from SNP 188817 to 189417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,490 DEBUG Processing 50/677 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,573 DEBUG Processing 161/708 atomic regions from SNP 48057 to 48657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,618 DEBUG Processing 458/725 atomic regions from SNP 137207 to 137807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,626 DEBUG Processing 631/666 atomic regions from SNP 189117 to 189717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,692 DEBUG Processing 51/677 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,768 DEBUG Processing 162/708 atomic regions from SNP 48357 to 48957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,822 DEBUG Processing 459/725 atomic regions from SNP 137507 to 138107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,830 DEBUG Processing 632/666 atomic regions from SNP 189417 to 190017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,889 DEBUG Processing 52/677 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,966 DEBUG Processing 163/708 atomic regions from SNP 48657 to 49257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,025 DEBUG Processing 460/725 atomic regions from SNP 137807 to 138407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,032 DEBUG Processing 633/666 atomic regions from SNP 189717 to 190317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,087 DEBUG Processing 53/677 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,176 DEBUG Processing 164/708 atomic regions from SNP 48957 to 49557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,227 DEBUG Processing 461/725 atomic regions from SNP 138107 to 138707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,244 DEBUG Processing 634/666 atomic regions from SNP 190017 to 190617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,291 DEBUG Processing 54/677 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,405 DEBUG Processing 165/708 atomic regions from SNP 49257 to 49857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,428 DEBUG Processing 462/725 atomic regions from SNP 138407 to 139007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,442 DEBUG Processing 635/666 atomic regions from SNP 190317 to 190917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,507 DEBUG Processing 55/677 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,617 DEBUG Processing 166/708 atomic regions from SNP 49557 to 50157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,628 DEBUG Processing 463/725 atomic regions from SNP 138707 to 139307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,638 DEBUG Processing 636/666 atomic regions from SNP 190617 to 191217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,696 DEBUG Processing 56/677 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,826 DEBUG Processing 167/708 atomic regions from SNP 49857 to 50457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,829 DEBUG Processing 464/725 atomic regions from SNP 139007 to 139607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,836 DEBUG Processing 637/666 atomic regions from SNP 190917 to 191517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,886 DEBUG Processing 57/677 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,036 DEBUG Processing 465/725 atomic regions from SNP 139307 to 139907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,040 DEBUG Processing 638/666 atomic regions from SNP 191217 to 191817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,056 DEBUG Processing 168/708 atomic regions from SNP 50157 to 50757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,082 DEBUG Processing 58/677 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,238 DEBUG Processing 466/725 atomic regions from SNP 139607 to 140207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,242 DEBUG Processing 639/666 atomic regions from SNP 191517 to 192117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,253 DEBUG Processing 169/708 atomic regions from SNP 50457 to 51057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,281 DEBUG Processing 59/677 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,441 DEBUG Processing 467/725 atomic regions from SNP 139907 to 140507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,444 DEBUG Processing 640/666 atomic regions from SNP 191817 to 192417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,453 DEBUG Processing 170/708 atomic regions from SNP 50757 to 51357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,486 DEBUG Processing 60/677 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,646 DEBUG Processing 468/725 atomic regions from SNP 140207 to 140807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,647 DEBUG Processing 641/666 atomic regions from SNP 192117 to 192717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,654 DEBUG Processing 171/708 atomic regions from SNP 51057 to 51657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,705 DEBUG Processing 61/677 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,849 DEBUG Processing 642/666 atomic regions from SNP 192417 to 193017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,849 DEBUG Processing 469/725 atomic regions from SNP 140507 to 141107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,854 DEBUG Processing 172/708 atomic regions from SNP 51357 to 51957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,929 DEBUG Processing 62/677 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,050 DEBUG Processing 643/666 atomic regions from SNP 192717 to 193317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,054 DEBUG Processing 173/708 atomic regions from SNP 51657 to 52257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,055 DEBUG Processing 470/725 atomic regions from SNP 140807 to 141407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,132 DEBUG Processing 63/677 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,251 DEBUG Processing 644/666 atomic regions from SNP 193017 to 193617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,255 DEBUG Processing 174/708 atomic regions from SNP 51957 to 52557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,261 DEBUG Processing 471/725 atomic regions from SNP 141107 to 141707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,331 DEBUG Processing 64/677 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,453 DEBUG Processing 645/666 atomic regions from SNP 193317 to 193917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,460 DEBUG Processing 175/708 atomic regions from SNP 52257 to 52857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,471 DEBUG Processing 472/725 atomic regions from SNP 141407 to 142007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,530 DEBUG Processing 65/677 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,651 DEBUG Processing 646/666 atomic regions from SNP 193617 to 194217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,657 DEBUG Processing 176/708 atomic regions from SNP 52557 to 53157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,673 DEBUG Processing 473/725 atomic regions from SNP 141707 to 142307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,727 DEBUG Processing 66/677 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,850 DEBUG Processing 647/666 atomic regions from SNP 193917 to 194517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,852 DEBUG Processing 177/708 atomic regions from SNP 52857 to 53457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,876 DEBUG Processing 474/725 atomic regions from SNP 142007 to 142607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,925 DEBUG Processing 67/677 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,047 DEBUG Processing 178/708 atomic regions from SNP 53157 to 53757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,066 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:54:05,068 DEBUG chr12: Signal quantile: 0.993. signal threshold: 15. Best RMSEA: 0.019 2025-01-31 09:54:05,069 DEBUG Processing 648/666 atomic regions from SNP 194217 to 194817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,077 DEBUG Processing 475/725 atomic regions from SNP 142307 to 142907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,123 DEBUG Processing 68/677 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,244 DEBUG Processing 179/708 atomic regions from SNP 53457 to 54057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,279 DEBUG Processing 476/725 atomic regions from SNP 142607 to 143207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,288 DEBUG Processing 649/666 atomic regions from SNP 194517 to 195117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,321 DEBUG Processing 69/677 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,447 DEBUG Processing 180/708 atomic regions from SNP 53757 to 54357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,486 DEBUG Processing 477/725 atomic regions from SNP 142907 to 143507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,490 DEBUG Processing 650/666 atomic regions from SNP 194817 to 195417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,525 DEBUG Processing 70/677 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,644 DEBUG Processing 181/708 atomic regions from SNP 54057 to 54657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,690 DEBUG Processing 478/725 atomic regions from SNP 143207 to 143807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,719 DEBUG Processing 651/666 atomic regions from SNP 195117 to 195717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,724 DEBUG Processing 71/677 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,841 DEBUG Processing 182/708 atomic regions from SNP 54357 to 54957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,896 DEBUG Processing 479/725 atomic regions from SNP 143507 to 144107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,926 DEBUG Processing 72/677 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,947 DEBUG Processing 652/666 atomic regions from SNP 195417 to 196017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,034 DEBUG Processing 183/708 atomic regions from SNP 54657 to 55257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,099 DEBUG Processing 480/725 atomic regions from SNP 143807 to 144407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,126 DEBUG Processing 73/677 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,177 DEBUG Processing 653/666 atomic regions from SNP 195717 to 196317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,232 DEBUG Processing 184/708 atomic regions from SNP 54957 to 55557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,305 DEBUG Processing 481/725 atomic regions from SNP 144107 to 144707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,324 DEBUG Processing 74/677 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,390 DEBUG Processing 654/666 atomic regions from SNP 196017 to 196617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,428 DEBUG Processing 185/708 atomic regions from SNP 55257 to 55857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,510 DEBUG Processing 482/725 atomic regions from SNP 144407 to 145007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,521 DEBUG Processing 75/677 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,595 DEBUG Processing 655/666 atomic regions from SNP 196317 to 196917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,630 DEBUG Processing 186/708 atomic regions from SNP 55557 to 56157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,712 DEBUG Processing 483/725 atomic regions from SNP 144707 to 145307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,714 DEBUG Processing 76/677 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,795 DEBUG Processing 656/666 atomic regions from SNP 196617 to 197217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,831 DEBUG Processing 187/708 atomic regions from SNP 55857 to 56457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,907 DEBUG Processing 77/677 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,912 DEBUG Processing 484/725 atomic regions from SNP 145007 to 145607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,997 DEBUG Processing 657/666 atomic regions from SNP 196917 to 197517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,032 DEBUG Processing 188/708 atomic regions from SNP 56157 to 56757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,101 DEBUG Processing 78/677 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,114 DEBUG Processing 485/725 atomic regions from SNP 145307 to 145907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,193 DEBUG chr12 total SNP count: 199728 2025-01-31 09:54:07,193 DEBUG chr12 length: 120129022 2025-01-31 09:54:07,193 DEBUG ----------------------------------------- 2025-01-31 09:54:07,193 INFO Processing SNPs in chr12 2025-01-31 09:54:07,207 DEBUG Processing 658/666 atomic regions from SNP 197217 to 197817 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,234 DEBUG Processing 189/708 atomic regions from SNP 56457 to 57057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,298 DEBUG Processing 79/677 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,316 DEBUG Processing 486/725 atomic regions from SNP 145607 to 146207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,385 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 199728)] 2025-01-31 09:54:07,407 DEBUG Processing 659/666 atomic regions from SNP 197517 to 198117 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,432 DEBUG Processing 190/708 atomic regions from SNP 56757 to 57357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,491 DEBUG Processing 80/677 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,516 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:07,516 DEBUG Processing 487/725 atomic regions from SNP 145907 to 146507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,607 DEBUG Processing 660/666 atomic regions from SNP 197817 to 198417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,634 DEBUG Processing 191/708 atomic regions from SNP 57057 to 57657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,688 DEBUG Processing 81/677 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,720 DEBUG Processing 488/725 atomic regions from SNP 146207 to 146807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,807 DEBUG Processing 661/666 atomic regions from SNP 198117 to 198717 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,835 DEBUG Processing 192/708 atomic regions from SNP 57357 to 57957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,887 DEBUG Processing 82/677 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,923 DEBUG Processing 489/725 atomic regions from SNP 146507 to 147107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,006 DEBUG Processing 662/666 atomic regions from SNP 198417 to 199017 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,035 DEBUG Processing 193/708 atomic regions from SNP 57657 to 58257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,089 DEBUG Processing 83/677 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,124 DEBUG Processing 490/725 atomic regions from SNP 146807 to 147407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,205 DEBUG Processing 663/666 atomic regions from SNP 198717 to 199317 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,234 DEBUG Processing 194/708 atomic regions from SNP 57957 to 58557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,287 DEBUG Processing 84/677 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,324 DEBUG Processing 491/725 atomic regions from SNP 147107 to 147707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,403 DEBUG Processing 664/666 atomic regions from SNP 199017 to 199617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,435 DEBUG Processing 195/708 atomic regions from SNP 58257 to 58857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,484 DEBUG Processing 85/677 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,524 DEBUG Processing 492/725 atomic regions from SNP 147407 to 148007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,604 DEBUG Processing 665/666 atomic regions from SNP 199317 to 199917 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,636 DEBUG Processing 196/708 atomic regions from SNP 58557 to 59157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,683 DEBUG Processing 86/677 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,723 DEBUG Processing 493/725 atomic regions from SNP 147707 to 148307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,800 DEBUG Processing 666/666 atomic regions from SNP 199617 to 200217 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,841 DEBUG Processing 197/708 atomic regions from SNP 58857 to 59457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,896 DEBUG Processing 87/677 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,919 DEBUG Unique SNPs positions in subchromosome 2: 200218 2025-01-31 09:54:08,929 DEBUG Processing 494/725 atomic regions from SNP 148007 to 148607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,047 DEBUG Processing 198/708 atomic regions from SNP 59157 to 59757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,093 DEBUG Processing 88/677 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,128 DEBUG Processing 495/725 atomic regions from SNP 148307 to 148907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,241 DEBUG Processing 199/708 atomic regions from SNP 59457 to 60057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,286 DEBUG Processing 89/677 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,329 DEBUG Processing 496/725 atomic regions from SNP 148607 to 149207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,438 DEBUG Processing 200/708 atomic regions from SNP 59757 to 60357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,481 DEBUG Processing 90/677 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,527 DEBUG Processing 497/725 atomic regions from SNP 148907 to 149507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,636 DEBUG Processing 201/708 atomic regions from SNP 60057 to 60657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,673 DEBUG Processing 91/677 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,722 DEBUG Processing 498/725 atomic regions from SNP 149207 to 149807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,833 DEBUG Processing 202/708 atomic regions from SNP 60357 to 60957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,864 DEBUG Processing 92/677 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,921 DEBUG Processing 499/725 atomic regions from SNP 149507 to 150107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,032 DEBUG Processing 203/708 atomic regions from SNP 60657 to 61257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,053 DEBUG Processing 93/677 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,119 DEBUG Processing 500/725 atomic regions from SNP 149807 to 150407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,231 DEBUG Processing 204/708 atomic regions from SNP 60957 to 61557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,244 DEBUG Processing 94/677 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,317 DEBUG Processing 501/725 atomic regions from SNP 150107 to 150707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,429 DEBUG Processing 205/708 atomic regions from SNP 61257 to 61857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,439 DEBUG Processing 95/677 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,514 DEBUG Processing 502/725 atomic regions from SNP 150407 to 151007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,628 DEBUG Processing 206/708 atomic regions from SNP 61557 to 62157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,634 DEBUG Processing 96/677 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,711 DEBUG Processing 503/725 atomic regions from SNP 150707 to 151307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,830 DEBUG Processing 97/677 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,831 DEBUG Processing 207/708 atomic regions from SNP 61857 to 62457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,911 DEBUG Processing 504/725 atomic regions from SNP 151007 to 151607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,027 DEBUG Processing 98/677 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,034 DEBUG Processing 208/708 atomic regions from SNP 62157 to 62757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,110 DEBUG Processing 505/725 atomic regions from SNP 151307 to 151907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,222 DEBUG Processing 99/677 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,237 DEBUG Processing 209/708 atomic regions from SNP 62457 to 63057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,307 DEBUG Processing 506/725 atomic regions from SNP 151607 to 152207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,415 DEBUG Processing 100/677 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,436 DEBUG Processing 210/708 atomic regions from SNP 62757 to 63357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,508 DEBUG Processing 507/725 atomic regions from SNP 151907 to 152507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,604 DEBUG Processing 101/677 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,633 DEBUG Processing 211/708 atomic regions from SNP 63057 to 63657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,707 DEBUG Processing 508/725 atomic regions from SNP 152207 to 152807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,797 DEBUG Processing 102/677 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,827 DEBUG Processing 212/708 atomic regions from SNP 63357 to 63957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,908 DEBUG Processing 509/725 atomic regions from SNP 152507 to 153107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,014 DEBUG Processing 103/677 atomic regions from SNP 30702 to 31303 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,025 DEBUG Processing 213/708 atomic regions from SNP 63657 to 64257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,105 DEBUG Processing 510/725 atomic regions from SNP 152807 to 153407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,224 DEBUG Processing 214/708 atomic regions from SNP 63957 to 64557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,240 DEBUG Processing 104/677 atomic regions from SNP 31003 to 31604 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,300 DEBUG Processing 511/725 atomic regions from SNP 153107 to 153707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,424 DEBUG Processing 215/708 atomic regions from SNP 64257 to 64857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,458 DEBUG Processing 105/677 atomic regions from SNP 31304 to 31905 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,498 DEBUG Processing 512/725 atomic regions from SNP 153407 to 154007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,626 DEBUG Processing 216/708 atomic regions from SNP 64557 to 65157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,671 DEBUG Processing 106/677 atomic regions from SNP 31605 to 32206 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,697 DEBUG Processing 513/725 atomic regions from SNP 153707 to 154307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,827 DEBUG Processing 217/708 atomic regions from SNP 64857 to 65457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,893 DEBUG Processing 514/725 atomic regions from SNP 154007 to 154607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,894 DEBUG Processing 107/677 atomic regions from SNP 31906 to 32507 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,025 DEBUG Processing 218/708 atomic regions from SNP 65157 to 65757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,088 DEBUG Processing 515/725 atomic regions from SNP 154307 to 154907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,113 DEBUG Processing 108/677 atomic regions from SNP 32207 to 32808 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,225 DEBUG Processing 219/708 atomic regions from SNP 65457 to 66057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,293 DEBUG Processing 516/725 atomic regions from SNP 154607 to 155207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,324 DEBUG Processing 109/677 atomic regions from SNP 32508 to 33109 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,426 DEBUG Processing 220/708 atomic regions from SNP 65757 to 66357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,495 DEBUG Processing 517/725 atomic regions from SNP 154907 to 155507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,516 DEBUG Processing 110/677 atomic regions from SNP 32809 to 33410 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,620 DEBUG Processing 221/708 atomic regions from SNP 66057 to 66657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,699 DEBUG Processing 518/725 atomic regions from SNP 155207 to 155807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,712 DEBUG Processing 111/677 atomic regions from SNP 33110 to 33711 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,814 DEBUG Processing 222/708 atomic regions from SNP 66357 to 66957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,910 DEBUG Processing 519/725 atomic regions from SNP 155507 to 156107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,913 DEBUG Processing 112/677 atomic regions from SNP 33411 to 34012 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,008 DEBUG Processing 223/708 atomic regions from SNP 66657 to 67257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,111 DEBUG Processing 113/677 atomic regions from SNP 33712 to 34313 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,141 DEBUG Processing 520/725 atomic regions from SNP 155807 to 156407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,208 DEBUG Processing 224/708 atomic regions from SNP 66957 to 67557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,330 DEBUG Processing 114/677 atomic regions from SNP 34013 to 34614 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,346 DEBUG Processing 521/725 atomic regions from SNP 156107 to 156707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,407 DEBUG Processing 225/708 atomic regions from SNP 67257 to 67857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,553 DEBUG Processing 522/725 atomic regions from SNP 156407 to 157007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,554 DEBUG Processing 115/677 atomic regions from SNP 34314 to 34915 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,608 DEBUG Processing 226/708 atomic regions from SNP 67557 to 68157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,762 DEBUG Processing 523/725 atomic regions from SNP 156707 to 157307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,783 DEBUG Processing 116/677 atomic regions from SNP 34615 to 35216 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,810 DEBUG Processing 227/708 atomic regions from SNP 67857 to 68457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,969 DEBUG Processing 524/725 atomic regions from SNP 157007 to 157607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,012 DEBUG Processing 117/677 atomic regions from SNP 34916 to 35517 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,015 DEBUG Processing 228/708 atomic regions from SNP 68157 to 68757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,175 DEBUG Processing 525/725 atomic regions from SNP 157307 to 157907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,218 DEBUG Processing 229/708 atomic regions from SNP 68457 to 69057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,222 DEBUG Processing 118/677 atomic regions from SNP 35217 to 35818 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,382 DEBUG Processing 526/725 atomic regions from SNP 157607 to 158207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,420 DEBUG Processing 230/708 atomic regions from SNP 68757 to 69357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,427 DEBUG Processing 119/677 atomic regions from SNP 35518 to 36119 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,589 DEBUG Processing 527/725 atomic regions from SNP 157907 to 158507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,622 DEBUG Processing 231/708 atomic regions from SNP 69057 to 69657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,651 DEBUG Processing 120/677 atomic regions from SNP 35819 to 36420 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,795 DEBUG Processing 528/725 atomic regions from SNP 158207 to 158807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,826 DEBUG Processing 232/708 atomic regions from SNP 69357 to 69957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,865 DEBUG Processing 121/677 atomic regions from SNP 36120 to 36721 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,999 DEBUG Processing 529/725 atomic regions from SNP 158507 to 159107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,027 DEBUG Processing 233/708 atomic regions from SNP 69657 to 70257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,094 DEBUG Processing 122/677 atomic regions from SNP 36421 to 37022 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,207 DEBUG Processing 530/725 atomic regions from SNP 158807 to 159407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,229 DEBUG Processing 234/708 atomic regions from SNP 69957 to 70557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,325 DEBUG Processing 123/677 atomic regions from SNP 36722 to 37323 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,415 DEBUG Processing 531/725 atomic regions from SNP 159107 to 159707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,429 DEBUG Processing 235/708 atomic regions from SNP 70257 to 70857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,548 DEBUG Processing 124/677 atomic regions from SNP 37023 to 37624 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,620 DEBUG Processing 532/725 atomic regions from SNP 159407 to 160007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,629 DEBUG Processing 236/708 atomic regions from SNP 70557 to 71157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,763 DEBUG Processing 125/677 atomic regions from SNP 37324 to 37925 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,829 DEBUG Processing 533/725 atomic regions from SNP 159707 to 160307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,832 DEBUG Processing 237/708 atomic regions from SNP 70857 to 71457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,960 DEBUG Processing 126/677 atomic regions from SNP 37625 to 38226 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,032 DEBUG Processing 238/708 atomic regions from SNP 71157 to 71757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,035 DEBUG Processing 534/725 atomic regions from SNP 160007 to 160607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,158 DEBUG Processing 127/677 atomic regions from SNP 37926 to 38527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,238 DEBUG Processing 239/708 atomic regions from SNP 71457 to 72057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,239 DEBUG Processing 535/725 atomic regions from SNP 160307 to 160907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,358 DEBUG Processing 128/677 atomic regions from SNP 38227 to 38828 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,440 DEBUG Processing 240/708 atomic regions from SNP 71757 to 72357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,442 DEBUG Processing 536/725 atomic regions from SNP 160607 to 161207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,474 DEBUG Subchromosome time: 172.50597634108271, subchromosome SNPs: 200218 2025-01-31 09:54:17,474 DEBUG Estimated BADs: [0.34, 1.69, 6.75, 1.69, 5.06, 3.38, 1.69, 0.56, 1.69, 0.84, 3.38, 13.50, 1.69, 8.44, 3.38, 0.84, 3.38, 0.42, 1.69, 0.34, 0.84, 0.42, 0.84, 3.38, 0.56] SNP counts: [179, 21133, 4140, 14015, 4003, 6109, 3901, 4796, 11410, 2511, 1940, 662, 2452, 2354, 27595, 2986, 13510, 9884, 3001, 17112, 15588, 11712, 13297, 4692, 1415] SNP IDs counts: [179, 21133, 4140, 14015, 4003, 6109, 3901, 4796, 11410, 2511, 1940, 662, 2452, 2354, 27595, 2986, 13510, 9884, 3001, 17112, 15588, 11712, 13297, 4692, 1415] Critical gap: 621197bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.13Mbp[0.71Mbp], 19.69Mbp, 21.86Mbp, 29.84Mbp, 31.95Mbp, 35.21Mbp, 37.43Mbp, 40.26Mbp, 49.24Mbp, 50.78Mbp, 51.98Mbp, 52.33Mbp, 54.41Mbp, 55.66Mbp, 70.98Mbp, 72.66Mbp, 80.05Mbp, 86.06Mbp, 87.72Mbp, 97.90Mbp, 106.71Mbp, 113.74Mbp, 121.25Mbp, 123.90Mbp, 124.90Mbp] 2025-01-31 09:54:17,474 DEBUG chr14 time: 172.50659433600958 s 2025-01-31 09:54:17,558 DEBUG Processing 129/677 atomic regions from SNP 38528 to 39129 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,593 DEBUG chr14: Fitting background model for 25 segments 2025-01-31 09:54:17,641 DEBUG Processing 241/708 atomic regions from SNP 72057 to 72657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,652 DEBUG Processing 537/725 atomic regions from SNP 160907 to 161507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,757 DEBUG Processing 130/677 atomic regions from SNP 38829 to 39430 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,854 DEBUG Processing 242/708 atomic regions from SNP 72357 to 72957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,869 DEBUG Processing 538/725 atomic regions from SNP 161207 to 161807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,967 DEBUG Processing 131/677 atomic regions from SNP 39130 to 39731 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,065 DEBUG Processing 243/708 atomic regions from SNP 72657 to 73257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,079 DEBUG Processing 539/725 atomic regions from SNP 161507 to 162107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,164 DEBUG Processing 132/677 atomic regions from SNP 39431 to 40032 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,268 DEBUG Processing 244/708 atomic regions from SNP 72957 to 73557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,287 DEBUG Processing 540/725 atomic regions from SNP 161807 to 162407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,361 DEBUG Processing 133/677 atomic regions from SNP 39732 to 40333 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,470 DEBUG Processing 245/708 atomic regions from SNP 73257 to 73857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,494 DEBUG Processing 541/725 atomic regions from SNP 162107 to 162707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,557 DEBUG Processing 134/677 atomic regions from SNP 40033 to 40634 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,671 DEBUG Processing 246/708 atomic regions from SNP 73557 to 74157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,697 DEBUG Processing 542/725 atomic regions from SNP 162407 to 163007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,758 DEBUG Processing 135/677 atomic regions from SNP 40334 to 40935 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,878 DEBUG Processing 247/708 atomic regions from SNP 73857 to 74457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,905 DEBUG Processing 543/725 atomic regions from SNP 162707 to 163307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,961 DEBUG Processing 136/677 atomic regions from SNP 40635 to 41236 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,092 DEBUG Processing 248/708 atomic regions from SNP 74157 to 74757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,126 DEBUG Processing 544/725 atomic regions from SNP 163007 to 163607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,164 DEBUG Processing 137/677 atomic regions from SNP 40936 to 41537 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,294 DEBUG Processing 249/708 atomic regions from SNP 74457 to 75057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,354 DEBUG Processing 545/725 atomic regions from SNP 163307 to 163907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,365 DEBUG Processing 138/677 atomic regions from SNP 41237 to 41838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,498 DEBUG Processing 250/708 atomic regions from SNP 74757 to 75357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,564 DEBUG Processing 546/725 atomic regions from SNP 163607 to 164207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,569 DEBUG Processing 139/677 atomic regions from SNP 41538 to 42139 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,703 DEBUG Processing 251/708 atomic regions from SNP 75057 to 75657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,777 DEBUG Processing 140/677 atomic regions from SNP 41839 to 42440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,781 DEBUG Processing 547/725 atomic regions from SNP 163907 to 164507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,913 DEBUG Processing 252/708 atomic regions from SNP 75357 to 75957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,989 DEBUG Processing 141/677 atomic regions from SNP 42140 to 42741 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,003 DEBUG Processing 548/725 atomic regions from SNP 164207 to 164807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,115 DEBUG Processing 253/708 atomic regions from SNP 75657 to 76257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,198 DEBUG Processing 142/677 atomic regions from SNP 42441 to 43042 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,220 DEBUG Processing 549/725 atomic regions from SNP 164507 to 165107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,317 DEBUG Processing 254/708 atomic regions from SNP 75957 to 76557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,406 DEBUG Processing 143/677 atomic regions from SNP 42742 to 43343 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,452 DEBUG Processing 550/725 atomic regions from SNP 164807 to 165407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,518 DEBUG Processing 255/708 atomic regions from SNP 76257 to 76857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,613 DEBUG Processing 144/677 atomic regions from SNP 43043 to 43644 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,690 DEBUG Processing 551/725 atomic regions from SNP 165107 to 165707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,723 DEBUG Processing 256/708 atomic regions from SNP 76557 to 77157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,824 DEBUG Processing 145/677 atomic regions from SNP 43344 to 43945 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,901 DEBUG Processing 552/725 atomic regions from SNP 165407 to 166007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,926 DEBUG Processing 257/708 atomic regions from SNP 76857 to 77457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,039 DEBUG Processing 146/677 atomic regions from SNP 43645 to 44246 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,112 DEBUG Processing 553/725 atomic regions from SNP 165707 to 166307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,128 DEBUG Processing 258/708 atomic regions from SNP 77157 to 77757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,238 DEBUG Processing 147/677 atomic regions from SNP 43946 to 44547 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,330 DEBUG Processing 554/725 atomic regions from SNP 166007 to 166607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,333 DEBUG Processing 259/708 atomic regions from SNP 77457 to 78057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,436 DEBUG Processing 148/677 atomic regions from SNP 44247 to 44848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,535 DEBUG Processing 260/708 atomic regions from SNP 77757 to 78357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,555 DEBUG Processing 555/725 atomic regions from SNP 166307 to 166907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,635 DEBUG Processing 149/677 atomic regions from SNP 44548 to 45149 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,735 DEBUG Processing 261/708 atomic regions from SNP 78057 to 78657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,778 DEBUG Processing 556/725 atomic regions from SNP 166607 to 167207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,838 DEBUG Processing 150/677 atomic regions from SNP 44849 to 45450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,934 DEBUG Processing 262/708 atomic regions from SNP 78357 to 78957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,996 DEBUG Processing 557/725 atomic regions from SNP 166907 to 167507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,042 DEBUG Processing 151/677 atomic regions from SNP 45150 to 45751 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,131 DEBUG Processing 263/708 atomic regions from SNP 78657 to 79257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,233 DEBUG Processing 558/725 atomic regions from SNP 167207 to 167807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,254 DEBUG Processing 152/677 atomic regions from SNP 45451 to 46052 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,360 DEBUG Processing 264/708 atomic regions from SNP 78957 to 79557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,457 DEBUG Processing 559/725 atomic regions from SNP 167507 to 168107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,472 DEBUG Processing 153/677 atomic regions from SNP 45752 to 46353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,589 DEBUG Processing 265/708 atomic regions from SNP 79257 to 79857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,673 DEBUG Processing 560/725 atomic regions from SNP 167807 to 168407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,705 DEBUG Processing 154/677 atomic regions from SNP 46053 to 46654 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,790 DEBUG Processing 266/708 atomic regions from SNP 79557 to 80157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,888 DEBUG Processing 561/725 atomic regions from SNP 168107 to 168707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,920 DEBUG Processing 155/677 atomic regions from SNP 46354 to 46955 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,989 DEBUG Processing 267/708 atomic regions from SNP 79857 to 80457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,099 DEBUG Processing 562/725 atomic regions from SNP 168407 to 169007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,140 DEBUG Processing 156/677 atomic regions from SNP 46655 to 47256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,189 DEBUG Processing 268/708 atomic regions from SNP 80157 to 80757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,312 DEBUG Processing 563/725 atomic regions from SNP 168707 to 169307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,348 DEBUG Processing 157/677 atomic regions from SNP 46956 to 47557 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,398 DEBUG Processing 269/708 atomic regions from SNP 80457 to 81057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,520 DEBUG Processing 564/725 atomic regions from SNP 169007 to 169607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,548 DEBUG Processing 158/677 atomic regions from SNP 47257 to 47858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,602 DEBUG Processing 270/708 atomic regions from SNP 80757 to 81357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,725 DEBUG Processing 565/725 atomic regions from SNP 169307 to 169907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,754 DEBUG Processing 159/677 atomic regions from SNP 47558 to 48159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,806 DEBUG Processing 271/708 atomic regions from SNP 81057 to 81657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,935 DEBUG Processing 566/725 atomic regions from SNP 169607 to 170207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,980 DEBUG Processing 160/677 atomic regions from SNP 47859 to 48460 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,039 DEBUG Processing 272/708 atomic regions from SNP 81357 to 81957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,143 DEBUG Processing 567/725 atomic regions from SNP 169907 to 170507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,214 DEBUG Processing 161/677 atomic regions from SNP 48160 to 48761 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,270 DEBUG Processing 273/708 atomic regions from SNP 81657 to 82257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,350 DEBUG Processing 568/725 atomic regions from SNP 170207 to 170807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,415 DEBUG Processing 162/677 atomic regions from SNP 48461 to 49062 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,474 DEBUG Processing 274/708 atomic regions from SNP 81957 to 82557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,561 DEBUG Processing 569/725 atomic regions from SNP 170507 to 171107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,616 DEBUG Processing 163/677 atomic regions from SNP 48762 to 49363 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,676 DEBUG Processing 275/708 atomic regions from SNP 82257 to 82857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,767 DEBUG Processing 570/725 atomic regions from SNP 170807 to 171407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,818 DEBUG Processing 164/677 atomic regions from SNP 49063 to 49664 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,883 DEBUG Processing 276/708 atomic regions from SNP 82557 to 83157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,976 DEBUG Processing 571/725 atomic regions from SNP 171107 to 171707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,031 DEBUG Processing 165/677 atomic regions from SNP 49364 to 49965 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,087 DEBUG Processing 277/708 atomic regions from SNP 82857 to 83457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,184 DEBUG Processing 572/725 atomic regions from SNP 171407 to 172007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,236 DEBUG Processing 166/677 atomic regions from SNP 49665 to 50266 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,292 DEBUG Processing 278/708 atomic regions from SNP 83157 to 83757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,407 DEBUG Processing 573/725 atomic regions from SNP 171707 to 172307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,436 DEBUG Processing 167/677 atomic regions from SNP 49966 to 50567 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,498 DEBUG Processing 279/708 atomic regions from SNP 83457 to 84057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,621 DEBUG Processing 574/725 atomic regions from SNP 172007 to 172607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,632 DEBUG Processing 168/677 atomic regions from SNP 50267 to 50868 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,728 DEBUG Processing 280/708 atomic regions from SNP 83757 to 84357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,828 DEBUG Processing 169/677 atomic regions from SNP 50568 to 51169 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,835 DEBUG Processing 575/725 atomic regions from SNP 172307 to 172907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,963 DEBUG Processing 281/708 atomic regions from SNP 84057 to 84657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,027 DEBUG Processing 170/677 atomic regions from SNP 50869 to 51470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,044 DEBUG Processing 576/725 atomic regions from SNP 172607 to 173207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,192 DEBUG Processing 282/708 atomic regions from SNP 84357 to 84957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,231 DEBUG Processing 171/677 atomic regions from SNP 51170 to 51771 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,250 DEBUG Processing 577/725 atomic regions from SNP 172907 to 173507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,421 DEBUG Processing 283/708 atomic regions from SNP 84657 to 85257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,446 DEBUG Processing 172/677 atomic regions from SNP 51471 to 52072 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,455 DEBUG Processing 578/725 atomic regions from SNP 173207 to 173807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,636 DEBUG Processing 284/708 atomic regions from SNP 84957 to 85557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,657 DEBUG Processing 173/677 atomic regions from SNP 51772 to 52373 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,664 DEBUG Processing 579/725 atomic regions from SNP 173507 to 174107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,859 DEBUG Processing 174/677 atomic regions from SNP 52073 to 52674 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,864 DEBUG Processing 285/708 atomic regions from SNP 85257 to 85857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,875 DEBUG Processing 580/725 atomic regions from SNP 173807 to 174407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,064 DEBUG Processing 175/677 atomic regions from SNP 52374 to 52975 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,072 DEBUG Processing 286/708 atomic regions from SNP 85557 to 86157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,101 DEBUG Processing 581/725 atomic regions from SNP 174107 to 174707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,264 DEBUG Processing 176/677 atomic regions from SNP 52675 to 53276 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,275 DEBUG Processing 287/708 atomic regions from SNP 85857 to 86457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,330 DEBUG Processing 582/725 atomic regions from SNP 174407 to 175007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,477 DEBUG Processing 288/708 atomic regions from SNP 86157 to 86757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,489 DEBUG Processing 177/677 atomic regions from SNP 52976 to 53577 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,539 DEBUG Processing 583/725 atomic regions from SNP 174707 to 175307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,679 DEBUG Processing 289/708 atomic regions from SNP 86457 to 87057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,718 DEBUG Processing 178/677 atomic regions from SNP 53277 to 53878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,755 DEBUG Processing 584/725 atomic regions from SNP 175007 to 175607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,880 DEBUG Processing 290/708 atomic regions from SNP 86757 to 87357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,947 DEBUG Processing 179/677 atomic regions from SNP 53578 to 54178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,990 DEBUG Processing 585/725 atomic regions from SNP 175307 to 175907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,095 DEBUG Processing 291/708 atomic regions from SNP 87057 to 87657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,161 DEBUG Processing 180/677 atomic regions from SNP 53878 to 54478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,204 DEBUG Processing 586/725 atomic regions from SNP 175607 to 176207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,317 DEBUG Processing 292/708 atomic regions from SNP 87357 to 87957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,362 DEBUG Processing 181/677 atomic regions from SNP 54178 to 54778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,410 DEBUG Processing 587/725 atomic regions from SNP 175907 to 176507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,534 DEBUG Processing 293/708 atomic regions from SNP 87657 to 88257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,565 DEBUG Processing 182/677 atomic regions from SNP 54478 to 55078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,616 DEBUG Processing 588/725 atomic regions from SNP 176207 to 176807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,744 DEBUG Processing 294/708 atomic regions from SNP 87957 to 88557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,770 DEBUG Processing 183/677 atomic regions from SNP 54778 to 55378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,824 DEBUG Processing 589/725 atomic regions from SNP 176507 to 177107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,943 DEBUG Processing 295/708 atomic regions from SNP 88257 to 88857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,968 DEBUG Processing 184/677 atomic regions from SNP 55078 to 55678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,030 DEBUG Processing 590/725 atomic regions from SNP 176807 to 177407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,142 DEBUG Processing 296/708 atomic regions from SNP 88557 to 89157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,167 DEBUG Processing 185/677 atomic regions from SNP 55378 to 55978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,235 DEBUG Processing 591/725 atomic regions from SNP 177107 to 177707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,341 DEBUG Processing 297/708 atomic regions from SNP 88857 to 89457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,363 DEBUG Processing 186/677 atomic regions from SNP 55678 to 56278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,437 DEBUG Processing 592/725 atomic regions from SNP 177407 to 178007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,542 DEBUG Processing 298/708 atomic regions from SNP 89157 to 89757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,581 DEBUG Processing 187/677 atomic regions from SNP 55978 to 56578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,639 DEBUG Processing 593/725 atomic regions from SNP 177707 to 178307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,744 DEBUG Processing 299/708 atomic regions from SNP 89457 to 90057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,803 DEBUG Processing 188/677 atomic regions from SNP 56278 to 56878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,854 DEBUG Processing 594/725 atomic regions from SNP 178007 to 178607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,968 DEBUG Processing 300/708 atomic regions from SNP 89757 to 90357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,993 DEBUG Segmenting atomic regions: 2025-01-31 09:54:30,016 DEBUG Processing 189/677 atomic regions from SNP 56578 to 57178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,065 DEBUG Processing 595/725 atomic regions from SNP 178307 to 178907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,079 DEBUG Processing 1/664 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,191 DEBUG Processing 301/708 atomic regions from SNP 90057 to 90657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,236 DEBUG Processing 190/677 atomic regions from SNP 56878 to 57478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,275 DEBUG Processing 596/725 atomic regions from SNP 178607 to 179207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,305 DEBUG Processing 2/664 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,394 DEBUG Processing 302/708 atomic regions from SNP 90357 to 90957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,437 DEBUG Processing 191/677 atomic regions from SNP 57178 to 57778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,489 DEBUG Processing 597/725 atomic regions from SNP 178907 to 179507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,528 DEBUG Processing 3/664 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,600 DEBUG Processing 303/708 atomic regions from SNP 90657 to 91257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,640 DEBUG Processing 192/677 atomic regions from SNP 57478 to 58078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,716 DEBUG Processing 598/725 atomic regions from SNP 179207 to 179807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,751 DEBUG Processing 4/664 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,834 DEBUG Processing 304/708 atomic regions from SNP 90957 to 91557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,846 DEBUG Processing 193/677 atomic regions from SNP 57778 to 58378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,942 DEBUG Processing 599/725 atomic regions from SNP 179507 to 180107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,972 DEBUG Processing 5/664 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,046 DEBUG Processing 305/708 atomic regions from SNP 91257 to 91857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,048 DEBUG Processing 194/677 atomic regions from SNP 58078 to 58678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,144 DEBUG Processing 600/725 atomic regions from SNP 179807 to 180407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,203 DEBUG Processing 6/664 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,249 DEBUG Processing 195/677 atomic regions from SNP 58378 to 58978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,251 DEBUG Processing 306/708 atomic regions from SNP 91557 to 92157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,352 DEBUG Processing 601/725 atomic regions from SNP 180107 to 180707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,437 DEBUG Processing 7/664 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,454 DEBUG Processing 196/677 atomic regions from SNP 58678 to 59278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,459 DEBUG Processing 307/708 atomic regions from SNP 91857 to 92457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,556 DEBUG Processing 602/725 atomic regions from SNP 180407 to 181007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,657 DEBUG Processing 8/664 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,658 DEBUG Processing 197/677 atomic regions from SNP 58978 to 59578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,664 DEBUG Processing 308/708 atomic regions from SNP 92157 to 92757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,760 DEBUG Processing 603/725 atomic regions from SNP 180707 to 181307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,862 DEBUG Processing 198/677 atomic regions from SNP 59278 to 59878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,866 DEBUG Processing 9/664 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,871 DEBUG Processing 309/708 atomic regions from SNP 92457 to 93057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,967 DEBUG Processing 604/725 atomic regions from SNP 181007 to 181607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,069 DEBUG Processing 199/677 atomic regions from SNP 59578 to 60178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,077 DEBUG Processing 310/708 atomic regions from SNP 92757 to 93357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,082 DEBUG Processing 10/664 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,174 DEBUG Processing 605/725 atomic regions from SNP 181307 to 181907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,279 DEBUG Processing 311/708 atomic regions from SNP 93057 to 93657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,296 DEBUG Processing 200/677 atomic regions from SNP 59878 to 60478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,309 DEBUG Processing 11/664 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,384 DEBUG Processing 606/725 atomic regions from SNP 181607 to 182207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,482 DEBUG Processing 312/708 atomic regions from SNP 93357 to 93957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,534 DEBUG Processing 201/677 atomic regions from SNP 60178 to 60778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,550 DEBUG Processing 12/664 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,594 DEBUG Processing 607/725 atomic regions from SNP 181907 to 182507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,681 DEBUG Processing 313/708 atomic regions from SNP 93657 to 94257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,739 DEBUG Processing 202/677 atomic regions from SNP 60478 to 61078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,761 DEBUG Processing 13/664 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,804 DEBUG Processing 608/725 atomic regions from SNP 182207 to 182807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,882 DEBUG Processing 314/708 atomic regions from SNP 93957 to 94557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,939 DEBUG Processing 203/677 atomic regions from SNP 60778 to 61378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,972 DEBUG Processing 14/664 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,011 DEBUG Processing 609/725 atomic regions from SNP 182507 to 183107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,088 DEBUG Processing 315/708 atomic regions from SNP 94257 to 94857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,137 DEBUG Processing 204/677 atomic regions from SNP 61078 to 61678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,186 DEBUG Processing 15/664 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,211 DEBUG Processing 610/725 atomic regions from SNP 182807 to 183407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,287 DEBUG Processing 316/708 atomic regions from SNP 94557 to 95157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,354 DEBUG Processing 205/677 atomic regions from SNP 61378 to 61978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,390 DEBUG Processing 16/664 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,411 DEBUG Processing 611/725 atomic regions from SNP 183107 to 183707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,498 DEBUG Processing 317/708 atomic regions from SNP 94857 to 95457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,568 DEBUG Processing 206/677 atomic regions from SNP 61678 to 62278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,596 DEBUG Processing 17/664 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,624 DEBUG Processing 612/725 atomic regions from SNP 183407 to 184007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,703 DEBUG Processing 318/708 atomic regions from SNP 95157 to 95757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,771 DEBUG Processing 207/677 atomic regions from SNP 61978 to 62578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,810 DEBUG Processing 18/664 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,842 DEBUG Processing 613/725 atomic regions from SNP 183707 to 184307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,922 DEBUG Processing 319/708 atomic regions from SNP 95457 to 96057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,970 DEBUG Processing 208/677 atomic regions from SNP 62278 to 62878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,020 DEBUG Processing 19/664 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,048 DEBUG Processing 614/725 atomic regions from SNP 184007 to 184607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,140 DEBUG Processing 320/708 atomic regions from SNP 95757 to 96357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,170 DEBUG Processing 209/677 atomic regions from SNP 62578 to 63178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,228 DEBUG Processing 20/664 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,256 DEBUG Processing 615/725 atomic regions from SNP 184307 to 184907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,369 DEBUG Processing 210/677 atomic regions from SNP 62878 to 63478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,371 DEBUG Processing 321/708 atomic regions from SNP 96057 to 96657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,432 DEBUG Processing 21/664 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,481 DEBUG Processing 616/725 atomic regions from SNP 184607 to 185207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,565 DEBUG Processing 211/677 atomic regions from SNP 63178 to 63778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,582 DEBUG Processing 322/708 atomic regions from SNP 96357 to 96957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,635 DEBUG Processing 22/664 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,706 DEBUG Processing 617/725 atomic regions from SNP 184907 to 185507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,758 DEBUG Processing 212/677 atomic regions from SNP 63478 to 64078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,779 DEBUG Processing 323/708 atomic regions from SNP 96657 to 97257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,843 DEBUG Processing 23/664 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,944 DEBUG Processing 618/725 atomic regions from SNP 185207 to 185807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,955 DEBUG Processing 213/677 atomic regions from SNP 63778 to 64378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,987 DEBUG Processing 324/708 atomic regions from SNP 96957 to 97557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,050 DEBUG Processing 24/664 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,152 DEBUG Processing 214/677 atomic regions from SNP 64078 to 64678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,159 DEBUG Processing 619/725 atomic regions from SNP 185507 to 186107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,215 DEBUG Processing 325/708 atomic regions from SNP 97257 to 97857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,253 DEBUG Processing 25/664 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,350 DEBUG Processing 215/677 atomic regions from SNP 64378 to 64978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,368 DEBUG Processing 620/725 atomic regions from SNP 185807 to 186407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,444 DEBUG Processing 326/708 atomic regions from SNP 97557 to 98157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,456 DEBUG Processing 26/664 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,549 DEBUG Processing 216/677 atomic regions from SNP 64678 to 65278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,594 DEBUG Processing 621/725 atomic regions from SNP 186107 to 186707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,659 DEBUG Processing 27/664 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,666 DEBUG Processing 327/708 atomic regions from SNP 97857 to 98457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,746 DEBUG Processing 217/677 atomic regions from SNP 64978 to 65578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,799 DEBUG Processing 622/725 atomic regions from SNP 186407 to 187007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,863 DEBUG Processing 28/664 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,869 DEBUG Processing 328/708 atomic regions from SNP 98157 to 98757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,874 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:54:35,943 DEBUG Processing 218/677 atomic regions from SNP 65278 to 65878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,024 DEBUG Processing 623/725 atomic regions from SNP 186707 to 187307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,070 DEBUG Processing 29/664 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,078 DEBUG Processing 329/708 atomic regions from SNP 98457 to 99057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,166 DEBUG Processing 219/677 atomic regions from SNP 65578 to 66178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,267 DEBUG Processing 624/725 atomic regions from SNP 187007 to 187607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,280 DEBUG Processing 30/664 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,306 DEBUG Processing 330/708 atomic regions from SNP 98757 to 99357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,386 DEBUG Processing 220/677 atomic regions from SNP 65878 to 66478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,488 DEBUG Processing 31/664 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,508 DEBUG Processing 625/725 atomic regions from SNP 187307 to 187907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,535 DEBUG Processing 331/708 atomic regions from SNP 99057 to 99657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,609 DEBUG Processing 221/677 atomic regions from SNP 66178 to 66778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,695 DEBUG Processing 32/664 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,746 DEBUG Processing 626/725 atomic regions from SNP 187607 to 188207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,770 DEBUG Processing 332/708 atomic regions from SNP 99357 to 99957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,809 DEBUG Processing 222/677 atomic regions from SNP 66478 to 67078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,926 DEBUG Processing 33/664 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,990 DEBUG Processing 627/725 atomic regions from SNP 187907 to 188507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,009 DEBUG Processing 333/708 atomic regions from SNP 99657 to 100257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,013 DEBUG Processing 223/677 atomic regions from SNP 66778 to 67378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,146 DEBUG Processing 34/664 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,219 DEBUG Processing 224/677 atomic regions from SNP 67078 to 67678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,229 DEBUG Processing 334/708 atomic regions from SNP 99957 to 100557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,237 DEBUG Processing 628/725 atomic regions from SNP 188207 to 188807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,351 DEBUG Processing 35/664 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,418 DEBUG Processing 225/677 atomic regions from SNP 67378 to 67978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,453 DEBUG Processing 335/708 atomic regions from SNP 100257 to 100857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,479 DEBUG Processing 629/725 atomic regions from SNP 188507 to 189107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,553 DEBUG Processing 36/664 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,616 DEBUG Processing 226/677 atomic regions from SNP 67678 to 68278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,677 DEBUG Processing 336/708 atomic regions from SNP 100557 to 101157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,725 DEBUG Processing 630/725 atomic regions from SNP 188807 to 189407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,757 DEBUG Processing 37/664 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,815 DEBUG Processing 227/677 atomic regions from SNP 67978 to 68578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,904 DEBUG Processing 337/708 atomic regions from SNP 100857 to 101457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,967 DEBUG Processing 38/664 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,978 DEBUG Processing 631/725 atomic regions from SNP 189107 to 189707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,014 DEBUG Processing 228/677 atomic regions from SNP 68278 to 68878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,108 DEBUG Processing 338/708 atomic regions from SNP 101157 to 101757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,172 DEBUG Processing 39/664 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,220 DEBUG Processing 229/677 atomic regions from SNP 68578 to 69178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,229 DEBUG Processing 632/725 atomic regions from SNP 189407 to 190007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,321 DEBUG Processing 339/708 atomic regions from SNP 101457 to 102057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,377 DEBUG Processing 40/664 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,421 DEBUG Processing 230/677 atomic regions from SNP 68878 to 69478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,471 DEBUG Processing 633/725 atomic regions from SNP 189707 to 190307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,522 DEBUG Processing 340/708 atomic regions from SNP 101757 to 102357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,576 DEBUG Processing 41/664 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,617 DEBUG Processing 231/677 atomic regions from SNP 69178 to 69778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,713 DEBUG Processing 634/725 atomic regions from SNP 190007 to 190607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,724 DEBUG Processing 341/708 atomic regions from SNP 102057 to 102657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,773 DEBUG Processing 42/664 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,810 DEBUG Processing 232/677 atomic regions from SNP 69478 to 70078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,926 DEBUG Processing 635/725 atomic regions from SNP 190307 to 190907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,926 DEBUG Processing 342/708 atomic regions from SNP 102357 to 102957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,970 DEBUG Processing 43/664 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,016 DEBUG Processing 233/677 atomic regions from SNP 69778 to 70378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,132 DEBUG Processing 343/708 atomic regions from SNP 102657 to 103257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,133 DEBUG Processing 636/725 atomic regions from SNP 190607 to 191207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,166 DEBUG Processing 44/664 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,215 DEBUG Processing 234/677 atomic regions from SNP 70078 to 70678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,334 DEBUG Processing 344/708 atomic regions from SNP 102957 to 103557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,337 DEBUG Processing 637/725 atomic regions from SNP 190907 to 191507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,360 DEBUG Processing 45/664 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,429 DEBUG Processing 235/677 atomic regions from SNP 70378 to 70978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,533 DEBUG Processing 345/708 atomic regions from SNP 103257 to 103857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,557 DEBUG Processing 638/725 atomic regions from SNP 191207 to 191807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,557 DEBUG Processing 46/664 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,637 DEBUG Processing 236/677 atomic regions from SNP 70678 to 71278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,741 DEBUG Processing 346/708 atomic regions from SNP 103557 to 104157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,752 DEBUG Processing 47/664 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,780 DEBUG Processing 639/725 atomic regions from SNP 191507 to 192107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,830 DEBUG Processing 237/677 atomic regions from SNP 70978 to 71578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,959 DEBUG Processing 48/664 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,978 DEBUG Processing 347/708 atomic regions from SNP 103857 to 104457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,009 DEBUG Processing 640/725 atomic regions from SNP 191807 to 192407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,028 DEBUG Processing 238/677 atomic regions from SNP 71278 to 71878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,165 DEBUG Processing 49/664 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,184 DEBUG Processing 348/708 atomic regions from SNP 104157 to 104757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,227 DEBUG Processing 239/677 atomic regions from SNP 71578 to 72178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,241 DEBUG Processing 641/725 atomic regions from SNP 192107 to 192707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,371 DEBUG Processing 50/664 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,385 DEBUG Processing 349/708 atomic regions from SNP 104457 to 105057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,429 DEBUG Processing 240/677 atomic regions from SNP 71878 to 72478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,476 DEBUG Processing 642/725 atomic regions from SNP 192407 to 193007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,576 DEBUG Processing 51/664 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,584 DEBUG Processing 350/708 atomic regions from SNP 104757 to 105357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,626 DEBUG Processing 241/677 atomic regions from SNP 72178 to 72778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,712 DEBUG Processing 643/725 atomic regions from SNP 192707 to 193307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,781 DEBUG Processing 52/664 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,784 DEBUG Processing 351/708 atomic regions from SNP 105057 to 105657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,842 DEBUG Processing 242/677 atomic regions from SNP 72478 to 73078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,947 DEBUG Processing 644/725 atomic regions from SNP 193007 to 193607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,983 DEBUG Processing 352/708 atomic regions from SNP 105357 to 105957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,986 DEBUG Processing 53/664 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,065 DEBUG Processing 243/677 atomic regions from SNP 72778 to 73378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,182 DEBUG Processing 645/725 atomic regions from SNP 193307 to 193907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,204 DEBUG Processing 353/708 atomic regions from SNP 105657 to 106257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,231 DEBUG Processing 54/664 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,357 DEBUG Processing 244/677 atomic regions from SNP 73078 to 73678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,423 DEBUG Processing 354/708 atomic regions from SNP 105957 to 106557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,438 DEBUG Processing 646/725 atomic regions from SNP 193607 to 194207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,443 DEBUG Processing 55/664 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,565 DEBUG Processing 245/677 atomic regions from SNP 73378 to 73978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,652 DEBUG Processing 355/708 atomic regions from SNP 106257 to 106857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,663 DEBUG Processing 56/664 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,675 DEBUG Processing 647/725 atomic regions from SNP 193907 to 194507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,766 DEBUG Processing 246/677 atomic regions from SNP 73678 to 74278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,856 DEBUG Processing 356/708 atomic regions from SNP 106557 to 107157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,868 DEBUG Processing 57/664 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,882 DEBUG Processing 648/725 atomic regions from SNP 194207 to 194807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,963 DEBUG Processing 247/677 atomic regions from SNP 73978 to 74578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,057 DEBUG Processing 357/708 atomic regions from SNP 106857 to 107457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,066 DEBUG Processing 58/664 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,088 DEBUG Processing 649/725 atomic regions from SNP 194507 to 195107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,163 DEBUG Processing 248/677 atomic regions from SNP 74278 to 74878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,262 DEBUG Processing 358/708 atomic regions from SNP 107157 to 107757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,263 DEBUG Processing 59/664 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,294 DEBUG Processing 650/725 atomic regions from SNP 194807 to 195407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,360 DEBUG Processing 249/677 atomic regions from SNP 74578 to 75178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,457 DEBUG Processing 60/664 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,463 DEBUG Processing 359/708 atomic regions from SNP 107457 to 108057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,502 DEBUG Processing 651/725 atomic regions from SNP 195107 to 195707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,576 DEBUG Processing 250/677 atomic regions from SNP 74878 to 75478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,659 DEBUG Processing 61/664 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,660 DEBUG Processing 360/708 atomic regions from SNP 107757 to 108357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,709 DEBUG Processing 652/725 atomic regions from SNP 195407 to 196007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,788 DEBUG Processing 251/677 atomic regions from SNP 75178 to 75778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,863 DEBUG Processing 361/708 atomic regions from SNP 108057 to 108657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,867 DEBUG Processing 62/664 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,919 DEBUG Processing 653/725 atomic regions from SNP 195707 to 196307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,981 DEBUG Processing 252/677 atomic regions from SNP 75478 to 76078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,065 DEBUG Processing 362/708 atomic regions from SNP 108357 to 108957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,074 DEBUG Processing 63/664 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,132 DEBUG Processing 654/725 atomic regions from SNP 196007 to 196607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,179 DEBUG Processing 253/677 atomic regions from SNP 75778 to 76378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,269 DEBUG Processing 363/708 atomic regions from SNP 108657 to 109257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,290 DEBUG Processing 64/664 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,347 DEBUG Processing 655/725 atomic regions from SNP 196307 to 196907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,381 DEBUG Processing 254/677 atomic regions from SNP 76078 to 76678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,470 DEBUG Processing 364/708 atomic regions from SNP 108957 to 109557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,500 DEBUG Processing 65/664 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,560 DEBUG Processing 656/725 atomic regions from SNP 196607 to 197207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,597 DEBUG Processing 255/677 atomic regions from SNP 76378 to 76978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,672 DEBUG Processing 365/708 atomic regions from SNP 109257 to 109857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,714 DEBUG Processing 66/664 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,772 DEBUG Processing 657/725 atomic regions from SNP 196907 to 197507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,813 DEBUG Processing 256/677 atomic regions from SNP 76678 to 77278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,874 DEBUG Processing 366/708 atomic regions from SNP 109557 to 110157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,929 DEBUG Processing 67/664 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,978 DEBUG Processing 658/725 atomic regions from SNP 197207 to 197807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,019 DEBUG Processing 257/677 atomic regions from SNP 76978 to 77578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,071 DEBUG Processing 367/708 atomic regions from SNP 109857 to 110457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,142 DEBUG Processing 68/664 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,181 DEBUG Processing 659/725 atomic regions from SNP 197507 to 198107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,242 DEBUG Processing 258/677 atomic regions from SNP 77278 to 77878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,269 DEBUG Processing 368/708 atomic regions from SNP 110157 to 110757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,347 DEBUG Processing 69/664 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,381 DEBUG Processing 660/725 atomic regions from SNP 197807 to 198407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,434 DEBUG Processing 259/677 atomic regions from SNP 77578 to 78178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,467 DEBUG Processing 369/708 atomic regions from SNP 110457 to 111057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,551 DEBUG Processing 70/664 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,583 DEBUG Processing 661/725 atomic regions from SNP 198107 to 198707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,628 DEBUG Processing 260/677 atomic regions from SNP 77878 to 78478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,662 DEBUG Processing 370/708 atomic regions from SNP 110757 to 111357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,760 DEBUG Processing 71/664 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,800 DEBUG Processing 662/725 atomic regions from SNP 198407 to 199007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,822 DEBUG Processing 261/677 atomic regions from SNP 78178 to 78778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,858 DEBUG Processing 371/708 atomic regions from SNP 111057 to 111657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,957 DEBUG Processing 72/664 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,013 DEBUG Processing 262/677 atomic regions from SNP 78478 to 79078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,016 DEBUG Processing 663/725 atomic regions from SNP 198707 to 199307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,052 DEBUG Processing 372/708 atomic regions from SNP 111357 to 111957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,156 DEBUG Processing 73/664 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,207 DEBUG Processing 263/677 atomic regions from SNP 78778 to 79378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,240 DEBUG Processing 664/725 atomic regions from SNP 199007 to 199607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,249 DEBUG Processing 373/708 atomic regions from SNP 111657 to 112257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,361 DEBUG Processing 74/664 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,401 DEBUG Processing 264/677 atomic regions from SNP 79078 to 79678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,449 DEBUG Processing 374/708 atomic regions from SNP 111957 to 112557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,449 DEBUG Processing 665/725 atomic regions from SNP 199307 to 199907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,568 DEBUG Processing 75/664 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,594 DEBUG Processing 265/677 atomic regions from SNP 79378 to 79978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,651 DEBUG Processing 375/708 atomic regions from SNP 112257 to 112857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,671 DEBUG Processing 666/725 atomic regions from SNP 199607 to 200207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,775 DEBUG Processing 76/664 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,796 DEBUG Processing 266/677 atomic regions from SNP 79678 to 80278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,858 DEBUG Processing 376/708 atomic regions from SNP 112557 to 113157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,898 DEBUG Processing 667/725 atomic regions from SNP 199907 to 200507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,981 DEBUG Processing 77/664 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,010 DEBUG Processing 267/677 atomic regions from SNP 79978 to 80578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,058 DEBUG Processing 377/708 atomic regions from SNP 112857 to 113457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,107 DEBUG Processing 668/725 atomic regions from SNP 200207 to 200807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,186 DEBUG Processing 78/664 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,212 DEBUG Processing 268/677 atomic regions from SNP 80278 to 80878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,253 DEBUG Processing 378/708 atomic regions from SNP 113157 to 113757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,307 DEBUG Processing 669/725 atomic regions from SNP 200507 to 201107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,383 DEBUG Processing 79/664 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,431 DEBUG Processing 269/677 atomic regions from SNP 80578 to 81178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,446 DEBUG Processing 379/708 atomic regions from SNP 113457 to 114057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,507 DEBUG Processing 670/725 atomic regions from SNP 200807 to 201407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,581 DEBUG Processing 80/664 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,643 DEBUG Processing 380/708 atomic regions from SNP 113757 to 114357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,654 DEBUG Processing 270/677 atomic regions from SNP 80878 to 81478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,726 DEBUG Processing 671/725 atomic regions from SNP 201107 to 201707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,777 DEBUG Processing 81/664 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,840 DEBUG Processing 381/708 atomic regions from SNP 114057 to 114657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,874 DEBUG Processing 271/677 atomic regions from SNP 81178 to 81778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,923 DEBUG Processing 672/725 atomic regions from SNP 201407 to 202007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,991 DEBUG Processing 82/664 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,038 DEBUG Processing 382/708 atomic regions from SNP 114357 to 114957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,102 DEBUG Processing 272/677 atomic regions from SNP 81478 to 82078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,124 DEBUG Processing 673/725 atomic regions from SNP 201707 to 202307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,204 DEBUG Processing 83/664 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,236 DEBUG Processing 383/708 atomic regions from SNP 114657 to 115257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,316 DEBUG Processing 273/677 atomic regions from SNP 81778 to 82378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,324 DEBUG Processing 674/725 atomic regions from SNP 202007 to 202607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,406 DEBUG Processing 84/664 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,433 DEBUG Processing 384/708 atomic regions from SNP 114957 to 115557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,530 DEBUG Processing 274/677 atomic regions from SNP 82078 to 82678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,535 DEBUG Processing 675/725 atomic regions from SNP 202307 to 202907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,608 DEBUG Processing 85/664 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,641 DEBUG Processing 385/708 atomic regions from SNP 115257 to 115857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,725 DEBUG Processing 275/677 atomic regions from SNP 82378 to 82978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,733 DEBUG Processing 676/725 atomic regions from SNP 202607 to 203207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,825 DEBUG Processing 86/664 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,868 DEBUG Processing 386/708 atomic regions from SNP 115557 to 116157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,930 DEBUG Processing 276/677 atomic regions from SNP 82678 to 83278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,945 DEBUG Processing 677/725 atomic regions from SNP 202907 to 203507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,047 DEBUG Processing 87/664 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,100 DEBUG Processing 387/708 atomic regions from SNP 115857 to 116457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,142 DEBUG Processing 277/677 atomic regions from SNP 82978 to 83578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,167 DEBUG Processing 678/725 atomic regions from SNP 203207 to 203807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,272 DEBUG Processing 88/664 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,339 DEBUG Processing 388/708 atomic regions from SNP 116157 to 116757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,368 DEBUG Processing 278/677 atomic regions from SNP 83278 to 83878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,403 DEBUG Processing 679/725 atomic regions from SNP 203507 to 204107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,487 DEBUG Processing 89/664 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,583 DEBUG Processing 389/708 atomic regions from SNP 116457 to 117057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,591 DEBUG Processing 279/677 atomic regions from SNP 83578 to 84178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,631 DEBUG Processing 680/725 atomic regions from SNP 203807 to 204407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,699 DEBUG Processing 90/664 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,842 DEBUG Processing 280/677 atomic regions from SNP 83878 to 84478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,846 DEBUG Processing 390/708 atomic regions from SNP 116757 to 117357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,865 DEBUG Processing 681/725 atomic regions from SNP 204107 to 204707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,915 DEBUG Processing 91/664 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,064 DEBUG Processing 281/677 atomic regions from SNP 84178 to 84778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,100 DEBUG Processing 682/725 atomic regions from SNP 204407 to 205007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,109 DEBUG Processing 391/708 atomic regions from SNP 117057 to 117657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,139 DEBUG Processing 92/664 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,284 DEBUG Processing 282/677 atomic regions from SNP 84478 to 85078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,330 DEBUG Processing 683/725 atomic regions from SNP 204707 to 205307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,364 DEBUG Processing 93/664 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,368 DEBUG Processing 392/708 atomic regions from SNP 117357 to 117957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,509 DEBUG Processing 283/677 atomic regions from SNP 84778 to 85378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,546 DEBUG Processing 684/725 atomic regions from SNP 205007 to 205607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,581 DEBUG Processing 94/664 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,607 DEBUG Processing 393/708 atomic regions from SNP 117657 to 118257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,735 DEBUG Processing 284/677 atomic regions from SNP 85078 to 85678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,761 DEBUG Processing 685/725 atomic regions from SNP 205307 to 205907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,793 DEBUG Processing 95/664 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,835 DEBUG Processing 394/708 atomic regions from SNP 117957 to 118557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,948 DEBUG Processing 285/677 atomic regions from SNP 85378 to 85978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,972 DEBUG Processing 686/725 atomic regions from SNP 205607 to 206207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,978 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:54:49,980 DEBUG chr15: Signal quantile: 0.989. signal threshold: 17. Best RMSEA: 0.012 2025-01-31 09:54:50,006 DEBUG Processing 96/664 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,061 DEBUG Processing 395/708 atomic regions from SNP 118257 to 118857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,141 DEBUG Processing 286/677 atomic regions from SNP 85678 to 86278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,175 DEBUG Processing 687/725 atomic regions from SNP 205907 to 206507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,215 DEBUG Processing 97/664 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,287 DEBUG Processing 396/708 atomic regions from SNP 118557 to 119157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,336 DEBUG Processing 287/677 atomic regions from SNP 85978 to 86578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,377 DEBUG Processing 688/725 atomic regions from SNP 206207 to 206807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,437 DEBUG Processing 98/664 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,511 DEBUG Processing 397/708 atomic regions from SNP 118857 to 119457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,530 DEBUG Processing 288/677 atomic regions from SNP 86278 to 86878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,579 DEBUG Processing 689/725 atomic regions from SNP 206507 to 207107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,647 DEBUG Processing 99/664 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,715 DEBUG Processing 398/708 atomic regions from SNP 119157 to 119757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,727 DEBUG Processing 289/677 atomic regions from SNP 86578 to 87178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,779 DEBUG Processing 690/725 atomic regions from SNP 206807 to 207407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,852 DEBUG Processing 100/664 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,923 DEBUG Processing 399/708 atomic regions from SNP 119457 to 120057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,940 DEBUG Processing 290/677 atomic regions from SNP 86878 to 87478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,997 DEBUG Processing 691/725 atomic regions from SNP 207107 to 207707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,070 DEBUG Processing 101/664 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,145 DEBUG Processing 400/708 atomic regions from SNP 119757 to 120357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,153 DEBUG Processing 291/677 atomic regions from SNP 87178 to 87778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,215 DEBUG Processing 692/725 atomic regions from SNP 207407 to 208007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,301 DEBUG Processing 102/664 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,356 DEBUG Processing 401/708 atomic regions from SNP 120057 to 120657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,361 DEBUG Processing 292/677 atomic regions from SNP 87478 to 88078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,429 DEBUG Processing 693/725 atomic regions from SNP 207707 to 208307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,556 DEBUG Processing 103/664 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,562 DEBUG Processing 293/677 atomic regions from SNP 87778 to 88378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,563 DEBUG Processing 402/708 atomic regions from SNP 120357 to 120957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,644 DEBUG Processing 694/725 atomic regions from SNP 208007 to 208607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,763 DEBUG chr15 total SNP count: 180141 2025-01-31 09:54:51,764 DEBUG chr15 length: 104043685 2025-01-31 09:54:51,764 DEBUG ----------------------------------------- 2025-01-31 09:54:51,764 INFO Processing SNPs in chr15 2025-01-31 09:54:51,769 DEBUG Processing 294/677 atomic regions from SNP 88078 to 88678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,772 DEBUG Processing 403/708 atomic regions from SNP 120657 to 121257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,804 DEBUG Processing 104/664 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,868 DEBUG Processing 695/725 atomic regions from SNP 208307 to 208907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,938 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 180141)] 2025-01-31 09:54:51,971 DEBUG Processing 295/677 atomic regions from SNP 88378 to 88978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,980 DEBUG Processing 404/708 atomic regions from SNP 120957 to 121557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,043 DEBUG Processing 105/664 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,059 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:52,116 DEBUG Processing 696/725 atomic regions from SNP 208607 to 209207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,179 DEBUG Processing 296/677 atomic regions from SNP 88678 to 89278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,192 DEBUG Processing 405/708 atomic regions from SNP 121257 to 121857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,291 DEBUG Processing 106/664 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,359 DEBUG Processing 697/725 atomic regions from SNP 208907 to 209507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,386 DEBUG Processing 297/677 atomic regions from SNP 88978 to 89578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,404 DEBUG Processing 406/708 atomic regions from SNP 121557 to 122157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,513 DEBUG Processing 107/664 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,573 DEBUG Processing 698/725 atomic regions from SNP 209207 to 209807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,588 DEBUG Processing 298/677 atomic regions from SNP 89278 to 89878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,635 DEBUG Processing 407/708 atomic regions from SNP 121857 to 122457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,734 DEBUG Processing 108/664 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,794 DEBUG Processing 699/725 atomic regions from SNP 209507 to 210107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,794 DEBUG Processing 299/677 atomic regions from SNP 89578 to 90178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,855 DEBUG Processing 408/708 atomic regions from SNP 122157 to 122757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,960 DEBUG Processing 109/664 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,010 DEBUG Processing 300/677 atomic regions from SNP 89878 to 90478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,017 DEBUG Processing 700/725 atomic regions from SNP 209807 to 210407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,063 DEBUG Processing 409/708 atomic regions from SNP 122457 to 123057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,185 DEBUG Processing 110/664 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,247 DEBUG Processing 301/677 atomic regions from SNP 90178 to 90778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,266 DEBUG Processing 701/725 atomic regions from SNP 210107 to 210707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,283 DEBUG Processing 410/708 atomic regions from SNP 122757 to 123357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,404 DEBUG Processing 111/664 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,485 DEBUG Processing 302/677 atomic regions from SNP 90478 to 91078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,490 DEBUG Processing 702/725 atomic regions from SNP 210407 to 211007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,511 DEBUG Processing 411/708 atomic regions from SNP 123057 to 123657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,624 DEBUG Processing 112/664 atomic regions from SNP 33411 to 34012 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,714 DEBUG Processing 303/677 atomic regions from SNP 90778 to 91378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,726 DEBUG Processing 412/708 atomic regions from SNP 123357 to 123957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,728 DEBUG Processing 703/725 atomic regions from SNP 210707 to 211307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,842 DEBUG Processing 113/664 atomic regions from SNP 33712 to 34313 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,930 DEBUG Processing 304/677 atomic regions from SNP 91078 to 91678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,932 DEBUG Processing 413/708 atomic regions from SNP 123657 to 124257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,970 DEBUG Processing 704/725 atomic regions from SNP 211007 to 211607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,049 DEBUG Processing 114/664 atomic regions from SNP 34013 to 34614 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,144 DEBUG Processing 414/708 atomic regions from SNP 123957 to 124557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,165 DEBUG Processing 305/677 atomic regions from SNP 91378 to 91978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,205 DEBUG Processing 705/725 atomic regions from SNP 211307 to 211907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,268 DEBUG Processing 115/664 atomic regions from SNP 34314 to 34915 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,351 DEBUG Processing 415/708 atomic regions from SNP 124257 to 124857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,406 DEBUG Processing 306/677 atomic regions from SNP 91678 to 92278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,426 DEBUG Processing 706/725 atomic regions from SNP 211607 to 212207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,483 DEBUG Processing 116/664 atomic regions from SNP 34615 to 35216 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,560 DEBUG Processing 416/708 atomic regions from SNP 124557 to 125157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,647 DEBUG Processing 707/725 atomic regions from SNP 211907 to 212507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,654 DEBUG Processing 307/677 atomic regions from SNP 91978 to 92578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,699 DEBUG Processing 117/664 atomic regions from SNP 34916 to 35517 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,765 DEBUG Processing 417/708 atomic regions from SNP 124857 to 125457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,873 DEBUG Processing 708/725 atomic regions from SNP 212207 to 212807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,890 DEBUG Processing 308/677 atomic regions from SNP 92278 to 92878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,909 DEBUG Processing 118/664 atomic regions from SNP 35217 to 35818 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,967 DEBUG Processing 418/708 atomic regions from SNP 125157 to 125757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,109 DEBUG Processing 709/725 atomic regions from SNP 212507 to 213107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,117 DEBUG Processing 119/664 atomic regions from SNP 35518 to 36119 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,123 DEBUG Processing 309/677 atomic regions from SNP 92578 to 93178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,169 DEBUG Processing 419/708 atomic regions from SNP 125457 to 126057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,324 DEBUG Processing 120/664 atomic regions from SNP 35819 to 36420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,330 DEBUG Processing 710/725 atomic regions from SNP 212807 to 213407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,332 DEBUG Processing 310/677 atomic regions from SNP 92878 to 93478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,387 DEBUG Processing 420/708 atomic regions from SNP 125757 to 126357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,531 DEBUG Processing 121/664 atomic regions from SNP 36120 to 36721 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,534 DEBUG Processing 311/677 atomic regions from SNP 93178 to 93778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,569 DEBUG Processing 711/725 atomic regions from SNP 213107 to 213707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,611 DEBUG Processing 421/708 atomic regions from SNP 126057 to 126657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,742 DEBUG Processing 312/677 atomic regions from SNP 93478 to 94078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,743 DEBUG Processing 122/664 atomic regions from SNP 36421 to 37022 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,812 DEBUG Processing 712/725 atomic regions from SNP 213407 to 214007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,814 DEBUG Processing 422/708 atomic regions from SNP 126357 to 126957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,944 DEBUG Processing 313/677 atomic regions from SNP 93778 to 94378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,953 DEBUG Processing 123/664 atomic regions from SNP 36722 to 37323 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,020 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:54:56,029 DEBUG Processing 713/725 atomic regions from SNP 213707 to 214307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,043 DEBUG Processing 423/708 atomic regions from SNP 126657 to 127257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,143 DEBUG Processing 314/677 atomic regions from SNP 94078 to 94678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,170 DEBUG Processing 124/664 atomic regions from SNP 37023 to 37624 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,238 DEBUG Processing 714/725 atomic regions from SNP 214007 to 214607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,276 DEBUG Processing 424/708 atomic regions from SNP 126957 to 127557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,355 DEBUG Processing 315/677 atomic regions from SNP 94378 to 94978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,386 DEBUG Processing 125/664 atomic regions from SNP 37324 to 37925 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,464 DEBUG Processing 715/725 atomic regions from SNP 214307 to 214907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,524 DEBUG Processing 425/708 atomic regions from SNP 127257 to 127857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,562 DEBUG Processing 316/677 atomic regions from SNP 94678 to 95278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,600 DEBUG Processing 126/664 atomic regions from SNP 37625 to 38226 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,675 DEBUG Processing 716/725 atomic regions from SNP 214607 to 215207 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,759 DEBUG Processing 426/708 atomic regions from SNP 127557 to 128157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,764 DEBUG Processing 317/677 atomic regions from SNP 94978 to 95578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,817 DEBUG Processing 127/664 atomic regions from SNP 37926 to 38527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,880 DEBUG Processing 717/725 atomic regions from SNP 214907 to 215507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,971 DEBUG Processing 318/677 atomic regions from SNP 95278 to 95878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,988 DEBUG Processing 427/708 atomic regions from SNP 127857 to 128457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,054 DEBUG Processing 128/664 atomic regions from SNP 38227 to 38828 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,090 DEBUG Processing 718/725 atomic regions from SNP 215207 to 215807 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,176 DEBUG Processing 319/677 atomic regions from SNP 95578 to 96178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,208 DEBUG Processing 428/708 atomic regions from SNP 128157 to 128757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,284 DEBUG Processing 129/664 atomic regions from SNP 38528 to 39129 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,301 DEBUG Processing 719/725 atomic regions from SNP 215507 to 216107 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,382 DEBUG Processing 320/677 atomic regions from SNP 95878 to 96478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,416 DEBUG Processing 429/708 atomic regions from SNP 128457 to 129057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,491 DEBUG Processing 130/664 atomic regions from SNP 38829 to 39430 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,523 DEBUG Processing 720/725 atomic regions from SNP 215807 to 216407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,584 DEBUG Processing 321/677 atomic regions from SNP 96178 to 96778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,633 DEBUG Processing 430/708 atomic regions from SNP 128757 to 129357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,706 DEBUG Processing 131/664 atomic regions from SNP 39130 to 39731 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,756 DEBUG Processing 721/725 atomic regions from SNP 216107 to 216707 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,789 DEBUG Processing 322/677 atomic regions from SNP 96478 to 97078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,852 DEBUG Processing 431/708 atomic regions from SNP 129057 to 129657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,921 DEBUG Processing 132/664 atomic regions from SNP 39431 to 40032 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,977 DEBUG Processing 722/725 atomic regions from SNP 216407 to 217007 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,992 DEBUG Processing 323/677 atomic regions from SNP 96778 to 97378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,054 DEBUG Processing 432/708 atomic regions from SNP 129357 to 129957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,136 DEBUG Processing 133/664 atomic regions from SNP 39732 to 40333 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,192 DEBUG Processing 723/725 atomic regions from SNP 216707 to 217307 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,220 DEBUG Processing 324/677 atomic regions from SNP 97078 to 97678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,257 DEBUG Processing 433/708 atomic regions from SNP 129657 to 130257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,352 DEBUG Processing 134/664 atomic regions from SNP 40033 to 40634 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,420 DEBUG Processing 724/725 atomic regions from SNP 217007 to 217607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,457 DEBUG Processing 325/677 atomic regions from SNP 97378 to 97978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,462 DEBUG Processing 434/708 atomic regions from SNP 129957 to 130557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,570 DEBUG Processing 135/664 atomic regions from SNP 40334 to 40935 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,640 DEBUG Processing 725/725 atomic regions from SNP 217307 to 217907 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,672 DEBUG Processing 435/708 atomic regions from SNP 130257 to 130857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,704 DEBUG Processing 326/677 atomic regions from SNP 97678 to 98278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,779 DEBUG Unique SNPs positions in subchromosome 1: 217908 2025-01-31 09:54:58,788 DEBUG Processing 136/664 atomic regions from SNP 40635 to 41236 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,877 DEBUG Processing 436/708 atomic regions from SNP 130557 to 131157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,931 DEBUG Processing 327/677 atomic regions from SNP 97978 to 98578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,005 DEBUG Processing 137/664 atomic regions from SNP 40936 to 41537 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,112 DEBUG Processing 437/708 atomic regions from SNP 130857 to 131457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,135 DEBUG Processing 328/677 atomic regions from SNP 98278 to 98878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,226 DEBUG Processing 138/664 atomic regions from SNP 41237 to 41838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,339 DEBUG Processing 438/708 atomic regions from SNP 131157 to 131757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,352 DEBUG Processing 329/677 atomic regions from SNP 98578 to 99178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,440 DEBUG Processing 139/664 atomic regions from SNP 41538 to 42139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,563 DEBUG Processing 330/677 atomic regions from SNP 98878 to 99478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,570 DEBUG Processing 439/708 atomic regions from SNP 131457 to 132057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,657 DEBUG Processing 140/664 atomic regions from SNP 41839 to 42440 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,765 DEBUG Processing 331/677 atomic regions from SNP 99178 to 99778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,803 DEBUG Processing 440/708 atomic regions from SNP 131757 to 132357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,870 DEBUG Processing 141/664 atomic regions from SNP 42140 to 42741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,962 DEBUG Processing 332/677 atomic regions from SNP 99478 to 100078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,040 DEBUG Processing 441/708 atomic regions from SNP 132057 to 132657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,083 DEBUG Processing 142/664 atomic regions from SNP 42441 to 43042 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,175 DEBUG Processing 333/677 atomic regions from SNP 99778 to 100378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,275 DEBUG Processing 442/708 atomic regions from SNP 132357 to 132957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,296 DEBUG Processing 143/664 atomic regions from SNP 42742 to 43343 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,407 DEBUG Processing 334/677 atomic regions from SNP 100078 to 100678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,502 DEBUG Processing 443/708 atomic regions from SNP 132657 to 133257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,506 DEBUG Processing 144/664 atomic regions from SNP 43043 to 43644 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,647 DEBUG Processing 335/677 atomic regions from SNP 100378 to 100978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,725 DEBUG Processing 444/708 atomic regions from SNP 132957 to 133557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,730 DEBUG Processing 145/664 atomic regions from SNP 43344 to 43945 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,852 DEBUG Processing 336/677 atomic regions from SNP 100678 to 101278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,932 DEBUG Processing 445/708 atomic regions from SNP 133257 to 133857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,946 DEBUG Processing 146/664 atomic regions from SNP 43645 to 44246 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,056 DEBUG Processing 337/677 atomic regions from SNP 100978 to 101578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,142 DEBUG Processing 446/708 atomic regions from SNP 133557 to 134157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,157 DEBUG Processing 147/664 atomic regions from SNP 43946 to 44547 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,271 DEBUG Processing 338/677 atomic regions from SNP 101278 to 101878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,355 DEBUG Processing 447/708 atomic regions from SNP 133857 to 134457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,388 DEBUG Processing 148/664 atomic regions from SNP 44247 to 44848 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,489 DEBUG Processing 339/677 atomic regions from SNP 101578 to 102178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,557 DEBUG Processing 448/708 atomic regions from SNP 134157 to 134757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,617 DEBUG Processing 149/664 atomic regions from SNP 44548 to 45149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,688 DEBUG Processing 340/677 atomic regions from SNP 101878 to 102478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,755 DEBUG Processing 449/708 atomic regions from SNP 134457 to 135057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,842 DEBUG Processing 150/664 atomic regions from SNP 44849 to 45450 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,891 DEBUG Processing 341/677 atomic regions from SNP 102178 to 102778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,956 DEBUG Processing 450/708 atomic regions from SNP 134757 to 135357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,055 DEBUG Processing 151/664 atomic regions from SNP 45150 to 45751 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,094 DEBUG Processing 342/677 atomic regions from SNP 102478 to 103078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,179 DEBUG Processing 451/708 atomic regions from SNP 135057 to 135657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,264 DEBUG Processing 152/664 atomic regions from SNP 45451 to 46052 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,292 DEBUG Processing 343/677 atomic regions from SNP 102778 to 103378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,395 DEBUG Processing 452/708 atomic regions from SNP 135357 to 135957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,471 DEBUG Processing 153/664 atomic regions from SNP 45752 to 46353 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,487 DEBUG Processing 344/677 atomic regions from SNP 103078 to 103678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,620 DEBUG Processing 453/708 atomic regions from SNP 135657 to 136257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,689 DEBUG Processing 154/664 atomic regions from SNP 46053 to 46654 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,689 DEBUG Processing 345/677 atomic regions from SNP 103378 to 103978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,833 DEBUG Processing 454/708 atomic regions from SNP 135957 to 136557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,887 DEBUG Processing 346/677 atomic regions from SNP 103678 to 104278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,913 DEBUG Processing 155/664 atomic regions from SNP 46354 to 46955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,043 DEBUG Processing 455/708 atomic regions from SNP 136257 to 136857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,093 DEBUG Processing 347/677 atomic regions from SNP 103978 to 104578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,153 DEBUG Processing 156/664 atomic regions from SNP 46655 to 47256 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,246 DEBUG Processing 456/708 atomic regions from SNP 136557 to 137157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,293 DEBUG Processing 348/677 atomic regions from SNP 104278 to 104878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,382 DEBUG Processing 157/664 atomic regions from SNP 46956 to 47557 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,450 DEBUG Processing 457/708 atomic regions from SNP 136857 to 137457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,493 DEBUG Processing 349/677 atomic regions from SNP 104578 to 105178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,590 DEBUG Processing 158/664 atomic regions from SNP 47257 to 47858 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,653 DEBUG Processing 458/708 atomic regions from SNP 137157 to 137757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,699 DEBUG Processing 350/677 atomic regions from SNP 104878 to 105478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,797 DEBUG Processing 159/664 atomic regions from SNP 47558 to 48159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,858 DEBUG Processing 459/708 atomic regions from SNP 137457 to 138057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,919 DEBUG Processing 351/677 atomic regions from SNP 105178 to 105778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,009 DEBUG Processing 160/664 atomic regions from SNP 47859 to 48460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,064 DEBUG Processing 460/708 atomic regions from SNP 137757 to 138357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,146 DEBUG Processing 352/677 atomic regions from SNP 105478 to 106078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,215 DEBUG Processing 161/664 atomic regions from SNP 48160 to 48761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,268 DEBUG Processing 461/708 atomic regions from SNP 138057 to 138657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,367 DEBUG Processing 353/677 atomic regions from SNP 105778 to 106378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,415 DEBUG Processing 162/664 atomic regions from SNP 48461 to 49062 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,467 DEBUG Processing 462/708 atomic regions from SNP 138357 to 138957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,598 DEBUG Processing 354/677 atomic regions from SNP 106078 to 106678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,623 DEBUG Processing 163/664 atomic regions from SNP 48762 to 49363 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,670 DEBUG Processing 463/708 atomic regions from SNP 138657 to 139257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,817 DEBUG Processing 355/677 atomic regions from SNP 106378 to 106978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,831 DEBUG Processing 164/664 atomic regions from SNP 49063 to 49664 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,873 DEBUG Processing 464/708 atomic regions from SNP 138957 to 139557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,041 DEBUG Processing 165/664 atomic regions from SNP 49364 to 49965 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,052 DEBUG Processing 356/677 atomic regions from SNP 106678 to 107278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,080 DEBUG Processing 465/708 atomic regions from SNP 139257 to 139857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,258 DEBUG Processing 166/664 atomic regions from SNP 49665 to 50266 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,279 DEBUG Processing 357/677 atomic regions from SNP 106978 to 107578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,292 DEBUG Processing 466/708 atomic regions from SNP 139557 to 140157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,467 DEBUG Processing 167/664 atomic regions from SNP 49966 to 50567 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,501 DEBUG Processing 467/708 atomic regions from SNP 139857 to 140457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,520 DEBUG Processing 358/677 atomic regions from SNP 107278 to 107878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,674 DEBUG Processing 168/664 atomic regions from SNP 50267 to 50868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,704 DEBUG Processing 468/708 atomic regions from SNP 140157 to 140757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,751 DEBUG Processing 359/677 atomic regions from SNP 107578 to 108178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,885 DEBUG Processing 169/664 atomic regions from SNP 50568 to 51169 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,912 DEBUG Processing 469/708 atomic regions from SNP 140457 to 141057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,957 DEBUG Subchromosome time: 188.7577570459107, subchromosome SNPs: 217908 2025-01-31 09:55:05,957 DEBUG Estimated BADs: [0.94, 1.88, 0.94, 9.38, 1.88, 0.94, 1.88, 0.38, 1.88, 3.75, 9.38, 1.88, 5.63, 1.88, 5.63, 1.88, 0.94, 3.75, 0.47, 1.88, 5.63, 1.88, 3.75] SNP counts: [17203, 3438, 9063, 3302, 5887, 10055, 11843, 3305, 6123, 1850, 1088, 22603, 5546, 4019, 9515, 22160, 18631, 853, 5710, 22514, 8095, 15884, 9221] SNP IDs counts: [17203, 3438, 9063, 3302, 5887, 10055, 11843, 3305, 6123, 1850, 1088, 22603, 5546, 4019, 9515, 22160, 18631, 853, 5710, 22514, 8095, 15884, 9221] Critical gap: 597800bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.30Mbp, 15.24Mbp, 20.64Mbp, 22.39Mbp, 25.70Mbp, 31.20Mbp, 37.83Mbp, 39.80Mbp, 43.10Mbp, 44.06Mbp, 44.65Mbp, 56.83Mbp, 59.75Mbp, 61.87Mbp, 66.88Mbp, 79.01Mbp, 90.11Mbp, 90.61Mbp, 94.00Mbp, 106.16Mbp, 110.66Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:55:05,958 DEBUG chr9 time: 188.75829640391748 s 2025-01-31 09:55:05,972 DEBUG Processing 360/677 atomic regions from SNP 107878 to 108478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,077 DEBUG chr9: Fitting background model for 23 segments 2025-01-31 09:55:06,099 DEBUG Processing 170/664 atomic regions from SNP 50869 to 51470 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,146 DEBUG Processing 470/708 atomic regions from SNP 140757 to 141357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,182 DEBUG Processing 361/677 atomic regions from SNP 108178 to 108778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,313 DEBUG Processing 171/664 atomic regions from SNP 51170 to 51771 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,387 DEBUG Processing 471/708 atomic regions from SNP 141057 to 141657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,396 DEBUG Processing 362/677 atomic regions from SNP 108478 to 109078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,521 DEBUG Processing 172/664 atomic regions from SNP 51471 to 52072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,613 DEBUG Processing 363/677 atomic regions from SNP 108778 to 109378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,621 DEBUG Processing 472/708 atomic regions from SNP 141357 to 141957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,725 DEBUG Processing 173/664 atomic regions from SNP 51772 to 52373 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,825 DEBUG Processing 364/677 atomic regions from SNP 109078 to 109678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,859 DEBUG Processing 473/708 atomic regions from SNP 141657 to 142257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,927 DEBUG Processing 174/664 atomic regions from SNP 52073 to 52674 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,932 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:55:06,933 DEBUG chr16: Signal quantile: 0.992. signal threshold: 15. Best RMSEA: 0.014 2025-01-31 09:55:07,038 DEBUG Processing 365/677 atomic regions from SNP 109378 to 109978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,079 DEBUG Processing 474/708 atomic regions from SNP 141957 to 142557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,135 DEBUG Processing 175/664 atomic regions from SNP 52374 to 52975 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,252 DEBUG Processing 366/677 atomic regions from SNP 109678 to 110278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,295 DEBUG Processing 475/708 atomic regions from SNP 142257 to 142857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,343 DEBUG Processing 176/664 atomic regions from SNP 52675 to 53276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,465 DEBUG Processing 367/677 atomic regions from SNP 109978 to 110578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,510 DEBUG Processing 476/708 atomic regions from SNP 142557 to 143157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,545 DEBUG Processing 177/664 atomic regions from SNP 52976 to 53577 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,674 DEBUG Processing 368/677 atomic regions from SNP 110278 to 110878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,722 DEBUG Processing 477/708 atomic regions from SNP 142857 to 143457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,749 DEBUG Processing 178/664 atomic regions from SNP 53277 to 53878 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,888 DEBUG Processing 369/677 atomic regions from SNP 110578 to 111178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,948 DEBUG Processing 478/708 atomic regions from SNP 143157 to 143757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,960 DEBUG Processing 179/664 atomic regions from SNP 53578 to 54179 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,104 DEBUG Processing 370/677 atomic regions from SNP 110878 to 111478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,173 DEBUG Processing 180/664 atomic regions from SNP 53879 to 54480 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,177 DEBUG Processing 479/708 atomic regions from SNP 143457 to 144057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,311 DEBUG Processing 371/677 atomic regions from SNP 111178 to 111778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,383 DEBUG Processing 181/664 atomic regions from SNP 54180 to 54781 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,399 DEBUG Processing 480/708 atomic regions from SNP 143757 to 144357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,536 DEBUG Processing 372/677 atomic regions from SNP 111478 to 112078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,603 DEBUG Processing 182/664 atomic regions from SNP 54481 to 55082 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,645 DEBUG Processing 481/708 atomic regions from SNP 144057 to 144657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,708 DEBUG chr16 total SNP count: 168912 2025-01-31 09:55:08,709 DEBUG chr16 length: 98207768 2025-01-31 09:55:08,709 DEBUG ----------------------------------------- 2025-01-31 09:55:08,709 INFO Processing SNPs in chr16 2025-01-31 09:55:08,752 DEBUG Processing 373/677 atomic regions from SNP 111778 to 112378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,813 DEBUG Processing 183/664 atomic regions from SNP 54782 to 55383 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,877 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 168912)] 2025-01-31 09:55:08,894 DEBUG Processing 482/708 atomic regions from SNP 144357 to 144957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,958 DEBUG Processing 374/677 atomic regions from SNP 112078 to 112678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,992 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:09,011 DEBUG Processing 184/664 atomic regions from SNP 55083 to 55684 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,129 DEBUG Processing 483/708 atomic regions from SNP 144657 to 145257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,165 DEBUG Processing 375/677 atomic regions from SNP 112378 to 112978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,211 DEBUG Processing 185/664 atomic regions from SNP 55384 to 55985 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,344 DEBUG Processing 484/708 atomic regions from SNP 144957 to 145557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,372 DEBUG Processing 376/677 atomic regions from SNP 112678 to 113278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,414 DEBUG Processing 186/664 atomic regions from SNP 55685 to 56286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,578 DEBUG Processing 485/708 atomic regions from SNP 145257 to 145857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,582 DEBUG Processing 377/677 atomic regions from SNP 112978 to 113578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,622 DEBUG Processing 187/664 atomic regions from SNP 55986 to 56587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,797 DEBUG Processing 378/677 atomic regions from SNP 113278 to 113878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,803 DEBUG Processing 486/708 atomic regions from SNP 145557 to 146157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,832 DEBUG Processing 188/664 atomic regions from SNP 56287 to 56888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,011 DEBUG Processing 487/708 atomic regions from SNP 145857 to 146457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,030 DEBUG Processing 379/677 atomic regions from SNP 113578 to 114178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,044 DEBUG Processing 189/664 atomic regions from SNP 56588 to 57189 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,241 DEBUG Processing 488/708 atomic regions from SNP 146157 to 146757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,261 DEBUG Processing 190/664 atomic regions from SNP 56889 to 57490 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,269 DEBUG Processing 380/677 atomic regions from SNP 113878 to 114478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,480 DEBUG Processing 191/664 atomic regions from SNP 57190 to 57791 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,483 DEBUG Processing 489/708 atomic regions from SNP 146457 to 147057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,493 DEBUG Processing 381/677 atomic regions from SNP 114178 to 114778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,703 DEBUG Processing 192/664 atomic regions from SNP 57491 to 58092 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,713 DEBUG Processing 490/708 atomic regions from SNP 146757 to 147357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,715 DEBUG Processing 382/677 atomic regions from SNP 114478 to 115078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,916 DEBUG Processing 193/664 atomic regions from SNP 57792 to 58393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,929 DEBUG Processing 383/677 atomic regions from SNP 114778 to 115378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,931 DEBUG Processing 491/708 atomic regions from SNP 147057 to 147657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,134 DEBUG Processing 194/664 atomic regions from SNP 58093 to 58694 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,145 DEBUG Processing 384/677 atomic regions from SNP 115078 to 115678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,149 DEBUG Processing 492/708 atomic regions from SNP 147357 to 147957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,350 DEBUG Processing 195/664 atomic regions from SNP 58394 to 58995 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,359 DEBUG Processing 385/677 atomic regions from SNP 115378 to 115978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,384 DEBUG Processing 493/708 atomic regions from SNP 147657 to 148257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,618 DEBUG Processing 386/677 atomic regions from SNP 115678 to 116278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,620 DEBUG Processing 196/664 atomic regions from SNP 58695 to 59296 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,636 DEBUG Processing 494/708 atomic regions from SNP 147957 to 148557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,838 DEBUG Processing 387/677 atomic regions from SNP 115978 to 116578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,846 DEBUG Processing 197/664 atomic regions from SNP 58996 to 59597 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,870 DEBUG Processing 495/708 atomic regions from SNP 148257 to 148857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,145 DEBUG Processing 198/664 atomic regions from SNP 59297 to 59898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,150 DEBUG Processing 388/677 atomic regions from SNP 116278 to 116878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,195 DEBUG Processing 496/708 atomic regions from SNP 148557 to 149157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,358 DEBUG Processing 199/664 atomic regions from SNP 59598 to 60199 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,362 DEBUG Processing 389/677 atomic regions from SNP 116578 to 117178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,418 DEBUG Processing 497/708 atomic regions from SNP 148857 to 149457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,590 DEBUG Processing 390/677 atomic regions from SNP 116878 to 117478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,593 DEBUG Processing 200/664 atomic regions from SNP 59899 to 60500 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,688 DEBUG Processing 498/708 atomic regions from SNP 149157 to 149757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,882 DEBUG Processing 201/664 atomic regions from SNP 60200 to 60801 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,883 DEBUG Processing 391/677 atomic regions from SNP 117178 to 117778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,955 DEBUG Segmenting atomic regions: 2025-01-31 09:55:13,033 DEBUG Processing 1/599 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,037 DEBUG Processing 499/708 atomic regions from SNP 149457 to 150057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,168 DEBUG Processing 202/664 atomic regions from SNP 60501 to 61102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,172 DEBUG Processing 392/677 atomic regions from SNP 117478 to 118078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,321 DEBUG Processing 2/599 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,377 DEBUG Processing 500/708 atomic regions from SNP 149757 to 150357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,465 DEBUG Processing 203/664 atomic regions from SNP 60802 to 61403 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,473 DEBUG Processing 393/677 atomic regions from SNP 117778 to 118378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,655 DEBUG Processing 3/599 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,747 DEBUG Processing 501/708 atomic regions from SNP 150057 to 150657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,775 DEBUG Processing 204/664 atomic regions from SNP 61103 to 61704 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,801 DEBUG Processing 394/677 atomic regions from SNP 118078 to 118678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,969 DEBUG Processing 4/599 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,093 DEBUG Processing 205/664 atomic regions from SNP 61404 to 62005 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,107 DEBUG Processing 502/708 atomic regions from SNP 150357 to 150957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,134 DEBUG Processing 395/677 atomic regions from SNP 118378 to 118978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,300 DEBUG Processing 5/599 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,402 DEBUG Processing 206/664 atomic regions from SNP 61705 to 62306 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,470 DEBUG Processing 503/708 atomic regions from SNP 150657 to 151257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,496 DEBUG Processing 396/677 atomic regions from SNP 118678 to 119278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,643 DEBUG Processing 6/599 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,715 DEBUG Processing 207/664 atomic regions from SNP 62006 to 62607 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,786 DEBUG Processing 504/708 atomic regions from SNP 150957 to 151557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,804 DEBUG Processing 397/677 atomic regions from SNP 118978 to 119578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,928 DEBUG Processing 7/599 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,006 DEBUG Processing 208/664 atomic regions from SNP 62307 to 62908 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,094 DEBUG Processing 505/708 atomic regions from SNP 151257 to 151857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,118 DEBUG Processing 398/677 atomic regions from SNP 119278 to 119878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,230 DEBUG Processing 8/599 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,278 DEBUG Processing 209/664 atomic regions from SNP 62608 to 63209 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,330 DEBUG Processing 506/708 atomic regions from SNP 151557 to 152157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,363 DEBUG Processing 399/677 atomic regions from SNP 119578 to 120178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,506 DEBUG Processing 9/599 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,566 DEBUG Processing 210/664 atomic regions from SNP 62909 to 63510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,626 DEBUG Processing 400/677 atomic regions from SNP 119878 to 120478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,628 DEBUG Processing 507/708 atomic regions from SNP 151857 to 152457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,733 DEBUG Processing 10/599 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,858 DEBUG Processing 211/664 atomic regions from SNP 63210 to 63811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,928 DEBUG Processing 401/677 atomic regions from SNP 120178 to 120778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,943 DEBUG Processing 508/708 atomic regions from SNP 152157 to 152757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,022 DEBUG Processing 11/599 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,167 DEBUG Processing 212/664 atomic regions from SNP 63511 to 64112 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,294 DEBUG Processing 402/677 atomic regions from SNP 120478 to 121078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,295 DEBUG Processing 509/708 atomic regions from SNP 152457 to 153057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,386 DEBUG Processing 12/599 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,490 DEBUG Processing 213/664 atomic regions from SNP 63812 to 64413 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,625 DEBUG Processing 510/708 atomic regions from SNP 152757 to 153357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,660 DEBUG Processing 403/677 atomic regions from SNP 120778 to 121378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,703 DEBUG Processing 13/599 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,774 DEBUG Processing 214/664 atomic regions from SNP 64113 to 64714 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,941 DEBUG Processing 511/708 atomic regions from SNP 153057 to 153657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,009 DEBUG Processing 404/677 atomic regions from SNP 121078 to 121678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,014 DEBUG Processing 14/599 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,065 DEBUG Processing 215/664 atomic regions from SNP 64414 to 65015 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,283 DEBUG Processing 512/708 atomic regions from SNP 153357 to 153957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,351 DEBUG Processing 15/599 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,378 DEBUG Processing 216/664 atomic regions from SNP 64715 to 65316 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,381 DEBUG Processing 405/677 atomic regions from SNP 121378 to 121978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,611 DEBUG Processing 513/708 atomic regions from SNP 153657 to 154257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,668 DEBUG Processing 16/599 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,680 DEBUG Processing 217/664 atomic regions from SNP 65016 to 65617 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,729 DEBUG Processing 406/677 atomic regions from SNP 121678 to 122278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,922 DEBUG Processing 514/708 atomic regions from SNP 153957 to 154557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,967 DEBUG Processing 17/599 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,977 DEBUG Processing 218/664 atomic regions from SNP 65317 to 65918 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,029 DEBUG Processing 407/677 atomic regions from SNP 121978 to 122578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,171 DEBUG Processing 515/708 atomic regions from SNP 154257 to 154857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,205 DEBUG Processing 18/599 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,263 DEBUG Processing 219/664 atomic regions from SNP 65618 to 66219 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,291 DEBUG Processing 408/677 atomic regions from SNP 122278 to 122878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,445 DEBUG Processing 516/708 atomic regions from SNP 154557 to 155157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,516 DEBUG Processing 19/599 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,553 DEBUG Processing 220/664 atomic regions from SNP 65919 to 66520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,588 DEBUG Processing 409/677 atomic regions from SNP 122578 to 123178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,765 DEBUG Processing 517/708 atomic regions from SNP 154857 to 155457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,836 DEBUG Processing 20/599 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,847 DEBUG Processing 221/664 atomic regions from SNP 66220 to 66821 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,916 DEBUG Processing 410/677 atomic regions from SNP 122878 to 123478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,080 DEBUG Processing 518/708 atomic regions from SNP 155157 to 155757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,143 DEBUG Processing 222/664 atomic regions from SNP 66521 to 67122 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,145 DEBUG Processing 21/599 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,226 DEBUG Processing 411/677 atomic regions from SNP 123178 to 123778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,408 DEBUG Processing 519/708 atomic regions from SNP 155457 to 156057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,455 DEBUG Processing 223/664 atomic regions from SNP 66822 to 67423 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,484 DEBUG Processing 22/599 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,553 DEBUG Processing 412/677 atomic regions from SNP 123478 to 124078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,763 DEBUG Processing 520/708 atomic regions from SNP 155757 to 156357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,779 DEBUG Processing 224/664 atomic regions from SNP 67123 to 67724 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,838 DEBUG Processing 23/599 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,897 DEBUG Processing 413/677 atomic regions from SNP 123778 to 124378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,103 DEBUG Processing 225/664 atomic regions from SNP 67424 to 68025 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,126 DEBUG Processing 521/708 atomic regions from SNP 156057 to 156657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,185 DEBUG Processing 24/599 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,247 DEBUG Processing 414/677 atomic regions from SNP 124078 to 124678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,403 DEBUG Processing 226/664 atomic regions from SNP 67725 to 68326 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,466 DEBUG Processing 522/708 atomic regions from SNP 156357 to 156957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,513 DEBUG Processing 25/599 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,566 DEBUG Processing 415/677 atomic regions from SNP 124378 to 124978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,707 DEBUG Processing 227/664 atomic regions from SNP 68026 to 68627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,812 DEBUG Processing 523/708 atomic regions from SNP 156657 to 157257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,839 DEBUG Processing 26/599 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,890 DEBUG Processing 416/677 atomic regions from SNP 124678 to 125278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,989 DEBUG Processing 228/664 atomic regions from SNP 68327 to 68927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,127 DEBUG Processing 524/708 atomic regions from SNP 156957 to 157557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,155 DEBUG Processing 27/599 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,213 DEBUG Processing 417/677 atomic regions from SNP 124978 to 125578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,271 DEBUG Processing 229/664 atomic regions from SNP 68627 to 69227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,446 DEBUG Processing 525/708 atomic regions from SNP 157257 to 157857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,485 DEBUG Processing 28/599 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,554 DEBUG Processing 418/677 atomic regions from SNP 125278 to 125878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,604 DEBUG Processing 230/664 atomic regions from SNP 68927 to 69527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,826 DEBUG Processing 526/708 atomic regions from SNP 157557 to 158157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,883 DEBUG Processing 29/599 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,950 DEBUG Processing 419/677 atomic regions from SNP 125578 to 126178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,951 DEBUG Processing 231/664 atomic regions from SNP 69227 to 69827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,200 DEBUG Processing 527/708 atomic regions from SNP 157857 to 158457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,268 DEBUG Processing 30/599 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,275 DEBUG Processing 232/664 atomic regions from SNP 69527 to 70127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,294 DEBUG Processing 420/677 atomic regions from SNP 125878 to 126478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,519 DEBUG Processing 528/708 atomic regions from SNP 158157 to 158757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,586 DEBUG Processing 233/664 atomic regions from SNP 69827 to 70427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,601 DEBUG Processing 31/599 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,611 DEBUG Processing 421/677 atomic regions from SNP 126178 to 126778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,857 DEBUG Processing 529/708 atomic regions from SNP 158457 to 159057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,884 DEBUG Processing 234/664 atomic regions from SNP 70127 to 70727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,919 DEBUG Processing 32/599 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,923 DEBUG Processing 422/677 atomic regions from SNP 126478 to 127078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,192 DEBUG Processing 235/664 atomic regions from SNP 70427 to 71027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,198 DEBUG Processing 530/708 atomic regions from SNP 158757 to 159357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,256 DEBUG Processing 33/599 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,261 DEBUG Processing 423/677 atomic regions from SNP 126778 to 127378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,497 DEBUG Processing 236/664 atomic regions from SNP 70727 to 71327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,519 DEBUG Processing 531/708 atomic regions from SNP 159057 to 159657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,583 DEBUG Processing 424/677 atomic regions from SNP 127078 to 127678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,584 DEBUG Processing 34/599 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,792 DEBUG Processing 237/664 atomic regions from SNP 71027 to 71627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,845 DEBUG Processing 532/708 atomic regions from SNP 159357 to 159957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,904 DEBUG Processing 425/677 atomic regions from SNP 127378 to 127978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,928 DEBUG Processing 35/599 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,094 DEBUG Processing 238/664 atomic regions from SNP 71327 to 71927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,185 DEBUG Processing 533/708 atomic regions from SNP 159657 to 160257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,233 DEBUG Processing 426/677 atomic regions from SNP 127678 to 128278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,262 DEBUG Processing 36/599 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,324 DEBUG Processing 239/664 atomic regions from SNP 71627 to 72227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,457 DEBUG Processing 534/708 atomic regions from SNP 159957 to 160557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,544 DEBUG Processing 427/677 atomic regions from SNP 127978 to 128578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,560 DEBUG Processing 37/599 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,597 DEBUG Processing 240/664 atomic regions from SNP 71927 to 72527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,753 DEBUG Processing 535/708 atomic regions from SNP 160257 to 160857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,863 DEBUG Processing 428/677 atomic regions from SNP 128278 to 128878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,877 DEBUG Processing 38/599 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,886 DEBUG Processing 241/664 atomic regions from SNP 72227 to 72827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,059 DEBUG Processing 536/708 atomic regions from SNP 160557 to 161157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,163 DEBUG Processing 429/677 atomic regions from SNP 128578 to 129178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,184 DEBUG Processing 39/599 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,186 DEBUG Processing 242/664 atomic regions from SNP 72527 to 73127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,381 DEBUG Processing 537/708 atomic regions from SNP 160857 to 161457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,471 DEBUG Processing 243/664 atomic regions from SNP 72827 to 73427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,492 DEBUG Processing 430/677 atomic regions from SNP 128878 to 129478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,498 DEBUG Processing 40/599 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,645 DEBUG Processing 538/708 atomic regions from SNP 161157 to 161757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,713 DEBUG Processing 244/664 atomic regions from SNP 73127 to 73727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,770 DEBUG Processing 41/599 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,790 DEBUG Processing 431/677 atomic regions from SNP 129178 to 129778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,963 DEBUG Processing 539/708 atomic regions from SNP 161457 to 162057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,972 DEBUG Processing 245/664 atomic regions from SNP 73427 to 74027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,007 DEBUG Processing 42/599 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,032 DEBUG Processing 432/677 atomic regions from SNP 129478 to 130078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,186 DEBUG Processing 246/664 atomic regions from SNP 73727 to 74327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,199 DEBUG Processing 540/708 atomic regions from SNP 161757 to 162357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,212 DEBUG Processing 43/599 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,251 DEBUG Processing 433/677 atomic regions from SNP 129778 to 130378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,390 DEBUG Processing 247/664 atomic regions from SNP 74027 to 74627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,413 DEBUG Processing 44/599 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,427 DEBUG Processing 541/708 atomic regions from SNP 162057 to 162657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,459 DEBUG Processing 434/677 atomic regions from SNP 130078 to 130678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,592 DEBUG Processing 248/664 atomic regions from SNP 74327 to 74927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,610 DEBUG Processing 45/599 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,641 DEBUG Processing 542/708 atomic regions from SNP 162357 to 162957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,666 DEBUG Processing 435/677 atomic regions from SNP 130378 to 130978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,794 DEBUG Processing 249/664 atomic regions from SNP 74627 to 75227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,802 DEBUG Processing 46/599 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,863 DEBUG Processing 543/708 atomic regions from SNP 162657 to 163257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,870 DEBUG Processing 436/677 atomic regions from SNP 130678 to 131278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,990 DEBUG Processing 47/599 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,991 DEBUG Processing 250/664 atomic regions from SNP 74927 to 75527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,101 DEBUG Processing 437/677 atomic regions from SNP 130978 to 131578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,111 DEBUG Processing 544/708 atomic regions from SNP 162957 to 163557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,183 DEBUG Processing 48/599 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,191 DEBUG Processing 251/664 atomic regions from SNP 75227 to 75827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,314 DEBUG Processing 438/677 atomic regions from SNP 131278 to 131878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,340 DEBUG Processing 545/708 atomic regions from SNP 163257 to 163857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,378 DEBUG Processing 49/599 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,400 DEBUG Processing 252/664 atomic regions from SNP 75527 to 76127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,520 DEBUG Processing 439/677 atomic regions from SNP 131578 to 132178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,572 DEBUG Processing 50/599 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,576 DEBUG Processing 546/708 atomic regions from SNP 163557 to 164157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,604 DEBUG Processing 253/664 atomic regions from SNP 75827 to 76427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,723 DEBUG Processing 440/677 atomic regions from SNP 131878 to 132478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,768 DEBUG Processing 51/599 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,790 DEBUG Processing 547/708 atomic regions from SNP 163857 to 164457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,806 DEBUG Processing 254/664 atomic regions from SNP 76127 to 76727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,931 DEBUG Processing 441/677 atomic regions from SNP 132178 to 132778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,970 DEBUG Processing 52/599 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,012 DEBUG Processing 255/664 atomic regions from SNP 76427 to 77027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,024 DEBUG Processing 548/708 atomic regions from SNP 164157 to 164757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,139 DEBUG Processing 442/677 atomic regions from SNP 132478 to 133078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,185 DEBUG Processing 53/599 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,223 DEBUG Processing 256/664 atomic regions from SNP 76727 to 77327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,254 DEBUG Processing 549/708 atomic regions from SNP 164457 to 165057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,341 DEBUG Processing 443/677 atomic regions from SNP 132778 to 133378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,418 DEBUG Processing 54/599 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,430 DEBUG Processing 257/664 atomic regions from SNP 77027 to 77627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,483 DEBUG Processing 550/708 atomic regions from SNP 164757 to 165357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,545 DEBUG Processing 444/677 atomic regions from SNP 133078 to 133678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,632 DEBUG Processing 258/664 atomic regions from SNP 77327 to 77927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,642 DEBUG Processing 55/599 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,692 DEBUG Segmenting atomic regions: 2025-01-31 09:55:28,707 DEBUG Processing 551/708 atomic regions from SNP 165057 to 165657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,766 DEBUG Processing 445/677 atomic regions from SNP 133378 to 133978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,772 DEBUG Processing 1/562 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,833 DEBUG Processing 259/664 atomic regions from SNP 77627 to 78227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,842 DEBUG Processing 56/599 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,921 DEBUG Processing 552/708 atomic regions from SNP 165357 to 165957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,970 DEBUG Processing 2/562 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,003 DEBUG Processing 446/677 atomic regions from SNP 133678 to 134278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,041 DEBUG Processing 57/599 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,044 DEBUG Processing 260/664 atomic regions from SNP 77927 to 78527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,132 DEBUG Processing 553/708 atomic regions from SNP 165657 to 166257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,184 DEBUG Processing 3/562 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,214 DEBUG Processing 447/677 atomic regions from SNP 133978 to 134578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,251 DEBUG Processing 58/599 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,274 DEBUG Processing 261/664 atomic regions from SNP 78227 to 78827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,344 DEBUG Processing 554/708 atomic regions from SNP 165957 to 166557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,402 DEBUG Processing 4/562 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,424 DEBUG Processing 448/677 atomic regions from SNP 134278 to 134878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,449 DEBUG Processing 59/599 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,505 DEBUG Processing 262/664 atomic regions from SNP 78527 to 79127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,567 DEBUG Processing 555/708 atomic regions from SNP 166257 to 166857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,614 DEBUG Processing 5/562 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,634 DEBUG Processing 449/677 atomic regions from SNP 134578 to 135178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,648 DEBUG Processing 60/599 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,721 DEBUG Processing 263/664 atomic regions from SNP 78827 to 79427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,810 DEBUG Processing 556/708 atomic regions from SNP 166557 to 167157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,828 DEBUG Processing 6/562 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,851 DEBUG Processing 61/599 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,868 DEBUG Processing 450/677 atomic regions from SNP 134878 to 135478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,927 DEBUG Processing 264/664 atomic regions from SNP 79127 to 79727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,050 DEBUG Processing 557/708 atomic regions from SNP 166857 to 167457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,050 DEBUG Processing 7/562 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,053 DEBUG Processing 62/599 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,114 DEBUG Processing 451/677 atomic regions from SNP 135178 to 135778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,133 DEBUG Processing 265/664 atomic regions from SNP 79427 to 80027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,249 DEBUG Processing 63/599 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,280 DEBUG Processing 8/562 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,289 DEBUG Processing 558/708 atomic regions from SNP 167157 to 167757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,331 DEBUG Processing 452/677 atomic regions from SNP 135478 to 136078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,357 DEBUG Processing 266/664 atomic regions from SNP 79727 to 80327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,457 DEBUG Processing 64/599 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,546 DEBUG Processing 9/562 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,569 DEBUG Processing 559/708 atomic regions from SNP 167457 to 168057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,575 DEBUG Processing 453/677 atomic regions from SNP 135778 to 136378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,584 DEBUG Processing 267/664 atomic regions from SNP 80027 to 80627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,647 DEBUG Processing 65/599 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,794 DEBUG Processing 10/562 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,826 DEBUG Processing 454/677 atomic regions from SNP 136078 to 136678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,828 DEBUG Processing 268/664 atomic regions from SNP 80327 to 80927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,840 DEBUG Processing 560/708 atomic regions from SNP 167757 to 168357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,890 DEBUG Processing 66/599 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,096 DEBUG Processing 11/562 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,120 DEBUG Processing 269/664 atomic regions from SNP 80627 to 81227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,129 DEBUG Processing 455/677 atomic regions from SNP 136378 to 136978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,196 DEBUG Processing 561/708 atomic regions from SNP 168057 to 168657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,215 DEBUG Processing 67/599 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,416 DEBUG Processing 270/664 atomic regions from SNP 80927 to 81527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,423 DEBUG Processing 12/562 atomic regions from SNP 3311 to 3911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,464 DEBUG Processing 456/677 atomic regions from SNP 136678 to 137278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,550 DEBUG Processing 68/599 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,572 DEBUG Processing 562/708 atomic regions from SNP 168357 to 168957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,711 DEBUG Processing 271/664 atomic regions from SNP 81227 to 81827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,738 DEBUG Processing 13/562 atomic regions from SNP 3611 to 4211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,795 DEBUG Processing 457/677 atomic regions from SNP 136978 to 137578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,866 DEBUG Processing 69/599 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,934 DEBUG Processing 563/708 atomic regions from SNP 168657 to 169257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,972 DEBUG Processing 272/664 atomic regions from SNP 81527 to 82127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,981 DEBUG Processing 14/562 atomic regions from SNP 3911 to 4511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,030 DEBUG Processing 458/677 atomic regions from SNP 137278 to 137878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,073 DEBUG Processing 70/599 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,168 DEBUG Processing 564/708 atomic regions from SNP 168957 to 169557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,199 DEBUG Processing 15/562 atomic regions from SNP 4211 to 4811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,207 DEBUG Processing 273/664 atomic regions from SNP 81827 to 82427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,254 DEBUG Processing 459/677 atomic regions from SNP 137578 to 138178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,282 DEBUG Processing 71/599 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,393 DEBUG Processing 16/562 atomic regions from SNP 4511 to 5111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,400 DEBUG Processing 565/708 atomic regions from SNP 169257 to 169857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,412 DEBUG Processing 274/664 atomic regions from SNP 82127 to 82727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,463 DEBUG Processing 460/677 atomic regions from SNP 137878 to 138478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,484 DEBUG Processing 72/599 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,587 DEBUG Processing 17/562 atomic regions from SNP 4811 to 5411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,620 DEBUG Processing 275/664 atomic regions from SNP 82427 to 83027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,635 DEBUG Processing 566/708 atomic regions from SNP 169557 to 170157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,680 DEBUG Processing 461/677 atomic regions from SNP 138178 to 138778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,685 DEBUG Processing 73/599 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,773 DEBUG Processing 18/562 atomic regions from SNP 5111 to 5711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,824 DEBUG Processing 276/664 atomic regions from SNP 82727 to 83327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,879 DEBUG Processing 567/708 atomic regions from SNP 169857 to 170457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,888 DEBUG Processing 74/599 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,916 DEBUG Processing 462/677 atomic regions from SNP 138478 to 139078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,961 DEBUG Processing 19/562 atomic regions from SNP 5411 to 6011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,024 DEBUG Processing 277/664 atomic regions from SNP 83027 to 83627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,094 DEBUG Processing 75/599 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,127 DEBUG Processing 568/708 atomic regions from SNP 170157 to 170757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,152 DEBUG Processing 463/677 atomic regions from SNP 138778 to 139378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,157 DEBUG Processing 20/562 atomic regions from SNP 5711 to 6311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,222 DEBUG Processing 278/664 atomic regions from SNP 83327 to 83927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,296 DEBUG Processing 76/599 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,358 DEBUG Processing 21/562 atomic regions from SNP 6011 to 6611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,366 DEBUG Processing 464/677 atomic regions from SNP 139078 to 139678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,370 DEBUG Processing 569/708 atomic regions from SNP 170457 to 171057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,445 DEBUG Processing 279/664 atomic regions from SNP 83627 to 84227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,499 DEBUG Processing 77/599 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,590 DEBUG Processing 22/562 atomic regions from SNP 6311 to 6911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,610 DEBUG Processing 465/677 atomic regions from SNP 139378 to 139978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,617 DEBUG Processing 570/708 atomic regions from SNP 170757 to 171357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,731 DEBUG Processing 78/599 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,735 DEBUG Processing 280/664 atomic regions from SNP 83927 to 84527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,796 DEBUG Processing 23/562 atomic regions from SNP 6611 to 7211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,823 DEBUG Processing 466/677 atomic regions from SNP 139678 to 140278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,833 DEBUG Processing 571/708 atomic regions from SNP 171057 to 171657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,933 DEBUG Processing 79/599 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,981 DEBUG Processing 281/664 atomic regions from SNP 84227 to 84827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,995 DEBUG Processing 24/562 atomic regions from SNP 6911 to 7511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,031 DEBUG Processing 467/677 atomic regions from SNP 139978 to 140578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,042 DEBUG Processing 572/708 atomic regions from SNP 171357 to 171957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,132 DEBUG Processing 80/599 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,189 DEBUG Processing 25/562 atomic regions from SNP 7211 to 7811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,211 DEBUG Processing 282/664 atomic regions from SNP 84527 to 85127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,240 DEBUG Processing 468/677 atomic regions from SNP 140278 to 140878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,252 DEBUG Processing 573/708 atomic regions from SNP 171657 to 172257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,331 DEBUG Processing 81/599 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,386 DEBUG Processing 26/562 atomic regions from SNP 7511 to 8111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,445 DEBUG Processing 283/664 atomic regions from SNP 84827 to 85427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,448 DEBUG Processing 469/677 atomic regions from SNP 140578 to 141178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,465 DEBUG Processing 574/708 atomic regions from SNP 171957 to 172557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,534 DEBUG Processing 82/599 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,587 DEBUG Processing 27/562 atomic regions from SNP 7811 to 8411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,661 DEBUG Processing 284/664 atomic regions from SNP 85127 to 85727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,662 DEBUG Processing 470/677 atomic regions from SNP 140878 to 141478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,681 DEBUG Processing 575/708 atomic regions from SNP 172257 to 172857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,740 DEBUG Processing 83/599 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,783 DEBUG Processing 28/562 atomic regions from SNP 8111 to 8711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,867 DEBUG Processing 285/664 atomic regions from SNP 85427 to 86027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,868 DEBUG Processing 471/677 atomic regions from SNP 141178 to 141778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,910 DEBUG Processing 576/708 atomic regions from SNP 172557 to 173157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,940 DEBUG Processing 84/599 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,976 DEBUG Processing 29/562 atomic regions from SNP 8411 to 9011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,070 DEBUG Processing 286/664 atomic regions from SNP 85727 to 86327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,075 DEBUG Processing 472/677 atomic regions from SNP 141478 to 142078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,144 DEBUG Processing 85/599 atomic regions from SNP 25284 to 25885 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,150 DEBUG Processing 577/708 atomic regions from SNP 172857 to 173457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,172 DEBUG Processing 30/562 atomic regions from SNP 8711 to 9311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,268 DEBUG Processing 287/664 atomic regions from SNP 86027 to 86627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,273 DEBUG Processing 473/677 atomic regions from SNP 141778 to 142378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,345 DEBUG Processing 86/599 atomic regions from SNP 25585 to 26186 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,369 DEBUG Processing 31/562 atomic regions from SNP 9011 to 9611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,388 DEBUG Processing 578/708 atomic regions from SNP 173157 to 173757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,465 DEBUG Processing 288/664 atomic regions from SNP 86327 to 86927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,472 DEBUG Processing 474/677 atomic regions from SNP 142078 to 142678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,544 DEBUG Processing 87/599 atomic regions from SNP 25886 to 26487 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,581 DEBUG Processing 32/562 atomic regions from SNP 9311 to 9911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,628 DEBUG Processing 579/708 atomic regions from SNP 173457 to 174057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,663 DEBUG Processing 289/664 atomic regions from SNP 86627 to 87227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,678 DEBUG Processing 475/677 atomic regions from SNP 142378 to 142978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,743 DEBUG Processing 88/599 atomic regions from SNP 26187 to 26788 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,808 DEBUG Processing 33/562 atomic regions from SNP 9611 to 10211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,854 DEBUG Processing 580/708 atomic regions from SNP 173757 to 174357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,868 DEBUG Processing 290/664 atomic regions from SNP 86927 to 87527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,886 DEBUG Processing 476/677 atomic regions from SNP 142678 to 143278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,938 DEBUG Processing 89/599 atomic regions from SNP 26488 to 27089 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,029 DEBUG Processing 34/562 atomic regions from SNP 9911 to 10511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,075 DEBUG Processing 291/664 atomic regions from SNP 87227 to 87827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,089 DEBUG Processing 581/708 atomic regions from SNP 174057 to 174657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,095 DEBUG Processing 477/677 atomic regions from SNP 142978 to 143578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,134 DEBUG Processing 90/599 atomic regions from SNP 26789 to 27390 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,221 DEBUG Processing 35/562 atomic regions from SNP 10211 to 10811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,286 DEBUG Processing 292/664 atomic regions from SNP 87527 to 88127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,302 DEBUG Processing 478/677 atomic regions from SNP 143278 to 143878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,325 DEBUG Processing 91/599 atomic regions from SNP 27090 to 27691 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,335 DEBUG Processing 582/708 atomic regions from SNP 174357 to 174957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,404 DEBUG Processing 36/562 atomic regions from SNP 10511 to 11111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,495 DEBUG Processing 293/664 atomic regions from SNP 87827 to 88427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,506 DEBUG Processing 479/677 atomic regions from SNP 143578 to 144178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,521 DEBUG Processing 92/599 atomic regions from SNP 27391 to 27992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,574 DEBUG Processing 583/708 atomic regions from SNP 174657 to 175257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,594 DEBUG Processing 37/562 atomic regions from SNP 10811 to 11411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,707 DEBUG Processing 294/664 atomic regions from SNP 88127 to 88727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,722 DEBUG Processing 93/599 atomic regions from SNP 27692 to 28293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,725 DEBUG Processing 480/677 atomic regions from SNP 143878 to 144478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,799 DEBUG Processing 38/562 atomic regions from SNP 11111 to 11711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,825 DEBUG Processing 584/708 atomic regions from SNP 174957 to 175557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,919 DEBUG Processing 295/664 atomic regions from SNP 88427 to 89027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,928 DEBUG Processing 94/599 atomic regions from SNP 27993 to 28594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,938 DEBUG Processing 481/677 atomic regions from SNP 144178 to 144778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,992 DEBUG Processing 39/562 atomic regions from SNP 11411 to 12011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,077 DEBUG Processing 585/708 atomic regions from SNP 175257 to 175857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,137 DEBUG Processing 296/664 atomic regions from SNP 88727 to 89327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,154 DEBUG Processing 95/599 atomic regions from SNP 28294 to 28895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,163 DEBUG Processing 482/677 atomic regions from SNP 144478 to 145078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,191 DEBUG Processing 40/562 atomic regions from SNP 11711 to 12311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,317 DEBUG Processing 586/708 atomic regions from SNP 175557 to 176157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,382 DEBUG Processing 297/664 atomic regions from SNP 89027 to 89627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,412 DEBUG Processing 96/599 atomic regions from SNP 28595 to 29196 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,428 DEBUG Processing 41/562 atomic regions from SNP 12011 to 12611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,433 DEBUG Processing 483/677 atomic regions from SNP 144778 to 145378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,571 DEBUG Processing 587/708 atomic regions from SNP 175857 to 176457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,619 DEBUG Processing 298/664 atomic regions from SNP 89327 to 89927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,682 DEBUG Processing 97/599 atomic regions from SNP 28896 to 29497 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,689 DEBUG Processing 42/562 atomic regions from SNP 12311 to 12911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,704 DEBUG Processing 484/677 atomic regions from SNP 145078 to 145678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,856 DEBUG Processing 299/664 atomic regions from SNP 89627 to 90227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,864 DEBUG Processing 588/708 atomic regions from SNP 176157 to 176757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,952 DEBUG Processing 98/599 atomic regions from SNP 29197 to 29798 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,959 DEBUG Processing 43/562 atomic regions from SNP 12611 to 13211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,984 DEBUG Processing 485/677 atomic regions from SNP 145378 to 145978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,110 DEBUG Processing 300/664 atomic regions from SNP 89927 to 90527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,151 DEBUG Processing 589/708 atomic regions from SNP 176457 to 177057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,244 DEBUG Processing 99/599 atomic regions from SNP 29498 to 30099 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,281 DEBUG Processing 44/562 atomic regions from SNP 12911 to 13511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,289 DEBUG Processing 486/677 atomic regions from SNP 145678 to 146278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,361 DEBUG Processing 301/664 atomic regions from SNP 90227 to 90827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,456 DEBUG Processing 590/708 atomic regions from SNP 176757 to 177357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,540 DEBUG Processing 100/599 atomic regions from SNP 29799 to 30400 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,582 DEBUG Processing 45/562 atomic regions from SNP 13211 to 13811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,591 DEBUG Processing 487/677 atomic regions from SNP 145978 to 146578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,618 DEBUG Processing 302/664 atomic regions from SNP 90527 to 91127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,716 DEBUG Processing 591/708 atomic regions from SNP 177057 to 177657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,847 DEBUG Processing 101/599 atomic regions from SNP 30100 to 30701 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,896 DEBUG Processing 46/562 atomic regions from SNP 13511 to 14111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,898 DEBUG Processing 488/677 atomic regions from SNP 146278 to 146878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,916 DEBUG Processing 303/664 atomic regions from SNP 90827 to 91427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,004 DEBUG Processing 592/708 atomic regions from SNP 177357 to 177957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,116 DEBUG Processing 102/599 atomic regions from SNP 30401 to 31002 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,210 DEBUG Processing 47/562 atomic regions from SNP 13811 to 14411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,219 DEBUG Processing 489/677 atomic regions from SNP 146578 to 147178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,253 DEBUG Processing 304/664 atomic regions from SNP 91127 to 91727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,338 DEBUG Processing 593/708 atomic regions from SNP 177657 to 178257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,381 DEBUG Processing 103/599 atomic regions from SNP 30702 to 31303 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,525 DEBUG Processing 48/562 atomic regions from SNP 14111 to 14711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,542 DEBUG Processing 490/677 atomic regions from SNP 146878 to 147478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,560 DEBUG Processing 305/664 atomic regions from SNP 91427 to 92027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,678 DEBUG Processing 104/599 atomic regions from SNP 31003 to 31604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,692 DEBUG Processing 594/708 atomic regions from SNP 177957 to 178557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,840 DEBUG Processing 306/664 atomic regions from SNP 91727 to 92327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,853 DEBUG Processing 491/677 atomic regions from SNP 147178 to 147778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,857 DEBUG Processing 49/562 atomic regions from SNP 14411 to 15011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,970 DEBUG Processing 105/599 atomic regions from SNP 31304 to 31905 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,024 DEBUG Processing 595/708 atomic regions from SNP 178257 to 178857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,117 DEBUG Processing 307/664 atomic regions from SNP 92027 to 92627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,175 DEBUG Processing 492/677 atomic regions from SNP 147478 to 148078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,197 DEBUG Processing 50/562 atomic regions from SNP 14711 to 15311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,285 DEBUG Processing 106/599 atomic regions from SNP 31605 to 32206 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,335 DEBUG Processing 596/708 atomic regions from SNP 178557 to 179157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,389 DEBUG Processing 308/664 atomic regions from SNP 92327 to 92927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,489 DEBUG Processing 51/562 atomic regions from SNP 15011 to 15611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,490 DEBUG Processing 493/677 atomic regions from SNP 147778 to 148378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,603 DEBUG Processing 107/599 atomic regions from SNP 31906 to 32507 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,638 DEBUG Processing 597/708 atomic regions from SNP 178857 to 179457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,653 DEBUG Processing 309/664 atomic regions from SNP 92627 to 93227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,805 DEBUG Processing 52/562 atomic regions from SNP 15311 to 15911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,807 DEBUG Processing 494/677 atomic regions from SNP 148078 to 148678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,930 DEBUG Processing 108/599 atomic regions from SNP 32207 to 32808 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,940 DEBUG Processing 310/664 atomic regions from SNP 92927 to 93527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,951 DEBUG Processing 598/708 atomic regions from SNP 179157 to 179757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,107 DEBUG Processing 53/562 atomic regions from SNP 15611 to 16211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,120 DEBUG Processing 495/677 atomic regions from SNP 148378 to 148978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,229 DEBUG Processing 311/664 atomic regions from SNP 93227 to 93827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,239 DEBUG Processing 109/599 atomic regions from SNP 32508 to 33109 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,262 DEBUG Processing 599/708 atomic regions from SNP 179457 to 180057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,404 DEBUG Processing 54/562 atomic regions from SNP 15911 to 16511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,431 DEBUG Processing 496/677 atomic regions from SNP 148678 to 149278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,520 DEBUG Processing 312/664 atomic regions from SNP 93527 to 94127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,547 DEBUG Processing 110/599 atomic regions from SNP 32809 to 33410 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,577 DEBUG Processing 600/708 atomic regions from SNP 179757 to 180357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,707 DEBUG Processing 55/562 atomic regions from SNP 16211 to 16811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,734 DEBUG Processing 497/677 atomic regions from SNP 148978 to 149578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,812 DEBUG Processing 313/664 atomic regions from SNP 93827 to 94427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,858 DEBUG Processing 111/599 atomic regions from SNP 33110 to 33711 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,889 DEBUG Processing 601/708 atomic regions from SNP 180057 to 180657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,997 DEBUG Processing 56/562 atomic regions from SNP 16511 to 17111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,047 DEBUG Processing 498/677 atomic regions from SNP 149278 to 149878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,073 DEBUG Processing 314/664 atomic regions from SNP 94127 to 94727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,101 DEBUG Processing 112/599 atomic regions from SNP 33411 to 34012 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,135 DEBUG Processing 602/708 atomic regions from SNP 180357 to 180957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,192 DEBUG Processing 57/562 atomic regions from SNP 16811 to 17411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,273 DEBUG Processing 499/677 atomic regions from SNP 149578 to 150178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,307 DEBUG Processing 315/664 atomic regions from SNP 94427 to 95027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,325 DEBUG Processing 113/599 atomic regions from SNP 33712 to 34313 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,362 DEBUG Processing 603/708 atomic regions from SNP 180657 to 181257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,385 DEBUG Processing 58/562 atomic regions from SNP 17111 to 17711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,478 DEBUG Processing 500/677 atomic regions from SNP 149878 to 150478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,515 DEBUG Processing 316/664 atomic regions from SNP 94727 to 95327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,531 DEBUG Processing 114/599 atomic regions from SNP 34013 to 34614 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,579 DEBUG Processing 604/708 atomic regions from SNP 180957 to 181557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,583 DEBUG Processing 59/562 atomic regions from SNP 17411 to 18011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,681 DEBUG Processing 501/677 atomic regions from SNP 150178 to 150778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,720 DEBUG Processing 317/664 atomic regions from SNP 95027 to 95627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,735 DEBUG Processing 115/599 atomic regions from SNP 34314 to 34915 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,795 DEBUG Processing 60/562 atomic regions from SNP 17711 to 18311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,797 DEBUG Processing 605/708 atomic regions from SNP 181257 to 181857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,885 DEBUG Processing 502/677 atomic regions from SNP 150478 to 151078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,926 DEBUG Processing 318/664 atomic regions from SNP 95327 to 95927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,938 DEBUG Processing 116/599 atomic regions from SNP 34615 to 35216 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,012 DEBUG Processing 61/562 atomic regions from SNP 18011 to 18611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,019 DEBUG Processing 606/708 atomic regions from SNP 181557 to 182157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,096 DEBUG Processing 503/677 atomic regions from SNP 150778 to 151378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,133 DEBUG Processing 319/664 atomic regions from SNP 95627 to 96227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,147 DEBUG Processing 117/599 atomic regions from SNP 34916 to 35517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,251 DEBUG Processing 62/562 atomic regions from SNP 18311 to 18911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,272 DEBUG Processing 607/708 atomic regions from SNP 181857 to 182457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,338 DEBUG Processing 504/677 atomic regions from SNP 151078 to 151678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,360 DEBUG Processing 118/599 atomic regions from SNP 35217 to 35818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,361 DEBUG Processing 320/664 atomic regions from SNP 95927 to 96527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,473 DEBUG Processing 63/562 atomic regions from SNP 18611 to 19211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,514 DEBUG Processing 608/708 atomic regions from SNP 182157 to 182757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,559 DEBUG Processing 505/677 atomic regions from SNP 151378 to 151978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,588 DEBUG Processing 119/599 atomic regions from SNP 35518 to 36119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,590 DEBUG Processing 321/664 atomic regions from SNP 96227 to 96827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,699 DEBUG Processing 64/562 atomic regions from SNP 18911 to 19511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,740 DEBUG Processing 609/708 atomic regions from SNP 182457 to 183057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,783 DEBUG Processing 506/677 atomic regions from SNP 151678 to 152278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,800 DEBUG Processing 120/599 atomic regions from SNP 35819 to 36420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,804 DEBUG Processing 322/664 atomic regions from SNP 96527 to 97127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,906 DEBUG Processing 65/562 atomic regions from SNP 19211 to 19811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,947 DEBUG Processing 610/708 atomic regions from SNP 182757 to 183357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,009 DEBUG Processing 121/599 atomic regions from SNP 36120 to 36721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,012 DEBUG Processing 323/664 atomic regions from SNP 96827 to 97427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,025 DEBUG Processing 507/677 atomic regions from SNP 151978 to 152578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,129 DEBUG Processing 66/562 atomic regions from SNP 19511 to 20111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,170 DEBUG Processing 611/708 atomic regions from SNP 183057 to 183657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,228 DEBUG Processing 122/599 atomic regions from SNP 36421 to 37022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,231 DEBUG Processing 324/664 atomic regions from SNP 97127 to 97727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,256 DEBUG Processing 508/677 atomic regions from SNP 152278 to 152878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,358 DEBUG Processing 67/562 atomic regions from SNP 19811 to 20411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,433 DEBUG Processing 612/708 atomic regions from SNP 183357 to 183957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,463 DEBUG Processing 123/599 atomic regions from SNP 36722 to 37323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,469 DEBUG Processing 325/664 atomic regions from SNP 97427 to 98027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,488 DEBUG Processing 509/677 atomic regions from SNP 152578 to 153178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,578 DEBUG Processing 68/562 atomic regions from SNP 20111 to 20711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,722 DEBUG Processing 613/708 atomic regions from SNP 183657 to 184257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,723 DEBUG Processing 124/599 atomic regions from SNP 37023 to 37624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,731 DEBUG Processing 326/664 atomic regions from SNP 97727 to 98327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,766 DEBUG Processing 510/677 atomic regions from SNP 152878 to 153478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,790 DEBUG Processing 69/562 atomic regions from SNP 20411 to 21011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,977 DEBUG Processing 125/599 atomic regions from SNP 37324 to 37925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,991 DEBUG Processing 327/664 atomic regions from SNP 98027 to 98627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,000 DEBUG Processing 614/708 atomic regions from SNP 183957 to 184557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,040 DEBUG Processing 70/562 atomic regions from SNP 20711 to 21311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,044 DEBUG Processing 511/677 atomic regions from SNP 153178 to 153778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,210 DEBUG Processing 126/599 atomic regions from SNP 37625 to 38226 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,224 DEBUG Processing 328/664 atomic regions from SNP 98327 to 98927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,278 DEBUG Processing 615/708 atomic regions from SNP 184257 to 184857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,288 DEBUG Processing 71/562 atomic regions from SNP 21011 to 21611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,312 DEBUG Processing 512/677 atomic regions from SNP 153478 to 154078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,412 DEBUG Processing 127/599 atomic regions from SNP 37926 to 38527 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,424 DEBUG Processing 329/664 atomic regions from SNP 98627 to 99227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,554 DEBUG Processing 72/562 atomic regions from SNP 21311 to 21911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,555 DEBUG Processing 616/708 atomic regions from SNP 184557 to 185157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,584 DEBUG Processing 513/677 atomic regions from SNP 153778 to 154378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,654 DEBUG Processing 128/599 atomic regions from SNP 38227 to 38828 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,667 DEBUG Processing 330/664 atomic regions from SNP 98927 to 99527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,772 DEBUG Processing 73/562 atomic regions from SNP 21611 to 22211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,815 DEBUG Processing 617/708 atomic regions from SNP 184857 to 185457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,858 DEBUG Processing 514/677 atomic regions from SNP 154078 to 154678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,902 DEBUG Processing 129/599 atomic regions from SNP 38528 to 39129 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,918 DEBUG Processing 331/664 atomic regions from SNP 99227 to 99827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,012 DEBUG Processing 74/562 atomic regions from SNP 21911 to 22511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,092 DEBUG Processing 618/708 atomic regions from SNP 185157 to 185757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,165 DEBUG Processing 515/677 atomic regions from SNP 154378 to 154978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,169 DEBUG Processing 130/599 atomic regions from SNP 38829 to 39430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,178 DEBUG Processing 332/664 atomic regions from SNP 99527 to 100127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,293 DEBUG Processing 75/562 atomic regions from SNP 22211 to 22811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,351 DEBUG Processing 619/708 atomic regions from SNP 185457 to 186057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,390 DEBUG Processing 131/599 atomic regions from SNP 39130 to 39731 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,408 DEBUG Processing 516/677 atomic regions from SNP 154678 to 155278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,409 DEBUG Processing 333/664 atomic regions from SNP 99827 to 100427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,500 DEBUG Processing 76/562 atomic regions from SNP 22511 to 23111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,578 DEBUG Processing 620/708 atomic regions from SNP 185757 to 186357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,588 DEBUG Processing 132/599 atomic regions from SNP 39431 to 40032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,611 DEBUG Processing 517/677 atomic regions from SNP 154978 to 155578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,612 DEBUG Processing 334/664 atomic regions from SNP 100127 to 100727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,687 DEBUG Processing 77/562 atomic regions from SNP 22811 to 23411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,786 DEBUG Processing 133/599 atomic regions from SNP 39732 to 40333 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,810 DEBUG Processing 621/708 atomic regions from SNP 186057 to 186657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,810 DEBUG Processing 335/664 atomic regions from SNP 100427 to 101027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,828 DEBUG Processing 518/677 atomic regions from SNP 155278 to 155878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,876 DEBUG Processing 78/562 atomic regions from SNP 23111 to 23711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,979 DEBUG Processing 134/599 atomic regions from SNP 40033 to 40634 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,010 DEBUG Processing 336/664 atomic regions from SNP 100727 to 101327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,018 DEBUG Processing 622/708 atomic regions from SNP 186357 to 186957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,053 DEBUG Processing 519/677 atomic regions from SNP 155578 to 156178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,062 DEBUG Processing 79/562 atomic regions from SNP 23411 to 24011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,169 DEBUG Processing 135/599 atomic regions from SNP 40334 to 40935 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,224 DEBUG Processing 337/664 atomic regions from SNP 101027 to 101627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,228 DEBUG Processing 623/708 atomic regions from SNP 186657 to 187257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,255 DEBUG Processing 80/562 atomic regions from SNP 23711 to 24311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,263 DEBUG Processing 520/677 atomic regions from SNP 155878 to 156478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,358 DEBUG Processing 136/599 atomic regions from SNP 40635 to 41236 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,432 DEBUG Processing 338/664 atomic regions from SNP 101327 to 101927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,441 DEBUG Processing 624/708 atomic regions from SNP 186957 to 187557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,449 DEBUG Processing 81/562 atomic regions from SNP 24011 to 24611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,468 DEBUG Processing 521/677 atomic regions from SNP 156178 to 156778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,554 DEBUG Processing 137/599 atomic regions from SNP 40936 to 41537 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,641 DEBUG Processing 339/664 atomic regions from SNP 101627 to 102227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,644 DEBUG Processing 82/562 atomic regions from SNP 24311 to 24911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,660 DEBUG Processing 625/708 atomic regions from SNP 187257 to 187857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,675 DEBUG Processing 522/677 atomic regions from SNP 156478 to 157078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,748 DEBUG Processing 138/599 atomic regions from SNP 41237 to 41838 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,842 DEBUG Processing 340/664 atomic regions from SNP 101927 to 102527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,851 DEBUG Processing 83/562 atomic regions from SNP 24611 to 25211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,882 DEBUG Processing 523/677 atomic regions from SNP 156778 to 157378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,890 DEBUG Processing 626/708 atomic regions from SNP 187557 to 188157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,951 DEBUG Processing 139/599 atomic regions from SNP 41538 to 42139 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,050 DEBUG Processing 341/664 atomic regions from SNP 102227 to 102827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,084 DEBUG Processing 84/562 atomic regions from SNP 24911 to 25511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,100 DEBUG Processing 524/677 atomic regions from SNP 157078 to 157678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,112 DEBUG Processing 627/708 atomic regions from SNP 187857 to 188457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,159 DEBUG Processing 140/599 atomic regions from SNP 41839 to 42440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,254 DEBUG Processing 342/664 atomic regions from SNP 102527 to 103127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,306 DEBUG Processing 85/562 atomic regions from SNP 25211 to 25811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,326 DEBUG Processing 525/677 atomic regions from SNP 157378 to 157978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,339 DEBUG Processing 628/708 atomic regions from SNP 188157 to 188757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,369 DEBUG Processing 141/599 atomic regions from SNP 42140 to 42740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,453 DEBUG Processing 343/664 atomic regions from SNP 102827 to 103427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,528 DEBUG Processing 86/562 atomic regions from SNP 25511 to 26111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,538 DEBUG Processing 526/677 atomic regions from SNP 157678 to 158278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,555 DEBUG Processing 629/708 atomic regions from SNP 188457 to 189057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,598 DEBUG Processing 142/599 atomic regions from SNP 42440 to 43040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,651 DEBUG Processing 344/664 atomic regions from SNP 103127 to 103727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,743 DEBUG Processing 87/562 atomic regions from SNP 25811 to 26411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,747 DEBUG Processing 527/677 atomic regions from SNP 157978 to 158578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,773 DEBUG Processing 630/708 atomic regions from SNP 188757 to 189357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,813 DEBUG Processing 143/599 atomic regions from SNP 42740 to 43340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,848 DEBUG Processing 345/664 atomic regions from SNP 103427 to 104027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,959 DEBUG Processing 528/677 atomic regions from SNP 158278 to 158878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,968 DEBUG Processing 88/562 atomic regions from SNP 26111 to 26711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,994 DEBUG Processing 631/708 atomic regions from SNP 189057 to 189657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,014 DEBUG Processing 144/599 atomic regions from SNP 43040 to 43640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,045 DEBUG Processing 346/664 atomic regions from SNP 103727 to 104327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,167 DEBUG Processing 529/677 atomic regions from SNP 158578 to 159178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,195 DEBUG Processing 89/562 atomic regions from SNP 26411 to 27011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:49,209 DEBUG Processing 632/708 atomic regions from SNP 189357 to 189957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,212 DEBUG Processing 145/599 atomic regions from SNP 43340 to 43940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,244 DEBUG Processing 347/664 atomic regions from SNP 104027 to 104627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,373 DEBUG Processing 530/677 atomic regions from SNP 158878 to 159478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,415 DEBUG Processing 146/599 atomic regions from SNP 43640 to 44240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,423 DEBUG Processing 90/562 atomic regions from SNP 26711 to 27311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:49,444 DEBUG Processing 348/664 atomic regions from SNP 104327 to 104927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,447 DEBUG Processing 633/708 atomic regions from SNP 189657 to 190257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,576 DEBUG Processing 531/677 atomic regions from SNP 159178 to 159778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,617 DEBUG Processing 147/599 atomic regions from SNP 43940 to 44540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,648 DEBUG Processing 349/664 atomic regions from SNP 104627 to 105227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,655 DEBUG Processing 91/562 atomic regions from SNP 27011 to 27611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:49,673 DEBUG Processing 634/708 atomic regions from SNP 189957 to 190557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,795 DEBUG Processing 532/677 atomic regions from SNP 159478 to 160078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,821 DEBUG Processing 148/599 atomic regions from SNP 44240 to 44840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,857 DEBUG Processing 350/664 atomic regions from SNP 104927 to 105527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,886 DEBUG Processing 92/562 atomic regions from SNP 27311 to 27911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:49,887 DEBUG Processing 635/708 atomic regions from SNP 190257 to 190857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,015 DEBUG Processing 149/599 atomic regions from SNP 44540 to 45140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,016 DEBUG Processing 533/677 atomic regions from SNP 159778 to 160378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,063 DEBUG Processing 351/664 atomic regions from SNP 105227 to 105827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,099 DEBUG Processing 636/708 atomic regions from SNP 190557 to 191157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,103 DEBUG Processing 93/562 atomic regions from SNP 27611 to 28211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,208 DEBUG Processing 150/599 atomic regions from SNP 44840 to 45440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,216 DEBUG Processing 534/677 atomic regions from SNP 160078 to 160678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,271 DEBUG Processing 352/664 atomic regions from SNP 105527 to 106127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,309 DEBUG Processing 637/708 atomic regions from SNP 190857 to 191457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,311 DEBUG Processing 94/562 atomic regions from SNP 27911 to 28511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,407 DEBUG Processing 151/599 atomic regions from SNP 45140 to 45740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,425 DEBUG Processing 535/677 atomic regions from SNP 160378 to 160978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,478 DEBUG Processing 353/664 atomic regions from SNP 105827 to 106427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,519 DEBUG Processing 95/562 atomic regions from SNP 28211 to 28811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,526 DEBUG Processing 638/708 atomic regions from SNP 191157 to 191757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,606 DEBUG Processing 152/599 atomic regions from SNP 45440 to 46040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,632 DEBUG Processing 536/677 atomic regions from SNP 160678 to 161278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,684 DEBUG Processing 354/664 atomic regions from SNP 106127 to 106727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,712 DEBUG Processing 96/562 atomic regions from SNP 28511 to 29111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,748 DEBUG Processing 639/708 atomic regions from SNP 191457 to 192057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,807 DEBUG Processing 153/599 atomic regions from SNP 45740 to 46340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,839 DEBUG Processing 537/677 atomic regions from SNP 160978 to 161578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,886 DEBUG Processing 355/664 atomic regions from SNP 106427 to 107027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,903 DEBUG Processing 97/562 atomic regions from SNP 28811 to 29411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,960 DEBUG Processing 640/708 atomic regions from SNP 191757 to 192357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,001 DEBUG Processing 154/599 atomic regions from SNP 46040 to 46640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,043 DEBUG Processing 538/677 atomic regions from SNP 161278 to 161878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,083 DEBUG Processing 356/664 atomic regions from SNP 106727 to 107327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,086 DEBUG Processing 98/562 atomic regions from SNP 29111 to 29711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,163 DEBUG Processing 641/708 atomic regions from SNP 192057 to 192657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,191 DEBUG Processing 155/599 atomic regions from SNP 46340 to 46940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,246 DEBUG Processing 539/677 atomic regions from SNP 161578 to 162178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,274 DEBUG Processing 99/562 atomic regions from SNP 29411 to 30011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,283 DEBUG Processing 357/664 atomic regions from SNP 107027 to 107627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,369 DEBUG Processing 642/708 atomic regions from SNP 192357 to 192957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,384 DEBUG Processing 156/599 atomic regions from SNP 46640 to 47240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,451 DEBUG Processing 540/677 atomic regions from SNP 161878 to 162478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,461 DEBUG Processing 100/562 atomic regions from SNP 29711 to 30311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,482 DEBUG Processing 358/664 atomic regions from SNP 107327 to 107927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,569 DEBUG Processing 643/708 atomic regions from SNP 192657 to 193257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,573 DEBUG Processing 157/599 atomic regions from SNP 46940 to 47540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,646 DEBUG Processing 101/562 atomic regions from SNP 30011 to 30611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,682 DEBUG Processing 541/677 atomic regions from SNP 162178 to 162778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,683 DEBUG Processing 359/664 atomic regions from SNP 107627 to 108227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,775 DEBUG Processing 158/599 atomic regions from SNP 47240 to 47840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,775 DEBUG Processing 644/708 atomic regions from SNP 192957 to 193557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,839 DEBUG Processing 102/562 atomic regions from SNP 30311 to 30911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,894 DEBUG Processing 360/664 atomic regions from SNP 107927 to 108527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,928 DEBUG Processing 542/677 atomic regions from SNP 162478 to 163078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,966 DEBUG Processing 159/599 atomic regions from SNP 47540 to 48140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,980 DEBUG Processing 645/708 atomic regions from SNP 193257 to 193857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,037 DEBUG Processing 103/562 atomic regions from SNP 30611 to 31211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,119 DEBUG Processing 361/664 atomic regions from SNP 108227 to 108827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,152 DEBUG Processing 543/677 atomic regions from SNP 162778 to 163378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,158 DEBUG Processing 160/599 atomic regions from SNP 47840 to 48440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,188 DEBUG Processing 646/708 atomic regions from SNP 193557 to 194157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,257 DEBUG Processing 104/562 atomic regions from SNP 30911 to 31511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,356 DEBUG Processing 362/664 atomic regions from SNP 108527 to 109127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,357 DEBUG Processing 161/599 atomic regions from SNP 48140 to 48740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,373 DEBUG Processing 544/677 atomic regions from SNP 163078 to 163678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,397 DEBUG Processing 647/708 atomic regions from SNP 193857 to 194457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,481 DEBUG Processing 105/562 atomic regions from SNP 31211 to 31811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,552 DEBUG Processing 162/599 atomic regions from SNP 48440 to 49040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,581 DEBUG Processing 545/677 atomic regions from SNP 163378 to 163978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,581 DEBUG Processing 363/664 atomic regions from SNP 108827 to 109427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,606 DEBUG Processing 648/708 atomic regions from SNP 194157 to 194757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,669 DEBUG Processing 106/562 atomic regions from SNP 31511 to 32111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,744 DEBUG Processing 163/599 atomic regions from SNP 48740 to 49340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,793 DEBUG Processing 364/664 atomic regions from SNP 109127 to 109727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,797 DEBUG Processing 546/677 atomic regions from SNP 163678 to 164278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,811 DEBUG Processing 649/708 atomic regions from SNP 194457 to 195057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,854 DEBUG Processing 107/562 atomic regions from SNP 31811 to 32411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,933 DEBUG Processing 164/599 atomic regions from SNP 49040 to 49640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,015 DEBUG Processing 650/708 atomic regions from SNP 194757 to 195357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,017 DEBUG Processing 547/677 atomic regions from SNP 163978 to 164578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,019 DEBUG Processing 365/664 atomic regions from SNP 109427 to 110027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,062 DEBUG Processing 108/562 atomic regions from SNP 32111 to 32711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,126 DEBUG Processing 165/599 atomic regions from SNP 49340 to 49940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,217 DEBUG Processing 651/708 atomic regions from SNP 195057 to 195657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,231 DEBUG Processing 366/664 atomic regions from SNP 109727 to 110327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,254 DEBUG Processing 548/677 atomic regions from SNP 164278 to 164878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,278 DEBUG Processing 109/562 atomic regions from SNP 32411 to 33011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,345 DEBUG Processing 166/599 atomic regions from SNP 49640 to 50240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,423 DEBUG Processing 652/708 atomic regions from SNP 195357 to 195957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,444 DEBUG Processing 367/664 atomic regions from SNP 110027 to 110627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,473 DEBUG Processing 110/562 atomic regions from SNP 32711 to 33311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,489 DEBUG Processing 549/677 atomic regions from SNP 164578 to 165178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,548 DEBUG Processing 167/599 atomic regions from SNP 49940 to 50540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,626 DEBUG Processing 653/708 atomic regions from SNP 195657 to 196257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,647 DEBUG Processing 368/664 atomic regions from SNP 110327 to 110927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,665 DEBUG Processing 111/562 atomic regions from SNP 33011 to 33611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,701 DEBUG Processing 550/677 atomic regions from SNP 164878 to 165478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,739 DEBUG Processing 168/599 atomic regions from SNP 50240 to 50840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,830 DEBUG Processing 654/708 atomic regions from SNP 195957 to 196557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,852 DEBUG Processing 369/664 atomic regions from SNP 110627 to 111227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,869 DEBUG Processing 112/562 atomic regions from SNP 33311 to 33911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,908 DEBUG Processing 551/677 atomic regions from SNP 165178 to 165778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,930 DEBUG Processing 169/599 atomic regions from SNP 50540 to 51140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,037 DEBUG Processing 655/708 atomic regions from SNP 196257 to 196857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,055 DEBUG Processing 370/664 atomic regions from SNP 110927 to 111527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,081 DEBUG Processing 113/562 atomic regions from SNP 33611 to 34211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,132 DEBUG Processing 170/599 atomic regions from SNP 50840 to 51440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,144 DEBUG Processing 552/677 atomic regions from SNP 165478 to 166078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,251 DEBUG Processing 656/708 atomic regions from SNP 196557 to 197157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,265 DEBUG Processing 371/664 atomic regions from SNP 111227 to 111827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,278 DEBUG Processing 114/562 atomic regions from SNP 33911 to 34511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,351 DEBUG Processing 171/599 atomic regions from SNP 51140 to 51740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,396 DEBUG Processing 553/677 atomic regions from SNP 165778 to 166378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,516 DEBUG Processing 657/708 atomic regions from SNP 196857 to 197457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,553 DEBUG Processing 372/664 atomic regions from SNP 111527 to 112127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,566 DEBUG Processing 115/562 atomic regions from SNP 34211 to 34811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,653 DEBUG Processing 172/599 atomic regions from SNP 51440 to 52040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,700 DEBUG Processing 554/677 atomic regions from SNP 166078 to 166678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,735 DEBUG Processing 658/708 atomic regions from SNP 197157 to 197757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,774 DEBUG Processing 116/562 atomic regions from SNP 34511 to 35111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,788 DEBUG Processing 373/664 atomic regions from SNP 111827 to 112427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,860 DEBUG Processing 173/599 atomic regions from SNP 51740 to 52340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,943 DEBUG Processing 555/677 atomic regions from SNP 166378 to 166978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,981 DEBUG Processing 659/708 atomic regions from SNP 197457 to 198057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,997 DEBUG Processing 117/562 atomic regions from SNP 34811 to 35411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,026 DEBUG Processing 374/664 atomic regions from SNP 112127 to 112727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,078 DEBUG Processing 174/599 atomic regions from SNP 52040 to 52640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,206 DEBUG Processing 660/708 atomic regions from SNP 197757 to 198357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,212 DEBUG Processing 118/562 atomic regions from SNP 35111 to 35711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,212 DEBUG Processing 556/677 atomic regions from SNP 166678 to 167278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,229 DEBUG Processing 375/664 atomic regions from SNP 112427 to 113027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,270 DEBUG Processing 175/599 atomic regions from SNP 52340 to 52940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,487 DEBUG Processing 661/708 atomic regions from SNP 198057 to 198657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,502 DEBUG Processing 557/677 atomic regions from SNP 166978 to 167578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,510 DEBUG Processing 119/562 atomic regions from SNP 35411 to 36011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,514 DEBUG Processing 376/664 atomic regions from SNP 112727 to 113327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,525 DEBUG Processing 176/599 atomic regions from SNP 52640 to 53240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,707 DEBUG Processing 662/708 atomic regions from SNP 198357 to 198957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,740 DEBUG Processing 558/677 atomic regions from SNP 167278 to 167878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,771 DEBUG Processing 377/664 atomic regions from SNP 113027 to 113627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,776 DEBUG Processing 120/562 atomic regions from SNP 35711 to 36311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,797 DEBUG Processing 177/599 atomic regions from SNP 52940 to 53540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,928 DEBUG Processing 663/708 atomic regions from SNP 198657 to 199257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,955 DEBUG Processing 559/677 atomic regions from SNP 167578 to 168178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,985 DEBUG Processing 121/562 atomic regions from SNP 36011 to 36611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,003 DEBUG Processing 378/664 atomic regions from SNP 113327 to 113927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,017 DEBUG Processing 178/599 atomic regions from SNP 53240 to 53840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,179 DEBUG Processing 664/708 atomic regions from SNP 198957 to 199557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,211 DEBUG Processing 122/562 atomic regions from SNP 36311 to 36911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,220 DEBUG Processing 560/677 atomic regions from SNP 167878 to 168478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,243 DEBUG Processing 179/599 atomic regions from SNP 53540 to 54140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,260 DEBUG Processing 379/664 atomic regions from SNP 113627 to 114227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,383 DEBUG Processing 665/708 atomic regions from SNP 199257 to 199857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,410 DEBUG Processing 123/562 atomic regions from SNP 36611 to 37211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,439 DEBUG Processing 561/677 atomic regions from SNP 168178 to 168778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,449 DEBUG Processing 180/599 atomic regions from SNP 53840 to 54440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,492 DEBUG Processing 380/664 atomic regions from SNP 113927 to 114527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,587 DEBUG Processing 666/708 atomic regions from SNP 199557 to 200157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,600 DEBUG Processing 124/562 atomic regions from SNP 36911 to 37511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,648 DEBUG Processing 562/677 atomic regions from SNP 168478 to 169078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,649 DEBUG Processing 181/599 atomic regions from SNP 54140 to 54740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,694 DEBUG Processing 381/664 atomic regions from SNP 114227 to 114827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,792 DEBUG Processing 125/562 atomic regions from SNP 37211 to 37811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,792 DEBUG Processing 667/708 atomic regions from SNP 199857 to 200457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,847 DEBUG Processing 182/599 atomic regions from SNP 54440 to 55040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,870 DEBUG Processing 563/677 atomic regions from SNP 168778 to 169378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,900 DEBUG Processing 382/664 atomic regions from SNP 114527 to 115127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,979 DEBUG Processing 126/562 atomic regions from SNP 37511 to 38111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,019 DEBUG Processing 668/708 atomic regions from SNP 200157 to 200757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,063 DEBUG Processing 183/599 atomic regions from SNP 54740 to 55340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,106 DEBUG Processing 564/677 atomic regions from SNP 169078 to 169678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,123 DEBUG Processing 383/664 atomic regions from SNP 114827 to 115427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,168 DEBUG Processing 127/562 atomic regions from SNP 37811 to 38411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,262 DEBUG Processing 184/599 atomic regions from SNP 55040 to 55640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,264 DEBUG Processing 669/708 atomic regions from SNP 200457 to 201057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,341 DEBUG Processing 565/677 atomic regions from SNP 169378 to 169978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,367 DEBUG Processing 128/562 atomic regions from SNP 38111 to 38711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,367 DEBUG Processing 384/664 atomic regions from SNP 115127 to 115727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,455 DEBUG Processing 185/599 atomic regions from SNP 55340 to 55940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,506 DEBUG Processing 670/708 atomic regions from SNP 200757 to 201357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,542 DEBUG Processing 566/677 atomic regions from SNP 169678 to 170278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,551 DEBUG Processing 129/562 atomic regions from SNP 38411 to 39011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,576 DEBUG Processing 385/664 atomic regions from SNP 115427 to 116027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,639 DEBUG Processing 186/599 atomic regions from SNP 55640 to 56240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,737 DEBUG Processing 130/562 atomic regions from SNP 38711 to 39311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,739 DEBUG Processing 671/708 atomic regions from SNP 201057 to 201657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,741 DEBUG Processing 567/677 atomic regions from SNP 169978 to 170578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,780 DEBUG Processing 386/664 atomic regions from SNP 115727 to 116327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,835 DEBUG Processing 187/599 atomic regions from SNP 55940 to 56540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,926 DEBUG Processing 131/562 atomic regions from SNP 39011 to 39611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,942 DEBUG Processing 568/677 atomic regions from SNP 170278 to 170878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,978 DEBUG Processing 672/708 atomic regions from SNP 201357 to 201957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,981 DEBUG Processing 387/664 atomic regions from SNP 116027 to 116627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,044 DEBUG Processing 188/599 atomic regions from SNP 56240 to 56840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,112 DEBUG Processing 132/562 atomic regions from SNP 39311 to 39911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,146 DEBUG Processing 569/677 atomic regions from SNP 170578 to 171178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,183 DEBUG Processing 388/664 atomic regions from SNP 116327 to 116927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,217 DEBUG Processing 673/708 atomic regions from SNP 201657 to 202257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,232 DEBUG Processing 189/599 atomic regions from SNP 56540 to 57140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,296 DEBUG Processing 133/562 atomic regions from SNP 39611 to 40211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,370 DEBUG Processing 570/677 atomic regions from SNP 170878 to 171478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,386 DEBUG Processing 389/664 atomic regions from SNP 116627 to 117227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,422 DEBUG Processing 190/599 atomic regions from SNP 56840 to 57440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,451 DEBUG Processing 674/708 atomic regions from SNP 201957 to 202557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,481 DEBUG Processing 134/562 atomic regions from SNP 39911 to 40511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,584 DEBUG Processing 571/677 atomic regions from SNP 171178 to 171778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,586 DEBUG Processing 390/664 atomic regions from SNP 116927 to 117527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,617 DEBUG Processing 191/599 atomic regions from SNP 57140 to 57740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,665 DEBUG Processing 135/562 atomic regions from SNP 40211 to 40811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,682 DEBUG Processing 675/708 atomic regions from SNP 202257 to 202857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,777 DEBUG Processing 572/677 atomic regions from SNP 171478 to 172078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,800 DEBUG Processing 391/664 atomic regions from SNP 117227 to 117827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,812 DEBUG Processing 192/599 atomic regions from SNP 57440 to 58040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,851 DEBUG Processing 136/562 atomic regions from SNP 40511 to 41111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,916 DEBUG Processing 676/708 atomic regions from SNP 202557 to 203157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,980 DEBUG Processing 573/677 atomic regions from SNP 171778 to 172378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,000 DEBUG Processing 392/664 atomic regions from SNP 117527 to 118127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,033 DEBUG Processing 193/599 atomic regions from SNP 57740 to 58340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,044 DEBUG Processing 137/562 atomic regions from SNP 40811 to 41411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,160 DEBUG Processing 677/708 atomic regions from SNP 202857 to 203457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,175 DEBUG Processing 574/677 atomic regions from SNP 172078 to 172678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,203 DEBUG Processing 393/664 atomic regions from SNP 117827 to 118427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,230 DEBUG Processing 138/562 atomic regions from SNP 41111 to 41711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,259 DEBUG Processing 194/599 atomic regions from SNP 58040 to 58640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,380 DEBUG Processing 575/677 atomic regions from SNP 172378 to 172978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,391 DEBUG Processing 678/708 atomic regions from SNP 203157 to 203757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,402 DEBUG Processing 394/664 atomic regions from SNP 118127 to 118727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,416 DEBUG Processing 139/562 atomic regions from SNP 41411 to 42011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,486 DEBUG Processing 195/599 atomic regions from SNP 58340 to 58940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,592 DEBUG Processing 576/677 atomic regions from SNP 172678 to 173278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,602 DEBUG Processing 140/562 atomic regions from SNP 41711 to 42311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,602 DEBUG Processing 395/664 atomic regions from SNP 118427 to 119027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,621 DEBUG Processing 679/708 atomic regions from SNP 203457 to 204057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,719 DEBUG Processing 196/599 atomic regions from SNP 58640 to 59240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,793 DEBUG Processing 141/562 atomic regions from SNP 42011 to 42611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,794 DEBUG Processing 577/677 atomic regions from SNP 172978 to 173578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,806 DEBUG Processing 396/664 atomic regions from SNP 118727 to 119327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,851 DEBUG Processing 680/708 atomic regions from SNP 203757 to 204357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,936 DEBUG Processing 197/599 atomic regions from SNP 58940 to 59540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,982 DEBUG Processing 142/562 atomic regions from SNP 42311 to 42911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,995 DEBUG Processing 578/677 atomic regions from SNP 173278 to 173878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,006 DEBUG Processing 397/664 atomic regions from SNP 119027 to 119627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,074 DEBUG Processing 681/708 atomic regions from SNP 204057 to 204657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,142 DEBUG Processing 198/599 atomic regions from SNP 59240 to 59840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,173 DEBUG Processing 143/562 atomic regions from SNP 42611 to 43211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,201 DEBUG Processing 579/677 atomic regions from SNP 173578 to 174178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,213 DEBUG Processing 398/664 atomic regions from SNP 119327 to 119927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,305 DEBUG Processing 682/708 atomic regions from SNP 204357 to 204957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,328 DEBUG Processing 199/599 atomic regions from SNP 59540 to 60140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,358 DEBUG Processing 144/562 atomic regions from SNP 42911 to 43511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,399 DEBUG Processing 580/677 atomic regions from SNP 173878 to 174478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,415 DEBUG Processing 399/664 atomic regions from SNP 119627 to 120227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,509 DEBUG Processing 683/708 atomic regions from SNP 204657 to 205257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,521 DEBUG Processing 200/599 atomic regions from SNP 59840 to 60440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,545 DEBUG Processing 145/562 atomic regions from SNP 43211 to 43811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,597 DEBUG Processing 581/677 atomic regions from SNP 174178 to 174778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,620 DEBUG Processing 400/664 atomic regions from SNP 119927 to 120527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,714 DEBUG Processing 201/599 atomic regions from SNP 60140 to 60740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,731 DEBUG Processing 146/562 atomic regions from SNP 43511 to 44111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,745 DEBUG Processing 684/708 atomic regions from SNP 204957 to 205557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,797 DEBUG Processing 582/677 atomic regions from SNP 174478 to 175078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,838 DEBUG Processing 401/664 atomic regions from SNP 120227 to 120827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,909 DEBUG Processing 202/599 atomic regions from SNP 60440 to 61040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,922 DEBUG Processing 147/562 atomic regions from SNP 43811 to 44411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,978 DEBUG Processing 685/708 atomic regions from SNP 205257 to 205857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,025 DEBUG Processing 583/677 atomic regions from SNP 174778 to 175378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,041 DEBUG Processing 402/664 atomic regions from SNP 120527 to 121127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,106 DEBUG Processing 203/599 atomic regions from SNP 60740 to 61340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,116 DEBUG Processing 148/562 atomic regions from SNP 44111 to 44711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,199 DEBUG Processing 686/708 atomic regions from SNP 205557 to 206157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,240 DEBUG Processing 403/664 atomic regions from SNP 120827 to 121427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,253 DEBUG Processing 584/677 atomic regions from SNP 175078 to 175678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,304 DEBUG Processing 149/562 atomic regions from SNP 44411 to 45011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,308 DEBUG Processing 204/599 atomic regions from SNP 61040 to 61640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,414 DEBUG Processing 687/708 atomic regions from SNP 205857 to 206457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,441 DEBUG Processing 404/664 atomic regions from SNP 121127 to 121727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,457 DEBUG Processing 585/677 atomic regions from SNP 175378 to 175978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,492 DEBUG Processing 150/562 atomic regions from SNP 44711 to 45311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,507 DEBUG Processing 205/599 atomic regions from SNP 61340 to 61940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,645 DEBUG Processing 688/708 atomic regions from SNP 206157 to 206757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,661 DEBUG Processing 586/677 atomic regions from SNP 175678 to 176278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,674 DEBUG Processing 405/664 atomic regions from SNP 121427 to 122027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,684 DEBUG Processing 151/562 atomic regions from SNP 45011 to 45611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,732 DEBUG Processing 206/599 atomic regions from SNP 61640 to 62240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,869 DEBUG Processing 587/677 atomic regions from SNP 175978 to 176578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,875 DEBUG Processing 689/708 atomic regions from SNP 206457 to 207057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,885 DEBUG Processing 152/562 atomic regions from SNP 45311 to 45911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,910 DEBUG Processing 406/664 atomic regions from SNP 121727 to 122327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,964 DEBUG Processing 207/599 atomic regions from SNP 61940 to 62540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,075 DEBUG Processing 588/677 atomic regions from SNP 176278 to 176878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,080 DEBUG Processing 153/562 atomic regions from SNP 45611 to 46211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,082 DEBUG Processing 690/708 atomic regions from SNP 206757 to 207357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,147 DEBUG Processing 407/664 atomic regions from SNP 122027 to 122627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,184 DEBUG Processing 208/599 atomic regions from SNP 62240 to 62840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,278 DEBUG Processing 154/562 atomic regions from SNP 45911 to 46511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,289 DEBUG Processing 589/677 atomic regions from SNP 176578 to 177178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,299 DEBUG Processing 691/708 atomic regions from SNP 207057 to 207657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,376 DEBUG Processing 209/599 atomic regions from SNP 62540 to 63140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,389 DEBUG Processing 408/664 atomic regions from SNP 122327 to 122927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,464 DEBUG Processing 155/562 atomic regions from SNP 46211 to 46811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,490 DEBUG Processing 590/677 atomic regions from SNP 176878 to 177478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,505 DEBUG Processing 692/708 atomic regions from SNP 207357 to 207957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,560 DEBUG Processing 210/599 atomic regions from SNP 62840 to 63440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,620 DEBUG Processing 409/664 atomic regions from SNP 122627 to 123227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,650 DEBUG Processing 156/562 atomic regions from SNP 46511 to 47111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,691 DEBUG Processing 591/677 atomic regions from SNP 177178 to 177778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,717 DEBUG Processing 693/708 atomic regions from SNP 207657 to 208257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,748 DEBUG Processing 211/599 atomic regions from SNP 63140 to 63740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,836 DEBUG Processing 410/664 atomic regions from SNP 122927 to 123527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,843 DEBUG Processing 157/562 atomic regions from SNP 46811 to 47411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,889 DEBUG Processing 592/677 atomic regions from SNP 177478 to 178078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,932 DEBUG Processing 694/708 atomic regions from SNP 207957 to 208557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,934 DEBUG Processing 212/599 atomic regions from SNP 63440 to 64040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,020 DEBUG Processing 158/562 atomic regions from SNP 47111 to 47711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,039 DEBUG Processing 411/664 atomic regions from SNP 123227 to 123827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,088 DEBUG Processing 593/677 atomic regions from SNP 177778 to 178378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,126 DEBUG Processing 213/599 atomic regions from SNP 63740 to 64340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,143 DEBUG Processing 695/708 atomic regions from SNP 208257 to 208857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,205 DEBUG Processing 159/562 atomic regions from SNP 47411 to 48011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,244 DEBUG Processing 412/664 atomic regions from SNP 123527 to 124127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,292 DEBUG Processing 594/677 atomic regions from SNP 178078 to 178678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,324 DEBUG Processing 214/599 atomic regions from SNP 64040 to 64640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,348 DEBUG Processing 696/708 atomic regions from SNP 208557 to 209157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,385 DEBUG Processing 160/562 atomic regions from SNP 47711 to 48311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,443 DEBUG Processing 413/664 atomic regions from SNP 123827 to 124427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,495 DEBUG Processing 595/677 atomic regions from SNP 178378 to 178978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,525 DEBUG Processing 215/599 atomic regions from SNP 64340 to 64940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,567 DEBUG Processing 697/708 atomic regions from SNP 208857 to 209457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,576 DEBUG Processing 161/562 atomic regions from SNP 48011 to 48611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,653 DEBUG Processing 414/664 atomic regions from SNP 124127 to 124727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,708 DEBUG Processing 596/677 atomic regions from SNP 178678 to 179278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,724 DEBUG Processing 216/599 atomic regions from SNP 64640 to 65240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,767 DEBUG Processing 162/562 atomic regions from SNP 48311 to 48911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,797 DEBUG Processing 698/708 atomic regions from SNP 209157 to 209757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,854 DEBUG Processing 415/664 atomic regions from SNP 124427 to 125027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,903 DEBUG Processing 597/677 atomic regions from SNP 178978 to 179578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,911 DEBUG Processing 217/599 atomic regions from SNP 64940 to 65540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,948 DEBUG Processing 163/562 atomic regions from SNP 48611 to 49211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,019 DEBUG Processing 699/708 atomic regions from SNP 209457 to 210057 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,055 DEBUG Processing 416/664 atomic regions from SNP 124727 to 125327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,099 DEBUG Processing 218/599 atomic regions from SNP 65240 to 65840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,099 DEBUG Processing 598/677 atomic regions from SNP 179278 to 179878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,135 DEBUG Processing 164/562 atomic regions from SNP 48911 to 49511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,251 DEBUG Processing 700/708 atomic regions from SNP 209757 to 210357 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,261 DEBUG Processing 417/664 atomic regions from SNP 125027 to 125627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,287 DEBUG Processing 219/599 atomic regions from SNP 65540 to 66140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,297 DEBUG Processing 599/677 atomic regions from SNP 179578 to 180178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,332 DEBUG Processing 165/562 atomic regions from SNP 49211 to 49811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,483 DEBUG Processing 418/664 atomic regions from SNP 125327 to 125927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,493 DEBUG Processing 220/599 atomic regions from SNP 65840 to 66440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,499 DEBUG Processing 701/708 atomic regions from SNP 210057 to 210657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,515 DEBUG Processing 166/562 atomic regions from SNP 49511 to 50111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,517 DEBUG Processing 600/677 atomic regions from SNP 179878 to 180478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,685 DEBUG Processing 221/599 atomic regions from SNP 66140 to 66740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,688 DEBUG Processing 419/664 atomic regions from SNP 125627 to 126227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,707 DEBUG Processing 167/562 atomic regions from SNP 49811 to 50411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,738 DEBUG Processing 702/708 atomic regions from SNP 210357 to 210957 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,742 DEBUG Processing 601/677 atomic regions from SNP 180178 to 180778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,879 DEBUG Processing 222/599 atomic regions from SNP 66440 to 67040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,896 DEBUG Processing 420/664 atomic regions from SNP 125927 to 126527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,904 DEBUG Processing 168/562 atomic regions from SNP 50111 to 50711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,961 DEBUG Processing 602/677 atomic regions from SNP 180478 to 181078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,977 DEBUG Processing 703/708 atomic regions from SNP 210657 to 211257 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,095 DEBUG Processing 223/599 atomic regions from SNP 66740 to 67340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,118 DEBUG Processing 169/562 atomic regions from SNP 50411 to 51011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,144 DEBUG Processing 421/664 atomic regions from SNP 126227 to 126827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,165 DEBUG Processing 603/677 atomic regions from SNP 180778 to 181378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,215 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:56:05,223 DEBUG Processing 704/708 atomic regions from SNP 210957 to 211557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,281 DEBUG Processing 224/599 atomic regions from SNP 67040 to 67640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,310 DEBUG Processing 170/562 atomic regions from SNP 50711 to 51311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,349 DEBUG Processing 422/664 atomic regions from SNP 126527 to 127127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,368 DEBUG Processing 604/677 atomic regions from SNP 181078 to 181678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,447 DEBUG Processing 705/708 atomic regions from SNP 211257 to 211857 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,474 DEBUG Processing 225/599 atomic regions from SNP 67340 to 67940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,507 DEBUG Processing 171/562 atomic regions from SNP 51011 to 51611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,576 DEBUG Processing 423/664 atomic regions from SNP 126827 to 127427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,576 DEBUG Processing 605/677 atomic regions from SNP 181378 to 181978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,730 DEBUG Processing 226/599 atomic regions from SNP 67640 to 68240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,744 DEBUG Processing 172/562 atomic regions from SNP 51311 to 51911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,749 DEBUG Processing 706/708 atomic regions from SNP 211557 to 212157 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,798 DEBUG Processing 606/677 atomic regions from SNP 181678 to 182278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,803 DEBUG Processing 424/664 atomic regions from SNP 127127 to 127727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,923 DEBUG Processing 227/599 atomic regions from SNP 67940 to 68540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,956 DEBUG Processing 173/562 atomic regions from SNP 51611 to 52211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,979 DEBUG Processing 707/708 atomic regions from SNP 211857 to 212457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,022 DEBUG Processing 607/677 atomic regions from SNP 181978 to 182578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,029 DEBUG Processing 425/664 atomic regions from SNP 127427 to 128027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,109 DEBUG Processing 228/599 atomic regions from SNP 68240 to 68840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,158 DEBUG Processing 174/562 atomic regions from SNP 51911 to 52511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,186 DEBUG Processing 708/708 atomic regions from SNP 212157 to 212757 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,232 DEBUG Processing 608/677 atomic regions from SNP 182278 to 182878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,237 DEBUG Processing 426/664 atomic regions from SNP 127727 to 128327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,291 DEBUG Processing 229/599 atomic regions from SNP 68540 to 69140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,298 DEBUG Unique SNPs positions in subchromosome 1: 212758 2025-01-31 09:56:06,355 DEBUG Processing 175/562 atomic regions from SNP 52211 to 52811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,443 DEBUG Processing 427/664 atomic regions from SNP 128027 to 128627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,452 DEBUG Processing 609/677 atomic regions from SNP 182578 to 183178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,475 DEBUG Processing 230/599 atomic regions from SNP 68840 to 69440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,550 DEBUG Processing 176/562 atomic regions from SNP 52511 to 53111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,659 DEBUG Processing 610/677 atomic regions from SNP 182878 to 183478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,661 DEBUG Processing 231/599 atomic regions from SNP 69140 to 69740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,675 DEBUG Processing 428/664 atomic regions from SNP 128327 to 128927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,762 DEBUG Processing 177/562 atomic regions from SNP 52811 to 53411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,846 DEBUG Processing 232/599 atomic regions from SNP 69440 to 70040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,854 DEBUG Processing 611/677 atomic regions from SNP 183178 to 183778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,912 DEBUG Processing 429/664 atomic regions from SNP 128627 to 129227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,968 DEBUG Processing 178/562 atomic regions from SNP 53111 to 53711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,031 DEBUG Processing 233/599 atomic regions from SNP 69740 to 70340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,048 DEBUG Processing 612/677 atomic regions from SNP 183478 to 184078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,119 DEBUG Processing 430/664 atomic regions from SNP 128927 to 129527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,169 DEBUG Processing 179/562 atomic regions from SNP 53411 to 54011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,220 DEBUG Processing 234/599 atomic regions from SNP 70040 to 70640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,245 DEBUG Processing 613/677 atomic regions from SNP 183778 to 184378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,346 DEBUG Processing 431/664 atomic regions from SNP 129227 to 129827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,383 DEBUG Processing 180/562 atomic regions from SNP 53711 to 54311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,409 DEBUG Processing 235/599 atomic regions from SNP 70340 to 70940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,443 DEBUG Processing 614/677 atomic regions from SNP 184078 to 184678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,578 DEBUG Processing 432/664 atomic regions from SNP 129527 to 130127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,582 DEBUG Processing 181/562 atomic regions from SNP 54011 to 54611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,598 DEBUG Processing 236/599 atomic regions from SNP 70640 to 71240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,638 DEBUG Processing 615/677 atomic regions from SNP 184378 to 184978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,778 DEBUG Processing 182/562 atomic regions from SNP 54311 to 54911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,785 DEBUG Processing 237/599 atomic regions from SNP 70940 to 71540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,803 DEBUG Processing 433/664 atomic regions from SNP 129827 to 130427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,833 DEBUG Processing 616/677 atomic regions from SNP 184678 to 185278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,970 DEBUG Processing 183/562 atomic regions from SNP 54611 to 55211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,975 DEBUG Processing 238/599 atomic regions from SNP 71240 to 71840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,015 DEBUG Processing 434/664 atomic regions from SNP 130127 to 130727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,044 DEBUG Processing 617/677 atomic regions from SNP 184978 to 185578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,160 DEBUG Processing 184/562 atomic regions from SNP 54911 to 55511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,171 DEBUG Processing 239/599 atomic regions from SNP 71540 to 72140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,220 DEBUG Processing 435/664 atomic regions from SNP 130427 to 131027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,270 DEBUG Processing 618/677 atomic regions from SNP 185278 to 185878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,341 DEBUG Processing 185/562 atomic regions from SNP 55211 to 55811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,358 DEBUG Processing 240/599 atomic regions from SNP 71840 to 72440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,421 DEBUG Processing 436/664 atomic regions from SNP 130727 to 131327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,494 DEBUG Processing 619/677 atomic regions from SNP 185578 to 186178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,540 DEBUG Processing 186/562 atomic regions from SNP 55511 to 56111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,553 DEBUG Processing 241/599 atomic regions from SNP 72140 to 72740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,623 DEBUG Processing 437/664 atomic regions from SNP 131027 to 131627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,690 DEBUG Processing 620/677 atomic regions from SNP 185878 to 186478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,740 DEBUG Processing 187/562 atomic regions from SNP 55811 to 56411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,764 DEBUG Processing 242/599 atomic regions from SNP 72440 to 73040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,825 DEBUG Processing 438/664 atomic regions from SNP 131327 to 131927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,883 DEBUG Processing 621/677 atomic regions from SNP 186178 to 186778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,925 DEBUG Processing 188/562 atomic regions from SNP 56111 to 56711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,952 DEBUG Processing 243/599 atomic regions from SNP 72740 to 73340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,025 DEBUG Processing 439/664 atomic regions from SNP 131627 to 132227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,077 DEBUG Processing 622/677 atomic regions from SNP 186478 to 187078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,108 DEBUG Processing 189/562 atomic regions from SNP 56411 to 57011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,139 DEBUG Processing 244/599 atomic regions from SNP 73040 to 73640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,225 DEBUG Processing 440/664 atomic regions from SNP 131927 to 132527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,274 DEBUG Processing 623/677 atomic regions from SNP 186778 to 187378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,294 DEBUG Processing 190/562 atomic regions from SNP 56711 to 57311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,329 DEBUG Processing 245/599 atomic regions from SNP 73340 to 73940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,426 DEBUG Processing 441/664 atomic regions from SNP 132227 to 132827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,473 DEBUG Processing 624/677 atomic regions from SNP 187078 to 187678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,478 DEBUG Processing 191/562 atomic regions from SNP 57011 to 57611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,518 DEBUG Processing 246/599 atomic regions from SNP 73640 to 74240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,624 DEBUG Processing 442/664 atomic regions from SNP 132527 to 133127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,662 DEBUG Processing 192/562 atomic regions from SNP 57311 to 57911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,669 DEBUG Processing 625/677 atomic regions from SNP 187378 to 187978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,705 DEBUG Processing 247/599 atomic regions from SNP 73940 to 74540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,830 DEBUG Processing 443/664 atomic regions from SNP 132827 to 133427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,849 DEBUG Processing 193/562 atomic regions from SNP 57611 to 58211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,871 DEBUG Processing 626/677 atomic regions from SNP 187678 to 188278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,898 DEBUG Processing 248/599 atomic regions from SNP 74240 to 74840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,036 DEBUG Processing 194/562 atomic regions from SNP 57911 to 58511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,041 DEBUG Processing 444/664 atomic regions from SNP 133127 to 133727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,076 DEBUG Processing 627/677 atomic regions from SNP 187978 to 188578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,089 DEBUG Processing 249/599 atomic regions from SNP 74540 to 75140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,219 DEBUG Processing 195/562 atomic regions from SNP 58211 to 58811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,251 DEBUG Processing 445/664 atomic regions from SNP 133427 to 134027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,276 DEBUG Processing 628/677 atomic regions from SNP 188278 to 188878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,280 DEBUG Processing 250/599 atomic regions from SNP 74840 to 75440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,401 DEBUG Processing 196/562 atomic regions from SNP 58511 to 59111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,466 DEBUG Processing 446/664 atomic regions from SNP 133727 to 134327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,471 DEBUG Processing 251/599 atomic regions from SNP 75140 to 75740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,485 DEBUG Processing 629/677 atomic regions from SNP 188578 to 189178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,590 DEBUG Processing 197/562 atomic regions from SNP 58811 to 59411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,659 DEBUG Processing 252/599 atomic regions from SNP 75440 to 76040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,694 DEBUG Processing 447/664 atomic regions from SNP 134027 to 134627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,712 DEBUG Processing 630/677 atomic regions from SNP 188878 to 189478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,795 DEBUG Processing 198/562 atomic regions from SNP 59111 to 59711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,854 DEBUG Processing 253/599 atomic regions from SNP 75740 to 76340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,925 DEBUG Processing 448/664 atomic regions from SNP 134327 to 134927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,946 DEBUG Processing 631/677 atomic regions from SNP 189178 to 189778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,998 DEBUG Processing 199/562 atomic regions from SNP 59411 to 60011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,035 DEBUG Processing 254/599 atomic regions from SNP 76040 to 76640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,160 DEBUG Processing 632/677 atomic regions from SNP 189478 to 190078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,167 DEBUG Processing 449/664 atomic regions from SNP 134627 to 135227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,179 DEBUG Processing 200/562 atomic regions from SNP 59711 to 60311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,215 DEBUG Processing 255/599 atomic regions from SNP 76340 to 76940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,360 DEBUG Processing 633/677 atomic regions from SNP 189778 to 190378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,364 DEBUG Processing 201/562 atomic regions from SNP 60011 to 60611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,398 DEBUG Processing 256/599 atomic regions from SNP 76640 to 77240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,407 DEBUG Processing 450/664 atomic regions from SNP 134927 to 135527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,554 DEBUG Processing 202/562 atomic regions from SNP 60311 to 60911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,564 DEBUG Processing 634/677 atomic regions from SNP 190078 to 190678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,590 DEBUG Processing 257/599 atomic regions from SNP 76940 to 77540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,628 DEBUG Processing 451/664 atomic regions from SNP 135227 to 135827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,752 DEBUG Processing 203/562 atomic regions from SNP 60611 to 61211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,786 DEBUG Processing 258/599 atomic regions from SNP 77240 to 77840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,786 DEBUG Processing 635/677 atomic regions from SNP 190378 to 190978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,845 DEBUG Processing 452/664 atomic regions from SNP 135527 to 136127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,960 DEBUG Processing 204/562 atomic regions from SNP 60911 to 61511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,979 DEBUG Processing 259/599 atomic regions from SNP 77540 to 78140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,003 DEBUG Processing 636/677 atomic regions from SNP 190678 to 191278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,072 DEBUG Processing 453/664 atomic regions from SNP 135827 to 136427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,147 DEBUG Processing 205/562 atomic regions from SNP 61211 to 61811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,169 DEBUG Processing 260/599 atomic regions from SNP 77840 to 78440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,227 DEBUG Processing 637/677 atomic regions from SNP 190978 to 191578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,309 DEBUG Processing 454/664 atomic regions from SNP 136127 to 136727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,324 DEBUG Processing 206/562 atomic regions from SNP 61511 to 62111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,353 DEBUG Processing 261/599 atomic regions from SNP 78140 to 78740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,424 DEBUG Processing 638/677 atomic regions from SNP 191278 to 191878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,505 DEBUG Processing 207/562 atomic regions from SNP 61811 to 62411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,536 DEBUG Processing 262/599 atomic regions from SNP 78440 to 79040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,543 DEBUG Processing 455/664 atomic regions from SNP 136427 to 137027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,617 DEBUG Processing 639/677 atomic regions from SNP 191578 to 192178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,689 DEBUG Processing 208/562 atomic regions from SNP 62111 to 62711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,719 DEBUG Processing 263/599 atomic regions from SNP 78740 to 79340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,768 DEBUG Processing 456/664 atomic regions from SNP 136727 to 137327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,810 DEBUG Processing 640/677 atomic regions from SNP 191878 to 192478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,898 DEBUG Processing 209/562 atomic regions from SNP 62411 to 63011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,903 DEBUG Processing 264/599 atomic regions from SNP 79040 to 79640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,993 DEBUG Processing 457/664 atomic regions from SNP 137027 to 137627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,004 DEBUG Processing 641/677 atomic regions from SNP 192178 to 192778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,087 DEBUG Processing 265/599 atomic regions from SNP 79340 to 79940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,106 DEBUG Processing 210/562 atomic regions from SNP 62711 to 63311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,196 DEBUG Processing 642/677 atomic regions from SNP 192478 to 193078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,224 DEBUG Processing 458/664 atomic regions from SNP 137327 to 137927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,272 DEBUG Processing 266/599 atomic regions from SNP 79640 to 80240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,316 DEBUG Processing 211/562 atomic regions from SNP 63011 to 63611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,412 DEBUG Processing 643/677 atomic regions from SNP 192778 to 193378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,442 DEBUG Processing 459/664 atomic regions from SNP 137627 to 138227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,459 DEBUG Processing 267/599 atomic regions from SNP 79940 to 80540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,518 DEBUG Processing 212/562 atomic regions from SNP 63311 to 63911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,607 DEBUG Processing 644/677 atomic regions from SNP 193078 to 193678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,645 DEBUG Processing 268/599 atomic regions from SNP 80240 to 80840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,673 DEBUG Processing 460/664 atomic regions from SNP 137927 to 138527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,716 DEBUG Processing 213/562 atomic regions from SNP 63611 to 64211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,800 DEBUG Processing 645/677 atomic regions from SNP 193378 to 193978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,829 DEBUG Processing 269/599 atomic regions from SNP 80540 to 81140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,904 DEBUG Processing 461/664 atomic regions from SNP 138227 to 138827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,920 DEBUG Processing 214/562 atomic regions from SNP 63911 to 64511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,997 DEBUG Processing 646/677 atomic regions from SNP 193678 to 194278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,017 DEBUG Processing 270/599 atomic regions from SNP 80840 to 81440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,116 DEBUG Processing 462/664 atomic regions from SNP 138527 to 139127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,121 DEBUG Processing 215/562 atomic regions from SNP 64211 to 64811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,193 DEBUG Processing 647/677 atomic regions from SNP 193978 to 194578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,204 DEBUG Processing 271/599 atomic regions from SNP 81140 to 81740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,319 DEBUG Processing 463/664 atomic regions from SNP 138827 to 139427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,321 DEBUG Processing 216/562 atomic regions from SNP 64511 to 65111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,390 DEBUG Processing 648/677 atomic regions from SNP 194278 to 194878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,391 DEBUG Processing 272/599 atomic regions from SNP 81440 to 82040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,499 DEBUG Processing 217/562 atomic regions from SNP 64811 to 65411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,551 DEBUG Processing 464/664 atomic regions from SNP 139127 to 139727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,580 DEBUG Processing 273/599 atomic regions from SNP 81740 to 82340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,588 DEBUG Processing 649/677 atomic regions from SNP 194578 to 195178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,675 DEBUG Processing 218/562 atomic regions from SNP 65111 to 65711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,767 DEBUG Processing 274/599 atomic regions from SNP 82040 to 82640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,770 DEBUG Processing 465/664 atomic regions from SNP 139427 to 140027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,784 DEBUG Processing 650/677 atomic regions from SNP 194878 to 195478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,849 DEBUG Processing 219/562 atomic regions from SNP 65411 to 66011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,950 DEBUG Processing 275/599 atomic regions from SNP 82340 to 82940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,978 DEBUG Processing 466/664 atomic regions from SNP 139727 to 140327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,980 DEBUG Processing 651/677 atomic regions from SNP 195178 to 195778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,027 DEBUG Processing 220/562 atomic regions from SNP 65711 to 66311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,132 DEBUG Processing 276/599 atomic regions from SNP 82640 to 83240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,176 DEBUG Processing 652/677 atomic regions from SNP 195478 to 196078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,187 DEBUG Processing 467/664 atomic regions from SNP 140027 to 140627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,207 DEBUG Processing 221/562 atomic regions from SNP 66011 to 66611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,314 DEBUG Processing 277/599 atomic regions from SNP 82940 to 83540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,371 DEBUG Processing 653/677 atomic regions from SNP 195778 to 196378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,388 DEBUG Processing 222/562 atomic regions from SNP 66311 to 66911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,389 DEBUG Processing 468/664 atomic regions from SNP 140327 to 140927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,505 DEBUG Processing 278/599 atomic regions from SNP 83240 to 83840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,567 DEBUG Processing 654/677 atomic regions from SNP 196078 to 196678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,569 DEBUG Processing 223/562 atomic regions from SNP 66611 to 67211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,588 DEBUG Processing 469/664 atomic regions from SNP 140627 to 141227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,688 DEBUG Processing 279/599 atomic regions from SNP 83540 to 84140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,748 DEBUG Processing 224/562 atomic regions from SNP 66911 to 67511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,760 DEBUG Processing 655/677 atomic regions from SNP 196378 to 196978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,808 DEBUG Processing 470/664 atomic regions from SNP 140927 to 141527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,871 DEBUG Processing 280/599 atomic regions from SNP 83840 to 84440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,926 DEBUG Processing 225/562 atomic regions from SNP 67211 to 67811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,953 DEBUG Processing 656/677 atomic regions from SNP 196678 to 197278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,045 DEBUG Processing 471/664 atomic regions from SNP 141227 to 141827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,053 DEBUG Processing 281/599 atomic regions from SNP 84140 to 84740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,108 DEBUG Processing 226/562 atomic regions from SNP 67511 to 68111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,150 DEBUG Processing 657/677 atomic regions from SNP 196978 to 197578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,235 DEBUG Processing 282/599 atomic regions from SNP 84440 to 85040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,279 DEBUG Processing 472/664 atomic regions from SNP 141527 to 142127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,285 DEBUG Processing 227/562 atomic regions from SNP 67811 to 68411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,342 DEBUG Processing 658/677 atomic regions from SNP 197278 to 197878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,415 DEBUG Processing 283/599 atomic regions from SNP 84740 to 85340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,462 DEBUG Processing 228/562 atomic regions from SNP 68111 to 68711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,506 DEBUG Processing 473/664 atomic regions from SNP 141827 to 142427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,538 DEBUG Processing 659/677 atomic regions from SNP 197578 to 198178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,604 DEBUG Processing 284/599 atomic regions from SNP 85040 to 85640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,640 DEBUG Processing 229/562 atomic regions from SNP 68411 to 69011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,723 DEBUG Processing 474/664 atomic regions from SNP 142127 to 142727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,730 DEBUG Processing 660/677 atomic regions from SNP 197878 to 198478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,792 DEBUG Processing 285/599 atomic regions from SNP 85340 to 85940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,816 DEBUG Processing 230/562 atomic regions from SNP 68711 to 69311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,926 DEBUG Processing 661/677 atomic regions from SNP 198178 to 198778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,927 DEBUG Processing 475/664 atomic regions from SNP 142427 to 143027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,984 DEBUG Processing 286/599 atomic regions from SNP 85640 to 86240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,002 DEBUG Processing 231/562 atomic regions from SNP 69011 to 69611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,120 DEBUG Processing 476/664 atomic regions from SNP 142727 to 143327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,123 DEBUG Processing 662/677 atomic regions from SNP 198478 to 199078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,171 DEBUG Processing 287/599 atomic regions from SNP 85940 to 86540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,182 DEBUG Processing 232/562 atomic regions from SNP 69311 to 69911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,316 DEBUG Processing 477/664 atomic regions from SNP 143027 to 143627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,317 DEBUG Processing 663/677 atomic regions from SNP 198778 to 199378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,359 DEBUG Processing 288/599 atomic regions from SNP 86240 to 86840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,362 DEBUG Processing 233/562 atomic regions from SNP 69611 to 70211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,511 DEBUG Processing 478/664 atomic regions from SNP 143327 to 143927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,513 DEBUG Processing 664/677 atomic regions from SNP 199078 to 199678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,543 DEBUG Processing 234/562 atomic regions from SNP 69911 to 70511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,545 DEBUG Processing 289/599 atomic regions from SNP 86540 to 87140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,599 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:56:17,601 DEBUG chr17: Signal quantile: 0.988. signal threshold: 15. Best RMSEA: 0.014 2025-01-31 09:56:17,708 DEBUG Processing 665/677 atomic regions from SNP 199378 to 199978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,709 DEBUG Processing 479/664 atomic regions from SNP 143627 to 144227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,725 DEBUG Processing 235/562 atomic regions from SNP 70211 to 70811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,732 DEBUG Processing 290/599 atomic regions from SNP 86840 to 87440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,904 DEBUG Processing 666/677 atomic regions from SNP 199678 to 200278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,906 DEBUG Processing 480/664 atomic regions from SNP 143927 to 144527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,907 DEBUG Processing 236/562 atomic regions from SNP 70511 to 71111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,919 DEBUG Processing 291/599 atomic regions from SNP 87140 to 87740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,089 DEBUG Processing 237/562 atomic regions from SNP 70811 to 71411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,102 DEBUG Processing 667/677 atomic regions from SNP 199978 to 200578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,103 DEBUG Processing 481/664 atomic regions from SNP 144227 to 144827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,105 DEBUG Processing 292/599 atomic regions from SNP 87440 to 88040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,275 DEBUG Processing 238/562 atomic regions from SNP 71111 to 71711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,294 DEBUG Processing 293/599 atomic regions from SNP 87740 to 88340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,302 DEBUG Processing 482/664 atomic regions from SNP 144527 to 145127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,303 DEBUG Processing 668/677 atomic regions from SNP 200278 to 200878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,462 DEBUG Processing 239/562 atomic regions from SNP 71411 to 72011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,485 DEBUG Processing 294/599 atomic regions from SNP 88040 to 88640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,504 DEBUG Processing 669/677 atomic regions from SNP 200578 to 201178 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,504 DEBUG Processing 483/664 atomic regions from SNP 144827 to 145427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,646 DEBUG Processing 240/562 atomic regions from SNP 71711 to 72311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,674 DEBUG Processing 295/599 atomic regions from SNP 88340 to 88940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,701 DEBUG Processing 484/664 atomic regions from SNP 145127 to 145727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,703 DEBUG Processing 670/677 atomic regions from SNP 200878 to 201478 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,825 DEBUG Processing 241/562 atomic regions from SNP 72011 to 72611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,860 DEBUG Processing 296/599 atomic regions from SNP 88640 to 89240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,896 DEBUG Processing 671/677 atomic regions from SNP 201178 to 201778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,896 DEBUG Processing 485/664 atomic regions from SNP 145427 to 146027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,000 DEBUG Processing 242/562 atomic regions from SNP 72311 to 72911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,042 DEBUG Processing 297/599 atomic regions from SNP 88940 to 89540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,090 DEBUG Processing 672/677 atomic regions from SNP 201478 to 202078 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,091 DEBUG Processing 486/664 atomic regions from SNP 145727 to 146327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,170 DEBUG chr17 total SNP count: 160536 2025-01-31 09:56:19,171 DEBUG chr17 length: 94987271 2025-01-31 09:56:19,171 DEBUG ----------------------------------------- 2025-01-31 09:56:19,171 INFO Processing SNPs in chr17 2025-01-31 09:56:19,179 DEBUG Processing 243/562 atomic regions from SNP 72611 to 73211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,228 DEBUG Processing 298/599 atomic regions from SNP 89240 to 89840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,283 DEBUG Processing 673/677 atomic regions from SNP 201778 to 202378 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,287 DEBUG Processing 487/664 atomic regions from SNP 146027 to 146627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,326 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 160536)] 2025-01-31 09:56:19,353 DEBUG Processing 244/562 atomic regions from SNP 72911 to 73511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,410 DEBUG Processing 299/599 atomic regions from SNP 89540 to 90140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,432 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:19,475 DEBUG Processing 674/677 atomic regions from SNP 202078 to 202678 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,484 DEBUG Processing 488/664 atomic regions from SNP 146327 to 146927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,527 DEBUG Processing 245/562 atomic regions from SNP 73211 to 73811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,590 DEBUG Processing 300/599 atomic regions from SNP 89840 to 90440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,669 DEBUG Processing 675/677 atomic regions from SNP 202378 to 202978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,682 DEBUG Processing 489/664 atomic regions from SNP 146627 to 147227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,704 DEBUG Processing 246/562 atomic regions from SNP 73511 to 74111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,770 DEBUG Processing 301/599 atomic regions from SNP 90140 to 90740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,879 DEBUG Processing 490/664 atomic regions from SNP 146927 to 147527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,882 DEBUG Processing 676/677 atomic regions from SNP 202678 to 203278 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,882 DEBUG Processing 247/562 atomic regions from SNP 73811 to 74411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,955 DEBUG Processing 302/599 atomic regions from SNP 90440 to 91040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,077 DEBUG Processing 491/664 atomic regions from SNP 147227 to 147827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,079 DEBUG Processing 248/562 atomic regions from SNP 74111 to 74711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,103 DEBUG Processing 677/677 atomic regions from SNP 202978 to 203578 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,143 DEBUG Processing 303/599 atomic regions from SNP 90740 to 91340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,235 DEBUG Unique SNPs positions in subchromosome 1: 203579 2025-01-31 09:56:20,264 DEBUG Processing 249/562 atomic regions from SNP 74411 to 75011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,276 DEBUG Processing 492/664 atomic regions from SNP 147527 to 148127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,344 DEBUG Processing 304/599 atomic regions from SNP 91040 to 91640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,438 DEBUG Processing 250/562 atomic regions from SNP 74711 to 75311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,472 DEBUG Processing 493/664 atomic regions from SNP 147827 to 148427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,532 DEBUG Processing 305/599 atomic regions from SNP 91340 to 91940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,617 DEBUG Processing 251/562 atomic regions from SNP 75011 to 75611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,666 DEBUG Processing 494/664 atomic regions from SNP 148127 to 148727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,711 DEBUG Processing 306/599 atomic regions from SNP 91640 to 92240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,793 DEBUG Processing 252/562 atomic regions from SNP 75311 to 75911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,861 DEBUG Processing 495/664 atomic regions from SNP 148427 to 149027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,888 DEBUG Processing 307/599 atomic regions from SNP 91940 to 92540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,968 DEBUG Processing 253/562 atomic regions from SNP 75611 to 76211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,064 DEBUG Processing 496/664 atomic regions from SNP 148727 to 149327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,067 DEBUG Processing 308/599 atomic regions from SNP 92240 to 92840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,143 DEBUG Processing 254/562 atomic regions from SNP 75911 to 76511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,247 DEBUG Processing 309/599 atomic regions from SNP 92540 to 93140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,291 DEBUG Processing 497/664 atomic regions from SNP 149027 to 149627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,320 DEBUG Processing 255/562 atomic regions from SNP 76211 to 76811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,428 DEBUG Processing 310/599 atomic regions from SNP 92840 to 93440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,484 DEBUG Processing 498/664 atomic regions from SNP 149327 to 149927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,492 DEBUG Processing 256/562 atomic regions from SNP 76511 to 77111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,604 DEBUG Processing 311/599 atomic regions from SNP 93140 to 93740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,665 DEBUG Processing 257/562 atomic regions from SNP 76811 to 77411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,678 DEBUG Processing 499/664 atomic regions from SNP 149627 to 150227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,782 DEBUG Processing 312/599 atomic regions from SNP 93440 to 94040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,848 DEBUG Processing 258/562 atomic regions from SNP 77111 to 77711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,885 DEBUG Processing 500/664 atomic regions from SNP 149927 to 150527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,965 DEBUG Processing 313/599 atomic regions from SNP 93740 to 94340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,028 DEBUG Processing 259/562 atomic regions from SNP 77411 to 78011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,083 DEBUG Processing 501/664 atomic regions from SNP 150227 to 150827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,143 DEBUG Processing 314/599 atomic regions from SNP 94040 to 94640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,202 DEBUG Processing 260/562 atomic regions from SNP 77711 to 78311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,285 DEBUG Processing 502/664 atomic regions from SNP 150527 to 151127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,323 DEBUG Processing 315/599 atomic regions from SNP 94340 to 94940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,382 DEBUG Processing 261/562 atomic regions from SNP 78011 to 78611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,492 DEBUG Processing 503/664 atomic regions from SNP 150827 to 151427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,505 DEBUG Processing 316/599 atomic regions from SNP 94640 to 95240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,558 DEBUG Processing 262/562 atomic regions from SNP 78311 to 78911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,686 DEBUG Processing 317/599 atomic regions from SNP 94940 to 95540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,691 DEBUG Processing 504/664 atomic regions from SNP 151127 to 151727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,735 DEBUG Processing 263/562 atomic regions from SNP 78611 to 79211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,867 DEBUG Processing 318/599 atomic regions from SNP 95240 to 95840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,887 DEBUG Processing 505/664 atomic regions from SNP 151427 to 152027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,912 DEBUG Processing 264/562 atomic regions from SNP 78911 to 79511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,047 DEBUG Processing 319/599 atomic regions from SNP 95540 to 96140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,083 DEBUG Processing 506/664 atomic regions from SNP 151727 to 152327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,089 DEBUG Processing 265/562 atomic regions from SNP 79211 to 79811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,256 DEBUG Processing 320/599 atomic regions from SNP 95840 to 96440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,263 DEBUG Processing 266/562 atomic regions from SNP 79511 to 80111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,277 DEBUG Processing 507/664 atomic regions from SNP 152027 to 152627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,443 DEBUG Processing 267/562 atomic regions from SNP 79811 to 80411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,469 DEBUG Processing 321/599 atomic regions from SNP 96140 to 96740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,475 DEBUG Processing 508/664 atomic regions from SNP 152327 to 152927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,620 DEBUG Processing 268/562 atomic regions from SNP 80111 to 80711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,673 DEBUG Processing 322/599 atomic regions from SNP 96440 to 97040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,673 DEBUG Processing 509/664 atomic regions from SNP 152627 to 153227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,797 DEBUG Processing 269/562 atomic regions from SNP 80411 to 81011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,857 DEBUG Processing 323/599 atomic regions from SNP 96740 to 97340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,869 DEBUG Processing 510/664 atomic regions from SNP 152927 to 153527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,974 DEBUG Processing 270/562 atomic regions from SNP 80711 to 81311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,049 DEBUG Processing 324/599 atomic regions from SNP 97040 to 97640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,067 DEBUG Processing 511/664 atomic regions from SNP 153227 to 153827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,152 DEBUG Processing 271/562 atomic regions from SNP 81011 to 81611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,252 DEBUG Processing 325/599 atomic regions from SNP 97340 to 97940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,270 DEBUG Processing 512/664 atomic regions from SNP 153527 to 154127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,328 DEBUG Processing 272/562 atomic regions from SNP 81311 to 81911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,465 DEBUG Processing 326/599 atomic regions from SNP 97640 to 98240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,473 DEBUG Processing 513/664 atomic regions from SNP 153827 to 154427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,504 DEBUG Processing 273/562 atomic regions from SNP 81611 to 82211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,676 DEBUG Processing 514/664 atomic regions from SNP 154127 to 154727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,681 DEBUG Processing 274/562 atomic regions from SNP 81911 to 82511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,686 DEBUG Processing 327/599 atomic regions from SNP 97940 to 98540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,861 DEBUG Processing 275/562 atomic regions from SNP 82211 to 82811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,882 DEBUG Processing 515/664 atomic regions from SNP 154427 to 155027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,894 DEBUG Processing 328/599 atomic regions from SNP 98240 to 98840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,040 DEBUG Processing 276/562 atomic regions from SNP 82511 to 83111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,088 DEBUG Processing 516/664 atomic regions from SNP 154727 to 155327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,093 DEBUG Processing 329/599 atomic regions from SNP 98540 to 99140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,216 DEBUG Processing 277/562 atomic regions from SNP 82811 to 83411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,279 DEBUG Processing 330/599 atomic regions from SNP 98840 to 99440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,292 DEBUG Processing 517/664 atomic regions from SNP 155027 to 155627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,393 DEBUG Processing 278/562 atomic regions from SNP 83111 to 83711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,461 DEBUG Processing 331/599 atomic regions from SNP 99140 to 99740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,495 DEBUG Processing 518/664 atomic regions from SNP 155327 to 155927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,568 DEBUG Processing 279/562 atomic regions from SNP 83411 to 84011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,642 DEBUG Processing 332/599 atomic regions from SNP 99440 to 100040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,698 DEBUG Processing 519/664 atomic regions from SNP 155627 to 156227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,753 DEBUG Processing 280/562 atomic regions from SNP 83711 to 84311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,823 DEBUG Processing 333/599 atomic regions from SNP 99740 to 100340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,898 DEBUG Processing 520/664 atomic regions from SNP 155927 to 156527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,953 DEBUG Processing 281/562 atomic regions from SNP 84011 to 84611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,004 DEBUG Processing 334/599 atomic regions from SNP 100040 to 100640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,095 DEBUG Processing 521/664 atomic regions from SNP 156227 to 156827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,131 DEBUG Processing 282/562 atomic regions from SNP 84311 to 84911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,187 DEBUG Processing 335/599 atomic regions from SNP 100340 to 100940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,289 DEBUG Processing 522/664 atomic regions from SNP 156527 to 157127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,305 DEBUG Processing 283/562 atomic regions from SNP 84611 to 85211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,373 DEBUG Processing 336/599 atomic regions from SNP 100640 to 101240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,483 DEBUG Processing 523/664 atomic regions from SNP 156827 to 157427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,486 DEBUG Processing 284/562 atomic regions from SNP 84911 to 85511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,555 DEBUG Processing 337/599 atomic regions from SNP 100940 to 101540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,663 DEBUG Processing 285/562 atomic regions from SNP 85211 to 85811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,678 DEBUG Processing 524/664 atomic regions from SNP 157127 to 157727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,736 DEBUG Processing 338/599 atomic regions from SNP 101240 to 101840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,842 DEBUG Processing 286/562 atomic regions from SNP 85511 to 86111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,878 DEBUG Processing 525/664 atomic regions from SNP 157427 to 158027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,916 DEBUG Processing 339/599 atomic regions from SNP 101540 to 102140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,954 DEBUG Subchromosome time: 178.99406802200247, subchromosome SNPs: 203579 2025-01-31 09:56:26,955 DEBUG Estimated BADs: [1.82, 0.91, 1.82, 0.91, 18.17, 3.63, 18.17, 0.91, 18.17, 3.63, 1.82, 0.45, 1.82, 5.45, 1.82, 5.45, 1.82, 3.63, 0.91, 3.63, 1.82, 5.45, 1.82, 14.54, 0.61, 12.72, 1.82, 9.09, 0.91, 12.72, 0.61, 3.63, 1.82, 3.63, 1.82, 3.63, 1.82, 0.91, 3.63] SNP counts: [2494, 7241, 9904, 11156, 232, 757, 563, 1742, 920, 1810, 2105, 3296, 38193, 864, 8913, 2181, 4569, 5352, 2986, 2195, 12995, 1304, 7167, 97, 4583, 117, 1245, 290, 3380, 87, 12242, 4321, 6714, 6875, 19936, 1999, 4472, 7498, 784] SNP IDs counts: [2494, 7241, 9904, 11156, 232, 757, 563, 1742, 920, 1810, 2105, 3296, 38193, 864, 8913, 2181, 4569, 5352, 2986, 2195, 12995, 1304, 7167, 97, 4583, 117, 1245, 290, 3380, 87, 12242, 4321, 6714, 6875, 19936, 1999, 4472, 7498, 784] Critical gap: 597194bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.53Mbp, 8.75Mbp, 14.75Mbp, 21.16Mbp, 21.28Mbp, 21.71Mbp, 22.06Mbp, 23.26Mbp, 23.77Mbp, 24.74Mbp, 25.91Mbp, 27.84Mbp, 48.80Mbp, 49.24Mbp, 54.44Mbp, 55.60Mbp, 58.01Mbp, 60.85Mbp, 63.13Mbp, 64.30Mbp, 73.25Mbp, 73.94Mbp, 78.16Mbp, 78.21Mbp, 80.88Mbp, 80.94Mbp, 81.63Mbp, 81.78Mbp, 83.69Mbp, 83.74Mbp, 90.90Mbp, 93.30Mbp, 96.91Mbp, 100.65Mbp, 111.68Mbp, 112.74Mbp, 115.17Mbp, 119.43Mbp, 120.42Mbp] 2025-01-31 09:56:26,955 DEBUG chr13 time: 178.99460874404758 s 2025-01-31 09:56:27,019 DEBUG Processing 287/562 atomic regions from SNP 85811 to 86411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,067 DEBUG chr13: Fitting background model for 39 segments 2025-01-31 09:56:27,077 DEBUG Processing 526/664 atomic regions from SNP 157727 to 158327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,097 DEBUG Processing 340/599 atomic regions from SNP 101840 to 102440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,199 DEBUG Processing 288/562 atomic regions from SNP 86111 to 86711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,278 DEBUG Processing 527/664 atomic regions from SNP 158027 to 158627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,280 DEBUG Processing 341/599 atomic regions from SNP 102140 to 102740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,383 DEBUG Processing 289/562 atomic regions from SNP 86411 to 87011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,468 DEBUG Processing 342/599 atomic regions from SNP 102440 to 103040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,484 DEBUG Processing 528/664 atomic regions from SNP 158327 to 158927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,561 DEBUG Processing 290/562 atomic regions from SNP 86711 to 87311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,649 DEBUG Processing 343/599 atomic regions from SNP 102740 to 103340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,685 DEBUG Processing 529/664 atomic regions from SNP 158627 to 159227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,741 DEBUG Processing 291/562 atomic regions from SNP 87011 to 87611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,832 DEBUG Processing 344/599 atomic regions from SNP 103040 to 103640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,887 DEBUG Processing 530/664 atomic regions from SNP 158927 to 159527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,922 DEBUG Processing 292/562 atomic regions from SNP 87311 to 87911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,014 DEBUG Processing 345/599 atomic regions from SNP 103340 to 103940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,090 DEBUG Processing 531/664 atomic regions from SNP 159227 to 159827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,103 DEBUG Processing 293/562 atomic regions from SNP 87611 to 88211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,203 DEBUG Processing 346/599 atomic regions from SNP 103640 to 104240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,292 DEBUG Processing 532/664 atomic regions from SNP 159527 to 160127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,292 DEBUG Processing 294/562 atomic regions from SNP 87911 to 88511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,384 DEBUG Subchromosome time: 203.9998869500123, subchromosome SNPs: 212758 2025-01-31 09:56:28,385 DEBUG Estimated BADs: [20.52, 4.10, 1.03, 0.34, 2.05, 0.34, 1.03, 0.41, 2.05, 0.41, 2.05, 1.03, 0.41, 1.03, 16.42, 2.05, 4.10, 2.05, 10.26, 2.05, 0.41, 2.05, 20.52, 4.10, 2.05, 4.10, 0.68, 4.10, 6.16, 2.05, 4.10, 2.05, 0.51, 1.03, 6.16, 4.10] SNP counts: [148, 6551, 4233, 2986, 2435, 5991, 1898, 3219, 9003, 7483, 9974, 3525, 9603, 11967, 188, 17929, 6604, 11802, 3240, 4722, 1117, 1366, 118, 9416, 8420, 9216, 8103, 5215, 3778, 2444, 12400, 6840, 3205, 4928, 3505, 9186] SNP IDs counts: [148, 6551, 4233, 2986, 2435, 5991, 1898, 3219, 9003, 7483, 9974, 3525, 9603, 11967, 188, 17929, 6604, 11802, 3240, 4722, 1117, 1366, 118, 9416, 8420, 9216, 8103, 5215, 3778, 2444, 12400, 6840, 3205, 4928, 3505, 9186] Critical gap: 591975bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.77Mbp, 9.24Mbp, 11.08Mbp, 12.47Mbp, 16.17Mbp, 17.29Mbp, 19.20Mbp, 24.22Mbp, 28.71Mbp, 34.32Mbp, 36.37Mbp, 41.99Mbp, 48.77Mbp, 48.87Mbp, 58.90Mbp, 62.52Mbp, 68.97Mbp, 70.69Mbp, 73.30Mbp, 74.04Mbp, 74.83Mbp, 74.90Mbp, 79.96Mbp, 84.56Mbp, 89.52Mbp, 94.13Mbp, 96.90Mbp, 98.91Mbp, 100.28Mbp, 106.97Mbp, 110.68Mbp, 112.46Mbp, 115.14Mbp, 117.04Mbp, 122.08Mbp] 2025-01-31 09:56:28,385 DEBUG chr11 time: 204.0003921679454 s 2025-01-31 09:56:28,396 DEBUG Processing 347/599 atomic regions from SNP 103940 to 104540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,475 DEBUG Processing 295/562 atomic regions from SNP 88211 to 88811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,496 DEBUG Processing 533/664 atomic regions from SNP 159827 to 160427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,518 DEBUG chr11: Fitting background model for 36 segments 2025-01-31 09:56:28,591 DEBUG Processing 348/599 atomic regions from SNP 104240 to 104840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,655 DEBUG Processing 296/562 atomic regions from SNP 88511 to 89111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,695 DEBUG Processing 534/664 atomic regions from SNP 160127 to 160727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,780 DEBUG Processing 349/599 atomic regions from SNP 104540 to 105140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,836 DEBUG Processing 297/562 atomic regions from SNP 88811 to 89411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,894 DEBUG Processing 535/664 atomic regions from SNP 160427 to 161027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,968 DEBUG Processing 350/599 atomic regions from SNP 104840 to 105440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,020 DEBUG Processing 298/562 atomic regions from SNP 89111 to 89711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,090 DEBUG Processing 536/664 atomic regions from SNP 160727 to 161327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,161 DEBUG Processing 351/599 atomic regions from SNP 105140 to 105740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,207 DEBUG Processing 299/562 atomic regions from SNP 89411 to 90011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,294 DEBUG Processing 537/664 atomic regions from SNP 161027 to 161627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,351 DEBUG Processing 352/599 atomic regions from SNP 105440 to 106040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,393 DEBUG Processing 300/562 atomic regions from SNP 89711 to 90311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,530 DEBUG Processing 538/664 atomic regions from SNP 161327 to 161927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,550 DEBUG Processing 353/599 atomic regions from SNP 105740 to 106340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,580 DEBUG Processing 301/562 atomic regions from SNP 90011 to 90611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,731 DEBUG Processing 539/664 atomic regions from SNP 161627 to 162227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,742 DEBUG Processing 354/599 atomic regions from SNP 106040 to 106640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,767 DEBUG Processing 302/562 atomic regions from SNP 90311 to 90911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,929 DEBUG Processing 355/599 atomic regions from SNP 106340 to 106940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,935 DEBUG Processing 540/664 atomic regions from SNP 161927 to 162527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,950 DEBUG Processing 303/562 atomic regions from SNP 90611 to 91211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,118 DEBUG Processing 356/599 atomic regions from SNP 106640 to 107240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,137 DEBUG Processing 304/562 atomic regions from SNP 90911 to 91511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,154 DEBUG Processing 541/664 atomic regions from SNP 162227 to 162827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,318 DEBUG Processing 357/599 atomic regions from SNP 106940 to 107540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,321 DEBUG Processing 305/562 atomic regions from SNP 91211 to 91811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,384 DEBUG Processing 542/664 atomic regions from SNP 162527 to 163127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,506 DEBUG Processing 306/562 atomic regions from SNP 91511 to 92111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,531 DEBUG Processing 358/599 atomic regions from SNP 107240 to 107840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,591 DEBUG Processing 543/664 atomic regions from SNP 162827 to 163427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,685 DEBUG Processing 307/562 atomic regions from SNP 91811 to 92411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,735 DEBUG Processing 359/599 atomic regions from SNP 107540 to 108140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,791 DEBUG Processing 544/664 atomic regions from SNP 163127 to 163727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,866 DEBUG Processing 308/562 atomic regions from SNP 92111 to 92711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,929 DEBUG Processing 360/599 atomic regions from SNP 107840 to 108440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,015 DEBUG Processing 545/664 atomic regions from SNP 163427 to 164027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,047 DEBUG Processing 309/562 atomic regions from SNP 92411 to 93011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,111 DEBUG Processing 361/599 atomic regions from SNP 108140 to 108740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,222 DEBUG Processing 546/664 atomic regions from SNP 163727 to 164327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,226 DEBUG Processing 310/562 atomic regions from SNP 92711 to 93311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,293 DEBUG Processing 362/599 atomic regions from SNP 108440 to 109040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,404 DEBUG Processing 311/562 atomic regions from SNP 93011 to 93611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,454 DEBUG Processing 547/664 atomic regions from SNP 164027 to 164627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,479 DEBUG Processing 363/599 atomic regions from SNP 108740 to 109340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,589 DEBUG Processing 312/562 atomic regions from SNP 93311 to 93911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,668 DEBUG Processing 364/599 atomic regions from SNP 109040 to 109640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,673 DEBUG Processing 548/664 atomic regions from SNP 164327 to 164927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,779 DEBUG Processing 313/562 atomic regions from SNP 93611 to 94211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,857 DEBUG Processing 365/599 atomic regions from SNP 109340 to 109940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,890 DEBUG Processing 549/664 atomic regions from SNP 164627 to 165227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,966 DEBUG Processing 314/562 atomic regions from SNP 93911 to 94511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,042 DEBUG Processing 366/599 atomic regions from SNP 109640 to 110240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,115 DEBUG Processing 550/664 atomic regions from SNP 164927 to 165527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,170 DEBUG Processing 315/562 atomic regions from SNP 94211 to 94811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,229 DEBUG Processing 367/599 atomic regions from SNP 109940 to 110540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,333 DEBUG Processing 551/664 atomic regions from SNP 165227 to 165827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,383 DEBUG Processing 316/562 atomic regions from SNP 94511 to 95111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,414 DEBUG Processing 368/599 atomic regions from SNP 110240 to 110840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,560 DEBUG Processing 552/664 atomic regions from SNP 165527 to 166127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,569 DEBUG Processing 317/562 atomic regions from SNP 94811 to 95411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,599 DEBUG Processing 369/599 atomic regions from SNP 110540 to 111140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,746 DEBUG Processing 318/562 atomic regions from SNP 95111 to 95711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,768 DEBUG Processing 553/664 atomic regions from SNP 165827 to 166427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,781 DEBUG Processing 370/599 atomic regions from SNP 110840 to 111440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,925 DEBUG Processing 319/562 atomic regions from SNP 95411 to 96011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,963 DEBUG Processing 554/664 atomic regions from SNP 166127 to 166727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,963 DEBUG Processing 371/599 atomic regions from SNP 111140 to 111740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,102 DEBUG Processing 320/562 atomic regions from SNP 95711 to 96311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,148 DEBUG Processing 372/599 atomic regions from SNP 111440 to 112040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,160 DEBUG Processing 555/664 atomic regions from SNP 166427 to 167027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,293 DEBUG Processing 321/562 atomic regions from SNP 96011 to 96611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,355 DEBUG Processing 556/664 atomic regions from SNP 166727 to 167327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,365 DEBUG Processing 373/599 atomic regions from SNP 111740 to 112340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,481 DEBUG Processing 322/562 atomic regions from SNP 96311 to 96911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,557 DEBUG Processing 374/599 atomic regions from SNP 112040 to 112640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,565 DEBUG Processing 557/664 atomic regions from SNP 167027 to 167627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,674 DEBUG Processing 323/562 atomic regions from SNP 96611 to 97211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,770 DEBUG Processing 375/599 atomic regions from SNP 112340 to 112940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,783 DEBUG Processing 558/664 atomic regions from SNP 167327 to 167927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,852 DEBUG Processing 324/562 atomic regions from SNP 96911 to 97511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,962 DEBUG Processing 376/599 atomic regions from SNP 112640 to 113240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,981 DEBUG Processing 559/664 atomic regions from SNP 167627 to 168227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,029 DEBUG Processing 325/562 atomic regions from SNP 97211 to 97811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,153 DEBUG Processing 377/599 atomic regions from SNP 112940 to 113540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,213 DEBUG Processing 560/664 atomic regions from SNP 167927 to 168527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,221 DEBUG Processing 326/562 atomic regions from SNP 97511 to 98111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,343 DEBUG Processing 378/599 atomic regions from SNP 113240 to 113840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,407 DEBUG Processing 327/562 atomic regions from SNP 97811 to 98411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,441 DEBUG Processing 561/664 atomic regions from SNP 168227 to 168827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,526 DEBUG Processing 379/599 atomic regions from SNP 113540 to 114140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,586 DEBUG Processing 328/562 atomic regions from SNP 98111 to 98711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,664 DEBUG Processing 562/664 atomic regions from SNP 168527 to 169127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,712 DEBUG Processing 380/599 atomic regions from SNP 113840 to 114440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,765 DEBUG Processing 329/562 atomic regions from SNP 98411 to 99011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,883 DEBUG Processing 563/664 atomic regions from SNP 168827 to 169427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,904 DEBUG Processing 381/599 atomic regions from SNP 114140 to 114740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,973 DEBUG Processing 330/562 atomic regions from SNP 98711 to 99311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,092 DEBUG Processing 564/664 atomic regions from SNP 169127 to 169727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,110 DEBUG Processing 382/599 atomic regions from SNP 114440 to 115040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,194 DEBUG Processing 331/562 atomic regions from SNP 99011 to 99611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,299 DEBUG Processing 565/664 atomic regions from SNP 169427 to 170027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,306 DEBUG Processing 383/599 atomic regions from SNP 114740 to 115340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,379 DEBUG Processing 332/562 atomic regions from SNP 99311 to 99911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,503 DEBUG Processing 384/599 atomic regions from SNP 115040 to 115640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,521 DEBUG Processing 566/664 atomic regions from SNP 169727 to 170327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,566 DEBUG Processing 333/562 atomic regions from SNP 99611 to 100211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,700 DEBUG Processing 385/599 atomic regions from SNP 115340 to 115940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,743 DEBUG Processing 567/664 atomic regions from SNP 170027 to 170627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,758 DEBUG Processing 334/562 atomic regions from SNP 99911 to 100511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,896 DEBUG Processing 386/599 atomic regions from SNP 115640 to 116240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,944 DEBUG Processing 568/664 atomic regions from SNP 170327 to 170927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,948 DEBUG Processing 335/562 atomic regions from SNP 100211 to 100811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,085 DEBUG Processing 387/599 atomic regions from SNP 115940 to 116540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,134 DEBUG Processing 336/562 atomic regions from SNP 100511 to 101111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,144 DEBUG Processing 569/664 atomic regions from SNP 170627 to 171227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,273 DEBUG Processing 388/599 atomic regions from SNP 116240 to 116840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,320 DEBUG Processing 337/562 atomic regions from SNP 100811 to 101411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,343 DEBUG Processing 570/664 atomic regions from SNP 170927 to 171527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,463 DEBUG Processing 389/599 atomic regions from SNP 116540 to 117140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,509 DEBUG Processing 338/562 atomic regions from SNP 101111 to 101711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,542 DEBUG Processing 571/664 atomic regions from SNP 171227 to 171827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,648 DEBUG Processing 390/599 atomic regions from SNP 116840 to 117440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,697 DEBUG Processing 339/562 atomic regions from SNP 101411 to 102011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,741 DEBUG Processing 572/664 atomic regions from SNP 171527 to 172127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,835 DEBUG Processing 391/599 atomic regions from SNP 117140 to 117740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,896 DEBUG Processing 340/562 atomic regions from SNP 101711 to 102311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,945 DEBUG Processing 573/664 atomic regions from SNP 171827 to 172427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,030 DEBUG Processing 392/599 atomic regions from SNP 117440 to 118040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,094 DEBUG Processing 341/562 atomic regions from SNP 102011 to 102611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,155 DEBUG Processing 574/664 atomic regions from SNP 172127 to 172727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,218 DEBUG Processing 393/599 atomic regions from SNP 117740 to 118340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,286 DEBUG Processing 342/562 atomic regions from SNP 102311 to 102911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,375 DEBUG Processing 575/664 atomic regions from SNP 172427 to 173027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,409 DEBUG Processing 394/599 atomic regions from SNP 118040 to 118640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,477 DEBUG Processing 343/562 atomic regions from SNP 102611 to 103211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,602 DEBUG Processing 395/599 atomic regions from SNP 118340 to 118940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,606 DEBUG Processing 576/664 atomic regions from SNP 172727 to 173327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,670 DEBUG Processing 344/562 atomic regions from SNP 102911 to 103511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,797 DEBUG Processing 396/599 atomic regions from SNP 118640 to 119240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,813 DEBUG Processing 577/664 atomic regions from SNP 173027 to 173627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,860 DEBUG Processing 345/562 atomic regions from SNP 103211 to 103811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,926 DEBUG Segmenting atomic regions: 2025-01-31 09:56:37,994 DEBUG Processing 397/599 atomic regions from SNP 118940 to 119540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,994 DEBUG Processing 1/534 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,022 DEBUG Processing 578/664 atomic regions from SNP 173327 to 173927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,046 DEBUG Processing 346/562 atomic regions from SNP 103511 to 104111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,203 DEBUG Processing 2/534 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,203 DEBUG Processing 398/599 atomic regions from SNP 119240 to 119840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,236 DEBUG Processing 579/664 atomic regions from SNP 173627 to 174227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,243 DEBUG Processing 347/562 atomic regions from SNP 103811 to 104411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,402 DEBUG Processing 3/534 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,412 DEBUG Processing 399/599 atomic regions from SNP 119540 to 120140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,445 DEBUG Processing 348/562 atomic regions from SNP 104111 to 104711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,476 DEBUG Processing 580/664 atomic regions from SNP 173927 to 174527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,598 DEBUG Processing 4/534 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,620 DEBUG Processing 400/599 atomic regions from SNP 119840 to 120440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,647 DEBUG Processing 349/562 atomic regions from SNP 104411 to 105011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,709 DEBUG Processing 581/664 atomic regions from SNP 174227 to 174827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,786 DEBUG Processing 5/534 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,818 DEBUG Processing 401/599 atomic regions from SNP 120140 to 120740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,842 DEBUG Processing 350/562 atomic regions from SNP 104711 to 105311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,948 DEBUG Processing 582/664 atomic regions from SNP 174527 to 175127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,970 DEBUG Processing 6/534 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,017 DEBUG Processing 402/599 atomic regions from SNP 120440 to 121040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,035 DEBUG Processing 351/562 atomic regions from SNP 105011 to 105611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,157 DEBUG Processing 7/534 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,168 DEBUG Processing 583/664 atomic regions from SNP 174827 to 175427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,215 DEBUG Processing 403/599 atomic regions from SNP 120740 to 121340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,228 DEBUG Processing 352/562 atomic regions from SNP 105311 to 105911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,342 DEBUG Processing 8/534 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,381 DEBUG Processing 584/664 atomic regions from SNP 175127 to 175727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,412 DEBUG Processing 404/599 atomic regions from SNP 121040 to 121640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,421 DEBUG Processing 353/562 atomic regions from SNP 105611 to 106211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,528 DEBUG Processing 9/534 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,595 DEBUG Processing 585/664 atomic regions from SNP 175427 to 176027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,615 DEBUG Processing 405/599 atomic regions from SNP 121340 to 121940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,620 DEBUG Processing 354/562 atomic regions from SNP 105911 to 106511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,711 DEBUG Processing 10/534 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,807 DEBUG Processing 586/664 atomic regions from SNP 175727 to 176327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,812 DEBUG Processing 406/599 atomic regions from SNP 121640 to 122240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,815 DEBUG Processing 355/562 atomic regions from SNP 106211 to 106811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,899 DEBUG Processing 11/534 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,009 DEBUG Processing 407/599 atomic regions from SNP 121940 to 122540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,010 DEBUG Processing 356/562 atomic regions from SNP 106511 to 107111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,018 DEBUG Processing 587/664 atomic regions from SNP 176027 to 176627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,082 DEBUG Processing 12/534 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,203 DEBUG Processing 357/562 atomic regions from SNP 106811 to 107411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,207 DEBUG Processing 408/599 atomic regions from SNP 122240 to 122840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,226 DEBUG Processing 588/664 atomic regions from SNP 176327 to 176927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,289 DEBUG Processing 13/534 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,395 DEBUG Processing 358/562 atomic regions from SNP 107111 to 107711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,403 DEBUG Processing 409/599 atomic regions from SNP 122540 to 123140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,436 DEBUG Processing 589/664 atomic regions from SNP 176627 to 177227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,494 DEBUG Processing 14/534 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,581 DEBUG Processing 359/562 atomic regions from SNP 107411 to 108011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,620 DEBUG Processing 410/599 atomic regions from SNP 122840 to 123440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,638 DEBUG Processing 590/664 atomic regions from SNP 176927 to 177527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,683 DEBUG Processing 15/534 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,772 DEBUG Processing 360/562 atomic regions from SNP 107711 to 108311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,830 DEBUG Processing 411/599 atomic regions from SNP 123140 to 123740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,847 DEBUG Processing 591/664 atomic regions from SNP 177227 to 177827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,891 DEBUG Processing 16/534 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,962 DEBUG Processing 361/562 atomic regions from SNP 108011 to 108611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,028 DEBUG Processing 412/599 atomic regions from SNP 123440 to 124040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,056 DEBUG Processing 592/664 atomic regions from SNP 177527 to 178127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,081 DEBUG Processing 17/534 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,151 DEBUG Processing 362/562 atomic regions from SNP 108311 to 108911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,240 DEBUG Processing 413/599 atomic regions from SNP 123740 to 124340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,260 DEBUG Processing 593/664 atomic regions from SNP 177827 to 178427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,286 DEBUG Processing 18/534 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,343 DEBUG Processing 363/562 atomic regions from SNP 108611 to 109211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,463 DEBUG Processing 594/664 atomic regions from SNP 178127 to 178727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,467 DEBUG Processing 414/599 atomic regions from SNP 124040 to 124640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,487 DEBUG Processing 19/534 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,542 DEBUG Processing 364/562 atomic regions from SNP 108911 to 109511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,668 DEBUG Processing 595/664 atomic regions from SNP 178427 to 179027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,685 DEBUG Processing 20/534 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,686 DEBUG Processing 415/599 atomic regions from SNP 124340 to 124940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,743 DEBUG Processing 365/562 atomic regions from SNP 109211 to 109811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,877 DEBUG Processing 596/664 atomic regions from SNP 178727 to 179327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,888 DEBUG Processing 416/599 atomic regions from SNP 124640 to 125240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,889 DEBUG Processing 21/534 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,945 DEBUG Processing 366/562 atomic regions from SNP 109511 to 110111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,079 DEBUG Processing 597/664 atomic regions from SNP 179027 to 179627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,083 DEBUG Processing 417/599 atomic regions from SNP 124940 to 125540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,096 DEBUG Processing 22/534 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,142 DEBUG Processing 367/562 atomic regions from SNP 109811 to 110411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,281 DEBUG Processing 418/599 atomic regions from SNP 125240 to 125840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,282 DEBUG Processing 598/664 atomic regions from SNP 179327 to 179927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,285 DEBUG Processing 23/534 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,340 DEBUG Processing 368/562 atomic regions from SNP 110111 to 110711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,473 DEBUG Processing 24/534 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,479 DEBUG Processing 419/599 atomic regions from SNP 125540 to 126140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,487 DEBUG Processing 599/664 atomic regions from SNP 179627 to 180227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,539 DEBUG Processing 369/562 atomic regions from SNP 110411 to 111011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,660 DEBUG Processing 25/534 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,693 DEBUG Processing 420/599 atomic regions from SNP 125840 to 126440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,714 DEBUG Processing 600/664 atomic regions from SNP 179927 to 180527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,733 DEBUG Processing 370/562 atomic regions from SNP 110711 to 111311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,849 DEBUG Processing 26/534 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,918 DEBUG Processing 421/599 atomic regions from SNP 126140 to 126740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,927 DEBUG Processing 601/664 atomic regions from SNP 180227 to 180827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,931 DEBUG Processing 371/562 atomic regions from SNP 111011 to 111611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,034 DEBUG Processing 27/534 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,120 DEBUG Processing 422/599 atomic regions from SNP 126440 to 127040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,127 DEBUG Processing 372/562 atomic regions from SNP 111311 to 111911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,130 DEBUG Processing 602/664 atomic regions from SNP 180527 to 181127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,230 DEBUG Processing 28/534 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,320 DEBUG Processing 423/599 atomic regions from SNP 126740 to 127340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,321 DEBUG Processing 373/562 atomic regions from SNP 111611 to 112211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,333 DEBUG Processing 603/664 atomic regions from SNP 180827 to 181427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,422 DEBUG Processing 29/534 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,515 DEBUG Processing 424/599 atomic regions from SNP 127040 to 127640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,516 DEBUG Processing 374/562 atomic regions from SNP 111911 to 112511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,533 DEBUG Processing 604/664 atomic regions from SNP 181127 to 181727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,612 DEBUG Processing 30/534 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,707 DEBUG Processing 375/562 atomic regions from SNP 112211 to 112811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,717 DEBUG Processing 425/599 atomic regions from SNP 127340 to 127940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,737 DEBUG Processing 605/664 atomic regions from SNP 181427 to 182027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,802 DEBUG Processing 31/534 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,899 DEBUG Processing 376/562 atomic regions from SNP 112511 to 113111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,934 DEBUG Processing 426/599 atomic regions from SNP 127640 to 128240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,941 DEBUG Processing 606/664 atomic regions from SNP 181727 to 182327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,987 DEBUG Processing 32/534 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,090 DEBUG Processing 377/562 atomic regions from SNP 112811 to 113411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,147 DEBUG Processing 607/664 atomic regions from SNP 182027 to 182627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,163 DEBUG Processing 427/599 atomic regions from SNP 127940 to 128540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,179 DEBUG Processing 33/534 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,280 DEBUG Processing 378/562 atomic regions from SNP 113111 to 113711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,353 DEBUG Processing 608/664 atomic regions from SNP 182327 to 182927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,363 DEBUG Processing 34/534 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,397 DEBUG Processing 428/599 atomic regions from SNP 128240 to 128840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,467 DEBUG Processing 379/562 atomic regions from SNP 113411 to 114011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,549 DEBUG Processing 35/534 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,557 DEBUG Processing 609/664 atomic regions from SNP 182627 to 183227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,630 DEBUG Processing 429/599 atomic regions from SNP 128540 to 129140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,658 DEBUG Processing 380/562 atomic regions from SNP 113711 to 114311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,734 DEBUG Processing 36/534 atomic regions from SNP 10535 to 11135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,793 DEBUG Processing 610/664 atomic regions from SNP 182927 to 183527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,853 DEBUG Processing 381/562 atomic regions from SNP 114011 to 114611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,865 DEBUG Processing 430/599 atomic regions from SNP 128840 to 129440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,918 DEBUG Processing 37/534 atomic regions from SNP 10835 to 11435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,039 DEBUG Processing 611/664 atomic regions from SNP 183227 to 183827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,048 DEBUG Processing 382/562 atomic regions from SNP 114311 to 114911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,102 DEBUG Processing 38/534 atomic regions from SNP 11135 to 11735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,102 DEBUG Processing 431/599 atomic regions from SNP 129140 to 129740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,246 DEBUG Processing 383/562 atomic regions from SNP 114611 to 115211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,284 DEBUG Processing 612/664 atomic regions from SNP 183527 to 184127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,294 DEBUG Processing 39/534 atomic regions from SNP 11435 to 12035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,340 DEBUG Processing 432/599 atomic regions from SNP 129440 to 130040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,437 DEBUG Processing 384/562 atomic regions from SNP 114911 to 115511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,485 DEBUG Processing 40/534 atomic regions from SNP 11735 to 12335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,524 DEBUG Processing 613/664 atomic regions from SNP 183827 to 184427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,571 DEBUG Processing 433/599 atomic regions from SNP 129740 to 130340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,625 DEBUG Processing 385/562 atomic regions from SNP 115211 to 115811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,668 DEBUG Processing 41/534 atomic regions from SNP 12035 to 12635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,759 DEBUG Processing 614/664 atomic regions from SNP 184127 to 184727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,805 DEBUG Processing 434/599 atomic regions from SNP 130040 to 130640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,819 DEBUG Processing 386/562 atomic regions from SNP 115511 to 116111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,861 DEBUG Processing 42/534 atomic regions from SNP 12335 to 12935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,983 DEBUG Processing 615/664 atomic regions from SNP 184427 to 185027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,017 DEBUG Processing 387/562 atomic regions from SNP 115811 to 116411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,032 DEBUG Processing 435/599 atomic regions from SNP 130340 to 130940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,055 DEBUG Processing 43/534 atomic regions from SNP 12635 to 13235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,212 DEBUG Processing 388/562 atomic regions from SNP 116111 to 116711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,218 DEBUG Processing 616/664 atomic regions from SNP 184727 to 185327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,246 DEBUG Processing 44/534 atomic regions from SNP 12935 to 13535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,266 DEBUG Processing 436/599 atomic regions from SNP 130640 to 131240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,401 DEBUG Processing 389/562 atomic regions from SNP 116411 to 117011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,433 DEBUG Processing 45/534 atomic regions from SNP 13235 to 13835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,457 DEBUG Processing 617/664 atomic regions from SNP 185027 to 185627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,500 DEBUG Processing 437/599 atomic regions from SNP 130940 to 131540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,601 DEBUG Processing 390/562 atomic regions from SNP 116711 to 117311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,623 DEBUG Processing 46/534 atomic regions from SNP 13535 to 14135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,697 DEBUG Processing 618/664 atomic regions from SNP 185327 to 185927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,714 DEBUG Processing 438/599 atomic regions from SNP 131240 to 131840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,797 DEBUG Processing 391/562 atomic regions from SNP 117011 to 117611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,817 DEBUG Processing 47/534 atomic regions from SNP 13835 to 14435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,932 DEBUG Processing 619/664 atomic regions from SNP 185627 to 186227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,959 DEBUG Processing 439/599 atomic regions from SNP 131540 to 132140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,990 DEBUG Processing 392/562 atomic regions from SNP 117311 to 117911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,003 DEBUG Processing 48/534 atomic regions from SNP 14135 to 14735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,150 DEBUG Processing 620/664 atomic regions from SNP 185927 to 186527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,187 DEBUG Processing 393/562 atomic regions from SNP 117611 to 118211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,190 DEBUG Processing 440/599 atomic regions from SNP 131840 to 132440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,196 DEBUG Processing 49/534 atomic regions from SNP 14435 to 15035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,368 DEBUG Processing 621/664 atomic regions from SNP 186227 to 186827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,388 DEBUG Processing 394/562 atomic regions from SNP 117911 to 118511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,395 DEBUG Processing 50/534 atomic regions from SNP 14735 to 15335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,423 DEBUG Processing 441/599 atomic regions from SNP 132140 to 132740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,581 DEBUG Processing 622/664 atomic regions from SNP 186527 to 187127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,589 DEBUG Processing 395/562 atomic regions from SNP 118211 to 118811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,592 DEBUG Processing 51/534 atomic regions from SNP 15035 to 15635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,661 DEBUG Processing 442/599 atomic regions from SNP 132440 to 133040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,789 DEBUG Processing 52/534 atomic regions from SNP 15335 to 15935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,791 DEBUG Processing 396/562 atomic regions from SNP 118511 to 119111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,809 DEBUG Processing 623/664 atomic regions from SNP 186827 to 187427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,902 DEBUG Processing 443/599 atomic regions from SNP 132740 to 133340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,991 DEBUG Processing 397/562 atomic regions from SNP 118811 to 119411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,991 DEBUG Processing 53/534 atomic regions from SNP 15635 to 16235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,044 DEBUG Processing 624/664 atomic regions from SNP 187127 to 187727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,123 DEBUG Processing 444/599 atomic regions from SNP 133040 to 133640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,190 DEBUG Processing 54/534 atomic regions from SNP 15935 to 16535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,206 DEBUG Processing 398/562 atomic regions from SNP 119111 to 119711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,283 DEBUG Processing 625/664 atomic regions from SNP 187427 to 188027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,347 DEBUG Processing 445/599 atomic regions from SNP 133340 to 133940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,379 DEBUG Processing 55/534 atomic regions from SNP 16235 to 16835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,402 DEBUG Processing 399/562 atomic regions from SNP 119411 to 120011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,517 DEBUG Processing 626/664 atomic regions from SNP 187727 to 188327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,588 DEBUG Processing 56/534 atomic regions from SNP 16535 to 17135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,588 DEBUG Processing 446/599 atomic regions from SNP 133640 to 134240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,604 DEBUG Processing 400/562 atomic regions from SNP 119711 to 120311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,759 DEBUG Processing 627/664 atomic regions from SNP 188027 to 188627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,798 DEBUG Processing 57/534 atomic regions from SNP 16835 to 17435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,804 DEBUG Processing 401/562 atomic regions from SNP 120011 to 120611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,829 DEBUG Processing 447/599 atomic regions from SNP 133940 to 134540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,999 DEBUG Processing 58/534 atomic regions from SNP 17135 to 17735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,000 DEBUG Processing 402/562 atomic regions from SNP 120311 to 120911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,003 DEBUG Processing 628/664 atomic regions from SNP 188327 to 188927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,070 DEBUG Processing 448/599 atomic regions from SNP 134240 to 134840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,187 DEBUG Processing 59/534 atomic regions from SNP 17435 to 18035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,196 DEBUG Processing 403/562 atomic regions from SNP 120611 to 121211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,208 DEBUG Processing 629/664 atomic regions from SNP 188627 to 189227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,308 DEBUG Processing 449/599 atomic regions from SNP 134540 to 135140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,375 DEBUG Processing 60/534 atomic regions from SNP 17735 to 18335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,393 DEBUG Processing 404/562 atomic regions from SNP 120911 to 121511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,412 DEBUG Processing 630/664 atomic regions from SNP 188927 to 189527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,549 DEBUG Processing 450/599 atomic regions from SNP 134840 to 135440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,568 DEBUG Processing 61/534 atomic regions from SNP 18035 to 18635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,590 DEBUG Processing 405/562 atomic regions from SNP 121211 to 121811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,616 DEBUG Processing 631/664 atomic regions from SNP 189227 to 189827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,761 DEBUG Processing 62/534 atomic regions from SNP 18335 to 18935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,784 DEBUG Processing 406/562 atomic regions from SNP 121511 to 122111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,790 DEBUG Processing 451/599 atomic regions from SNP 135140 to 135740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,820 DEBUG Processing 632/664 atomic regions from SNP 189527 to 190127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,950 DEBUG Processing 63/534 atomic regions from SNP 18635 to 19235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,983 DEBUG Processing 407/562 atomic regions from SNP 121811 to 122411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,017 DEBUG Processing 633/664 atomic regions from SNP 189827 to 190427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,029 DEBUG Processing 452/599 atomic regions from SNP 135440 to 136040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,139 DEBUG Processing 64/534 atomic regions from SNP 18935 to 19535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,183 DEBUG Processing 408/562 atomic regions from SNP 122111 to 122711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,222 DEBUG Processing 634/664 atomic regions from SNP 190127 to 190727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,272 DEBUG Processing 453/599 atomic regions from SNP 135740 to 136340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,328 DEBUG Processing 65/534 atomic regions from SNP 19235 to 19835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,382 DEBUG Processing 409/562 atomic regions from SNP 122411 to 123011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,426 DEBUG Processing 635/664 atomic regions from SNP 190427 to 191027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,509 DEBUG Processing 454/599 atomic regions from SNP 136040 to 136640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,532 DEBUG Processing 66/534 atomic regions from SNP 19535 to 20135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,576 DEBUG Processing 410/562 atomic regions from SNP 122711 to 123311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,628 DEBUG Processing 636/664 atomic regions from SNP 190727 to 191327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,718 DEBUG Processing 67/534 atomic regions from SNP 19835 to 20435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,734 DEBUG Processing 455/599 atomic regions from SNP 136340 to 136940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,776 DEBUG Processing 411/562 atomic regions from SNP 123011 to 123611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,837 DEBUG Processing 637/664 atomic regions from SNP 191027 to 191627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,912 DEBUG Processing 68/534 atomic regions from SNP 20135 to 20735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,966 DEBUG Processing 456/599 atomic regions from SNP 136640 to 137240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,976 DEBUG Processing 412/562 atomic regions from SNP 123311 to 123911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,040 DEBUG Processing 638/664 atomic regions from SNP 191327 to 191927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,103 DEBUG Processing 69/534 atomic regions from SNP 20435 to 21035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,180 DEBUG Processing 413/562 atomic regions from SNP 123611 to 124211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,210 DEBUG Processing 457/599 atomic regions from SNP 136940 to 137540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,246 DEBUG Processing 639/664 atomic regions from SNP 191627 to 192227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,284 DEBUG Processing 70/534 atomic regions from SNP 20735 to 21335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,382 DEBUG Processing 414/562 atomic regions from SNP 123911 to 124511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,454 DEBUG Processing 640/664 atomic regions from SNP 191927 to 192527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,457 DEBUG Processing 458/599 atomic regions from SNP 137240 to 137840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,474 DEBUG Processing 71/534 atomic regions from SNP 21035 to 21635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,583 DEBUG Processing 415/562 atomic regions from SNP 124211 to 124811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,657 DEBUG Processing 641/664 atomic regions from SNP 192227 to 192827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,666 DEBUG Processing 72/534 atomic regions from SNP 21335 to 21935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,693 DEBUG Processing 459/599 atomic regions from SNP 137540 to 138140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,776 DEBUG Processing 416/562 atomic regions from SNP 124511 to 125111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,858 DEBUG Processing 642/664 atomic regions from SNP 192527 to 193127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,859 DEBUG Processing 73/534 atomic regions from SNP 21635 to 22235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,927 DEBUG Processing 460/599 atomic regions from SNP 137840 to 138440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,972 DEBUG Processing 417/562 atomic regions from SNP 124811 to 125411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,048 DEBUG Processing 74/534 atomic regions from SNP 21935 to 22535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,060 DEBUG Processing 643/664 atomic regions from SNP 192827 to 193427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,157 DEBUG Processing 461/599 atomic regions from SNP 138140 to 138740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,173 DEBUG Processing 418/562 atomic regions from SNP 125111 to 125711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,237 DEBUG Processing 75/534 atomic regions from SNP 22235 to 22835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,278 DEBUG Processing 644/664 atomic regions from SNP 193127 to 193727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,378 DEBUG Processing 419/562 atomic regions from SNP 125411 to 126011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,409 DEBUG Processing 462/599 atomic regions from SNP 138440 to 139040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,429 DEBUG Processing 76/534 atomic regions from SNP 22535 to 23135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,480 DEBUG Processing 645/664 atomic regions from SNP 193427 to 194027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,576 DEBUG Processing 420/562 atomic regions from SNP 125711 to 126311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,615 DEBUG Processing 77/534 atomic regions from SNP 22835 to 23435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,648 DEBUG Processing 463/599 atomic regions from SNP 138740 to 139340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,680 DEBUG Processing 646/664 atomic regions from SNP 193727 to 194327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,774 DEBUG Processing 421/562 atomic regions from SNP 126011 to 126611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,804 DEBUG Processing 78/534 atomic regions from SNP 23135 to 23735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,875 DEBUG Processing 647/664 atomic regions from SNP 194027 to 194627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,878 DEBUG Processing 464/599 atomic regions from SNP 139040 to 139640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,966 DEBUG Processing 422/562 atomic regions from SNP 126311 to 126911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,008 DEBUG Processing 79/534 atomic regions from SNP 23435 to 24035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,072 DEBUG Processing 648/664 atomic regions from SNP 194327 to 194927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,107 DEBUG Processing 465/599 atomic regions from SNP 139340 to 139940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,157 DEBUG Processing 423/562 atomic regions from SNP 126611 to 127211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,222 DEBUG Processing 80/534 atomic regions from SNP 23735 to 24335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,285 DEBUG Processing 649/664 atomic regions from SNP 194627 to 195227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,343 DEBUG Processing 466/599 atomic regions from SNP 139640 to 140240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,347 DEBUG Processing 424/562 atomic regions from SNP 126911 to 127511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,407 DEBUG Processing 81/534 atomic regions from SNP 24035 to 24635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,501 DEBUG Processing 650/664 atomic regions from SNP 194927 to 195527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,538 DEBUG Processing 425/562 atomic regions from SNP 127211 to 127811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,576 DEBUG Processing 467/599 atomic regions from SNP 139940 to 140540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,596 DEBUG Processing 82/534 atomic regions from SNP 24335 to 24935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,704 DEBUG Processing 651/664 atomic regions from SNP 195227 to 195827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,736 DEBUG Processing 426/562 atomic regions from SNP 127511 to 128111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,782 DEBUG Processing 83/534 atomic regions from SNP 24635 to 25235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,800 DEBUG Processing 468/599 atomic regions from SNP 140240 to 140840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,907 DEBUG Processing 652/664 atomic regions from SNP 195527 to 196127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,933 DEBUG Processing 427/562 atomic regions from SNP 127811 to 128411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,971 DEBUG Processing 84/534 atomic regions from SNP 24935 to 25535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,003 DEBUG Processing 469/599 atomic regions from SNP 140540 to 141140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,113 DEBUG Processing 653/664 atomic regions from SNP 195827 to 196427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,131 DEBUG Processing 428/562 atomic regions from SNP 128111 to 128711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,161 DEBUG Processing 85/534 atomic regions from SNP 25235 to 25835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,205 DEBUG Processing 470/599 atomic regions from SNP 140840 to 141440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,326 DEBUG Processing 654/664 atomic regions from SNP 196127 to 196727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,329 DEBUG Processing 429/562 atomic regions from SNP 128411 to 129011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,349 DEBUG Processing 86/534 atomic regions from SNP 25535 to 26135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,426 DEBUG Processing 471/599 atomic regions from SNP 141140 to 141740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,523 DEBUG Processing 430/562 atomic regions from SNP 128711 to 129311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,533 DEBUG Processing 655/664 atomic regions from SNP 196427 to 197027 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,533 DEBUG Processing 87/534 atomic regions from SNP 25835 to 26435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,658 DEBUG Processing 472/599 atomic regions from SNP 141440 to 142040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,724 DEBUG Processing 431/562 atomic regions from SNP 129011 to 129611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,728 DEBUG Processing 88/534 atomic regions from SNP 26135 to 26735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,766 DEBUG Processing 656/664 atomic regions from SNP 196727 to 197327 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,886 DEBUG Processing 473/599 atomic regions from SNP 141740 to 142340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,926 DEBUG Processing 89/534 atomic regions from SNP 26435 to 27035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,928 DEBUG Processing 432/562 atomic regions from SNP 129311 to 129911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,981 DEBUG Processing 657/664 atomic regions from SNP 197027 to 197627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,120 DEBUG Processing 90/534 atomic regions from SNP 26735 to 27335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,121 DEBUG Processing 474/599 atomic regions from SNP 142040 to 142640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,158 DEBUG Processing 433/562 atomic regions from SNP 129611 to 130211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,190 DEBUG Processing 658/664 atomic regions from SNP 197327 to 197927 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,309 DEBUG Processing 91/534 atomic regions from SNP 27035 to 27635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,362 DEBUG Processing 475/599 atomic regions from SNP 142340 to 142940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,363 DEBUG Processing 434/562 atomic regions from SNP 129911 to 130511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,404 DEBUG Processing 659/664 atomic regions from SNP 197627 to 198227 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,494 DEBUG Processing 92/534 atomic regions from SNP 27335 to 27935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,563 DEBUG Processing 435/562 atomic regions from SNP 130211 to 130811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,582 DEBUG Processing 476/599 atomic regions from SNP 142640 to 143240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,616 DEBUG Processing 660/664 atomic regions from SNP 197927 to 198527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,677 DEBUG Processing 93/534 atomic regions from SNP 27635 to 28235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,774 DEBUG Processing 436/562 atomic regions from SNP 130511 to 131111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,794 DEBUG Processing 477/599 atomic regions from SNP 142940 to 143540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,826 DEBUG Processing 661/664 atomic regions from SNP 198227 to 198827 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,873 DEBUG Processing 94/534 atomic regions from SNP 27935 to 28535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,007 DEBUG Processing 437/562 atomic regions from SNP 130811 to 131411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,012 DEBUG Processing 478/599 atomic regions from SNP 143240 to 143840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,027 DEBUG Processing 662/664 atomic regions from SNP 198527 to 199127 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,062 DEBUG Processing 95/534 atomic regions from SNP 28235 to 28835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,216 DEBUG Processing 438/562 atomic regions from SNP 131111 to 131711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,226 DEBUG Processing 663/664 atomic regions from SNP 198827 to 199427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,243 DEBUG Processing 479/599 atomic regions from SNP 143540 to 144140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,252 DEBUG Processing 96/534 atomic regions from SNP 28535 to 29135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,416 DEBUG Processing 439/562 atomic regions from SNP 131411 to 132011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,425 DEBUG Processing 664/664 atomic regions from SNP 199127 to 199727 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,448 DEBUG Processing 97/534 atomic regions from SNP 28835 to 29435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,464 DEBUG Processing 480/599 atomic regions from SNP 143840 to 144440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,548 DEBUG Unique SNPs positions in subchromosome 1: 199728 2025-01-31 09:56:56,618 DEBUG Processing 440/562 atomic regions from SNP 131711 to 132311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,643 DEBUG Processing 98/534 atomic regions from SNP 29135 to 29735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,680 DEBUG Processing 481/599 atomic regions from SNP 144140 to 144740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,812 DEBUG Processing 441/562 atomic regions from SNP 132011 to 132611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,835 DEBUG Processing 99/534 atomic regions from SNP 29435 to 30035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,911 DEBUG Processing 482/599 atomic regions from SNP 144440 to 145040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,025 DEBUG Processing 442/562 atomic regions from SNP 132311 to 132911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,038 DEBUG Processing 100/534 atomic regions from SNP 29735 to 30335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,141 DEBUG Processing 483/599 atomic regions from SNP 144740 to 145340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,218 DEBUG Processing 443/562 atomic regions from SNP 132611 to 133211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,226 DEBUG Processing 101/534 atomic regions from SNP 30035 to 30635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,358 DEBUG Processing 484/599 atomic regions from SNP 145040 to 145640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,412 DEBUG Processing 102/534 atomic regions from SNP 30335 to 30935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,412 DEBUG Processing 444/562 atomic regions from SNP 132911 to 133511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,557 DEBUG Processing 485/599 atomic regions from SNP 145340 to 145940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,601 DEBUG Processing 103/534 atomic regions from SNP 30635 to 31235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,608 DEBUG Processing 445/562 atomic regions from SNP 133211 to 133811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,764 DEBUG Processing 486/599 atomic regions from SNP 145640 to 146240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,784 DEBUG Processing 104/534 atomic regions from SNP 30935 to 31535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,802 DEBUG Processing 446/562 atomic regions from SNP 133511 to 134111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,974 DEBUG Processing 105/534 atomic regions from SNP 31235 to 31835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,982 DEBUG Processing 487/599 atomic regions from SNP 145940 to 146540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,996 DEBUG Processing 447/562 atomic regions from SNP 133811 to 134411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,161 DEBUG Processing 106/534 atomic regions from SNP 31535 to 32135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,193 DEBUG Processing 448/562 atomic regions from SNP 134111 to 134711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,210 DEBUG Processing 488/599 atomic regions from SNP 146240 to 146840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,349 DEBUG Processing 107/534 atomic regions from SNP 31835 to 32435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,388 DEBUG Processing 449/562 atomic regions from SNP 134411 to 135011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,437 DEBUG Processing 489/599 atomic regions from SNP 146540 to 147140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,535 DEBUG Processing 108/534 atomic regions from SNP 32135 to 32735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,591 DEBUG Processing 450/562 atomic regions from SNP 134711 to 135311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,665 DEBUG Processing 490/599 atomic regions from SNP 146840 to 147440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,719 DEBUG Processing 109/534 atomic regions from SNP 32435 to 33035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,786 DEBUG Processing 451/562 atomic regions from SNP 135011 to 135611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,869 DEBUG Processing 491/599 atomic regions from SNP 147140 to 147740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,934 DEBUG Processing 110/534 atomic regions from SNP 32735 to 33335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,989 DEBUG Processing 452/562 atomic regions from SNP 135311 to 135911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,077 DEBUG Processing 492/599 atomic regions from SNP 147440 to 148040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,159 DEBUG Processing 111/534 atomic regions from SNP 33035 to 33635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,191 DEBUG Processing 453/562 atomic regions from SNP 135611 to 136211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,277 DEBUG Processing 493/599 atomic regions from SNP 147740 to 148340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,384 DEBUG Processing 112/534 atomic regions from SNP 33335 to 33935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,399 DEBUG Processing 454/562 atomic regions from SNP 135911 to 136511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,477 DEBUG Processing 494/599 atomic regions from SNP 148040 to 148640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,587 DEBUG Processing 113/534 atomic regions from SNP 33635 to 34235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,601 DEBUG Processing 455/562 atomic regions from SNP 136211 to 136811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,683 DEBUG Processing 495/599 atomic regions from SNP 148340 to 148940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,802 DEBUG Processing 456/562 atomic regions from SNP 136511 to 137111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,805 DEBUG Processing 114/534 atomic regions from SNP 33935 to 34535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,887 DEBUG Processing 496/599 atomic regions from SNP 148640 to 149240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,001 DEBUG Processing 457/562 atomic regions from SNP 136811 to 137411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,024 DEBUG Processing 115/534 atomic regions from SNP 34235 to 34835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,088 DEBUG Processing 497/599 atomic regions from SNP 148940 to 149540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,195 DEBUG Processing 458/562 atomic regions from SNP 137111 to 137711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,246 DEBUG Processing 116/534 atomic regions from SNP 34535 to 35135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,289 DEBUG Processing 498/599 atomic regions from SNP 149240 to 149840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,386 DEBUG Processing 459/562 atomic regions from SNP 137411 to 138011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,472 DEBUG Processing 117/534 atomic regions from SNP 34835 to 35435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,498 DEBUG Processing 499/599 atomic regions from SNP 149540 to 150140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,574 DEBUG Processing 460/562 atomic regions from SNP 137711 to 138311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,689 DEBUG Processing 118/534 atomic regions from SNP 35135 to 35735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,690 DEBUG Processing 500/599 atomic regions from SNP 149840 to 150440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,764 DEBUG Processing 461/562 atomic regions from SNP 138011 to 138611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,890 DEBUG Processing 501/599 atomic regions from SNP 150140 to 150740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,907 DEBUG Processing 119/534 atomic regions from SNP 35435 to 36035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,961 DEBUG Processing 462/562 atomic regions from SNP 138311 to 138911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,084 DEBUG Processing 502/599 atomic regions from SNP 150440 to 151040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,113 DEBUG Processing 120/534 atomic regions from SNP 35735 to 36335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,153 DEBUG Processing 463/562 atomic regions from SNP 138611 to 139211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,273 DEBUG Processing 503/599 atomic regions from SNP 150740 to 151340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,323 DEBUG Processing 121/534 atomic regions from SNP 36035 to 36635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,342 DEBUG Processing 464/562 atomic regions from SNP 138911 to 139511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,462 DEBUG Processing 504/599 atomic regions from SNP 151040 to 151640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,523 DEBUG Processing 122/534 atomic regions from SNP 36335 to 36935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,533 DEBUG Processing 465/562 atomic regions from SNP 139211 to 139811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,648 DEBUG Processing 505/599 atomic regions from SNP 151340 to 151940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,725 DEBUG Processing 466/562 atomic regions from SNP 139511 to 140111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,726 DEBUG Processing 123/534 atomic regions from SNP 36635 to 37235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,834 DEBUG Processing 506/599 atomic regions from SNP 151640 to 152240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,915 DEBUG Processing 467/562 atomic regions from SNP 139811 to 140411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,941 DEBUG Processing 124/534 atomic regions from SNP 36935 to 37535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,045 DEBUG Processing 507/599 atomic regions from SNP 151940 to 152540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,106 DEBUG Processing 468/562 atomic regions from SNP 140111 to 140711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,160 DEBUG Processing 125/534 atomic regions from SNP 37235 to 37835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,216 DEBUG Subchromosome time: 174.70054997189436, subchromosome SNPs: 199728 2025-01-31 09:57:02,217 DEBUG Estimated BADs: [3.53, 0.59, 1.76, 7.06, 1.76, 0.88, 3.53, 1.76, 5.29, 1.76, 0.44, 0.88, 3.53, 1.76, 8.82, 1.76, 3.53, 5.29, 1.76, 0.44, 1.76, 3.53, 1.76, 17.64, 1.76, 7.06, 1.76] SNP counts: [4312, 2395, 23909, 481, 21988, 25143, 1463, 4082, 873, 8060, 5706, 9829, 6385, 6764, 1060, 3748, 8219, 7557, 8647, 8100, 3434, 6567, 3825, 229, 10060, 4995, 11897] SNP IDs counts: [4312, 2395, 23909, 481, 21988, 25143, 1463, 4082, 873, 8060, 5706, 9829, 6385, 6764, 1060, 3748, 8219, 7557, 8647, 8100, 3434, 6567, 3825, 229, 10060, 4995, 11897] Critical gap: 601347bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.40Mbp, 6.81Mbp, 24.56Mbp, 24.82Mbp, 36.87Mbp, 51.69Mbp, 52.50Mbp, 54.69Mbp, 55.38Mbp, 59.97Mbp, 63.42Mbp, 69.12Mbp, 72.53Mbp, 76.18Mbp, 76.76Mbp, 78.86Mbp, 83.31Mbp, 87.26Mbp, 92.52Mbp, 97.29Mbp, 99.20Mbp, 102.78Mbp, 104.93Mbp, 105.05Mbp, 110.40Mbp, 113.01Mbp, 120.13Mbp] 2025-01-31 09:57:02,217 DEBUG chr12 time: 174.70111192495096 s 2025-01-31 09:57:02,270 DEBUG Processing 508/599 atomic regions from SNP 152240 to 152840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,297 DEBUG Processing 469/562 atomic regions from SNP 140411 to 141011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,335 DEBUG chr12: Fitting background model for 27 segments 2025-01-31 09:57:02,376 DEBUG Processing 126/534 atomic regions from SNP 37535 to 38135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,485 DEBUG Processing 470/562 atomic regions from SNP 140711 to 141311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,488 DEBUG Processing 509/599 atomic regions from SNP 152540 to 153140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,592 DEBUG Processing 127/534 atomic regions from SNP 37835 to 38435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,678 DEBUG Processing 471/562 atomic regions from SNP 141011 to 141611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,717 DEBUG Processing 510/599 atomic regions from SNP 152840 to 153440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,792 DEBUG Processing 128/534 atomic regions from SNP 38135 to 38735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,865 DEBUG Processing 472/562 atomic regions from SNP 141311 to 141911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,946 DEBUG Processing 511/599 atomic regions from SNP 153140 to 153740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,993 DEBUG Processing 129/534 atomic regions from SNP 38435 to 39035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,050 DEBUG Processing 473/562 atomic regions from SNP 141611 to 142211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,169 DEBUG Processing 512/599 atomic regions from SNP 153440 to 154040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,206 DEBUG Processing 130/534 atomic regions from SNP 38735 to 39335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,237 DEBUG Processing 474/562 atomic regions from SNP 141911 to 142511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,363 DEBUG Processing 513/599 atomic regions from SNP 153740 to 154340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,418 DEBUG Processing 131/534 atomic regions from SNP 39035 to 39635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,428 DEBUG Processing 475/562 atomic regions from SNP 142211 to 142811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,559 DEBUG Processing 514/599 atomic regions from SNP 154040 to 154640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,619 DEBUG Processing 476/562 atomic regions from SNP 142511 to 143111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,637 DEBUG Processing 132/534 atomic regions from SNP 39335 to 39935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,752 DEBUG Processing 515/599 atomic regions from SNP 154340 to 154940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,828 DEBUG Processing 477/562 atomic regions from SNP 142811 to 143411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,860 DEBUG Processing 133/534 atomic regions from SNP 39635 to 40235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,947 DEBUG Processing 516/599 atomic regions from SNP 154640 to 155240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,018 DEBUG Processing 478/562 atomic regions from SNP 143111 to 143711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,065 DEBUG Processing 134/534 atomic regions from SNP 39935 to 40535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,155 DEBUG Processing 517/599 atomic regions from SNP 154940 to 155540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,223 DEBUG Processing 479/562 atomic regions from SNP 143411 to 144011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,282 DEBUG Processing 135/534 atomic regions from SNP 40235 to 40835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,355 DEBUG Processing 518/599 atomic regions from SNP 155240 to 155840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,419 DEBUG Processing 480/562 atomic regions from SNP 143711 to 144311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,503 DEBUG Processing 136/534 atomic regions from SNP 40535 to 41135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,549 DEBUG Processing 519/599 atomic regions from SNP 155540 to 156140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,610 DEBUG Processing 481/562 atomic regions from SNP 144011 to 144611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,720 DEBUG Processing 137/534 atomic regions from SNP 40835 to 41435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,748 DEBUG Processing 520/599 atomic regions from SNP 155840 to 156440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,808 DEBUG Processing 482/562 atomic regions from SNP 144311 to 144911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,930 DEBUG Processing 138/534 atomic regions from SNP 41135 to 41735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,943 DEBUG Processing 521/599 atomic regions from SNP 156140 to 156740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,997 DEBUG Processing 483/562 atomic regions from SNP 144611 to 145211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,142 DEBUG Processing 139/534 atomic regions from SNP 41435 to 42035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,146 DEBUG Processing 522/599 atomic regions from SNP 156440 to 157040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,192 DEBUG Processing 484/562 atomic regions from SNP 144911 to 145511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,347 DEBUG Processing 523/599 atomic regions from SNP 156740 to 157340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,364 DEBUG Processing 140/534 atomic regions from SNP 41735 to 42335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,389 DEBUG Processing 485/562 atomic regions from SNP 145211 to 145811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,550 DEBUG Processing 524/599 atomic regions from SNP 157040 to 157640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,583 DEBUG Processing 141/534 atomic regions from SNP 42035 to 42635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,586 DEBUG Processing 486/562 atomic regions from SNP 145511 to 146111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,756 DEBUG Processing 525/599 atomic regions from SNP 157340 to 157940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,784 DEBUG Processing 487/562 atomic regions from SNP 145811 to 146411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,793 DEBUG Processing 142/534 atomic regions from SNP 42335 to 42935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,959 DEBUG Processing 526/599 atomic regions from SNP 157640 to 158240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,982 DEBUG Processing 488/562 atomic regions from SNP 146111 to 146711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,011 DEBUG Processing 143/534 atomic regions from SNP 42635 to 43235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,155 DEBUG Processing 527/599 atomic regions from SNP 157940 to 158540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,174 DEBUG Processing 489/562 atomic regions from SNP 146411 to 147011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,226 DEBUG Processing 144/534 atomic regions from SNP 42935 to 43535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,354 DEBUG Processing 528/599 atomic regions from SNP 158240 to 158840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,367 DEBUG Processing 490/562 atomic regions from SNP 146711 to 147311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,444 DEBUG Processing 145/534 atomic regions from SNP 43235 to 43835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,551 DEBUG Processing 529/599 atomic regions from SNP 158540 to 159140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,561 DEBUG Processing 491/562 atomic regions from SNP 147011 to 147611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,654 DEBUG Processing 146/534 atomic regions from SNP 43535 to 44135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,751 DEBUG Processing 530/599 atomic regions from SNP 158840 to 159440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,755 DEBUG Processing 492/562 atomic regions from SNP 147311 to 147911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,874 DEBUG Processing 147/534 atomic regions from SNP 43835 to 44435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,952 DEBUG Processing 493/562 atomic regions from SNP 147611 to 148211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,952 DEBUG Processing 531/599 atomic regions from SNP 159140 to 159740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,091 DEBUG Processing 148/534 atomic regions from SNP 44135 to 44735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,148 DEBUG Processing 494/562 atomic regions from SNP 147911 to 148511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,152 DEBUG Processing 532/599 atomic regions from SNP 159440 to 160040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,298 DEBUG Processing 149/534 atomic regions from SNP 44435 to 45035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,347 DEBUG Processing 495/562 atomic regions from SNP 148211 to 148811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,355 DEBUG Processing 533/599 atomic regions from SNP 159740 to 160340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,504 DEBUG Processing 150/534 atomic regions from SNP 44735 to 45335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,543 DEBUG Processing 496/562 atomic regions from SNP 148511 to 149111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,559 DEBUG Processing 534/599 atomic regions from SNP 160040 to 160640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,706 DEBUG Processing 151/534 atomic regions from SNP 45035 to 45635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,749 DEBUG Processing 497/562 atomic regions from SNP 148811 to 149411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,774 DEBUG Processing 535/599 atomic regions from SNP 160340 to 160940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,910 DEBUG Processing 152/534 atomic regions from SNP 45335 to 45935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,971 DEBUG Processing 498/562 atomic regions from SNP 149111 to 149711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,999 DEBUG Processing 536/599 atomic regions from SNP 160640 to 161240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,104 DEBUG Processing 153/534 atomic regions from SNP 45635 to 46235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,197 DEBUG Processing 499/562 atomic regions from SNP 149411 to 150011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,211 DEBUG Processing 537/599 atomic regions from SNP 160940 to 161540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,292 DEBUG Processing 154/534 atomic regions from SNP 45935 to 46535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,412 DEBUG Processing 500/562 atomic regions from SNP 149711 to 150311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,413 DEBUG Processing 538/599 atomic regions from SNP 161240 to 161840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,484 DEBUG Processing 155/534 atomic regions from SNP 46235 to 46835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,613 DEBUG Processing 501/562 atomic regions from SNP 150011 to 150611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,622 DEBUG Processing 539/599 atomic regions from SNP 161540 to 162140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,685 DEBUG Processing 156/534 atomic regions from SNP 46535 to 47135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,820 DEBUG Processing 502/562 atomic regions from SNP 150311 to 150911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,831 DEBUG Processing 540/599 atomic regions from SNP 161840 to 162440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,885 DEBUG Processing 157/534 atomic regions from SNP 46835 to 47435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,013 DEBUG Processing 503/562 atomic regions from SNP 150611 to 151211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,031 DEBUG Processing 541/599 atomic regions from SNP 162140 to 162740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,075 DEBUG Processing 158/534 atomic regions from SNP 47135 to 47735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,205 DEBUG Processing 504/562 atomic regions from SNP 150911 to 151511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,230 DEBUG Processing 542/599 atomic regions from SNP 162440 to 163040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,266 DEBUG Processing 159/534 atomic regions from SNP 47435 to 48035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,400 DEBUG Processing 505/562 atomic regions from SNP 151211 to 151811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,434 DEBUG Processing 543/599 atomic regions from SNP 162740 to 163340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,464 DEBUG Processing 160/534 atomic regions from SNP 47735 to 48335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,595 DEBUG Processing 506/562 atomic regions from SNP 151511 to 152111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,647 DEBUG Processing 544/599 atomic regions from SNP 163040 to 163640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,679 DEBUG Processing 161/534 atomic regions from SNP 48035 to 48635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,792 DEBUG Processing 507/562 atomic regions from SNP 151811 to 152411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,851 DEBUG Processing 545/599 atomic regions from SNP 163340 to 163940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,883 DEBUG Processing 162/534 atomic regions from SNP 48335 to 48935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,985 DEBUG Processing 508/562 atomic regions from SNP 152111 to 152711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,050 DEBUG Processing 546/599 atomic regions from SNP 163640 to 164240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,088 DEBUG Processing 163/534 atomic regions from SNP 48635 to 49235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,177 DEBUG Processing 509/562 atomic regions from SNP 152411 to 153011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,251 DEBUG Processing 547/599 atomic regions from SNP 163940 to 164540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,288 DEBUG Processing 164/534 atomic regions from SNP 48935 to 49535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,369 DEBUG Processing 510/562 atomic regions from SNP 152711 to 153311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,450 DEBUG Processing 548/599 atomic regions from SNP 164240 to 164840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,486 DEBUG Processing 165/534 atomic regions from SNP 49235 to 49835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,570 DEBUG Processing 511/562 atomic regions from SNP 153011 to 153611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,657 DEBUG Processing 549/599 atomic regions from SNP 164540 to 165140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,696 DEBUG Processing 166/534 atomic regions from SNP 49535 to 50135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,779 DEBUG Processing 512/562 atomic regions from SNP 153311 to 153911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,860 DEBUG Processing 550/599 atomic regions from SNP 164840 to 165440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,887 DEBUG Processing 167/534 atomic regions from SNP 49835 to 50435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,983 DEBUG Processing 513/562 atomic regions from SNP 153611 to 154211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,056 DEBUG Processing 551/599 atomic regions from SNP 165140 to 165740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,071 DEBUG Processing 168/534 atomic regions from SNP 50135 to 50735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,201 DEBUG Processing 514/562 atomic regions from SNP 153911 to 154511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,255 DEBUG Processing 169/534 atomic regions from SNP 50435 to 51035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,255 DEBUG Processing 552/599 atomic regions from SNP 165440 to 166040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,419 DEBUG Processing 515/562 atomic regions from SNP 154211 to 154811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,439 DEBUG Processing 170/534 atomic regions from SNP 50735 to 51335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,458 DEBUG Processing 553/599 atomic regions from SNP 165740 to 166340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,615 DEBUG Processing 516/562 atomic regions from SNP 154511 to 155111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,625 DEBUG Processing 171/534 atomic regions from SNP 51035 to 51635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,682 DEBUG Processing 554/599 atomic regions from SNP 166040 to 166640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,819 DEBUG Processing 172/534 atomic regions from SNP 51335 to 51935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,826 DEBUG Processing 517/562 atomic regions from SNP 154811 to 155411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,882 DEBUG Processing 555/599 atomic regions from SNP 166340 to 166940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,016 DEBUG Processing 173/534 atomic regions from SNP 51635 to 52235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,055 DEBUG Processing 518/562 atomic regions from SNP 155111 to 155711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,095 DEBUG Processing 556/599 atomic regions from SNP 166640 to 167240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,229 DEBUG Processing 174/534 atomic regions from SNP 51935 to 52535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,277 DEBUG Processing 519/562 atomic regions from SNP 155411 to 156011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,307 DEBUG Processing 557/599 atomic regions from SNP 166940 to 167540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,447 DEBUG Processing 175/534 atomic regions from SNP 52235 to 52835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,499 DEBUG Processing 520/562 atomic regions from SNP 155711 to 156311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,513 DEBUG Processing 558/599 atomic regions from SNP 167240 to 167840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,667 DEBUG Processing 176/534 atomic regions from SNP 52535 to 53135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,713 DEBUG Processing 559/599 atomic regions from SNP 167540 to 168140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,715 DEBUG Processing 521/562 atomic regions from SNP 156011 to 156611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,864 DEBUG Processing 177/534 atomic regions from SNP 52835 to 53435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,912 DEBUG Processing 560/599 atomic regions from SNP 167840 to 168440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,941 DEBUG Processing 522/562 atomic regions from SNP 156311 to 156911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,051 DEBUG Processing 178/534 atomic regions from SNP 53135 to 53735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,107 DEBUG Processing 561/599 atomic regions from SNP 168140 to 168740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,166 DEBUG Processing 523/562 atomic regions from SNP 156611 to 157211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,263 DEBUG Processing 179/534 atomic regions from SNP 53435 to 54035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,298 DEBUG Processing 562/599 atomic regions from SNP 168440 to 169040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,389 DEBUG Processing 524/562 atomic regions from SNP 156911 to 157511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,471 DEBUG Processing 180/534 atomic regions from SNP 53735 to 54335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,493 DEBUG Processing 563/599 atomic regions from SNP 168740 to 169340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,614 DEBUG Processing 525/562 atomic regions from SNP 157211 to 157811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,685 DEBUG Processing 564/599 atomic regions from SNP 169040 to 169640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,687 DEBUG Processing 181/534 atomic regions from SNP 54035 to 54635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,829 DEBUG Processing 526/562 atomic regions from SNP 157511 to 158111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,906 DEBUG Processing 565/599 atomic regions from SNP 169340 to 169940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,907 DEBUG Processing 182/534 atomic regions from SNP 54335 to 54935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,036 DEBUG Processing 527/562 atomic regions from SNP 157811 to 158411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,110 DEBUG Processing 566/599 atomic regions from SNP 169640 to 170240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,121 DEBUG Processing 183/534 atomic regions from SNP 54635 to 55235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,258 DEBUG Processing 528/562 atomic regions from SNP 158111 to 158711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,321 DEBUG Processing 567/599 atomic regions from SNP 169940 to 170540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,327 DEBUG Processing 184/534 atomic regions from SNP 54935 to 55535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,478 DEBUG Processing 529/562 atomic regions from SNP 158411 to 159011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,539 DEBUG Processing 185/534 atomic regions from SNP 55235 to 55835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,556 DEBUG Processing 568/599 atomic regions from SNP 170240 to 170840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,697 DEBUG Processing 530/562 atomic regions from SNP 158711 to 159311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,757 DEBUG Processing 186/534 atomic regions from SNP 55535 to 56135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,791 DEBUG Processing 569/599 atomic regions from SNP 170540 to 171140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,918 DEBUG Processing 531/562 atomic regions from SNP 159011 to 159611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,972 DEBUG Processing 187/534 atomic regions from SNP 55835 to 56435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,025 DEBUG Processing 570/599 atomic regions from SNP 170840 to 171440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,113 DEBUG Processing 532/562 atomic regions from SNP 159311 to 159911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,161 DEBUG Processing 188/534 atomic regions from SNP 56135 to 56735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,257 DEBUG Processing 571/599 atomic regions from SNP 171140 to 171740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,311 DEBUG Processing 533/562 atomic regions from SNP 159611 to 160211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,342 DEBUG Processing 189/534 atomic regions from SNP 56435 to 57035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,486 DEBUG Processing 572/599 atomic regions from SNP 171440 to 172040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,497 DEBUG Processing 534/562 atomic regions from SNP 159911 to 160511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,522 DEBUG Processing 190/534 atomic regions from SNP 56735 to 57335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,694 DEBUG Processing 535/562 atomic regions from SNP 160211 to 160811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,704 DEBUG Processing 191/534 atomic regions from SNP 57035 to 57635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,718 DEBUG Processing 573/599 atomic regions from SNP 171740 to 172340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,892 DEBUG Processing 192/534 atomic regions from SNP 57335 to 57935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,915 DEBUG Processing 536/562 atomic regions from SNP 160511 to 161111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,945 DEBUG Processing 574/599 atomic regions from SNP 172040 to 172640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,074 DEBUG Processing 193/534 atomic regions from SNP 57635 to 58235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,140 DEBUG Processing 537/562 atomic regions from SNP 160811 to 161411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,167 DEBUG Processing 575/599 atomic regions from SNP 172340 to 172940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,251 DEBUG Processing 194/534 atomic regions from SNP 57935 to 58535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,355 DEBUG Processing 538/562 atomic regions from SNP 161111 to 161711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,376 DEBUG Processing 576/599 atomic regions from SNP 172640 to 173240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,429 DEBUG Processing 195/534 atomic regions from SNP 58235 to 58835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,561 DEBUG Processing 539/562 atomic regions from SNP 161411 to 162011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,597 DEBUG Processing 577/599 atomic regions from SNP 172940 to 173540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,608 DEBUG Processing 196/534 atomic regions from SNP 58535 to 59135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,779 DEBUG Processing 540/562 atomic regions from SNP 161711 to 162311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,790 DEBUG Processing 197/534 atomic regions from SNP 58835 to 59435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,819 DEBUG Processing 578/599 atomic regions from SNP 173240 to 173840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,972 DEBUG Processing 198/534 atomic regions from SNP 59135 to 59735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,994 DEBUG Processing 541/562 atomic regions from SNP 162011 to 162611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,047 DEBUG Processing 579/599 atomic regions from SNP 173540 to 174140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,150 DEBUG Processing 199/534 atomic regions from SNP 59435 to 60035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,206 DEBUG Processing 542/562 atomic regions from SNP 162311 to 162911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,272 DEBUG Processing 580/599 atomic regions from SNP 173840 to 174440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,323 DEBUG Processing 200/534 atomic regions from SNP 59735 to 60335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,399 DEBUG Processing 543/562 atomic regions from SNP 162611 to 163211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,486 DEBUG Processing 581/599 atomic regions from SNP 174140 to 174740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,498 DEBUG Processing 201/534 atomic regions from SNP 60035 to 60635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,585 DEBUG Processing 544/562 atomic regions from SNP 162911 to 163511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,678 DEBUG Processing 202/534 atomic regions from SNP 60335 to 60935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,685 DEBUG Processing 582/599 atomic regions from SNP 174440 to 175040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,769 DEBUG Processing 545/562 atomic regions from SNP 163211 to 163811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,858 DEBUG Processing 203/534 atomic regions from SNP 60635 to 61235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,876 DEBUG Processing 583/599 atomic regions from SNP 174740 to 175340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,948 DEBUG Processing 546/562 atomic regions from SNP 163511 to 164111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,036 DEBUG Processing 204/534 atomic regions from SNP 60935 to 61535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,075 DEBUG Processing 584/599 atomic regions from SNP 175040 to 175640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,128 DEBUG Processing 547/562 atomic regions from SNP 163811 to 164411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,213 DEBUG Processing 205/534 atomic regions from SNP 61235 to 61835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,295 DEBUG Processing 585/599 atomic regions from SNP 175340 to 175940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,309 DEBUG Processing 548/562 atomic regions from SNP 164111 to 164711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,390 DEBUG Processing 206/534 atomic regions from SNP 61535 to 62135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,489 DEBUG Processing 549/562 atomic regions from SNP 164411 to 165011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,490 DEBUG Processing 586/599 atomic regions from SNP 175640 to 176240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,571 DEBUG Processing 207/534 atomic regions from SNP 61835 to 62435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,676 DEBUG Processing 550/562 atomic regions from SNP 164711 to 165311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,680 DEBUG Processing 587/599 atomic regions from SNP 175940 to 176540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,757 DEBUG Processing 208/534 atomic regions from SNP 62135 to 62735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,877 DEBUG Processing 588/599 atomic regions from SNP 176240 to 176840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,893 DEBUG Processing 551/562 atomic regions from SNP 165011 to 165611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,937 DEBUG Processing 209/534 atomic regions from SNP 62435 to 63035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,084 DEBUG Processing 589/599 atomic regions from SNP 176540 to 177140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,112 DEBUG Processing 552/562 atomic regions from SNP 165311 to 165911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,118 DEBUG Processing 210/534 atomic regions from SNP 62735 to 63335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,308 DEBUG Processing 211/534 atomic regions from SNP 63035 to 63635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,310 DEBUG Processing 553/562 atomic regions from SNP 165611 to 166211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,317 DEBUG Processing 590/599 atomic regions from SNP 176840 to 177440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,494 DEBUG Processing 212/534 atomic regions from SNP 63335 to 63935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,502 DEBUG Processing 554/562 atomic regions from SNP 165911 to 166511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,551 DEBUG Processing 591/599 atomic regions from SNP 177140 to 177740 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,675 DEBUG Processing 213/534 atomic regions from SNP 63635 to 64235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,705 DEBUG Processing 555/562 atomic regions from SNP 166211 to 166811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,780 DEBUG Processing 592/599 atomic regions from SNP 177440 to 178040 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,862 DEBUG Processing 214/534 atomic regions from SNP 63935 to 64535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,919 DEBUG Processing 556/562 atomic regions from SNP 166511 to 167111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,010 DEBUG Processing 593/599 atomic regions from SNP 177740 to 178340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,051 DEBUG Processing 215/534 atomic regions from SNP 64235 to 64835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,136 DEBUG Processing 557/562 atomic regions from SNP 166811 to 167411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,236 DEBUG Processing 594/599 atomic regions from SNP 178040 to 178640 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,238 DEBUG Processing 216/534 atomic regions from SNP 64535 to 65135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,333 DEBUG Processing 558/562 atomic regions from SNP 167111 to 167711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,425 DEBUG Processing 217/534 atomic regions from SNP 64835 to 65435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,438 DEBUG Processing 595/599 atomic regions from SNP 178340 to 178940 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,542 DEBUG Processing 559/562 atomic regions from SNP 167411 to 168011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,607 DEBUG Processing 218/534 atomic regions from SNP 65135 to 65735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,651 DEBUG Processing 596/599 atomic regions from SNP 178640 to 179240 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,735 DEBUG Processing 560/562 atomic regions from SNP 167711 to 168311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,787 DEBUG Processing 219/534 atomic regions from SNP 65435 to 66035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,874 DEBUG Processing 597/599 atomic regions from SNP 178940 to 179540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,922 DEBUG Processing 561/562 atomic regions from SNP 168011 to 168611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,964 DEBUG Processing 220/534 atomic regions from SNP 65735 to 66335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,096 DEBUG Processing 598/599 atomic regions from SNP 179240 to 179840 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,125 DEBUG Processing 562/562 atomic regions from SNP 168311 to 168911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,143 DEBUG Processing 221/534 atomic regions from SNP 66035 to 66635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,278 DEBUG Unique SNPs positions in subchromosome 1: 168912 2025-01-31 09:57:21,295 DEBUG Processing 599/599 atomic regions from SNP 179540 to 180140 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,327 DEBUG Processing 222/534 atomic regions from SNP 66335 to 66935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,413 DEBUG Unique SNPs positions in subchromosome 1: 180141 2025-01-31 09:57:21,507 DEBUG Processing 223/534 atomic regions from SNP 66635 to 67235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,605 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:57:21,680 DEBUG Processing 224/534 atomic regions from SNP 66935 to 67535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,862 DEBUG Processing 225/534 atomic regions from SNP 67235 to 67835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,044 DEBUG Processing 226/534 atomic regions from SNP 67535 to 68135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,218 DEBUG Processing 227/534 atomic regions from SNP 67835 to 68435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,395 DEBUG Processing 228/534 atomic regions from SNP 68135 to 68735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,572 DEBUG Processing 229/534 atomic regions from SNP 68435 to 69035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,751 DEBUG Processing 230/534 atomic regions from SNP 68735 to 69335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,930 DEBUG Processing 231/534 atomic regions from SNP 69035 to 69635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,103 DEBUG Processing 232/534 atomic regions from SNP 69335 to 69935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,275 DEBUG Processing 233/534 atomic regions from SNP 69635 to 70235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,453 DEBUG Processing 234/534 atomic regions from SNP 69935 to 70535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,631 DEBUG Processing 235/534 atomic regions from SNP 70235 to 70835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,805 DEBUG Processing 236/534 atomic regions from SNP 70535 to 71135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,982 DEBUG Processing 237/534 atomic regions from SNP 70835 to 71435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,165 DEBUG Processing 238/534 atomic regions from SNP 71135 to 71735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,340 DEBUG Processing 239/534 atomic regions from SNP 71435 to 72035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,533 DEBUG Processing 240/534 atomic regions from SNP 71735 to 72335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,740 DEBUG Processing 241/534 atomic regions from SNP 72035 to 72635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,944 DEBUG Processing 242/534 atomic regions from SNP 72335 to 72935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,124 DEBUG Processing 243/534 atomic regions from SNP 72635 to 73235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,331 DEBUG Processing 244/534 atomic regions from SNP 72935 to 73535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,535 DEBUG Processing 245/534 atomic regions from SNP 73235 to 73835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,729 DEBUG Processing 246/534 atomic regions from SNP 73535 to 74135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,936 DEBUG Processing 247/534 atomic regions from SNP 73835 to 74435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,150 DEBUG Processing 248/534 atomic regions from SNP 74135 to 74735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,358 DEBUG Processing 249/534 atomic regions from SNP 74435 to 75035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,549 DEBUG Processing 250/534 atomic regions from SNP 74735 to 75335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,723 DEBUG Processing 251/534 atomic regions from SNP 75035 to 75635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,898 DEBUG Processing 252/534 atomic regions from SNP 75335 to 75935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,101 DEBUG Processing 253/534 atomic regions from SNP 75635 to 76235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,310 DEBUG Processing 254/534 atomic regions from SNP 75935 to 76535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,513 DEBUG Processing 255/534 atomic regions from SNP 76235 to 76835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,556 DEBUG Subchromosome time: 138.56450876197778, subchromosome SNPs: 168912 2025-01-31 09:57:27,557 DEBUG Estimated BADs: [3.77, 0.94, 3.77, 0.94, 3.77, 1.88, 7.54, 0.63, 3.77, 0.63, 3.77, 0.94, 1.88, 0.47, 9.42, 1.88, 0.47, 0.94, 1.88, 7.54, 3.77] SNP counts: [3998, 5259, 1350, 2205, 7676, 4316, 3512, 1155, 6640, 9918, 18882, 18880, 2134, 8206, 449, 4815, 9007, 40514, 4802, 8432, 6762] SNP IDs counts: [3998, 5259, 1350, 2205, 7676, 4316, 3512, 1155, 6640, 9918, 18882, 18880, 2134, 8206, 449, 4815, 9007, 40514, 4802, 8432, 6762] Critical gap: 531257bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.02Mbp], 5.59Mbp, 8.47Mbp, 9.19Mbp, 10.41Mbp, 14.57Mbp, 17.11Mbp, 18.97Mbp, 19.75Mbp, 23.37Mbp, 28.90Mbp, 39.01Mbp, 49.76Mbp, 50.92Mbp, 55.82Mbp, 56.08Mbp, 58.84Mbp, 64.25Mbp, 87.38Mbp, 90.03Mbp, 94.49Mbp, 98.21Mbp] 2025-01-31 09:57:27,557 DEBUG chr16 time: 138.56503208796494 s 2025-01-31 09:57:27,655 DEBUG chr16: Fitting background model for 21 segments 2025-01-31 09:57:27,726 DEBUG Processing 256/534 atomic regions from SNP 76535 to 77135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,925 DEBUG Processing 257/534 atomic regions from SNP 76835 to 77435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,103 DEBUG Processing 258/534 atomic regions from SNP 77135 to 77735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,292 DEBUG Processing 259/534 atomic regions from SNP 77435 to 78035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,472 DEBUG Processing 260/534 atomic regions from SNP 77735 to 78335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,658 DEBUG Processing 261/534 atomic regions from SNP 78035 to 78635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,864 DEBUG Processing 262/534 atomic regions from SNP 78335 to 78935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,044 DEBUG Processing 263/534 atomic regions from SNP 78635 to 79235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,216 DEBUG Processing 264/534 atomic regions from SNP 78935 to 79535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,357 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:57:29,358 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:57:29,392 DEBUG Processing 265/534 atomic regions from SNP 79235 to 79835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,569 DEBUG Processing 266/534 atomic regions from SNP 79535 to 80135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,745 DEBUG Processing 267/534 atomic regions from SNP 79835 to 80435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,922 DEBUG Processing 268/534 atomic regions from SNP 80135 to 80735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,099 DEBUG Processing 269/534 atomic regions from SNP 80435 to 81035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,275 DEBUG Processing 270/534 atomic regions from SNP 80735 to 81335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,452 DEBUG Processing 271/534 atomic regions from SNP 81035 to 81635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,625 DEBUG Processing 272/534 atomic regions from SNP 81335 to 81935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,798 DEBUG Processing 273/534 atomic regions from SNP 81635 to 82235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,972 DEBUG chrY total SNP count: 97 2025-01-31 09:57:30,973 DEBUG chrY length: 91744698 2025-01-31 09:57:30,973 DEBUG ----------------------------------------- 2025-01-31 09:57:30,973 INFO Processing SNPs in chrY 2025-01-31 09:57:30,978 DEBUG Processing 274/534 atomic regions from SNP 81935 to 82535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,155 DEBUG Processing 275/534 atomic regions from SNP 82235 to 82835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,329 DEBUG Processing 276/534 atomic regions from SNP 82535 to 83135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,483 DEBUG Subchromosome time: 159.42452048999257, subchromosome SNPs: 180141 2025-01-31 09:57:31,484 DEBUG Estimated BADs: [1.11, 2.23, 22.25, 2.23, 0.56, 1.11, 4.45, 1.11, 2.23, 4.45, 2.23, 0.45, 1.11, 4.45, 1.11, 2.23, 1.11, 2.23, 8.90, 4.45, 2.23, 8.90, 2.23, 13.35, 6.68, 1.11] SNP counts: [3392, 6953, 84, 8036, 20768, 2900, 407, 6622, 8070, 4818, 11398, 8382, 13636, 4656, 5103, 7798, 9834, 4765, 12609, 6108, 5769, 1132, 16870, 1127, 8112, 792] SNP IDs counts: [3392, 6953, 84, 8036, 20768, 2900, 407, 6622, 8070, 4818, 11398, 8382, 13636, 4656, 5103, 7798, 9834, 4765, 12609, 6108, 5769, 1132, 16870, 1127, 8112, 792] Critical gap: 545875bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.11Mbp, 9.02Mbp, 9.10Mbp, 13.54Mbp, 25.70Mbp, 27.31Mbp, 27.54Mbp, 31.28Mbp, 35.91Mbp, 38.52Mbp, 45.07Mbp, 49.96Mbp, 57.69Mbp, 60.17Mbp, 63.06Mbp, 67.53Mbp, 73.04Mbp, 75.65Mbp, 82.38Mbp, 85.68Mbp, 88.71Mbp, 89.31Mbp, 98.50Mbp, 99.09Mbp, 103.38Mbp, 104.04Mbp] 2025-01-31 09:57:31,484 DEBUG chr15 time: 159.42498803697526 s 2025-01-31 09:57:31,503 DEBUG Processing 277/534 atomic regions from SNP 82835 to 83435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,580 DEBUG chr15: Fitting background model for 26 segments 2025-01-31 09:57:31,681 DEBUG Processing 278/534 atomic regions from SNP 83135 to 83735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,858 DEBUG Processing 279/534 atomic regions from SNP 83435 to 84035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,035 DEBUG Processing 280/534 atomic regions from SNP 83735 to 84335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,218 DEBUG Processing 281/534 atomic regions from SNP 84035 to 84635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,399 DEBUG Processing 282/534 atomic regions from SNP 84335 to 84935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,578 DEBUG Processing 283/534 atomic regions from SNP 84635 to 85235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,762 DEBUG Processing 284/534 atomic regions from SNP 84935 to 85535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,940 DEBUG Processing 285/534 atomic regions from SNP 85235 to 85835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,121 DEBUG Processing 286/534 atomic regions from SNP 85535 to 86135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,304 DEBUG Processing 287/534 atomic regions from SNP 85835 to 86435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,474 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:57:33,485 DEBUG Processing 288/534 atomic regions from SNP 86135 to 86735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,669 DEBUG Processing 289/534 atomic regions from SNP 86435 to 87035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,875 DEBUG Processing 290/534 atomic regions from SNP 86735 to 87335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,065 DEBUG Processing 291/534 atomic regions from SNP 87035 to 87635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,248 DEBUG Processing 292/534 atomic regions from SNP 87335 to 87935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,435 DEBUG Processing 293/534 atomic regions from SNP 87635 to 88235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,619 DEBUG Processing 294/534 atomic regions from SNP 87935 to 88535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,801 DEBUG Processing 295/534 atomic regions from SNP 88235 to 88835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,980 DEBUG Processing 296/534 atomic regions from SNP 88535 to 89135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,162 DEBUG Processing 297/534 atomic regions from SNP 88835 to 89435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,344 DEBUG Processing 298/534 atomic regions from SNP 89135 to 89735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,527 DEBUG Processing 299/534 atomic regions from SNP 89435 to 90035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,709 DEBUG Processing 300/534 atomic regions from SNP 89735 to 90335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,887 DEBUG Processing 301/534 atomic regions from SNP 90035 to 90635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,066 DEBUG Processing 302/534 atomic regions from SNP 90335 to 90935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,282 DEBUG Processing 303/534 atomic regions from SNP 90635 to 91235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,490 DEBUG Processing 304/534 atomic regions from SNP 90935 to 91535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,705 DEBUG Processing 305/534 atomic regions from SNP 91235 to 91835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,910 DEBUG Processing 306/534 atomic regions from SNP 91535 to 92135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,120 DEBUG Processing 307/534 atomic regions from SNP 91835 to 92435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,339 DEBUG Processing 308/534 atomic regions from SNP 92135 to 92735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,553 DEBUG Processing 309/534 atomic regions from SNP 92435 to 93035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,764 DEBUG Processing 310/534 atomic regions from SNP 92735 to 93335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,965 DEBUG Processing 311/534 atomic regions from SNP 93035 to 93635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,151 DEBUG Processing 312/534 atomic regions from SNP 93335 to 93935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,330 DEBUG Processing 313/534 atomic regions from SNP 93635 to 94235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,507 DEBUG Processing 314/534 atomic regions from SNP 93935 to 94535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,682 DEBUG Processing 315/534 atomic regions from SNP 94235 to 94835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,863 DEBUG Processing 316/534 atomic regions from SNP 94535 to 95135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,047 DEBUG Processing 317/534 atomic regions from SNP 94835 to 95435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,232 DEBUG Processing 318/534 atomic regions from SNP 95135 to 95735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,415 DEBUG Processing 319/534 atomic regions from SNP 95435 to 96035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,596 DEBUG Processing 320/534 atomic regions from SNP 95735 to 96335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,774 DEBUG Processing 321/534 atomic regions from SNP 96035 to 96635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,949 DEBUG Processing 322/534 atomic regions from SNP 96335 to 96935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,127 DEBUG Processing 323/534 atomic regions from SNP 96635 to 97235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,303 DEBUG Processing 324/534 atomic regions from SNP 96935 to 97535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,481 DEBUG Processing 325/534 atomic regions from SNP 97235 to 97835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,660 DEBUG Processing 326/534 atomic regions from SNP 97535 to 98135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,836 DEBUG Processing 327/534 atomic regions from SNP 97835 to 98435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,019 DEBUG Processing 328/534 atomic regions from SNP 98135 to 98735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,213 DEBUG Processing 329/534 atomic regions from SNP 98435 to 99035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,394 DEBUG Processing 330/534 atomic regions from SNP 98735 to 99335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,578 DEBUG Processing 331/534 atomic regions from SNP 99035 to 99635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,756 DEBUG Processing 332/534 atomic regions from SNP 99335 to 99935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,942 DEBUG Processing 333/534 atomic regions from SNP 99635 to 100235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,130 DEBUG Processing 334/534 atomic regions from SNP 99935 to 100535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,316 DEBUG Processing 335/534 atomic regions from SNP 100235 to 100835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,481 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:57:42,496 DEBUG Processing 336/534 atomic regions from SNP 100535 to 101135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,642 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:57:42,643 DEBUG chr18: Signal quantile: 0.993. signal threshold: 13. Best RMSEA: 0.020 2025-01-31 09:57:42,677 DEBUG Processing 337/534 atomic regions from SNP 100835 to 101435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,858 DEBUG Processing 338/534 atomic regions from SNP 101135 to 101735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,039 DEBUG Processing 339/534 atomic regions from SNP 101435 to 102035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,221 DEBUG Processing 340/534 atomic regions from SNP 101735 to 102335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,402 DEBUG Processing 341/534 atomic regions from SNP 102035 to 102635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,582 DEBUG Processing 342/534 atomic regions from SNP 102335 to 102935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,758 DEBUG Processing 343/534 atomic regions from SNP 102635 to 103235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,933 DEBUG Processing 344/534 atomic regions from SNP 102935 to 103535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,108 DEBUG Processing 345/534 atomic regions from SNP 103235 to 103835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,138 DEBUG chr18 total SNP count: 156496 2025-01-31 09:57:44,138 DEBUG chr18 length: 90702639 2025-01-31 09:57:44,138 DEBUG ----------------------------------------- 2025-01-31 09:57:44,138 INFO Processing SNPs in chr18 2025-01-31 09:57:44,280 DEBUG Processing 346/534 atomic regions from SNP 103535 to 104135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,291 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 156496)] 2025-01-31 09:57:44,396 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:57:44,458 DEBUG Processing 347/534 atomic regions from SNP 103835 to 104435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,631 DEBUG Processing 348/534 atomic regions from SNP 104135 to 104735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,805 DEBUG Processing 349/534 atomic regions from SNP 104435 to 105035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,979 DEBUG Processing 350/534 atomic regions from SNP 104735 to 105335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,150 DEBUG Processing 351/534 atomic regions from SNP 105035 to 105635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,335 DEBUG Processing 352/534 atomic regions from SNP 105335 to 105935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,506 DEBUG Processing 353/534 atomic regions from SNP 105635 to 106235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,682 DEBUG Processing 354/534 atomic regions from SNP 105935 to 106535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,858 DEBUG Processing 355/534 atomic regions from SNP 106235 to 106835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,032 DEBUG Processing 356/534 atomic regions from SNP 106535 to 107135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,204 DEBUG Processing 357/534 atomic regions from SNP 106835 to 107435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,375 DEBUG Processing 358/534 atomic regions from SNP 107135 to 107735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,548 DEBUG Processing 359/534 atomic regions from SNP 107435 to 108035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,722 DEBUG Processing 360/534 atomic regions from SNP 107735 to 108335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,907 DEBUG Processing 361/534 atomic regions from SNP 108035 to 108635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,098 DEBUG Processing 362/534 atomic regions from SNP 108335 to 108935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,297 DEBUG Processing 363/534 atomic regions from SNP 108635 to 109235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,483 DEBUG Processing 364/534 atomic regions from SNP 108935 to 109535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,659 DEBUG Processing 365/534 atomic regions from SNP 109235 to 109835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,833 DEBUG Processing 366/534 atomic regions from SNP 109535 to 110135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,011 DEBUG Processing 367/534 atomic regions from SNP 109835 to 110435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,186 DEBUG Processing 368/534 atomic regions from SNP 110135 to 110735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,363 DEBUG Processing 369/534 atomic regions from SNP 110435 to 111035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,540 DEBUG Processing 370/534 atomic regions from SNP 110735 to 111335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,718 DEBUG Processing 371/534 atomic regions from SNP 111035 to 111635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,909 DEBUG Processing 372/534 atomic regions from SNP 111335 to 111935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,087 DEBUG Processing 373/534 atomic regions from SNP 111635 to 112235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,260 DEBUG Processing 374/534 atomic regions from SNP 111935 to 112535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,435 DEBUG Processing 375/534 atomic regions from SNP 112235 to 112835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,611 DEBUG Processing 376/534 atomic regions from SNP 112535 to 113135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,790 DEBUG Processing 377/534 atomic regions from SNP 112835 to 113435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,969 DEBUG Processing 378/534 atomic regions from SNP 113135 to 113735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,150 DEBUG Processing 379/534 atomic regions from SNP 113435 to 114035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,329 DEBUG Processing 380/534 atomic regions from SNP 113735 to 114335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,507 DEBUG Processing 381/534 atomic regions from SNP 114035 to 114635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,684 DEBUG Processing 382/534 atomic regions from SNP 114335 to 114935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,861 DEBUG Processing 383/534 atomic regions from SNP 114635 to 115235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,036 DEBUG Processing 384/534 atomic regions from SNP 114935 to 115535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,216 DEBUG Processing 385/534 atomic regions from SNP 115235 to 115835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,262 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:57:51,264 DEBUG chr19: Signal quantile: 0.988. signal threshold: 16. Best RMSEA: 0.013 2025-01-31 09:57:51,397 DEBUG Processing 386/534 atomic regions from SNP 115535 to 116135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,575 DEBUG Processing 387/534 atomic regions from SNP 115835 to 116435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,752 DEBUG Processing 388/534 atomic regions from SNP 116135 to 116735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,931 DEBUG Processing 389/534 atomic regions from SNP 116435 to 117035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,109 DEBUG Processing 390/534 atomic regions from SNP 116735 to 117335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,286 DEBUG Processing 391/534 atomic regions from SNP 117035 to 117635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,313 DEBUG chr19 total SNP count: 104936 2025-01-31 09:57:52,313 DEBUG chr19 length: 61431566 2025-01-31 09:57:52,313 DEBUG ----------------------------------------- 2025-01-31 09:57:52,313 INFO Processing SNPs in chr19 2025-01-31 09:57:52,415 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 104936)] 2025-01-31 09:57:52,478 DEBUG Processing 392/534 atomic regions from SNP 117335 to 117935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,483 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:57:52,681 DEBUG Processing 393/534 atomic regions from SNP 117635 to 118235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,888 DEBUG Processing 394/534 atomic regions from SNP 117935 to 118535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,075 DEBUG Processing 395/534 atomic regions from SNP 118235 to 118835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,270 DEBUG Processing 396/534 atomic regions from SNP 118535 to 119135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,463 DEBUG Processing 397/534 atomic regions from SNP 118835 to 119435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,636 DEBUG Processing 398/534 atomic regions from SNP 119135 to 119735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,809 DEBUG Processing 399/534 atomic regions from SNP 119435 to 120035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,987 DEBUG Processing 400/534 atomic regions from SNP 119735 to 120335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,163 DEBUG Processing 401/534 atomic regions from SNP 120035 to 120635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,341 DEBUG Processing 402/534 atomic regions from SNP 120335 to 120935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,516 DEBUG Processing 403/534 atomic regions from SNP 120635 to 121235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,691 DEBUG Processing 404/534 atomic regions from SNP 120935 to 121535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,872 DEBUG Processing 405/534 atomic regions from SNP 121235 to 121835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,053 DEBUG Processing 406/534 atomic regions from SNP 121535 to 122135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,230 DEBUG Processing 407/534 atomic regions from SNP 121835 to 122435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,404 DEBUG Processing 408/534 atomic regions from SNP 122135 to 122735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,580 DEBUG Processing 409/534 atomic regions from SNP 122435 to 123035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,754 DEBUG Processing 410/534 atomic regions from SNP 122735 to 123335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,931 DEBUG Processing 411/534 atomic regions from SNP 123035 to 123635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,110 DEBUG Processing 412/534 atomic regions from SNP 123335 to 123935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,304 DEBUG Processing 413/534 atomic regions from SNP 123635 to 124235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,482 DEBUG Processing 414/534 atomic regions from SNP 123935 to 124535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,663 DEBUG Processing 415/534 atomic regions from SNP 124235 to 124835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,845 DEBUG Processing 416/534 atomic regions from SNP 124535 to 125135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,024 DEBUG Processing 417/534 atomic regions from SNP 124835 to 125435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,200 DEBUG Processing 418/534 atomic regions from SNP 125135 to 125735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,379 DEBUG Processing 419/534 atomic regions from SNP 125435 to 126035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,557 DEBUG Processing 420/534 atomic regions from SNP 125735 to 126335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,739 DEBUG Processing 421/534 atomic regions from SNP 126035 to 126635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,923 DEBUG Processing 422/534 atomic regions from SNP 126335 to 126935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,109 DEBUG Processing 423/534 atomic regions from SNP 126635 to 127235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,293 DEBUG Processing 424/534 atomic regions from SNP 126935 to 127535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,474 DEBUG Processing 425/534 atomic regions from SNP 127235 to 127835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,654 DEBUG Processing 426/534 atomic regions from SNP 127535 to 128135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,832 DEBUG Processing 427/534 atomic regions from SNP 127835 to 128435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,012 DEBUG Processing 428/534 atomic regions from SNP 128135 to 128735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,193 DEBUG Processing 429/534 atomic regions from SNP 128435 to 129035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,374 DEBUG Processing 430/534 atomic regions from SNP 128735 to 129335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,553 DEBUG Processing 431/534 atomic regions from SNP 129035 to 129635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,728 DEBUG Processing 432/534 atomic regions from SNP 129335 to 129935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,903 DEBUG Processing 433/534 atomic regions from SNP 129635 to 130235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,083 DEBUG Processing 434/534 atomic regions from SNP 129935 to 130535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,262 DEBUG Processing 435/534 atomic regions from SNP 130235 to 130835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,443 DEBUG Processing 436/534 atomic regions from SNP 130535 to 131135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,627 DEBUG Processing 437/534 atomic regions from SNP 130835 to 131435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,805 DEBUG Processing 438/534 atomic regions from SNP 131135 to 131735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,985 DEBUG Processing 439/534 atomic regions from SNP 131435 to 132035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,170 DEBUG Processing 440/534 atomic regions from SNP 131735 to 132335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,348 DEBUG Processing 441/534 atomic regions from SNP 132035 to 132635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,530 DEBUG Processing 442/534 atomic regions from SNP 132335 to 132935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,708 DEBUG Processing 443/534 atomic regions from SNP 132635 to 133235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,886 DEBUG Processing 444/534 atomic regions from SNP 132935 to 133535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,068 DEBUG Processing 445/534 atomic regions from SNP 133235 to 133835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,259 DEBUG Processing 446/534 atomic regions from SNP 133535 to 134135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,464 DEBUG Processing 447/534 atomic regions from SNP 133835 to 134435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,560 DEBUG Segmenting atomic regions: 2025-01-31 09:58:02,628 DEBUG Processing 1/520 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,665 DEBUG Processing 448/534 atomic regions from SNP 134135 to 134735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,812 DEBUG Processing 2/520 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,854 DEBUG Processing 449/534 atomic regions from SNP 134435 to 135035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,991 DEBUG Processing 3/520 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,051 DEBUG Processing 450/534 atomic regions from SNP 134735 to 135335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,169 DEBUG Processing 4/520 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,237 DEBUG Processing 451/534 atomic regions from SNP 135035 to 135635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,353 DEBUG Processing 5/520 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,425 DEBUG Processing 452/534 atomic regions from SNP 135335 to 135935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,543 DEBUG Processing 6/520 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,604 DEBUG Processing 453/534 atomic regions from SNP 135635 to 136235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,716 DEBUG Processing 7/520 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,785 DEBUG Processing 454/534 atomic regions from SNP 135935 to 136535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,888 DEBUG Processing 8/520 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,965 DEBUG Processing 455/534 atomic regions from SNP 136235 to 136835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,072 DEBUG Processing 9/520 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,146 DEBUG Processing 456/534 atomic regions from SNP 136535 to 137135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,262 DEBUG Processing 10/520 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,289 DEBUG Segmenting atomic regions: 2025-01-31 09:58:04,325 DEBUG Processing 457/534 atomic regions from SNP 136835 to 137435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,334 DEBUG Processing 1/348 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:04,451 DEBUG Processing 11/520 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,506 DEBUG Processing 458/534 atomic regions from SNP 137135 to 137735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,511 DEBUG Processing 2/348 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:04,648 DEBUG Processing 12/520 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,675 DEBUG Processing 3/348 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:04,689 DEBUG Processing 459/534 atomic regions from SNP 137435 to 138035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,830 DEBUG Processing 13/520 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,849 DEBUG Processing 4/348 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:04,872 DEBUG Processing 460/534 atomic regions from SNP 137735 to 138335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,023 DEBUG Processing 5/348 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:05,031 DEBUG Processing 14/520 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,056 DEBUG Processing 461/534 atomic regions from SNP 138035 to 138635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,206 DEBUG Processing 6/348 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:05,224 DEBUG Processing 15/520 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,238 DEBUG Processing 462/534 atomic regions from SNP 138335 to 138935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,390 DEBUG Processing 7/348 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:05,406 DEBUG Processing 16/520 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,422 DEBUG Processing 463/534 atomic regions from SNP 138635 to 139235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,573 DEBUG Processing 8/348 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:05,588 DEBUG Processing 17/520 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,606 DEBUG Processing 464/534 atomic regions from SNP 138935 to 139535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,746 DEBUG Processing 9/348 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:05,767 DEBUG Processing 18/520 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,788 DEBUG Processing 465/534 atomic regions from SNP 139235 to 139835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,924 DEBUG Processing 10/348 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:05,955 DEBUG Processing 19/520 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,966 DEBUG Processing 466/534 atomic regions from SNP 139535 to 140135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,094 DEBUG Processing 11/348 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:06,133 DEBUG Processing 20/520 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,144 DEBUG Processing 467/534 atomic regions from SNP 139835 to 140435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,271 DEBUG Processing 12/348 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:06,311 DEBUG Processing 21/520 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,328 DEBUG Processing 468/534 atomic regions from SNP 140135 to 140735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,457 DEBUG Processing 13/348 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:06,491 DEBUG Processing 22/520 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,522 DEBUG Processing 469/534 atomic regions from SNP 140435 to 141035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,632 DEBUG Processing 14/348 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:06,672 DEBUG Processing 23/520 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,721 DEBUG Processing 470/534 atomic regions from SNP 140735 to 141335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,813 DEBUG Processing 15/348 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:06,849 DEBUG Processing 24/520 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,910 DEBUG Processing 471/534 atomic regions from SNP 141035 to 141635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,990 DEBUG Processing 16/348 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,021 DEBUG Processing 25/520 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,114 DEBUG Processing 472/534 atomic regions from SNP 141335 to 141935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,176 DEBUG Processing 17/348 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,192 DEBUG Processing 26/520 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,297 DEBUG Processing 473/534 atomic regions from SNP 141635 to 142235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,362 DEBUG Processing 18/348 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,366 DEBUG Processing 27/520 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,476 DEBUG Processing 474/534 atomic regions from SNP 141935 to 142535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,540 DEBUG Processing 28/520 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,551 DEBUG Processing 19/348 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,651 DEBUG Processing 475/534 atomic regions from SNP 142235 to 142835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,718 DEBUG Processing 29/520 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,736 DEBUG Processing 20/348 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,828 DEBUG Processing 476/534 atomic regions from SNP 142535 to 143135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,894 DEBUG Processing 30/520 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,919 DEBUG Processing 21/348 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:08,036 DEBUG Processing 477/534 atomic regions from SNP 142835 to 143435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,069 DEBUG Processing 31/520 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,090 DEBUG Processing 22/348 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:08,227 DEBUG Processing 478/534 atomic regions from SNP 143135 to 143735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,250 DEBUG Processing 23/348 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:08,253 DEBUG Processing 32/520 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,409 DEBUG Processing 479/534 atomic regions from SNP 143435 to 144035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,431 DEBUG Processing 33/520 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,432 DEBUG Processing 24/348 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:08,589 DEBUG Processing 480/534 atomic regions from SNP 143735 to 144335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,607 DEBUG Processing 34/520 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,619 DEBUG Processing 25/348 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:08,768 DEBUG Processing 481/534 atomic regions from SNP 144035 to 144635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,784 DEBUG Processing 35/520 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,800 DEBUG Processing 26/348 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:08,947 DEBUG Processing 482/534 atomic regions from SNP 144335 to 144935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,959 DEBUG Processing 36/520 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,981 DEBUG Processing 27/348 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,126 DEBUG Processing 483/534 atomic regions from SNP 144635 to 145235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,137 DEBUG Processing 37/520 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,149 DEBUG Processing 28/348 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,302 DEBUG Processing 29/348 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,314 DEBUG Processing 38/520 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,316 DEBUG Processing 484/534 atomic regions from SNP 144935 to 145535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,454 DEBUG Processing 30/348 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,491 DEBUG Processing 39/520 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,526 DEBUG Processing 485/534 atomic regions from SNP 145235 to 145835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,606 DEBUG Processing 31/348 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,670 DEBUG Processing 40/520 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,729 DEBUG Processing 486/534 atomic regions from SNP 145535 to 146135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,756 DEBUG Processing 32/348 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,849 DEBUG Processing 41/520 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,910 DEBUG Processing 487/534 atomic regions from SNP 145835 to 146435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,918 DEBUG Processing 33/348 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,025 DEBUG Processing 42/520 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,091 DEBUG Processing 488/534 atomic regions from SNP 146135 to 146735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,098 DEBUG Processing 34/348 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,201 DEBUG Processing 43/520 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,274 DEBUG Processing 489/534 atomic regions from SNP 146435 to 147035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,285 DEBUG Processing 35/348 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,387 DEBUG Processing 44/520 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,458 DEBUG Processing 36/348 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,461 DEBUG Processing 490/534 atomic regions from SNP 146735 to 147335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,576 DEBUG Processing 45/520 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,611 DEBUG Processing 37/348 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,646 DEBUG Processing 491/534 atomic regions from SNP 147035 to 147635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,748 DEBUG Processing 46/520 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,761 DEBUG Processing 38/348 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,851 DEBUG Processing 492/534 atomic regions from SNP 147335 to 147935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,921 DEBUG Processing 47/520 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,928 DEBUG Processing 39/348 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:11,033 DEBUG Processing 493/534 atomic regions from SNP 147635 to 148235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,092 DEBUG Processing 48/520 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,115 DEBUG Processing 40/348 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:11,216 DEBUG Processing 494/534 atomic regions from SNP 147935 to 148535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,280 DEBUG Processing 49/520 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,300 DEBUG Processing 41/348 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:11,402 DEBUG Processing 495/534 atomic regions from SNP 148235 to 148835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,468 DEBUG Processing 50/520 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,480 DEBUG Processing 42/348 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:11,595 DEBUG Processing 496/534 atomic regions from SNP 148535 to 149135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,656 DEBUG Processing 43/348 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:11,656 DEBUG Processing 51/520 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,781 DEBUG Processing 497/534 atomic regions from SNP 148835 to 149435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,831 DEBUG Processing 44/348 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:11,845 DEBUG Processing 52/520 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,966 DEBUG Processing 498/534 atomic regions from SNP 149135 to 149735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,006 DEBUG Processing 45/348 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,035 DEBUG Processing 53/520 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,153 DEBUG Processing 499/534 atomic regions from SNP 149435 to 150035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,181 DEBUG Processing 46/348 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,270 DEBUG Processing 54/520 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,435 DEBUG Processing 47/348 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,454 DEBUG Processing 500/534 atomic regions from SNP 149735 to 150335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,479 DEBUG Processing 55/520 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,586 DEBUG Processing 48/348 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,641 DEBUG Processing 501/534 atomic regions from SNP 150035 to 150635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,658 DEBUG Processing 56/520 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,734 DEBUG Processing 49/348 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,820 DEBUG Processing 502/534 atomic regions from SNP 150335 to 150935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,835 DEBUG Processing 57/520 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,885 DEBUG Processing 50/348 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,001 DEBUG Processing 503/534 atomic regions from SNP 150635 to 151235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,019 DEBUG Processing 58/520 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,036 DEBUG Processing 51/348 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,179 DEBUG Processing 504/534 atomic regions from SNP 150935 to 151535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,197 DEBUG Processing 59/520 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,211 DEBUG Processing 52/348 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,357 DEBUG Processing 505/534 atomic regions from SNP 151235 to 151835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,359 DEBUG Processing 53/348 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,374 DEBUG Processing 60/520 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,514 DEBUG Processing 54/348 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,548 DEBUG Processing 506/534 atomic regions from SNP 151535 to 152135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,553 DEBUG Processing 61/520 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,702 DEBUG Processing 55/348 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,754 DEBUG Processing 507/534 atomic regions from SNP 151835 to 152435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,757 DEBUG Processing 62/520 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,883 DEBUG Processing 56/348 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,940 DEBUG Processing 63/520 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,941 DEBUG Processing 508/534 atomic regions from SNP 152135 to 152735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,060 DEBUG Processing 57/348 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,119 DEBUG Processing 64/520 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,121 DEBUG Processing 509/534 atomic regions from SNP 152435 to 153035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,215 DEBUG Processing 58/348 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,302 DEBUG Processing 65/520 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,307 DEBUG Processing 510/534 atomic regions from SNP 152735 to 153335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,369 DEBUG Processing 59/348 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,482 DEBUG Processing 66/520 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,492 DEBUG Processing 511/534 atomic regions from SNP 153035 to 153635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,531 DEBUG Processing 60/348 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,663 DEBUG Processing 67/520 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,679 DEBUG Processing 512/534 atomic regions from SNP 153335 to 153935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,698 DEBUG Processing 61/348 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,840 DEBUG Processing 68/520 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,859 DEBUG Processing 62/348 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,860 DEBUG Processing 513/534 atomic regions from SNP 153635 to 154235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,015 DEBUG Processing 63/348 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:15,018 DEBUG Processing 69/520 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,041 DEBUG Processing 514/534 atomic regions from SNP 153935 to 154535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,174 DEBUG Processing 64/348 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:15,199 DEBUG Processing 70/520 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,224 DEBUG Processing 515/534 atomic regions from SNP 154235 to 154835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,336 DEBUG Processing 65/348 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:15,378 DEBUG Processing 71/520 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,404 DEBUG Processing 516/534 atomic regions from SNP 154535 to 155135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,496 DEBUG Processing 66/348 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:15,556 DEBUG Processing 72/520 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,585 DEBUG Processing 517/534 atomic regions from SNP 154835 to 155435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,649 DEBUG Processing 67/348 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:15,734 DEBUG Processing 73/520 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,769 DEBUG Processing 518/534 atomic regions from SNP 155135 to 155735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,798 DEBUG Processing 68/348 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:15,908 DEBUG Processing 74/520 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,949 DEBUG Processing 519/534 atomic regions from SNP 155435 to 156035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,952 DEBUG Processing 69/348 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:16,082 DEBUG Processing 75/520 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,110 DEBUG Processing 70/348 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:16,131 DEBUG Processing 520/534 atomic regions from SNP 155735 to 156335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,253 DEBUG Processing 76/520 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,266 DEBUG Processing 71/348 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:16,307 DEBUG Processing 521/534 atomic regions from SNP 156035 to 156635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,419 DEBUG Processing 72/348 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:16,423 DEBUG Processing 77/520 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,484 DEBUG Processing 522/534 atomic regions from SNP 156335 to 156935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,577 DEBUG Processing 73/348 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:16,598 DEBUG Processing 78/520 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,662 DEBUG Processing 523/534 atomic regions from SNP 156635 to 157235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,736 DEBUG Processing 74/348 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:16,773 DEBUG Processing 79/520 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,841 DEBUG Processing 524/534 atomic regions from SNP 156935 to 157535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,895 DEBUG Processing 75/348 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:16,957 DEBUG Processing 80/520 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,020 DEBUG Processing 525/534 atomic regions from SNP 157235 to 157835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,051 DEBUG Processing 76/348 atomic regions from SNP 22575 to 23176 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:17,129 DEBUG Processing 81/520 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,201 DEBUG Processing 526/534 atomic regions from SNP 157535 to 158135 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,214 DEBUG Processing 77/348 atomic regions from SNP 22876 to 23477 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:17,308 DEBUG Processing 82/520 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,378 DEBUG Processing 78/348 atomic regions from SNP 23177 to 23778 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:17,387 DEBUG Processing 527/534 atomic regions from SNP 157835 to 158435 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,485 DEBUG Processing 83/520 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,547 DEBUG Processing 79/348 atomic regions from SNP 23478 to 24079 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:17,577 DEBUG Processing 528/534 atomic regions from SNP 158135 to 158735 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,667 DEBUG Processing 84/520 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,709 DEBUG Processing 80/348 atomic regions from SNP 23779 to 24380 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:17,759 DEBUG Processing 529/534 atomic regions from SNP 158435 to 159035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,844 DEBUG Processing 85/520 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,860 DEBUG Processing 81/348 atomic regions from SNP 24080 to 24681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:17,939 DEBUG Processing 530/534 atomic regions from SNP 158735 to 159335 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,019 DEBUG Processing 82/348 atomic regions from SNP 24381 to 24982 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:18,026 DEBUG Processing 86/520 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,123 DEBUG Processing 531/534 atomic regions from SNP 159035 to 159635 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,189 DEBUG Processing 83/348 atomic regions from SNP 24682 to 25283 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:18,203 DEBUG Processing 87/520 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,307 DEBUG Processing 532/534 atomic regions from SNP 159335 to 159935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,370 DEBUG Processing 84/348 atomic regions from SNP 24983 to 25584 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:18,390 DEBUG Processing 88/520 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,487 DEBUG Processing 533/534 atomic regions from SNP 159635 to 160235 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,525 DEBUG Processing 85/348 atomic regions from SNP 25284 to 25885 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:18,564 DEBUG Processing 89/520 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,665 DEBUG Processing 534/534 atomic regions from SNP 159935 to 160535 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,679 DEBUG Processing 86/348 atomic regions from SNP 25585 to 26186 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:18,739 DEBUG Processing 90/520 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,778 DEBUG Unique SNPs positions in subchromosome 1: 160536 2025-01-31 09:58:18,835 DEBUG Processing 87/348 atomic regions from SNP 25886 to 26487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:18,911 DEBUG Processing 91/520 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,994 DEBUG Processing 88/348 atomic regions from SNP 26187 to 26788 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:19,084 DEBUG Processing 92/520 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,156 DEBUG Processing 89/348 atomic regions from SNP 26488 to 27089 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:19,260 DEBUG Processing 93/520 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,314 DEBUG Processing 90/348 atomic regions from SNP 26789 to 27390 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:19,436 DEBUG Processing 94/520 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,475 DEBUG Processing 91/348 atomic regions from SNP 27090 to 27691 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:19,611 DEBUG Processing 95/520 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,642 DEBUG Processing 92/348 atomic regions from SNP 27391 to 27992 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:19,788 DEBUG Processing 96/520 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,800 DEBUG Processing 93/348 atomic regions from SNP 27692 to 28293 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:19,964 DEBUG Processing 94/348 atomic regions from SNP 27993 to 28594 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:19,967 DEBUG Processing 97/520 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,135 DEBUG Processing 95/348 atomic regions from SNP 28294 to 28895 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:20,154 DEBUG Processing 98/520 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,306 DEBUG Processing 96/348 atomic regions from SNP 28595 to 29196 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:20,346 DEBUG Processing 99/520 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,480 DEBUG Processing 97/348 atomic regions from SNP 28896 to 29497 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:20,539 DEBUG Processing 100/520 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,661 DEBUG Processing 98/348 atomic regions from SNP 29197 to 29798 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:20,725 DEBUG Processing 101/520 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,832 DEBUG Processing 99/348 atomic regions from SNP 29498 to 30099 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:20,913 DEBUG Processing 102/520 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,009 DEBUG Processing 100/348 atomic regions from SNP 29799 to 30400 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:21,106 DEBUG Processing 103/520 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,183 DEBUG Processing 101/348 atomic regions from SNP 30100 to 30701 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:21,304 DEBUG Processing 104/520 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,346 DEBUG Processing 102/348 atomic regions from SNP 30401 to 31002 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:21,505 DEBUG Processing 105/520 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,507 DEBUG Processing 103/348 atomic regions from SNP 30702 to 31303 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:21,668 DEBUG Processing 104/348 atomic regions from SNP 31003 to 31604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:21,700 DEBUG Processing 106/520 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,828 DEBUG Processing 105/348 atomic regions from SNP 31304 to 31905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:21,889 DEBUG Processing 107/520 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,981 DEBUG Processing 106/348 atomic regions from SNP 31605 to 32206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:22,068 DEBUG Processing 108/520 atomic regions from SNP 32207 to 32808 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,135 DEBUG Processing 107/348 atomic regions from SNP 31906 to 32507 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:22,243 DEBUG Processing 109/520 atomic regions from SNP 32508 to 33109 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,287 DEBUG Processing 108/348 atomic regions from SNP 32207 to 32808 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:22,414 DEBUG Processing 110/520 atomic regions from SNP 32809 to 33410 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,438 DEBUG Processing 109/348 atomic regions from SNP 32508 to 33109 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:22,589 DEBUG Processing 110/348 atomic regions from SNP 32809 to 33410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:22,590 DEBUG Processing 111/520 atomic regions from SNP 33110 to 33711 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,741 DEBUG Processing 111/348 atomic regions from SNP 33110 to 33711 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:22,763 DEBUG Processing 112/520 atomic regions from SNP 33411 to 34012 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,897 DEBUG Processing 112/348 atomic regions from SNP 33411 to 34012 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:22,947 DEBUG Processing 113/520 atomic regions from SNP 33712 to 34313 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,056 DEBUG Processing 113/348 atomic regions from SNP 33712 to 34313 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:23,125 DEBUG Processing 114/520 atomic regions from SNP 34013 to 34614 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,213 DEBUG Processing 114/348 atomic regions from SNP 34013 to 34614 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:23,298 DEBUG Processing 115/520 atomic regions from SNP 34314 to 34915 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,369 DEBUG Processing 115/348 atomic regions from SNP 34314 to 34915 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:23,475 DEBUG Processing 116/520 atomic regions from SNP 34615 to 35216 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,522 DEBUG Processing 116/348 atomic regions from SNP 34615 to 35216 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:23,655 DEBUG Processing 117/520 atomic regions from SNP 34916 to 35517 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,681 DEBUG Processing 117/348 atomic regions from SNP 34916 to 35517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:23,847 DEBUG Processing 118/520 atomic regions from SNP 35217 to 35818 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,873 DEBUG Processing 118/348 atomic regions from SNP 35217 to 35818 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:24,031 DEBUG Processing 119/520 atomic regions from SNP 35518 to 36119 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,042 DEBUG Processing 119/348 atomic regions from SNP 35518 to 36119 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:24,204 DEBUG Processing 120/348 atomic regions from SNP 35819 to 36420 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:24,214 DEBUG Processing 120/520 atomic regions from SNP 35819 to 36420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,364 DEBUG Processing 121/348 atomic regions from SNP 36120 to 36721 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:24,399 DEBUG Processing 121/520 atomic regions from SNP 36120 to 36721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,532 DEBUG Processing 122/348 atomic regions from SNP 36421 to 37022 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:24,604 DEBUG Processing 122/520 atomic regions from SNP 36421 to 37022 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,697 DEBUG Processing 123/348 atomic regions from SNP 36722 to 37323 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:24,804 DEBUG Processing 123/520 atomic regions from SNP 36722 to 37323 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,867 DEBUG Processing 124/348 atomic regions from SNP 37023 to 37624 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:25,019 DEBUG Processing 124/520 atomic regions from SNP 37023 to 37624 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,045 DEBUG Processing 125/348 atomic regions from SNP 37324 to 37925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:25,206 DEBUG Processing 125/520 atomic regions from SNP 37324 to 37925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,227 DEBUG Processing 126/348 atomic regions from SNP 37625 to 38226 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:25,404 DEBUG Processing 126/520 atomic regions from SNP 37625 to 38226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,419 DEBUG Processing 127/348 atomic regions from SNP 37926 to 38527 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:25,589 DEBUG Processing 128/348 atomic regions from SNP 38227 to 38828 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:25,597 DEBUG Processing 127/520 atomic regions from SNP 37926 to 38527 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,757 DEBUG Processing 129/348 atomic regions from SNP 38528 to 39129 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:25,779 DEBUG Processing 128/520 atomic regions from SNP 38227 to 38828 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,927 DEBUG Processing 130/348 atomic regions from SNP 38829 to 39430 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:25,959 DEBUG Processing 129/520 atomic regions from SNP 38528 to 39129 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,097 DEBUG Processing 131/348 atomic regions from SNP 39130 to 39731 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:26,162 DEBUG Processing 130/520 atomic regions from SNP 38829 to 39430 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,264 DEBUG Processing 132/348 atomic regions from SNP 39431 to 40032 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:26,342 DEBUG Processing 131/520 atomic regions from SNP 39130 to 39731 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,434 DEBUG Processing 133/348 atomic regions from SNP 39732 to 40333 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:26,525 DEBUG Processing 132/520 atomic regions from SNP 39431 to 40032 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,606 DEBUG Processing 134/348 atomic regions from SNP 40033 to 40634 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:26,704 DEBUG Processing 133/520 atomic regions from SNP 39732 to 40333 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,774 DEBUG Processing 135/348 atomic regions from SNP 40334 to 40935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:26,880 DEBUG Subchromosome time: 127.44747672905214, subchromosome SNPs: 160536 2025-01-31 09:58:26,880 DEBUG Estimated BADs: [2.01, 0.67, 4.01, 0.33, 1.00, 8.03, 4.01, 2.01, 18.07, 6.02, 20.07, 2.01, 0.67, 2.01, 6.02, 1.00, 8.03, 0.67, 2.01, 0.50, 2.01, 0.40] SNP counts: [21124, 2488, 541, 4477, 4206, 11105, 6000, 1988, 666, 2970, 335, 1834, 11699, 2506, 5888, 12786, 2706, 7626, 25787, 2693, 21305, 9806] SNP IDs counts: [21124, 2488, 541, 4477, 4206, 11105, 6000, 1988, 666, 2970, 335, 1834, 11699, 2506, 5888, 12786, 2706, 7626, 25787, 2693, 21305, 9806] Critical gap: 526546bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 15.97Mbp, 17.62Mbp, 17.91Mbp, 20.63Mbp, 23.53Mbp, 29.39Mbp, 32.55Mbp, 33.78Mbp, 34.14Mbp, 35.82Mbp, 36.00Mbp, 37.09Mbp, 44.19Mbp, 45.53Mbp, 48.65Mbp, 55.94Mbp, 57.36Mbp, 61.82Mbp, 76.02Mbp, 77.57Mbp, 89.12Mbp, 94.99Mbp] 2025-01-31 09:58:26,880 DEBUG chr17 time: 127.44802669493947 s 2025-01-31 09:58:26,885 DEBUG Processing 134/520 atomic regions from SNP 40033 to 40634 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,944 DEBUG Processing 136/348 atomic regions from SNP 40635 to 41236 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:26,974 DEBUG chr17: Fitting background model for 22 segments 2025-01-31 09:58:27,073 DEBUG Processing 135/520 atomic regions from SNP 40334 to 40935 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,123 DEBUG Processing 137/348 atomic regions from SNP 40936 to 41537 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:27,249 DEBUG Processing 136/520 atomic regions from SNP 40635 to 41236 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,284 DEBUG Processing 138/348 atomic regions from SNP 41237 to 41838 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:27,428 DEBUG Processing 137/520 atomic regions from SNP 40936 to 41537 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,448 DEBUG Processing 139/348 atomic regions from SNP 41538 to 42139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:27,613 DEBUG Processing 138/520 atomic regions from SNP 41237 to 41838 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,615 DEBUG Processing 140/348 atomic regions from SNP 41839 to 42440 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:27,782 DEBUG Processing 141/348 atomic regions from SNP 42140 to 42741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:27,799 DEBUG Processing 139/520 atomic regions from SNP 41538 to 42139 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,951 DEBUG Processing 142/348 atomic regions from SNP 42441 to 43042 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:27,989 DEBUG Processing 140/520 atomic regions from SNP 41839 to 42440 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,125 DEBUG Processing 143/348 atomic regions from SNP 42742 to 43343 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:28,174 DEBUG Processing 141/520 atomic regions from SNP 42140 to 42741 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,293 DEBUG Processing 144/348 atomic regions from SNP 43043 to 43644 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:28,363 DEBUG Processing 142/520 atomic regions from SNP 42441 to 43042 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,462 DEBUG Processing 145/348 atomic regions from SNP 43344 to 43945 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:28,544 DEBUG Processing 143/520 atomic regions from SNP 42742 to 43343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,635 DEBUG Processing 146/348 atomic regions from SNP 43645 to 44246 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:28,729 DEBUG Processing 144/520 atomic regions from SNP 43043 to 43644 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,799 DEBUG Processing 147/348 atomic regions from SNP 43946 to 44547 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:28,913 DEBUG Processing 145/520 atomic regions from SNP 43344 to 43945 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,968 DEBUG Processing 148/348 atomic regions from SNP 44247 to 44848 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:29,100 DEBUG Processing 146/520 atomic regions from SNP 43645 to 44246 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,144 DEBUG Processing 149/348 atomic regions from SNP 44548 to 45149 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:29,290 DEBUG Processing 147/520 atomic regions from SNP 43946 to 44547 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,319 DEBUG Processing 150/348 atomic regions from SNP 44849 to 45450 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:29,481 DEBUG Processing 148/520 atomic regions from SNP 44247 to 44848 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,489 DEBUG Processing 151/348 atomic regions from SNP 45150 to 45751 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:29,663 DEBUG Processing 152/348 atomic regions from SNP 45451 to 46052 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:29,668 DEBUG Processing 149/520 atomic regions from SNP 44548 to 45149 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,839 DEBUG Processing 153/348 atomic regions from SNP 45752 to 46353 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:29,859 DEBUG Processing 150/520 atomic regions from SNP 44849 to 45450 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,035 DEBUG Processing 154/348 atomic regions from SNP 46053 to 46654 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:30,049 DEBUG Processing 151/520 atomic regions from SNP 45150 to 45751 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,236 DEBUG Processing 155/348 atomic regions from SNP 46354 to 46955 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:30,240 DEBUG Processing 152/520 atomic regions from SNP 45451 to 46052 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,422 DEBUG Processing 156/348 atomic regions from SNP 46655 to 47256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:30,430 DEBUG Processing 153/520 atomic regions from SNP 45752 to 46353 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,607 DEBUG Processing 157/348 atomic regions from SNP 46956 to 47557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:30,627 DEBUG Processing 154/520 atomic regions from SNP 46053 to 46654 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,786 DEBUG Processing 158/348 atomic regions from SNP 47257 to 47858 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:30,818 DEBUG Processing 155/520 atomic regions from SNP 46354 to 46955 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,955 DEBUG Processing 159/348 atomic regions from SNP 47558 to 48159 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:31,001 DEBUG Processing 156/520 atomic regions from SNP 46655 to 47256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,124 DEBUG Processing 160/348 atomic regions from SNP 47859 to 48460 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:31,183 DEBUG Processing 157/520 atomic regions from SNP 46956 to 47557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,290 DEBUG Processing 161/348 atomic regions from SNP 48160 to 48761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:31,366 DEBUG Processing 158/520 atomic regions from SNP 47257 to 47858 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,458 DEBUG Processing 162/348 atomic regions from SNP 48461 to 49062 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:31,568 DEBUG Processing 159/520 atomic regions from SNP 47558 to 48159 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,640 DEBUG Processing 163/348 atomic regions from SNP 48762 to 49363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:31,757 DEBUG Processing 160/520 atomic regions from SNP 47859 to 48460 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,812 DEBUG Processing 164/348 atomic regions from SNP 49063 to 49664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:31,940 DEBUG Processing 161/520 atomic regions from SNP 48160 to 48761 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,976 DEBUG Processing 165/348 atomic regions from SNP 49364 to 49965 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:32,131 DEBUG Processing 162/520 atomic regions from SNP 48461 to 49062 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:32,152 DEBUG Processing 166/348 atomic regions from SNP 49665 to 50266 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:32,320 DEBUG Processing 163/520 atomic regions from SNP 48762 to 49363 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:32,322 DEBUG Processing 167/348 atomic regions from SNP 49966 to 50567 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:32,489 DEBUG Processing 168/348 atomic regions from SNP 50267 to 50868 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:32,500 DEBUG Processing 164/520 atomic regions from SNP 49063 to 49664 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:32,660 DEBUG Processing 169/348 atomic regions from SNP 50568 to 51169 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:32,680 DEBUG Processing 165/520 atomic regions from SNP 49364 to 49965 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:32,839 DEBUG Processing 170/348 atomic regions from SNP 50869 to 51470 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:32,859 DEBUG Processing 166/520 atomic regions from SNP 49665 to 50266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,004 DEBUG Processing 171/348 atomic regions from SNP 51170 to 51771 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:33,038 DEBUG Processing 167/520 atomic regions from SNP 49966 to 50567 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,166 DEBUG Processing 172/348 atomic regions from SNP 51471 to 52072 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:33,242 DEBUG Processing 168/520 atomic regions from SNP 50267 to 50868 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,341 DEBUG Processing 173/348 atomic regions from SNP 51772 to 52373 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:33,453 DEBUG Processing 169/520 atomic regions from SNP 50568 to 51169 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,527 DEBUG Processing 174/348 atomic regions from SNP 52073 to 52674 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:33,651 DEBUG Processing 170/520 atomic regions from SNP 50869 to 51470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,722 DEBUG Processing 175/348 atomic regions from SNP 52374 to 52975 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:33,855 DEBUG Processing 171/520 atomic regions from SNP 51170 to 51771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,892 DEBUG Processing 176/348 atomic regions from SNP 52675 to 53276 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:34,033 DEBUG Processing 172/520 atomic regions from SNP 51471 to 52072 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,051 DEBUG Processing 177/348 atomic regions from SNP 52976 to 53577 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:34,208 DEBUG Processing 173/520 atomic regions from SNP 51772 to 52373 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,212 DEBUG Processing 178/348 atomic regions from SNP 53277 to 53878 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:34,380 DEBUG Processing 179/348 atomic regions from SNP 53578 to 54179 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:34,388 DEBUG Processing 174/520 atomic regions from SNP 52073 to 52674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,542 DEBUG Processing 180/348 atomic regions from SNP 53879 to 54480 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:34,565 DEBUG Processing 175/520 atomic regions from SNP 52374 to 52975 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,704 DEBUG Processing 181/348 atomic regions from SNP 54180 to 54781 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:34,741 DEBUG Processing 176/520 atomic regions from SNP 52675 to 53276 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,865 DEBUG Processing 182/348 atomic regions from SNP 54481 to 55082 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:34,914 DEBUG Processing 177/520 atomic regions from SNP 52976 to 53577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,031 DEBUG Processing 183/348 atomic regions from SNP 54782 to 55383 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:35,094 DEBUG Processing 178/520 atomic regions from SNP 53277 to 53878 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,194 DEBUG Processing 184/348 atomic regions from SNP 55083 to 55684 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:35,272 DEBUG Processing 179/520 atomic regions from SNP 53578 to 54179 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,358 DEBUG Processing 185/348 atomic regions from SNP 55384 to 55985 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:35,452 DEBUG Processing 180/520 atomic regions from SNP 53879 to 54480 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,530 DEBUG Processing 186/348 atomic regions from SNP 55685 to 56286 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:35,633 DEBUG Processing 181/520 atomic regions from SNP 54180 to 54781 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,700 DEBUG Processing 187/348 atomic regions from SNP 55986 to 56587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:35,812 DEBUG Processing 182/520 atomic regions from SNP 54481 to 55082 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,862 DEBUG Processing 188/348 atomic regions from SNP 56287 to 56888 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:35,995 DEBUG Processing 183/520 atomic regions from SNP 54782 to 55383 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,028 DEBUG Processing 189/348 atomic regions from SNP 56588 to 57189 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:36,212 DEBUG Processing 184/520 atomic regions from SNP 55083 to 55684 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,215 DEBUG Processing 190/348 atomic regions from SNP 56889 to 57490 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:36,386 DEBUG Processing 191/348 atomic regions from SNP 57190 to 57791 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:36,430 DEBUG Processing 185/520 atomic regions from SNP 55384 to 55985 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,552 DEBUG Processing 192/348 atomic regions from SNP 57491 to 58092 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:36,645 DEBUG Processing 186/520 atomic regions from SNP 55685 to 56286 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,714 DEBUG Processing 193/348 atomic regions from SNP 57792 to 58393 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:36,860 DEBUG Processing 187/520 atomic regions from SNP 55986 to 56587 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,878 DEBUG Processing 194/348 atomic regions from SNP 58093 to 58694 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:37,046 DEBUG Processing 195/348 atomic regions from SNP 58394 to 58995 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:37,073 DEBUG Processing 188/520 atomic regions from SNP 56287 to 56888 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,270 DEBUG Processing 196/348 atomic regions from SNP 58695 to 59296 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:37,369 DEBUG Processing 189/520 atomic regions from SNP 56588 to 57189 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,468 DEBUG Processing 197/348 atomic regions from SNP 58996 to 59597 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:37,556 DEBUG Processing 190/520 atomic regions from SNP 56889 to 57490 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,632 DEBUG Processing 198/348 atomic regions from SNP 59297 to 59898 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:37,737 DEBUG Processing 191/520 atomic regions from SNP 57190 to 57791 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,799 DEBUG Processing 199/348 atomic regions from SNP 59598 to 60199 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:37,945 DEBUG Processing 192/520 atomic regions from SNP 57491 to 58092 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,965 DEBUG Processing 200/348 atomic regions from SNP 59899 to 60500 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:38,152 DEBUG Processing 201/348 atomic regions from SNP 60200 to 60801 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:38,157 DEBUG Processing 193/520 atomic regions from SNP 57792 to 58393 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,316 DEBUG Processing 202/348 atomic regions from SNP 60501 to 61102 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:38,367 DEBUG Processing 194/520 atomic regions from SNP 58093 to 58694 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,503 DEBUG Processing 203/348 atomic regions from SNP 60802 to 61403 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:38,579 DEBUG Processing 195/520 atomic regions from SNP 58394 to 58995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,679 DEBUG Processing 204/348 atomic regions from SNP 61103 to 61704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:38,772 DEBUG Processing 196/520 atomic regions from SNP 58695 to 59295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,860 DEBUG Processing 205/348 atomic regions from SNP 61404 to 62005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:38,986 DEBUG Processing 197/520 atomic regions from SNP 58995 to 59595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,027 DEBUG Processing 206/348 atomic regions from SNP 61705 to 62306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:39,193 DEBUG Processing 207/348 atomic regions from SNP 62006 to 62607 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:39,193 DEBUG Processing 198/520 atomic regions from SNP 59295 to 59895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,355 DEBUG Processing 208/348 atomic regions from SNP 62307 to 62908 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:39,400 DEBUG Processing 199/520 atomic regions from SNP 59595 to 60195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,517 DEBUG Processing 209/348 atomic regions from SNP 62608 to 63209 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:39,614 DEBUG Processing 200/520 atomic regions from SNP 59895 to 60495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,677 DEBUG Processing 210/348 atomic regions from SNP 62909 to 63510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:39,794 DEBUG Processing 201/520 atomic regions from SNP 60195 to 60795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,841 DEBUG Processing 211/348 atomic regions from SNP 63210 to 63811 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:39,972 DEBUG Processing 202/520 atomic regions from SNP 60495 to 61095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,009 DEBUG Processing 212/348 atomic regions from SNP 63511 to 64112 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:40,146 DEBUG Processing 203/520 atomic regions from SNP 60795 to 61395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,175 DEBUG Processing 213/348 atomic regions from SNP 63812 to 64413 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:40,323 DEBUG Processing 204/520 atomic regions from SNP 61095 to 61695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,331 DEBUG Processing 214/348 atomic regions from SNP 64113 to 64714 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:40,492 DEBUG Processing 215/348 atomic regions from SNP 64414 to 65015 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:40,502 DEBUG Processing 205/520 atomic regions from SNP 61395 to 61995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,669 DEBUG Processing 216/348 atomic regions from SNP 64715 to 65316 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:40,715 DEBUG Processing 206/520 atomic regions from SNP 61695 to 62295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,835 DEBUG Processing 217/348 atomic regions from SNP 65016 to 65617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:40,922 DEBUG Processing 207/520 atomic regions from SNP 61995 to 62595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,999 DEBUG Processing 218/348 atomic regions from SNP 65317 to 65918 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:41,114 DEBUG Processing 208/520 atomic regions from SNP 62295 to 62895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,159 DEBUG Processing 219/348 atomic regions from SNP 65618 to 66219 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:41,321 DEBUG Processing 209/520 atomic regions from SNP 62595 to 63195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,322 DEBUG Processing 220/348 atomic regions from SNP 65919 to 66520 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:41,489 DEBUG Processing 221/348 atomic regions from SNP 66220 to 66821 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:41,515 DEBUG Processing 210/520 atomic regions from SNP 62895 to 63495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,670 DEBUG Processing 222/348 atomic regions from SNP 66521 to 67122 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:41,690 DEBUG Processing 211/520 atomic regions from SNP 63195 to 63795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,855 DEBUG Processing 223/348 atomic regions from SNP 66822 to 67423 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:41,868 DEBUG Processing 212/520 atomic regions from SNP 63495 to 64095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,037 DEBUG Processing 224/348 atomic regions from SNP 67123 to 67724 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:42,048 DEBUG Processing 213/520 atomic regions from SNP 63795 to 64395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,203 DEBUG Processing 225/348 atomic regions from SNP 67424 to 68025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:42,227 DEBUG Processing 214/520 atomic regions from SNP 64095 to 64695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,367 DEBUG Processing 226/348 atomic regions from SNP 67725 to 68326 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:42,406 DEBUG Processing 215/520 atomic regions from SNP 64395 to 64995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,536 DEBUG Processing 227/348 atomic regions from SNP 68026 to 68627 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:42,603 DEBUG Processing 216/520 atomic regions from SNP 64695 to 65295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,702 DEBUG Processing 228/348 atomic regions from SNP 68327 to 68928 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:42,804 DEBUG Processing 217/520 atomic regions from SNP 64995 to 65595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,876 DEBUG Processing 229/348 atomic regions from SNP 68628 to 69229 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:43,010 DEBUG Processing 218/520 atomic regions from SNP 65295 to 65895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,139 DEBUG Processing 230/348 atomic regions from SNP 68929 to 69530 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:43,275 DEBUG Processing 219/520 atomic regions from SNP 65595 to 66195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,383 DEBUG Processing 231/348 atomic regions from SNP 69230 to 69831 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:43,537 DEBUG Processing 220/520 atomic regions from SNP 65895 to 66495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,651 DEBUG Processing 232/348 atomic regions from SNP 69531 to 70132 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:43,744 DEBUG Processing 221/520 atomic regions from SNP 66195 to 66795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,826 DEBUG Processing 233/348 atomic regions from SNP 69832 to 70433 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:43,994 DEBUG Processing 222/520 atomic regions from SNP 66495 to 67095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,027 DEBUG Processing 234/348 atomic regions from SNP 70133 to 70734 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:44,230 DEBUG Processing 223/520 atomic regions from SNP 66795 to 67395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,259 DEBUG Processing 235/348 atomic regions from SNP 70434 to 71035 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:44,432 DEBUG Processing 224/520 atomic regions from SNP 67095 to 67695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,449 DEBUG Processing 236/348 atomic regions from SNP 70735 to 71335 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:44,627 DEBUG Processing 237/348 atomic regions from SNP 71035 to 71635 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:44,634 DEBUG Processing 225/520 atomic regions from SNP 67395 to 67995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,853 DEBUG Processing 238/348 atomic regions from SNP 71335 to 71935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:44,906 DEBUG Processing 226/520 atomic regions from SNP 67695 to 68295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,047 DEBUG Processing 239/348 atomic regions from SNP 71635 to 72235 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:45,150 DEBUG Processing 227/520 atomic regions from SNP 67995 to 68595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,301 DEBUG Processing 240/348 atomic regions from SNP 71935 to 72535 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:45,360 DEBUG Processing 228/520 atomic regions from SNP 68295 to 68895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,550 DEBUG Processing 241/348 atomic regions from SNP 72235 to 72835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:45,628 DEBUG Processing 229/520 atomic regions from SNP 68595 to 69195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,787 DEBUG Processing 242/348 atomic regions from SNP 72535 to 73135 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:45,835 DEBUG Processing 230/520 atomic regions from SNP 68895 to 69495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,984 DEBUG Processing 243/348 atomic regions from SNP 72835 to 73435 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:46,082 DEBUG Processing 231/520 atomic regions from SNP 69195 to 69795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,194 DEBUG Processing 244/348 atomic regions from SNP 73135 to 73735 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:46,340 DEBUG Processing 232/520 atomic regions from SNP 69495 to 70095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,461 DEBUG Processing 245/348 atomic regions from SNP 73435 to 74035 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:46,612 DEBUG Processing 233/520 atomic regions from SNP 69795 to 70395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,712 DEBUG Processing 246/348 atomic regions from SNP 73735 to 74335 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:46,805 DEBUG Processing 234/520 atomic regions from SNP 70095 to 70695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,928 DEBUG Processing 247/348 atomic regions from SNP 74035 to 74635 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:47,034 DEBUG Processing 235/520 atomic regions from SNP 70395 to 70995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,132 DEBUG Processing 248/348 atomic regions from SNP 74335 to 74935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:47,291 DEBUG Processing 236/520 atomic regions from SNP 70695 to 71295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,369 DEBUG Processing 249/348 atomic regions from SNP 74635 to 75235 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:47,555 DEBUG Processing 237/520 atomic regions from SNP 70995 to 71595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,636 DEBUG Processing 250/348 atomic regions from SNP 74935 to 75535 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:47,819 DEBUG Processing 238/520 atomic regions from SNP 71295 to 71895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,878 DEBUG Processing 251/348 atomic regions from SNP 75235 to 75835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:48,079 DEBUG Processing 239/520 atomic regions from SNP 71595 to 72195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,113 DEBUG Processing 252/348 atomic regions from SNP 75535 to 76135 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:48,324 DEBUG Processing 240/520 atomic regions from SNP 71895 to 72495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,356 DEBUG Processing 253/348 atomic regions from SNP 75835 to 76435 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:48,574 DEBUG Processing 241/520 atomic regions from SNP 72195 to 72795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,607 DEBUG Processing 254/348 atomic regions from SNP 76135 to 76735 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:48,790 DEBUG Processing 242/520 atomic regions from SNP 72495 to 73095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,832 DEBUG Processing 255/348 atomic regions from SNP 76435 to 77035 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,029 DEBUG Processing 243/520 atomic regions from SNP 72795 to 73395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,066 DEBUG Processing 256/348 atomic regions from SNP 76735 to 77335 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,275 DEBUG Processing 244/520 atomic regions from SNP 73095 to 73695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,301 DEBUG Processing 257/348 atomic regions from SNP 77035 to 77635 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,537 DEBUG Processing 245/520 atomic regions from SNP 73395 to 73995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,561 DEBUG Processing 258/348 atomic regions from SNP 77335 to 77935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,744 DEBUG Processing 246/520 atomic regions from SNP 73695 to 74295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,765 DEBUG Processing 259/348 atomic regions from SNP 77635 to 78235 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,929 DEBUG Processing 247/520 atomic regions from SNP 73995 to 74595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,978 DEBUG Processing 260/348 atomic regions from SNP 77935 to 78535 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,154 DEBUG Processing 248/520 atomic regions from SNP 74295 to 74895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,227 DEBUG Processing 261/348 atomic regions from SNP 78235 to 78835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,392 DEBUG Processing 249/520 atomic regions from SNP 74595 to 75195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,474 DEBUG Processing 262/348 atomic regions from SNP 78535 to 79135 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,640 DEBUG Processing 250/520 atomic regions from SNP 74895 to 75495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,714 DEBUG Processing 263/348 atomic regions from SNP 78835 to 79435 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,892 DEBUG Processing 251/520 atomic regions from SNP 75195 to 75795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,933 DEBUG Processing 264/348 atomic regions from SNP 79135 to 79735 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,172 DEBUG Processing 252/520 atomic regions from SNP 75495 to 76095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,179 DEBUG Processing 265/348 atomic regions from SNP 79435 to 80035 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,410 DEBUG Processing 266/348 atomic regions from SNP 79735 to 80335 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,435 DEBUG Processing 253/520 atomic regions from SNP 75795 to 76395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,633 DEBUG Processing 267/348 atomic regions from SNP 80035 to 80635 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,692 DEBUG Processing 254/520 atomic regions from SNP 76095 to 76695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,853 DEBUG Processing 268/348 atomic regions from SNP 80335 to 80935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,952 DEBUG Processing 255/520 atomic regions from SNP 76395 to 76995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,077 DEBUG Processing 269/348 atomic regions from SNP 80635 to 81235 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,218 DEBUG Processing 256/520 atomic regions from SNP 76695 to 77295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,297 DEBUG Processing 270/348 atomic regions from SNP 80935 to 81535 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,473 DEBUG Processing 257/520 atomic regions from SNP 76995 to 77595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,504 DEBUG Processing 271/348 atomic regions from SNP 81235 to 81835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,722 DEBUG Processing 272/348 atomic regions from SNP 81535 to 82135 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,749 DEBUG Processing 258/520 atomic regions from SNP 77295 to 77895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,926 DEBUG Processing 273/348 atomic regions from SNP 81835 to 82435 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,957 DEBUG Processing 259/520 atomic regions from SNP 77595 to 78195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,163 DEBUG Processing 274/348 atomic regions from SNP 82135 to 82735 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,206 DEBUG Processing 260/520 atomic regions from SNP 77895 to 78495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,399 DEBUG Processing 275/348 atomic regions from SNP 82435 to 83035 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,475 DEBUG Processing 261/520 atomic regions from SNP 78195 to 78795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,586 DEBUG Processing 276/348 atomic regions from SNP 82735 to 83335 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,745 DEBUG Processing 262/520 atomic regions from SNP 78495 to 79095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,792 DEBUG Processing 277/348 atomic regions from SNP 83035 to 83635 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,005 DEBUG Processing 278/348 atomic regions from SNP 83335 to 83935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,027 DEBUG Processing 263/520 atomic regions from SNP 78795 to 79395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,219 DEBUG Processing 279/348 atomic regions from SNP 83635 to 84235 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,286 DEBUG Processing 264/520 atomic regions from SNP 79095 to 79695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,432 DEBUG Processing 280/348 atomic regions from SNP 83935 to 84535 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,537 DEBUG Processing 265/520 atomic regions from SNP 79395 to 79995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,647 DEBUG Processing 281/348 atomic regions from SNP 84235 to 84835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,786 DEBUG Processing 266/520 atomic regions from SNP 79695 to 80295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,856 DEBUG Processing 282/348 atomic regions from SNP 84535 to 85135 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,031 DEBUG Processing 267/520 atomic regions from SNP 79995 to 80595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,061 DEBUG Processing 283/348 atomic regions from SNP 84835 to 85435 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,272 DEBUG Processing 284/348 atomic regions from SNP 85135 to 85735 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,275 DEBUG Processing 268/520 atomic regions from SNP 80295 to 80895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,485 DEBUG Processing 285/348 atomic regions from SNP 85435 to 86035 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,520 DEBUG Processing 269/520 atomic regions from SNP 80595 to 81195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,704 DEBUG Processing 286/348 atomic regions from SNP 85735 to 86335 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,759 DEBUG Processing 270/520 atomic regions from SNP 80895 to 81495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,914 DEBUG Processing 287/348 atomic regions from SNP 86035 to 86635 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,008 DEBUG Processing 271/520 atomic regions from SNP 81195 to 81795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,130 DEBUG Processing 288/348 atomic regions from SNP 86335 to 86935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,256 DEBUG Processing 272/520 atomic regions from SNP 81495 to 82095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,361 DEBUG Processing 289/348 atomic regions from SNP 86635 to 87235 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,517 DEBUG Processing 273/520 atomic regions from SNP 81795 to 82395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,592 DEBUG Processing 290/348 atomic regions from SNP 86935 to 87535 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,766 DEBUG Processing 274/520 atomic regions from SNP 82095 to 82695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,815 DEBUG Processing 291/348 atomic regions from SNP 87235 to 87835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,016 DEBUG Processing 275/520 atomic regions from SNP 82395 to 82995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,035 DEBUG Processing 292/348 atomic regions from SNP 87535 to 88135 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,248 DEBUG Processing 293/348 atomic regions from SNP 87835 to 88435 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,261 DEBUG Processing 276/520 atomic regions from SNP 82695 to 83295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,465 DEBUG Processing 294/348 atomic regions from SNP 88135 to 88735 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,520 DEBUG Processing 277/520 atomic regions from SNP 82995 to 83595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,682 DEBUG Processing 295/348 atomic regions from SNP 88435 to 89035 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,775 DEBUG Processing 278/520 atomic regions from SNP 83295 to 83895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,908 DEBUG Processing 296/348 atomic regions from SNP 88735 to 89335 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,056 DEBUG Processing 279/520 atomic regions from SNP 83595 to 84195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,149 DEBUG Processing 297/348 atomic regions from SNP 89035 to 89635 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,294 DEBUG Processing 280/520 atomic regions from SNP 83895 to 84495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,372 DEBUG Processing 298/348 atomic regions from SNP 89335 to 89935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,531 DEBUG Processing 281/520 atomic regions from SNP 84195 to 84795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,558 DEBUG Processing 299/348 atomic regions from SNP 89635 to 90235 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,713 DEBUG Processing 282/520 atomic regions from SNP 84495 to 85095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,746 DEBUG Processing 300/348 atomic regions from SNP 89935 to 90535 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,882 DEBUG Processing 283/520 atomic regions from SNP 84795 to 85395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,908 DEBUG Processing 301/348 atomic regions from SNP 90235 to 90835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,051 DEBUG Processing 284/520 atomic regions from SNP 85095 to 85695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,064 DEBUG Processing 302/348 atomic regions from SNP 90535 to 91135 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,219 DEBUG Processing 285/520 atomic regions from SNP 85395 to 85995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,240 DEBUG Processing 303/348 atomic regions from SNP 90835 to 91435 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,386 DEBUG Processing 286/520 atomic regions from SNP 85695 to 86295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,418 DEBUG Processing 304/348 atomic regions from SNP 91135 to 91735 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,553 DEBUG Processing 287/520 atomic regions from SNP 85995 to 86595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,572 DEBUG Processing 305/348 atomic regions from SNP 91435 to 92035 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,721 DEBUG Processing 288/520 atomic regions from SNP 86295 to 86895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,724 DEBUG Processing 306/348 atomic regions from SNP 91735 to 92335 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,879 DEBUG Processing 307/348 atomic regions from SNP 92035 to 92635 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,889 DEBUG Processing 289/520 atomic regions from SNP 86595 to 87195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,033 DEBUG Processing 308/348 atomic regions from SNP 92335 to 92935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,058 DEBUG Processing 290/520 atomic regions from SNP 86895 to 87495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,183 DEBUG Processing 309/348 atomic regions from SNP 92635 to 93235 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,226 DEBUG Processing 291/520 atomic regions from SNP 87195 to 87795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,335 DEBUG Processing 310/348 atomic regions from SNP 92935 to 93535 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,394 DEBUG Processing 292/520 atomic regions from SNP 87495 to 88095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,490 DEBUG Processing 311/348 atomic regions from SNP 93235 to 93835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,561 DEBUG Processing 293/520 atomic regions from SNP 87795 to 88395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,652 DEBUG Processing 312/348 atomic regions from SNP 93535 to 94135 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,729 DEBUG Processing 294/520 atomic regions from SNP 88095 to 88695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,805 DEBUG Processing 313/348 atomic regions from SNP 93835 to 94435 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,895 DEBUG Processing 295/520 atomic regions from SNP 88395 to 88995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,957 DEBUG Processing 314/348 atomic regions from SNP 94135 to 94735 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,061 DEBUG Processing 296/520 atomic regions from SNP 88695 to 89295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,112 DEBUG Processing 315/348 atomic regions from SNP 94435 to 95035 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,228 DEBUG Processing 297/520 atomic regions from SNP 88995 to 89595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,268 DEBUG Processing 316/348 atomic regions from SNP 94735 to 95335 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,396 DEBUG Processing 298/520 atomic regions from SNP 89295 to 89895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,422 DEBUG Processing 317/348 atomic regions from SNP 95035 to 95635 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,569 DEBUG Processing 299/520 atomic regions from SNP 89595 to 90195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,574 DEBUG Processing 318/348 atomic regions from SNP 95335 to 95935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,733 DEBUG Processing 319/348 atomic regions from SNP 95635 to 96235 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,742 DEBUG Processing 300/520 atomic regions from SNP 89895 to 90495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,899 DEBUG Processing 320/348 atomic regions from SNP 95935 to 96535 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,911 DEBUG Processing 301/520 atomic regions from SNP 90195 to 90795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,061 DEBUG Processing 321/348 atomic regions from SNP 96235 to 96835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,081 DEBUG Processing 302/520 atomic regions from SNP 90495 to 91095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,221 DEBUG Processing 322/348 atomic regions from SNP 96535 to 97135 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,250 DEBUG Processing 303/520 atomic regions from SNP 90795 to 91395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,375 DEBUG Processing 323/348 atomic regions from SNP 96835 to 97435 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,420 DEBUG Processing 304/520 atomic regions from SNP 91095 to 91695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,531 DEBUG Processing 324/348 atomic regions from SNP 97135 to 97735 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,593 DEBUG Processing 305/520 atomic regions from SNP 91395 to 91995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,686 DEBUG Processing 325/348 atomic regions from SNP 97435 to 98035 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,772 DEBUG Processing 306/520 atomic regions from SNP 91695 to 92295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,839 DEBUG Processing 326/348 atomic regions from SNP 97735 to 98335 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,943 DEBUG Processing 307/520 atomic regions from SNP 91995 to 92595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,991 DEBUG Processing 327/348 atomic regions from SNP 98035 to 98635 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,111 DEBUG Processing 308/520 atomic regions from SNP 92295 to 92895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,144 DEBUG Processing 328/348 atomic regions from SNP 98335 to 98935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,281 DEBUG Processing 309/520 atomic regions from SNP 92595 to 93195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,298 DEBUG Processing 329/348 atomic regions from SNP 98635 to 99235 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,451 DEBUG Processing 330/348 atomic regions from SNP 98935 to 99535 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,453 DEBUG Processing 310/520 atomic regions from SNP 92895 to 93495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,607 DEBUG Processing 331/348 atomic regions from SNP 99235 to 99835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,625 DEBUG Processing 311/520 atomic regions from SNP 93195 to 93795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,764 DEBUG Processing 332/348 atomic regions from SNP 99535 to 100135 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,794 DEBUG Processing 312/520 atomic regions from SNP 93495 to 94095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,919 DEBUG Processing 333/348 atomic regions from SNP 99835 to 100435 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,965 DEBUG Processing 313/520 atomic regions from SNP 93795 to 94395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,072 DEBUG Processing 334/348 atomic regions from SNP 100135 to 100735 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,136 DEBUG Processing 314/520 atomic regions from SNP 94095 to 94695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,227 DEBUG Processing 335/348 atomic regions from SNP 100435 to 101035 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,304 DEBUG Processing 315/520 atomic regions from SNP 94395 to 94995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,378 DEBUG Processing 336/348 atomic regions from SNP 100735 to 101335 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,476 DEBUG Processing 316/520 atomic regions from SNP 94695 to 95295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,532 DEBUG Processing 337/348 atomic regions from SNP 101035 to 101635 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,649 DEBUG Processing 317/520 atomic regions from SNP 94995 to 95595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,689 DEBUG Processing 338/348 atomic regions from SNP 101335 to 101935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,838 DEBUG Processing 318/520 atomic regions from SNP 95295 to 95895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,843 DEBUG Processing 339/348 atomic regions from SNP 101635 to 102235 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,005 DEBUG Processing 340/348 atomic regions from SNP 101935 to 102535 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,034 DEBUG Processing 319/520 atomic regions from SNP 95595 to 96195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,157 DEBUG Processing 341/348 atomic regions from SNP 102235 to 102835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,225 DEBUG Processing 320/520 atomic regions from SNP 95895 to 96495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,310 DEBUG Processing 342/348 atomic regions from SNP 102535 to 103135 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,396 DEBUG Processing 321/520 atomic regions from SNP 96195 to 96795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,465 DEBUG Processing 343/348 atomic regions from SNP 102835 to 103435 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,567 DEBUG Processing 322/520 atomic regions from SNP 96495 to 97095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,619 DEBUG Processing 344/348 atomic regions from SNP 103135 to 103735 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,737 DEBUG Processing 323/520 atomic regions from SNP 96795 to 97395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,773 DEBUG Processing 345/348 atomic regions from SNP 103435 to 104035 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,907 DEBUG Processing 324/520 atomic regions from SNP 97095 to 97695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,937 DEBUG Processing 346/348 atomic regions from SNP 103735 to 104335 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,077 DEBUG Processing 325/520 atomic regions from SNP 97395 to 97995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,115 DEBUG Processing 347/348 atomic regions from SNP 104035 to 104635 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,246 DEBUG Processing 326/520 atomic regions from SNP 97695 to 98295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,269 DEBUG Processing 348/348 atomic regions from SNP 104335 to 104935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,379 DEBUG Unique SNPs positions in subchromosome 1: 104936 2025-01-31 09:59:06,414 DEBUG Processing 327/520 atomic regions from SNP 97995 to 98595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,583 DEBUG Processing 328/520 atomic regions from SNP 98295 to 98895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,751 DEBUG Processing 329/520 atomic regions from SNP 98595 to 99195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,920 DEBUG Processing 330/520 atomic regions from SNP 98895 to 99495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,090 DEBUG Processing 331/520 atomic regions from SNP 99195 to 99795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,261 DEBUG Processing 332/520 atomic regions from SNP 99495 to 100095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,431 DEBUG Processing 333/520 atomic regions from SNP 99795 to 100395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,600 DEBUG Processing 334/520 atomic regions from SNP 100095 to 100695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,768 DEBUG Processing 335/520 atomic regions from SNP 100395 to 100995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,935 DEBUG Processing 336/520 atomic regions from SNP 100695 to 101295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,105 DEBUG Processing 337/520 atomic regions from SNP 100995 to 101595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,274 DEBUG Processing 338/520 atomic regions from SNP 101295 to 101895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,419 DEBUG Subchromosome time: 75.93619524303358, subchromosome SNPs: 104936 2025-01-31 09:59:08,420 DEBUG Estimated BADs: [6.44, 10.73, 2.15, 10.73, 4.29, 2.15, 0.72, 2.15, 1.07, 2.15, 1.07, 2.15, 0.72, 2.15, 0.36, 2.15, 4.29, 2.15, 0.43, 2.15] SNP counts: [4344, 3660, 1827, 835, 2923, 3180, 4697, 3617, 9613, 3915, 6332, 9034, 3908, 6374, 1136, 3378, 9559, 4553, 5041, 17010] SNP IDs counts: [4344, 3660, 1827, 835, 2923, 3180, 4697, 3617, 9613, 3915, 6332, 9034, 3908, 6374, 1136, 3378, 9559, 4553, 5041, 17010] Critical gap: 412579bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 5.46Mbp, 7.50Mbp, 8.70Mbp, 9.14Mbp, 11.00Mbp, 12.83Mbp, 15.53Mbp, 17.47Mbp, 22.85Mbp, 24.93Mbp, 28.38Mbp, 33.26Mbp, 35.62Mbp, 39.05Mbp, 39.89Mbp, 41.74Mbp, 46.83Mbp, 49.28Mbp, 52.19Mbp, 61.43Mbp] 2025-01-31 09:59:08,420 DEBUG chr19 time: 75.9366256960202 s 2025-01-31 09:59:08,442 DEBUG Processing 339/520 atomic regions from SNP 101595 to 102195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,476 DEBUG chr19: Fitting background model for 20 segments 2025-01-31 09:59:08,610 DEBUG Processing 340/520 atomic regions from SNP 101895 to 102495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,808 DEBUG Processing 341/520 atomic regions from SNP 102195 to 102795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,007 DEBUG Processing 342/520 atomic regions from SNP 102495 to 103095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,205 DEBUG Processing 343/520 atomic regions from SNP 102795 to 103395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,388 DEBUG Processing 344/520 atomic regions from SNP 103095 to 103695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,573 DEBUG Processing 345/520 atomic regions from SNP 103395 to 103995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,761 DEBUG Processing 346/520 atomic regions from SNP 103695 to 104295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,960 DEBUG Processing 347/520 atomic regions from SNP 103995 to 104595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,163 DEBUG Processing 348/520 atomic regions from SNP 104295 to 104895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,363 DEBUG Processing 349/520 atomic regions from SNP 104595 to 105195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,534 DEBUG Processing 350/520 atomic regions from SNP 104895 to 105495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,701 DEBUG Processing 351/520 atomic regions from SNP 105195 to 105795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,867 DEBUG Processing 352/520 atomic regions from SNP 105495 to 106095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,044 DEBUG Processing 353/520 atomic regions from SNP 105795 to 106395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,212 DEBUG Processing 354/520 atomic regions from SNP 106095 to 106695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,380 DEBUG Processing 355/520 atomic regions from SNP 106395 to 106995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,547 DEBUG Processing 356/520 atomic regions from SNP 106695 to 107295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,714 DEBUG Processing 357/520 atomic regions from SNP 106995 to 107595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,881 DEBUG Processing 358/520 atomic regions from SNP 107295 to 107895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,050 DEBUG Processing 359/520 atomic regions from SNP 107595 to 108195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,215 DEBUG Processing 360/520 atomic regions from SNP 107895 to 108495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,406 DEBUG Processing 361/520 atomic regions from SNP 108195 to 108795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,584 DEBUG Processing 362/520 atomic regions from SNP 108495 to 109095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,752 DEBUG Processing 363/520 atomic regions from SNP 108795 to 109395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,919 DEBUG Processing 364/520 atomic regions from SNP 109095 to 109695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,090 DEBUG Processing 365/520 atomic regions from SNP 109395 to 109995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,284 DEBUG Processing 366/520 atomic regions from SNP 109695 to 110295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,461 DEBUG Processing 367/520 atomic regions from SNP 109995 to 110595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,628 DEBUG Processing 368/520 atomic regions from SNP 110295 to 110895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,793 DEBUG Processing 369/520 atomic regions from SNP 110595 to 111195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,958 DEBUG Processing 370/520 atomic regions from SNP 110895 to 111495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,128 DEBUG Processing 371/520 atomic regions from SNP 111195 to 111795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,294 DEBUG Processing 372/520 atomic regions from SNP 111495 to 112095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,458 DEBUG Processing 373/520 atomic regions from SNP 111795 to 112395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,622 DEBUG Processing 374/520 atomic regions from SNP 112095 to 112695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,787 DEBUG Processing 375/520 atomic regions from SNP 112395 to 112995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,951 DEBUG Processing 376/520 atomic regions from SNP 112695 to 113295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,114 DEBUG Processing 377/520 atomic regions from SNP 112995 to 113595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,278 DEBUG Processing 378/520 atomic regions from SNP 113295 to 113895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,443 DEBUG Processing 379/520 atomic regions from SNP 113595 to 114195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,608 DEBUG Processing 380/520 atomic regions from SNP 113895 to 114495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,778 DEBUG Processing 381/520 atomic regions from SNP 114195 to 114795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,945 DEBUG Processing 382/520 atomic regions from SNP 114495 to 115095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,137 DEBUG Processing 383/520 atomic regions from SNP 114795 to 115395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,337 DEBUG Processing 384/520 atomic regions from SNP 115095 to 115695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,535 DEBUG Processing 385/520 atomic regions from SNP 115395 to 115995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,737 DEBUG Processing 386/520 atomic regions from SNP 115695 to 116295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,926 DEBUG Processing 387/520 atomic regions from SNP 115995 to 116595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,095 DEBUG Processing 388/520 atomic regions from SNP 116295 to 116895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,262 DEBUG Processing 389/520 atomic regions from SNP 116595 to 117195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,430 DEBUG Processing 390/520 atomic regions from SNP 116895 to 117495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,598 DEBUG Processing 391/520 atomic regions from SNP 117195 to 117795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,766 DEBUG Processing 392/520 atomic regions from SNP 117495 to 118095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,934 DEBUG Processing 393/520 atomic regions from SNP 117795 to 118395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,102 DEBUG Processing 394/520 atomic regions from SNP 118095 to 118695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,270 DEBUG Processing 395/520 atomic regions from SNP 118395 to 118995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,442 DEBUG Processing 396/520 atomic regions from SNP 118695 to 119295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,613 DEBUG Processing 397/520 atomic regions from SNP 118995 to 119595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,791 DEBUG Processing 398/520 atomic regions from SNP 119295 to 119895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,966 DEBUG Processing 399/520 atomic regions from SNP 119595 to 120195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,135 DEBUG Processing 400/520 atomic regions from SNP 119895 to 120495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,301 DEBUG Processing 401/520 atomic regions from SNP 120195 to 120795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,469 DEBUG Processing 402/520 atomic regions from SNP 120495 to 121095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,654 DEBUG Processing 403/520 atomic regions from SNP 120795 to 121395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,854 DEBUG Processing 404/520 atomic regions from SNP 121095 to 121695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,024 DEBUG Processing 405/520 atomic regions from SNP 121395 to 121995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,194 DEBUG Processing 406/520 atomic regions from SNP 121695 to 122295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,366 DEBUG Processing 407/520 atomic regions from SNP 121995 to 122595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,538 DEBUG Processing 408/520 atomic regions from SNP 122295 to 122895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,720 DEBUG Processing 409/520 atomic regions from SNP 122595 to 123195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,890 DEBUG Processing 410/520 atomic regions from SNP 122895 to 123495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,061 DEBUG Processing 411/520 atomic regions from SNP 123195 to 123795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,230 DEBUG Processing 412/520 atomic regions from SNP 123495 to 124095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,400 DEBUG Processing 413/520 atomic regions from SNP 123795 to 124395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,569 DEBUG Processing 414/520 atomic regions from SNP 124095 to 124695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,740 DEBUG Processing 415/520 atomic regions from SNP 124395 to 124995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,906 DEBUG Processing 416/520 atomic regions from SNP 124695 to 125295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,073 DEBUG Processing 417/520 atomic regions from SNP 124995 to 125595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,241 DEBUG Processing 418/520 atomic regions from SNP 125295 to 125895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,411 DEBUG Processing 419/520 atomic regions from SNP 125595 to 126195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,576 DEBUG Processing 420/520 atomic regions from SNP 125895 to 126495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,745 DEBUG Processing 421/520 atomic regions from SNP 126195 to 126795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,927 DEBUG Processing 422/520 atomic regions from SNP 126495 to 127095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,111 DEBUG Processing 423/520 atomic regions from SNP 126795 to 127395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,278 DEBUG Processing 424/520 atomic regions from SNP 127095 to 127695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,450 DEBUG Processing 425/520 atomic regions from SNP 127395 to 127995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,626 DEBUG Processing 426/520 atomic regions from SNP 127695 to 128295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,793 DEBUG Processing 427/520 atomic regions from SNP 127995 to 128595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,975 DEBUG Processing 428/520 atomic regions from SNP 128295 to 128895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,168 DEBUG Processing 429/520 atomic regions from SNP 128595 to 129195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,364 DEBUG Processing 430/520 atomic regions from SNP 128895 to 129495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,539 DEBUG Processing 431/520 atomic regions from SNP 129195 to 129795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,713 DEBUG Processing 432/520 atomic regions from SNP 129495 to 130095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,888 DEBUG Processing 433/520 atomic regions from SNP 129795 to 130395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,060 DEBUG Processing 434/520 atomic regions from SNP 130095 to 130695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,232 DEBUG Processing 435/520 atomic regions from SNP 130395 to 130995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,405 DEBUG Processing 436/520 atomic regions from SNP 130695 to 131295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,579 DEBUG Processing 437/520 atomic regions from SNP 130995 to 131595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,750 DEBUG Processing 438/520 atomic regions from SNP 131295 to 131895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,918 DEBUG Processing 439/520 atomic regions from SNP 131595 to 132195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,087 DEBUG Processing 440/520 atomic regions from SNP 131895 to 132495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,259 DEBUG Processing 441/520 atomic regions from SNP 132195 to 132795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,443 DEBUG Processing 442/520 atomic regions from SNP 132495 to 133095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,646 DEBUG Processing 443/520 atomic regions from SNP 132795 to 133395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,820 DEBUG Processing 444/520 atomic regions from SNP 133095 to 133695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,989 DEBUG Processing 445/520 atomic regions from SNP 133395 to 133995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,163 DEBUG Processing 446/520 atomic regions from SNP 133695 to 134295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,371 DEBUG Processing 447/520 atomic regions from SNP 133995 to 134595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,564 DEBUG Processing 448/520 atomic regions from SNP 134295 to 134895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,761 DEBUG Processing 449/520 atomic regions from SNP 134595 to 135195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,947 DEBUG Processing 450/520 atomic regions from SNP 134895 to 135495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,123 DEBUG Processing 451/520 atomic regions from SNP 135195 to 135795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,292 DEBUG Processing 452/520 atomic regions from SNP 135495 to 136095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,459 DEBUG Processing 453/520 atomic regions from SNP 135795 to 136395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,628 DEBUG Processing 454/520 atomic regions from SNP 136095 to 136695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,798 DEBUG Processing 455/520 atomic regions from SNP 136395 to 136995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,971 DEBUG Processing 456/520 atomic regions from SNP 136695 to 137295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,139 DEBUG Processing 457/520 atomic regions from SNP 136995 to 137595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,308 DEBUG Processing 458/520 atomic regions from SNP 137295 to 137895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,476 DEBUG Processing 459/520 atomic regions from SNP 137595 to 138195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,647 DEBUG Processing 460/520 atomic regions from SNP 137895 to 138495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,838 DEBUG Processing 461/520 atomic regions from SNP 138195 to 138795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,054 DEBUG Processing 462/520 atomic regions from SNP 138495 to 139095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,240 DEBUG Processing 463/520 atomic regions from SNP 138795 to 139395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,421 DEBUG Processing 464/520 atomic regions from SNP 139095 to 139695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,595 DEBUG Processing 465/520 atomic regions from SNP 139395 to 139995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,766 DEBUG Processing 466/520 atomic regions from SNP 139695 to 140295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,935 DEBUG Processing 467/520 atomic regions from SNP 139995 to 140595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,103 DEBUG Processing 468/520 atomic regions from SNP 140295 to 140895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,271 DEBUG Processing 469/520 atomic regions from SNP 140595 to 141195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,441 DEBUG Processing 470/520 atomic regions from SNP 140895 to 141495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,611 DEBUG Processing 471/520 atomic regions from SNP 141195 to 141795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,783 DEBUG Processing 472/520 atomic regions from SNP 141495 to 142095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,951 DEBUG Processing 473/520 atomic regions from SNP 141795 to 142395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,120 DEBUG Processing 474/520 atomic regions from SNP 142095 to 142695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,289 DEBUG Processing 475/520 atomic regions from SNP 142395 to 142995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,480 DEBUG Processing 476/520 atomic regions from SNP 142695 to 143295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,678 DEBUG Processing 477/520 atomic regions from SNP 142995 to 143595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,850 DEBUG Processing 478/520 atomic regions from SNP 143295 to 143895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,019 DEBUG Processing 479/520 atomic regions from SNP 143595 to 144195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,188 DEBUG Processing 480/520 atomic regions from SNP 143895 to 144495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,355 DEBUG Processing 481/520 atomic regions from SNP 144195 to 144795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,525 DEBUG Processing 482/520 atomic regions from SNP 144495 to 145095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,694 DEBUG Processing 483/520 atomic regions from SNP 144795 to 145395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,863 DEBUG Processing 484/520 atomic regions from SNP 145095 to 145695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,036 DEBUG Processing 485/520 atomic regions from SNP 145395 to 145995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,203 DEBUG Processing 486/520 atomic regions from SNP 145695 to 146295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,374 DEBUG Processing 487/520 atomic regions from SNP 145995 to 146595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,546 DEBUG Processing 488/520 atomic regions from SNP 146295 to 146895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,726 DEBUG Processing 489/520 atomic regions from SNP 146595 to 147195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,910 DEBUG Processing 490/520 atomic regions from SNP 146895 to 147495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,095 DEBUG Processing 491/520 atomic regions from SNP 147195 to 147795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,263 DEBUG Processing 492/520 atomic regions from SNP 147495 to 148095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,428 DEBUG Processing 493/520 atomic regions from SNP 147795 to 148395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,594 DEBUG Processing 494/520 atomic regions from SNP 148095 to 148695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,761 DEBUG Processing 495/520 atomic regions from SNP 148395 to 148995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,929 DEBUG Processing 496/520 atomic regions from SNP 148695 to 149295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,101 DEBUG Processing 497/520 atomic regions from SNP 148995 to 149595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,268 DEBUG Processing 498/520 atomic regions from SNP 149295 to 149895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,437 DEBUG Processing 499/520 atomic regions from SNP 149595 to 150195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,606 DEBUG Processing 500/520 atomic regions from SNP 149895 to 150495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,774 DEBUG Processing 501/520 atomic regions from SNP 150195 to 150795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,941 DEBUG Processing 502/520 atomic regions from SNP 150495 to 151095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,110 DEBUG Processing 503/520 atomic regions from SNP 150795 to 151395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,277 DEBUG Processing 504/520 atomic regions from SNP 151095 to 151695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,445 DEBUG Processing 505/520 atomic regions from SNP 151395 to 151995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,614 DEBUG Processing 506/520 atomic regions from SNP 151695 to 152295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,781 DEBUG Processing 507/520 atomic regions from SNP 151995 to 152595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,950 DEBUG Processing 508/520 atomic regions from SNP 152295 to 152895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,132 DEBUG Processing 509/520 atomic regions from SNP 152595 to 153195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,300 DEBUG Processing 510/520 atomic regions from SNP 152895 to 153495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,468 DEBUG Processing 511/520 atomic regions from SNP 153195 to 153795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,636 DEBUG Processing 512/520 atomic regions from SNP 153495 to 154095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,807 DEBUG Processing 513/520 atomic regions from SNP 153795 to 154395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,977 DEBUG Processing 514/520 atomic regions from SNP 154095 to 154695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,146 DEBUG Processing 515/520 atomic regions from SNP 154395 to 154995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,312 DEBUG Processing 516/520 atomic regions from SNP 154695 to 155295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,481 DEBUG Processing 517/520 atomic regions from SNP 154995 to 155595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,648 DEBUG Processing 518/520 atomic regions from SNP 155295 to 155895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,817 DEBUG Processing 519/520 atomic regions from SNP 155595 to 156195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,986 DEBUG Processing 520/520 atomic regions from SNP 155895 to 156495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,092 DEBUG Unique SNPs positions in subchromosome 1: 156496 2025-01-31 09:59:41,092 DEBUG Subchromosome time: 116.69532679603435, subchromosome SNPs: 156496 2025-01-31 09:59:41,092 DEBUG Estimated BADs: [1.63, 0.41, 1.63, 6.50, 1.63, 6.50, 1.63, 4.88, 1.63, 6.50, 1.63, 0.81, 3.25, 1.63, 0.81] SNP counts: [25065, 3050, 26882, 4960, 1656, 1083, 39536, 2193, 10343, 1027, 6609, 4108, 7939, 12523, 9522] SNP IDs counts: [25065, 3050, 26882, 4960, 1656, 1083, 39536, 2193, 10343, 1027, 6609, 4108, 7939, 12523, 9522] Critical gap: 508408bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 17.25Mbp, 19.09Mbp, 34.22Mbp, 36.80Mbp, 37.80Mbp, 38.36Mbp, 60.48Mbp, 61.62Mbp, 67.19Mbp, 67.73Mbp, 71.37Mbp, 73.70Mbp, 78.03Mbp, 84.85Mbp, 90.70Mbp] 2025-01-31 09:59:41,092 DEBUG chr18 time: 116.69590191007592 s 2025-01-31 09:59:41,173 DEBUG chr18: Fitting background model for 15 segments 2025-01-31 10:00:00,328 DEBUG Results of fit_background_model emitted. 2025-01-31 10:00:00,436 INFO Signal to noise fit: SPOT=0.33±0.16 2025-01-31 10:00:00,442 INFO Found 1 outlier SPOT score segments at iteration 1. Refitting with approximated signal/noise constraint. 2025-01-31 10:00:00,487 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:00:00,487 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 10:00:04,724 DEBUG chr13: Fitting background model for 1 segments 2025-01-31 10:00:07,159 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 10:00:07,224 INFO Signal to noise fit: SPOT=0.33±0.16 2025-01-31 10:00:07,228 INFO Final SPOT score: 0.33±0.16. Refitted 1 segments. 2025-01-31 10:00:07,269 INFO Estimating per-bp parameters of background model 2025-01-31 10:00:07,275 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:00:07,275 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 10:00:12,661 DEBUG chr5:3002500-5899251: Successfully fit background model for 2,542,279 bp. Use segment r for 0 bp 2025-01-31 10:00:12,950 DEBUG chr3:3000000-8593751: Successfully fit background model for 4,821,222 bp. Use segment r for 0 bp 2025-01-31 10:00:13,117 DEBUG chr3:8593751-10271251: Successfully fit background model for 1,549,023 bp. Use segment r for 0 bp 2025-01-31 10:00:13,238 DEBUG chr4:3050000-8516751: Successfully fit background model for 4,600,916 bp. Use segment r for 635 bp 2025-01-31 10:00:13,512 DEBUG chr2:3051000-7369251: Successfully fit background model for 4,081,880 bp. Use segment r for 0 bp 2025-01-31 10:00:13,672 DEBUG chr2:7369251-8993751: Successfully fit background model for 1,424,531 bp. Use segment r for 0 bp 2025-01-31 10:00:14,003 DEBUG chr4:8516751-16254251: Successfully fit background model for 6,989,289 bp. Use segment r for 0 bp 2025-01-31 10:00:14,074 DEBUG chrX:3055000-7564751: Successfully fit background model for 2,015,412 bp. Use segment r for 3,300 bp 2025-01-31 10:00:14,106 DEBUG chr3:10271251-19147251: Successfully fit background model for 7,464,403 bp. Use segment r for 0 bp 2025-01-31 10:00:14,177 DEBUG chr3:19147251-19697751: Successfully fit background model for 514,932 bp. Use segment r for 0 bp 2025-01-31 10:00:14,266 DEBUG chr4:16254251-19037751: Successfully fit background model for 2,404,550 bp. Use segment r for 0 bp 2025-01-31 10:00:14,281 DEBUG chrX:7564751-9743251: Successfully fit background model for 1,735,357 bp. Use segment r for 0 bp 2025-01-31 10:00:14,323 DEBUG chr2:8993751-15456751: Successfully fit background model for 5,903,920 bp. Use segment r for 0 bp 2025-01-31 10:00:14,473 DEBUG chrX:9743251-11796751: Successfully fit background model for 1,893,989 bp. Use segment r for 0 bp 2025-01-31 10:00:14,509 DEBUG chr4:19037751-21708251: Successfully fit background model for 2,277,219 bp. Use segment r for 0 bp 2025-01-31 10:00:14,566 DEBUG chr2:15456751-18019251: Successfully fit background model for 2,286,264 bp. Use segment r for 0 bp 2025-01-31 10:00:14,606 DEBUG chr4:21708251-22603251: Successfully fit background model for 833,944 bp. Use segment r for 0 bp 2025-01-31 10:00:14,663 DEBUG chr2:18019251-18903751: Successfully fit background model for 832,387 bp. Use segment r for 0 bp 2025-01-31 10:00:14,711 DEBUG chrX:11796751-14076751: Successfully fit background model for 2,141,320 bp. Use segment r for 0 bp 2025-01-31 10:00:14,721 DEBUG chr1:3000500-9541251: Successfully fit background model for 5,697,560 bp. Use segment r for 0 bp 2025-01-31 10:00:14,774 DEBUG chr1:9541251-9917251: Successfully fit background model for 361,908 bp. Use segment r for 0 bp 2025-01-31 10:00:14,918 DEBUG chrX:14076751-16092501: Successfully fit background model for 1,727,876 bp. Use segment r for 0 bp 2025-01-31 10:00:15,179 DEBUG chr3:19697751-28687751: Successfully fit background model for 7,986,439 bp. Use segment r for 0 bp 2025-01-31 10:00:15,206 DEBUG chr2:18903751-24914251: Successfully fit background model for 5,312,681 bp. Use segment r for 0 bp 2025-01-31 10:00:15,210 DEBUG chr5:5899251-20863751: Successfully fit background model for 11,927,030 bp. Use segment r for 440 bp 2025-01-31 10:00:15,224 DEBUG chr3:28687751-28852251: Successfully fit background model for 159,458 bp. Use segment r for 0 bp 2025-01-31 10:00:15,423 DEBUG chr3:28852251-30587251: Successfully fit background model for 1,565,377 bp. Use segment r for 0 bp 2025-01-31 10:00:15,428 DEBUG chr1:9917251-16617751: Successfully fit background model for 6,042,810 bp. Use segment r for 0 bp 2025-01-31 10:00:15,470 DEBUG chr3:30587251-31004751: Successfully fit background model for 407,214 bp. Use segment r for 0 bp 2025-01-31 10:00:15,503 DEBUG chrX:16092501-21506751: Successfully fit background model for 4,660,347 bp. Use segment r for 0 bp 2025-01-31 10:00:15,543 DEBUG chr5:20863751-24319751: Successfully fit background model for 3,184,355 bp. Use segment r for 0 bp 2025-01-31 10:00:15,661 DEBUG chr5:24319751-25543251: Successfully fit background model for 1,173,350 bp. Use segment r for 0 bp 2025-01-31 10:00:15,760 DEBUG chr4:22603251-32697751: Successfully fit background model for 9,072,418 bp. Use segment r for 0 bp 2025-01-31 10:00:15,842 DEBUG chr4:32697751-33309751: Successfully fit background model for 589,816 bp. Use segment r for 0 bp 2025-01-31 10:00:15,922 DEBUG chr2:24914251-32820751: Successfully fit background model for 7,666,599 bp. Use segment r for 0 bp 2025-01-31 10:00:15,993 DEBUG chr4:33309751-34866751: Successfully fit background model for 1,448,371 bp. Use segment r for 0 bp 2025-01-31 10:00:16,157 DEBUG chr5:25543251-30513751: Successfully fit background model for 4,418,229 bp. Use segment r for 0 bp 2025-01-31 10:00:16,217 DEBUG chr3:31004751-38109251: Successfully fit background model for 6,543,591 bp. Use segment r for 0 bp 2025-01-31 10:00:16,234 DEBUG chr5:30513751-31243251: Successfully fit background model for 708,143 bp. Use segment r for 0 bp 2025-01-31 10:00:16,243 DEBUG chr2:32820751-36265751: Successfully fit background model for 3,364,061 bp. Use segment r for 0 bp 2025-01-31 10:00:16,289 DEBUG chrX:21506751-26917001: Successfully fit background model for 2,804,801 bp. Use segment r for 191 bp 2025-01-31 10:00:16,326 DEBUG chr2:36265751-37021751: Successfully fit background model for 623,756 bp. Use segment r for 0 bp 2025-01-31 10:00:16,513 DEBUG chr4:34866751-40134751: Successfully fit background model for 4,679,998 bp. Use segment r for 0 bp 2025-01-31 10:00:16,546 DEBUG chr2:37021751-39375251: Successfully fit background model for 2,201,803 bp. Use segment r for 0 bp 2025-01-31 10:00:16,755 DEBUG chr4:40134751-41857501: Successfully fit background model for 1,562,069 bp. Use segment r for 286 bp 2025-01-31 10:00:16,795 DEBUG chr4:42735000-43059751: Successfully fit background model for 261,386 bp. Use segment r for 0 bp 2025-01-31 10:00:16,827 DEBUG chr3:38109251-44279251: Successfully fit background model for 5,474,360 bp. Use segment r for 0 bp 2025-01-31 10:00:16,961 DEBUG chr1:16617751-30776751: Successfully fit background model for 12,641,143 bp. Use segment r for 0 bp 2025-01-31 10:00:16,966 DEBUG chr2:39375251-43851751: Successfully fit background model for 4,069,260 bp. Use segment r for 0 bp 2025-01-31 10:00:17,007 DEBUG chr1:30776751-30981751: Successfully fit background model for 184,204 bp. Use segment r for 0 bp 2025-01-31 10:00:17,055 DEBUG chr5:31243251-39115251: Successfully fit background model for 7,485,532 bp. Use segment r for 0 bp 2025-01-31 10:00:17,158 DEBUG chr2:43851751-45814751: Successfully fit background model for 1,877,134 bp. Use segment r for 0 bp 2025-01-31 10:00:17,256 DEBUG chr5:39115251-41180751: Successfully fit background model for 1,881,035 bp. Use segment r for 0 bp 2025-01-31 10:00:17,291 DEBUG chr1:30981751-33578751: Successfully fit background model for 2,280,011 bp. Use segment r for 0 bp 2025-01-31 10:00:17,335 DEBUG chr4:43059751-48694251: Successfully fit background model for 5,419,498 bp. Use segment r for 0 bp 2025-01-31 10:00:17,360 DEBUG chr2:45814751-47969751: Successfully fit background model for 1,928,611 bp. Use segment r for 0 bp 2025-01-31 10:00:17,455 DEBUG chr3:44279251-48913751: Successfully fit background model for 4,152,914 bp. Use segment r for 375 bp 2025-01-31 10:00:17,470 DEBUG chrX:31132500-38870251: Successfully fit background model for 2,795,751 bp. Use segment r for 1,695 bp 2025-01-31 10:00:17,674 DEBUG chr3:48913751-51166751: Successfully fit background model for 1,981,427 bp. Use segment r for 0 bp 2025-01-31 10:00:17,677 DEBUG chr5:41180751-45878251: Successfully fit background model for 4,212,750 bp. Use segment r for 0 bp 2025-01-31 10:00:17,708 DEBUG chr4:48694251-52773251: Successfully fit background model for 3,597,692 bp. Use segment r for 0 bp 2025-01-31 10:00:17,725 DEBUG chr3:51166751-51604751: Successfully fit background model for 425,213 bp. Use segment r for 0 bp 2025-01-31 10:00:17,851 DEBUG chr2:47969751-53203251: Successfully fit background model for 4,961,084 bp. Use segment r for 0 bp 2025-01-31 10:00:17,908 DEBUG chr1:33578751-39513251: Successfully fit background model for 5,669,631 bp. Use segment r for 0 bp 2025-01-31 10:00:18,147 DEBUG chr2:53203251-56382251: Successfully fit background model for 2,711,115 bp. Use segment r for 0 bp 2025-01-31 10:00:18,174 DEBUG chr5:45878251-51048001: Successfully fit background model for 4,725,248 bp. Use segment r for 0 bp 2025-01-31 10:00:18,324 DEBUG chr1:39513251-44097751: Successfully fit background model for 4,383,354 bp. Use segment r for 0 bp 2025-01-31 10:00:18,343 DEBUG chr1:44097751-44149251: Successfully fit background model for 50,177 bp. Use segment r for 0 bp 2025-01-31 10:00:18,375 DEBUG chrX:38870251-48207251: Successfully fit background model for 8,078,281 bp. Use segment r for 0 bp 2025-01-31 10:00:18,466 DEBUG chr5:51048001-54292751: Successfully fit background model for 3,118,270 bp. Use segment r for 0 bp 2025-01-31 10:00:18,609 DEBUG chrX:48207251-50549251: Successfully fit background model for 1,996,106 bp. Use segment r for 0 bp 2025-01-31 10:00:18,632 DEBUG chrX:50549251-50636751: Successfully fit background model for 79,897 bp. Use segment r for 0 bp 2025-01-31 10:00:19,188 DEBUG chr1:44149251-52095751: Successfully fit background model for 6,913,440 bp. Use segment r for 0 bp 2025-01-31 10:00:19,220 DEBUG chr1:52095751-52246251: Successfully fit background model for 146,099 bp. Use segment r for 0 bp 2025-01-31 10:00:19,384 DEBUG chr5:54292751-63389751: Successfully fit background model for 8,049,379 bp. Use segment r for 0 bp 2025-01-31 10:00:19,617 DEBUG chr2:56382251-69778251: Successfully fit background model for 12,429,318 bp. Use segment r for 0 bp 2025-01-31 10:00:19,618 DEBUG chr4:52773251-64066001: Successfully fit background model for 9,013,746 bp. Use segment r for 22 bp 2025-01-31 10:00:19,818 DEBUG chr1:52246251-58261751: Successfully fit background model for 5,543,285 bp. Use segment r for 0 bp 2025-01-31 10:00:19,857 DEBUG chr5:63389751-68469751: Successfully fit background model for 4,795,358 bp. Use segment r for 0 bp 2025-01-31 10:00:19,867 DEBUG chr3:51604751-71022251: Successfully fit background model for 17,586,991 bp. Use segment r for 0 bp 2025-01-31 10:00:19,958 DEBUG chr2:69778251-73385251: Successfully fit background model for 3,504,206 bp. Use segment r for 0 bp 2025-01-31 10:00:20,144 DEBUG chr5:68469751-71559501: Successfully fit background model for 2,717,106 bp. Use segment r for 0 bp 2025-01-31 10:00:20,493 DEBUG chr1:58261751-65211251: Successfully fit background model for 6,515,786 bp. Use segment r for 0 bp 2025-01-31 10:00:20,659 DEBUG chr2:73385251-80948251: Successfully fit background model for 7,173,310 bp. Use segment r for 0 bp 2025-01-31 10:00:20,730 DEBUG chr5:71559501-77941251: Successfully fit background model for 6,037,388 bp. Use segment r for 0 bp 2025-01-31 10:00:20,847 DEBUG chr3:71022251-79517751: Successfully fit background model for 7,568,771 bp. Use segment r for 0 bp 2025-01-31 10:00:20,991 DEBUG chr2:80948251-84649251: Successfully fit background model for 3,141,573 bp. Use segment r for 0 bp 2025-01-31 10:00:21,059 DEBUG chr2:84649251-85302251: Successfully fit background model for 615,965 bp. Use segment r for 0 bp 2025-01-31 10:00:21,143 DEBUG chr1:65211251-72223751: Successfully fit background model for 6,466,039 bp. Use segment r for 0 bp 2025-01-31 10:00:21,144 DEBUG chrX:50636751-73227751: Successfully fit background model for 18,372,169 bp. Use segment r for 0 bp 2025-01-31 10:00:21,166 DEBUG chr1:72223751-72308751: Successfully fit background model for 82,140 bp. Use segment r for 0 bp 2025-01-31 10:00:21,254 DEBUG chr5:77941251-83813001: Successfully fit background model for 5,244,908 bp. Use segment r for 0 bp 2025-01-31 10:00:21,260 DEBUG chr3:79517751-84021251: Successfully fit background model for 4,147,511 bp. Use segment r for 0 bp 2025-01-31 10:00:21,350 DEBUG chr1:72308751-74234251: Successfully fit background model for 1,823,865 bp. Use segment r for 0 bp 2025-01-31 10:00:21,415 DEBUG chrX:73227751-75781001: Successfully fit background model for 2,038,806 bp. Use segment r for 0 bp 2025-01-31 10:00:21,455 DEBUG chr2:85302251-89743251: Successfully fit background model for 3,872,589 bp. Use segment r for 0 bp 2025-01-31 10:00:21,487 DEBUG chr1:74234251-75560001: Successfully fit background model for 1,228,287 bp. Use segment r for 0 bp 2025-01-31 10:00:21,558 DEBUG chr4:64066001-81581751: Successfully fit background model for 15,512,856 bp. Use segment r for 0 bp 2025-01-31 10:00:21,571 DEBUG chr2:89743251-90841251: Successfully fit background model for 810,837 bp. Use segment r for 0 bp 2025-01-31 10:00:21,622 DEBUG chr3:84021251-87715251: Successfully fit background model for 3,516,803 bp. Use segment r for 0 bp 2025-01-31 10:00:21,746 DEBUG chr2:90841251-92379751: Successfully fit background model for 1,508,450 bp. Use segment r for 0 bp 2025-01-31 10:00:21,872 DEBUG chr3:87715251-90439751: Successfully fit background model for 2,588,756 bp. Use segment r for 0 bp 2025-01-31 10:00:21,984 DEBUG chr2:92379751-94779751: Successfully fit background model for 2,315,162 bp. Use segment r for 0 bp 2025-01-31 10:00:22,026 DEBUG chr4:81581751-86610751: Successfully fit background model for 4,669,978 bp. Use segment r for 0 bp 2025-01-31 10:00:22,103 DEBUG chr5:83813001-92073251: Successfully fit background model for 7,404,897 bp. Use segment r for 0 bp 2025-01-31 10:00:22,193 DEBUG chr1:75560001-82787251: Successfully fit background model for 6,675,025 bp. Use segment r for 0 bp 2025-01-31 10:00:22,212 DEBUG chr1:82787251-82842251: Successfully fit background model for 54,309 bp. Use segment r for 0 bp 2025-01-31 10:00:22,229 DEBUG chr3:90439751-94359251: Successfully fit background model for 3,009,492 bp. Use segment r for 0 bp 2025-01-31 10:00:22,312 DEBUG chr4:86610751-89715251: Successfully fit background model for 2,763,110 bp. Use segment r for 0 bp 2025-01-31 10:00:22,402 DEBUG chr1:82842251-84837751: Successfully fit background model for 1,817,557 bp. Use segment r for 0 bp 2025-01-31 10:00:22,456 DEBUG chr3:94359251-96801751: Successfully fit background model for 2,240,001 bp. Use segment r for 0 bp 2025-01-31 10:00:22,557 DEBUG chr1:84837751-86267251: Successfully fit background model for 893,794 bp. Use segment r for 0 bp 2025-01-31 10:00:22,593 DEBUG chr1:86267251-86534251: Successfully fit background model for 257,586 bp. Use segment r for 0 bp 2025-01-31 10:00:22,622 DEBUG chr2:94779751-101069251: Successfully fit background model for 5,236,137 bp. Use segment r for 0 bp 2025-01-31 10:00:22,630 DEBUG chr4:89715251-93016251: Successfully fit background model for 2,881,182 bp. Use segment r for 0 bp 2025-01-31 10:00:22,799 DEBUG chr3:96801751-100406751: Successfully fit background model for 3,175,466 bp. Use segment r for 0 bp 2025-01-31 10:00:23,013 DEBUG chr4:93016251-97209751: Successfully fit background model for 3,796,300 bp. Use segment r for 0 bp 2025-01-31 10:00:23,197 DEBUG chrX:75781001-92016251: Successfully fit background model for 13,756,517 bp. Use segment r for 0 bp 2025-01-31 10:00:23,229 DEBUG chrX:92016251-92084251: Successfully fit background model for 53,187 bp. Use segment r for 0 bp 2025-01-31 10:00:23,259 DEBUG chr2:101069251-107973751: Successfully fit background model for 6,537,889 bp. Use segment r for 0 bp 2025-01-31 10:00:23,286 DEBUG chr1:86534251-93607251: Successfully fit background model for 6,787,979 bp. Use segment r for 0 bp 2025-01-31 10:00:23,325 DEBUG chr1:93607251-93836001: Successfully fit background model for 221,935 bp. Use segment r for 0 bp 2025-01-31 10:00:23,410 DEBUG chrX:92084251-93896751: Successfully fit background model for 1,581,823 bp. Use segment r for 0 bp 2025-01-31 10:00:23,506 DEBUG chrX:93896751-94851751: Successfully fit background model for 805,928 bp. Use segment r for 0 bp 2025-01-31 10:00:23,711 DEBUG chr3:100406751-108892751: Successfully fit background model for 8,052,325 bp. Use segment r for 0 bp 2025-01-31 10:00:23,801 DEBUG chr1:93836001-98655251: Successfully fit background model for 4,111,160 bp. Use segment r for 0 bp 2025-01-31 10:00:23,865 DEBUG chr5:92073251-103653751: Successfully fit background model for 8,817,621 bp. Use segment r for 5,035 bp 2025-01-31 10:00:23,919 DEBUG chr5:103653751-103971251: Successfully fit background model for 308,842 bp. Use segment r for 0 bp 2025-01-31 10:00:24,021 DEBUG chr4:97209751-106761251: Successfully fit background model for 8,986,691 bp. Use segment r for 0 bp 2025-01-31 10:00:24,070 DEBUG chr2:107973751-116251251: Successfully fit background model for 7,513,231 bp. Use segment r for 0 bp 2025-01-31 10:00:24,142 DEBUG chrX:94851751-101253751: Successfully fit background model for 5,569,863 bp. Use segment r for 0 bp 2025-01-31 10:00:24,303 DEBUG chr2:116251251-118653251: Successfully fit background model for 2,250,351 bp. Use segment r for 0 bp 2025-01-31 10:00:24,334 DEBUG chr3:108892751-115634251: Successfully fit background model for 5,779,487 bp. Use segment r for 0 bp 2025-01-31 10:00:24,356 DEBUG chr4:106761251-110351751: Successfully fit background model for 3,404,205 bp. Use segment r for 0 bp 2025-01-31 10:00:24,364 DEBUG chr1:98655251-104369251: Successfully fit background model for 5,012,373 bp. Use segment r for 0 bp 2025-01-31 10:00:24,449 DEBUG chr3:115634251-116737251: Successfully fit background model for 1,059,903 bp. Use segment r for 0 bp 2025-01-31 10:00:24,512 DEBUG chr4:110351751-111927251: Successfully fit background model for 1,394,893 bp. Use segment r for 0 bp 2025-01-31 10:00:24,536 DEBUG chr5:103971251-110092001: Successfully fit background model for 5,453,022 bp. Use segment r for 0 bp 2025-01-31 10:00:24,573 DEBUG chrX:101253751-105989751: Successfully fit background model for 4,179,590 bp. Use segment r for 0 bp 2025-01-31 10:00:24,657 DEBUG chr1:104369251-107586251: Successfully fit background model for 2,951,201 bp. Use segment r for 0 bp 2025-01-31 10:00:24,687 DEBUG chr2:118653251-122921751: Successfully fit background model for 4,064,763 bp. Use segment r for 0 bp 2025-01-31 10:00:24,803 DEBUG chr2:122921751-123971751: Successfully fit background model for 936,415 bp. Use segment r for 0 bp 2025-01-31 10:00:24,806 DEBUG chr4:111927251-114031251: Successfully fit background model for 1,823,019 bp. Use segment r for 11,006 bp 2025-01-31 10:00:24,851 DEBUG chr3:116737251-121153751: Successfully fit background model for 4,076,950 bp. Use segment r for 0 bp 2025-01-31 10:00:24,875 DEBUG chr5:110092001-113842251: Successfully fit background model for 3,652,199 bp. Use segment r for 0 bp 2025-01-31 10:00:24,924 DEBUG chr4:114031251-114985751: Successfully fit background model for 877,773 bp. Use segment r for 0 bp 2025-01-31 10:00:25,046 DEBUG chr5:113842251-115577251: Successfully fit background model for 1,686,866 bp. Use segment r for 0 bp 2025-01-31 10:00:25,060 DEBUG chr3:121153751-123353251: Successfully fit background model for 2,139,479 bp. Use segment r for 0 bp 2025-01-31 10:00:25,136 DEBUG chr2:123971751-127246251: Successfully fit background model for 3,088,041 bp. Use segment r for 0 bp 2025-01-31 10:00:25,470 DEBUG chr3:123353251-127183751: Successfully fit background model for 3,516,076 bp. Use segment r for 0 bp 2025-01-31 10:00:25,476 DEBUG chr5:115577251-120080751: Successfully fit background model for 4,409,243 bp. Use segment r for 0 bp 2025-01-31 10:00:25,608 DEBUG chr2:127246251-132244751: Successfully fit background model for 4,799,018 bp. Use segment r for 0 bp 2025-01-31 10:00:25,786 DEBUG chr3:127183751-130674751: Successfully fit background model for 3,303,995 bp. Use segment r for 0 bp 2025-01-31 10:00:25,863 DEBUG chr1:107586251-118268251: Successfully fit background model for 9,299,400 bp. Use segment r for 0 bp 2025-01-31 10:00:25,962 DEBUG chr5:120080751-125407251: Successfully fit background model for 5,101,563 bp. Use segment r for 0 bp 2025-01-31 10:00:26,001 DEBUG chr2:132244751-136301751: Successfully fit background model for 3,802,015 bp. Use segment r for 0 bp 2025-01-31 10:00:26,049 DEBUG chr1:118268251-120117251: Successfully fit background model for 1,794,527 bp. Use segment r for 0 bp 2025-01-31 10:00:26,209 DEBUG chr3:130674751-135191001: Successfully fit background model for 4,055,193 bp. Use segment r for 0 bp 2025-01-31 10:00:26,278 DEBUG chr3:135191001-135801501: Successfully fit background model for 583,184 bp. Use segment r for 0 bp 2025-01-31 10:00:26,382 DEBUG chr5:125407251-129722751: Successfully fit background model for 4,128,059 bp. Use segment r for 0 bp 2025-01-31 10:00:26,435 DEBUG chr5:129722751-130163251: Successfully fit background model for 379,902 bp. Use segment r for 0 bp 2025-01-31 10:00:26,598 DEBUG chr3:135801501-139099251: Successfully fit background model for 3,096,591 bp. Use segment r for 0 bp 2025-01-31 10:00:26,758 DEBUG chr4:114985751-131683251: Successfully fit background model for 15,033,867 bp. Use segment r for 0 bp 2025-01-31 10:00:26,822 DEBUG chr5:130163251-134133251: Successfully fit background model for 3,806,012 bp. Use segment r for 0 bp 2025-01-31 10:00:26,856 DEBUG chr3:139099251-141904251: Successfully fit background model for 2,551,855 bp. Use segment r for 0 bp 2025-01-31 10:00:27,199 DEBUG chr4:131683251-136240751: Successfully fit background model for 4,437,544 bp. Use segment r for 0 bp 2025-01-31 10:00:27,320 DEBUG chr1:120117251-131050751: Successfully fit background model for 10,161,145 bp. Use segment r for 0 bp 2025-01-31 10:00:27,381 DEBUG chr3:141904251-147066251: Successfully fit background model for 4,904,783 bp. Use segment r for 0 bp 2025-01-31 10:00:27,630 DEBUG chr2:136301751-150770751: Successfully fit background model for 13,387,784 bp. Use segment r for 0 bp 2025-01-31 10:00:27,654 DEBUG chr4:136240751-140678751: Successfully fit background model for 4,350,488 bp. Use segment r for 0 bp 2025-01-31 10:00:27,667 DEBUG chrX:105989751-124238001: Successfully fit background model for 14,692,479 bp. Use segment r for 1,523 bp 2025-01-31 10:00:27,766 DEBUG chr4:140678751-141746251: Successfully fit background model for 1,039,855 bp. Use segment r for 0 bp 2025-01-31 10:00:27,772 DEBUG chr3:147066251-151543251: Successfully fit background model for 4,239,775 bp. Use segment r for 0 bp 2025-01-31 10:00:27,831 DEBUG chr1:131050751-136296251: Successfully fit background model for 5,117,215 bp. Use segment r for 0 bp 2025-01-31 10:00:27,918 DEBUG chr5:134133251-143974251: Successfully fit background model for 9,302,075 bp. Use segment r for 0 bp 2025-01-31 10:00:28,087 DEBUG chr3:151543251-155013751: Successfully fit background model for 3,278,834 bp. Use segment r for 0 bp 2025-01-31 10:00:28,139 DEBUG chr1:136296251-139568251: Successfully fit background model for 3,065,628 bp. Use segment r for 0 bp 2025-01-31 10:00:28,295 DEBUG chr3:155013751-157009751: Successfully fit background model for 1,836,791 bp. Use segment r for 0 bp 2025-01-31 10:00:28,384 DEBUG chr2:150770751-158570501: Successfully fit background model for 7,226,304 bp. Use segment r for 0 bp 2025-01-31 10:00:28,399 DEBUG chrX:126004000-134045751: Successfully fit background model for 6,925,756 bp. Use segment r for 0 bp 2025-01-31 10:00:28,400 DEBUG chr3:157009751-158040251: Successfully fit background model for 957,993 bp. Use segment r for 0 bp 2025-01-31 10:00:28,458 DEBUG chr1:139568251-142856751: Successfully fit background model for 2,825,892 bp. Use segment r for 0 bp 2025-01-31 10:00:28,480 DEBUG chrX:134045751-134628751: Successfully fit background model for 563,153 bp. Use segment r for 0 bp 2025-01-31 10:00:28,593 DEBUG chr3:158040251-160039680: Successfully fit background model for 1,619,709 bp. Use segment r for 0 bp 2025-01-31 10:00:28,626 DEBUG chr1:142856751-144502251: Successfully fit background model for 1,386,073 bp. Use segment r for 0 bp 2025-01-31 10:00:28,661 DEBUG chr5:143974251-151834684: Successfully fit background model for 7,171,847 bp. Use segment r for 0 bp 2025-01-31 10:00:28,725 DEBUG chr4:141746251-147847751: Successfully fit background model for 3,870,953 bp. Use segment r for 1,936 bp 2025-01-31 10:00:28,834 DEBUG chr2:158570501-163317251: Successfully fit background model for 4,538,396 bp. Use segment r for 0 bp 2025-01-31 10:00:29,125 DEBUG chr1:144502251-149341251: Successfully fit background model for 4,257,737 bp. Use segment r for 0 bp 2025-01-31 10:00:29,280 DEBUG chr2:163317251-168069251: Successfully fit background model for 4,579,261 bp. Use segment r for 0 bp 2025-01-31 10:00:29,405 DEBUG chr4:147847751-154835251: Successfully fit background model for 6,857,501 bp. Use segment r for 0 bp 2025-01-31 10:00:29,582 DEBUG chr4:154835251-156508116: Successfully fit background model for 1,384,109 bp. Use segment r for 0 bp 2025-01-31 10:00:29,659 DEBUG chr1:149341251-155024251: Successfully fit background model for 5,333,382 bp. Use segment r for 0 bp 2025-01-31 10:00:29,853 DEBUG chr1:155024251-156855751: Successfully fit background model for 1,722,119 bp. Use segment r for 0 bp 2025-01-31 10:00:30,028 DEBUG chr2:168069251-175179501: Successfully fit background model for 6,767,697 bp. Use segment r for 0 bp 2025-01-31 10:00:30,192 DEBUG chr1:156855751-160193751: Successfully fit background model for 3,187,088 bp. Use segment r for 0 bp 2025-01-31 10:00:30,343 DEBUG chr2:176701000-179658751: Successfully fit background model for 1,768,756 bp. Use segment r for 0 bp 2025-01-31 10:00:30,610 DEBUG chr2:179658751-182113224: Successfully fit background model for 2,261,907 bp. Use segment r for 0 bp 2025-01-31 10:00:31,862 DEBUG chrX:134628751-150433251: Successfully fit background model for 11,800,910 bp. Use segment r for 578 bp 2025-01-31 10:00:32,014 DEBUG chr1:160193751-171006751: Successfully fit background model for 10,093,556 bp. Use segment r for 0 bp 2025-01-31 10:00:32,063 DEBUG chrX:150433251-152143751: Successfully fit background model for 1,522,094 bp. Use segment r for 0 bp 2025-01-31 10:00:32,067 DEBUG chr1:171006751-171284751: Successfully fit background model for 254,844 bp. Use segment r for 0 bp 2025-01-31 10:00:32,189 DEBUG chr1:171284751-172278251: Successfully fit background model for 924,052 bp. Use segment r for 0 bp 2025-01-31 10:00:32,825 DEBUG chr1:172278251-178302251: Successfully fit background model for 5,438,090 bp. Use segment r for 0 bp 2025-01-31 10:00:32,841 DEBUG chrX:152143751-159253251: Successfully fit background model for 6,080,125 bp. Use segment r for 0 bp 2025-01-31 10:00:33,118 DEBUG chr1:178302251-181282251: Successfully fit background model for 2,872,179 bp. Use segment r for 0 bp 2025-01-31 10:00:33,355 DEBUG chrX:159253251-164346251: Successfully fit background model for 4,691,516 bp. Use segment r for 0 bp 2025-01-31 10:00:33,507 DEBUG chr1:181282251-185425751: Successfully fit background model for 3,865,617 bp. Use segment r for 0 bp 2025-01-31 10:00:33,530 DEBUG chr1:185425751-185517751: Successfully fit background model for 91,172 bp. Use segment r for 0 bp 2025-01-31 10:00:34,041 DEBUG chrX:164346251-169967751: Successfully fit background model for 5,116,921 bp. Use segment r for 0 bp 2025-01-31 10:00:34,159 DEBUG chrX:169967751-171031299: Successfully fit background model for 16,971 bp. Use segment r for 0 bp 2025-01-31 10:00:34,231 DEBUG chr1:185517751-190876251: Successfully fit background model for 5,158,672 bp. Use segment r for 0 bp 2025-01-31 10:00:34,352 DEBUG chr1:190876251-191945251: Successfully fit background model for 1,027,931 bp. Use segment r for 0 bp 2025-01-31 10:00:34,811 DEBUG chr1:191945251-195471971: Successfully fit background model for 3,174,474 bp. Use segment r for 0 bp 2025-01-31 10:01:56,776 DEBUG chr6:3050000-9354751: Successfully fit background model for 5,605,831 bp. Use segment r for 0 bp 2025-01-31 10:01:58,703 DEBUG chr6:9354751-28260251: Successfully fit background model for 16,737,468 bp. Use segment r for 0 bp 2025-01-31 10:01:59,257 DEBUG chr7:3004000-3576251: Successfully fit background model for 426,387 bp. Use segment r for 0 bp 2025-01-31 10:01:59,318 DEBUG chr6:28260251-35132251: Successfully fit background model for 6,573,202 bp. Use segment r for 0 bp 2025-01-31 10:01:59,420 DEBUG chr7:3576251-5106251: Successfully fit background model for 1,227,673 bp. Use segment r for 0 bp 2025-01-31 10:01:59,486 DEBUG chr7:5106251-5743251: Successfully fit background model for 466,048 bp. Use segment r for 0 bp 2025-01-31 10:01:59,614 DEBUG chr6:35132251-38337251: Successfully fit background model for 2,964,310 bp. Use segment r for 0 bp 2025-01-31 10:01:59,631 DEBUG chr7:5743251-7300751: Successfully fit background model for 1,312,608 bp. Use segment r for 0 bp 2025-01-31 10:01:59,712 DEBUG chr6:38337251-39301251: Successfully fit background model for 948,178 bp. Use segment r for 0 bp 2025-01-31 10:02:00,136 DEBUG chr6:39301251-43963251: Successfully fit background model for 4,179,932 bp. Use segment r for 0 bp 2025-01-31 10:02:00,354 DEBUG chr7:7300751-12380001: Successfully fit background model for 1,734,406 bp. Use segment r for 22,601 bp 2025-01-31 10:02:00,415 DEBUG chr7:12380001-12921251: Successfully fit background model for 433,875 bp. Use segment r for 0 bp 2025-01-31 10:02:00,421 DEBUG chr6:43963251-47174751: Successfully fit background model for 2,867,364 bp. Use segment r for 0 bp 2025-01-31 10:02:00,440 DEBUG chr7:12921251-13064751: Successfully fit background model for 137,173 bp. Use segment r for 0 bp 2025-01-31 10:02:00,715 DEBUG chr7:13064751-15894751: Successfully fit background model for 1,745,067 bp. Use segment r for 0 bp 2025-01-31 10:02:00,793 DEBUG chr6:47174751-51442251: Successfully fit background model for 3,912,016 bp. Use segment r for 0 bp 2025-01-31 10:02:00,830 DEBUG chr7:15894751-17068751: Successfully fit background model for 1,139,718 bp. Use segment r for 0 bp 2025-01-31 10:02:01,101 DEBUG chr7:17068751-18998751: Successfully fit background model for 1,388,776 bp. Use segment r for 4,958 bp 2025-01-31 10:02:01,186 DEBUG chr7:18998751-19819251: Successfully fit background model for 803,846 bp. Use segment r for 0 bp 2025-01-31 10:02:01,218 DEBUG chr7:19819251-20073001: Successfully fit background model for 219,362 bp. Use segment r for 0 bp 2025-01-31 10:02:01,437 DEBUG chr7:22785500-24285751: Successfully fit background model for 830,600 bp. Use segment r for 2,835 bp 2025-01-31 10:02:01,558 DEBUG chr6:51442251-59544501: Successfully fit background model for 7,529,432 bp. Use segment r for 0 bp 2025-01-31 10:02:01,595 DEBUG chr7:24285751-25926751: Successfully fit background model for 1,542,555 bp. Use segment r for 0 bp 2025-01-31 10:02:01,714 DEBUG chr7:25926751-27157751: Successfully fit background model for 963,063 bp. Use segment r for 0 bp 2025-01-31 10:02:02,089 DEBUG chr7:27157751-30974251: Successfully fit background model for 3,587,724 bp. Use segment r for 0 bp 2025-01-31 10:02:02,240 DEBUG chr6:59544501-66944251: Successfully fit background model for 6,558,895 bp. Use segment r for 0 bp 2025-01-31 10:02:02,342 DEBUG chr6:66944251-67889751: Successfully fit background model for 835,914 bp. Use segment r for 0 bp 2025-01-31 10:02:02,462 DEBUG chr7:30974251-33673751: Successfully fit background model for 1,124,514 bp. Use segment r for 7,397 bp 2025-01-31 10:02:02,605 DEBUG chr6:67889751-70709251: Successfully fit background model for 2,210,488 bp. Use segment r for 0 bp 2025-01-31 10:02:02,885 DEBUG chr7:33673751-38229251: Successfully fit background model for 4,372,893 bp. Use segment r for 0 bp 2025-01-31 10:02:02,938 DEBUG chr6:70709251-74159501: Successfully fit background model for 3,255,234 bp. Use segment r for 0 bp 2025-01-31 10:02:03,424 DEBUG chr6:74159501-79468751: Successfully fit background model for 4,780,780 bp. Use segment r for 0 bp 2025-01-31 10:02:03,641 DEBUG chr7:38229251-43516251: Successfully fit background model for 3,760,000 bp. Use segment r for 4,518 bp 2025-01-31 10:02:03,749 DEBUG chr6:79468751-82996251: Successfully fit background model for 3,207,733 bp. Use segment r for 0 bp 2025-01-31 10:02:03,774 DEBUG chr7:43516251-44815251: Successfully fit background model for 1,233,784 bp. Use segment r for 0 bp 2025-01-31 10:02:03,799 DEBUG chr6:82996251-83381251: Successfully fit background model for 377,392 bp. Use segment r for 0 bp 2025-01-31 10:02:03,863 DEBUG chr7:44815251-45682751: Successfully fit background model for 851,415 bp. Use segment r for 0 bp 2025-01-31 10:02:03,997 DEBUG chr7:45682751-47167751: Successfully fit background model for 1,455,234 bp. Use segment r for 0 bp 2025-01-31 10:02:04,062 DEBUG chr6:83381251-85896751: Successfully fit background model for 2,329,959 bp. Use segment r for 0 bp 2025-01-31 10:02:04,112 DEBUG chr7:47167751-48343751: Successfully fit background model for 939,826 bp. Use segment r for 0 bp 2025-01-31 10:02:04,262 DEBUG chr7:48343751-49995001: Successfully fit background model for 1,549,228 bp. Use segment r for 0 bp 2025-01-31 10:02:04,470 DEBUG chr7:49995001-52141501: Successfully fit background model for 1,869,577 bp. Use segment r for 0 bp 2025-01-31 10:02:04,633 DEBUG chr6:85896751-91976751: Successfully fit background model for 5,785,391 bp. Use segment r for 0 bp 2025-01-31 10:02:04,777 DEBUG chr7:52141501-55434001: Successfully fit background model for 2,905,391 bp. Use segment r for 0 bp 2025-01-31 10:02:04,902 DEBUG chr7:55434001-56676251: Successfully fit background model for 1,083,079 bp. Use segment r for 0 bp 2025-01-31 10:02:04,903 DEBUG chr10:3101500-33149251: Successfully fit background model for 27,314,361 bp. Use segment r for 0 bp 2025-01-31 10:02:05,385 DEBUG chr10:33149251-37980751: Successfully fit background model for 4,376,574 bp. Use segment r for 0 bp 2025-01-31 10:02:05,574 DEBUG chr10:37980751-40108501: Successfully fit background model for 1,951,211 bp. Use segment r for 0 bp 2025-01-31 10:02:05,810 DEBUG chr6:91976751-103495751: Successfully fit background model for 10,876,498 bp. Use segment r for 0 bp 2025-01-31 10:02:05,871 DEBUG chr10:40108501-43573751: Successfully fit background model for 3,326,310 bp. Use segment r for 0 bp 2025-01-31 10:02:05,938 DEBUG chr7:56676251-63882251: Successfully fit background model for 5,974,985 bp. Use segment r for 1,148 bp 2025-01-31 10:02:06,143 DEBUG chr10:43573751-46715751: Successfully fit background model for 2,928,423 bp. Use segment r for 0 bp 2025-01-31 10:02:06,379 DEBUG chr7:63882251-68871501: Successfully fit background model for 4,740,275 bp. Use segment r for 0 bp 2025-01-31 10:02:06,431 DEBUG chr10:46715751-50054251: Successfully fit background model for 2,914,888 bp. Use segment r for 0 bp 2025-01-31 10:02:06,715 DEBUG chr6:103495751-112695251: Successfully fit background model for 8,336,175 bp. Use segment r for 0 bp 2025-01-31 10:02:06,774 DEBUG chr7:68871501-73515251: Successfully fit background model for 4,336,289 bp. Use segment r for 0 bp 2025-01-31 10:02:06,817 DEBUG chr6:112695251-113652251: Successfully fit background model for 930,694 bp. Use segment r for 0 bp 2025-01-31 10:02:07,035 DEBUG chr7:73515251-76439251: Successfully fit background model for 2,684,203 bp. Use segment r for 0 bp 2025-01-31 10:02:07,087 DEBUG chr10:50054251-56973251: Successfully fit background model for 6,158,510 bp. Use segment r for 0 bp 2025-01-31 10:02:07,167 DEBUG chr7:76439251-77809501: Successfully fit background model for 1,260,585 bp. Use segment r for 0 bp 2025-01-31 10:02:07,318 DEBUG chr7:77809501-79240501: Successfully fit background model for 1,370,710 bp. Use segment r for 0 bp 2025-01-31 10:02:07,326 DEBUG chr10:56973251-59700251: Successfully fit background model for 2,198,642 bp. Use segment r for 0 bp 2025-01-31 10:02:07,469 DEBUG chr7:79240501-80857251: Successfully fit background model for 1,577,370 bp. Use segment r for 0 bp 2025-01-31 10:02:07,701 DEBUG chr6:113652251-122834751: Successfully fit background model for 8,509,996 bp. Use segment r for 0 bp 2025-01-31 10:02:07,701 DEBUG chr10:59700251-64160751: Successfully fit background model for 4,287,695 bp. Use segment r for 0 bp 2025-01-31 10:02:07,844 DEBUG chr7:80857251-84948751: Successfully fit background model for 3,856,156 bp. Use segment r for 0 bp 2025-01-31 10:02:07,919 DEBUG chr6:122834751-124374751: Successfully fit background model for 1,079,202 bp. Use segment r for 32 bp 2025-01-31 10:02:07,957 DEBUG chr10:64160751-66072251: Successfully fit background model for 1,654,630 bp. Use segment r for 79,297 bp 2025-01-31 10:02:07,995 DEBUG chr6:124374751-125139251: Successfully fit background model for 714,031 bp. Use segment r for 0 bp 2025-01-31 10:02:08,128 DEBUG chr7:84948751-88082251: Successfully fit background model for 2,764,571 bp. Use segment r for 0 bp 2025-01-31 10:02:08,377 DEBUG chr7:88082251-90635251: Successfully fit background model for 2,323,323 bp. Use segment r for 0 bp 2025-01-31 10:02:08,406 DEBUG chr6:125139251-129684751: Successfully fit background model for 4,301,382 bp. Use segment r for 0 bp 2025-01-31 10:02:08,586 DEBUG chr7:90635251-92868751: Successfully fit background model for 2,091,817 bp. Use segment r for 0 bp 2025-01-31 10:02:08,612 DEBUG chr7:92868751-93018751: Successfully fit background model for 130,558 bp. Use segment r for 0 bp 2025-01-31 10:02:08,757 DEBUG chr6:129684751-133367751: Successfully fit background model for 2,974,579 bp. Use segment r for 0 bp 2025-01-31 10:02:08,857 DEBUG chr7:93018751-95539251: Successfully fit background model for 2,231,161 bp. Use segment r for 0 bp 2025-01-31 10:02:08,895 DEBUG chr6:133367751-134791251: Successfully fit background model for 1,267,276 bp. Use segment r for 0 bp 2025-01-31 10:02:08,920 DEBUG chr6:134791251-134945751: Successfully fit background model for 151,336 bp. Use segment r for 0 bp 2025-01-31 10:02:08,957 DEBUG chr10:66072251-75633751: Successfully fit background model for 8,894,110 bp. Use segment r for 0 bp 2025-01-31 10:02:09,141 DEBUG chr7:95539251-98655751: Successfully fit background model for 2,963,881 bp. Use segment r for 0 bp 2025-01-31 10:02:09,313 DEBUG chr10:75633751-79643251: Successfully fit background model for 3,717,792 bp. Use segment r for 0 bp 2025-01-31 10:02:09,481 DEBUG chr10:79643251-81485751: Successfully fit background model for 1,811,058 bp. Use segment r for 0 bp 2025-01-31 10:02:09,546 DEBUG chr7:98655751-103085751: Successfully fit background model for 4,277,497 bp. Use segment r for 0 bp 2025-01-31 10:02:09,601 DEBUG chr10:81485751-82752251: Successfully fit background model for 838,524 bp. Use segment r for 0 bp 2025-01-31 10:02:10,383 DEBUG chr7:103085751-109083251: Successfully fit background model for 4,758,585 bp. Use segment r for 3,535 bp 2025-01-31 10:02:10,412 DEBUG chr10:82752251-91080751: Successfully fit background model for 7,782,134 bp. Use segment r for 0 bp 2025-01-31 10:02:10,437 DEBUG chr10:91080751-91192251: Successfully fit background model for 108,632 bp. Use segment r for 0 bp 2025-01-31 10:02:10,477 DEBUG chr6:134945751-149736546: Successfully fit background model for 13,751,401 bp. Use segment r for 0 bp 2025-01-31 10:02:10,560 DEBUG chr7:109083251-110979751: Successfully fit background model for 1,836,929 bp. Use segment r for 0 bp 2025-01-31 10:02:11,467 DEBUG chr10:91192251-100653251: Successfully fit background model for 8,890,968 bp. Use segment r for 0 bp 2025-01-31 10:02:11,856 DEBUG chr10:100653251-104762251: Successfully fit background model for 3,706,159 bp. Use segment r for 0 bp 2025-01-31 10:02:12,099 DEBUG chr7:110979751-125388251: Successfully fit background model for 13,737,460 bp. Use segment r for 0 bp 2025-01-31 10:02:12,408 DEBUG chr7:125388251-128459751: Successfully fit background model for 2,966,336 bp. Use segment r for 0 bp 2025-01-31 10:02:12,756 DEBUG chr10:104762251-113790251: Successfully fit background model for 8,331,579 bp. Use segment r for 0 bp 2025-01-31 10:02:13,687 DEBUG chr7:128459751-140803751: Successfully fit background model for 11,784,914 bp. Use segment r for 0 bp 2025-01-31 10:02:13,763 DEBUG chr10:113790251-124178251: Successfully fit background model for 9,746,593 bp. Use segment r for 0 bp 2025-01-31 10:02:13,784 DEBUG chr7:140803751-141691751: Successfully fit background model for 867,720 bp. Use segment r for 0 bp 2025-01-31 10:02:14,009 DEBUG chr10:124178251-126895251: Successfully fit background model for 2,525,274 bp. Use segment r for 0 bp 2025-01-31 10:02:14,113 DEBUG chr7:141691751-145441459: Successfully fit background model for 3,482,738 bp. Use segment r for 0 bp 2025-01-31 10:02:14,182 DEBUG chr10:126895251-128796251: Successfully fit background model for 1,846,075 bp. Use segment r for 0 bp 2025-01-31 10:02:14,238 DEBUG chr10:128796251-129347751: Successfully fit background model for 461,693 bp. Use segment r for 0 bp 2025-01-31 10:02:14,388 DEBUG chr10:129347751-130694993: Successfully fit background model for 1,046,507 bp. Use segment r for 0 bp 2025-01-31 10:02:16,148 DEBUG chr8:3070000-4680251: Successfully fit background model for 1,414,288 bp. Use segment r for 0 bp 2025-01-31 10:02:16,305 DEBUG chr14:3006500-5127001: Successfully fit background model for 72,080 bp. Use segment r for 2,691 bp 2025-01-31 10:02:16,561 DEBUG chr8:4680251-7371751: Successfully fit background model for 2,357,652 bp. Use segment r for 0 bp 2025-01-31 10:02:16,775 DEBUG chr8:7371751-9605751: Successfully fit background model for 2,095,875 bp. Use segment r for 0 bp 2025-01-31 10:02:17,285 DEBUG chr8:9605751-14878751: Successfully fit background model for 5,094,799 bp. Use segment r for 0 bp 2025-01-31 10:02:18,552 DEBUG chr8:14878751-22164751: Successfully fit background model for 5,117,331 bp. Use segment r for 34,437 bp 2025-01-31 10:02:18,654 DEBUG chr8:22164751-23085251: Successfully fit background model for 893,201 bp. Use segment r for 0 bp 2025-01-31 10:02:18,996 DEBUG chr14:5841000-19685251: Successfully fit background model for 10,923,190 bp. Use segment r for 10,020 bp 2025-01-31 10:02:19,025 DEBUG chr8:23085251-26972251: Successfully fit background model for 3,713,802 bp. Use segment r for 0 bp 2025-01-31 10:02:19,081 DEBUG chr8:26972251-27461751: Successfully fit background model for 454,408 bp. Use segment r for 0 bp 2025-01-31 10:02:19,230 DEBUG chr14:19685251-21860751: Successfully fit background model for 2,105,718 bp. Use segment r for 0 bp 2025-01-31 10:02:19,393 DEBUG chr8:27461751-30537001: Successfully fit background model for 2,703,393 bp. Use segment r for 0 bp 2025-01-31 10:02:19,680 DEBUG chr8:30537001-33592751: Successfully fit background model for 2,822,587 bp. Use segment r for 0 bp 2025-01-31 10:02:19,979 DEBUG chr8:33592751-36986751: Successfully fit background model for 3,236,171 bp. Use segment r for 0 bp 2025-01-31 10:02:20,067 DEBUG chr14:21860751-29840751: Successfully fit background model for 7,205,395 bp. Use segment r for 0 bp 2025-01-31 10:02:20,267 DEBUG chr14:29840751-31946751: Successfully fit background model for 2,049,167 bp. Use segment r for 0 bp 2025-01-31 10:02:20,564 DEBUG chr14:31946751-35209751: Successfully fit background model for 3,135,635 bp. Use segment r for 0 bp 2025-01-31 10:02:20,605 DEBUG chr8:36986751-43672751: Successfully fit background model for 5,920,132 bp. Use segment r for 0 bp 2025-01-31 10:02:20,786 DEBUG chr14:35209751-37432751: Successfully fit background model for 2,017,269 bp. Use segment r for 0 bp 2025-01-31 10:02:21,056 DEBUG chr14:37432751-40260751: Successfully fit background model for 2,533,660 bp. Use segment r for 0 bp 2025-01-31 10:02:21,216 DEBUG chr8:43672751-49955751: Successfully fit background model for 5,911,055 bp. Use segment r for 0 bp 2025-01-31 10:02:21,511 DEBUG chr8:49955751-53225251: Successfully fit background model for 2,942,135 bp. Use segment r for 0 bp 2025-01-31 10:02:22,277 DEBUG chr8:53225251-60942751: Successfully fit background model for 6,571,316 bp. Use segment r for 0 bp 2025-01-31 10:02:22,298 DEBUG chr8:60942751-60993751: Successfully fit background model for 50,151 bp. Use segment r for 0 bp 2025-01-31 10:02:22,868 DEBUG chr14:40260751-49244251: Successfully fit background model for 5,865,474 bp. Use segment r for 584 bp 2025-01-31 10:02:23,036 DEBUG chr14:49244251-50784751: Successfully fit background model for 1,321,415 bp. Use segment r for 0 bp 2025-01-31 10:02:23,160 DEBUG chr14:50784751-51984251: Successfully fit background model for 997,948 bp. Use segment r for 0 bp 2025-01-31 10:02:23,201 DEBUG chr14:51984251-52327751: Successfully fit background model for 334,518 bp. Use segment r for 0 bp 2025-01-31 10:02:23,462 DEBUG chr14:52327751-54408251: Successfully fit background model for 1,271,301 bp. Use segment r for 0 bp 2025-01-31 10:02:23,578 DEBUG chr8:60993751-69746751: Successfully fit background model for 7,807,819 bp. Use segment r for 0 bp 2025-01-31 10:02:23,587 DEBUG chr14:54408251-55659751: Successfully fit background model for 1,198,266 bp. Use segment r for 0 bp 2025-01-31 10:02:23,699 DEBUG chr8:69746751-70922501: Successfully fit background model for 1,151,953 bp. Use segment r for 0 bp 2025-01-31 10:02:23,863 DEBUG chr8:70922501-72452751: Successfully fit background model for 1,283,545 bp. Use segment r for 0 bp 2025-01-31 10:02:25,900 DEBUG chr8:72452751-83562751: Successfully fit background model for 10,073,727 bp. Use segment r for 13,204 bp 2025-01-31 10:02:26,017 DEBUG chr8:83562751-84637251: Successfully fit background model for 1,054,275 bp. Use segment r for 0 bp 2025-01-31 10:02:26,072 DEBUG chr8:84637251-85084251: Successfully fit background model for 439,976 bp. Use segment r for 0 bp 2025-01-31 10:02:26,348 DEBUG chr14:55659751-70981251: Successfully fit background model for 14,155,324 bp. Use segment r for 0 bp 2025-01-31 10:02:26,813 DEBUG chr14:70981251-72659251: Successfully fit background model for 1,551,137 bp. Use segment r for 0 bp 2025-01-31 10:02:27,424 DEBUG chr8:85084251-94003751: Successfully fit background model for 8,517,634 bp. Use segment r for 0 bp 2025-01-31 10:02:27,692 DEBUG chr14:72659251-80048251: Successfully fit background model for 6,949,265 bp. Use segment r for 0 bp 2025-01-31 10:02:27,814 DEBUG chr8:94003751-96582751: Successfully fit background model for 2,441,804 bp. Use segment r for 0 bp 2025-01-31 10:02:28,208 DEBUG chr14:80048251-86058751: Successfully fit background model for 5,375,133 bp. Use segment r for 0 bp 2025-01-31 10:02:28,364 DEBUG chr14:86058751-87720751: Successfully fit background model for 1,541,706 bp. Use segment r for 0 bp 2025-01-31 10:02:28,404 DEBUG chr8:96582751-102912501: Successfully fit background model for 5,789,619 bp. Use segment r for 0 bp 2025-01-31 10:02:28,680 DEBUG chr8:102912501-104570251: Successfully fit background model for 1,578,251 bp. Use segment r for 0 bp 2025-01-31 10:02:28,935 DEBUG chr8:104570251-107375751: Successfully fit background model for 2,626,348 bp. Use segment r for 0 bp 2025-01-31 10:02:29,375 DEBUG chr8:107375751-110682251: Successfully fit background model for 3,213,102 bp. Use segment r for 0 bp 2025-01-31 10:02:29,409 DEBUG chr14:87720751-97896751: Successfully fit background model for 9,223,406 bp. Use segment r for 0 bp 2025-01-31 10:02:29,600 DEBUG chr8:110682251-111850251: Successfully fit background model for 1,136,791 bp. Use segment r for 0 bp 2025-01-31 10:02:30,365 DEBUG chr14:97896751-106713751: Successfully fit background model for 8,124,374 bp. Use segment r for 0 bp 2025-01-31 10:02:30,975 DEBUG chr8:111850251-116865251: Successfully fit background model for 4,538,189 bp. Use segment r for 292,685 bp 2025-01-31 10:02:31,038 DEBUG chr14:106713751-113740251: Successfully fit background model for 6,346,470 bp. Use segment r for 0 bp 2025-01-31 10:02:31,440 DEBUG chr8:116865251-119343751: Successfully fit background model for 2,406,070 bp. Use segment r for 0 bp 2025-01-31 10:02:31,723 DEBUG chr14:113740251-121253251: Successfully fit background model for 6,934,405 bp. Use segment r for 0 bp 2025-01-31 10:02:31,981 DEBUG chr14:121253251-123899251: Successfully fit background model for 2,408,812 bp. Use segment r for 0 bp 2025-01-31 10:02:32,088 DEBUG chr14:123899251-124902244: Successfully fit background model for 752,968 bp. Use segment r for 0 bp 2025-01-31 10:02:32,344 DEBUG chr8:119343751-123966751: Successfully fit background model for 4,422,335 bp. Use segment r for 0 bp 2025-01-31 10:02:32,840 DEBUG chr8:123966751-126578751: Successfully fit background model for 2,521,610 bp. Use segment r for 0 bp 2025-01-31 10:02:33,335 DEBUG chr8:126578751-129401213: Successfully fit background model for 2,528,267 bp. Use segment r for 0 bp 2025-01-31 10:02:38,029 DEBUG chr9:3002500-13296251: Successfully fit background model for 9,011,884 bp. Use segment r for 0 bp 2025-01-31 10:02:38,211 DEBUG chr9:13296251-15237251: Successfully fit background model for 1,761,240 bp. Use segment r for 0 bp 2025-01-31 10:02:38,809 DEBUG chr9:15237251-20640751: Successfully fit background model for 4,780,892 bp. Use segment r for 0 bp 2025-01-31 10:02:38,969 DEBUG chr9:20640751-22386251: Successfully fit background model for 1,680,307 bp. Use segment r for 0 bp 2025-01-31 10:02:39,252 DEBUG chr9:22386251-25700251: Successfully fit background model for 3,046,380 bp. Use segment r for 0 bp 2025-01-31 10:02:39,781 DEBUG chr9:25700251-31201751: Successfully fit background model for 5,224,670 bp. Use segment r for 0 bp 2025-01-31 10:02:40,433 DEBUG chr9:31201751-37831751: Successfully fit background model for 6,148,120 bp. Use segment r for 0 bp 2025-01-31 10:02:40,620 DEBUG chr9:37831751-39804751: Successfully fit background model for 1,772,155 bp. Use segment r for 0 bp 2025-01-31 10:02:40,930 DEBUG chr9:39804751-43101251: Successfully fit background model for 3,159,106 bp. Use segment r for 0 bp 2025-01-31 10:02:41,018 DEBUG chr9:43101251-44064251: Successfully fit background model for 950,935 bp. Use segment r for 0 bp 2025-01-31 10:02:41,077 DEBUG chr9:44064251-44646251: Successfully fit background model for 555,527 bp. Use segment r for 0 bp 2025-01-31 10:02:42,386 DEBUG chr9:44646251-56832751: Successfully fit background model for 11,644,477 bp. Use segment r for 0 bp 2025-01-31 10:02:42,648 DEBUG chr9:56832751-59752251: Successfully fit background model for 2,835,614 bp. Use segment r for 0 bp 2025-01-31 10:02:42,832 DEBUG chr9:59752251-61865751: Successfully fit background model for 2,066,588 bp. Use segment r for 0 bp 2025-01-31 10:02:43,302 DEBUG chr9:61865751-66880751: Successfully fit background model for 4,876,769 bp. Use segment r for 0 bp 2025-01-31 10:02:44,851 DEBUG chr9:66880751-79010501: Successfully fit background model for 11,451,489 bp. Use segment r for 0 bp 2025-01-31 10:02:45,979 DEBUG chr9:79010501-90112251: Successfully fit background model for 9,697,619 bp. Use segment r for 0 bp 2025-01-31 10:02:46,054 DEBUG chr9:90112251-90610751: Successfully fit background model for 440,418 bp. Use segment r for 0 bp 2025-01-31 10:02:46,385 DEBUG chr9:90610751-94001251: Successfully fit background model for 3,015,617 bp. Use segment r for 0 bp 2025-01-31 10:02:47,668 DEBUG chr9:94001251-106164251: Successfully fit background model for 11,604,319 bp. Use segment r for 0 bp 2025-01-31 10:02:48,090 DEBUG chr9:106164251-110661251: Successfully fit background model for 4,144,052 bp. Use segment r for 0 bp 2025-01-31 10:02:49,000 DEBUG chr9:110661251-119320251: Successfully fit background model for 8,182,555 bp. Use segment r for 0 bp 2025-01-31 10:02:49,499 DEBUG chr9:119320251-124595110: Successfully fit background model for 4,732,153 bp. Use segment r for 0 bp 2025-01-31 10:03:26,944 DEBUG chr11:3100500-3203751: Successfully fit background model for 76,214 bp. Use segment r for 0 bp 2025-01-31 10:03:27,349 DEBUG chr11:3203751-6770251: Successfully fit background model for 3,417,400 bp. Use segment r for 0 bp 2025-01-31 10:03:27,580 DEBUG chr11:6770251-9240751: Successfully fit background model for 2,241,509 bp. Use segment r for 0 bp 2025-01-31 10:03:27,755 DEBUG chr11:9240751-11076751: Successfully fit background model for 1,621,595 bp. Use segment r for 0 bp 2025-01-31 10:03:27,890 DEBUG chr11:11076751-12469751: Successfully fit background model for 1,279,249 bp. Use segment r for 0 bp 2025-01-31 10:03:28,260 DEBUG chr11:12469751-16172251: Successfully fit background model for 3,257,304 bp. Use segment r for 0 bp 2025-01-31 10:03:28,368 DEBUG chr11:16172251-17290751: Successfully fit background model for 1,010,375 bp. Use segment r for 0 bp 2025-01-31 10:03:28,561 DEBUG chr11:17290751-19200751: Successfully fit background model for 1,745,962 bp. Use segment r for 0 bp 2025-01-31 10:03:29,051 DEBUG chr11:19200751-24220251: Successfully fit background model for 4,736,344 bp. Use segment r for 0 bp 2025-01-31 10:03:29,442 DEBUG chr11:24220251-28710251: Successfully fit background model for 4,040,981 bp. Use segment r for 0 bp 2025-01-31 10:03:29,962 DEBUG chr11:28710251-34318751: Successfully fit background model for 5,253,557 bp. Use segment r for 0 bp 2025-01-31 10:03:30,145 DEBUG chr11:34318751-36370751: Successfully fit background model for 1,864,090 bp. Use segment r for 0 bp 2025-01-31 10:03:30,653 DEBUG chr11:36370751-41989751: Successfully fit background model for 5,196,246 bp. Use segment r for 0 bp 2025-01-31 10:03:31,235 DEBUG chr11:41989751-48771251: Successfully fit background model for 6,317,078 bp. Use segment r for 0 bp 2025-01-31 10:03:31,257 DEBUG chr11:48771251-48874251: Successfully fit background model for 100,029 bp. Use segment r for 0 bp 2025-01-31 10:03:31,578 DEBUG chr13:3000500-4529751: Successfully fit background model for 1,283,705 bp. Use segment r for 0 bp 2025-01-31 10:03:31,967 DEBUG chr13:4529751-8747751: Successfully fit background model for 3,749,444 bp. Use segment r for 0 bp 2025-01-31 10:03:32,347 DEBUG chr11:48874251-58902751: Successfully fit background model for 9,415,877 bp. Use segment r for 0 bp 2025-01-31 10:03:32,349 DEBUG chr12:3012000-5404251: Successfully fit background model for 2,207,711 bp. Use segment r for 0 bp 2025-01-31 10:03:32,481 DEBUG chr12:5404251-6806501: Successfully fit background model for 1,251,428 bp. Use segment r for 0 bp 2025-01-31 10:03:32,542 DEBUG chr13:8747751-14750751: Successfully fit background model for 5,109,131 bp. Use segment r for 0 bp 2025-01-31 10:03:32,689 DEBUG chr11:58902751-62521251: Successfully fit background model for 3,440,531 bp. Use segment r for 0 bp 2025-01-31 10:03:33,093 DEBUG chr13:14750751-21159001: Successfully fit background model for 5,783,152 bp. Use segment r for 0 bp 2025-01-31 10:03:33,116 DEBUG chr13:21159001-21280251: Successfully fit background model for 117,239 bp. Use segment r for 0 bp 2025-01-31 10:03:33,165 DEBUG chr13:21280251-21709751: Successfully fit background model for 395,897 bp. Use segment r for 0 bp 2025-01-31 10:03:33,201 DEBUG chr13:21709751-22056751: Successfully fit background model for 291,397 bp. Use segment r for 0 bp 2025-01-31 10:03:33,251 DEBUG chr11:62521251-68965751: Successfully fit background model for 6,218,659 bp. Use segment r for 0 bp 2025-01-31 10:03:33,308 DEBUG chr13:22056751-23260751: Successfully fit background model for 904,230 bp. Use segment r for 0 bp 2025-01-31 10:03:33,358 DEBUG chr13:23260751-23773751: Successfully fit background model for 471,063 bp. Use segment r for 0 bp 2025-01-31 10:03:33,413 DEBUG chr11:68965751-70688751: Successfully fit background model for 1,683,360 bp. Use segment r for 0 bp 2025-01-31 10:03:33,444 DEBUG chr13:23773751-24739751: Successfully fit background model for 927,448 bp. Use segment r for 0 bp 2025-01-31 10:03:33,548 DEBUG chr13:24739751-25912251: Successfully fit background model for 1,077,728 bp. Use segment r for 0 bp 2025-01-31 10:03:33,656 DEBUG chr11:70688751-73297751: Successfully fit background model for 2,468,591 bp. Use segment r for 0 bp 2025-01-31 10:03:33,723 DEBUG chr13:25912251-27836251: Successfully fit background model for 1,719,775 bp. Use segment r for 0 bp 2025-01-31 10:03:33,730 DEBUG chr11:73297751-74035251: Successfully fit background model for 605,083 bp. Use segment r for 0 bp 2025-01-31 10:03:33,806 DEBUG chr11:74035251-74829751: Successfully fit background model for 730,876 bp. Use segment r for 0 bp 2025-01-31 10:03:33,821 DEBUG chr11:74829751-74899251: Successfully fit background model for 61,792 bp. Use segment r for 0 bp 2025-01-31 10:03:34,291 DEBUG chr11:74899251-79961251: Successfully fit background model for 4,918,341 bp. Use segment r for 0 bp 2025-01-31 10:03:34,690 DEBUG chr11:79961251-84560751: Successfully fit background model for 4,398,643 bp. Use segment r for 0 bp 2025-01-31 10:03:35,116 DEBUG chr11:84560751-89523751: Successfully fit background model for 4,813,036 bp. Use segment r for 0 bp 2025-01-31 10:03:35,299 DEBUG chr12:6806501-24562251: Successfully fit background model for 12,457,923 bp. Use segment r for 1,371 bp 2025-01-31 10:03:35,349 DEBUG chr12:24562251-24819251: Successfully fit background model for 243,486 bp. Use segment r for 0 bp 2025-01-31 10:03:35,512 DEBUG chr11:89523751-94126751: Successfully fit background model for 4,297,618 bp. Use segment r for 0 bp 2025-01-31 10:03:35,766 DEBUG chr11:94126751-96902751: Successfully fit background model for 2,710,847 bp. Use segment r for 0 bp 2025-01-31 10:03:35,945 DEBUG chr11:96902751-98909751: Successfully fit background model for 1,961,470 bp. Use segment r for 0 bp 2025-01-31 10:03:36,017 DEBUG chr13:27836251-48795751: Successfully fit background model for 19,658,138 bp. Use segment r for 0 bp 2025-01-31 10:03:36,073 DEBUG chr11:98909751-100281751: Successfully fit background model for 1,297,131 bp. Use segment r for 0 bp 2025-01-31 10:03:36,089 DEBUG chr13:48795751-49243751: Successfully fit background model for 440,626 bp. Use segment r for 0 bp 2025-01-31 10:03:36,581 DEBUG chr13:49243751-54442751: Successfully fit background model for 4,592,623 bp. Use segment r for 0 bp 2025-01-31 10:03:36,624 DEBUG chr12:24819251-36869251: Successfully fit background model for 11,339,528 bp. Use segment r for 0 bp 2025-01-31 10:03:36,689 DEBUG chr11:100281751-106973251: Successfully fit background model for 6,463,258 bp. Use segment r for 0 bp 2025-01-31 10:03:36,690 DEBUG chr13:54442751-55598251: Successfully fit background model for 1,113,902 bp. Use segment r for 0 bp 2025-01-31 10:03:36,922 DEBUG chr13:55598251-58006751: Successfully fit background model for 2,352,584 bp. Use segment r for 0 bp 2025-01-31 10:03:37,009 DEBUG chr11:106973251-110675251: Successfully fit background model for 3,573,843 bp. Use segment r for 0 bp 2025-01-31 10:03:37,170 DEBUG chr13:58006751-60848251: Successfully fit background model for 2,738,365 bp. Use segment r for 0 bp 2025-01-31 10:03:37,173 DEBUG chr11:110675251-112461751: Successfully fit background model for 1,700,691 bp. Use segment r for 0 bp 2025-01-31 10:03:37,437 DEBUG chr11:112461751-115144501: Successfully fit background model for 2,590,172 bp. Use segment r for 0 bp 2025-01-31 10:03:37,466 DEBUG chr13:60848251-63134251: Successfully fit background model for 1,707,239 bp. Use segment r for 44,678 bp 2025-01-31 10:03:37,575 DEBUG chr13:63134251-64304751: Successfully fit background model for 1,122,842 bp. Use segment r for 0 bp 2025-01-31 10:03:37,614 DEBUG chr11:115144501-117037751: Successfully fit background model for 1,827,829 bp. Use segment r for 0 bp 2025-01-31 10:03:38,072 DEBUG chr11:117037751-122082543: Successfully fit background model for 4,794,424 bp. Use segment r for 0 bp 2025-01-31 10:03:38,993 DEBUG chr12:36869251-51688251: Successfully fit background model for 13,227,536 bp. Use segment r for 132,678 bp 2025-01-31 10:03:39,085 DEBUG chr13:64304751-73253751: Successfully fit background model for 6,858,855 bp. Use segment r for 2,785 bp 2025-01-31 10:03:39,090 DEBUG chr12:51688251-52500751: Successfully fit background model for 748,154 bp. Use segment r for 0 bp 2025-01-31 10:03:39,160 DEBUG chr13:73253751-73936751: Successfully fit background model for 670,845 bp. Use segment r for 0 bp 2025-01-31 10:03:39,281 DEBUG chr12:52500751-54693751: Successfully fit background model for 2,105,629 bp. Use segment r for 0 bp 2025-01-31 10:03:39,355 DEBUG chr12:54693751-55383251: Successfully fit background model for 446,255 bp. Use segment r for 0 bp 2025-01-31 10:03:39,708 DEBUG chr13:73936751-78159751: Successfully fit background model for 3,730,580 bp. Use segment r for 31,266 bp 2025-01-31 10:03:39,722 DEBUG chr13:78159751-78210751: Successfully fit background model for 50,897 bp. Use segment r for 0 bp 2025-01-31 10:03:39,768 DEBUG chr12:55383251-59967751: Successfully fit background model for 4,169,949 bp. Use segment r for 0 bp 2025-01-31 10:03:39,776 DEBUG chr15:3050500-5112751: Successfully fit background model for 1,756,628 bp. Use segment r for 0 bp 2025-01-31 10:03:39,975 DEBUG chr13:78210751-80881751: Successfully fit background model for 2,398,777 bp. Use segment r for 0 bp 2025-01-31 10:03:39,988 DEBUG chr13:80881751-80942751: Successfully fit background model for 60,686 bp. Use segment r for 0 bp 2025-01-31 10:03:40,058 DEBUG chr13:80942751-81625501: Successfully fit background model for 641,198 bp. Use segment r for 0 bp 2025-01-31 10:03:40,061 DEBUG chr12:59967751-63417251: Successfully fit background model for 3,030,832 bp. Use segment r for 0 bp 2025-01-31 10:03:40,076 DEBUG chr13:81625501-81784251: Successfully fit background model for 148,907 bp. Use segment r for 0 bp 2025-01-31 10:03:40,138 DEBUG chr15:5112751-9015251: Successfully fit background model for 3,584,131 bp. Use segment r for 0 bp 2025-01-31 10:03:40,154 DEBUG chr15:9015251-9096751: Successfully fit background model for 41,150 bp. Use segment r for 0 bp 2025-01-31 10:03:40,257 DEBUG chr13:81784251-83687001: Successfully fit background model for 1,750,163 bp. Use segment r for 0 bp 2025-01-31 10:03:40,268 DEBUG chr13:83687001-83739251: Successfully fit background model for 45,239 bp. Use segment r for 0 bp 2025-01-31 10:03:40,571 DEBUG chr15:9096751-13539751: Successfully fit background model for 4,141,847 bp. Use segment r for 0 bp 2025-01-31 10:03:40,574 DEBUG chr12:63417251-69119251: Successfully fit background model for 5,129,263 bp. Use segment r for 0 bp 2025-01-31 10:03:40,866 DEBUG chr12:69119251-72526751: Successfully fit background model for 3,261,923 bp. Use segment r for 0 bp 2025-01-31 10:03:40,923 DEBUG chr13:83739251-90897751: Successfully fit background model for 6,396,290 bp. Use segment r for 0 bp 2025-01-31 10:03:41,139 DEBUG chr13:90897751-93302751: Successfully fit background model for 2,215,625 bp. Use segment r for 0 bp 2025-01-31 10:03:41,173 DEBUG chr12:72526751-76180751: Successfully fit background model for 3,471,329 bp. Use segment r for 0 bp 2025-01-31 10:03:41,235 DEBUG chr12:76180751-76763751: Successfully fit background model for 543,196 bp. Use segment r for 0 bp 2025-01-31 10:03:41,415 DEBUG chr12:76763751-78859251: Successfully fit background model for 1,944,642 bp. Use segment r for 0 bp 2025-01-31 10:03:41,475 DEBUG chr13:93302751-96906751: Successfully fit background model for 3,445,110 bp. Use segment r for 0 bp 2025-01-31 10:03:41,798 DEBUG chr13:96906751-100650251: Successfully fit background model for 3,511,271 bp. Use segment r for 0 bp 2025-01-31 10:03:41,827 DEBUG chr12:78859251-83307751: Successfully fit background model for 4,206,662 bp. Use segment r for 0 bp 2025-01-31 10:03:41,828 DEBUG chr15:13539751-25700001: Successfully fit background model for 10,860,062 bp. Use segment r for 0 bp 2025-01-31 10:03:41,984 DEBUG chr15:25700001-27310751: Successfully fit background model for 1,498,676 bp. Use segment r for 0 bp 2025-01-31 10:03:42,013 DEBUG chr15:27310751-27535251: Successfully fit background model for 208,148 bp. Use segment r for 0 bp 2025-01-31 10:03:42,159 DEBUG chr12:83307751-87262751: Successfully fit background model for 3,855,992 bp. Use segment r for 0 bp 2025-01-31 10:03:42,324 DEBUG chr15:27535251-31281251: Successfully fit background model for 3,418,527 bp. Use segment r for 0 bp 2025-01-31 10:03:42,619 DEBUG chr12:87262751-92516501: Successfully fit background model for 4,478,921 bp. Use segment r for 0 bp 2025-01-31 10:03:42,718 DEBUG chr15:31281251-35913251: Successfully fit background model for 4,169,108 bp. Use segment r for 0 bp 2025-01-31 10:03:42,943 DEBUG chr15:35913251-38517751: Successfully fit background model for 2,474,519 bp. Use segment r for 0 bp 2025-01-31 10:03:42,992 DEBUG chr13:100650251-111683001: Successfully fit background model for 10,256,896 bp. Use segment r for 0 bp 2025-01-31 10:03:43,032 DEBUG chr12:92516501-97285251: Successfully fit background model for 4,289,293 bp. Use segment r for 0 bp 2025-01-31 10:03:43,097 DEBUG chr13:111683001-112742251: Successfully fit background model for 1,022,942 bp. Use segment r for 0 bp 2025-01-31 10:03:43,196 DEBUG chr12:97285251-99204251: Successfully fit background model for 1,772,473 bp. Use segment r for 0 bp 2025-01-31 10:03:43,307 DEBUG chr13:112742251-115172251: Successfully fit background model for 2,302,598 bp. Use segment r for 0 bp 2025-01-31 10:03:43,498 DEBUG chr12:99204251-102781251: Successfully fit background model for 3,365,031 bp. Use segment r for 0 bp 2025-01-31 10:03:43,527 DEBUG chr15:38517751-45072751: Successfully fit background model for 5,882,804 bp. Use segment r for 0 bp 2025-01-31 10:03:43,680 DEBUG chr13:115172251-119427251: Successfully fit background model for 3,894,294 bp. Use segment r for 0 bp 2025-01-31 10:03:43,683 DEBUG chr12:102781251-104933251: Successfully fit background model for 1,999,903 bp. Use segment r for 0 bp 2025-01-31 10:03:43,703 DEBUG chr12:104933251-105051251: Successfully fit background model for 115,259 bp. Use segment r for 0 bp 2025-01-31 10:03:43,774 DEBUG chr13:119427251-120421639: Successfully fit background model for 402,446 bp. Use segment r for 0 bp 2025-01-31 10:03:43,936 DEBUG chr15:45072751-49956251: Successfully fit background model for 4,383,729 bp. Use segment r for 0 bp 2025-01-31 10:03:44,194 DEBUG chr12:105051251-110397751: Successfully fit background model for 5,166,785 bp. Use segment r for 0 bp 2025-01-31 10:03:44,425 DEBUG chr12:110397751-113010751: Successfully fit background model for 2,541,314 bp. Use segment r for 0 bp 2025-01-31 10:03:44,648 DEBUG chr15:49956251-57688251: Successfully fit background model for 7,050,817 bp. Use segment r for 0 bp 2025-01-31 10:03:44,868 DEBUG chr15:57688251-60174001: Successfully fit background model for 2,388,607 bp. Use segment r for 0 bp 2025-01-31 10:03:45,077 DEBUG chr12:113010751-120129022: Successfully fit background model for 6,181,285 bp. Use segment r for 0 bp 2025-01-31 10:03:45,115 DEBUG chr15:60174001-63058751: Successfully fit background model for 2,637,093 bp. Use segment r for 0 bp 2025-01-31 10:03:45,521 DEBUG chr15:63058751-67526751: Successfully fit background model for 4,047,465 bp. Use segment r for 0 bp 2025-01-31 10:03:46,022 DEBUG chr15:67526751-73044251: Successfully fit background model for 5,094,247 bp. Use segment r for 0 bp 2025-01-31 10:03:46,285 DEBUG chr15:73044251-75654751: Successfully fit background model for 2,437,750 bp. Use segment r for 0 bp 2025-01-31 10:03:46,916 DEBUG chr15:75654751-82382251: Successfully fit background model for 6,440,332 bp. Use segment r for 0 bp 2025-01-31 10:03:47,201 DEBUG chr15:82382251-85675251: Successfully fit background model for 3,133,962 bp. Use segment r for 0 bp 2025-01-31 10:03:47,472 DEBUG chr15:85675251-88711751: Successfully fit background model for 2,954,644 bp. Use segment r for 0 bp 2025-01-31 10:03:47,536 DEBUG chr15:88711751-89314251: Successfully fit background model for 576,202 bp. Use segment r for 0 bp 2025-01-31 10:03:48,659 DEBUG chr15:89314251-98504251: Successfully fit background model for 8,679,602 bp. Use segment r for 0 bp 2025-01-31 10:03:48,725 DEBUG chr15:98504251-99094501: Successfully fit background model for 572,421 bp. Use segment r for 0 bp 2025-01-31 10:03:49,137 DEBUG chr15:99094501-103384751: Successfully fit background model for 4,154,430 bp. Use segment r for 0 bp 2025-01-31 10:03:49,204 DEBUG chr15:103384751-104043685: Successfully fit background model for 412,311 bp. Use segment r for 0 bp 2025-01-31 10:03:51,425 DEBUG chr16:3017000-5589251: Successfully fit background model for 2,054,695 bp. Use segment r for 0 bp 2025-01-31 10:03:51,826 DEBUG chr16:5589251-8469251: Successfully fit background model for 2,730,806 bp. Use segment r for 0 bp 2025-01-31 10:03:51,934 DEBUG chr16:8469251-9189001: Successfully fit background model for 690,789 bp. Use segment r for 0 bp 2025-01-31 10:03:52,067 DEBUG chr16:9189001-10410251: Successfully fit background model for 1,152,427 bp. Use segment r for 0 bp 2025-01-31 10:03:52,469 DEBUG chr16:10410251-14572501: Successfully fit background model for 3,934,055 bp. Use segment r for 0 bp 2025-01-31 10:03:52,692 DEBUG chr16:14572501-17109751: Successfully fit background model for 2,222,086 bp. Use segment r for 0 bp 2025-01-31 10:03:52,877 DEBUG chr16:17109751-18973751: Successfully fit background model for 1,798,629 bp. Use segment r for 0 bp 2025-01-31 10:03:52,958 DEBUG chr16:18973751-19751751: Successfully fit background model for 609,842 bp. Use segment r for 0 bp 2025-01-31 10:03:53,303 DEBUG chr16:19751751-23374251: Successfully fit background model for 3,399,784 bp. Use segment r for 0 bp 2025-01-31 10:03:53,780 DEBUG chr16:23374251-28896251: Successfully fit background model for 5,178,563 bp. Use segment r for 0 bp 2025-01-31 10:03:54,929 DEBUG chr16:28896251-39013251: Successfully fit background model for 9,665,322 bp. Use segment r for 0 bp 2025-01-31 10:03:56,162 DEBUG chr16:39013251-49764251: Successfully fit background model for 9,848,634 bp. Use segment r for 0 bp 2025-01-31 10:03:56,276 DEBUG chr16:49764251-50919751: Successfully fit background model for 1,110,225 bp. Use segment r for 0 bp 2025-01-31 10:03:56,689 DEBUG chr16:50919751-55817751: Successfully fit background model for 4,367,884 bp. Use segment r for 0 bp 2025-01-31 10:03:56,723 DEBUG chr16:55817751-56078751: Successfully fit background model for 230,486 bp. Use segment r for 0 bp 2025-01-31 10:03:56,984 DEBUG chr16:56078751-58840251: Successfully fit background model for 2,482,490 bp. Use segment r for 0 bp 2025-01-31 10:03:57,485 DEBUG chr16:58840251-64252751: Successfully fit background model for 4,806,070 bp. Use segment r for 0 bp 2025-01-31 10:03:59,935 DEBUG chr16:64252751-87383751: Successfully fit background model for 21,016,402 bp. Use segment r for 0 bp 2025-01-31 10:04:00,203 DEBUG chr16:87383751-90029751: Successfully fit background model for 2,478,279 bp. Use segment r for 0 bp 2025-01-31 10:04:00,622 DEBUG chr16:90029751-94486751: Successfully fit background model for 4,321,419 bp. Use segment r for 0 bp 2025-01-31 10:04:00,959 DEBUG chr16:94486751-98207768: Successfully fit background model for 3,463,981 bp. Use segment r for 0 bp 2025-01-31 10:04:05,867 DEBUG chr17:3000000-15966251: Successfully fit background model for 10,934,957 bp. Use segment r for 0 bp 2025-01-31 10:04:06,032 DEBUG chr17:15966251-17617751: Successfully fit background model for 1,311,302 bp. Use segment r for 0 bp 2025-01-31 10:04:06,068 DEBUG chr17:17617751-17913251: Successfully fit background model for 276,641 bp. Use segment r for 0 bp 2025-01-31 10:04:06,319 DEBUG chr17:17913251-20626251: Successfully fit background model for 2,430,822 bp. Use segment r for 0 bp 2025-01-31 10:04:06,707 DEBUG chr17:20626251-23533251: Successfully fit background model for 2,208,271 bp. Use segment r for 1,785 bp 2025-01-31 10:04:07,338 DEBUG chr17:23533251-29391251: Successfully fit background model for 5,670,527 bp. Use segment r for 0 bp 2025-01-31 10:04:07,611 DEBUG chr17:29391251-32552751: Successfully fit background model for 3,080,081 bp. Use segment r for 0 bp 2025-01-31 10:04:07,724 DEBUG chr17:32552751-33779251: Successfully fit background model for 1,030,963 bp. Use segment r for 0 bp 2025-01-31 10:04:07,779 DEBUG chr17:33779251-34135751: Successfully fit background model for 338,077 bp. Use segment r for 0 bp 2025-01-31 10:04:07,947 DEBUG chr17:34135751-35819001: Successfully fit background model for 1,524,101 bp. Use segment r for 0 bp 2025-01-31 10:04:07,968 DEBUG chr17:35819001-36003251: Successfully fit background model for 174,139 bp. Use segment r for 0 bp 2025-01-31 10:04:08,060 DEBUG chr17:36003251-37088751: Successfully fit background model for 938,987 bp. Use segment r for 0 bp 2025-01-31 10:04:08,836 DEBUG chr17:37088751-44194751: Successfully fit background model for 6,200,548 bp. Use segment r for 0 bp 2025-01-31 10:04:08,960 DEBUG chr17:44194751-45529751: Successfully fit background model for 1,287,042 bp. Use segment r for 0 bp 2025-01-31 10:04:09,244 DEBUG chr17:45529751-48651751: Successfully fit background model for 3,022,434 bp. Use segment r for 0 bp 2025-01-31 10:04:10,193 DEBUG chr17:48651751-55944251: Successfully fit background model for 6,655,446 bp. Use segment r for 0 bp 2025-01-31 10:04:10,386 DEBUG chr17:55944251-57357251: Successfully fit background model for 1,383,901 bp. Use segment r for 0 bp 2025-01-31 10:04:10,989 DEBUG chr17:57357251-61824251: Successfully fit background model for 3,991,725 bp. Use segment r for 0 bp 2025-01-31 10:04:13,697 DEBUG chr17:61824251-76021251: Successfully fit background model for 13,334,167 bp. Use segment r for 0 bp 2025-01-31 10:04:13,858 DEBUG chr17:76021251-77567751: Successfully fit background model for 1,418,880 bp. Use segment r for 0 bp 2025-01-31 10:04:15,079 DEBUG chr17:77567751-89122251: Successfully fit background model for 10,980,984 bp. Use segment r for 0 bp 2025-01-31 10:04:15,616 DEBUG chr17:89122251-94987271: Successfully fit background model for 5,208,116 bp. Use segment r for 0 bp 2025-01-31 10:04:45,512 DEBUG chr18:3000500-17249251: Successfully fit background model for 12,950,722 bp. Use segment r for 0 bp 2025-01-31 10:04:45,712 DEBUG chr18:17249251-19088251: Successfully fit background model for 1,628,468 bp. Use segment r for 0 bp 2025-01-31 10:04:46,748 DEBUG chr19:3080000-5456251: Successfully fit background model for 2,243,774 bp. Use segment r for 0 bp 2025-01-31 10:04:46,937 DEBUG chr19:5456251-7496501: Successfully fit background model for 1,870,348 bp. Use segment r for 0 bp 2025-01-31 10:04:47,053 DEBUG chr19:7496501-8695251: Successfully fit background model for 953,138 bp. Use segment r for 0 bp 2025-01-31 10:04:47,100 DEBUG chr19:8695251-9136751: Successfully fit background model for 429,086 bp. Use segment r for 0 bp 2025-01-31 10:04:47,317 DEBUG chr19:9136751-10996751: Successfully fit background model for 1,517,403 bp. Use segment r for 0 bp 2025-01-31 10:04:47,499 DEBUG chr19:10996751-12825251: Successfully fit background model for 1,651,491 bp. Use segment r for 0 bp 2025-01-31 10:04:47,549 DEBUG chr18:19088251-34217751: Successfully fit background model for 13,953,840 bp. Use segment r for 0 bp 2025-01-31 10:04:47,754 DEBUG chr19:12825251-15530751: Successfully fit background model for 2,455,267 bp. Use segment r for 0 bp 2025-01-31 10:04:47,807 DEBUG chr18:34217751-36804251: Successfully fit background model for 2,527,153 bp. Use segment r for 0 bp 2025-01-31 10:04:47,913 DEBUG chr18:36804251-37800251: Successfully fit background model for 864,867 bp. Use segment r for 0 bp 2025-01-31 10:04:47,932 DEBUG chr19:15530751-17466251: Successfully fit background model for 1,854,937 bp. Use segment r for 0 bp 2025-01-31 10:04:47,972 DEBUG chr18:37800251-38364751: Successfully fit background model for 555,270 bp. Use segment r for 0 bp 2025-01-31 10:04:48,540 DEBUG chr19:17466251-22848751: Successfully fit background model for 5,006,269 bp. Use segment r for 0 bp 2025-01-31 10:04:48,740 DEBUG chr19:22848751-24929251: Successfully fit background model for 2,012,026 bp. Use segment r for 0 bp 2025-01-31 10:04:49,101 DEBUG chr19:24929251-28382251: Successfully fit background model for 3,283,765 bp. Use segment r for 0 bp 2025-01-31 10:04:49,586 DEBUG chr19:28382251-33264751: Successfully fit background model for 4,674,444 bp. Use segment r for 0 bp 2025-01-31 10:04:49,800 DEBUG chr19:33264751-35617751: Successfully fit background model for 2,061,430 bp. Use segment r for 0 bp 2025-01-31 10:04:50,106 DEBUG chr19:35617751-39046251: Successfully fit background model for 3,281,826 bp. Use segment r for 0 bp 2025-01-31 10:04:50,192 DEBUG chr19:39046251-39885751: Successfully fit background model for 602,523 bp. Use segment r for 0 bp 2025-01-31 10:04:50,380 DEBUG chr19:39885751-41741251: Successfully fit background model for 1,742,954 bp. Use segment r for 0 bp 2025-01-31 10:04:50,886 DEBUG chr19:41741251-46827251: Successfully fit background model for 4,914,860 bp. Use segment r for 0 bp 2025-01-31 10:04:50,911 DEBUG chr18:38364751-60475251: Successfully fit background model for 20,486,142 bp. Use segment r for 0 bp 2025-01-31 10:04:51,049 DEBUG chr18:60475251-61620751: Successfully fit background model for 1,122,264 bp. Use segment r for 0 bp 2025-01-31 10:04:51,111 DEBUG chr19:46827251-49283751: Successfully fit background model for 2,354,075 bp. Use segment r for 0 bp 2025-01-31 10:04:51,369 DEBUG chr19:49283751-52185751: Successfully fit background model for 2,670,572 bp. Use segment r for 0 bp 2025-01-31 10:04:51,580 DEBUG chr18:61620751-67190751: Successfully fit background model for 5,322,536 bp. Use segment r for 0 bp 2025-01-31 10:04:51,637 DEBUG chr18:67190751-67727251: Successfully fit background model for 525,625 bp. Use segment r for 0 bp 2025-01-31 10:04:51,979 DEBUG chr18:67727251-71367251: Successfully fit background model for 3,395,824 bp. Use segment r for 0 bp 2025-01-31 10:04:52,184 DEBUG chr18:71367251-73700751: Successfully fit background model for 2,157,338 bp. Use segment r for 0 bp 2025-01-31 10:04:52,257 DEBUG chr19:52185751-61431566: Successfully fit background model for 8,766,549 bp. Use segment r for 0 bp 2025-01-31 10:04:52,576 DEBUG chr18:73700751-78025751: Successfully fit background model for 4,065,949 bp. Use segment r for 0 bp 2025-01-31 10:04:53,309 DEBUG chr18:78025751-84846251: Successfully fit background model for 6,440,140 bp. Use segment r for 0 bp 2025-01-31 10:04:53,813 DEBUG chr18:84846251-90702639: Successfully fit background model for 4,984,047 bp. Use segment r for 0 bp 2025-01-31 10:05:58,135 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:05:58,136 INFO Calculating per-bp p-values 2025-01-31 10:05:58,137 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:05:58,187 DEBUG chr1: Calculating p-values 2025-01-31 10:05:58,190 DEBUG chr4: Calculating p-values 2025-01-31 10:05:58,191 DEBUG chr2: Calculating p-values 2025-01-31 10:05:58,192 DEBUG chrX: Calculating p-values 2025-01-31 10:05:58,192 DEBUG chr3: Calculating p-values 2025-01-31 10:05:58,193 DEBUG chr5: Calculating p-values 2025-01-31 10:06:30,529 DEBUG Saving p-values for chrX 2025-01-31 10:06:35,741 DEBUG Saving p-values for chr3 2025-01-31 10:06:38,637 DEBUG Saving p-values for chr5 2025-01-31 10:06:40,991 DEBUG Saving p-values for chr4 2025-01-31 10:06:47,834 DEBUG Saving p-values for chr2 2025-01-31 10:06:56,574 DEBUG Saving p-values for chr1 2025-01-31 10:07:00,233 DEBUG chr6: Calculating p-values 2025-01-31 10:07:05,637 DEBUG chr7: Calculating p-values 2025-01-31 10:07:07,759 DEBUG chr10: Calculating p-values 2025-01-31 10:07:20,669 DEBUG chr8: Calculating p-values 2025-01-31 10:07:21,683 DEBUG chr14: Calculating p-values 2025-01-31 10:07:31,751 DEBUG Saving p-values for chr6 2025-01-31 10:07:34,050 DEBUG chr9: Calculating p-values 2025-01-31 10:07:36,200 DEBUG Saving p-values for chr10 2025-01-31 10:07:42,207 DEBUG Saving p-values for chr7 2025-01-31 10:07:45,136 DEBUG Saving p-values for chr14 2025-01-31 10:07:53,300 DEBUG Saving p-values for chr8 2025-01-31 10:07:59,414 DEBUG chr11: Calculating p-values 2025-01-31 10:08:00,279 DEBUG chr13: Calculating p-values 2025-01-31 10:08:07,064 DEBUG chr12: Calculating p-values 2025-01-31 10:08:07,353 DEBUG chr15: Calculating p-values 2025-01-31 10:08:08,727 DEBUG Saving p-values for chr9 2025-01-31 10:08:20,601 DEBUG chr16: Calculating p-values 2025-01-31 10:08:29,967 DEBUG chr17: Calculating p-values 2025-01-31 10:08:31,151 DEBUG Saving p-values for chr12 2025-01-31 10:08:31,617 DEBUG Saving p-values for chr13 2025-01-31 10:08:36,019 DEBUG Saving p-values for chr11 2025-01-31 10:08:38,855 DEBUG Saving p-values for chr15 2025-01-31 10:08:43,793 DEBUG Saving p-values for chr16 2025-01-31 10:08:50,598 DEBUG chrY: Calculating p-values 2025-01-31 10:08:53,282 DEBUG chr18: Calculating p-values 2025-01-31 10:08:54,039 DEBUG Saving p-values for chr17 2025-01-31 10:08:54,244 DEBUG chr19: Calculating p-values 2025-01-31 10:09:09,784 DEBUG Saving p-values for chr19 2025-01-31 10:09:09,999 DEBUG Saving p-values for chr18 2025-01-31 10:09:26,337 DEBUG Results of calc_pvals emitted. 2025-01-31 10:09:26,337 INFO Converting threshold values to bigwig 2025-01-31 10:09:26,338 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:09:43,412 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:10:16,234 INFO Converting background quantile values to bigwig 2025-01-31 10:10:16,234 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:10:53,608 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:11:22,938 INFO Calculating per-bp FDRs 2025-01-31 10:11:22,940 DEBUG AG81964: Extracting raw P-values 2025-01-31 10:12:02,533 DEBUG AG81964: Computing FDR 2025-01-31 10:12:18,250 DEBUG AG81964: Saving FDRs to parquet 2025-01-31 10:13:21,849 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:13:21,852 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:13:21,852 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:13:25,071 DEBUG chr5: Calling hotspots 2025-01-31 10:13:25,373 DEBUG chrX: Calling hotspots 2025-01-31 10:13:25,457 DEBUG chr3: Calling hotspots 2025-01-31 10:13:25,500 DEBUG chr4: Calling hotspots 2025-01-31 10:13:25,821 DEBUG chr2: Calling hotspots 2025-01-31 10:13:25,874 DEBUG chr1: Calling hotspots 2025-01-31 10:13:28,658 DEBUG chr5: 4521 hotspots called 2025-01-31 10:13:29,141 DEBUG chr3: 3584 hotspots called 2025-01-31 10:13:29,248 DEBUG chr4: 4631 hotspots called 2025-01-31 10:13:29,317 DEBUG chrX: 2297 hotspots called 2025-01-31 10:13:30,242 DEBUG chr2: 5569 hotspots called 2025-01-31 10:13:30,665 DEBUG chr1: 5086 hotspots called 2025-01-31 10:13:31,649 DEBUG chr6: Calling hotspots 2025-01-31 10:13:31,708 DEBUG chr10: Calling hotspots 2025-01-31 10:13:31,947 DEBUG chr8: Calling hotspots 2025-01-31 10:13:32,203 DEBUG chr7: Calling hotspots 2025-01-31 10:13:32,750 DEBUG chr14: Calling hotspots 2025-01-31 10:13:32,888 DEBUG chr9: Calling hotspots 2025-01-31 10:13:35,047 DEBUG chr8: 3496 hotspots called 2025-01-31 10:13:35,119 DEBUG chr10: 3491 hotspots called 2025-01-31 10:13:35,351 DEBUG chr6: 3599 hotspots called 2025-01-31 10:13:35,746 DEBUG chr14: 2401 hotspots called 2025-01-31 10:13:35,806 DEBUG chr7: 4446 hotspots called 2025-01-31 10:13:36,168 DEBUG chr9: 3941 hotspots called 2025-01-31 10:13:37,480 DEBUG chr11: Calling hotspots 2025-01-31 10:13:37,613 DEBUG chr12: Calling hotspots 2025-01-31 10:13:37,627 DEBUG chr13: Calling hotspots 2025-01-31 10:13:37,785 DEBUG chr15: Calling hotspots 2025-01-31 10:13:37,856 DEBUG chr16: Calling hotspots 2025-01-31 10:13:38,095 DEBUG chr17: Calling hotspots 2025-01-31 10:13:41,487 DEBUG chr15: 3086 hotspots called 2025-01-31 10:13:41,523 DEBUG chr16: 2405 hotspots called 2025-01-31 10:13:41,629 DEBUG chr11: 5376 hotspots called 2025-01-31 10:13:41,779 DEBUG chr17: 3009 hotspots called 2025-01-31 10:13:41,959 DEBUG chr13: 3508 hotspots called 2025-01-31 10:13:41,961 DEBUG chr12: 2755 hotspots called 2025-01-31 10:13:42,393 DEBUG chr19: Calling hotspots 2025-01-31 10:13:42,650 DEBUG chr18: Calling hotspots 2025-01-31 10:13:44,819 DEBUG chr19: 2329 hotspots called 2025-01-31 10:13:45,865 DEBUG chr18: 1962 hotspots called 2025-01-31 10:13:46,140 DEBUG Results of call_hotspots emitted. 2025-01-31 10:13:46,180 INFO There are 71492 hotspots called at FDR=0.05 2025-01-31 10:13:49,534 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:13:49,534 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:13:58,159 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:13:58,219 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:13:58,846 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:13:59,402 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:14:00,053 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:14:00,470 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:14:04,891 DEBUG chr4: 5500 peaks called 2025-01-31 10:14:04,967 DEBUG chr5: 5472 peaks called 2025-01-31 10:14:05,248 DEBUG chr3: 4354 peaks called 2025-01-31 10:14:05,897 DEBUG chrX: 2664 peaks called 2025-01-31 10:14:06,451 DEBUG chr2: 6717 peaks called 2025-01-31 10:14:08,319 DEBUG chr1: 6020 peaks called 2025-01-31 10:14:12,338 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:14:12,697 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:14:12,743 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:14:12,779 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:14:12,913 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:14:14,293 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:14:17,360 DEBUG chr14: 2828 peaks called 2025-01-31 10:14:17,361 DEBUG chr10: 4228 peaks called 2025-01-31 10:14:17,618 DEBUG chr8: 4271 peaks called 2025-01-31 10:14:18,228 DEBUG chr7: 5510 peaks called 2025-01-31 10:14:18,444 DEBUG chr6: 4328 peaks called 2025-01-31 10:14:18,949 DEBUG chr9: 4751 peaks called 2025-01-31 10:14:23,031 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:14:23,250 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:14:23,349 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:14:23,360 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:14:23,533 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:14:23,725 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:14:27,267 DEBUG chr16: 2857 peaks called 2025-01-31 10:14:27,467 DEBUG chr17: 3792 peaks called 2025-01-31 10:14:27,604 DEBUG chr13: 4298 peaks called 2025-01-31 10:14:27,663 DEBUG chr15: 3734 peaks called 2025-01-31 10:14:27,975 DEBUG chr12: 3256 peaks called 2025-01-31 10:14:28,055 DEBUG chr11: 6770 peaks called 2025-01-31 10:14:29,521 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:14:29,835 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:14:31,213 DEBUG chr19: 2956 peaks called 2025-01-31 10:14:32,453 DEBUG chr18: 2312 peaks called 2025-01-31 10:14:32,803 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:14:32,838 INFO There are 86618 peaks called at FDR=0.05 2025-01-31 10:14:34,277 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:14:34,277 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:14:37,999 DEBUG chr5: Calling hotspots 2025-01-31 10:14:38,058 DEBUG chr3: Calling hotspots 2025-01-31 10:14:38,204 DEBUG chrX: Calling hotspots 2025-01-31 10:14:38,288 DEBUG chr4: Calling hotspots 2025-01-31 10:14:38,704 DEBUG chr2: Calling hotspots 2025-01-31 10:14:38,706 DEBUG chr1: Calling hotspots 2025-01-31 10:14:41,824 DEBUG chr5: 3652 hotspots called 2025-01-31 10:14:41,916 DEBUG chr3: 2871 hotspots called 2025-01-31 10:14:42,095 DEBUG chr4: 3697 hotspots called 2025-01-31 10:14:42,479 DEBUG chrX: 1725 hotspots called 2025-01-31 10:14:43,391 DEBUG chr1: 3919 hotspots called 2025-01-31 10:14:43,418 DEBUG chr2: 4494 hotspots called 2025-01-31 10:14:44,513 DEBUG chr10: Calling hotspots 2025-01-31 10:14:44,667 DEBUG chr7: Calling hotspots 2025-01-31 10:14:44,864 DEBUG chr6: Calling hotspots 2025-01-31 10:14:44,914 DEBUG chr8: Calling hotspots 2025-01-31 10:14:45,700 DEBUG chr14: Calling hotspots 2025-01-31 10:14:45,713 DEBUG chr9: Calling hotspots 2025-01-31 10:14:47,512 DEBUG chr10: 2787 hotspots called 2025-01-31 10:14:48,286 DEBUG chr8: 2809 hotspots called 2025-01-31 10:14:48,390 DEBUG chr7: 3682 hotspots called 2025-01-31 10:14:48,639 DEBUG chr6: 2840 hotspots called 2025-01-31 10:14:48,719 DEBUG chr9: 3160 hotspots called 2025-01-31 10:14:49,017 DEBUG chr14: 1814 hotspots called 2025-01-31 10:14:49,710 DEBUG chr11: Calling hotspots 2025-01-31 10:14:50,642 DEBUG chr17: Calling hotspots 2025-01-31 10:14:50,652 DEBUG chr16: Calling hotspots 2025-01-31 10:14:50,664 DEBUG chr13: Calling hotspots 2025-01-31 10:14:50,688 DEBUG chr15: Calling hotspots 2025-01-31 10:14:50,758 DEBUG chr12: Calling hotspots 2025-01-31 10:14:54,929 DEBUG chr11: 4459 hotspots called 2025-01-31 10:14:55,051 DEBUG chr17: 2512 hotspots called 2025-01-31 10:14:55,244 DEBUG chr16: 1859 hotspots called 2025-01-31 10:14:55,401 DEBUG chr15: 2449 hotspots called 2025-01-31 10:14:56,096 DEBUG chr19: Calling hotspots 2025-01-31 10:14:56,113 DEBUG chr13: 2783 hotspots called 2025-01-31 10:14:56,200 DEBUG chr12: 2129 hotspots called 2025-01-31 10:14:56,301 DEBUG chr18: Calling hotspots 2025-01-31 10:14:58,560 DEBUG chr19: 1930 hotspots called 2025-01-31 10:14:59,793 DEBUG chr18: 1503 hotspots called 2025-01-31 10:15:00,090 DEBUG Results of call_hotspots emitted. 2025-01-31 10:15:00,129 INFO There are 57074 hotspots called at FDR=0.01 2025-01-31 10:15:02,925 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:15:02,925 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:15:11,186 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:15:11,501 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:15:11,839 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:15:12,550 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:15:13,354 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:15:14,285 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:15:18,235 DEBUG chr5: 4486 peaks called 2025-01-31 10:15:18,638 DEBUG chr4: 4452 peaks called 2025-01-31 10:15:19,004 DEBUG chr3: 3558 peaks called 2025-01-31 10:15:19,500 DEBUG chrX: 2053 peaks called 2025-01-31 10:15:20,819 DEBUG chr2: 5521 peaks called 2025-01-31 10:15:21,083 DEBUG chr1: 4764 peaks called 2025-01-31 10:15:25,673 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:15:25,983 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:15:26,161 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:15:26,347 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:15:27,686 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:15:28,486 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:15:31,611 DEBUG chr10: 3422 peaks called 2025-01-31 10:15:31,870 DEBUG chr8: 3494 peaks called 2025-01-31 10:15:31,874 DEBUG chr6: 3479 peaks called 2025-01-31 10:15:32,445 DEBUG chr7: 4642 peaks called 2025-01-31 10:15:32,819 DEBUG chr14: 2207 peaks called 2025-01-31 10:15:33,807 DEBUG chr9: 3914 peaks called 2025-01-31 10:15:37,162 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:15:37,753 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:15:37,934 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:15:38,082 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:15:38,127 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:15:38,533 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:15:43,023 DEBUG chr15: 3044 peaks called 2025-01-31 10:15:43,161 DEBUG chr16: 2263 peaks called 2025-01-31 10:15:43,310 DEBUG chr17: 3163 peaks called 2025-01-31 10:15:43,668 DEBUG chr11: 5667 peaks called 2025-01-31 10:15:44,235 DEBUG chr13: 3492 peaks called 2025-01-31 10:15:44,583 DEBUG chr12: 2559 peaks called 2025-01-31 10:15:45,453 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:15:46,020 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:15:48,730 DEBUG chr19: 2454 peaks called 2025-01-31 10:15:50,319 DEBUG chr18: 1817 peaks called 2025-01-31 10:15:50,785 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:15:50,820 INFO There are 70451 peaks called at FDR=0.01 2025-01-31 10:15:52,084 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:15:52,085 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:15:55,406 DEBUG chr5: Calling hotspots 2025-01-31 10:15:55,552 DEBUG chr4: Calling hotspots 2025-01-31 10:15:55,869 DEBUG chr3: Calling hotspots 2025-01-31 10:15:55,898 DEBUG chrX: Calling hotspots 2025-01-31 10:15:55,996 DEBUG chr2: Calling hotspots 2025-01-31 10:15:56,299 DEBUG chr1: Calling hotspots 2025-01-31 10:16:01,036 DEBUG chr5: 3119 hotspots called 2025-01-31 10:16:01,761 DEBUG chr4: 3117 hotspots called 2025-01-31 10:16:02,424 DEBUG chr3: 2390 hotspots called 2025-01-31 10:16:02,969 DEBUG chrX: 1413 hotspots called 2025-01-31 10:16:03,187 DEBUG chr2: 3827 hotspots called 2025-01-31 10:16:03,689 DEBUG chr6: Calling hotspots 2025-01-31 10:16:04,153 DEBUG chr1: 3250 hotspots called 2025-01-31 10:16:04,585 DEBUG chr7: Calling hotspots 2025-01-31 10:16:04,904 DEBUG chr10: Calling hotspots 2025-01-31 10:16:05,459 DEBUG chr14: Calling hotspots 2025-01-31 10:16:05,531 DEBUG chr8: Calling hotspots 2025-01-31 10:16:06,158 DEBUG chr9: Calling hotspots 2025-01-31 10:16:08,505 DEBUG chr6: 2410 hotspots called 2025-01-31 10:16:10,316 DEBUG chr14: 1514 hotspots called 2025-01-31 10:16:10,383 DEBUG chr7: 3179 hotspots called 2025-01-31 10:16:10,406 DEBUG chr10: 2354 hotspots called 2025-01-31 10:16:10,424 DEBUG chr8: 2437 hotspots called 2025-01-31 10:16:10,488 DEBUG chr9: 2673 hotspots called 2025-01-31 10:16:10,720 DEBUG chr11: Calling hotspots 2025-01-31 10:16:12,298 DEBUG chr16: Calling hotspots 2025-01-31 10:16:12,413 DEBUG chr17: Calling hotspots 2025-01-31 10:16:12,524 DEBUG chr15: Calling hotspots 2025-01-31 10:16:12,616 DEBUG chr12: Calling hotspots 2025-01-31 10:16:12,681 DEBUG chr13: Calling hotspots 2025-01-31 10:16:13,960 DEBUG chr11: 3815 hotspots called 2025-01-31 10:16:15,388 DEBUG chr18: Calling hotspots 2025-01-31 10:16:16,032 DEBUG chr17: 2113 hotspots called 2025-01-31 10:16:16,119 DEBUG chr16: 1525 hotspots called 2025-01-31 10:16:16,343 DEBUG chr15: 2077 hotspots called 2025-01-31 10:16:16,836 DEBUG chr19: Calling hotspots 2025-01-31 10:16:17,282 DEBUG chr12: 1787 hotspots called 2025-01-31 10:16:17,340 DEBUG chr13: 2341 hotspots called 2025-01-31 10:16:18,134 DEBUG chr18: 1244 hotspots called 2025-01-31 10:16:18,400 DEBUG chr19: 1645 hotspots called 2025-01-31 10:16:18,632 DEBUG Results of call_hotspots emitted. 2025-01-31 10:16:18,664 INFO There are 48230 hotspots called at FDR=0.001 2025-01-31 10:16:20,955 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:16:20,956 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:16:28,788 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:16:29,593 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:16:30,050 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:16:30,282 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:16:30,856 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:16:31,186 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:16:34,010 DEBUG chrX: 1672 peaks called 2025-01-31 10:16:34,135 DEBUG chr5: 3782 peaks called 2025-01-31 10:16:34,879 DEBUG chr4: 3713 peaks called 2025-01-31 10:16:34,895 DEBUG chr3: 2924 peaks called 2025-01-31 10:16:36,458 DEBUG chr2: 4613 peaks called 2025-01-31 10:16:36,824 DEBUG chr1: 3989 peaks called 2025-01-31 10:16:41,550 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:16:41,869 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:16:42,068 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:16:42,134 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:16:42,707 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:16:43,090 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:16:47,073 DEBUG chr10: 2859 peaks called 2025-01-31 10:16:47,874 DEBUG chr8: 2952 peaks called 2025-01-31 10:16:48,291 DEBUG chr7: 3923 peaks called 2025-01-31 10:16:48,303 DEBUG chr14: 1830 peaks called 2025-01-31 10:16:48,472 DEBUG chr9: 3270 peaks called 2025-01-31 10:16:48,533 DEBUG chr6: 2912 peaks called 2025-01-31 10:16:53,099 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:16:53,688 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:16:53,785 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:16:53,956 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:16:53,965 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:16:54,619 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:16:56,606 DEBUG chr16: 1870 peaks called 2025-01-31 10:16:56,628 DEBUG chr17: 2646 peaks called 2025-01-31 10:16:56,667 DEBUG chr11: 4768 peaks called 2025-01-31 10:16:57,090 DEBUG chr15: 2552 peaks called 2025-01-31 10:16:57,509 DEBUG chr13: 2918 peaks called 2025-01-31 10:16:58,017 DEBUG chr12: 2138 peaks called 2025-01-31 10:16:58,874 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:16:59,275 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:17:00,505 DEBUG chr19: 2062 peaks called 2025-01-31 10:17:01,667 DEBUG chr18: 1505 peaks called 2025-01-31 10:17:02,027 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:17:02,056 INFO There are 58898 peaks called at FDR=0.001 2025-01-31 10:17:03,164 INFO Saving density 2025-01-31 10:17:03,165 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:17:19,138 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:17:24,056 DEBUG Converting density to bigwig 2025-01-31 10:18:26,037 INFO Program finished