2025-01-31 09:31:53,412 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:53,426 INFO Extracting cutcounts from bam file 2025-01-31 09:33:58,475 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:33:58,530 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:33:58,534 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:33:58,535 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:33:58,535 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:33:58,535 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:33:58,536 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:33:59,785 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:34:00,020 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:34:00,096 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:34:00,136 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:34:00,475 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:34:00,836 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:34:01,110 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:34:01,318 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:34:01,483 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:34:01,518 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:34:01,543 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:34:02,198 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:34:02,488 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:34:02,544 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:34:02,577 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:34:03,335 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:34:03,336 INFO Total cutcounts = 19715266 2025-01-31 09:34:03,342 INFO Smoothing signal using MODWT 2025-01-31 09:34:03,344 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:34:03,394 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:03,396 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:03,397 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:03,398 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:03,398 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:03,409 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:17,555 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:19,403 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:20,242 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:22,602 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:55,030 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:13,200 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:14,078 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:16,225 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:29,683 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:32,420 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:40,801 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:07,069 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:07,788 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:14,306 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:14,806 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:34,542 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:41:34,542 INFO Estimating parameters of background model 2025-01-31 09:41:34,542 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:41:39,884 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:41:40,103 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:41:40,145 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:41:40,806 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:41:41,205 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:41:42,014 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:41:58,991 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:41:58,993 DEBUG chr5: Signal quantile: 0.994. signal threshold: 15. Best RMSEA: 0.019 2025-01-31 09:42:01,061 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:42:01,064 DEBUG chr3: Signal quantile: 0.995. signal threshold: 12. Best RMSEA: 0.020 2025-01-31 09:42:01,167 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:42:01,169 DEBUG chr4: Signal quantile: 0.994. signal threshold: 14. Best RMSEA: 0.018 2025-01-31 09:42:02,005 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:42:02,007 DEBUG chrX: Signal quantile: 0.994. signal threshold: 8. Best RMSEA: 0.039 2025-01-31 09:42:02,451 DEBUG chr5 total SNP count: 260056 2025-01-31 09:42:02,452 DEBUG chr5 length: 151834684 2025-01-31 09:42:02,452 DEBUG ----------------------------------------- 2025-01-31 09:42:02,452 INFO Processing SNPs in chr5 2025-01-31 09:42:02,719 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 260056)] 2025-01-31 09:42:02,901 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:04,187 DEBUG chr3 total SNP count: 273215 2025-01-31 09:42:04,187 DEBUG chr3 length: 160039680 2025-01-31 09:42:04,187 DEBUG ----------------------------------------- 2025-01-31 09:42:04,187 INFO Processing SNPs in chr3 2025-01-31 09:42:04,205 DEBUG chr4 total SNP count: 263167 2025-01-31 09:42:04,206 DEBUG chr4 length: 156508116 2025-01-31 09:42:04,206 DEBUG ----------------------------------------- 2025-01-31 09:42:04,206 INFO Processing SNPs in chr4 2025-01-31 09:42:04,466 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 273215)] 2025-01-31 09:42:04,620 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 66667), (66667, 263167)] 2025-01-31 09:42:04,658 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:04,754 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:05,021 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:42:05,023 DEBUG chr2: Signal quantile: 0.995. signal threshold: 15. Best RMSEA: 0.018 2025-01-31 09:42:05,318 DEBUG chrX total SNP count: 247199 2025-01-31 09:42:05,318 DEBUG chrX length: 171031299 2025-01-31 09:42:05,318 DEBUG ----------------------------------------- 2025-01-31 09:42:05,319 INFO Processing SNPs in chrX 2025-01-31 09:42:05,716 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 33070), (33070, 33073), (33073, 33131), (33131, 176365), (176365, 247199)] 2025-01-31 09:42:05,834 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:05,846 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:42:05,849 DEBUG chr1: Signal quantile: 0.995. signal threshold: 14. Best RMSEA: 0.018 2025-01-31 09:42:08,147 DEBUG chr2 total SNP count: 317945 2025-01-31 09:42:08,147 DEBUG chr2 length: 182113224 2025-01-31 09:42:08,147 DEBUG ----------------------------------------- 2025-01-31 09:42:08,148 INFO Processing SNPs in chr2 2025-01-31 09:42:08,664 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 310024), (310024, 317945)] 2025-01-31 09:42:08,881 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:09,198 DEBUG chr1 total SNP count: 342359 2025-01-31 09:42:09,198 DEBUG chr1 length: 195471971 2025-01-31 09:42:09,198 DEBUG ----------------------------------------- 2025-01-31 09:42:09,198 INFO Processing SNPs in chr1 2025-01-31 09:42:09,541 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 342359)] 2025-01-31 09:42:09,768 DEBUG Segmenting atomic regions: 2025-01-31 09:42:09,775 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:09,878 DEBUG Processing 1/109 atomic regions from SNP 0 to 601 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:10,598 DEBUG Processing 2/109 atomic regions from SNP 301 to 902 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:10,826 DEBUG Processing 3/109 atomic regions from SNP 602 to 1203 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:11,054 DEBUG Processing 4/109 atomic regions from SNP 903 to 1504 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:11,279 DEBUG Processing 5/109 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:11,498 DEBUG Processing 6/109 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:11,716 DEBUG Processing 7/109 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:11,938 DEBUG Processing 8/109 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:12,160 DEBUG Processing 9/109 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:12,384 DEBUG Processing 10/109 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:12,609 DEBUG Processing 11/109 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:12,687 DEBUG Segmenting atomic regions: 2025-01-31 09:42:12,809 DEBUG Processing 1/221 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:12,838 DEBUG Processing 12/109 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:13,072 DEBUG Processing 13/109 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:13,311 DEBUG Processing 14/109 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:13,556 DEBUG Processing 2/221 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:13,567 DEBUG Processing 15/109 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:13,784 DEBUG Processing 3/221 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:13,833 DEBUG Processing 16/109 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:14,013 DEBUG Processing 4/221 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:14,097 DEBUG Processing 17/109 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:14,241 DEBUG Processing 5/221 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:14,368 DEBUG Processing 18/109 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:14,477 DEBUG Processing 6/221 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:14,629 DEBUG Processing 19/109 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:14,712 DEBUG Processing 7/221 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:14,863 DEBUG Processing 20/109 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:14,943 DEBUG Processing 8/221 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:15,101 DEBUG Processing 21/109 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:15,179 DEBUG Processing 9/221 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:15,342 DEBUG Processing 22/109 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:15,466 DEBUG Processing 10/221 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:15,621 DEBUG Processing 23/109 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:15,752 DEBUG Processing 11/221 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:15,909 DEBUG Processing 24/109 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:15,984 DEBUG Processing 12/221 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:16,135 DEBUG Processing 25/109 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:16,211 DEBUG Processing 13/221 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:16,358 DEBUG Processing 26/109 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:16,436 DEBUG Processing 14/221 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:16,585 DEBUG Processing 27/109 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:16,660 DEBUG Processing 15/221 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:16,809 DEBUG Processing 28/109 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:16,881 DEBUG Processing 16/221 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:17,034 DEBUG Processing 29/109 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:17,104 DEBUG Processing 17/221 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:17,260 DEBUG Processing 30/109 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:17,329 DEBUG Processing 18/221 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:17,493 DEBUG Processing 31/109 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:17,565 DEBUG Processing 19/221 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:17,723 DEBUG Processing 32/109 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:17,795 DEBUG Processing 20/221 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:17,942 DEBUG Processing 33/109 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:18,022 DEBUG Processing 21/221 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:18,170 DEBUG Processing 34/109 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:18,251 DEBUG Processing 22/221 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:18,417 DEBUG Processing 35/109 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:18,485 DEBUG Processing 23/221 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:18,652 DEBUG Processing 36/109 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:18,713 DEBUG Processing 24/221 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:18,888 DEBUG Processing 37/109 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:18,938 DEBUG Processing 25/221 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:19,135 DEBUG Processing 38/109 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:19,174 DEBUG Processing 26/221 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:19,389 DEBUG Processing 39/109 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:19,400 DEBUG Processing 27/221 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:19,625 DEBUG Processing 28/221 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:19,640 DEBUG Processing 40/109 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:19,850 DEBUG Processing 29/221 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:19,887 DEBUG Processing 41/109 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,076 DEBUG Processing 30/221 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:20,135 DEBUG Processing 42/109 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,302 DEBUG Processing 31/221 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:20,374 DEBUG Processing 43/109 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,536 DEBUG Processing 32/221 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:20,619 DEBUG Processing 44/109 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,760 DEBUG Processing 33/221 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:20,864 DEBUG Processing 45/109 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,990 DEBUG Processing 34/221 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:21,097 DEBUG Processing 46/109 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,219 DEBUG Processing 35/221 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:21,340 DEBUG Processing 47/109 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,447 DEBUG Processing 36/221 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:21,575 DEBUG Processing 48/109 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,669 DEBUG Processing 37/221 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:21,796 DEBUG Processing 49/109 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,896 DEBUG Processing 38/221 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:22,016 DEBUG Processing 50/109 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:22,117 DEBUG Processing 39/221 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:22,234 DEBUG Processing 51/109 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:22,342 DEBUG Processing 40/221 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:22,452 DEBUG Processing 52/109 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:22,565 DEBUG Processing 41/221 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:22,671 DEBUG Processing 53/109 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:22,789 DEBUG Processing 42/221 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:22,888 DEBUG Processing 54/109 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:23,017 DEBUG Processing 43/221 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:23,112 DEBUG Processing 55/109 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:23,244 DEBUG Processing 44/221 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:23,336 DEBUG Processing 56/109 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:23,486 DEBUG Processing 45/221 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:23,556 DEBUG Processing 57/109 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:23,726 DEBUG Processing 46/221 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:23,770 DEBUG Processing 58/109 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:23,957 DEBUG Processing 47/221 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:23,987 DEBUG Processing 59/109 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:24,189 DEBUG Processing 48/221 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:24,210 DEBUG Processing 60/109 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:24,420 DEBUG Processing 49/221 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:24,434 DEBUG Processing 61/109 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:24,657 DEBUG Processing 50/221 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:24,665 DEBUG Processing 62/109 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:24,893 DEBUG Processing 51/221 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:24,895 DEBUG Processing 63/109 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:25,124 DEBUG Processing 64/109 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:25,126 DEBUG Processing 52/221 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,349 DEBUG Processing 65/109 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:25,356 DEBUG Processing 53/221 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,573 DEBUG Processing 66/109 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:25,585 DEBUG Processing 54/221 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,795 DEBUG Processing 67/109 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:25,813 DEBUG Processing 55/221 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,018 DEBUG Processing 68/109 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:26,047 DEBUG Processing 56/221 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,240 DEBUG Processing 69/109 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:26,276 DEBUG Processing 57/221 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,464 DEBUG Processing 70/109 atomic regions from SNP 20769 to 21369 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:26,505 DEBUG Processing 58/221 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,692 DEBUG Processing 71/109 atomic regions from SNP 21069 to 21669 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:26,736 DEBUG Processing 59/221 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,923 DEBUG Processing 72/109 atomic regions from SNP 21369 to 21969 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:26,971 DEBUG Processing 60/221 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:27,151 DEBUG Processing 73/109 atomic regions from SNP 21669 to 22269 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:27,199 DEBUG Processing 61/221 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:27,377 DEBUG Processing 74/109 atomic regions from SNP 21969 to 22569 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:27,429 DEBUG Processing 62/221 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:27,609 DEBUG Processing 75/109 atomic regions from SNP 22269 to 22869 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:27,663 DEBUG Processing 63/221 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:27,842 DEBUG Processing 76/109 atomic regions from SNP 22569 to 23169 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:27,893 DEBUG Processing 64/221 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,073 DEBUG Processing 77/109 atomic regions from SNP 22869 to 23469 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:28,123 DEBUG Processing 65/221 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,301 DEBUG Processing 78/109 atomic regions from SNP 23169 to 23769 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:28,353 DEBUG Processing 66/221 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,528 DEBUG Processing 79/109 atomic regions from SNP 23469 to 24069 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:28,582 DEBUG Processing 67/221 atomic regions from SNP 19866 to 20466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,756 DEBUG Processing 80/109 atomic regions from SNP 23769 to 24369 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:28,814 DEBUG Processing 68/221 atomic regions from SNP 20166 to 20766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,981 DEBUG Processing 81/109 atomic regions from SNP 24069 to 24669 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:29,048 DEBUG Processing 69/221 atomic regions from SNP 20466 to 21066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,201 DEBUG Processing 82/109 atomic regions from SNP 24369 to 24969 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:29,278 DEBUG Processing 70/221 atomic regions from SNP 20766 to 21366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,419 DEBUG Processing 83/109 atomic regions from SNP 24669 to 25269 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:29,507 DEBUG Processing 71/221 atomic regions from SNP 21066 to 21666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,639 DEBUG Processing 84/109 atomic regions from SNP 24969 to 25569 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:29,731 DEBUG Processing 72/221 atomic regions from SNP 21366 to 21966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,863 DEBUG Processing 85/109 atomic regions from SNP 25269 to 25869 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:29,955 DEBUG Processing 73/221 atomic regions from SNP 21666 to 22266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,096 DEBUG Processing 86/109 atomic regions from SNP 25569 to 26169 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:30,178 DEBUG Processing 74/221 atomic regions from SNP 21966 to 22566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,337 DEBUG Processing 87/109 atomic regions from SNP 25869 to 26469 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:30,410 DEBUG Processing 75/221 atomic regions from SNP 22266 to 22866 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,593 DEBUG Processing 88/109 atomic regions from SNP 26169 to 26769 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:30,643 DEBUG Processing 76/221 atomic regions from SNP 22566 to 23166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,840 DEBUG Processing 89/109 atomic regions from SNP 26469 to 27069 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:30,878 DEBUG Processing 77/221 atomic regions from SNP 22866 to 23466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,077 DEBUG Processing 90/109 atomic regions from SNP 26769 to 27369 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:31,110 DEBUG Processing 78/221 atomic regions from SNP 23166 to 23766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,305 DEBUG Processing 91/109 atomic regions from SNP 27069 to 27669 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:31,339 DEBUG Processing 79/221 atomic regions from SNP 23466 to 24066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,526 DEBUG Processing 92/109 atomic regions from SNP 27369 to 27969 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:31,566 DEBUG Processing 80/221 atomic regions from SNP 23766 to 24366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,746 DEBUG Processing 93/109 atomic regions from SNP 27669 to 28269 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:31,793 DEBUG Processing 81/221 atomic regions from SNP 24066 to 24666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,971 DEBUG Processing 94/109 atomic regions from SNP 27969 to 28569 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:32,020 DEBUG Processing 82/221 atomic regions from SNP 24366 to 24966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,193 DEBUG Processing 95/109 atomic regions from SNP 28269 to 28869 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:32,249 DEBUG Processing 83/221 atomic regions from SNP 24666 to 25266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,416 DEBUG Processing 96/109 atomic regions from SNP 28569 to 29169 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:32,479 DEBUG Processing 84/221 atomic regions from SNP 24966 to 25566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,637 DEBUG Processing 97/109 atomic regions from SNP 28869 to 29469 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:32,707 DEBUG Processing 85/221 atomic regions from SNP 25266 to 25866 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,855 DEBUG Processing 98/109 atomic regions from SNP 29169 to 29769 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:32,935 DEBUG Processing 86/221 atomic regions from SNP 25566 to 26166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,074 DEBUG Processing 99/109 atomic regions from SNP 29469 to 30069 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:33,158 DEBUG Processing 87/221 atomic regions from SNP 25866 to 26466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,300 DEBUG Processing 100/109 atomic regions from SNP 29769 to 30369 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:33,388 DEBUG Processing 88/221 atomic regions from SNP 26166 to 26766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,526 DEBUG Processing 101/109 atomic regions from SNP 30069 to 30669 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:33,616 DEBUG Processing 89/221 atomic regions from SNP 26466 to 27066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,746 DEBUG Processing 102/109 atomic regions from SNP 30369 to 30969 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:33,844 DEBUG Processing 90/221 atomic regions from SNP 26766 to 27366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,962 DEBUG Processing 103/109 atomic regions from SNP 30669 to 31269 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:34,013 DEBUG Segmenting atomic regions: 2025-01-31 09:42:34,075 DEBUG Processing 91/221 atomic regions from SNP 27066 to 27666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,127 DEBUG Processing 1/865 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,177 DEBUG Processing 104/109 atomic regions from SNP 30969 to 31569 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:34,308 DEBUG Processing 92/221 atomic regions from SNP 27366 to 27966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,402 DEBUG Processing 105/109 atomic regions from SNP 31269 to 31869 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:34,535 DEBUG Processing 93/221 atomic regions from SNP 27666 to 28266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,623 DEBUG Processing 106/109 atomic regions from SNP 31569 to 32169 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:34,758 DEBUG Processing 94/221 atomic regions from SNP 27966 to 28566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,844 DEBUG Processing 107/109 atomic regions from SNP 31869 to 32469 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:34,890 DEBUG Processing 2/865 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,981 DEBUG Processing 95/221 atomic regions from SNP 28266 to 28866 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,065 DEBUG Processing 108/109 atomic regions from SNP 32169 to 32769 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:35,117 DEBUG Processing 3/865 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,204 DEBUG Processing 96/221 atomic regions from SNP 28566 to 29166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,283 DEBUG Processing 109/109 atomic regions from SNP 32469 to 33069 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:35,343 DEBUG Processing 4/865 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,401 DEBUG Unique SNPs positions in subchromosome 1: 33070 2025-01-31 09:42:35,430 DEBUG Processing 97/221 atomic regions from SNP 28866 to 29466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,447 DEBUG Subchromosome time: 29.612878598971292, subchromosome SNPs: 33070 2025-01-31 09:42:35,482 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:35,569 DEBUG Processing 5/865 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,652 DEBUG Processing 98/221 atomic regions from SNP 29166 to 29766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,795 DEBUG Processing 6/865 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,874 DEBUG Processing 99/221 atomic regions from SNP 29466 to 30066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,022 DEBUG Processing 7/865 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,096 DEBUG Processing 100/221 atomic regions from SNP 29766 to 30366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,250 DEBUG Processing 8/865 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,318 DEBUG Processing 101/221 atomic regions from SNP 30066 to 30666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,478 DEBUG Processing 9/865 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,543 DEBUG Processing 102/221 atomic regions from SNP 30366 to 30966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,705 DEBUG Processing 10/865 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,767 DEBUG Processing 103/221 atomic regions from SNP 30666 to 31266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,931 DEBUG Processing 11/865 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,994 DEBUG Processing 104/221 atomic regions from SNP 30966 to 31566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,083 DEBUG Segmenting atomic regions: 2025-01-31 09:42:37,151 DEBUG Processing 12/865 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,204 DEBUG Processing 1/909 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,222 DEBUG Processing 105/221 atomic regions from SNP 31266 to 31866 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,370 DEBUG Processing 13/865 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,455 DEBUG Processing 106/221 atomic regions from SNP 31566 to 32166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,591 DEBUG Processing 14/865 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,677 DEBUG Processing 107/221 atomic regions from SNP 31866 to 32466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,820 DEBUG Processing 15/865 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,906 DEBUG Processing 108/221 atomic regions from SNP 32166 to 32766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,964 DEBUG Processing 2/909 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,042 DEBUG Processing 16/865 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,129 DEBUG Processing 109/221 atomic regions from SNP 32466 to 33066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,192 DEBUG Processing 3/909 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,264 DEBUG Processing 17/865 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,358 DEBUG Processing 110/221 atomic regions from SNP 32766 to 33366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,424 DEBUG Processing 4/909 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,493 DEBUG Processing 18/865 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,587 DEBUG Processing 111/221 atomic regions from SNP 33066 to 33666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,652 DEBUG Processing 5/909 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,722 DEBUG Processing 19/865 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,812 DEBUG Processing 112/221 atomic regions from SNP 33366 to 33966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,882 DEBUG Processing 6/909 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,952 DEBUG Processing 20/865 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,036 DEBUG Processing 113/221 atomic regions from SNP 33666 to 34266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,108 DEBUG Processing 7/909 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,181 DEBUG Processing 21/865 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,259 DEBUG Processing 114/221 atomic regions from SNP 33966 to 34566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,341 DEBUG Processing 8/909 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,412 DEBUG Processing 22/865 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,484 DEBUG Processing 115/221 atomic regions from SNP 34266 to 34866 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,570 DEBUG Processing 9/909 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,644 DEBUG Processing 23/865 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,708 DEBUG Processing 116/221 atomic regions from SNP 34566 to 35166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,802 DEBUG Processing 10/909 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,876 DEBUG Processing 24/865 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,936 DEBUG Processing 117/221 atomic regions from SNP 34866 to 35466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,030 DEBUG Processing 11/909 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,107 DEBUG Processing 25/865 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,164 DEBUG Processing 118/221 atomic regions from SNP 35166 to 35766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,262 DEBUG Processing 12/909 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,334 DEBUG Processing 26/865 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,397 DEBUG Processing 119/221 atomic regions from SNP 35466 to 36066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,493 DEBUG Processing 13/909 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,562 DEBUG Processing 27/865 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,628 DEBUG Processing 120/221 atomic regions from SNP 35766 to 36366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,730 DEBUG Processing 14/909 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,784 DEBUG Processing 28/865 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,853 DEBUG Processing 121/221 atomic regions from SNP 36066 to 36666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,965 DEBUG Processing 15/909 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,005 DEBUG Processing 29/865 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,076 DEBUG Processing 122/221 atomic regions from SNP 36366 to 36966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,204 DEBUG Processing 16/909 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,230 DEBUG Processing 30/865 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,296 DEBUG Processing 123/221 atomic regions from SNP 36666 to 37266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,441 DEBUG Processing 17/909 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,460 DEBUG Processing 31/865 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,520 DEBUG Processing 124/221 atomic regions from SNP 36966 to 37566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,684 DEBUG Processing 18/909 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,691 DEBUG Processing 32/865 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,745 DEBUG Processing 125/221 atomic regions from SNP 37266 to 37866 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,923 DEBUG Processing 19/909 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,924 DEBUG Processing 33/865 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,973 DEBUG Processing 126/221 atomic regions from SNP 37566 to 38166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,158 DEBUG Processing 34/865 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,169 DEBUG Processing 20/909 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,204 DEBUG Processing 127/221 atomic regions from SNP 37866 to 38466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,392 DEBUG Processing 35/865 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,410 DEBUG Processing 21/909 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,437 DEBUG Processing 128/221 atomic regions from SNP 38166 to 38766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,624 DEBUG Processing 36/865 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,652 DEBUG Processing 22/909 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,669 DEBUG Processing 129/221 atomic regions from SNP 38466 to 39066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,867 DEBUG Processing 37/865 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,903 DEBUG Processing 23/909 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,909 DEBUG Processing 130/221 atomic regions from SNP 38766 to 39366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,103 DEBUG Processing 38/865 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,144 DEBUG Processing 131/221 atomic regions from SNP 39066 to 39666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,150 DEBUG Processing 24/909 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,343 DEBUG Processing 39/865 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,381 DEBUG Processing 132/221 atomic regions from SNP 39366 to 39966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,397 DEBUG Processing 25/909 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,589 DEBUG Processing 40/865 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,627 DEBUG Processing 133/221 atomic regions from SNP 39666 to 40266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,681 DEBUG Processing 26/909 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,830 DEBUG Processing 41/865 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,870 DEBUG Processing 134/221 atomic regions from SNP 39966 to 40566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,928 DEBUG Processing 27/909 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,072 DEBUG Processing 42/865 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,109 DEBUG Processing 135/221 atomic regions from SNP 40266 to 40866 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,174 DEBUG Processing 28/909 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,312 DEBUG Processing 43/865 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,346 DEBUG Processing 136/221 atomic regions from SNP 40566 to 41166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,411 DEBUG Processing 29/909 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,548 DEBUG Processing 44/865 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,578 DEBUG Processing 137/221 atomic regions from SNP 40866 to 41466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,651 DEBUG Processing 30/909 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,785 DEBUG Processing 45/865 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,810 DEBUG Processing 138/221 atomic regions from SNP 41166 to 41766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,892 DEBUG Processing 31/909 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,017 DEBUG Processing 46/865 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,035 DEBUG Processing 139/221 atomic regions from SNP 41466 to 42066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,129 DEBUG Processing 32/909 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,248 DEBUG Processing 47/865 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,262 DEBUG Processing 140/221 atomic regions from SNP 41766 to 42366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,361 DEBUG Processing 33/909 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,483 DEBUG Processing 48/865 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,492 DEBUG Processing 141/221 atomic regions from SNP 42066 to 42666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,608 DEBUG Processing 34/909 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,717 DEBUG Processing 49/865 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,726 DEBUG Processing 142/221 atomic regions from SNP 42366 to 42966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,845 DEBUG Processing 35/909 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,949 DEBUG Processing 50/865 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,954 DEBUG Processing 143/221 atomic regions from SNP 42666 to 43266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,971 DEBUG Segmenting atomic regions: 2025-01-31 09:42:46,089 DEBUG Processing 36/909 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,114 DEBUG Processing 1/1032 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,185 DEBUG Processing 51/865 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,187 DEBUG Processing 144/221 atomic regions from SNP 42966 to 43566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,336 DEBUG Processing 37/909 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,424 DEBUG Processing 145/221 atomic regions from SNP 43266 to 43866 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,425 DEBUG Processing 52/865 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,585 DEBUG Processing 38/909 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,660 DEBUG Processing 146/221 atomic regions from SNP 43566 to 44166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,662 DEBUG Processing 53/865 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,822 DEBUG Processing 39/909 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,893 DEBUG Processing 147/221 atomic regions from SNP 43866 to 44466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,898 DEBUG Processing 54/865 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,929 DEBUG Processing 2/1032 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,056 DEBUG Processing 40/909 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,126 DEBUG Processing 148/221 atomic regions from SNP 44166 to 44766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,135 DEBUG Processing 55/865 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,198 DEBUG Processing 3/1032 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,289 DEBUG Processing 41/909 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,354 DEBUG Processing 149/221 atomic regions from SNP 44466 to 45066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,369 DEBUG Processing 56/865 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,461 DEBUG Processing 4/1032 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,529 DEBUG Processing 42/909 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,584 DEBUG Processing 150/221 atomic regions from SNP 44766 to 45366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,605 DEBUG Processing 57/865 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,721 DEBUG Processing 5/1032 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,768 DEBUG Processing 43/909 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,816 DEBUG Processing 151/221 atomic regions from SNP 45066 to 45666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,841 DEBUG Processing 58/865 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,984 DEBUG Processing 6/1032 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,012 DEBUG Processing 44/909 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,055 DEBUG Processing 152/221 atomic regions from SNP 45366 to 45966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,079 DEBUG Processing 59/865 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,240 DEBUG Processing 7/1032 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,251 DEBUG Processing 45/909 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,292 DEBUG Processing 153/221 atomic regions from SNP 45666 to 46266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,317 DEBUG Processing 60/865 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,496 DEBUG Processing 46/909 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,499 DEBUG Processing 8/1032 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,534 DEBUG Processing 154/221 atomic regions from SNP 45966 to 46566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,561 DEBUG Processing 61/865 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,741 DEBUG Processing 47/909 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,756 DEBUG Processing 9/1032 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,773 DEBUG Processing 155/221 atomic regions from SNP 46266 to 46866 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,804 DEBUG Processing 62/865 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,983 DEBUG Processing 48/909 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,014 DEBUG Processing 156/221 atomic regions from SNP 46566 to 47166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,015 DEBUG Processing 10/1032 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,044 DEBUG Processing 63/865 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,224 DEBUG Processing 49/909 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,259 DEBUG Processing 157/221 atomic regions from SNP 46866 to 47466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,270 DEBUG Processing 11/1032 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,286 DEBUG Processing 64/865 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,465 DEBUG Processing 50/909 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,498 DEBUG Processing 158/221 atomic regions from SNP 47166 to 47766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,529 DEBUG Processing 12/1032 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,531 DEBUG Processing 65/865 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,703 DEBUG Processing 51/909 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,734 DEBUG Processing 159/221 atomic regions from SNP 47466 to 48066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,774 DEBUG Processing 66/865 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,784 DEBUG Processing 13/1032 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,944 DEBUG Processing 52/909 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,972 DEBUG Processing 160/221 atomic regions from SNP 47766 to 48366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,016 DEBUG Processing 67/865 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,036 DEBUG Processing 14/1032 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,184 DEBUG Processing 53/909 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,209 DEBUG Processing 161/221 atomic regions from SNP 48066 to 48666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,256 DEBUG Processing 68/865 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,290 DEBUG Processing 15/1032 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,428 DEBUG Processing 54/909 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,450 DEBUG Processing 162/221 atomic regions from SNP 48366 to 48966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,495 DEBUG Processing 69/865 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,547 DEBUG Processing 16/1032 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,671 DEBUG Processing 55/909 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,688 DEBUG Processing 163/221 atomic regions from SNP 48666 to 49266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,735 DEBUG Processing 70/865 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,773 DEBUG Segmenting atomic regions: 2025-01-31 09:42:50,802 DEBUG Processing 17/1032 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,915 DEBUG Processing 56/909 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,926 DEBUG Processing 164/221 atomic regions from SNP 48966 to 49566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,927 DEBUG Processing 1/1140 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,979 DEBUG Processing 71/865 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,060 DEBUG Processing 18/1032 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,168 DEBUG Processing 57/909 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,169 DEBUG Processing 165/221 atomic regions from SNP 49266 to 49866 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,230 DEBUG Processing 72/865 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,325 DEBUG Processing 19/1032 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,408 DEBUG Processing 166/221 atomic regions from SNP 49566 to 50166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,414 DEBUG Processing 58/909 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,475 DEBUG Processing 73/865 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,592 DEBUG Processing 20/1032 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,642 DEBUG Processing 167/221 atomic regions from SNP 49866 to 50466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,657 DEBUG Processing 59/909 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,712 DEBUG Processing 74/865 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,718 DEBUG Processing 2/1140 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,860 DEBUG Processing 21/1032 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,873 DEBUG Processing 168/221 atomic regions from SNP 50166 to 50766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,900 DEBUG Processing 60/909 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,956 DEBUG Processing 75/865 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,995 DEBUG Processing 3/1140 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,105 DEBUG Processing 169/221 atomic regions from SNP 50466 to 51066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,126 DEBUG Processing 22/1032 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,143 DEBUG Processing 61/909 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,203 DEBUG Processing 76/865 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,263 DEBUG Processing 4/1140 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,341 DEBUG Processing 170/221 atomic regions from SNP 50766 to 51366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,386 DEBUG Processing 62/909 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,387 DEBUG Segmenting atomic regions: 2025-01-31 09:42:52,387 DEBUG Processing 23/1032 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,444 DEBUG Processing 77/865 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,494 DEBUG Processing 1/476 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:52,534 DEBUG Processing 5/1140 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,595 DEBUG Processing 171/221 atomic regions from SNP 51066 to 51666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,631 DEBUG Processing 63/909 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,645 DEBUG Processing 24/1032 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,685 DEBUG Processing 78/865 atomic regions from SNP 23177 to 23778 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,730 DEBUG Processing 2/476 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:52,808 DEBUG Processing 6/1140 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,846 DEBUG Processing 172/221 atomic regions from SNP 51366 to 51966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,878 DEBUG Processing 64/909 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,903 DEBUG Processing 25/1032 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,926 DEBUG Processing 79/865 atomic regions from SNP 23478 to 24079 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,955 DEBUG Processing 3/476 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:53,083 DEBUG Processing 7/1140 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,112 DEBUG Processing 173/221 atomic regions from SNP 51666 to 52266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,131 DEBUG Processing 65/909 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,161 DEBUG Processing 26/1032 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,169 DEBUG Processing 80/865 atomic regions from SNP 23779 to 24380 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,178 DEBUG Processing 4/476 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:53,357 DEBUG Processing 8/1140 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,360 DEBUG Processing 174/221 atomic regions from SNP 51966 to 52566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,382 DEBUG Processing 66/909 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,407 DEBUG Processing 5/476 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:53,411 DEBUG Processing 81/865 atomic regions from SNP 24080 to 24681 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,418 DEBUG Processing 27/1032 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,599 DEBUG Processing 175/221 atomic regions from SNP 52266 to 52866 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,626 DEBUG Processing 9/1140 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,630 DEBUG Processing 67/909 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,637 DEBUG Processing 6/476 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:53,654 DEBUG Processing 82/865 atomic regions from SNP 24381 to 24982 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,676 DEBUG Processing 28/1032 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,837 DEBUG Processing 176/221 atomic regions from SNP 52566 to 53166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,869 DEBUG Processing 7/476 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:53,897 DEBUG Processing 10/1140 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,900 DEBUG Processing 83/865 atomic regions from SNP 24682 to 25283 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,904 DEBUG Processing 68/909 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,935 DEBUG Processing 29/1032 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,077 DEBUG Processing 177/221 atomic regions from SNP 52866 to 53466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,111 DEBUG Processing 8/476 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:54,146 DEBUG Processing 84/865 atomic regions from SNP 24983 to 25584 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,157 DEBUG Processing 69/909 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,165 DEBUG Processing 11/1140 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,195 DEBUG Processing 30/1032 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,311 DEBUG Processing 178/221 atomic regions from SNP 53166 to 53766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,353 DEBUG Processing 9/476 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:54,393 DEBUG Processing 85/865 atomic regions from SNP 25284 to 25885 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,405 DEBUG Processing 70/909 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,435 DEBUG Processing 12/1140 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,456 DEBUG Processing 31/1032 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,540 DEBUG Processing 179/221 atomic regions from SNP 53466 to 54066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,607 DEBUG Processing 10/476 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:54,635 DEBUG Processing 86/865 atomic regions from SNP 25585 to 26186 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,650 DEBUG Processing 71/909 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,703 DEBUG Processing 13/1140 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,718 DEBUG Processing 32/1032 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,764 DEBUG Processing 180/221 atomic regions from SNP 53766 to 54366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,859 DEBUG Processing 11/476 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:54,875 DEBUG Processing 87/865 atomic regions from SNP 25886 to 26487 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,892 DEBUG Processing 72/909 atomic regions from SNP 21371 to 21972 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,977 DEBUG Processing 14/1140 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,983 DEBUG Processing 33/1032 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,989 DEBUG Processing 181/221 atomic regions from SNP 54066 to 54666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,107 DEBUG Processing 88/865 atomic regions from SNP 26187 to 26788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,109 DEBUG Processing 12/476 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:55,129 DEBUG Processing 73/909 atomic regions from SNP 21672 to 22273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,218 DEBUG Processing 182/221 atomic regions from SNP 54366 to 54966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,246 DEBUG Processing 34/1032 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,251 DEBUG Processing 15/1140 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,338 DEBUG Processing 89/865 atomic regions from SNP 26488 to 27089 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,342 DEBUG Processing 13/476 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:55,363 DEBUG Processing 74/909 atomic regions from SNP 21973 to 22574 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,448 DEBUG Processing 183/221 atomic regions from SNP 54666 to 55266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,509 DEBUG Processing 35/1032 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,532 DEBUG Processing 16/1140 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,565 DEBUG Processing 90/865 atomic regions from SNP 26789 to 27390 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,579 DEBUG Processing 14/476 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:55,598 DEBUG Processing 75/909 atomic regions from SNP 22274 to 22875 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,680 DEBUG Processing 184/221 atomic regions from SNP 54966 to 55566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,771 DEBUG Processing 36/1032 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,800 DEBUG Processing 91/865 atomic regions from SNP 27090 to 27691 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,806 DEBUG Processing 17/1140 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,818 DEBUG Processing 15/476 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:55,838 DEBUG Processing 76/909 atomic regions from SNP 22575 to 23176 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,911 DEBUG Processing 185/221 atomic regions from SNP 55266 to 55866 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,028 DEBUG Processing 37/1032 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,035 DEBUG Processing 92/865 atomic regions from SNP 27391 to 27992 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,048 DEBUG Processing 16/476 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:56,077 DEBUG Processing 18/1140 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,079 DEBUG Processing 77/909 atomic regions from SNP 22876 to 23477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,142 DEBUG Processing 186/221 atomic regions from SNP 55566 to 56166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,274 DEBUG Processing 93/865 atomic regions from SNP 27692 to 28293 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,285 DEBUG Processing 17/476 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:56,288 DEBUG Processing 38/1032 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,320 DEBUG Processing 78/909 atomic regions from SNP 23177 to 23778 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,349 DEBUG Processing 19/1140 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,367 DEBUG Processing 187/221 atomic regions from SNP 55866 to 56466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,515 DEBUG Processing 94/865 atomic regions from SNP 27993 to 28594 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,526 DEBUG Processing 18/476 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:56,545 DEBUG Processing 39/1032 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,561 DEBUG Processing 79/909 atomic regions from SNP 23478 to 24079 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,597 DEBUG Processing 188/221 atomic regions from SNP 56166 to 56766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,622 DEBUG Processing 20/1140 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,754 DEBUG Processing 19/476 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:56,756 DEBUG Processing 95/865 atomic regions from SNP 28294 to 28895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,803 DEBUG Processing 40/1032 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,806 DEBUG Processing 80/909 atomic regions from SNP 23779 to 24380 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,828 DEBUG Processing 189/221 atomic regions from SNP 56466 to 57066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,889 DEBUG Processing 21/1140 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,980 DEBUG Processing 20/476 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:56,992 DEBUG Processing 96/865 atomic regions from SNP 28595 to 29196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,049 DEBUG Processing 81/909 atomic regions from SNP 24080 to 24681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,061 DEBUG Processing 41/1032 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,064 DEBUG Processing 190/221 atomic regions from SNP 56766 to 57366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,156 DEBUG Processing 22/1140 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,201 DEBUG Processing 21/476 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:57,229 DEBUG Processing 97/865 atomic regions from SNP 28896 to 29497 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,295 DEBUG Processing 82/909 atomic regions from SNP 24381 to 24982 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,301 DEBUG Processing 191/221 atomic regions from SNP 57066 to 57666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,319 DEBUG Processing 42/1032 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,416 DEBUG Processing 23/1140 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,417 DEBUG Processing 22/476 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:57,464 DEBUG Processing 98/865 atomic regions from SNP 29197 to 29798 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,539 DEBUG Processing 83/909 atomic regions from SNP 24682 to 25283 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,541 DEBUG Processing 192/221 atomic regions from SNP 57366 to 57966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,576 DEBUG Processing 43/1032 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,632 DEBUG Processing 23/476 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:57,681 DEBUG Processing 24/1140 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,700 DEBUG Processing 99/865 atomic regions from SNP 29498 to 30099 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,779 DEBUG Processing 193/221 atomic regions from SNP 57666 to 58266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,784 DEBUG Processing 84/909 atomic regions from SNP 24983 to 25584 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,829 DEBUG Processing 44/1032 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,847 DEBUG Processing 24/476 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:57,930 DEBUG Processing 100/865 atomic regions from SNP 29799 to 30400 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,947 DEBUG Processing 25/1140 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,019 DEBUG Processing 194/221 atomic regions from SNP 57966 to 58566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,034 DEBUG Processing 85/909 atomic regions from SNP 25284 to 25885 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,076 DEBUG Processing 25/476 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:58,085 DEBUG Processing 45/1032 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,164 DEBUG Processing 101/865 atomic regions from SNP 30100 to 30701 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,224 DEBUG Processing 26/1140 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,250 DEBUG Processing 195/221 atomic regions from SNP 58266 to 58866 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,275 DEBUG Processing 86/909 atomic regions from SNP 25585 to 26186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,305 DEBUG Processing 26/476 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:58,336 DEBUG Processing 46/1032 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,400 DEBUG Processing 102/865 atomic regions from SNP 30401 to 31002 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,485 DEBUG Processing 196/221 atomic regions from SNP 58566 to 59166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,500 DEBUG Processing 27/1140 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,515 DEBUG Processing 87/909 atomic regions from SNP 25886 to 26487 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,529 DEBUG Processing 27/476 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:58,586 DEBUG Processing 47/1032 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,637 DEBUG Processing 103/865 atomic regions from SNP 30702 to 31303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,723 DEBUG Processing 197/221 atomic regions from SNP 58866 to 59466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,755 DEBUG Processing 28/476 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:58,756 DEBUG Processing 88/909 atomic regions from SNP 26187 to 26788 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,775 DEBUG Processing 28/1140 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,840 DEBUG Processing 48/1032 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,870 DEBUG Processing 104/865 atomic regions from SNP 31003 to 31604 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,959 DEBUG Processing 198/221 atomic regions from SNP 59166 to 59766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,977 DEBUG Processing 29/476 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:58,994 DEBUG Processing 89/909 atomic regions from SNP 26488 to 27089 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,041 DEBUG Processing 29/1140 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,096 DEBUG Processing 49/1032 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,109 DEBUG Processing 105/865 atomic regions from SNP 31304 to 31905 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,197 DEBUG Processing 199/221 atomic regions from SNP 59466 to 60066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,201 DEBUG Processing 30/476 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:59,243 DEBUG Processing 90/909 atomic regions from SNP 26789 to 27390 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,312 DEBUG Processing 30/1140 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,344 DEBUG Processing 106/865 atomic regions from SNP 31605 to 32206 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,355 DEBUG Processing 50/1032 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,431 DEBUG Processing 31/476 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:59,437 DEBUG Processing 200/221 atomic regions from SNP 59766 to 60366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,479 DEBUG Processing 91/909 atomic regions from SNP 27090 to 27691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,577 DEBUG Processing 107/865 atomic regions from SNP 31906 to 32507 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,583 DEBUG Processing 31/1140 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,618 DEBUG Processing 51/1032 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,665 DEBUG Processing 32/476 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:59,679 DEBUG Processing 201/221 atomic regions from SNP 60066 to 60666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,734 DEBUG Processing 92/909 atomic regions from SNP 27391 to 27992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,810 DEBUG Processing 108/865 atomic regions from SNP 32207 to 32808 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,862 DEBUG Processing 32/1140 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,889 DEBUG Processing 52/1032 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,899 DEBUG Processing 33/476 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:59,925 DEBUG Processing 202/221 atomic regions from SNP 60366 to 60966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,005 DEBUG Processing 93/909 atomic regions from SNP 27692 to 28293 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,054 DEBUG Processing 109/865 atomic regions from SNP 32508 to 33109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,133 DEBUG Processing 34/476 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:00,133 DEBUG Processing 33/1140 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,150 DEBUG Processing 53/1032 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,169 DEBUG Processing 203/221 atomic regions from SNP 60666 to 61266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,250 DEBUG Processing 94/909 atomic regions from SNP 27993 to 28594 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,301 DEBUG Processing 110/865 atomic regions from SNP 32809 to 33410 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,360 DEBUG Processing 35/476 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:00,404 DEBUG Processing 34/1140 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,406 DEBUG Processing 54/1032 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,408 DEBUG Processing 204/221 atomic regions from SNP 60966 to 61566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,496 DEBUG Processing 95/909 atomic regions from SNP 28294 to 28895 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,543 DEBUG Processing 111/865 atomic regions from SNP 33110 to 33711 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,588 DEBUG Processing 36/476 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:00,644 DEBUG Processing 205/221 atomic regions from SNP 61266 to 61866 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,661 DEBUG Processing 55/1032 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,675 DEBUG Processing 35/1140 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,741 DEBUG Processing 96/909 atomic regions from SNP 28595 to 29196 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,784 DEBUG Processing 112/865 atomic regions from SNP 33411 to 34012 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,829 DEBUG Processing 37/476 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:00,878 DEBUG Processing 206/221 atomic regions from SNP 61566 to 62166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,913 DEBUG Processing 56/1032 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,947 DEBUG Processing 36/1140 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,984 DEBUG Processing 97/909 atomic regions from SNP 28896 to 29497 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,025 DEBUG Processing 113/865 atomic regions from SNP 33712 to 34313 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,063 DEBUG Processing 38/476 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,115 DEBUG Processing 207/221 atomic regions from SNP 61866 to 62466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,163 DEBUG Processing 57/1032 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,210 DEBUG Processing 37/1140 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,227 DEBUG Processing 98/909 atomic regions from SNP 29197 to 29798 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,272 DEBUG Processing 114/865 atomic regions from SNP 34013 to 34614 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,297 DEBUG Processing 39/476 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,348 DEBUG Processing 208/221 atomic regions from SNP 62166 to 62766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,409 DEBUG Processing 58/1032 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,467 DEBUG Processing 99/909 atomic regions from SNP 29498 to 30099 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,475 DEBUG Processing 38/1140 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,532 DEBUG Processing 40/476 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,549 DEBUG Processing 115/865 atomic regions from SNP 34314 to 34915 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,587 DEBUG Processing 209/221 atomic regions from SNP 62466 to 63066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,657 DEBUG Processing 59/1032 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,700 DEBUG Processing 100/909 atomic regions from SNP 29799 to 30400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,744 DEBUG Processing 39/1140 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,755 DEBUG Processing 41/476 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,819 DEBUG Processing 116/865 atomic regions from SNP 34615 to 35216 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,821 DEBUG Processing 210/221 atomic regions from SNP 62766 to 63366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,904 DEBUG Processing 60/1032 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,939 DEBUG Processing 101/909 atomic regions from SNP 30100 to 30701 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,978 DEBUG Processing 42/476 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,012 DEBUG Processing 40/1140 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,053 DEBUG Processing 211/221 atomic regions from SNP 63066 to 63666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,080 DEBUG Processing 117/865 atomic regions from SNP 34916 to 35517 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,155 DEBUG Processing 61/1032 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,182 DEBUG Processing 102/909 atomic regions from SNP 30401 to 31002 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,203 DEBUG Processing 43/476 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,276 DEBUG Processing 41/1140 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,285 DEBUG Processing 212/221 atomic regions from SNP 63366 to 63966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,345 DEBUG Processing 118/865 atomic regions from SNP 35217 to 35818 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,409 DEBUG Processing 62/1032 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,441 DEBUG Processing 103/909 atomic regions from SNP 30702 to 31303 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,442 DEBUG Processing 44/476 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,532 DEBUG Processing 213/221 atomic regions from SNP 63666 to 64266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,541 DEBUG Processing 42/1140 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,608 DEBUG Processing 119/865 atomic regions from SNP 35518 to 36119 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,660 DEBUG Processing 63/1032 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,676 DEBUG Processing 45/476 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,687 DEBUG Processing 104/909 atomic regions from SNP 31003 to 31604 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,774 DEBUG Processing 214/221 atomic regions from SNP 63966 to 64566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,799 DEBUG Processing 43/1140 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,849 DEBUG Processing 120/865 atomic regions from SNP 35819 to 36420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,907 DEBUG Processing 64/1032 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,907 DEBUG Processing 46/476 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,935 DEBUG Processing 105/909 atomic regions from SNP 31304 to 31905 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,998 DEBUG Processing 215/221 atomic regions from SNP 64266 to 64866 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,056 DEBUG Processing 44/1140 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,075 DEBUG Processing 121/865 atomic regions from SNP 36120 to 36721 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,144 DEBUG Processing 47/476 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:03,163 DEBUG Processing 65/1032 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,195 DEBUG Processing 106/909 atomic regions from SNP 31605 to 32206 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,241 DEBUG Processing 216/221 atomic regions from SNP 64566 to 65166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,315 DEBUG Processing 45/1140 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,321 DEBUG Processing 122/865 atomic regions from SNP 36421 to 37022 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,368 DEBUG Processing 48/476 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:03,414 DEBUG Processing 66/1032 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,442 DEBUG Processing 107/909 atomic regions from SNP 31906 to 32507 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,497 DEBUG Processing 217/221 atomic regions from SNP 64866 to 65466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,556 DEBUG Processing 123/865 atomic regions from SNP 36722 to 37323 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,570 DEBUG Processing 46/1140 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,588 DEBUG Processing 49/476 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:03,666 DEBUG Processing 67/1032 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,683 DEBUG Processing 108/909 atomic regions from SNP 32207 to 32808 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,758 DEBUG Processing 218/221 atomic regions from SNP 65166 to 65766 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,785 DEBUG Processing 124/865 atomic regions from SNP 37023 to 37624 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,806 DEBUG Processing 50/476 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:03,828 DEBUG Processing 47/1140 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,916 DEBUG Processing 109/909 atomic regions from SNP 32508 to 33109 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,917 DEBUG Processing 68/1032 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,015 DEBUG Processing 219/221 atomic regions from SNP 65466 to 66066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,019 DEBUG Processing 125/865 atomic regions from SNP 37324 to 37925 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,031 DEBUG Processing 51/476 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,094 DEBUG Processing 48/1140 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,156 DEBUG Processing 110/909 atomic regions from SNP 32809 to 33410 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,167 DEBUG Processing 69/1032 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,262 DEBUG Processing 220/221 atomic regions from SNP 65766 to 66366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,264 DEBUG Processing 126/865 atomic regions from SNP 37625 to 38226 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,264 DEBUG Processing 52/476 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,368 DEBUG Processing 49/1140 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,387 DEBUG Processing 111/909 atomic regions from SNP 33110 to 33711 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,418 DEBUG Processing 70/1032 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,496 DEBUG Processing 53/476 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,506 DEBUG Processing 127/865 atomic regions from SNP 37926 to 38527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,521 DEBUG Processing 221/221 atomic regions from SNP 66066 to 66666 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,620 DEBUG Processing 112/909 atomic regions from SNP 33411 to 34012 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,636 DEBUG Processing 50/1140 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,668 DEBUG Processing 71/1032 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,668 DEBUG Unique SNPs positions in subchromosome 1: 66667 2025-01-31 09:43:04,724 DEBUG Processing 54/476 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,746 DEBUG Processing 128/865 atomic regions from SNP 38227 to 38828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,805 DEBUG Subchromosome time: 60.05064934096299, subchromosome SNPs: 66667 2025-01-31 09:43:04,853 DEBUG Processing 113/909 atomic regions from SNP 33712 to 34313 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,854 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:04,898 DEBUG Processing 51/1140 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,918 DEBUG Processing 72/1032 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,944 DEBUG Processing 55/476 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,978 DEBUG Processing 129/865 atomic regions from SNP 38528 to 39129 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,086 DEBUG Processing 114/909 atomic regions from SNP 34013 to 34614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,161 DEBUG Processing 52/1140 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,165 DEBUG Processing 56/476 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,169 DEBUG Processing 73/1032 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,207 DEBUG Processing 130/865 atomic regions from SNP 38829 to 39430 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,320 DEBUG Processing 115/909 atomic regions from SNP 34314 to 34915 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,386 DEBUG Processing 57/476 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,421 DEBUG Processing 74/1032 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,428 DEBUG Processing 53/1140 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,436 DEBUG Processing 131/865 atomic regions from SNP 39130 to 39731 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,555 DEBUG Processing 116/909 atomic regions from SNP 34615 to 35216 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,609 DEBUG Processing 58/476 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,664 DEBUG Processing 132/865 atomic regions from SNP 39431 to 40032 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,674 DEBUG Processing 75/1032 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,694 DEBUG Processing 54/1140 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,790 DEBUG Processing 117/909 atomic regions from SNP 34916 to 35517 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,832 DEBUG Processing 59/476 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,894 DEBUG Processing 133/865 atomic regions from SNP 39732 to 40333 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,930 DEBUG Processing 76/1032 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,962 DEBUG Processing 55/1140 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,025 DEBUG Processing 118/909 atomic regions from SNP 35217 to 35818 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,049 DEBUG Processing 60/476 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,124 DEBUG Processing 134/865 atomic regions from SNP 40033 to 40634 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,188 DEBUG Processing 77/1032 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,233 DEBUG Processing 56/1140 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,258 DEBUG Processing 119/909 atomic regions from SNP 35518 to 36119 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,266 DEBUG Processing 61/476 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,357 DEBUG Processing 135/865 atomic regions from SNP 40334 to 40935 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,446 DEBUG Processing 78/1032 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,489 DEBUG Processing 62/476 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,497 DEBUG Processing 120/909 atomic regions from SNP 35819 to 36420 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,501 DEBUG Processing 57/1140 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,588 DEBUG Processing 136/865 atomic regions from SNP 40635 to 41236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,700 DEBUG Processing 79/1032 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,715 DEBUG Processing 63/476 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,735 DEBUG Processing 121/909 atomic regions from SNP 36120 to 36721 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,766 DEBUG Processing 58/1140 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,830 DEBUG Processing 137/865 atomic regions from SNP 40936 to 41537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,939 DEBUG Processing 64/476 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,951 DEBUG Processing 80/1032 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,974 DEBUG Processing 122/909 atomic regions from SNP 36421 to 37022 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,037 DEBUG Processing 59/1140 atomic regions from SNP 17458 to 18058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,056 DEBUG Processing 138/865 atomic regions from SNP 41237 to 41838 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,163 DEBUG Processing 65/476 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,200 DEBUG Processing 81/1032 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,211 DEBUG Processing 123/909 atomic regions from SNP 36722 to 37323 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,282 DEBUG Processing 139/865 atomic regions from SNP 41538 to 42139 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,307 DEBUG Processing 60/1140 atomic regions from SNP 17758 to 18358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,383 DEBUG Processing 66/476 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,447 DEBUG Processing 124/909 atomic regions from SNP 37023 to 37624 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,454 DEBUG Processing 82/1032 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,511 DEBUG Processing 140/865 atomic regions from SNP 41839 to 42440 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,570 DEBUG Processing 61/1140 atomic regions from SNP 18058 to 18658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,599 DEBUG Processing 67/476 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,685 DEBUG Processing 125/909 atomic regions from SNP 37324 to 37925 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,709 DEBUG Processing 83/1032 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,743 DEBUG Processing 141/865 atomic regions from SNP 42140 to 42741 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,815 DEBUG Processing 68/476 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,826 DEBUG Processing 62/1140 atomic regions from SNP 18358 to 18958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,921 DEBUG Processing 126/909 atomic regions from SNP 37625 to 38226 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,965 DEBUG Processing 84/1032 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,975 DEBUG Processing 142/865 atomic regions from SNP 42441 to 43042 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,031 DEBUG Processing 69/476 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:08,082 DEBUG Processing 63/1140 atomic regions from SNP 18658 to 19258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,169 DEBUG Processing 127/909 atomic regions from SNP 37926 to 38527 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,222 DEBUG Processing 143/865 atomic regions from SNP 42742 to 43343 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,226 DEBUG Processing 85/1032 atomic regions from SNP 25284 to 25885 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,277 DEBUG Processing 70/476 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:08,344 DEBUG Processing 64/1140 atomic regions from SNP 18958 to 19558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,409 DEBUG Processing 128/909 atomic regions from SNP 38227 to 38828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,452 DEBUG Processing 144/865 atomic regions from SNP 43043 to 43644 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,476 DEBUG Processing 86/1032 atomic regions from SNP 25585 to 26186 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,510 DEBUG Processing 71/476 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:08,604 DEBUG Processing 65/1140 atomic regions from SNP 19258 to 19858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,652 DEBUG Processing 129/909 atomic regions from SNP 38528 to 39129 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,683 DEBUG Processing 145/865 atomic regions from SNP 43344 to 43945 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,721 DEBUG Processing 87/1032 atomic regions from SNP 25886 to 26487 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,752 DEBUG Processing 72/476 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:08,870 DEBUG Processing 66/1140 atomic regions from SNP 19558 to 20158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,893 DEBUG Processing 130/909 atomic regions from SNP 38829 to 39430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,915 DEBUG Processing 146/865 atomic regions from SNP 43645 to 44246 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,965 DEBUG Processing 88/1032 atomic regions from SNP 26187 to 26788 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,995 DEBUG Processing 73/476 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,134 DEBUG Processing 131/909 atomic regions from SNP 39130 to 39731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,139 DEBUG Processing 67/1140 atomic regions from SNP 19858 to 20458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,149 DEBUG Processing 147/865 atomic regions from SNP 43946 to 44547 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,214 DEBUG Processing 89/1032 atomic regions from SNP 26488 to 27089 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,217 DEBUG Processing 74/476 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,376 DEBUG Processing 132/909 atomic regions from SNP 39431 to 40032 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,387 DEBUG Processing 148/865 atomic regions from SNP 44247 to 44848 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,407 DEBUG Processing 68/1140 atomic regions from SNP 20158 to 20758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,439 DEBUG Processing 75/476 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,491 DEBUG Processing 90/1032 atomic regions from SNP 26789 to 27390 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,613 DEBUG Processing 133/909 atomic regions from SNP 39732 to 40333 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,631 DEBUG Processing 149/865 atomic regions from SNP 44548 to 45149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,666 DEBUG Processing 76/476 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,674 DEBUG Processing 69/1140 atomic regions from SNP 20458 to 21058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,739 DEBUG Processing 91/1032 atomic regions from SNP 27090 to 27691 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,851 DEBUG Processing 134/909 atomic regions from SNP 40033 to 40634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,884 DEBUG Processing 150/865 atomic regions from SNP 44849 to 45450 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,893 DEBUG Processing 77/476 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,937 DEBUG Processing 70/1140 atomic regions from SNP 20758 to 21358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,990 DEBUG Processing 92/1032 atomic regions from SNP 27391 to 27992 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,086 DEBUG Processing 135/909 atomic regions from SNP 40334 to 40935 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,122 DEBUG Processing 78/476 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:10,146 DEBUG Processing 151/865 atomic regions from SNP 45150 to 45751 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,200 DEBUG Processing 71/1140 atomic regions from SNP 21058 to 21658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,255 DEBUG Processing 93/1032 atomic regions from SNP 27692 to 28293 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,324 DEBUG Processing 136/909 atomic regions from SNP 40635 to 41236 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,351 DEBUG Processing 79/476 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:10,409 DEBUG Processing 152/865 atomic regions from SNP 45451 to 46052 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,466 DEBUG Processing 72/1140 atomic regions from SNP 21358 to 21958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,530 DEBUG Processing 94/1032 atomic regions from SNP 27993 to 28594 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,558 DEBUG Processing 137/909 atomic regions from SNP 40936 to 41537 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,573 DEBUG Processing 80/476 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:10,673 DEBUG Processing 153/865 atomic regions from SNP 45752 to 46353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,730 DEBUG Processing 73/1140 atomic regions from SNP 21658 to 22258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,794 DEBUG Processing 95/1032 atomic regions from SNP 28294 to 28895 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,794 DEBUG Processing 138/909 atomic regions from SNP 41237 to 41838 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,795 DEBUG Processing 81/476 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:10,933 DEBUG Processing 154/865 atomic regions from SNP 46053 to 46654 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,995 DEBUG Processing 74/1140 atomic regions from SNP 21958 to 22558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,015 DEBUG Processing 82/476 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:11,030 DEBUG Processing 139/909 atomic regions from SNP 41538 to 42139 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,053 DEBUG Processing 96/1032 atomic regions from SNP 28595 to 29196 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,196 DEBUG Processing 155/865 atomic regions from SNP 46354 to 46955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,238 DEBUG Processing 83/476 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:11,257 DEBUG Processing 75/1140 atomic regions from SNP 22258 to 22858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,268 DEBUG Processing 140/909 atomic regions from SNP 41839 to 42440 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,307 DEBUG Processing 97/1032 atomic regions from SNP 28896 to 29497 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,446 DEBUG Processing 156/865 atomic regions from SNP 46655 to 47256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,478 DEBUG Processing 84/476 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:11,508 DEBUG Processing 141/909 atomic regions from SNP 42140 to 42741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,521 DEBUG Processing 76/1140 atomic regions from SNP 22558 to 23158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,564 DEBUG Processing 98/1032 atomic regions from SNP 29197 to 29798 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,679 DEBUG Processing 157/865 atomic regions from SNP 46956 to 47557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,729 DEBUG Processing 85/476 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:11,747 DEBUG Processing 142/909 atomic regions from SNP 42441 to 43042 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,788 DEBUG Processing 77/1140 atomic regions from SNP 22858 to 23458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,822 DEBUG Processing 99/1032 atomic regions from SNP 29498 to 30099 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,914 DEBUG Processing 158/865 atomic regions from SNP 47257 to 47858 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,952 DEBUG Processing 86/476 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:11,987 DEBUG Processing 143/909 atomic regions from SNP 42742 to 43343 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,053 DEBUG Processing 78/1140 atomic regions from SNP 23158 to 23758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,080 DEBUG Processing 100/1032 atomic regions from SNP 29799 to 30400 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,150 DEBUG Processing 159/865 atomic regions from SNP 47558 to 48159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,186 DEBUG Processing 87/476 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:12,225 DEBUG Processing 144/909 atomic regions from SNP 43043 to 43644 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,319 DEBUG Processing 79/1140 atomic regions from SNP 23458 to 24058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,339 DEBUG Processing 101/1032 atomic regions from SNP 30100 to 30701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,382 DEBUG Processing 160/865 atomic regions from SNP 47859 to 48460 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,416 DEBUG Processing 88/476 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:12,472 DEBUG Processing 145/909 atomic regions from SNP 43344 to 43945 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,586 DEBUG Processing 80/1140 atomic regions from SNP 23758 to 24358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,592 DEBUG Processing 102/1032 atomic regions from SNP 30401 to 31002 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,641 DEBUG Processing 89/476 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:12,641 DEBUG Processing 161/865 atomic regions from SNP 48160 to 48761 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,711 DEBUG Processing 146/909 atomic regions from SNP 43645 to 44246 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,846 DEBUG Processing 103/1032 atomic regions from SNP 30702 to 31303 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,851 DEBUG Processing 81/1140 atomic regions from SNP 24058 to 24658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,863 DEBUG Processing 90/476 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:12,885 DEBUG Processing 162/865 atomic regions from SNP 48461 to 49062 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,950 DEBUG Processing 147/909 atomic regions from SNP 43946 to 44547 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,079 DEBUG Processing 91/476 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:13,096 DEBUG Processing 104/1032 atomic regions from SNP 31003 to 31604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,112 DEBUG Processing 163/865 atomic regions from SNP 48762 to 49363 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,117 DEBUG Processing 82/1140 atomic regions from SNP 24358 to 24958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,190 DEBUG Processing 148/909 atomic regions from SNP 44247 to 44848 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,299 DEBUG Processing 92/476 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:13,342 DEBUG Processing 164/865 atomic regions from SNP 49063 to 49664 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,347 DEBUG Processing 105/1032 atomic regions from SNP 31304 to 31905 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,386 DEBUG Processing 83/1140 atomic regions from SNP 24658 to 25258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,432 DEBUG Processing 149/909 atomic regions from SNP 44548 to 45149 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,533 DEBUG Processing 93/476 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:13,585 DEBUG Processing 165/865 atomic regions from SNP 49364 to 49965 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,599 DEBUG Processing 106/1032 atomic regions from SNP 31605 to 32206 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,658 DEBUG Processing 84/1140 atomic regions from SNP 24958 to 25558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,668 DEBUG Processing 150/909 atomic regions from SNP 44849 to 45450 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,766 DEBUG Processing 94/476 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:13,835 DEBUG Processing 166/865 atomic regions from SNP 49665 to 50266 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,853 DEBUG Processing 107/1032 atomic regions from SNP 31906 to 32507 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,902 DEBUG Processing 151/909 atomic regions from SNP 45150 to 45751 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,933 DEBUG Processing 85/1140 atomic regions from SNP 25258 to 25858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,986 DEBUG Processing 95/476 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:14,084 DEBUG Processing 167/865 atomic regions from SNP 49966 to 50567 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,114 DEBUG Processing 108/1032 atomic regions from SNP 32207 to 32808 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,137 DEBUG Processing 152/909 atomic regions from SNP 45451 to 46052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,200 DEBUG Processing 96/476 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:14,204 DEBUG Processing 86/1140 atomic regions from SNP 25558 to 26158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,342 DEBUG Processing 168/865 atomic regions from SNP 50267 to 50868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,374 DEBUG Processing 109/1032 atomic regions from SNP 32508 to 33109 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,374 DEBUG Processing 153/909 atomic regions from SNP 45752 to 46353 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,419 DEBUG Processing 97/476 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:14,473 DEBUG Processing 87/1140 atomic regions from SNP 25858 to 26458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,601 DEBUG Processing 169/865 atomic regions from SNP 50568 to 51169 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,611 DEBUG Processing 154/909 atomic regions from SNP 46053 to 46654 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,629 DEBUG Processing 110/1032 atomic regions from SNP 32809 to 33410 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,645 DEBUG Processing 98/476 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:14,739 DEBUG Processing 88/1140 atomic regions from SNP 26158 to 26758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,853 DEBUG Processing 155/909 atomic regions from SNP 46354 to 46955 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,864 DEBUG Processing 170/865 atomic regions from SNP 50869 to 51470 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,876 DEBUG Processing 99/476 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:14,881 DEBUG Processing 111/1032 atomic regions from SNP 33110 to 33711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,009 DEBUG Processing 89/1140 atomic regions from SNP 26458 to 27058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,102 DEBUG Processing 156/909 atomic regions from SNP 46655 to 47256 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,110 DEBUG Processing 100/476 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:15,119 DEBUG Processing 171/865 atomic regions from SNP 51170 to 51771 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,133 DEBUG Processing 112/1032 atomic regions from SNP 33411 to 34012 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,275 DEBUG Processing 90/1140 atomic regions from SNP 26758 to 27358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,342 DEBUG Processing 101/476 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:15,343 DEBUG Processing 157/909 atomic regions from SNP 46956 to 47557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,358 DEBUG Processing 172/865 atomic regions from SNP 51471 to 52072 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,387 DEBUG Processing 113/1032 atomic regions from SNP 33712 to 34313 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,538 DEBUG Processing 91/1140 atomic regions from SNP 27058 to 27658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,576 DEBUG Processing 102/476 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:15,600 DEBUG Processing 158/909 atomic regions from SNP 47257 to 47858 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,612 DEBUG Processing 173/865 atomic regions from SNP 51772 to 52373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,646 DEBUG Processing 114/1032 atomic regions from SNP 34013 to 34614 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,797 DEBUG Processing 92/1140 atomic regions from SNP 27358 to 27958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,801 DEBUG Processing 103/476 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:15,865 DEBUG Processing 159/909 atomic regions from SNP 47558 to 48159 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,879 DEBUG Processing 174/865 atomic regions from SNP 52073 to 52674 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,903 DEBUG Processing 115/1032 atomic regions from SNP 34314 to 34915 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,016 DEBUG Processing 104/476 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:16,062 DEBUG Processing 93/1140 atomic regions from SNP 27658 to 28258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,108 DEBUG Processing 160/909 atomic regions from SNP 47859 to 48460 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,129 DEBUG Processing 175/865 atomic regions from SNP 52374 to 52975 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,157 DEBUG Processing 116/1032 atomic regions from SNP 34615 to 35216 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,230 DEBUG Processing 105/476 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:16,326 DEBUG Processing 94/1140 atomic regions from SNP 27958 to 28558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,345 DEBUG Processing 161/909 atomic regions from SNP 48160 to 48761 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,392 DEBUG Processing 176/865 atomic regions from SNP 52675 to 53276 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,409 DEBUG Processing 117/1032 atomic regions from SNP 34916 to 35517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,444 DEBUG Processing 106/476 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:16,578 DEBUG Processing 162/909 atomic regions from SNP 48461 to 49062 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,597 DEBUG Processing 95/1140 atomic regions from SNP 28258 to 28858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,635 DEBUG Processing 177/865 atomic regions from SNP 52976 to 53577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,663 DEBUG Processing 118/1032 atomic regions from SNP 35217 to 35818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,668 DEBUG Processing 107/476 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:16,808 DEBUG Processing 163/909 atomic regions from SNP 48762 to 49363 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,866 DEBUG Processing 96/1140 atomic regions from SNP 28558 to 29158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,886 DEBUG Processing 178/865 atomic regions from SNP 53277 to 53878 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,891 DEBUG Processing 108/476 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:16,913 DEBUG Processing 119/1032 atomic regions from SNP 35518 to 36119 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,036 DEBUG Processing 164/909 atomic regions from SNP 49063 to 49664 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,114 DEBUG Processing 109/476 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:17,132 DEBUG Processing 97/1140 atomic regions from SNP 28858 to 29458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,153 DEBUG Processing 179/865 atomic regions from SNP 53578 to 54179 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,165 DEBUG Processing 120/1032 atomic regions from SNP 35819 to 36420 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,261 DEBUG Processing 165/909 atomic regions from SNP 49364 to 49965 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,347 DEBUG Processing 110/476 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:17,397 DEBUG Processing 98/1140 atomic regions from SNP 29158 to 29758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,411 DEBUG Processing 180/865 atomic regions from SNP 53879 to 54480 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,420 DEBUG Processing 121/1032 atomic regions from SNP 36120 to 36721 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,496 DEBUG Processing 166/909 atomic regions from SNP 49665 to 50266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,572 DEBUG Processing 111/476 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:17,659 DEBUG Processing 181/865 atomic regions from SNP 54180 to 54781 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,665 DEBUG Processing 99/1140 atomic regions from SNP 29458 to 30058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,677 DEBUG Processing 122/1032 atomic regions from SNP 36421 to 37022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,743 DEBUG Processing 167/909 atomic regions from SNP 49966 to 50567 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,798 DEBUG Processing 112/476 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:17,909 DEBUG Processing 182/865 atomic regions from SNP 54481 to 55082 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,930 DEBUG Processing 100/1140 atomic regions from SNP 29758 to 30358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,931 DEBUG Processing 123/1032 atomic regions from SNP 36722 to 37323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,986 DEBUG Processing 168/909 atomic regions from SNP 50267 to 50868 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,019 DEBUG Processing 113/476 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:18,157 DEBUG Processing 183/865 atomic regions from SNP 54782 to 55383 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,189 DEBUG Processing 124/1032 atomic regions from SNP 37023 to 37623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,200 DEBUG Processing 101/1140 atomic regions from SNP 30058 to 30658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,237 DEBUG Processing 169/909 atomic regions from SNP 50568 to 51169 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,254 DEBUG Processing 114/476 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:18,405 DEBUG Processing 184/865 atomic regions from SNP 55083 to 55684 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,454 DEBUG Processing 125/1032 atomic regions from SNP 37323 to 37923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,476 DEBUG Processing 102/1140 atomic regions from SNP 30358 to 30958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,490 DEBUG Processing 170/909 atomic regions from SNP 50869 to 51470 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,495 DEBUG Processing 115/476 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:18,640 DEBUG Processing 185/865 atomic regions from SNP 55384 to 55985 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,716 DEBUG Processing 126/1032 atomic regions from SNP 37623 to 38223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,738 DEBUG Processing 171/909 atomic regions from SNP 51170 to 51771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,740 DEBUG Processing 116/476 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:18,747 DEBUG Processing 103/1140 atomic regions from SNP 30658 to 31258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,874 DEBUG Processing 186/865 atomic regions from SNP 55685 to 56286 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,969 DEBUG Processing 117/476 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:18,974 DEBUG Processing 127/1032 atomic regions from SNP 37923 to 38523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,980 DEBUG Processing 172/909 atomic regions from SNP 51471 to 52072 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,014 DEBUG Processing 104/1140 atomic regions from SNP 30958 to 31558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,114 DEBUG Processing 187/865 atomic regions from SNP 55986 to 56587 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,193 DEBUG Processing 118/476 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:19,219 DEBUG Processing 173/909 atomic regions from SNP 51772 to 52373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,245 DEBUG Processing 128/1032 atomic regions from SNP 38223 to 38823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,283 DEBUG Processing 105/1140 atomic regions from SNP 31258 to 31858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,371 DEBUG Processing 188/865 atomic regions from SNP 56287 to 56888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,413 DEBUG Processing 119/476 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:19,453 DEBUG Processing 174/909 atomic regions from SNP 52073 to 52674 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,513 DEBUG Processing 129/1032 atomic regions from SNP 38523 to 39123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,552 DEBUG Processing 106/1140 atomic regions from SNP 31558 to 32158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,636 DEBUG Processing 189/865 atomic regions from SNP 56588 to 57189 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,637 DEBUG Processing 120/476 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:19,698 DEBUG Processing 175/909 atomic regions from SNP 52374 to 52975 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,795 DEBUG Processing 130/1032 atomic regions from SNP 38823 to 39423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,816 DEBUG Processing 107/1140 atomic regions from SNP 31858 to 32458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,867 DEBUG Processing 121/476 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:19,903 DEBUG Processing 190/865 atomic regions from SNP 56889 to 57490 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,933 DEBUG Processing 176/909 atomic regions from SNP 52675 to 53276 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,082 DEBUG Processing 131/1032 atomic regions from SNP 39123 to 39723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,085 DEBUG Processing 108/1140 atomic regions from SNP 32158 to 32758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,099 DEBUG Processing 122/476 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:20,156 DEBUG Processing 191/865 atomic regions from SNP 57190 to 57791 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,173 DEBUG Processing 177/909 atomic regions from SNP 52976 to 53577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,325 DEBUG Processing 123/476 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:20,357 DEBUG Processing 109/1140 atomic regions from SNP 32458 to 33058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,375 DEBUG Processing 132/1032 atomic regions from SNP 39423 to 40023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,398 DEBUG Processing 192/865 atomic regions from SNP 57491 to 58092 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,416 DEBUG Processing 178/909 atomic regions from SNP 53277 to 53878 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,544 DEBUG Processing 124/476 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:20,628 DEBUG Processing 110/1140 atomic regions from SNP 32758 to 33358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,641 DEBUG Processing 193/865 atomic regions from SNP 57792 to 58393 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,663 DEBUG Processing 179/909 atomic regions from SNP 53578 to 54179 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,668 DEBUG Processing 133/1032 atomic regions from SNP 39723 to 40323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,758 DEBUG Processing 125/476 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:20,885 DEBUG Processing 194/865 atomic regions from SNP 58093 to 58694 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,898 DEBUG Processing 111/1140 atomic regions from SNP 33058 to 33658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,912 DEBUG Processing 180/909 atomic regions from SNP 53879 to 54480 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,949 DEBUG Processing 134/1032 atomic regions from SNP 40023 to 40623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,974 DEBUG Processing 126/476 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:21,125 DEBUG Processing 195/865 atomic regions from SNP 58394 to 58995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,161 DEBUG Processing 181/909 atomic regions from SNP 54180 to 54781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,162 DEBUG Processing 112/1140 atomic regions from SNP 33358 to 33958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,198 DEBUG Processing 127/476 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:21,213 DEBUG Processing 135/1032 atomic regions from SNP 40323 to 40923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,367 DEBUG Processing 196/865 atomic regions from SNP 58695 to 59296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,407 DEBUG Processing 182/909 atomic regions from SNP 54481 to 55082 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,422 DEBUG Processing 113/1140 atomic regions from SNP 33658 to 34258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,425 DEBUG Processing 128/476 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:21,491 DEBUG Processing 136/1032 atomic regions from SNP 40623 to 41223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,600 DEBUG Processing 197/865 atomic regions from SNP 58996 to 59597 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,650 DEBUG Processing 183/909 atomic regions from SNP 54782 to 55383 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,654 DEBUG Processing 129/476 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:21,686 DEBUG Processing 114/1140 atomic regions from SNP 33958 to 34558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,782 DEBUG Processing 137/1032 atomic regions from SNP 40923 to 41523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,832 DEBUG Processing 198/865 atomic regions from SNP 59297 to 59898 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,878 DEBUG Processing 130/476 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:21,889 DEBUG Processing 184/909 atomic regions from SNP 55083 to 55684 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,952 DEBUG Processing 115/1140 atomic regions from SNP 34258 to 34858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,065 DEBUG Processing 138/1032 atomic regions from SNP 41223 to 41823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,071 DEBUG Processing 199/865 atomic regions from SNP 59598 to 60199 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,104 DEBUG Processing 131/476 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:22,129 DEBUG Processing 185/909 atomic regions from SNP 55384 to 55985 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,219 DEBUG Processing 116/1140 atomic regions from SNP 34558 to 35158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,316 DEBUG Processing 200/865 atomic regions from SNP 59899 to 60500 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,332 DEBUG Processing 132/476 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:22,354 DEBUG Processing 139/1032 atomic regions from SNP 41523 to 42123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,374 DEBUG Processing 186/909 atomic regions from SNP 55685 to 56286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,485 DEBUG Processing 117/1140 atomic regions from SNP 34858 to 35458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,556 DEBUG Processing 133/476 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:22,565 DEBUG Processing 201/865 atomic regions from SNP 60200 to 60801 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,617 DEBUG Processing 187/909 atomic regions from SNP 55986 to 56587 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,641 DEBUG Processing 140/1032 atomic regions from SNP 41823 to 42423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,747 DEBUG Processing 118/1140 atomic regions from SNP 35158 to 35758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,776 DEBUG Processing 134/476 atomic regions from SNP 40033 to 40633 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:22,800 DEBUG Processing 202/865 atomic regions from SNP 60501 to 61102 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,858 DEBUG Processing 188/909 atomic regions from SNP 56287 to 56888 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,910 DEBUG Processing 141/1032 atomic regions from SNP 42123 to 42723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,996 DEBUG Processing 135/476 atomic regions from SNP 40333 to 40933 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:23,004 DEBUG Processing 119/1140 atomic regions from SNP 35458 to 36058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,033 DEBUG Processing 203/865 atomic regions from SNP 60802 to 61403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,096 DEBUG Processing 189/909 atomic regions from SNP 56588 to 57189 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,201 DEBUG Processing 142/1032 atomic regions from SNP 42423 to 43023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,221 DEBUG Processing 136/476 atomic regions from SNP 40633 to 41233 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:23,264 DEBUG Processing 120/1140 atomic regions from SNP 35758 to 36358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,273 DEBUG Processing 204/865 atomic regions from SNP 61103 to 61704 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,334 DEBUG Processing 190/909 atomic regions from SNP 56889 to 57490 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,445 DEBUG Processing 137/476 atomic regions from SNP 40933 to 41533 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:23,483 DEBUG Processing 143/1032 atomic regions from SNP 42723 to 43323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,513 DEBUG Processing 205/865 atomic regions from SNP 61404 to 62005 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,526 DEBUG Processing 121/1140 atomic regions from SNP 36058 to 36658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,570 DEBUG Processing 191/909 atomic regions from SNP 57190 to 57791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,663 DEBUG Processing 138/476 atomic regions from SNP 41233 to 41833 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:23,759 DEBUG Processing 206/865 atomic regions from SNP 61705 to 62306 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,767 DEBUG Processing 144/1032 atomic regions from SNP 43023 to 43623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,796 DEBUG Processing 122/1140 atomic regions from SNP 36358 to 36958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,811 DEBUG Processing 192/909 atomic regions from SNP 57491 to 58092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,877 DEBUG Processing 139/476 atomic regions from SNP 41533 to 42133 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:24,004 DEBUG Processing 207/865 atomic regions from SNP 62006 to 62607 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,054 DEBUG Processing 193/909 atomic regions from SNP 57792 to 58393 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,062 DEBUG Processing 145/1032 atomic regions from SNP 43323 to 43923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,069 DEBUG Processing 123/1140 atomic regions from SNP 36658 to 37258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,094 DEBUG Processing 140/476 atomic regions from SNP 41833 to 42433 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:24,248 DEBUG Processing 208/865 atomic regions from SNP 62307 to 62908 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,298 DEBUG Processing 194/909 atomic regions from SNP 58093 to 58694 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,318 DEBUG Processing 141/476 atomic regions from SNP 42133 to 42733 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:24,346 DEBUG Processing 124/1140 atomic regions from SNP 36958 to 37558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,358 DEBUG Processing 146/1032 atomic regions from SNP 43623 to 44223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,489 DEBUG Processing 209/865 atomic regions from SNP 62608 to 63209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,545 DEBUG Processing 142/476 atomic regions from SNP 42433 to 43033 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:24,545 DEBUG Processing 195/909 atomic regions from SNP 58394 to 58995 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,610 DEBUG Processing 125/1140 atomic regions from SNP 37258 to 37858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,642 DEBUG Processing 147/1032 atomic regions from SNP 43923 to 44523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,732 DEBUG Processing 210/865 atomic regions from SNP 62909 to 63510 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,778 DEBUG Processing 143/476 atomic regions from SNP 42733 to 43333 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:24,793 DEBUG Processing 196/909 atomic regions from SNP 58695 to 59296 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,874 DEBUG Processing 126/1140 atomic regions from SNP 37558 to 38158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,926 DEBUG Processing 148/1032 atomic regions from SNP 44223 to 44823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,973 DEBUG Processing 211/865 atomic regions from SNP 63210 to 63811 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,007 DEBUG Processing 144/476 atomic regions from SNP 43033 to 43633 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:25,040 DEBUG Processing 197/909 atomic regions from SNP 58996 to 59597 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,140 DEBUG Processing 127/1140 atomic regions from SNP 37858 to 38458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,216 DEBUG Processing 212/865 atomic regions from SNP 63511 to 64112 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,216 DEBUG Processing 149/1032 atomic regions from SNP 44523 to 45123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,239 DEBUG Processing 145/476 atomic regions from SNP 43333 to 43933 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:25,289 DEBUG Processing 198/909 atomic regions from SNP 59297 to 59898 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,407 DEBUG Processing 128/1140 atomic regions from SNP 38158 to 38758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,460 DEBUG Processing 213/865 atomic regions from SNP 63812 to 64413 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,472 DEBUG Processing 146/476 atomic regions from SNP 43633 to 44233 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:25,499 DEBUG Processing 150/1032 atomic regions from SNP 44823 to 45423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,535 DEBUG Processing 199/909 atomic regions from SNP 59598 to 60199 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,670 DEBUG Processing 129/1140 atomic regions from SNP 38458 to 39058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,703 DEBUG Processing 214/865 atomic regions from SNP 64113 to 64714 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,708 DEBUG Processing 147/476 atomic regions from SNP 43933 to 44533 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:25,778 DEBUG Processing 151/1032 atomic regions from SNP 45123 to 45723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,783 DEBUG Processing 200/909 atomic regions from SNP 59899 to 60500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,936 DEBUG Processing 130/1140 atomic regions from SNP 38758 to 39358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,939 DEBUG Processing 148/476 atomic regions from SNP 44233 to 44833 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:25,949 DEBUG Processing 215/865 atomic regions from SNP 64414 to 65015 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,026 DEBUG Processing 201/909 atomic regions from SNP 60200 to 60801 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,058 DEBUG Processing 152/1032 atomic regions from SNP 45423 to 46023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,166 DEBUG Processing 149/476 atomic regions from SNP 44533 to 45133 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:26,192 DEBUG Processing 216/865 atomic regions from SNP 64715 to 65316 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,203 DEBUG Processing 131/1140 atomic regions from SNP 39058 to 39658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,270 DEBUG Processing 202/909 atomic regions from SNP 60501 to 61102 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,345 DEBUG Processing 153/1032 atomic regions from SNP 45723 to 46323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,393 DEBUG Processing 150/476 atomic regions from SNP 44833 to 45433 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:26,430 DEBUG Processing 217/865 atomic regions from SNP 65016 to 65617 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,470 DEBUG Processing 132/1140 atomic regions from SNP 39358 to 39958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,510 DEBUG Processing 203/909 atomic regions from SNP 60802 to 61403 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,618 DEBUG Processing 151/476 atomic regions from SNP 45133 to 45733 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:26,623 DEBUG Processing 154/1032 atomic regions from SNP 46023 to 46623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,669 DEBUG Processing 218/865 atomic regions from SNP 65317 to 65918 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,743 DEBUG Processing 133/1140 atomic regions from SNP 39658 to 40258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,752 DEBUG Processing 204/909 atomic regions from SNP 61103 to 61704 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,841 DEBUG Processing 152/476 atomic regions from SNP 45433 to 46033 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:26,892 DEBUG Processing 155/1032 atomic regions from SNP 46323 to 46923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,909 DEBUG Processing 219/865 atomic regions from SNP 65618 to 66219 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,993 DEBUG Processing 205/909 atomic regions from SNP 61404 to 62005 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,015 DEBUG Processing 134/1140 atomic regions from SNP 39958 to 40558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,061 DEBUG Processing 153/476 atomic regions from SNP 45733 to 46333 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:27,150 DEBUG Processing 220/865 atomic regions from SNP 65919 to 66520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,158 DEBUG Processing 156/1032 atomic regions from SNP 46623 to 47223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,234 DEBUG Processing 206/909 atomic regions from SNP 61705 to 62306 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,278 DEBUG Processing 154/476 atomic regions from SNP 46033 to 46633 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:27,285 DEBUG Processing 135/1140 atomic regions from SNP 40258 to 40858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,387 DEBUG Processing 221/865 atomic regions from SNP 66220 to 66821 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,434 DEBUG Processing 157/1032 atomic regions from SNP 46923 to 47523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,477 DEBUG Processing 207/909 atomic regions from SNP 62006 to 62607 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,499 DEBUG Processing 155/476 atomic regions from SNP 46333 to 46933 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:27,552 DEBUG Processing 136/1140 atomic regions from SNP 40558 to 41158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,619 DEBUG Processing 222/865 atomic regions from SNP 66521 to 67122 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,709 DEBUG Processing 158/1032 atomic regions from SNP 47223 to 47823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,724 DEBUG Processing 208/909 atomic regions from SNP 62307 to 62908 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,728 DEBUG Processing 156/476 atomic regions from SNP 46633 to 47233 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:27,823 DEBUG Processing 137/1140 atomic regions from SNP 40858 to 41458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,852 DEBUG Processing 223/865 atomic regions from SNP 66822 to 67423 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,960 DEBUG Processing 157/476 atomic regions from SNP 46933 to 47533 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:27,972 DEBUG Processing 209/909 atomic regions from SNP 62608 to 63209 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,992 DEBUG Processing 159/1032 atomic regions from SNP 47523 to 48123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,082 DEBUG Processing 224/865 atomic regions from SNP 67123 to 67724 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,091 DEBUG Processing 138/1140 atomic regions from SNP 41158 to 41758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,195 DEBUG Processing 158/476 atomic regions from SNP 47233 to 47833 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:28,221 DEBUG Processing 210/909 atomic regions from SNP 62909 to 63510 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,277 DEBUG Processing 160/1032 atomic regions from SNP 47823 to 48423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,290 DEBUG Segmenting atomic regions: 2025-01-31 09:43:28,320 DEBUG Processing 225/865 atomic regions from SNP 67424 to 68025 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,370 DEBUG Processing 139/1140 atomic regions from SNP 41458 to 42058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,410 DEBUG Processing 1/653 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,422 DEBUG Processing 159/476 atomic regions from SNP 47533 to 48133 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:28,469 DEBUG Processing 211/909 atomic regions from SNP 63210 to 63811 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,560 DEBUG Processing 226/865 atomic regions from SNP 67725 to 68326 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,567 DEBUG Processing 161/1032 atomic regions from SNP 48123 to 48723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,648 DEBUG Processing 140/1140 atomic regions from SNP 41758 to 42358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,649 DEBUG Processing 160/476 atomic regions from SNP 47833 to 48433 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:28,676 DEBUG Processing 2/653 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,715 DEBUG Processing 212/909 atomic regions from SNP 63511 to 64112 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,799 DEBUG Processing 227/865 atomic regions from SNP 68026 to 68627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,862 DEBUG Processing 162/1032 atomic regions from SNP 48423 to 49023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,877 DEBUG Processing 161/476 atomic regions from SNP 48133 to 48733 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:28,927 DEBUG Processing 141/1140 atomic regions from SNP 42058 to 42658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,939 DEBUG Processing 3/653 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,958 DEBUG Processing 213/909 atomic regions from SNP 63812 to 64413 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,049 DEBUG Processing 228/865 atomic regions from SNP 68327 to 68928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,106 DEBUG Processing 162/476 atomic regions from SNP 48433 to 49033 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:29,157 DEBUG Processing 163/1032 atomic regions from SNP 48723 to 49323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,186 DEBUG Processing 4/653 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,202 DEBUG Processing 142/1140 atomic regions from SNP 42358 to 42958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,204 DEBUG Processing 214/909 atomic regions from SNP 64113 to 64714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,290 DEBUG Processing 229/865 atomic regions from SNP 68628 to 69229 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,332 DEBUG Processing 163/476 atomic regions from SNP 48733 to 49333 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:29,451 DEBUG Processing 164/1032 atomic regions from SNP 49023 to 49623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,452 DEBUG Processing 5/653 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,452 DEBUG Processing 215/909 atomic regions from SNP 64414 to 65014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,485 DEBUG Processing 143/1140 atomic regions from SNP 42658 to 43258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,535 DEBUG Processing 230/865 atomic regions from SNP 68929 to 69530 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,562 DEBUG Processing 164/476 atomic regions from SNP 49033 to 49633 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:29,695 DEBUG Processing 216/909 atomic regions from SNP 64714 to 65314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,724 DEBUG Processing 6/653 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,743 DEBUG Processing 165/1032 atomic regions from SNP 49323 to 49923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,769 DEBUG Processing 144/1140 atomic regions from SNP 42958 to 43558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,781 DEBUG Processing 231/865 atomic regions from SNP 69230 to 69831 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,792 DEBUG Processing 165/476 atomic regions from SNP 49333 to 49933 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:29,937 DEBUG Processing 217/909 atomic regions from SNP 65014 to 65614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,981 DEBUG Processing 7/653 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,025 DEBUG Processing 166/476 atomic regions from SNP 49633 to 50233 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:30,028 DEBUG Processing 232/865 atomic regions from SNP 69531 to 70132 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,036 DEBUG Processing 166/1032 atomic regions from SNP 49623 to 50223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,052 DEBUG Processing 145/1140 atomic regions from SNP 43258 to 43858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,178 DEBUG Processing 218/909 atomic regions from SNP 65314 to 65914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,237 DEBUG Processing 8/653 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,258 DEBUG Processing 167/476 atomic regions from SNP 49933 to 50533 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:30,273 DEBUG Processing 233/865 atomic regions from SNP 69832 to 70433 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,339 DEBUG Processing 167/1032 atomic regions from SNP 49923 to 50523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,340 DEBUG Processing 146/1140 atomic regions from SNP 43558 to 44158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,429 DEBUG Processing 219/909 atomic regions from SNP 65614 to 66214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,486 DEBUG Processing 168/476 atomic regions from SNP 50233 to 50833 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:30,500 DEBUG Processing 9/653 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,511 DEBUG Processing 234/865 atomic regions from SNP 70133 to 70734 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,624 DEBUG Processing 147/1140 atomic regions from SNP 43858 to 44458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,636 DEBUG Processing 168/1032 atomic regions from SNP 50223 to 50823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,678 DEBUG Processing 220/909 atomic regions from SNP 65914 to 66514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,715 DEBUG Processing 169/476 atomic regions from SNP 50533 to 51133 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:30,744 DEBUG Processing 10/653 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,748 DEBUG Processing 235/865 atomic regions from SNP 70434 to 71035 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,909 DEBUG Processing 148/1140 atomic regions from SNP 44158 to 44758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,925 DEBUG Processing 221/909 atomic regions from SNP 66214 to 66814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,926 DEBUG Processing 169/1032 atomic regions from SNP 50523 to 51123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,945 DEBUG Processing 170/476 atomic regions from SNP 50833 to 51433 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:30,985 DEBUG Processing 236/865 atomic regions from SNP 70735 to 71336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,990 DEBUG Processing 11/653 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,178 DEBUG Processing 222/909 atomic regions from SNP 66514 to 67114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,182 DEBUG Processing 171/476 atomic regions from SNP 51133 to 51733 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:31,192 DEBUG Processing 149/1140 atomic regions from SNP 44458 to 45058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,218 DEBUG Processing 170/1032 atomic regions from SNP 50823 to 51423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,231 DEBUG Processing 237/865 atomic regions from SNP 71036 to 71637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,251 DEBUG Processing 12/653 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,417 DEBUG Processing 172/476 atomic regions from SNP 51433 to 52033 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:31,438 DEBUG Processing 223/909 atomic regions from SNP 66814 to 67414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,471 DEBUG Processing 150/1140 atomic regions from SNP 44758 to 45358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,476 DEBUG Processing 238/865 atomic regions from SNP 71337 to 71938 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,494 DEBUG Processing 13/653 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,505 DEBUG Processing 171/1032 atomic regions from SNP 51123 to 51723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,643 DEBUG Processing 173/476 atomic regions from SNP 51733 to 52333 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:31,686 DEBUG Processing 224/909 atomic regions from SNP 67114 to 67714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,718 DEBUG Processing 239/865 atomic regions from SNP 71638 to 72239 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,740 DEBUG Processing 14/653 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,754 DEBUG Processing 151/1140 atomic regions from SNP 45058 to 45658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,791 DEBUG Processing 172/1032 atomic regions from SNP 51423 to 52023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,873 DEBUG Processing 174/476 atomic regions from SNP 52033 to 52633 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:31,932 DEBUG Processing 225/909 atomic regions from SNP 67414 to 68014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,958 DEBUG Processing 240/865 atomic regions from SNP 71939 to 72540 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,006 DEBUG Processing 15/653 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,034 DEBUG Processing 152/1140 atomic regions from SNP 45358 to 45958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,077 DEBUG Processing 173/1032 atomic regions from SNP 51723 to 52323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,107 DEBUG Processing 175/476 atomic regions from SNP 52333 to 52933 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:32,186 DEBUG Processing 226/909 atomic regions from SNP 67714 to 68314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,211 DEBUG Processing 241/865 atomic regions from SNP 72240 to 72841 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,266 DEBUG Processing 16/653 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,310 DEBUG Processing 153/1140 atomic regions from SNP 45658 to 46258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,348 DEBUG Processing 176/476 atomic regions from SNP 52633 to 53233 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:32,364 DEBUG Processing 174/1032 atomic regions from SNP 52023 to 52623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,440 DEBUG Processing 227/909 atomic regions from SNP 68014 to 68614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,450 DEBUG Processing 242/865 atomic regions from SNP 72541 to 73142 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,531 DEBUG Processing 17/653 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,580 DEBUG Processing 154/1140 atomic regions from SNP 45958 to 46558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,584 DEBUG Processing 177/476 atomic regions from SNP 52933 to 53533 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:32,659 DEBUG Processing 175/1032 atomic regions from SNP 52323 to 52923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,687 DEBUG Processing 243/865 atomic regions from SNP 72842 to 73443 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,691 DEBUG Processing 228/909 atomic regions from SNP 68314 to 68914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,794 DEBUG Processing 18/653 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,815 DEBUG Processing 178/476 atomic regions from SNP 53233 to 53833 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:32,857 DEBUG Processing 155/1140 atomic regions from SNP 46258 to 46858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,934 DEBUG Processing 244/865 atomic regions from SNP 73143 to 73744 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,946 DEBUG Processing 229/909 atomic regions from SNP 68614 to 69214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,961 DEBUG Processing 176/1032 atomic regions from SNP 52623 to 53223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,040 DEBUG Processing 179/476 atomic regions from SNP 53533 to 54133 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:33,050 DEBUG Processing 19/653 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,131 DEBUG Processing 156/1140 atomic regions from SNP 46558 to 47158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,183 DEBUG Processing 245/865 atomic regions from SNP 73444 to 74045 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,206 DEBUG Processing 230/909 atomic regions from SNP 68914 to 69514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,257 DEBUG Processing 177/1032 atomic regions from SNP 52923 to 53523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,272 DEBUG Processing 180/476 atomic regions from SNP 53833 to 54433 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:33,309 DEBUG Processing 20/653 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,397 DEBUG Processing 157/1140 atomic regions from SNP 46858 to 47458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,430 DEBUG Processing 246/865 atomic regions from SNP 73745 to 74346 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,467 DEBUG Processing 231/909 atomic regions from SNP 69214 to 69814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,509 DEBUG Processing 181/476 atomic regions from SNP 54133 to 54733 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:33,576 DEBUG Processing 21/653 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,578 DEBUG Processing 178/1032 atomic regions from SNP 53223 to 53823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,664 DEBUG Processing 158/1140 atomic regions from SNP 47158 to 47758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,678 DEBUG Processing 247/865 atomic regions from SNP 74046 to 74647 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,733 DEBUG Processing 232/909 atomic regions from SNP 69514 to 70114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,758 DEBUG Processing 182/476 atomic regions from SNP 54433 to 55033 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:33,849 DEBUG Processing 22/653 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,905 DEBUG Processing 179/1032 atomic regions from SNP 53523 to 54123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,939 DEBUG Processing 248/865 atomic regions from SNP 74347 to 74948 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,944 DEBUG Processing 159/1140 atomic regions from SNP 47458 to 48058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,998 DEBUG Processing 233/909 atomic regions from SNP 69814 to 70414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,005 DEBUG Processing 183/476 atomic regions from SNP 54733 to 55333 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:34,122 DEBUG Processing 23/653 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,200 DEBUG Processing 249/865 atomic regions from SNP 74648 to 75249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,238 DEBUG Processing 160/1140 atomic regions from SNP 47758 to 48358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,238 DEBUG Processing 180/1032 atomic regions from SNP 53823 to 54423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,256 DEBUG Processing 184/476 atomic regions from SNP 55033 to 55633 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:34,267 DEBUG Processing 234/909 atomic regions from SNP 70114 to 70714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,408 DEBUG Processing 24/653 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,471 DEBUG Processing 250/865 atomic regions from SNP 74949 to 75550 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,516 DEBUG Processing 185/476 atomic regions from SNP 55333 to 55933 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:34,530 DEBUG Processing 161/1140 atomic regions from SNP 48058 to 48658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,544 DEBUG Processing 235/909 atomic regions from SNP 70414 to 71014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,570 DEBUG Processing 181/1032 atomic regions from SNP 54123 to 54723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,690 DEBUG Processing 25/653 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,745 DEBUG Processing 251/865 atomic regions from SNP 75250 to 75851 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,776 DEBUG Processing 186/476 atomic regions from SNP 55633 to 56233 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:34,822 DEBUG Processing 236/909 atomic regions from SNP 70714 to 71314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,826 DEBUG Processing 162/1140 atomic regions from SNP 48358 to 48958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,898 DEBUG Processing 182/1032 atomic regions from SNP 54423 to 55023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,980 DEBUG Processing 26/653 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,022 DEBUG Processing 252/865 atomic regions from SNP 75551 to 76152 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,067 DEBUG Processing 187/476 atomic regions from SNP 55933 to 56533 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:35,159 DEBUG Processing 237/909 atomic regions from SNP 71014 to 71614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,210 DEBUG Processing 163/1140 atomic regions from SNP 48658 to 49258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,304 DEBUG Processing 183/1032 atomic regions from SNP 54723 to 55323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,308 DEBUG Processing 27/653 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,336 DEBUG Processing 188/476 atomic regions from SNP 56233 to 56833 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:35,336 DEBUG Processing 253/865 atomic regions from SNP 75852 to 76453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,415 DEBUG Processing 238/909 atomic regions from SNP 71314 to 71914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,484 DEBUG Processing 164/1140 atomic regions from SNP 48958 to 49558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,585 DEBUG Processing 28/653 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,592 DEBUG Processing 189/476 atomic regions from SNP 56533 to 57133 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:35,604 DEBUG Processing 184/1032 atomic regions from SNP 55023 to 55623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,607 DEBUG Processing 254/865 atomic regions from SNP 76153 to 76754 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,672 DEBUG Processing 239/909 atomic regions from SNP 71614 to 72214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,762 DEBUG Processing 165/1140 atomic regions from SNP 49258 to 49858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,839 DEBUG Processing 190/476 atomic regions from SNP 56833 to 57433 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:35,841 DEBUG Processing 29/653 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,868 DEBUG Processing 255/865 atomic regions from SNP 76454 to 77055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,899 DEBUG Processing 185/1032 atomic regions from SNP 55323 to 55923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,935 DEBUG Processing 240/909 atomic regions from SNP 71914 to 72514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,034 DEBUG Processing 166/1140 atomic regions from SNP 49558 to 50158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,083 DEBUG Processing 191/476 atomic regions from SNP 57133 to 57733 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:36,087 DEBUG Processing 30/653 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,116 DEBUG Processing 256/865 atomic regions from SNP 76755 to 77355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,199 DEBUG Processing 241/909 atomic regions from SNP 72214 to 72814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,200 DEBUG Processing 186/1032 atomic regions from SNP 55623 to 56223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,307 DEBUG Processing 167/1140 atomic regions from SNP 49858 to 50458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,330 DEBUG Processing 192/476 atomic regions from SNP 57433 to 58033 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:36,334 DEBUG Processing 31/653 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,367 DEBUG Processing 257/865 atomic regions from SNP 77055 to 77655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,461 DEBUG Processing 242/909 atomic regions from SNP 72514 to 73114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,492 DEBUG Processing 187/1032 atomic regions from SNP 55923 to 56523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,578 DEBUG Processing 168/1140 atomic regions from SNP 50158 to 50758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,581 DEBUG Processing 193/476 atomic regions from SNP 57733 to 58333 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:36,581 DEBUG Processing 32/653 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,612 DEBUG Processing 258/865 atomic regions from SNP 77355 to 77955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,712 DEBUG Processing 243/909 atomic regions from SNP 72814 to 73414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,767 DEBUG Processing 188/1032 atomic regions from SNP 56223 to 56823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,826 DEBUG Processing 33/653 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,833 DEBUG Processing 194/476 atomic regions from SNP 58033 to 58633 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:36,850 DEBUG Processing 169/1140 atomic regions from SNP 50458 to 51058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,856 DEBUG Processing 259/865 atomic regions from SNP 77655 to 78255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,969 DEBUG Processing 244/909 atomic regions from SNP 73114 to 73714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,042 DEBUG Processing 189/1032 atomic regions from SNP 56523 to 57123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,090 DEBUG Processing 34/653 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,101 DEBUG Processing 195/476 atomic regions from SNP 58333 to 58933 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:37,109 DEBUG Processing 260/865 atomic regions from SNP 77955 to 78555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,140 DEBUG Processing 170/1140 atomic regions from SNP 50758 to 51358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,220 DEBUG Processing 245/909 atomic regions from SNP 73414 to 74014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,314 DEBUG Processing 190/1032 atomic regions from SNP 56823 to 57423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,347 DEBUG Processing 35/653 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,362 DEBUG Processing 196/476 atomic regions from SNP 58633 to 59233 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:37,370 DEBUG Processing 261/865 atomic regions from SNP 78255 to 78855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,424 DEBUG Processing 171/1140 atomic regions from SNP 51058 to 51658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,475 DEBUG Processing 246/909 atomic regions from SNP 73714 to 74314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,608 DEBUG Processing 36/653 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,613 DEBUG Processing 191/1032 atomic regions from SNP 57123 to 57723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,616 DEBUG Processing 197/476 atomic regions from SNP 58933 to 59533 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:37,630 DEBUG Processing 262/865 atomic regions from SNP 78555 to 79155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,705 DEBUG Processing 172/1140 atomic regions from SNP 51358 to 51958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,724 DEBUG Processing 247/909 atomic regions from SNP 74014 to 74614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,865 DEBUG Processing 37/653 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,867 DEBUG Processing 198/476 atomic regions from SNP 59233 to 59833 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:37,889 DEBUG Processing 263/865 atomic regions from SNP 78855 to 79455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,916 DEBUG Processing 192/1032 atomic regions from SNP 57423 to 58023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,979 DEBUG Processing 248/909 atomic regions from SNP 74314 to 74914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,991 DEBUG Processing 173/1140 atomic regions from SNP 51658 to 52258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,125 DEBUG Processing 199/476 atomic regions from SNP 59533 to 60133 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:38,132 DEBUG Processing 38/653 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,158 DEBUG Processing 264/865 atomic regions from SNP 79155 to 79755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,220 DEBUG Processing 193/1032 atomic regions from SNP 57723 to 58323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,244 DEBUG Processing 249/909 atomic regions from SNP 74614 to 75214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,274 DEBUG Processing 174/1140 atomic regions from SNP 51958 to 52558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,382 DEBUG Processing 200/476 atomic regions from SNP 59833 to 60433 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:38,396 DEBUG Processing 39/653 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,426 DEBUG Processing 265/865 atomic regions from SNP 79455 to 80055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,504 DEBUG Processing 194/1032 atomic regions from SNP 58023 to 58623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,507 DEBUG Processing 250/909 atomic regions from SNP 74914 to 75514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,555 DEBUG Processing 175/1140 atomic regions from SNP 52258 to 52858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,628 DEBUG Processing 201/476 atomic regions from SNP 60133 to 60733 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:38,654 DEBUG Processing 40/653 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,690 DEBUG Processing 266/865 atomic regions from SNP 79755 to 80355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,772 DEBUG Processing 251/909 atomic regions from SNP 75214 to 75814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,806 DEBUG Processing 195/1032 atomic regions from SNP 58323 to 58923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,852 DEBUG Processing 176/1140 atomic regions from SNP 52558 to 53158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,911 DEBUG Processing 202/476 atomic regions from SNP 60433 to 61033 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:38,970 DEBUG Processing 41/653 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,994 DEBUG Processing 267/865 atomic regions from SNP 80055 to 80655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,153 DEBUG Processing 252/909 atomic regions from SNP 75514 to 76114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,245 DEBUG Processing 196/1032 atomic regions from SNP 58623 to 59223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,254 DEBUG Processing 203/476 atomic regions from SNP 60733 to 61333 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:39,275 DEBUG Processing 177/1140 atomic regions from SNP 52858 to 53458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,280 DEBUG Processing 42/653 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,284 DEBUG Processing 268/865 atomic regions from SNP 80355 to 80955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,467 DEBUG Processing 253/909 atomic regions from SNP 75814 to 76414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,649 DEBUG Processing 204/476 atomic regions from SNP 61033 to 61633 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:39,658 DEBUG Processing 43/653 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,660 DEBUG Processing 269/865 atomic regions from SNP 80655 to 81255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,674 DEBUG Processing 197/1032 atomic regions from SNP 58923 to 59523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,693 DEBUG Processing 178/1140 atomic regions from SNP 53158 to 53758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,826 DEBUG Processing 254/909 atomic regions from SNP 76114 to 76714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,921 DEBUG Processing 44/653 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,927 DEBUG Processing 270/865 atomic regions from SNP 80955 to 81555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,928 DEBUG Processing 205/476 atomic regions from SNP 61333 to 61933 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:39,970 DEBUG Processing 198/1032 atomic regions from SNP 59223 to 59823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,976 DEBUG Processing 179/1140 atomic regions from SNP 53458 to 54058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,094 DEBUG Processing 255/909 atomic regions from SNP 76414 to 77014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,184 DEBUG Processing 45/653 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,194 DEBUG Processing 271/865 atomic regions from SNP 81255 to 81855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,217 DEBUG Processing 206/476 atomic regions from SNP 61633 to 62233 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:40,281 DEBUG Processing 199/1032 atomic regions from SNP 59523 to 60123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,292 DEBUG Processing 180/1140 atomic regions from SNP 53758 to 54358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,369 DEBUG Processing 256/909 atomic regions from SNP 76714 to 77314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,447 DEBUG Processing 46/653 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,453 DEBUG Processing 272/865 atomic regions from SNP 81555 to 82155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,493 DEBUG Processing 207/476 atomic regions from SNP 61933 to 62533 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:40,583 DEBUG Processing 200/1032 atomic regions from SNP 59823 to 60423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,607 DEBUG Processing 181/1140 atomic regions from SNP 54058 to 54658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,692 DEBUG Processing 257/909 atomic regions from SNP 77014 to 77614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,785 DEBUG Processing 47/653 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,796 DEBUG Processing 273/865 atomic regions from SNP 81855 to 82455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,880 DEBUG Processing 208/476 atomic regions from SNP 62233 to 62833 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:40,977 DEBUG Processing 201/1032 atomic regions from SNP 60123 to 60723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,011 DEBUG Processing 182/1140 atomic regions from SNP 54358 to 54958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,048 DEBUG Processing 258/909 atomic regions from SNP 77314 to 77914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,084 DEBUG Processing 48/653 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,106 DEBUG Processing 274/865 atomic regions from SNP 82155 to 82755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,163 DEBUG Processing 209/476 atomic regions from SNP 62533 to 63133 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:41,267 DEBUG Processing 202/1032 atomic regions from SNP 60423 to 61023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,403 DEBUG Processing 183/1140 atomic regions from SNP 54658 to 55258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,406 DEBUG Processing 259/909 atomic regions from SNP 77614 to 78214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,462 DEBUG Processing 49/653 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,493 DEBUG Processing 275/865 atomic regions from SNP 82455 to 83055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,534 DEBUG Processing 210/476 atomic regions from SNP 62833 to 63433 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:41,620 DEBUG Processing 203/1032 atomic regions from SNP 60723 to 61323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,673 DEBUG Processing 260/909 atomic regions from SNP 77914 to 78514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,734 DEBUG Processing 184/1140 atomic regions from SNP 54958 to 55558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,734 DEBUG Processing 50/653 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,771 DEBUG Processing 276/865 atomic regions from SNP 82755 to 83355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,816 DEBUG Processing 211/476 atomic regions from SNP 63133 to 63733 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:41,908 DEBUG Processing 204/1032 atomic regions from SNP 61023 to 61623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,927 DEBUG Processing 261/909 atomic regions from SNP 78214 to 78814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,013 DEBUG Processing 51/653 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,075 DEBUG Processing 185/1140 atomic regions from SNP 55258 to 55858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,076 DEBUG Processing 277/865 atomic regions from SNP 83055 to 83655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,114 DEBUG Processing 212/476 atomic regions from SNP 63433 to 64033 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:42,240 DEBUG Processing 205/1032 atomic regions from SNP 61323 to 61923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,257 DEBUG Processing 262/909 atomic regions from SNP 78514 to 79114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,354 DEBUG Processing 52/653 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,437 DEBUG Processing 213/476 atomic regions from SNP 63733 to 64333 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:42,441 DEBUG Processing 278/865 atomic regions from SNP 83355 to 83955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,448 DEBUG Processing 186/1140 atomic regions from SNP 55558 to 56158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,649 DEBUG Processing 263/909 atomic regions from SNP 78814 to 79414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,668 DEBUG Processing 206/1032 atomic regions from SNP 61623 to 62223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,751 DEBUG Processing 53/653 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,814 DEBUG Processing 214/476 atomic regions from SNP 64033 to 64633 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:42,854 DEBUG Processing 279/865 atomic regions from SNP 83655 to 84255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,881 DEBUG Processing 187/1140 atomic regions from SNP 55858 to 56458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,123 DEBUG Processing 264/909 atomic regions from SNP 79114 to 79714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,149 DEBUG Processing 207/1032 atomic regions from SNP 61923 to 62523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,203 DEBUG Processing 54/653 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,232 DEBUG Processing 215/476 atomic regions from SNP 64333 to 64933 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:43,307 DEBUG Processing 280/865 atomic regions from SNP 83955 to 84555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,369 DEBUG Processing 188/1140 atomic regions from SNP 56158 to 56758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,538 DEBUG Processing 265/909 atomic regions from SNP 79414 to 80014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,573 DEBUG Processing 208/1032 atomic regions from SNP 62223 to 62823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,578 DEBUG Processing 55/653 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,589 DEBUG Processing 216/476 atomic regions from SNP 64633 to 65233 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:43,599 DEBUG Processing 281/865 atomic regions from SNP 84255 to 84855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,790 DEBUG Processing 189/1140 atomic regions from SNP 56458 to 57058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,962 DEBUG Processing 266/909 atomic regions from SNP 79714 to 80314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,002 DEBUG Processing 56/653 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,004 DEBUG Processing 282/865 atomic regions from SNP 84555 to 85155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,020 DEBUG Processing 217/476 atomic regions from SNP 64933 to 65533 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:44,029 DEBUG Processing 209/1032 atomic regions from SNP 62523 to 63123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,185 DEBUG Processing 190/1140 atomic regions from SNP 56758 to 57358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,409 DEBUG Processing 267/909 atomic regions from SNP 80014 to 80614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,467 DEBUG Processing 57/653 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,474 DEBUG Processing 218/476 atomic regions from SNP 65233 to 65833 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:44,485 DEBUG Processing 283/865 atomic regions from SNP 84855 to 85455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,559 DEBUG Processing 210/1032 atomic regions from SNP 62823 to 63423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,711 DEBUG Processing 191/1140 atomic regions from SNP 57058 to 57658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,873 DEBUG Processing 268/909 atomic regions from SNP 80314 to 80914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,924 DEBUG Processing 58/653 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,010 DEBUG Processing 219/476 atomic regions from SNP 65533 to 66133 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:45,011 DEBUG Processing 284/865 atomic regions from SNP 85155 to 85755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,083 DEBUG Processing 211/1032 atomic regions from SNP 63123 to 63723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,301 DEBUG Processing 192/1140 atomic regions from SNP 57358 to 57958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,339 DEBUG Processing 269/909 atomic regions from SNP 80614 to 81214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,395 DEBUG Processing 59/653 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,470 DEBUG Processing 220/476 atomic regions from SNP 65833 to 66433 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:45,524 DEBUG Processing 285/865 atomic regions from SNP 85455 to 86055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,647 DEBUG Processing 212/1032 atomic regions from SNP 63423 to 64023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,811 DEBUG Processing 193/1140 atomic regions from SNP 57658 to 58258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,835 DEBUG Processing 60/653 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,898 DEBUG Processing 270/909 atomic regions from SNP 80914 to 81514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,921 DEBUG Processing 221/476 atomic regions from SNP 66133 to 66733 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:46,003 DEBUG Processing 286/865 atomic regions from SNP 85755 to 86355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,184 DEBUG Processing 213/1032 atomic regions from SNP 63723 to 64323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,352 DEBUG Processing 61/653 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,368 DEBUG Processing 194/1140 atomic regions from SNP 57958 to 58558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,403 DEBUG Processing 271/909 atomic regions from SNP 81214 to 81814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,423 DEBUG Processing 222/476 atomic regions from SNP 66433 to 67033 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:46,481 DEBUG Processing 287/865 atomic regions from SNP 86055 to 86655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,686 DEBUG Processing 214/1032 atomic regions from SNP 64023 to 64623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,764 DEBUG Processing 62/653 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,853 DEBUG Processing 195/1140 atomic regions from SNP 58258 to 58858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,880 DEBUG Processing 223/476 atomic regions from SNP 66733 to 67333 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:46,906 DEBUG Processing 272/909 atomic regions from SNP 81514 to 82114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,944 DEBUG Processing 288/865 atomic regions from SNP 86355 to 86955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,150 DEBUG Processing 63/653 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,163 DEBUG Processing 215/1032 atomic regions from SNP 64323 to 64923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,190 DEBUG Processing 224/476 atomic regions from SNP 67033 to 67633 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:47,240 DEBUG Processing 273/909 atomic regions from SNP 81814 to 82414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,241 DEBUG Processing 289/865 atomic regions from SNP 86655 to 87255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,245 DEBUG Processing 196/1140 atomic regions from SNP 58558 to 59158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,630 DEBUG Processing 64/653 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,646 DEBUG Processing 225/476 atomic regions from SNP 67333 to 67933 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:47,669 DEBUG Processing 290/865 atomic regions from SNP 86955 to 87555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,674 DEBUG Processing 216/1032 atomic regions from SNP 64623 to 65223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,679 DEBUG Processing 274/909 atomic regions from SNP 82114 to 82714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,723 DEBUG Processing 197/1140 atomic regions from SNP 58858 to 59458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,092 DEBUG Processing 65/653 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,166 DEBUG Processing 226/476 atomic regions from SNP 67633 to 68233 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:48,182 DEBUG Processing 291/865 atomic regions from SNP 87255 to 87855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,192 DEBUG Processing 275/909 atomic regions from SNP 82414 to 83014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,210 DEBUG Processing 217/1032 atomic regions from SNP 64923 to 65523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,256 DEBUG Processing 198/1140 atomic regions from SNP 59158 to 59758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,474 DEBUG Processing 66/653 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,611 DEBUG Processing 227/476 atomic regions from SNP 67933 to 68533 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:48,661 DEBUG Processing 292/865 atomic regions from SNP 87555 to 88155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,682 DEBUG Processing 276/909 atomic regions from SNP 82714 to 83314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,696 DEBUG Processing 218/1032 atomic regions from SNP 65223 to 65823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,721 DEBUG Processing 199/1140 atomic regions from SNP 59458 to 60058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,820 DEBUG Processing 67/653 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,007 DEBUG Processing 228/476 atomic regions from SNP 68233 to 68833 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:49,118 DEBUG Processing 293/865 atomic regions from SNP 87855 to 88455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,153 DEBUG Processing 277/909 atomic regions from SNP 83014 to 83614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,157 DEBUG Processing 219/1032 atomic regions from SNP 65523 to 66123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,162 DEBUG Processing 68/653 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,202 DEBUG Processing 200/1140 atomic regions from SNP 59758 to 60358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,246 DEBUG Processing 229/476 atomic regions from SNP 68533 to 69133 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:49,451 DEBUG Processing 294/865 atomic regions from SNP 88155 to 88755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,563 DEBUG Processing 69/653 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,574 DEBUG Processing 220/1032 atomic regions from SNP 65823 to 66423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,578 DEBUG Processing 278/909 atomic regions from SNP 83314 to 83914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,623 DEBUG Processing 230/476 atomic regions from SNP 68833 to 69433 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:49,654 DEBUG Processing 201/1140 atomic regions from SNP 60058 to 60658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,735 DEBUG Processing 295/865 atomic regions from SNP 88455 to 89055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,970 DEBUG Processing 70/653 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,065 DEBUG Processing 279/909 atomic regions from SNP 83614 to 84214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,083 DEBUG Processing 221/1032 atomic regions from SNP 66123 to 66723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,120 DEBUG Processing 231/476 atomic regions from SNP 69133 to 69733 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:50,219 DEBUG Processing 202/1140 atomic regions from SNP 60358 to 60958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,231 DEBUG Processing 296/865 atomic regions from SNP 88755 to 89355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,298 DEBUG Processing 71/653 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,505 DEBUG Processing 280/909 atomic regions from SNP 83914 to 84514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,534 DEBUG Processing 222/1032 atomic regions from SNP 66423 to 67023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,537 DEBUG Processing 232/476 atomic regions from SNP 69433 to 70033 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:50,662 DEBUG Processing 297/865 atomic regions from SNP 89055 to 89655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,663 DEBUG Processing 72/653 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,725 DEBUG Processing 203/1140 atomic regions from SNP 60658 to 61258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,890 DEBUG Processing 281/909 atomic regions from SNP 84214 to 84814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,984 DEBUG Processing 233/476 atomic regions from SNP 69733 to 70333 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:51,010 DEBUG Processing 223/1032 atomic regions from SNP 66723 to 67323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,079 DEBUG Processing 73/653 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,094 DEBUG Processing 298/865 atomic regions from SNP 89355 to 89955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,171 DEBUG Processing 204/1140 atomic regions from SNP 60958 to 61558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,176 DEBUG Processing 282/909 atomic regions from SNP 84514 to 85114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,230 DEBUG Processing 234/476 atomic regions from SNP 70033 to 70633 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:51,300 DEBUG Processing 224/1032 atomic regions from SNP 67023 to 67623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,418 DEBUG Processing 74/653 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,449 DEBUG Processing 299/865 atomic regions from SNP 89655 to 90255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,556 DEBUG Processing 283/909 atomic regions from SNP 84814 to 85414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,591 DEBUG Processing 235/476 atomic regions from SNP 70333 to 70933 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:51,604 DEBUG Processing 205/1140 atomic regions from SNP 61258 to 61858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,687 DEBUG Processing 225/1032 atomic regions from SNP 67323 to 67923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,707 DEBUG Processing 75/653 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,733 DEBUG Processing 300/865 atomic regions from SNP 89955 to 90555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,834 DEBUG Processing 284/909 atomic regions from SNP 85114 to 85714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,855 DEBUG Processing 236/476 atomic regions from SNP 70633 to 71233 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:51,895 DEBUG Processing 206/1140 atomic regions from SNP 61558 to 62158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,972 DEBUG Processing 76/653 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,982 DEBUG Processing 226/1032 atomic regions from SNP 67623 to 68223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,001 DEBUG Processing 301/865 atomic regions from SNP 90255 to 90855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,099 DEBUG Processing 285/909 atomic regions from SNP 85414 to 86014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,103 DEBUG Processing 237/476 atomic regions from SNP 70933 to 71533 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:52,179 DEBUG Processing 207/1140 atomic regions from SNP 61858 to 62458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,218 DEBUG Processing 77/653 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,255 DEBUG Processing 302/865 atomic regions from SNP 90555 to 91155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,260 DEBUG Processing 227/1032 atomic regions from SNP 67923 to 68523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,353 DEBUG Processing 238/476 atomic regions from SNP 71233 to 71833 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:52,359 DEBUG Processing 286/909 atomic regions from SNP 85714 to 86314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,462 DEBUG Processing 78/653 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,469 DEBUG Processing 208/1140 atomic regions from SNP 62158 to 62758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,502 DEBUG Processing 303/865 atomic regions from SNP 90855 to 91455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,521 DEBUG Processing 228/1032 atomic regions from SNP 68223 to 68823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,599 DEBUG Processing 239/476 atomic regions from SNP 71533 to 72133 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:52,618 DEBUG Processing 287/909 atomic regions from SNP 86014 to 86614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,710 DEBUG Processing 79/653 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,755 DEBUG Processing 304/865 atomic regions from SNP 91155 to 91755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,770 DEBUG Processing 209/1140 atomic regions from SNP 62458 to 63058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,786 DEBUG Processing 229/1032 atomic regions from SNP 68523 to 69123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,842 DEBUG Processing 240/476 atomic regions from SNP 71833 to 72433 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:52,879 DEBUG Processing 288/909 atomic regions from SNP 86314 to 86914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,959 DEBUG Processing 80/653 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,006 DEBUG Processing 305/865 atomic regions from SNP 91455 to 92055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,058 DEBUG Processing 230/1032 atomic regions from SNP 68823 to 69423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,074 DEBUG Processing 210/1140 atomic regions from SNP 62758 to 63358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,080 DEBUG Processing 241/476 atomic regions from SNP 72133 to 72733 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:53,134 DEBUG Processing 289/909 atomic regions from SNP 86614 to 87214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,206 DEBUG Processing 81/653 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,269 DEBUG Processing 306/865 atomic regions from SNP 91755 to 92355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,328 DEBUG Processing 242/476 atomic regions from SNP 72433 to 73033 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:53,336 DEBUG Processing 231/1032 atomic regions from SNP 69123 to 69723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,367 DEBUG Processing 211/1140 atomic regions from SNP 63058 to 63658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,392 DEBUG Processing 290/909 atomic regions from SNP 86914 to 87514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,447 DEBUG Processing 82/653 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,524 DEBUG Processing 307/865 atomic regions from SNP 92055 to 92655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,571 DEBUG Processing 243/476 atomic regions from SNP 72733 to 73333 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:53,614 DEBUG Processing 232/1032 atomic regions from SNP 69423 to 70023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,654 DEBUG Processing 291/909 atomic regions from SNP 87214 to 87814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,665 DEBUG Processing 212/1140 atomic regions from SNP 63358 to 63958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,692 DEBUG Processing 83/653 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,777 DEBUG Processing 308/865 atomic regions from SNP 92355 to 92955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,813 DEBUG Processing 244/476 atomic regions from SNP 73033 to 73633 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:53,882 DEBUG Processing 233/1032 atomic regions from SNP 69723 to 70323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,915 DEBUG Processing 292/909 atomic regions from SNP 87514 to 88114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,943 DEBUG Processing 84/653 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,964 DEBUG Processing 213/1140 atomic regions from SNP 63658 to 64258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,028 DEBUG Processing 309/865 atomic regions from SNP 92655 to 93255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,053 DEBUG Processing 245/476 atomic regions from SNP 73333 to 73933 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:54,147 DEBUG Processing 234/1032 atomic regions from SNP 70023 to 70623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,174 DEBUG Processing 293/909 atomic regions from SNP 87814 to 88414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,197 DEBUG Processing 85/653 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,254 DEBUG Processing 214/1140 atomic regions from SNP 63958 to 64558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,277 DEBUG Processing 310/865 atomic regions from SNP 92955 to 93555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,286 DEBUG Processing 246/476 atomic regions from SNP 73633 to 74233 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:54,410 DEBUG Processing 235/1032 atomic regions from SNP 70323 to 70923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,435 DEBUG Processing 294/909 atomic regions from SNP 88114 to 88714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,448 DEBUG Processing 86/653 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,521 DEBUG Processing 247/476 atomic regions from SNP 73933 to 74533 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:54,530 DEBUG Processing 311/865 atomic regions from SNP 93255 to 93855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,535 DEBUG Processing 215/1140 atomic regions from SNP 64258 to 64858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,679 DEBUG Processing 236/1032 atomic regions from SNP 70623 to 71223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,698 DEBUG Processing 295/909 atomic regions from SNP 88414 to 89014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,709 DEBUG Processing 87/653 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,769 DEBUG Processing 248/476 atomic regions from SNP 74233 to 74833 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:54,790 DEBUG Processing 312/865 atomic regions from SNP 93555 to 94155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,813 DEBUG Processing 216/1140 atomic regions from SNP 64558 to 65158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,947 DEBUG Processing 237/1032 atomic regions from SNP 70923 to 71523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,954 DEBUG Processing 296/909 atomic regions from SNP 88714 to 89314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,958 DEBUG Processing 88/653 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,022 DEBUG Processing 249/476 atomic regions from SNP 74533 to 75133 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,051 DEBUG Processing 313/865 atomic regions from SNP 93855 to 94455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,092 DEBUG Processing 217/1140 atomic regions from SNP 64858 to 65458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,197 DEBUG Processing 89/653 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,201 DEBUG Processing 297/909 atomic regions from SNP 89014 to 89614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,213 DEBUG Processing 238/1032 atomic regions from SNP 71223 to 71823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,275 DEBUG Processing 250/476 atomic regions from SNP 74833 to 75433 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,313 DEBUG Processing 314/865 atomic regions from SNP 94155 to 94755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,371 DEBUG Processing 218/1140 atomic regions from SNP 65158 to 65758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,436 DEBUG Processing 90/653 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,446 DEBUG Processing 298/909 atomic regions from SNP 89314 to 89914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,488 DEBUG Processing 239/1032 atomic regions from SNP 71523 to 72123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,517 DEBUG Processing 251/476 atomic regions from SNP 75133 to 75733 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,568 DEBUG Processing 315/865 atomic regions from SNP 94455 to 95055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,639 DEBUG Processing 219/1140 atomic regions from SNP 65458 to 66058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,686 DEBUG Processing 91/653 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,693 DEBUG Processing 299/909 atomic regions from SNP 89614 to 90214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,759 DEBUG Processing 252/476 atomic regions from SNP 75433 to 76033 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,769 DEBUG Processing 240/1032 atomic regions from SNP 71823 to 72423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,821 DEBUG Processing 316/865 atomic regions from SNP 94755 to 95355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,909 DEBUG Processing 220/1140 atomic regions from SNP 65758 to 66358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,942 DEBUG Processing 92/653 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,945 DEBUG Processing 300/909 atomic regions from SNP 89914 to 90514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,997 DEBUG Processing 253/476 atomic regions from SNP 75733 to 76333 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,040 DEBUG Processing 241/1032 atomic regions from SNP 72123 to 72723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,068 DEBUG Processing 317/865 atomic regions from SNP 95055 to 95655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,181 DEBUG Processing 221/1140 atomic regions from SNP 66058 to 66658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,181 DEBUG Processing 93/653 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,193 DEBUG Processing 301/909 atomic regions from SNP 90214 to 90814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,230 DEBUG Processing 254/476 atomic regions from SNP 76033 to 76633 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,302 DEBUG Processing 242/1032 atomic regions from SNP 72423 to 73023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,311 DEBUG Processing 318/865 atomic regions from SNP 95355 to 95955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,422 DEBUG Processing 94/653 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,441 DEBUG Processing 302/909 atomic regions from SNP 90514 to 91114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,451 DEBUG Processing 222/1140 atomic regions from SNP 66358 to 66958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,464 DEBUG Processing 255/476 atomic regions from SNP 76333 to 76933 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,556 DEBUG Processing 319/865 atomic regions from SNP 95655 to 96255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,567 DEBUG Processing 243/1032 atomic regions from SNP 72723 to 73323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,660 DEBUG Processing 95/653 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,695 DEBUG Processing 303/909 atomic regions from SNP 90814 to 91414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,701 DEBUG Processing 256/476 atomic regions from SNP 76633 to 77233 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,718 DEBUG Processing 223/1140 atomic regions from SNP 66658 to 67258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,806 DEBUG Processing 320/865 atomic regions from SNP 95955 to 96555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,831 DEBUG Processing 244/1032 atomic regions from SNP 73023 to 73623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,902 DEBUG Processing 96/653 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,937 DEBUG Processing 257/476 atomic regions from SNP 76933 to 77533 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,944 DEBUG Processing 304/909 atomic regions from SNP 91114 to 91714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,990 DEBUG Processing 224/1140 atomic regions from SNP 66958 to 67558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,056 DEBUG Processing 321/865 atomic regions from SNP 96255 to 96855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,093 DEBUG Processing 245/1032 atomic regions from SNP 73323 to 73923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,142 DEBUG Processing 97/653 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,174 DEBUG Processing 258/476 atomic regions from SNP 77233 to 77833 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:57,201 DEBUG Processing 305/909 atomic regions from SNP 91414 to 92014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,269 DEBUG Processing 225/1140 atomic regions from SNP 67258 to 67858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,313 DEBUG Processing 322/865 atomic regions from SNP 96555 to 97155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,363 DEBUG Processing 246/1032 atomic regions from SNP 73623 to 74223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,392 DEBUG Processing 98/653 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,412 DEBUG Processing 259/476 atomic regions from SNP 77533 to 78133 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:57,455 DEBUG Processing 306/909 atomic regions from SNP 91714 to 92314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,544 DEBUG Processing 226/1140 atomic regions from SNP 67558 to 68158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,564 DEBUG Processing 323/865 atomic regions from SNP 96855 to 97455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,640 DEBUG Processing 247/1032 atomic regions from SNP 73923 to 74523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,650 DEBUG Processing 99/653 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,654 DEBUG Processing 260/476 atomic regions from SNP 77833 to 78433 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:57,708 DEBUG Processing 307/909 atomic regions from SNP 92014 to 92614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,822 DEBUG Processing 324/865 atomic regions from SNP 97155 to 97755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,831 DEBUG Processing 227/1140 atomic regions from SNP 67858 to 68458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,903 DEBUG Processing 261/476 atomic regions from SNP 78133 to 78733 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:57,913 DEBUG Processing 100/653 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,925 DEBUG Processing 248/1032 atomic regions from SNP 74223 to 74823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,959 DEBUG Processing 308/909 atomic regions from SNP 92314 to 92914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,067 DEBUG Processing 325/865 atomic regions from SNP 97455 to 98055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,102 DEBUG Processing 228/1140 atomic regions from SNP 68158 to 68758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,149 DEBUG Processing 262/476 atomic regions from SNP 78433 to 79033 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,177 DEBUG Processing 101/653 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,203 DEBUG Processing 249/1032 atomic regions from SNP 74523 to 75123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,214 DEBUG Processing 309/909 atomic regions from SNP 92614 to 93214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,315 DEBUG Processing 326/865 atomic regions from SNP 97755 to 98355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,378 DEBUG Processing 229/1140 atomic regions from SNP 68458 to 69058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,395 DEBUG Processing 263/476 atomic regions from SNP 78733 to 79333 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,438 DEBUG Processing 102/653 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,471 DEBUG Processing 250/1032 atomic regions from SNP 74823 to 75423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,477 DEBUG Processing 310/909 atomic regions from SNP 92914 to 93514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,556 DEBUG Processing 327/865 atomic regions from SNP 98055 to 98655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,622 DEBUG Processing 264/476 atomic regions from SNP 79033 to 79633 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,651 DEBUG Processing 230/1140 atomic regions from SNP 68758 to 69358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,699 DEBUG Processing 103/653 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,737 DEBUG Processing 311/909 atomic regions from SNP 93214 to 93814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,740 DEBUG Processing 251/1032 atomic regions from SNP 75123 to 75723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,804 DEBUG Processing 328/865 atomic regions from SNP 98355 to 98955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,840 DEBUG Processing 265/476 atomic regions from SNP 79333 to 79933 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,917 DEBUG Processing 231/1140 atomic regions from SNP 69058 to 69658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,958 DEBUG Processing 104/653 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,997 DEBUG Processing 312/909 atomic regions from SNP 93514 to 94114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,006 DEBUG Processing 252/1032 atomic regions from SNP 75423 to 76023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,057 DEBUG Processing 329/865 atomic regions from SNP 98655 to 99255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,071 DEBUG Processing 266/476 atomic regions from SNP 79633 to 80233 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:59,187 DEBUG Processing 232/1140 atomic regions from SNP 69358 to 69958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,198 DEBUG Processing 105/653 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,257 DEBUG Processing 313/909 atomic regions from SNP 93814 to 94414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,275 DEBUG Processing 253/1032 atomic regions from SNP 75723 to 76323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,315 DEBUG Processing 267/476 atomic regions from SNP 79933 to 80533 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:59,318 DEBUG Processing 330/865 atomic regions from SNP 98955 to 99555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,441 DEBUG Processing 106/653 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,462 DEBUG Processing 233/1140 atomic regions from SNP 69658 to 70258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,521 DEBUG Processing 314/909 atomic regions from SNP 94114 to 94714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,552 DEBUG Processing 254/1032 atomic regions from SNP 76023 to 76623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,571 DEBUG Processing 268/476 atomic regions from SNP 80233 to 80833 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:59,585 DEBUG Processing 331/865 atomic regions from SNP 99255 to 99855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,680 DEBUG Processing 107/653 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,731 DEBUG Processing 234/1140 atomic regions from SNP 69958 to 70558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,774 DEBUG Processing 315/909 atomic regions from SNP 94414 to 95014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,818 DEBUG Processing 269/476 atomic regions from SNP 80533 to 81133 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:59,830 DEBUG Processing 255/1032 atomic regions from SNP 76323 to 76923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,848 DEBUG Processing 332/865 atomic regions from SNP 99555 to 100155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,928 DEBUG Processing 108/653 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,016 DEBUG Processing 235/1140 atomic regions from SNP 70258 to 70858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,021 DEBUG Processing 316/909 atomic regions from SNP 94714 to 95314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,099 DEBUG Processing 270/476 atomic regions from SNP 80833 to 81433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:00,146 DEBUG Processing 333/865 atomic regions from SNP 99855 to 100455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,154 DEBUG Processing 256/1032 atomic regions from SNP 76623 to 77223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,236 DEBUG Processing 109/653 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,269 DEBUG Processing 317/909 atomic regions from SNP 95014 to 95614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,303 DEBUG Processing 236/1140 atomic regions from SNP 70558 to 71158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,337 DEBUG Processing 271/476 atomic regions from SNP 81133 to 81733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:00,448 DEBUG Processing 334/865 atomic regions from SNP 100155 to 100755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,476 DEBUG Processing 257/1032 atomic regions from SNP 76923 to 77523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,608 DEBUG Processing 110/653 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,625 DEBUG Processing 318/909 atomic regions from SNP 95314 to 95914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,666 DEBUG Processing 272/476 atomic regions from SNP 81433 to 82033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:00,680 DEBUG Processing 237/1140 atomic regions from SNP 70858 to 71458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,795 DEBUG Processing 335/865 atomic regions from SNP 100455 to 101055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,839 DEBUG Processing 258/1032 atomic regions from SNP 77223 to 77823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,998 DEBUG Processing 273/476 atomic regions from SNP 81733 to 82333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:00,998 DEBUG Processing 111/653 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,004 DEBUG Processing 319/909 atomic regions from SNP 95614 to 96214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,061 DEBUG Processing 238/1140 atomic regions from SNP 71158 to 71758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,092 DEBUG Processing 336/865 atomic regions from SNP 100755 to 101355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,143 DEBUG Processing 259/1032 atomic regions from SNP 77523 to 78123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,329 DEBUG Processing 274/476 atomic regions from SNP 82033 to 82633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,351 DEBUG Processing 112/653 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,356 DEBUG Processing 320/909 atomic regions from SNP 95914 to 96514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,396 DEBUG Processing 337/865 atomic regions from SNP 101055 to 101655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,411 DEBUG Processing 239/1140 atomic regions from SNP 71458 to 72058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,450 DEBUG Processing 260/1032 atomic regions from SNP 77823 to 78423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,561 DEBUG Processing 275/476 atomic regions from SNP 82333 to 82933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,597 DEBUG Processing 113/653 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,611 DEBUG Processing 321/909 atomic regions from SNP 96214 to 96814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,666 DEBUG Processing 338/865 atomic regions from SNP 101355 to 101955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,705 DEBUG Processing 240/1140 atomic regions from SNP 71758 to 72358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,749 DEBUG Processing 261/1032 atomic regions from SNP 78123 to 78723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,820 DEBUG Processing 276/476 atomic regions from SNP 82633 to 83233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,859 DEBUG Processing 114/653 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,922 DEBUG Processing 322/909 atomic regions from SNP 96514 to 97114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,032 DEBUG Processing 339/865 atomic regions from SNP 101655 to 102255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,094 DEBUG Processing 241/1140 atomic regions from SNP 72058 to 72658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,132 DEBUG Processing 262/1032 atomic regions from SNP 78423 to 79023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,179 DEBUG Processing 277/476 atomic regions from SNP 82933 to 83533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:02,202 DEBUG Processing 115/653 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,263 DEBUG Processing 323/909 atomic regions from SNP 96814 to 97414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,430 DEBUG Processing 340/865 atomic regions from SNP 101955 to 102555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,566 DEBUG Processing 242/1140 atomic regions from SNP 72358 to 72958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,603 DEBUG Processing 278/476 atomic regions from SNP 83233 to 83833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:02,605 DEBUG Processing 263/1032 atomic regions from SNP 78723 to 79323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,606 DEBUG Processing 116/653 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,696 DEBUG Processing 324/909 atomic regions from SNP 97114 to 97714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,824 DEBUG Processing 341/865 atomic regions from SNP 102255 to 102855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,078 DEBUG Processing 279/476 atomic regions from SNP 83533 to 84133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,082 DEBUG Processing 264/1032 atomic regions from SNP 79023 to 79623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,086 DEBUG Processing 117/653 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,087 DEBUG Processing 243/1140 atomic regions from SNP 72658 to 73258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,142 DEBUG Processing 325/909 atomic regions from SNP 97414 to 98014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,175 DEBUG Processing 342/865 atomic regions from SNP 102555 to 103155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,345 DEBUG Processing 280/476 atomic regions from SNP 83833 to 84433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,366 DEBUG Processing 118/653 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,375 DEBUG Processing 265/1032 atomic regions from SNP 79323 to 79923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,394 DEBUG Processing 244/1140 atomic regions from SNP 72958 to 73558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,429 DEBUG Processing 326/909 atomic regions from SNP 97714 to 98314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,454 DEBUG Processing 343/865 atomic regions from SNP 102855 to 103455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,630 DEBUG Processing 281/476 atomic regions from SNP 84133 to 84733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,689 DEBUG Processing 119/653 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,739 DEBUG Processing 266/1032 atomic regions from SNP 79623 to 80223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,757 DEBUG Processing 245/1140 atomic regions from SNP 73258 to 73858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,792 DEBUG Processing 344/865 atomic regions from SNP 103155 to 103755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,807 DEBUG Processing 327/909 atomic regions from SNP 98014 to 98614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,926 DEBUG Processing 282/476 atomic regions from SNP 84433 to 85033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:04,101 DEBUG Processing 120/653 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,189 DEBUG Processing 267/1032 atomic regions from SNP 79923 to 80523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,207 DEBUG Processing 345/865 atomic regions from SNP 103455 to 104055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,210 DEBUG Processing 246/1140 atomic regions from SNP 73558 to 74158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,228 DEBUG Processing 328/909 atomic regions from SNP 98314 to 98914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,256 DEBUG Processing 283/476 atomic regions from SNP 84733 to 85333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:04,560 DEBUG Processing 121/653 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,704 DEBUG Processing 346/865 atomic regions from SNP 103755 to 104355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,704 DEBUG Processing 268/1032 atomic regions from SNP 80223 to 80823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,764 DEBUG Processing 247/1140 atomic regions from SNP 73858 to 74458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,784 DEBUG Processing 329/909 atomic regions from SNP 98614 to 99214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,790 DEBUG Processing 284/476 atomic regions from SNP 85033 to 85633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:05,058 DEBUG Processing 122/653 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,184 DEBUG Processing 347/865 atomic regions from SNP 104055 to 104655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,205 DEBUG Processing 269/1032 atomic regions from SNP 80523 to 81123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,355 DEBUG Processing 285/476 atomic regions from SNP 85333 to 85933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:05,376 DEBUG Processing 330/909 atomic regions from SNP 98914 to 99514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,392 DEBUG Processing 248/1140 atomic regions from SNP 74158 to 74758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,599 DEBUG Processing 123/653 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,753 DEBUG Processing 348/865 atomic regions from SNP 104355 to 104955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,861 DEBUG Processing 270/1032 atomic regions from SNP 80823 to 81423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,896 DEBUG Processing 286/476 atomic regions from SNP 85633 to 86233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:05,926 DEBUG Processing 331/909 atomic regions from SNP 99214 to 99814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,990 DEBUG Processing 249/1140 atomic regions from SNP 74458 to 75058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,226 DEBUG Processing 124/653 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,345 DEBUG Processing 349/865 atomic regions from SNP 104655 to 105255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,454 DEBUG Processing 287/476 atomic regions from SNP 85933 to 86533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:06,485 DEBUG Processing 271/1032 atomic regions from SNP 81123 to 81723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,518 DEBUG Processing 332/909 atomic regions from SNP 99514 to 100114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,576 DEBUG Processing 250/1140 atomic regions from SNP 74758 to 75358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,588 DEBUG Processing 125/653 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,628 DEBUG Processing 350/865 atomic regions from SNP 104955 to 105555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,798 DEBUG Processing 288/476 atomic regions from SNP 86233 to 86833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:06,844 DEBUG Processing 272/1032 atomic regions from SNP 81423 to 82023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,895 DEBUG Processing 333/909 atomic regions from SNP 99814 to 100414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,938 DEBUG Processing 126/653 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,951 DEBUG Processing 351/865 atomic regions from SNP 105255 to 105855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,972 DEBUG Processing 251/1140 atomic regions from SNP 75058 to 75658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,055 DEBUG Processing 289/476 atomic regions from SNP 86533 to 87133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:07,263 DEBUG Processing 273/1032 atomic regions from SNP 81723 to 82323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,341 DEBUG Processing 334/909 atomic regions from SNP 100114 to 100714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,410 DEBUG Processing 127/653 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,432 DEBUG Processing 352/865 atomic regions from SNP 105555 to 106155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,470 DEBUG Processing 290/476 atomic regions from SNP 86833 to 87433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:07,494 DEBUG Processing 252/1140 atomic regions from SNP 75358 to 75958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,686 DEBUG Processing 274/1032 atomic regions from SNP 82023 to 82623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,769 DEBUG Processing 335/909 atomic regions from SNP 100414 to 101014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,927 DEBUG Processing 128/653 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,011 DEBUG Processing 353/865 atomic regions from SNP 105855 to 106455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,066 DEBUG Processing 291/476 atomic regions from SNP 87133 to 87733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:08,126 DEBUG Processing 253/1140 atomic regions from SNP 75658 to 76258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,205 DEBUG Processing 275/1032 atomic regions from SNP 82323 to 82923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,250 DEBUG Processing 336/909 atomic regions from SNP 100714 to 101314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,427 DEBUG Processing 129/653 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,518 DEBUG Processing 354/865 atomic regions from SNP 106155 to 106755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,570 DEBUG Processing 292/476 atomic regions from SNP 87433 to 88033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:08,639 DEBUG Processing 254/1140 atomic regions from SNP 75958 to 76558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,645 DEBUG Processing 276/1032 atomic regions from SNP 82623 to 83223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,660 DEBUG Processing 337/909 atomic regions from SNP 101014 to 101614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,719 DEBUG Processing 130/653 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,775 DEBUG Processing 355/865 atomic regions from SNP 106455 to 107055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,828 DEBUG Processing 293/476 atomic regions from SNP 87733 to 88333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:08,955 DEBUG Processing 255/1140 atomic regions from SNP 76258 to 76858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,957 DEBUG Processing 277/1032 atomic regions from SNP 82923 to 83523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,966 DEBUG Processing 338/909 atomic regions from SNP 101314 to 101914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,989 DEBUG Processing 131/653 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,073 DEBUG Processing 356/865 atomic regions from SNP 106755 to 107355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,133 DEBUG Processing 294/476 atomic regions from SNP 88033 to 88633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:09,382 DEBUG Processing 278/1032 atomic regions from SNP 83223 to 83823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,382 DEBUG Processing 339/909 atomic regions from SNP 101614 to 102214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,397 DEBUG Processing 132/653 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,401 DEBUG Processing 256/1140 atomic regions from SNP 76558 to 77158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,474 DEBUG Processing 357/865 atomic regions from SNP 107055 to 107655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,495 DEBUG Processing 295/476 atomic regions from SNP 88333 to 88933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:09,912 DEBUG Processing 279/1032 atomic regions from SNP 83523 to 84123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,913 DEBUG Processing 340/909 atomic regions from SNP 101914 to 102514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,926 DEBUG Processing 133/653 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,965 DEBUG Processing 257/1140 atomic regions from SNP 76858 to 77458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,042 DEBUG Processing 358/865 atomic regions from SNP 107355 to 107955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,044 DEBUG Processing 296/476 atomic regions from SNP 88633 to 89233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:10,502 DEBUG Processing 341/909 atomic regions from SNP 102214 to 102814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,511 DEBUG Processing 134/653 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,511 DEBUG Processing 280/1032 atomic regions from SNP 83823 to 84423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,608 DEBUG Processing 258/1140 atomic regions from SNP 77158 to 77758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,678 DEBUG Processing 297/476 atomic regions from SNP 88933 to 89533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:10,688 DEBUG Processing 359/865 atomic regions from SNP 107655 to 108255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,026 DEBUG Processing 342/909 atomic regions from SNP 102514 to 103114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,039 DEBUG Processing 281/1032 atomic regions from SNP 84123 to 84723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,041 DEBUG Processing 135/653 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,162 DEBUG Processing 298/476 atomic regions from SNP 89233 to 89833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:11,172 DEBUG Processing 259/1140 atomic regions from SNP 77458 to 78058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,185 DEBUG Processing 360/865 atomic regions from SNP 107955 to 108555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,476 DEBUG Processing 343/909 atomic regions from SNP 102814 to 103414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,544 DEBUG Processing 282/1032 atomic regions from SNP 84423 to 85023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,559 DEBUG Processing 136/653 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,601 DEBUG Processing 299/476 atomic regions from SNP 89533 to 90133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:11,648 DEBUG Processing 260/1140 atomic regions from SNP 77758 to 78358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,656 DEBUG Processing 361/865 atomic regions from SNP 108255 to 108855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,746 DEBUG Processing 344/909 atomic regions from SNP 103114 to 103714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,839 DEBUG Processing 283/1032 atomic regions from SNP 84723 to 85323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,841 DEBUG Processing 137/653 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,923 DEBUG Processing 300/476 atomic regions from SNP 89833 to 90433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:12,033 DEBUG Processing 362/865 atomic regions from SNP 108555 to 109155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,051 DEBUG Processing 261/1140 atomic regions from SNP 78058 to 78658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,069 DEBUG Processing 345/909 atomic regions from SNP 103414 to 104014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,122 DEBUG Processing 138/653 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,131 DEBUG Processing 284/1032 atomic regions from SNP 85023 to 85623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,197 DEBUG Processing 301/476 atomic regions from SNP 90133 to 90733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:12,452 DEBUG Processing 363/865 atomic regions from SNP 108855 to 109455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,483 DEBUG Processing 346/909 atomic regions from SNP 103714 to 104314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,507 DEBUG Processing 262/1140 atomic regions from SNP 78358 to 78958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,539 DEBUG Processing 139/653 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,560 DEBUG Processing 285/1032 atomic regions from SNP 85323 to 85923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,644 DEBUG Processing 302/476 atomic regions from SNP 90433 to 91033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:12,807 DEBUG Processing 364/865 atomic regions from SNP 109155 to 109755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,833 DEBUG Processing 347/909 atomic regions from SNP 104014 to 104614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,859 DEBUG Processing 140/653 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,866 DEBUG Processing 263/1140 atomic regions from SNP 78658 to 79258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,914 DEBUG Processing 286/1032 atomic regions from SNP 85623 to 86223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,948 DEBUG Processing 303/476 atomic regions from SNP 90733 to 91333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:13,124 DEBUG Processing 365/865 atomic regions from SNP 109455 to 110055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,165 DEBUG Processing 348/909 atomic regions from SNP 104314 to 104914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,263 DEBUG Processing 141/653 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,289 DEBUG Processing 264/1140 atomic regions from SNP 78958 to 79558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,318 DEBUG Processing 304/476 atomic regions from SNP 91033 to 91633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:13,327 DEBUG Processing 287/1032 atomic regions from SNP 85923 to 86523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,490 DEBUG Processing 366/865 atomic regions from SNP 109755 to 110355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,497 DEBUG Processing 349/909 atomic regions from SNP 104614 to 105214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,671 DEBUG Processing 142/653 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,712 DEBUG Processing 305/476 atomic regions from SNP 91333 to 91933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:13,751 DEBUG Processing 265/1140 atomic regions from SNP 79258 to 79858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,753 DEBUG Processing 288/1032 atomic regions from SNP 86223 to 86823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,799 DEBUG Processing 350/909 atomic regions from SNP 104914 to 105514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,810 DEBUG Processing 367/865 atomic regions from SNP 110055 to 110655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,955 DEBUG Processing 143/653 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,007 DEBUG Processing 306/476 atomic regions from SNP 91633 to 92233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,060 DEBUG Processing 289/1032 atomic regions from SNP 86523 to 87123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,074 DEBUG Processing 266/1140 atomic regions from SNP 79558 to 80158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,083 DEBUG Processing 351/909 atomic regions from SNP 105214 to 105814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,085 DEBUG Processing 368/865 atomic regions from SNP 110355 to 110955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,210 DEBUG Processing 144/653 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,263 DEBUG Processing 307/476 atomic regions from SNP 91933 to 92533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,330 DEBUG Processing 290/1032 atomic regions from SNP 86823 to 87423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,348 DEBUG Processing 369/865 atomic regions from SNP 110655 to 111255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,351 DEBUG Processing 352/909 atomic regions from SNP 105514 to 106114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,361 DEBUG Processing 267/1140 atomic regions from SNP 79858 to 80458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,466 DEBUG Processing 145/653 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,526 DEBUG Processing 308/476 atomic regions from SNP 92233 to 92833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,629 DEBUG Processing 291/1032 atomic regions from SNP 87123 to 87723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,636 DEBUG Processing 370/865 atomic regions from SNP 110955 to 111555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,636 DEBUG Processing 353/909 atomic regions from SNP 105814 to 106414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,674 DEBUG Processing 268/1140 atomic regions from SNP 80158 to 80758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,744 DEBUG Processing 146/653 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,806 DEBUG Processing 309/476 atomic regions from SNP 92533 to 93133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,894 DEBUG Processing 371/865 atomic regions from SNP 111255 to 111855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,901 DEBUG Processing 354/909 atomic regions from SNP 106114 to 106714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,907 DEBUG Processing 292/1032 atomic regions from SNP 87423 to 88023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,958 DEBUG Processing 269/1140 atomic regions from SNP 80458 to 81058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,995 DEBUG Processing 147/653 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,055 DEBUG Processing 310/476 atomic regions from SNP 92833 to 93433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,151 DEBUG Processing 372/865 atomic regions from SNP 111555 to 112155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,159 DEBUG Processing 355/909 atomic regions from SNP 106414 to 107014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,172 DEBUG Processing 293/1032 atomic regions from SNP 87723 to 88323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,236 DEBUG Processing 270/1140 atomic regions from SNP 80758 to 81358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,244 DEBUG Processing 148/653 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,303 DEBUG Processing 311/476 atomic regions from SNP 93133 to 93733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,404 DEBUG Processing 373/865 atomic regions from SNP 111855 to 112455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,415 DEBUG Processing 356/909 atomic regions from SNP 106714 to 107314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,433 DEBUG Processing 294/1032 atomic regions from SNP 88023 to 88623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,488 DEBUG Processing 149/653 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,521 DEBUG Processing 271/1140 atomic regions from SNP 81058 to 81658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,545 DEBUG Processing 312/476 atomic regions from SNP 93433 to 94033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,668 DEBUG Processing 374/865 atomic regions from SNP 112155 to 112755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,674 DEBUG Processing 357/909 atomic regions from SNP 107014 to 107614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,702 DEBUG Processing 295/1032 atomic regions from SNP 88323 to 88923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,739 DEBUG Processing 150/653 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,788 DEBUG Processing 313/476 atomic regions from SNP 93733 to 94333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,804 DEBUG Processing 272/1140 atomic regions from SNP 81358 to 81958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,922 DEBUG Processing 375/865 atomic regions from SNP 112455 to 113055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,949 DEBUG Processing 358/909 atomic regions from SNP 107314 to 107914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,971 DEBUG Processing 296/1032 atomic regions from SNP 88623 to 89223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,986 DEBUG Processing 151/653 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,028 DEBUG Processing 314/476 atomic regions from SNP 94033 to 94633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,082 DEBUG Processing 273/1140 atomic regions from SNP 81658 to 82258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,189 DEBUG Processing 376/865 atomic regions from SNP 112755 to 113355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,217 DEBUG Processing 359/909 atomic regions from SNP 107614 to 108214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,254 DEBUG Processing 297/1032 atomic regions from SNP 88923 to 89523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,255 DEBUG Processing 152/653 atomic regions from SNP 45451 to 46052 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,275 DEBUG Processing 315/476 atomic regions from SNP 94333 to 94933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,362 DEBUG Processing 274/1140 atomic regions from SNP 81958 to 82558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,444 DEBUG Processing 377/865 atomic regions from SNP 113055 to 113655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,478 DEBUG Processing 360/909 atomic regions from SNP 107914 to 108514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,509 DEBUG Processing 153/653 atomic regions from SNP 45752 to 46353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,524 DEBUG Processing 298/1032 atomic regions from SNP 89223 to 89823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,531 DEBUG Processing 316/476 atomic regions from SNP 94633 to 95233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,640 DEBUG Processing 275/1140 atomic regions from SNP 82258 to 82858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,696 DEBUG Processing 378/865 atomic regions from SNP 113355 to 113955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,738 DEBUG Processing 361/909 atomic regions from SNP 108214 to 108814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,761 DEBUG Processing 154/653 atomic regions from SNP 46053 to 46654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,791 DEBUG Processing 299/1032 atomic regions from SNP 89523 to 90123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,795 DEBUG Processing 317/476 atomic regions from SNP 94933 to 95533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,915 DEBUG Processing 276/1140 atomic regions from SNP 82558 to 83158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,942 DEBUG Processing 379/865 atomic regions from SNP 113655 to 114255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,991 DEBUG Processing 362/909 atomic regions from SNP 108514 to 109114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,006 DEBUG Processing 155/653 atomic regions from SNP 46354 to 46955 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,055 DEBUG Processing 318/476 atomic regions from SNP 95233 to 95833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,055 DEBUG Processing 300/1032 atomic regions from SNP 89823 to 90423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,187 DEBUG Processing 380/865 atomic regions from SNP 113955 to 114555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,191 DEBUG Processing 277/1140 atomic regions from SNP 82858 to 83458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,249 DEBUG Processing 363/909 atomic regions from SNP 108814 to 109414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,257 DEBUG Processing 156/653 atomic regions from SNP 46655 to 47256 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,317 DEBUG Processing 301/1032 atomic regions from SNP 90123 to 90723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,323 DEBUG Processing 319/476 atomic regions from SNP 95533 to 96133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,431 DEBUG Processing 381/865 atomic regions from SNP 114255 to 114855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,471 DEBUG Processing 278/1140 atomic regions from SNP 83158 to 83758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,506 DEBUG Processing 364/909 atomic regions from SNP 109114 to 109714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,507 DEBUG Processing 157/653 atomic regions from SNP 46956 to 47557 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,574 DEBUG Processing 302/1032 atomic regions from SNP 90423 to 91023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,576 DEBUG Processing 320/476 atomic regions from SNP 95833 to 96433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,669 DEBUG Processing 382/865 atomic regions from SNP 114555 to 115155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,757 DEBUG Processing 279/1140 atomic regions from SNP 83458 to 84058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,760 DEBUG Processing 158/653 atomic regions from SNP 47257 to 47858 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,766 DEBUG Processing 365/909 atomic regions from SNP 109414 to 110014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,828 DEBUG Processing 321/476 atomic regions from SNP 96133 to 96733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,836 DEBUG Processing 303/1032 atomic regions from SNP 90723 to 91323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,907 DEBUG Processing 383/865 atomic regions from SNP 114855 to 115455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,020 DEBUG Processing 159/653 atomic regions from SNP 47558 to 48159 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,030 DEBUG Processing 366/909 atomic regions from SNP 109714 to 110314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,037 DEBUG Processing 280/1140 atomic regions from SNP 83758 to 84358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,100 DEBUG Processing 322/476 atomic regions from SNP 96433 to 97033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,114 DEBUG Processing 304/1032 atomic regions from SNP 91023 to 91623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,150 DEBUG Processing 384/865 atomic regions from SNP 115155 to 115755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,269 DEBUG Processing 160/653 atomic regions from SNP 47859 to 48460 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,298 DEBUG Processing 367/909 atomic regions from SNP 110014 to 110614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,318 DEBUG Processing 281/1140 atomic regions from SNP 84058 to 84658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,362 DEBUG Processing 323/476 atomic regions from SNP 96733 to 97333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,391 DEBUG Processing 305/1032 atomic regions from SNP 91323 to 91923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,410 DEBUG Processing 385/865 atomic regions from SNP 115455 to 116055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,517 DEBUG Processing 161/653 atomic regions from SNP 48160 to 48761 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,568 DEBUG Processing 368/909 atomic regions from SNP 110314 to 110914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,605 DEBUG Processing 282/1140 atomic regions from SNP 84358 to 84958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,613 DEBUG Processing 324/476 atomic regions from SNP 97033 to 97633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,660 DEBUG Processing 306/1032 atomic regions from SNP 91623 to 92223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,664 DEBUG Processing 386/865 atomic regions from SNP 115755 to 116355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,759 DEBUG Processing 162/653 atomic regions from SNP 48461 to 49062 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,822 DEBUG Processing 369/909 atomic regions from SNP 110614 to 111214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,856 DEBUG Processing 325/476 atomic regions from SNP 97333 to 97933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,891 DEBUG Processing 283/1140 atomic regions from SNP 84658 to 85258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,920 DEBUG Processing 387/865 atomic regions from SNP 116055 to 116655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,933 DEBUG Processing 307/1032 atomic regions from SNP 91923 to 92523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,997 DEBUG Processing 163/653 atomic regions from SNP 48762 to 49363 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,076 DEBUG Processing 370/909 atomic regions from SNP 110914 to 111514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,093 DEBUG Processing 326/476 atomic regions from SNP 97633 to 98233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,173 DEBUG Processing 388/865 atomic regions from SNP 116355 to 116955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,180 DEBUG Processing 284/1140 atomic regions from SNP 84958 to 85558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,209 DEBUG Processing 308/1032 atomic regions from SNP 92223 to 92823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,246 DEBUG Processing 164/653 atomic regions from SNP 49063 to 49664 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,329 DEBUG Processing 371/909 atomic regions from SNP 111214 to 111814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,333 DEBUG Processing 327/476 atomic regions from SNP 97933 to 98533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,424 DEBUG Processing 389/865 atomic regions from SNP 116655 to 117255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,460 DEBUG Processing 285/1140 atomic regions from SNP 85258 to 85858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,479 DEBUG Processing 309/1032 atomic regions from SNP 92523 to 93123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,493 DEBUG Processing 165/653 atomic regions from SNP 49364 to 49965 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,580 DEBUG Processing 328/476 atomic regions from SNP 98233 to 98833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,580 DEBUG Processing 372/909 atomic regions from SNP 111514 to 112114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,673 DEBUG Processing 390/865 atomic regions from SNP 116955 to 117555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,744 DEBUG Processing 286/1140 atomic regions from SNP 85558 to 86158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,744 DEBUG Processing 166/653 atomic regions from SNP 49665 to 50266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,754 DEBUG Processing 310/1032 atomic regions from SNP 92823 to 93423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,820 DEBUG Processing 329/476 atomic regions from SNP 98533 to 99133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,837 DEBUG Processing 373/909 atomic regions from SNP 111814 to 112414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,923 DEBUG Processing 391/865 atomic regions from SNP 117255 to 117855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,994 DEBUG Processing 167/653 atomic regions from SNP 49966 to 50567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,032 DEBUG Processing 311/1032 atomic regions from SNP 93123 to 93723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,044 DEBUG Processing 287/1140 atomic regions from SNP 85858 to 86458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,058 DEBUG Processing 330/476 atomic regions from SNP 98833 to 99433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,092 DEBUG Processing 374/909 atomic regions from SNP 112114 to 112714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,174 DEBUG Processing 392/865 atomic regions from SNP 117555 to 118155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,240 DEBUG Processing 168/653 atomic regions from SNP 50267 to 50868 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,297 DEBUG Processing 331/476 atomic regions from SNP 99133 to 99733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,317 DEBUG Processing 312/1032 atomic regions from SNP 93423 to 94023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,335 DEBUG Processing 288/1140 atomic regions from SNP 86158 to 86758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,346 DEBUG Processing 375/909 atomic regions from SNP 112414 to 113014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,429 DEBUG Processing 393/865 atomic regions from SNP 117855 to 118455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,491 DEBUG Processing 169/653 atomic regions from SNP 50568 to 51169 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,534 DEBUG Processing 332/476 atomic regions from SNP 99433 to 100033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,587 DEBUG Processing 313/1032 atomic regions from SNP 93723 to 94323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,603 DEBUG Processing 376/909 atomic regions from SNP 112714 to 113314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,619 DEBUG Processing 289/1140 atomic regions from SNP 86458 to 87058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,682 DEBUG Processing 394/865 atomic regions from SNP 118155 to 118755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,745 DEBUG Processing 170/653 atomic regions from SNP 50869 to 51470 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,770 DEBUG Processing 333/476 atomic regions from SNP 99733 to 100333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,856 DEBUG Processing 377/909 atomic regions from SNP 113014 to 113614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,857 DEBUG Processing 314/1032 atomic regions from SNP 94023 to 94623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,911 DEBUG Processing 290/1140 atomic regions from SNP 86758 to 87358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,928 DEBUG Processing 395/865 atomic regions from SNP 118455 to 119055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,993 DEBUG Processing 171/653 atomic regions from SNP 51170 to 51771 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,008 DEBUG Processing 334/476 atomic regions from SNP 100033 to 100633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,116 DEBUG Processing 378/909 atomic regions from SNP 113314 to 113914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,127 DEBUG Processing 315/1032 atomic regions from SNP 94323 to 94923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,169 DEBUG Processing 396/865 atomic regions from SNP 118755 to 119355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,203 DEBUG Processing 291/1140 atomic regions from SNP 87058 to 87658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,240 DEBUG Processing 172/653 atomic regions from SNP 51471 to 52072 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,248 DEBUG Processing 335/476 atomic regions from SNP 100333 to 100933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,368 DEBUG Processing 379/909 atomic regions from SNP 113614 to 114214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,394 DEBUG Processing 316/1032 atomic regions from SNP 94623 to 95223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,409 DEBUG Processing 397/865 atomic regions from SNP 119055 to 119655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,481 DEBUG Processing 292/1140 atomic regions from SNP 87358 to 87958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,484 DEBUG Processing 336/476 atomic regions from SNP 100633 to 101233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,487 DEBUG Processing 173/653 atomic regions from SNP 51772 to 52373 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,618 DEBUG Processing 380/909 atomic regions from SNP 113914 to 114514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,652 DEBUG Processing 398/865 atomic regions from SNP 119355 to 119955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,660 DEBUG Processing 317/1032 atomic regions from SNP 94923 to 95523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,716 DEBUG Processing 337/476 atomic regions from SNP 100933 to 101533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,728 DEBUG Processing 174/653 atomic regions from SNP 52073 to 52674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,755 DEBUG Processing 293/1140 atomic regions from SNP 87658 to 88258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,870 DEBUG Processing 381/909 atomic regions from SNP 114214 to 114814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,899 DEBUG Processing 399/865 atomic regions from SNP 119655 to 120255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,920 DEBUG Processing 318/1032 atomic regions from SNP 95223 to 95823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,950 DEBUG Processing 338/476 atomic regions from SNP 101233 to 101833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,967 DEBUG Processing 175/653 atomic regions from SNP 52374 to 52975 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,030 DEBUG Processing 294/1140 atomic regions from SNP 87958 to 88558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,119 DEBUG Processing 382/909 atomic regions from SNP 114514 to 115114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,147 DEBUG Processing 400/865 atomic regions from SNP 119955 to 120555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,183 DEBUG Processing 319/1032 atomic regions from SNP 95523 to 96123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,187 DEBUG Processing 339/476 atomic regions from SNP 101533 to 102133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,211 DEBUG Processing 176/653 atomic regions from SNP 52675 to 53276 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,311 DEBUG Processing 295/1140 atomic regions from SNP 88258 to 88858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,370 DEBUG Processing 383/909 atomic regions from SNP 114814 to 115414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,392 DEBUG Processing 401/865 atomic regions from SNP 120255 to 120855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,423 DEBUG Processing 340/476 atomic regions from SNP 101833 to 102433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,441 DEBUG Processing 320/1032 atomic regions from SNP 95823 to 96423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,453 DEBUG Processing 177/653 atomic regions from SNP 52976 to 53577 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,589 DEBUG Processing 296/1140 atomic regions from SNP 88558 to 89158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,617 DEBUG Processing 384/909 atomic regions from SNP 115114 to 115714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,644 DEBUG Processing 402/865 atomic regions from SNP 120555 to 121155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,657 DEBUG Processing 341/476 atomic regions from SNP 102133 to 102733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,696 DEBUG Processing 178/653 atomic regions from SNP 53277 to 53878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,702 DEBUG Processing 321/1032 atomic regions from SNP 96123 to 96723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,863 DEBUG Processing 297/1140 atomic regions from SNP 88858 to 89458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,868 DEBUG Processing 385/909 atomic regions from SNP 115414 to 116014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,896 DEBUG Processing 342/476 atomic regions from SNP 102433 to 103033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,897 DEBUG Processing 403/865 atomic regions from SNP 120855 to 121455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,944 DEBUG Processing 179/653 atomic regions from SNP 53578 to 54179 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,967 DEBUG Processing 322/1032 atomic regions from SNP 96423 to 97023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,119 DEBUG Processing 386/909 atomic regions from SNP 115714 to 116314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,132 DEBUG Processing 298/1140 atomic regions from SNP 89158 to 89758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,138 DEBUG Processing 343/476 atomic regions from SNP 102733 to 103333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,166 DEBUG Processing 404/865 atomic regions from SNP 121155 to 121755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,195 DEBUG Processing 180/653 atomic regions from SNP 53879 to 54480 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,236 DEBUG Processing 323/1032 atomic regions from SNP 96723 to 97323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,373 DEBUG Processing 387/909 atomic regions from SNP 116014 to 116614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,388 DEBUG Processing 344/476 atomic regions from SNP 103033 to 103633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,403 DEBUG Processing 299/1140 atomic regions from SNP 89458 to 90058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,437 DEBUG Processing 405/865 atomic regions from SNP 121455 to 122055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,449 DEBUG Processing 181/653 atomic regions from SNP 54180 to 54781 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,503 DEBUG Processing 324/1032 atomic regions from SNP 97023 to 97623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,627 DEBUG Processing 388/909 atomic regions from SNP 116314 to 116914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,647 DEBUG Processing 345/476 atomic regions from SNP 103333 to 103933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,675 DEBUG Processing 300/1140 atomic regions from SNP 89758 to 90358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,702 DEBUG Processing 182/653 atomic regions from SNP 54481 to 55082 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,711 DEBUG Processing 406/865 atomic regions from SNP 121755 to 122355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,771 DEBUG Processing 325/1032 atomic regions from SNP 97323 to 97923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,878 DEBUG Processing 389/909 atomic regions from SNP 116614 to 117214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,909 DEBUG Processing 346/476 atomic regions from SNP 103633 to 104233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,952 DEBUG Processing 301/1140 atomic regions from SNP 90058 to 90658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,956 DEBUG Processing 183/653 atomic regions from SNP 54782 to 55383 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,961 DEBUG Processing 407/865 atomic regions from SNP 122055 to 122655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,034 DEBUG Processing 326/1032 atomic regions from SNP 97623 to 98223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,134 DEBUG Processing 390/909 atomic regions from SNP 116914 to 117514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,175 DEBUG Processing 347/476 atomic regions from SNP 103933 to 104533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,215 DEBUG Processing 184/653 atomic regions from SNP 55083 to 55684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,218 DEBUG Processing 408/865 atomic regions from SNP 122355 to 122955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,231 DEBUG Processing 302/1140 atomic regions from SNP 90358 to 90958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,303 DEBUG Processing 327/1032 atomic regions from SNP 97923 to 98523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,387 DEBUG Processing 391/909 atomic regions from SNP 117214 to 117814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,440 DEBUG Processing 348/476 atomic regions from SNP 104233 to 104833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,474 DEBUG Processing 185/653 atomic regions from SNP 55384 to 55985 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,495 DEBUG Processing 409/865 atomic regions from SNP 122655 to 123255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,504 DEBUG Processing 303/1140 atomic regions from SNP 90658 to 91258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,568 DEBUG Processing 328/1032 atomic regions from SNP 98223 to 98823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,638 DEBUG Processing 392/909 atomic regions from SNP 117514 to 118114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,690 DEBUG Processing 349/476 atomic regions from SNP 104533 to 105133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,733 DEBUG Processing 186/653 atomic regions from SNP 55685 to 56286 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,754 DEBUG Processing 410/865 atomic regions from SNP 122955 to 123555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,791 DEBUG Processing 304/1140 atomic regions from SNP 90958 to 91558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,836 DEBUG Processing 329/1032 atomic regions from SNP 98523 to 99123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,889 DEBUG Processing 393/909 atomic regions from SNP 117814 to 118414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,934 DEBUG Processing 350/476 atomic regions from SNP 104833 to 105433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,987 DEBUG Processing 187/653 atomic regions from SNP 55986 to 56587 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,000 DEBUG Processing 411/865 atomic regions from SNP 123255 to 123855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,092 DEBUG Processing 305/1140 atomic regions from SNP 91258 to 91858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,105 DEBUG Processing 330/1032 atomic regions from SNP 98823 to 99423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,140 DEBUG Processing 394/909 atomic regions from SNP 118114 to 118714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,179 DEBUG Processing 351/476 atomic regions from SNP 105133 to 105733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,240 DEBUG Processing 188/653 atomic regions from SNP 56287 to 56888 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,245 DEBUG Processing 412/865 atomic regions from SNP 123555 to 124155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,372 DEBUG Processing 331/1032 atomic regions from SNP 99123 to 99723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,373 DEBUG Processing 306/1140 atomic regions from SNP 91558 to 92158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,393 DEBUG Processing 395/909 atomic regions from SNP 118414 to 119014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,420 DEBUG Processing 352/476 atomic regions from SNP 105433 to 106033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,489 DEBUG Processing 189/653 atomic regions from SNP 56588 to 57189 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,493 DEBUG Processing 413/865 atomic regions from SNP 123855 to 124455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,637 DEBUG Processing 332/1032 atomic regions from SNP 99423 to 100023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,645 DEBUG Processing 396/909 atomic regions from SNP 118714 to 119314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,648 DEBUG Processing 307/1140 atomic regions from SNP 91858 to 92458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,675 DEBUG Processing 353/476 atomic regions from SNP 105733 to 106333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,741 DEBUG Processing 190/653 atomic regions from SNP 56889 to 57490 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,741 DEBUG Processing 414/865 atomic regions from SNP 124155 to 124755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,893 DEBUG Processing 397/909 atomic regions from SNP 119014 to 119614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,906 DEBUG Processing 333/1032 atomic regions from SNP 99723 to 100323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,924 DEBUG Processing 354/476 atomic regions from SNP 106033 to 106633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,929 DEBUG Processing 308/1140 atomic regions from SNP 92158 to 92758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,996 DEBUG Processing 415/865 atomic regions from SNP 124455 to 125055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,996 DEBUG Processing 191/653 atomic regions from SNP 57190 to 57791 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,145 DEBUG Processing 398/909 atomic regions from SNP 119314 to 119914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,173 DEBUG Processing 334/1032 atomic regions from SNP 100023 to 100623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,186 DEBUG Processing 355/476 atomic regions from SNP 106333 to 106933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,208 DEBUG Processing 309/1140 atomic regions from SNP 92458 to 93058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,251 DEBUG Processing 416/865 atomic regions from SNP 124755 to 125355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,253 DEBUG Processing 192/653 atomic regions from SNP 57491 to 58092 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,401 DEBUG Processing 399/909 atomic regions from SNP 119614 to 120214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,433 DEBUG Processing 356/476 atomic regions from SNP 106633 to 107233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,446 DEBUG Processing 335/1032 atomic regions from SNP 100323 to 100923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,494 DEBUG Processing 310/1140 atomic regions from SNP 92758 to 93358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,508 DEBUG Processing 417/865 atomic regions from SNP 125055 to 125655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,510 DEBUG Processing 193/653 atomic regions from SNP 57792 to 58393 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,657 DEBUG Processing 400/909 atomic regions from SNP 119914 to 120514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,684 DEBUG Processing 357/476 atomic regions from SNP 106933 to 107533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,716 DEBUG Processing 336/1032 atomic regions from SNP 100623 to 101223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,762 DEBUG Processing 418/865 atomic regions from SNP 125355 to 125955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,764 DEBUG Processing 194/653 atomic regions from SNP 58093 to 58694 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,779 DEBUG Processing 311/1140 atomic regions from SNP 93058 to 93658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,919 DEBUG Processing 401/909 atomic regions from SNP 120214 to 120814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,957 DEBUG Processing 358/476 atomic regions from SNP 107233 to 107833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,986 DEBUG Processing 337/1032 atomic regions from SNP 100923 to 101523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,013 DEBUG Processing 195/653 atomic regions from SNP 58394 to 58995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,014 DEBUG Processing 419/865 atomic regions from SNP 125655 to 126255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,056 DEBUG Processing 312/1140 atomic regions from SNP 93358 to 93958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,179 DEBUG Processing 402/909 atomic regions from SNP 120514 to 121114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,230 DEBUG Processing 359/476 atomic regions from SNP 107533 to 108133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,254 DEBUG Processing 338/1032 atomic regions from SNP 101223 to 101823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,266 DEBUG Processing 196/653 atomic regions from SNP 58695 to 59296 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,267 DEBUG Processing 420/865 atomic regions from SNP 125955 to 126555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,330 DEBUG Processing 313/1140 atomic regions from SNP 93658 to 94258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,432 DEBUG Processing 403/909 atomic regions from SNP 120814 to 121414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,482 DEBUG Processing 360/476 atomic regions from SNP 107833 to 108433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,518 DEBUG Processing 339/1032 atomic regions from SNP 101523 to 102123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,519 DEBUG Processing 197/653 atomic regions from SNP 58996 to 59597 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,521 DEBUG Processing 421/865 atomic regions from SNP 126255 to 126855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,600 DEBUG Processing 314/1140 atomic regions from SNP 93958 to 94558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,684 DEBUG Processing 404/909 atomic regions from SNP 121114 to 121714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,743 DEBUG Processing 361/476 atomic regions from SNP 108133 to 108733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,778 DEBUG Processing 198/653 atomic regions from SNP 59297 to 59898 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,780 DEBUG Processing 422/865 atomic regions from SNP 126555 to 127155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,797 DEBUG Processing 340/1032 atomic regions from SNP 101823 to 102423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,871 DEBUG Processing 315/1140 atomic regions from SNP 94258 to 94858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,936 DEBUG Processing 405/909 atomic regions from SNP 121414 to 122014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,009 DEBUG Processing 362/476 atomic regions from SNP 108433 to 109033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,034 DEBUG Processing 199/653 atomic regions from SNP 59598 to 60199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,036 DEBUG Processing 423/865 atomic regions from SNP 126855 to 127455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,063 DEBUG Processing 341/1032 atomic regions from SNP 102123 to 102723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,156 DEBUG Processing 316/1140 atomic regions from SNP 94558 to 95158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,196 DEBUG Processing 406/909 atomic regions from SNP 121714 to 122314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,281 DEBUG Processing 363/476 atomic regions from SNP 108733 to 109333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,285 DEBUG Processing 200/653 atomic regions from SNP 59899 to 60500 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,287 DEBUG Processing 424/865 atomic regions from SNP 127155 to 127755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,320 DEBUG Processing 342/1032 atomic regions from SNP 102423 to 103023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,428 DEBUG Processing 317/1140 atomic regions from SNP 94858 to 95458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,453 DEBUG Processing 407/909 atomic regions from SNP 122014 to 122614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,540 DEBUG Processing 201/653 atomic regions from SNP 60200 to 60801 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,543 DEBUG Processing 425/865 atomic regions from SNP 127455 to 128055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,552 DEBUG Processing 364/476 atomic regions from SNP 109033 to 109633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,578 DEBUG Processing 343/1032 atomic regions from SNP 102723 to 103323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,696 DEBUG Processing 318/1140 atomic regions from SNP 95158 to 95758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,708 DEBUG Processing 408/909 atomic regions from SNP 122314 to 122914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,794 DEBUG Processing 202/653 atomic regions from SNP 60501 to 61102 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,804 DEBUG Processing 426/865 atomic regions from SNP 127755 to 128355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,813 DEBUG Processing 365/476 atomic regions from SNP 109333 to 109933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,839 DEBUG Processing 344/1032 atomic regions from SNP 103023 to 103623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,959 DEBUG Processing 319/1140 atomic regions from SNP 95458 to 96058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,960 DEBUG Processing 409/909 atomic regions from SNP 122614 to 123214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,056 DEBUG Processing 203/653 atomic regions from SNP 60802 to 61403 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,076 DEBUG Processing 366/476 atomic regions from SNP 109633 to 110233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,082 DEBUG Processing 427/865 atomic regions from SNP 128055 to 128655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,112 DEBUG Processing 345/1032 atomic regions from SNP 103323 to 103923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,212 DEBUG Processing 410/909 atomic regions from SNP 122914 to 123514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,222 DEBUG Processing 320/1140 atomic regions from SNP 95758 to 96358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,315 DEBUG Processing 204/653 atomic regions from SNP 61103 to 61704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,340 DEBUG Processing 367/476 atomic regions from SNP 109933 to 110533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,361 DEBUG Processing 428/865 atomic regions from SNP 128355 to 128955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,381 DEBUG Processing 346/1032 atomic regions from SNP 103623 to 104223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,466 DEBUG Processing 411/909 atomic regions from SNP 123214 to 123814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,487 DEBUG Processing 321/1140 atomic regions from SNP 96058 to 96658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,576 DEBUG Processing 205/653 atomic regions from SNP 61404 to 62005 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,594 DEBUG Processing 368/476 atomic regions from SNP 110233 to 110833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,637 DEBUG Processing 429/865 atomic regions from SNP 128655 to 129255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,637 DEBUG Processing 347/1032 atomic regions from SNP 103923 to 104523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,723 DEBUG Processing 412/909 atomic regions from SNP 123514 to 124114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,760 DEBUG Processing 322/1140 atomic regions from SNP 96358 to 96958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,836 DEBUG Processing 206/653 atomic regions from SNP 61705 to 62306 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,847 DEBUG Processing 369/476 atomic regions from SNP 110533 to 111133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,894 DEBUG Processing 348/1032 atomic regions from SNP 104223 to 104823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,903 DEBUG Processing 430/865 atomic regions from SNP 128955 to 129555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,984 DEBUG Processing 413/909 atomic regions from SNP 123814 to 124414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,041 DEBUG Processing 323/1140 atomic regions from SNP 96658 to 97258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,094 DEBUG Processing 207/653 atomic regions from SNP 62006 to 62607 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,111 DEBUG Processing 370/476 atomic regions from SNP 110833 to 111433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,155 DEBUG Processing 349/1032 atomic regions from SNP 104523 to 105123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,162 DEBUG Processing 431/865 atomic regions from SNP 129255 to 129855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,244 DEBUG Processing 414/909 atomic regions from SNP 124114 to 124714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,327 DEBUG Processing 324/1140 atomic regions from SNP 96958 to 97558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,347 DEBUG Processing 208/653 atomic regions from SNP 62307 to 62908 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,387 DEBUG Processing 371/476 atomic regions from SNP 111133 to 111733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,416 DEBUG Processing 432/865 atomic regions from SNP 129555 to 130155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,422 DEBUG Processing 350/1032 atomic regions from SNP 104823 to 105423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,508 DEBUG Processing 415/909 atomic regions from SNP 124414 to 125014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,598 DEBUG Processing 209/653 atomic regions from SNP 62608 to 63209 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,606 DEBUG Processing 325/1140 atomic regions from SNP 97258 to 97858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,648 DEBUG Processing 372/476 atomic regions from SNP 111433 to 112033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,657 DEBUG Processing 433/865 atomic regions from SNP 129855 to 130455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,685 DEBUG Processing 351/1032 atomic regions from SNP 105123 to 105723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,761 DEBUG Processing 416/909 atomic regions from SNP 124714 to 125314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,851 DEBUG Processing 210/653 atomic regions from SNP 62909 to 63510 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,893 DEBUG Processing 326/1140 atomic regions from SNP 97558 to 98158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,898 DEBUG Processing 373/476 atomic regions from SNP 111733 to 112333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,912 DEBUG Processing 434/865 atomic regions from SNP 130155 to 130755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,948 DEBUG Processing 352/1032 atomic regions from SNP 105423 to 106023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,016 DEBUG Processing 417/909 atomic regions from SNP 125014 to 125614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,102 DEBUG Processing 211/653 atomic regions from SNP 63210 to 63811 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,143 DEBUG Processing 374/476 atomic regions from SNP 112033 to 112633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,163 DEBUG Processing 435/865 atomic regions from SNP 130455 to 131055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,187 DEBUG Processing 327/1140 atomic regions from SNP 97858 to 98458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,221 DEBUG Processing 353/1032 atomic regions from SNP 105723 to 106323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,264 DEBUG Processing 418/909 atomic regions from SNP 125314 to 125914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,352 DEBUG Processing 212/653 atomic regions from SNP 63511 to 64112 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,387 DEBUG Processing 375/476 atomic regions from SNP 112333 to 112933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,422 DEBUG Processing 436/865 atomic regions from SNP 130755 to 131355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,477 DEBUG Processing 328/1140 atomic regions from SNP 98158 to 98758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,488 DEBUG Processing 354/1032 atomic regions from SNP 106023 to 106623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,519 DEBUG Processing 419/909 atomic regions from SNP 125614 to 126214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,601 DEBUG Processing 213/653 atomic regions from SNP 63812 to 64413 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,625 DEBUG Processing 376/476 atomic regions from SNP 112633 to 113233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,672 DEBUG Processing 437/865 atomic regions from SNP 131055 to 131655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,751 DEBUG Processing 355/1032 atomic regions from SNP 106323 to 106923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,773 DEBUG Processing 329/1140 atomic regions from SNP 98458 to 99058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,775 DEBUG Processing 420/909 atomic regions from SNP 125914 to 126514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,844 DEBUG Processing 214/653 atomic regions from SNP 64113 to 64714 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,859 DEBUG Processing 377/476 atomic regions from SNP 112933 to 113533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,918 DEBUG Processing 438/865 atomic regions from SNP 131355 to 131955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,013 DEBUG Processing 356/1032 atomic regions from SNP 106623 to 107223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,034 DEBUG Processing 421/909 atomic regions from SNP 126214 to 126814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,069 DEBUG Processing 330/1140 atomic regions from SNP 98758 to 99358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,091 DEBUG Processing 215/653 atomic regions from SNP 64414 to 65015 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,096 DEBUG Processing 378/476 atomic regions from SNP 113233 to 113833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,163 DEBUG Processing 439/865 atomic regions from SNP 131655 to 132255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,278 DEBUG Processing 357/1032 atomic regions from SNP 106923 to 107523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,294 DEBUG Processing 422/909 atomic regions from SNP 126514 to 127114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,336 DEBUG Processing 379/476 atomic regions from SNP 113533 to 114133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,339 DEBUG Processing 216/653 atomic regions from SNP 64715 to 65316 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,374 DEBUG Processing 331/1140 atomic regions from SNP 99058 to 99658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,416 DEBUG Processing 440/865 atomic regions from SNP 131955 to 132555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,541 DEBUG Processing 358/1032 atomic regions from SNP 107223 to 107823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,554 DEBUG Processing 423/909 atomic regions from SNP 126814 to 127414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,580 DEBUG Processing 380/476 atomic regions from SNP 113833 to 114433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,591 DEBUG Processing 217/653 atomic regions from SNP 65016 to 65617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,669 DEBUG Processing 332/1140 atomic regions from SNP 99358 to 99958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,673 DEBUG Processing 441/865 atomic regions from SNP 132255 to 132855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,803 DEBUG Processing 359/1032 atomic regions from SNP 107523 to 108123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,807 DEBUG Processing 424/909 atomic regions from SNP 127114 to 127714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,821 DEBUG Processing 381/476 atomic regions from SNP 114133 to 114733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,843 DEBUG Processing 218/653 atomic regions from SNP 65317 to 65918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,941 DEBUG Processing 442/865 atomic regions from SNP 132555 to 133155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,960 DEBUG Processing 333/1140 atomic regions from SNP 99658 to 100258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,057 DEBUG Processing 382/476 atomic regions from SNP 114433 to 115033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,062 DEBUG Processing 360/1032 atomic regions from SNP 107823 to 108423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,062 DEBUG Processing 425/909 atomic regions from SNP 127414 to 128014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,095 DEBUG Processing 219/653 atomic regions from SNP 65618 to 66219 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,203 DEBUG Processing 443/865 atomic regions from SNP 132855 to 133455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,261 DEBUG Processing 334/1140 atomic regions from SNP 99958 to 100558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,293 DEBUG Processing 383/476 atomic regions from SNP 114733 to 115333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,313 DEBUG Processing 426/909 atomic regions from SNP 127714 to 128314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,328 DEBUG Processing 361/1032 atomic regions from SNP 108123 to 108723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,343 DEBUG Processing 220/653 atomic regions from SNP 65919 to 66520 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,466 DEBUG Processing 444/865 atomic regions from SNP 133155 to 133755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,532 DEBUG Processing 384/476 atomic regions from SNP 115033 to 115633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,557 DEBUG Processing 335/1140 atomic regions from SNP 100258 to 100858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,569 DEBUG Processing 427/909 atomic regions from SNP 128014 to 128614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,588 DEBUG Processing 221/653 atomic regions from SNP 66220 to 66821 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,598 DEBUG Processing 362/1032 atomic regions from SNP 108423 to 109023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,727 DEBUG Processing 445/865 atomic regions from SNP 133455 to 134055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,794 DEBUG Processing 385/476 atomic regions from SNP 115333 to 115933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,828 DEBUG Processing 428/909 atomic regions from SNP 128314 to 128914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,835 DEBUG Processing 222/653 atomic regions from SNP 66521 to 67122 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,840 DEBUG Processing 336/1140 atomic regions from SNP 100558 to 101158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,868 DEBUG Processing 363/1032 atomic regions from SNP 108723 to 109323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,990 DEBUG Processing 446/865 atomic regions from SNP 133755 to 134355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,052 DEBUG Processing 386/476 atomic regions from SNP 115633 to 116233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,088 DEBUG Processing 223/653 atomic regions from SNP 66822 to 67423 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,089 DEBUG Processing 429/909 atomic regions from SNP 128614 to 129214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,117 DEBUG Processing 337/1140 atomic regions from SNP 100858 to 101458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,133 DEBUG Processing 364/1032 atomic regions from SNP 109023 to 109623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,245 DEBUG Processing 447/865 atomic regions from SNP 134055 to 134655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,297 DEBUG Processing 387/476 atomic regions from SNP 115933 to 116533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,345 DEBUG Processing 224/653 atomic regions from SNP 67123 to 67724 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,357 DEBUG Processing 430/909 atomic regions from SNP 128914 to 129514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,397 DEBUG Processing 338/1140 atomic regions from SNP 101158 to 101758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,402 DEBUG Processing 365/1032 atomic regions from SNP 109323 to 109923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,496 DEBUG Processing 448/865 atomic regions from SNP 134355 to 134955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,538 DEBUG Processing 388/476 atomic regions from SNP 116233 to 116833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,602 DEBUG Processing 225/653 atomic regions from SNP 67424 to 68025 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,625 DEBUG Processing 431/909 atomic regions from SNP 129214 to 129814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,676 DEBUG Processing 366/1032 atomic regions from SNP 109623 to 110223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,680 DEBUG Processing 339/1140 atomic regions from SNP 101458 to 102058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,743 DEBUG Processing 449/865 atomic regions from SNP 134655 to 135255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,772 DEBUG Processing 389/476 atomic regions from SNP 116533 to 117133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,859 DEBUG Processing 226/653 atomic regions from SNP 67725 to 68326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,896 DEBUG Processing 432/909 atomic regions from SNP 129514 to 130114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,949 DEBUG Processing 367/1032 atomic regions from SNP 109923 to 110523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,959 DEBUG Processing 340/1140 atomic regions from SNP 101758 to 102358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,992 DEBUG Processing 450/865 atomic regions from SNP 134955 to 135555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,004 DEBUG Processing 390/476 atomic regions from SNP 116833 to 117433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:35,110 DEBUG Processing 227/653 atomic regions from SNP 68026 to 68627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,163 DEBUG Processing 433/909 atomic regions from SNP 129814 to 130414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,216 DEBUG Processing 368/1032 atomic regions from SNP 110223 to 110823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,234 DEBUG Processing 341/1140 atomic regions from SNP 102058 to 102658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,240 DEBUG Processing 391/476 atomic regions from SNP 117133 to 117733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:35,246 DEBUG Processing 451/865 atomic regions from SNP 135255 to 135855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,361 DEBUG Processing 228/653 atomic regions from SNP 68327 to 68928 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,429 DEBUG Processing 434/909 atomic regions from SNP 130114 to 130714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,479 DEBUG Processing 392/476 atomic regions from SNP 117433 to 118033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:35,487 DEBUG Processing 369/1032 atomic regions from SNP 110523 to 111123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,503 DEBUG Processing 452/865 atomic regions from SNP 135555 to 136155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,514 DEBUG Processing 342/1140 atomic regions from SNP 102358 to 102958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,609 DEBUG Processing 229/653 atomic regions from SNP 68628 to 69229 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,692 DEBUG Processing 435/909 atomic regions from SNP 130414 to 131014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,720 DEBUG Processing 393/476 atomic regions from SNP 117733 to 118333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:35,758 DEBUG Processing 370/1032 atomic regions from SNP 110823 to 111423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,760 DEBUG Processing 453/865 atomic regions from SNP 135855 to 136455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,795 DEBUG Processing 343/1140 atomic regions from SNP 102658 to 103258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,861 DEBUG Processing 230/653 atomic regions from SNP 68929 to 69530 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,958 DEBUG Processing 436/909 atomic regions from SNP 130714 to 131314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,963 DEBUG Processing 394/476 atomic regions from SNP 118033 to 118633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:36,017 DEBUG Processing 454/865 atomic regions from SNP 136155 to 136755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,032 DEBUG Processing 371/1032 atomic regions from SNP 111123 to 111723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,076 DEBUG Processing 344/1140 atomic regions from SNP 102958 to 103558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,112 DEBUG Processing 231/653 atomic regions from SNP 69230 to 69831 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,208 DEBUG Processing 395/476 atomic regions from SNP 118333 to 118933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:36,246 DEBUG Processing 437/909 atomic regions from SNP 131014 to 131614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,271 DEBUG Processing 455/865 atomic regions from SNP 136455 to 137055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,309 DEBUG Processing 372/1032 atomic regions from SNP 111423 to 112023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,355 DEBUG Processing 345/1140 atomic regions from SNP 103258 to 103858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,365 DEBUG Processing 232/653 atomic regions from SNP 69531 to 70132 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,452 DEBUG Processing 396/476 atomic regions from SNP 118633 to 119233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:36,504 DEBUG Processing 438/909 atomic regions from SNP 131314 to 131914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,527 DEBUG Processing 456/865 atomic regions from SNP 136755 to 137355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,580 DEBUG Processing 373/1032 atomic regions from SNP 111723 to 112323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,618 DEBUG Processing 233/653 atomic regions from SNP 69832 to 70433 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,639 DEBUG Processing 346/1140 atomic regions from SNP 103558 to 104158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,698 DEBUG Processing 397/476 atomic regions from SNP 118933 to 119533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:36,761 DEBUG Processing 439/909 atomic regions from SNP 131614 to 132214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,776 DEBUG Processing 457/865 atomic regions from SNP 137055 to 137655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,843 DEBUG Processing 374/1032 atomic regions from SNP 112023 to 112623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,877 DEBUG Processing 234/653 atomic regions from SNP 70133 to 70734 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,923 DEBUG Processing 347/1140 atomic regions from SNP 103858 to 104458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,951 DEBUG Processing 398/476 atomic regions from SNP 119233 to 119833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:37,012 DEBUG Processing 440/909 atomic regions from SNP 131914 to 132514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,022 DEBUG Processing 458/865 atomic regions from SNP 137355 to 137955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,100 DEBUG Processing 375/1032 atomic regions from SNP 112323 to 112923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,127 DEBUG Processing 235/653 atomic regions from SNP 70434 to 71035 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,197 DEBUG Processing 348/1140 atomic regions from SNP 104158 to 104758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,201 DEBUG Processing 399/476 atomic regions from SNP 119533 to 120133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:37,264 DEBUG Processing 441/909 atomic regions from SNP 132214 to 132814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,273 DEBUG Processing 459/865 atomic regions from SNP 137655 to 138255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,365 DEBUG Processing 376/1032 atomic regions from SNP 112623 to 113223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,373 DEBUG Processing 236/653 atomic regions from SNP 70735 to 71336 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,449 DEBUG Processing 400/476 atomic regions from SNP 119833 to 120433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:37,466 DEBUG Processing 349/1140 atomic regions from SNP 104458 to 105058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,520 DEBUG Processing 442/909 atomic regions from SNP 132514 to 133114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,527 DEBUG Processing 460/865 atomic regions from SNP 137955 to 138555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,619 DEBUG Processing 237/653 atomic regions from SNP 71036 to 71637 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,624 DEBUG Processing 377/1032 atomic regions from SNP 112923 to 113523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,692 DEBUG Processing 401/476 atomic regions from SNP 120133 to 120733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:37,737 DEBUG Processing 350/1140 atomic regions from SNP 104758 to 105358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,778 DEBUG Processing 443/909 atomic regions from SNP 132814 to 133414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,783 DEBUG Processing 461/865 atomic regions from SNP 138255 to 138855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,868 DEBUG Processing 238/653 atomic regions from SNP 71337 to 71938 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,879 DEBUG Processing 378/1032 atomic regions from SNP 113223 to 113823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,929 DEBUG Processing 402/476 atomic regions from SNP 120433 to 121033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:38,032 DEBUG Processing 351/1140 atomic regions from SNP 105058 to 105658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,035 DEBUG Processing 444/909 atomic regions from SNP 133114 to 133714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,035 DEBUG Processing 462/865 atomic regions from SNP 138555 to 139155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,123 DEBUG Processing 239/653 atomic regions from SNP 71638 to 72239 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,153 DEBUG Processing 379/1032 atomic regions from SNP 113523 to 114123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,168 DEBUG Processing 403/476 atomic regions from SNP 120733 to 121333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:38,296 DEBUG Processing 463/865 atomic regions from SNP 138855 to 139455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,298 DEBUG Processing 445/909 atomic regions from SNP 133414 to 134014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,332 DEBUG Processing 352/1140 atomic regions from SNP 105358 to 105958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,381 DEBUG Processing 240/653 atomic regions from SNP 71939 to 72540 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,407 DEBUG Processing 404/476 atomic regions from SNP 121033 to 121633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:38,420 DEBUG Processing 380/1032 atomic regions from SNP 113823 to 114423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,546 DEBUG Processing 464/865 atomic regions from SNP 139155 to 139755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,550 DEBUG Processing 446/909 atomic regions from SNP 133714 to 134314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,630 DEBUG Processing 353/1140 atomic regions from SNP 105658 to 106258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,638 DEBUG Processing 241/653 atomic regions from SNP 72240 to 72841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,651 DEBUG Processing 405/476 atomic regions from SNP 121333 to 121933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:38,683 DEBUG Processing 381/1032 atomic regions from SNP 114123 to 114723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,792 DEBUG Processing 465/865 atomic regions from SNP 139455 to 140055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,801 DEBUG Processing 447/909 atomic regions from SNP 134014 to 134614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,900 DEBUG Processing 242/653 atomic regions from SNP 72541 to 73142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,903 DEBUG Processing 406/476 atomic regions from SNP 121633 to 122233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:38,923 DEBUG Processing 354/1140 atomic regions from SNP 105958 to 106558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,953 DEBUG Processing 382/1032 atomic regions from SNP 114423 to 115023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,034 DEBUG Processing 466/865 atomic regions from SNP 139755 to 140355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,047 DEBUG Processing 448/909 atomic regions from SNP 134314 to 134914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,151 DEBUG Processing 407/476 atomic regions from SNP 121933 to 122533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:39,154 DEBUG Processing 243/653 atomic regions from SNP 72842 to 73443 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,199 DEBUG Processing 355/1140 atomic regions from SNP 106258 to 106858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,229 DEBUG Processing 383/1032 atomic regions from SNP 114723 to 115323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,277 DEBUG Processing 467/865 atomic regions from SNP 140055 to 140655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,294 DEBUG Processing 449/909 atomic regions from SNP 134614 to 135214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,395 DEBUG Processing 408/476 atomic regions from SNP 122233 to 122833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:39,405 DEBUG Processing 244/653 atomic regions from SNP 73143 to 73744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,488 DEBUG Processing 356/1140 atomic regions from SNP 106558 to 107158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,510 DEBUG Processing 384/1032 atomic regions from SNP 115023 to 115623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,528 DEBUG Processing 468/865 atomic regions from SNP 140355 to 140955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,549 DEBUG Processing 450/909 atomic regions from SNP 134914 to 135514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,641 DEBUG Processing 409/476 atomic regions from SNP 122533 to 123133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:39,659 DEBUG Processing 245/653 atomic regions from SNP 73444 to 74045 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,770 DEBUG Processing 357/1140 atomic regions from SNP 106858 to 107458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,781 DEBUG Processing 469/865 atomic regions from SNP 140655 to 141255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,782 DEBUG Processing 385/1032 atomic regions from SNP 115323 to 115923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,810 DEBUG Processing 451/909 atomic regions from SNP 135214 to 135814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,884 DEBUG Processing 410/476 atomic regions from SNP 122833 to 123433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:39,908 DEBUG Processing 246/653 atomic regions from SNP 73745 to 74346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,040 DEBUG Processing 470/865 atomic regions from SNP 140955 to 141555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,050 DEBUG Processing 358/1140 atomic regions from SNP 107158 to 107758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,056 DEBUG Processing 386/1032 atomic regions from SNP 115623 to 116223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,077 DEBUG Processing 452/909 atomic regions from SNP 135514 to 136114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,128 DEBUG Processing 411/476 atomic regions from SNP 123133 to 123733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:40,155 DEBUG Processing 247/653 atomic regions from SNP 74046 to 74647 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,304 DEBUG Processing 471/865 atomic regions from SNP 141255 to 141855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,334 DEBUG Processing 387/1032 atomic regions from SNP 115923 to 116523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,344 DEBUG Processing 359/1140 atomic regions from SNP 107458 to 108058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,348 DEBUG Processing 453/909 atomic regions from SNP 135814 to 136414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,380 DEBUG Processing 412/476 atomic regions from SNP 123433 to 124033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:40,418 DEBUG Processing 248/653 atomic regions from SNP 74347 to 74948 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,564 DEBUG Processing 472/865 atomic regions from SNP 141555 to 142155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,616 DEBUG Processing 388/1032 atomic regions from SNP 116223 to 116823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,620 DEBUG Processing 454/909 atomic regions from SNP 136114 to 136714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,632 DEBUG Processing 413/476 atomic regions from SNP 123733 to 124333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:40,651 DEBUG Processing 360/1140 atomic regions from SNP 107758 to 108358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,677 DEBUG Processing 249/653 atomic regions from SNP 74648 to 75249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,813 DEBUG Processing 473/865 atomic regions from SNP 141855 to 142455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,877 DEBUG Processing 414/476 atomic regions from SNP 124033 to 124633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:40,882 DEBUG Processing 455/909 atomic regions from SNP 136414 to 137014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,895 DEBUG Processing 389/1032 atomic regions from SNP 116523 to 117123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,928 DEBUG Processing 250/653 atomic regions from SNP 74949 to 75550 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,938 DEBUG Processing 361/1140 atomic regions from SNP 108058 to 108658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,050 DEBUG Processing 474/865 atomic regions from SNP 142155 to 142755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,118 DEBUG Processing 415/476 atomic regions from SNP 124333 to 124933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:41,141 DEBUG Processing 456/909 atomic regions from SNP 136714 to 137314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,169 DEBUG Processing 390/1032 atomic regions from SNP 116823 to 117423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,181 DEBUG Processing 251/653 atomic regions from SNP 75250 to 75851 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,242 DEBUG Processing 362/1140 atomic regions from SNP 108358 to 108958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,287 DEBUG Processing 475/865 atomic regions from SNP 142455 to 143055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,356 DEBUG Processing 416/476 atomic regions from SNP 124633 to 125233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:41,401 DEBUG Processing 457/909 atomic regions from SNP 137014 to 137614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,434 DEBUG Processing 252/653 atomic regions from SNP 75551 to 76152 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,444 DEBUG Processing 391/1032 atomic regions from SNP 117123 to 117723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,530 DEBUG Processing 476/865 atomic regions from SNP 142755 to 143355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,554 DEBUG Processing 363/1140 atomic regions from SNP 108658 to 109258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,593 DEBUG Processing 417/476 atomic regions from SNP 124933 to 125533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:41,664 DEBUG Processing 458/909 atomic regions from SNP 137314 to 137914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,690 DEBUG Processing 253/653 atomic regions from SNP 75852 to 76453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,712 DEBUG Processing 392/1032 atomic regions from SNP 117423 to 118023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,781 DEBUG Processing 477/865 atomic regions from SNP 143055 to 143655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,834 DEBUG Processing 418/476 atomic regions from SNP 125233 to 125833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:41,860 DEBUG Processing 364/1140 atomic regions from SNP 108958 to 109558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,927 DEBUG Processing 459/909 atomic regions from SNP 137614 to 138214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,948 DEBUG Processing 254/653 atomic regions from SNP 76153 to 76754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,985 DEBUG Processing 393/1032 atomic regions from SNP 117723 to 118323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,032 DEBUG Processing 478/865 atomic regions from SNP 143355 to 143955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,071 DEBUG Processing 419/476 atomic regions from SNP 125533 to 126133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:42,154 DEBUG Processing 365/1140 atomic regions from SNP 109258 to 109858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,187 DEBUG Processing 460/909 atomic regions from SNP 137914 to 138514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,198 DEBUG Processing 255/653 atomic regions from SNP 76454 to 77055 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,255 DEBUG Processing 394/1032 atomic regions from SNP 118023 to 118623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,288 DEBUG Processing 479/865 atomic regions from SNP 143655 to 144255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,317 DEBUG Processing 420/476 atomic regions from SNP 125833 to 126433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:42,452 DEBUG Processing 461/909 atomic regions from SNP 138214 to 138814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,454 DEBUG Processing 256/653 atomic regions from SNP 76755 to 77356 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,462 DEBUG Processing 366/1140 atomic regions from SNP 109558 to 110158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,533 DEBUG Processing 395/1032 atomic regions from SNP 118323 to 118923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,538 DEBUG Processing 480/865 atomic regions from SNP 143955 to 144555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,555 DEBUG Processing 421/476 atomic regions from SNP 126133 to 126733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:42,703 DEBUG Processing 257/653 atomic regions from SNP 77056 to 77657 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,709 DEBUG Processing 462/909 atomic regions from SNP 138514 to 139114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,756 DEBUG Processing 367/1140 atomic regions from SNP 109858 to 110458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,783 DEBUG Processing 481/865 atomic regions from SNP 144255 to 144855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,790 DEBUG Processing 422/476 atomic regions from SNP 126433 to 127033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:42,794 DEBUG Processing 396/1032 atomic regions from SNP 118623 to 119223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,949 DEBUG Processing 258/653 atomic regions from SNP 77357 to 77958 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,980 DEBUG Processing 463/909 atomic regions from SNP 138814 to 139414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,027 DEBUG Processing 368/1140 atomic regions from SNP 110158 to 110758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,028 DEBUG Processing 423/476 atomic regions from SNP 126733 to 127333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:43,032 DEBUG Processing 482/865 atomic regions from SNP 144555 to 145155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,062 DEBUG Processing 397/1032 atomic regions from SNP 118923 to 119523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,196 DEBUG Processing 259/653 atomic regions from SNP 77658 to 78259 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,256 DEBUG Processing 464/909 atomic regions from SNP 139114 to 139714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,266 DEBUG Processing 424/476 atomic regions from SNP 127033 to 127633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:43,278 DEBUG Processing 483/865 atomic regions from SNP 144855 to 145455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,300 DEBUG Processing 369/1140 atomic regions from SNP 110458 to 111058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,327 DEBUG Processing 398/1032 atomic regions from SNP 119223 to 119823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,448 DEBUG Processing 260/653 atomic regions from SNP 77959 to 78560 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,507 DEBUG Processing 425/476 atomic regions from SNP 127333 to 127933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:43,529 DEBUG Processing 484/865 atomic regions from SNP 145155 to 145755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,534 DEBUG Processing 465/909 atomic regions from SNP 139414 to 140014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,578 DEBUG Processing 370/1140 atomic regions from SNP 110758 to 111358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,603 DEBUG Processing 399/1032 atomic regions from SNP 119523 to 120123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,694 DEBUG Processing 261/653 atomic regions from SNP 78260 to 78861 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,745 DEBUG Processing 426/476 atomic regions from SNP 127633 to 128233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:43,783 DEBUG Processing 485/865 atomic regions from SNP 145455 to 146055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,814 DEBUG Processing 466/909 atomic regions from SNP 139714 to 140314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,861 DEBUG Processing 371/1140 atomic regions from SNP 111058 to 111658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,898 DEBUG Processing 400/1032 atomic regions from SNP 119823 to 120423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,944 DEBUG Processing 262/653 atomic regions from SNP 78561 to 79162 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,986 DEBUG Processing 427/476 atomic regions from SNP 127933 to 128533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:44,043 DEBUG Processing 486/865 atomic regions from SNP 145755 to 146355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,093 DEBUG Processing 467/909 atomic regions from SNP 140014 to 140614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,152 DEBUG Processing 372/1140 atomic regions from SNP 111358 to 111958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,195 DEBUG Processing 263/653 atomic regions from SNP 78862 to 79463 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,202 DEBUG Processing 401/1032 atomic regions from SNP 120123 to 120723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,226 DEBUG Processing 428/476 atomic regions from SNP 128233 to 128833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:44,299 DEBUG Processing 487/865 atomic regions from SNP 146055 to 146655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,374 DEBUG Processing 468/909 atomic regions from SNP 140314 to 140914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,438 DEBUG Processing 373/1140 atomic regions from SNP 111658 to 112258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,443 DEBUG Processing 264/653 atomic regions from SNP 79163 to 79764 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,465 DEBUG Processing 429/476 atomic regions from SNP 128533 to 129133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:44,484 DEBUG Processing 402/1032 atomic regions from SNP 120423 to 121023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,553 DEBUG Processing 488/865 atomic regions from SNP 146355 to 146955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,634 DEBUG Processing 469/909 atomic regions from SNP 140614 to 141214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,691 DEBUG Processing 265/653 atomic regions from SNP 79464 to 80065 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,709 DEBUG Processing 430/476 atomic regions from SNP 128833 to 129433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:44,720 DEBUG Processing 374/1140 atomic regions from SNP 111958 to 112558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,770 DEBUG Processing 403/1032 atomic regions from SNP 120723 to 121323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,810 DEBUG Processing 489/865 atomic regions from SNP 146655 to 147255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,900 DEBUG Processing 470/909 atomic regions from SNP 140914 to 141514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,945 DEBUG Processing 266/653 atomic regions from SNP 79765 to 80366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,957 DEBUG Processing 431/476 atomic regions from SNP 129133 to 129733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:45,001 DEBUG Processing 375/1140 atomic regions from SNP 112258 to 112858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,048 DEBUG Processing 404/1032 atomic regions from SNP 121023 to 121623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,068 DEBUG Processing 490/865 atomic regions from SNP 146955 to 147555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,161 DEBUG Processing 471/909 atomic regions from SNP 141214 to 141814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,218 DEBUG Processing 267/653 atomic regions from SNP 80066 to 80667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,218 DEBUG Processing 432/476 atomic regions from SNP 129433 to 130033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:45,328 DEBUG Processing 491/865 atomic regions from SNP 147255 to 147855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,331 DEBUG Processing 376/1140 atomic regions from SNP 112558 to 113158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,359 DEBUG Processing 405/1032 atomic regions from SNP 121323 to 121923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,434 DEBUG Processing 472/909 atomic regions from SNP 141514 to 142114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,462 DEBUG Processing 433/476 atomic regions from SNP 129733 to 130333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:45,471 DEBUG Processing 268/653 atomic regions from SNP 80367 to 80968 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,586 DEBUG Processing 492/865 atomic regions from SNP 147555 to 148155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,627 DEBUG Processing 377/1140 atomic regions from SNP 112858 to 113458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,642 DEBUG Processing 406/1032 atomic regions from SNP 121623 to 122223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,704 DEBUG Processing 434/476 atomic regions from SNP 130033 to 130633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:45,707 DEBUG Processing 473/909 atomic regions from SNP 141814 to 142414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,720 DEBUG Processing 269/653 atomic regions from SNP 80668 to 81269 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,839 DEBUG Processing 493/865 atomic regions from SNP 147855 to 148455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,917 DEBUG Processing 378/1140 atomic regions from SNP 113158 to 113758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,928 DEBUG Processing 407/1032 atomic regions from SNP 121923 to 122523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,950 DEBUG Processing 435/476 atomic regions from SNP 130333 to 130933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:45,975 DEBUG Processing 270/653 atomic regions from SNP 80969 to 81570 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,995 DEBUG Processing 474/909 atomic regions from SNP 142114 to 142714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,095 DEBUG Processing 494/865 atomic regions from SNP 148155 to 148755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,187 DEBUG Processing 436/476 atomic regions from SNP 130633 to 131233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:46,201 DEBUG Processing 379/1140 atomic regions from SNP 113458 to 114058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,215 DEBUG Processing 408/1032 atomic regions from SNP 122223 to 122823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,225 DEBUG Processing 271/653 atomic regions from SNP 81270 to 81871 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,276 DEBUG Processing 475/909 atomic regions from SNP 142414 to 143014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,344 DEBUG Processing 495/865 atomic regions from SNP 148455 to 149055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,420 DEBUG Processing 437/476 atomic regions from SNP 130933 to 131533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:46,474 DEBUG Processing 272/653 atomic regions from SNP 81571 to 82172 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,488 DEBUG Processing 380/1140 atomic regions from SNP 113758 to 114358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,509 DEBUG Processing 409/1032 atomic regions from SNP 122523 to 123123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,557 DEBUG Processing 476/909 atomic regions from SNP 142714 to 143314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,593 DEBUG Processing 496/865 atomic regions from SNP 148755 to 149355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,653 DEBUG Processing 438/476 atomic regions from SNP 131233 to 131833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:46,714 DEBUG Processing 273/653 atomic regions from SNP 81872 to 82473 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,778 DEBUG Processing 381/1140 atomic regions from SNP 114058 to 114658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,800 DEBUG Processing 410/1032 atomic regions from SNP 122823 to 123423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,834 DEBUG Processing 477/909 atomic regions from SNP 143014 to 143614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,835 DEBUG Processing 497/865 atomic regions from SNP 149055 to 149655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,890 DEBUG Processing 439/476 atomic regions from SNP 131533 to 132133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:46,960 DEBUG Processing 274/653 atomic regions from SNP 82173 to 82774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,069 DEBUG Processing 382/1140 atomic regions from SNP 114358 to 114958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,086 DEBUG Processing 498/865 atomic regions from SNP 149355 to 149955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,100 DEBUG Processing 478/909 atomic regions from SNP 143314 to 143914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,108 DEBUG Processing 411/1032 atomic regions from SNP 123123 to 123723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,132 DEBUG Processing 440/476 atomic regions from SNP 131833 to 132433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:47,211 DEBUG Processing 275/653 atomic regions from SNP 82474 to 83075 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,332 DEBUG Processing 499/865 atomic regions from SNP 149655 to 150255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,357 DEBUG Processing 383/1140 atomic regions from SNP 114658 to 115258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,368 DEBUG Processing 479/909 atomic regions from SNP 143614 to 144214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,377 DEBUG Processing 441/476 atomic regions from SNP 132133 to 132733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:47,391 DEBUG Processing 412/1032 atomic regions from SNP 123423 to 124023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,462 DEBUG Processing 276/653 atomic regions from SNP 82775 to 83376 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,574 DEBUG Processing 500/865 atomic regions from SNP 149955 to 150555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,616 DEBUG Processing 442/476 atomic regions from SNP 132433 to 133033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:47,631 DEBUG Processing 480/909 atomic regions from SNP 143914 to 144514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,632 DEBUG Processing 384/1140 atomic regions from SNP 114958 to 115558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,670 DEBUG Processing 413/1032 atomic regions from SNP 123723 to 124323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,707 DEBUG Processing 277/653 atomic regions from SNP 83076 to 83677 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,824 DEBUG Processing 501/865 atomic regions from SNP 150255 to 150855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,871 DEBUG Processing 443/476 atomic regions from SNP 132733 to 133333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:47,914 DEBUG Processing 385/1140 atomic regions from SNP 115258 to 115858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,923 DEBUG Processing 481/909 atomic regions from SNP 144214 to 144814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,956 DEBUG Processing 414/1032 atomic regions from SNP 124023 to 124623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,961 DEBUG Processing 278/653 atomic regions from SNP 83377 to 83978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,071 DEBUG Processing 502/865 atomic regions from SNP 150555 to 151155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,121 DEBUG Processing 444/476 atomic regions from SNP 133033 to 133633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:48,202 DEBUG Processing 482/909 atomic regions from SNP 144514 to 145114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,202 DEBUG Processing 386/1140 atomic regions from SNP 115558 to 116158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,220 DEBUG Processing 279/653 atomic regions from SNP 83678 to 84279 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,254 DEBUG Processing 415/1032 atomic regions from SNP 124323 to 124923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,327 DEBUG Processing 503/865 atomic regions from SNP 150855 to 151455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,368 DEBUG Processing 445/476 atomic regions from SNP 133333 to 133933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:48,480 DEBUG Processing 483/909 atomic regions from SNP 144814 to 145414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,483 DEBUG Processing 280/653 atomic regions from SNP 83979 to 84580 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,495 DEBUG Processing 387/1140 atomic regions from SNP 115858 to 116458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,537 DEBUG Processing 416/1032 atomic regions from SNP 124623 to 125223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,577 DEBUG Processing 504/865 atomic regions from SNP 151155 to 151755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,608 DEBUG Processing 446/476 atomic regions from SNP 133633 to 134233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:48,738 DEBUG Processing 281/653 atomic regions from SNP 84280 to 84881 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,743 DEBUG Processing 484/909 atomic regions from SNP 145114 to 145714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,774 DEBUG Processing 388/1140 atomic regions from SNP 116158 to 116758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,816 DEBUG Processing 417/1032 atomic regions from SNP 124923 to 125523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,833 DEBUG Processing 505/865 atomic regions from SNP 151455 to 152055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,852 DEBUG Processing 447/476 atomic regions from SNP 133933 to 134533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:48,994 DEBUG Processing 282/653 atomic regions from SNP 84581 to 85182 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,023 DEBUG Processing 485/909 atomic regions from SNP 145414 to 146014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,055 DEBUG Processing 389/1140 atomic regions from SNP 116458 to 117058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,095 DEBUG Processing 506/865 atomic regions from SNP 151755 to 152355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,097 DEBUG Processing 418/1032 atomic regions from SNP 125223 to 125823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,102 DEBUG Processing 448/476 atomic regions from SNP 134233 to 134833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:49,243 DEBUG Processing 283/653 atomic regions from SNP 84882 to 85483 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,305 DEBUG Processing 486/909 atomic regions from SNP 145714 to 146314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,334 DEBUG Processing 390/1140 atomic regions from SNP 116758 to 117358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,358 DEBUG Processing 449/476 atomic regions from SNP 134533 to 135133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:49,359 DEBUG Processing 507/865 atomic regions from SNP 152055 to 152655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,379 DEBUG Processing 419/1032 atomic regions from SNP 125523 to 126123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,490 DEBUG Processing 284/653 atomic regions from SNP 85183 to 85784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,602 DEBUG Processing 487/909 atomic regions from SNP 146014 to 146614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,610 DEBUG Processing 450/476 atomic regions from SNP 134833 to 135433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:49,613 DEBUG Processing 391/1140 atomic regions from SNP 117058 to 117658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,621 DEBUG Processing 508/865 atomic regions from SNP 152355 to 152955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,656 DEBUG Processing 420/1032 atomic regions from SNP 125823 to 126423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,740 DEBUG Processing 285/653 atomic regions from SNP 85484 to 86085 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,861 DEBUG Processing 451/476 atomic regions from SNP 135133 to 135733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:49,880 DEBUG Processing 509/865 atomic regions from SNP 152655 to 153255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,890 DEBUG Processing 392/1140 atomic regions from SNP 117358 to 117958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,904 DEBUG Processing 488/909 atomic regions from SNP 146314 to 146914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,950 DEBUG Processing 421/1032 atomic regions from SNP 126123 to 126723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,992 DEBUG Processing 286/653 atomic regions from SNP 85785 to 86386 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,111 DEBUG Processing 452/476 atomic regions from SNP 135433 to 136033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:50,140 DEBUG Processing 510/865 atomic regions from SNP 152955 to 153555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,163 DEBUG Processing 393/1140 atomic regions from SNP 117658 to 118258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,209 DEBUG Processing 489/909 atomic regions from SNP 146614 to 147214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,228 DEBUG Processing 422/1032 atomic regions from SNP 126423 to 127023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,246 DEBUG Processing 287/653 atomic regions from SNP 86086 to 86687 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,357 DEBUG Processing 453/476 atomic regions from SNP 135733 to 136333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:50,397 DEBUG Processing 511/865 atomic regions from SNP 153255 to 153855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,444 DEBUG Processing 394/1140 atomic regions from SNP 117958 to 118558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,507 DEBUG Processing 288/653 atomic regions from SNP 86387 to 86988 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,517 DEBUG Processing 490/909 atomic regions from SNP 146914 to 147514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,519 DEBUG Processing 423/1032 atomic regions from SNP 126723 to 127323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,598 DEBUG Processing 454/476 atomic regions from SNP 136033 to 136633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:50,636 DEBUG Processing 512/865 atomic regions from SNP 153555 to 154155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,717 DEBUG Processing 395/1140 atomic regions from SNP 118258 to 118858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,756 DEBUG Processing 289/653 atomic regions from SNP 86688 to 87289 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,810 DEBUG Processing 424/1032 atomic regions from SNP 127023 to 127623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,811 DEBUG Processing 491/909 atomic regions from SNP 147214 to 147814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,839 DEBUG Processing 455/476 atomic regions from SNP 136333 to 136933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:50,881 DEBUG Processing 513/865 atomic regions from SNP 153855 to 154455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,992 DEBUG Processing 396/1140 atomic regions from SNP 118558 to 119158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,004 DEBUG Processing 290/653 atomic regions from SNP 86989 to 87590 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,086 DEBUG Processing 456/476 atomic regions from SNP 136633 to 137233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,087 DEBUG Processing 425/1032 atomic regions from SNP 127323 to 127923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,106 DEBUG Processing 492/909 atomic regions from SNP 147514 to 148114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,151 DEBUG Processing 514/865 atomic regions from SNP 154155 to 154755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,253 DEBUG Processing 291/653 atomic regions from SNP 87290 to 87891 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,279 DEBUG Processing 397/1140 atomic regions from SNP 118858 to 119458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,330 DEBUG Processing 457/476 atomic regions from SNP 136933 to 137533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,356 DEBUG Processing 426/1032 atomic regions from SNP 127623 to 128223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,394 DEBUG Processing 493/909 atomic regions from SNP 147814 to 148414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,410 DEBUG Processing 515/865 atomic regions from SNP 154455 to 155055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,503 DEBUG Processing 292/653 atomic regions from SNP 87591 to 88192 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,571 DEBUG Processing 398/1140 atomic regions from SNP 119158 to 119758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,577 DEBUG Processing 458/476 atomic regions from SNP 137233 to 137833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,630 DEBUG Processing 427/1032 atomic regions from SNP 127923 to 128523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,667 DEBUG Processing 516/865 atomic regions from SNP 154755 to 155355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,683 DEBUG Processing 494/909 atomic regions from SNP 148114 to 148714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,745 DEBUG Processing 293/653 atomic regions from SNP 87892 to 88493 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,819 DEBUG Processing 459/476 atomic regions from SNP 137533 to 138133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,852 DEBUG Processing 399/1140 atomic regions from SNP 119458 to 120058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,895 DEBUG Processing 428/1032 atomic regions from SNP 128223 to 128823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,913 DEBUG Processing 517/865 atomic regions from SNP 155055 to 155655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,968 DEBUG Processing 495/909 atomic regions from SNP 148414 to 149014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,988 DEBUG Processing 294/653 atomic regions from SNP 88193 to 88794 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,063 DEBUG Processing 460/476 atomic regions from SNP 137833 to 138433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,129 DEBUG Processing 400/1140 atomic regions from SNP 119758 to 120358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,157 DEBUG Processing 518/865 atomic regions from SNP 155355 to 155955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,169 DEBUG Processing 429/1032 atomic regions from SNP 128523 to 129123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,233 DEBUG Processing 295/653 atomic regions from SNP 88494 to 89095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,257 DEBUG Processing 496/909 atomic regions from SNP 148714 to 149314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,309 DEBUG Processing 461/476 atomic regions from SNP 138133 to 138733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,399 DEBUG Processing 519/865 atomic regions from SNP 155655 to 156255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,406 DEBUG Processing 401/1140 atomic regions from SNP 120058 to 120658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,440 DEBUG Processing 430/1032 atomic regions from SNP 128823 to 129423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,474 DEBUG Processing 296/653 atomic regions from SNP 88795 to 89396 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,550 DEBUG Processing 497/909 atomic regions from SNP 149014 to 149614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,555 DEBUG Processing 462/476 atomic regions from SNP 138433 to 139033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,643 DEBUG Processing 520/865 atomic regions from SNP 155955 to 156555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,689 DEBUG Processing 402/1140 atomic regions from SNP 120358 to 120958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,711 DEBUG Processing 297/653 atomic regions from SNP 89096 to 89697 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,717 DEBUG Processing 431/1032 atomic regions from SNP 129123 to 129723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,805 DEBUG Processing 463/476 atomic regions from SNP 138733 to 139333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,841 DEBUG Processing 498/909 atomic regions from SNP 149314 to 149914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,897 DEBUG Processing 521/865 atomic regions from SNP 156255 to 156855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,957 DEBUG Processing 298/653 atomic regions from SNP 89397 to 89998 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,974 DEBUG Processing 403/1140 atomic regions from SNP 120658 to 121258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,992 DEBUG Processing 432/1032 atomic regions from SNP 129423 to 130023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,064 DEBUG Processing 464/476 atomic regions from SNP 139033 to 139633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,138 DEBUG Processing 499/909 atomic regions from SNP 149614 to 150214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,149 DEBUG Processing 522/865 atomic regions from SNP 156555 to 157155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,200 DEBUG Processing 299/653 atomic regions from SNP 89698 to 90299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,260 DEBUG Processing 404/1140 atomic regions from SNP 120958 to 121558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,273 DEBUG Processing 433/1032 atomic regions from SNP 129723 to 130323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,313 DEBUG Processing 465/476 atomic regions from SNP 139333 to 139933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,400 DEBUG Processing 523/865 atomic regions from SNP 156855 to 157455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,425 DEBUG Processing 500/909 atomic regions from SNP 149914 to 150514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,445 DEBUG Processing 300/653 atomic regions from SNP 89999 to 90599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,545 DEBUG Processing 405/1140 atomic regions from SNP 121258 to 121858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,548 DEBUG Processing 434/1032 atomic regions from SNP 130023 to 130623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,553 DEBUG Processing 466/476 atomic regions from SNP 139633 to 140233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,646 DEBUG Processing 524/865 atomic regions from SNP 157155 to 157755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,688 DEBUG Processing 301/653 atomic regions from SNP 90299 to 90899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,709 DEBUG Processing 501/909 atomic regions from SNP 150214 to 150814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,790 DEBUG Processing 467/476 atomic regions from SNP 139933 to 140533 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,826 DEBUG Processing 435/1032 atomic regions from SNP 130323 to 130923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,828 DEBUG Processing 406/1140 atomic regions from SNP 121558 to 122158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,888 DEBUG Processing 525/865 atomic regions from SNP 157455 to 158055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,936 DEBUG Processing 302/653 atomic regions from SNP 90599 to 91199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,004 DEBUG Processing 502/909 atomic regions from SNP 150514 to 151114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,041 DEBUG Processing 468/476 atomic regions from SNP 140233 to 140833 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,108 DEBUG Processing 436/1032 atomic regions from SNP 130623 to 131223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,119 DEBUG Processing 407/1140 atomic regions from SNP 121858 to 122458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,136 DEBUG Processing 526/865 atomic regions from SNP 157755 to 158355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,179 DEBUG Processing 303/653 atomic regions from SNP 90899 to 91499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,293 DEBUG Processing 469/476 atomic regions from SNP 140533 to 141133 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,305 DEBUG Processing 503/909 atomic regions from SNP 150814 to 151414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,387 DEBUG Processing 527/865 atomic regions from SNP 158055 to 158655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,411 DEBUG Processing 437/1032 atomic regions from SNP 130923 to 131523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,419 DEBUG Processing 304/653 atomic regions from SNP 91199 to 91799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,434 DEBUG Processing 408/1140 atomic regions from SNP 122158 to 122758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,545 DEBUG Processing 470/476 atomic regions from SNP 140833 to 141433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,604 DEBUG Processing 504/909 atomic regions from SNP 151114 to 151714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,633 DEBUG Processing 528/865 atomic regions from SNP 158355 to 158955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,658 DEBUG Processing 305/653 atomic regions from SNP 91499 to 92099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,708 DEBUG Processing 438/1032 atomic regions from SNP 131223 to 131823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,738 DEBUG Processing 409/1140 atomic regions from SNP 122458 to 123058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,792 DEBUG Processing 471/476 atomic regions from SNP 141133 to 141733 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,878 DEBUG Processing 505/909 atomic regions from SNP 151414 to 152014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,885 DEBUG Processing 529/865 atomic regions from SNP 158655 to 159255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,899 DEBUG Processing 306/653 atomic regions from SNP 91799 to 92399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,979 DEBUG Processing 439/1032 atomic regions from SNP 131523 to 132123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,030 DEBUG Processing 410/1140 atomic regions from SNP 122758 to 123358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,036 DEBUG Processing 472/476 atomic regions from SNP 141433 to 142033 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:55,129 DEBUG Processing 506/909 atomic regions from SNP 151714 to 152314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,137 DEBUG Processing 530/865 atomic regions from SNP 158955 to 159555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,140 DEBUG Processing 307/653 atomic regions from SNP 92099 to 92699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,249 DEBUG Processing 440/1032 atomic regions from SNP 131823 to 132423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,274 DEBUG Processing 473/476 atomic regions from SNP 141733 to 142333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:55,325 DEBUG Processing 411/1140 atomic regions from SNP 123058 to 123658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,385 DEBUG Processing 507/909 atomic regions from SNP 152014 to 152614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,385 DEBUG Processing 308/653 atomic regions from SNP 92399 to 92999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,386 DEBUG Processing 531/865 atomic regions from SNP 159255 to 159855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,510 DEBUG Processing 474/476 atomic regions from SNP 142033 to 142633 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:55,518 DEBUG Processing 441/1032 atomic regions from SNP 132123 to 132723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,622 DEBUG Processing 412/1140 atomic regions from SNP 123358 to 123958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,639 DEBUG Processing 309/653 atomic regions from SNP 92699 to 93299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,644 DEBUG Processing 532/865 atomic regions from SNP 159555 to 160155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,650 DEBUG Processing 508/909 atomic regions from SNP 152314 to 152914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,742 DEBUG Processing 475/476 atomic regions from SNP 142333 to 142933 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:55,784 DEBUG Processing 442/1032 atomic regions from SNP 132423 to 133023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,893 DEBUG Processing 310/653 atomic regions from SNP 92999 to 93599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,902 DEBUG Processing 533/865 atomic regions from SNP 159855 to 160455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,915 DEBUG Processing 413/1140 atomic regions from SNP 123658 to 124258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,916 DEBUG Processing 509/909 atomic regions from SNP 152614 to 153214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,980 DEBUG Processing 476/476 atomic regions from SNP 142633 to 143233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:56,055 DEBUG Processing 443/1032 atomic regions from SNP 132723 to 133323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,115 DEBUG Unique SNPs positions in subchromosome 4: 143234 2025-01-31 09:44:56,155 DEBUG Processing 311/653 atomic regions from SNP 93299 to 93899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,166 DEBUG Processing 534/865 atomic regions from SNP 160155 to 160755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,189 DEBUG Processing 510/909 atomic regions from SNP 152914 to 153514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,203 DEBUG Processing 414/1140 atomic regions from SNP 123958 to 124558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,332 DEBUG Processing 444/1032 atomic regions from SNP 133023 to 133623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,410 DEBUG Processing 312/653 atomic regions from SNP 93599 to 94199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,424 DEBUG Processing 535/865 atomic regions from SNP 160455 to 161055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,453 DEBUG Processing 511/909 atomic regions from SNP 153214 to 153814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,479 DEBUG Processing 415/1140 atomic regions from SNP 124258 to 124858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,603 DEBUG Processing 445/1032 atomic regions from SNP 133323 to 133923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,657 DEBUG Processing 313/653 atomic regions from SNP 93899 to 94499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,679 DEBUG Processing 536/865 atomic regions from SNP 160755 to 161355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,710 DEBUG Processing 512/909 atomic regions from SNP 153514 to 154114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,757 DEBUG Processing 416/1140 atomic regions from SNP 124558 to 125158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,866 DEBUG Processing 446/1032 atomic regions from SNP 133623 to 134223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,902 DEBUG Processing 314/653 atomic regions from SNP 94199 to 94799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,932 DEBUG Processing 537/865 atomic regions from SNP 161055 to 161655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,971 DEBUG Processing 513/909 atomic regions from SNP 153814 to 154414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,040 DEBUG Processing 417/1140 atomic regions from SNP 124858 to 125458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,128 DEBUG Processing 447/1032 atomic regions from SNP 133923 to 134523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,150 DEBUG Processing 315/653 atomic regions from SNP 94499 to 95099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,188 DEBUG Processing 538/865 atomic regions from SNP 161355 to 161955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,240 DEBUG Processing 514/909 atomic regions from SNP 154114 to 154714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,326 DEBUG Processing 418/1140 atomic regions from SNP 125158 to 125758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,398 DEBUG Processing 316/653 atomic regions from SNP 94799 to 95399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,399 DEBUG Processing 448/1032 atomic regions from SNP 134223 to 134823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,445 DEBUG Processing 539/865 atomic regions from SNP 161655 to 162255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,508 DEBUG Processing 515/909 atomic regions from SNP 154414 to 155014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,630 DEBUG Processing 419/1140 atomic regions from SNP 125458 to 126058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,635 DEBUG Subchromosome time: 142.15354457404464, subchromosome SNPs: 143234 2025-01-31 09:44:57,645 DEBUG Processing 317/653 atomic regions from SNP 95099 to 95699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,654 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:57,675 DEBUG Processing 449/1032 atomic regions from SNP 134523 to 135123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,700 DEBUG Processing 540/865 atomic regions from SNP 161955 to 162555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,767 DEBUG Processing 516/909 atomic regions from SNP 154714 to 155314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,893 DEBUG Processing 318/653 atomic regions from SNP 95399 to 95999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,940 DEBUG Processing 420/1140 atomic regions from SNP 125758 to 126358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,952 DEBUG Processing 450/1032 atomic regions from SNP 134823 to 135423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,955 DEBUG Processing 541/865 atomic regions from SNP 162255 to 162855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,021 DEBUG Processing 517/909 atomic regions from SNP 155014 to 155614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,138 DEBUG Processing 319/653 atomic regions from SNP 95699 to 96299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,203 DEBUG Processing 542/865 atomic regions from SNP 162555 to 163155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,223 DEBUG Processing 451/1032 atomic regions from SNP 135123 to 135723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,253 DEBUG Processing 421/1140 atomic regions from SNP 126058 to 126658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,274 DEBUG Processing 518/909 atomic regions from SNP 155314 to 155914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,383 DEBUG Processing 320/653 atomic regions from SNP 95999 to 96599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,459 DEBUG Processing 543/865 atomic regions from SNP 162855 to 163455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,503 DEBUG Processing 452/1032 atomic regions from SNP 135423 to 136023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,534 DEBUG Processing 519/909 atomic regions from SNP 155614 to 156214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,575 DEBUG Processing 422/1140 atomic regions from SNP 126358 to 126958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,629 DEBUG Processing 321/653 atomic regions from SNP 96299 to 96899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,701 DEBUG Processing 544/865 atomic regions from SNP 163155 to 163755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,777 DEBUG Processing 453/1032 atomic regions from SNP 135723 to 136323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,796 DEBUG Processing 520/909 atomic regions from SNP 155914 to 156514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,876 DEBUG Processing 322/653 atomic regions from SNP 96599 to 97199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,885 DEBUG Processing 423/1140 atomic regions from SNP 126658 to 127258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,946 DEBUG Processing 545/865 atomic regions from SNP 163455 to 164055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,059 DEBUG Processing 454/1032 atomic regions from SNP 136023 to 136623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,066 DEBUG Processing 521/909 atomic regions from SNP 156214 to 156814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,132 DEBUG Processing 323/653 atomic regions from SNP 96899 to 97499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,195 DEBUG Processing 546/865 atomic regions from SNP 163755 to 164355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,200 DEBUG Processing 424/1140 atomic regions from SNP 126958 to 127558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,325 DEBUG Processing 522/909 atomic regions from SNP 156514 to 157114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,335 DEBUG Processing 455/1032 atomic regions from SNP 136323 to 136923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,384 DEBUG Processing 324/653 atomic regions from SNP 97199 to 97799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,442 DEBUG Processing 547/865 atomic regions from SNP 164055 to 164655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,508 DEBUG Processing 425/1140 atomic regions from SNP 127258 to 127858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,600 DEBUG Processing 523/909 atomic regions from SNP 156814 to 157414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,613 DEBUG Processing 456/1032 atomic regions from SNP 136623 to 137223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,635 DEBUG Processing 325/653 atomic regions from SNP 97499 to 98099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,688 DEBUG Processing 548/865 atomic regions from SNP 164355 to 164955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,818 DEBUG Processing 426/1140 atomic regions from SNP 127558 to 128158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,891 DEBUG Processing 524/909 atomic regions from SNP 157114 to 157714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,891 DEBUG Processing 326/653 atomic regions from SNP 97799 to 98399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,892 DEBUG Processing 457/1032 atomic regions from SNP 136923 to 137523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,959 DEBUG Processing 549/865 atomic regions from SNP 164655 to 165255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,140 DEBUG Processing 427/1140 atomic regions from SNP 127858 to 128458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,151 DEBUG Processing 327/653 atomic regions from SNP 98099 to 98699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,168 DEBUG Processing 458/1032 atomic regions from SNP 137223 to 137823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,190 DEBUG Processing 525/909 atomic regions from SNP 157414 to 158014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,215 DEBUG Processing 550/865 atomic regions from SNP 164955 to 165555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,398 DEBUG Processing 328/653 atomic regions from SNP 98399 to 98999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,440 DEBUG Processing 459/1032 atomic regions from SNP 137523 to 138123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,457 DEBUG Processing 428/1140 atomic regions from SNP 128158 to 128758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,470 DEBUG Processing 551/865 atomic regions from SNP 165255 to 165855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,481 DEBUG Processing 526/909 atomic regions from SNP 157714 to 158314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,635 DEBUG Processing 329/653 atomic regions from SNP 98699 to 99299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,710 DEBUG Processing 460/1032 atomic regions from SNP 137823 to 138423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,730 DEBUG Processing 552/865 atomic regions from SNP 165555 to 166155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,767 DEBUG Processing 429/1140 atomic regions from SNP 128458 to 129058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,770 DEBUG Processing 527/909 atomic regions from SNP 158014 to 158614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,877 DEBUG Processing 330/653 atomic regions from SNP 98999 to 99599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,982 DEBUG Processing 461/1032 atomic regions from SNP 138123 to 138723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,993 DEBUG Processing 553/865 atomic regions from SNP 165855 to 166455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,054 DEBUG Processing 430/1140 atomic regions from SNP 128758 to 129358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,066 DEBUG Processing 528/909 atomic regions from SNP 158314 to 158914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,120 DEBUG Processing 331/653 atomic regions from SNP 99299 to 99899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,242 DEBUG Processing 554/865 atomic regions from SNP 166155 to 166755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,248 DEBUG Processing 462/1032 atomic regions from SNP 138423 to 139023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,338 DEBUG Processing 431/1140 atomic regions from SNP 129058 to 129658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,364 DEBUG Processing 529/909 atomic regions from SNP 158614 to 159214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,386 DEBUG Processing 332/653 atomic regions from SNP 99599 to 100199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,488 DEBUG Processing 555/865 atomic regions from SNP 166455 to 167055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,515 DEBUG Processing 463/1032 atomic regions from SNP 138723 to 139323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,627 DEBUG Processing 432/1140 atomic regions from SNP 129358 to 129958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,657 DEBUG Processing 530/909 atomic regions from SNP 158914 to 159514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,657 DEBUG Processing 333/653 atomic regions from SNP 99899 to 100499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,734 DEBUG Processing 556/865 atomic regions from SNP 166755 to 167355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,785 DEBUG Processing 464/1032 atomic regions from SNP 139023 to 139623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,913 DEBUG Processing 433/1140 atomic regions from SNP 129658 to 130258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,920 DEBUG Processing 334/653 atomic regions from SNP 100199 to 100799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,954 DEBUG Processing 531/909 atomic regions from SNP 159214 to 159814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,985 DEBUG Processing 557/865 atomic regions from SNP 167055 to 167655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,062 DEBUG Processing 465/1032 atomic regions from SNP 139323 to 139923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,179 DEBUG Processing 335/653 atomic regions from SNP 100499 to 101099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,192 DEBUG Processing 434/1140 atomic regions from SNP 129958 to 130558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,231 DEBUG Processing 558/865 atomic regions from SNP 167355 to 167955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,244 DEBUG Processing 532/909 atomic regions from SNP 159514 to 160114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,334 DEBUG Processing 466/1032 atomic regions from SNP 139623 to 140223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,421 DEBUG Processing 336/653 atomic regions from SNP 100799 to 101399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,470 DEBUG Processing 435/1140 atomic regions from SNP 130258 to 130858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,476 DEBUG Processing 559/865 atomic regions from SNP 167655 to 168255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,531 DEBUG Processing 533/909 atomic regions from SNP 159814 to 160414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,600 DEBUG Processing 467/1032 atomic regions from SNP 139923 to 140523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,660 DEBUG Processing 337/653 atomic regions from SNP 101099 to 101699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,722 DEBUG Processing 560/865 atomic regions from SNP 167955 to 168555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,756 DEBUG Processing 436/1140 atomic regions from SNP 130558 to 131158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,815 DEBUG Processing 534/909 atomic regions from SNP 160114 to 160714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,867 DEBUG Processing 468/1032 atomic regions from SNP 140223 to 140823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,903 DEBUG Processing 338/653 atomic regions from SNP 101399 to 101999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,967 DEBUG Processing 561/865 atomic regions from SNP 168255 to 168855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,037 DEBUG Processing 437/1140 atomic regions from SNP 130858 to 131458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,099 DEBUG Processing 535/909 atomic regions from SNP 160414 to 161014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,144 DEBUG Processing 469/1032 atomic regions from SNP 140523 to 141123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,148 DEBUG Processing 339/653 atomic regions from SNP 101699 to 102299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,210 DEBUG Processing 562/865 atomic regions from SNP 168555 to 169155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,319 DEBUG Processing 438/1140 atomic regions from SNP 131158 to 131758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,389 DEBUG Processing 536/909 atomic regions from SNP 160714 to 161314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,396 DEBUG Processing 340/653 atomic regions from SNP 101999 to 102599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,426 DEBUG Processing 470/1032 atomic regions from SNP 140823 to 141423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,458 DEBUG Processing 563/865 atomic regions from SNP 168855 to 169455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,608 DEBUG Processing 439/1140 atomic regions from SNP 131458 to 132058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,650 DEBUG Processing 341/653 atomic regions from SNP 102299 to 102899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,688 DEBUG Processing 537/909 atomic regions from SNP 161014 to 161614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,703 DEBUG Processing 471/1032 atomic regions from SNP 141123 to 141723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,709 DEBUG Processing 564/865 atomic regions from SNP 169155 to 169755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,899 DEBUG Processing 342/653 atomic regions from SNP 102599 to 103199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,900 DEBUG Processing 440/1140 atomic regions from SNP 131758 to 132358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,961 DEBUG Processing 565/865 atomic regions from SNP 169455 to 170055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,974 DEBUG Processing 472/1032 atomic regions from SNP 141423 to 142023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,975 DEBUG Processing 538/909 atomic regions from SNP 161314 to 161914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,144 DEBUG Processing 343/653 atomic regions from SNP 102899 to 103499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,179 DEBUG Processing 441/1140 atomic regions from SNP 132058 to 132658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,212 DEBUG Processing 566/865 atomic regions from SNP 169755 to 170355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,253 DEBUG Processing 539/909 atomic regions from SNP 161614 to 162214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,259 DEBUG Processing 473/1032 atomic regions from SNP 141723 to 142323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,388 DEBUG Processing 344/653 atomic regions from SNP 103199 to 103799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,456 DEBUG Processing 442/1140 atomic regions from SNP 132358 to 132958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,466 DEBUG Processing 567/865 atomic regions from SNP 170055 to 170655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,538 DEBUG Processing 540/909 atomic regions from SNP 161914 to 162514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,548 DEBUG Processing 474/1032 atomic regions from SNP 142023 to 142623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,630 DEBUG Processing 345/653 atomic regions from SNP 103499 to 104099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,716 DEBUG Processing 568/865 atomic regions from SNP 170355 to 170955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,740 DEBUG Processing 443/1140 atomic regions from SNP 132658 to 133258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,808 DEBUG Processing 541/909 atomic regions from SNP 162214 to 162814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,835 DEBUG Processing 475/1032 atomic regions from SNP 142323 to 142923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,873 DEBUG Processing 346/653 atomic regions from SNP 103799 to 104399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,963 DEBUG Processing 569/865 atomic regions from SNP 170655 to 171255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,032 DEBUG Processing 444/1140 atomic regions from SNP 132958 to 133558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,081 DEBUG Processing 542/909 atomic regions from SNP 162514 to 163114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,121 DEBUG Processing 476/1032 atomic regions from SNP 142623 to 143223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,121 DEBUG Processing 347/653 atomic regions from SNP 104099 to 104699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,208 DEBUG Processing 570/865 atomic regions from SNP 170955 to 171555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,317 DEBUG Processing 445/1140 atomic regions from SNP 133258 to 133858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,365 DEBUG Processing 543/909 atomic regions from SNP 162814 to 163414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,373 DEBUG Processing 348/653 atomic regions from SNP 104399 to 104999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,401 DEBUG Processing 477/1032 atomic regions from SNP 142923 to 143523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,482 DEBUG Processing 571/865 atomic regions from SNP 171255 to 171855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,606 DEBUG Processing 446/1140 atomic regions from SNP 133558 to 134158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,624 DEBUG Processing 349/653 atomic regions from SNP 104699 to 105299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,647 DEBUG Processing 544/909 atomic regions from SNP 163114 to 163714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,683 DEBUG Processing 478/1032 atomic regions from SNP 143223 to 143823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,756 DEBUG Processing 572/865 atomic regions from SNP 171555 to 172155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,869 DEBUG Processing 350/653 atomic regions from SNP 104999 to 105599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,897 DEBUG Processing 447/1140 atomic regions from SNP 133858 to 134458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,932 DEBUG Processing 545/909 atomic regions from SNP 163414 to 164014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,962 DEBUG Processing 479/1032 atomic regions from SNP 143523 to 144123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,027 DEBUG Processing 573/865 atomic regions from SNP 171855 to 172455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,109 DEBUG Processing 351/653 atomic regions from SNP 105299 to 105899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,178 DEBUG Processing 448/1140 atomic regions from SNP 134158 to 134758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,209 DEBUG Processing 546/909 atomic regions from SNP 163714 to 164314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,241 DEBUG Processing 480/1032 atomic regions from SNP 143823 to 144423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,293 DEBUG Processing 574/865 atomic regions from SNP 172155 to 172755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,321 DEBUG Segmenting atomic regions: 2025-01-31 09:45:06,346 DEBUG Processing 352/653 atomic regions from SNP 105599 to 106199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,433 DEBUG Processing 1/235 atomic regions from SNP 0 to 601 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:06,463 DEBUG Processing 449/1140 atomic regions from SNP 134458 to 135058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,481 DEBUG Processing 547/909 atomic regions from SNP 164014 to 164614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,523 DEBUG Processing 481/1032 atomic regions from SNP 144123 to 144723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,535 DEBUG Processing 575/865 atomic regions from SNP 172455 to 173055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,583 DEBUG Processing 353/653 atomic regions from SNP 105899 to 106499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,685 DEBUG Processing 2/235 atomic regions from SNP 301 to 902 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:06,745 DEBUG Processing 548/909 atomic regions from SNP 164314 to 164914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,757 DEBUG Processing 450/1140 atomic regions from SNP 134758 to 135358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,780 DEBUG Processing 576/865 atomic regions from SNP 172755 to 173355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,806 DEBUG Processing 482/1032 atomic regions from SNP 144423 to 145023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,817 DEBUG Processing 354/653 atomic regions from SNP 106199 to 106799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,926 DEBUG Processing 3/235 atomic regions from SNP 602 to 1203 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:07,003 DEBUG Processing 549/909 atomic regions from SNP 164614 to 165214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,027 DEBUG Processing 577/865 atomic regions from SNP 173055 to 173655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,050 DEBUG Processing 451/1140 atomic regions from SNP 135058 to 135658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,058 DEBUG Processing 355/653 atomic regions from SNP 106499 to 107099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,083 DEBUG Processing 483/1032 atomic regions from SNP 144723 to 145323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,163 DEBUG Processing 4/235 atomic regions from SNP 903 to 1504 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:07,263 DEBUG Processing 550/909 atomic regions from SNP 164914 to 165514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,280 DEBUG Processing 578/865 atomic regions from SNP 173355 to 173955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,302 DEBUG Processing 356/653 atomic regions from SNP 106799 to 107399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,340 DEBUG Processing 452/1140 atomic regions from SNP 135358 to 135958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,354 DEBUG Processing 484/1032 atomic regions from SNP 145023 to 145623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,395 DEBUG Processing 5/235 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:07,538 DEBUG Processing 579/865 atomic regions from SNP 173655 to 174255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,540 DEBUG Processing 551/909 atomic regions from SNP 165214 to 165814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,562 DEBUG Processing 357/653 atomic regions from SNP 107099 to 107699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,626 DEBUG Processing 453/1140 atomic regions from SNP 135658 to 136258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,629 DEBUG Processing 485/1032 atomic regions from SNP 145323 to 145923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,642 DEBUG Processing 6/235 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:07,790 DEBUG Processing 580/865 atomic regions from SNP 173955 to 174555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,803 DEBUG Processing 552/909 atomic regions from SNP 165514 to 166114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,818 DEBUG Processing 358/653 atomic regions from SNP 107399 to 107999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,889 DEBUG Processing 7/235 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:07,903 DEBUG Processing 486/1032 atomic regions from SNP 145623 to 146223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,917 DEBUG Processing 454/1140 atomic regions from SNP 135958 to 136558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,041 DEBUG Processing 581/865 atomic regions from SNP 174255 to 174855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,060 DEBUG Processing 553/909 atomic regions from SNP 165814 to 166414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,071 DEBUG Processing 359/653 atomic regions from SNP 107699 to 108299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,142 DEBUG Processing 8/235 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:08,180 DEBUG Processing 487/1032 atomic regions from SNP 145923 to 146523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,206 DEBUG Processing 455/1140 atomic regions from SNP 136258 to 136858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,301 DEBUG Processing 582/865 atomic regions from SNP 174555 to 175155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,316 DEBUG Processing 554/909 atomic regions from SNP 166114 to 166714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,319 DEBUG Processing 360/653 atomic regions from SNP 107999 to 108599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,390 DEBUG Processing 9/235 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:08,453 DEBUG Processing 488/1032 atomic regions from SNP 146223 to 146823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,487 DEBUG Processing 456/1140 atomic regions from SNP 136558 to 137158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,565 DEBUG Processing 361/653 atomic regions from SNP 108299 to 108899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,566 DEBUG Processing 583/865 atomic regions from SNP 174855 to 175455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,572 DEBUG Processing 555/909 atomic regions from SNP 166414 to 167014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,642 DEBUG Processing 10/235 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:08,725 DEBUG Processing 489/1032 atomic regions from SNP 146523 to 147123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,763 DEBUG Processing 457/1140 atomic regions from SNP 136858 to 137458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,813 DEBUG Processing 362/653 atomic regions from SNP 108599 to 109199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,819 DEBUG Processing 584/865 atomic regions from SNP 175155 to 175755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,829 DEBUG Processing 556/909 atomic regions from SNP 166714 to 167314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,890 DEBUG Processing 11/235 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:09,014 DEBUG Processing 490/1032 atomic regions from SNP 146823 to 147423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,040 DEBUG Processing 458/1140 atomic regions from SNP 137158 to 137758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,067 DEBUG Processing 363/653 atomic regions from SNP 108899 to 109499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,076 DEBUG Processing 585/865 atomic regions from SNP 175455 to 176055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,093 DEBUG Processing 557/909 atomic regions from SNP 167014 to 167614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,133 DEBUG Processing 12/235 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:09,318 DEBUG Processing 459/1140 atomic regions from SNP 137458 to 138058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,319 DEBUG Processing 491/1032 atomic regions from SNP 147123 to 147723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,325 DEBUG Processing 364/653 atomic regions from SNP 109199 to 109799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,331 DEBUG Processing 586/865 atomic regions from SNP 175755 to 176355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,368 DEBUG Processing 558/909 atomic regions from SNP 167314 to 167914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,378 DEBUG Processing 13/235 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:09,589 DEBUG Processing 587/865 atomic regions from SNP 176055 to 176655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,592 DEBUG Processing 460/1140 atomic regions from SNP 137758 to 138358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,597 DEBUG Processing 365/653 atomic regions from SNP 109499 to 110099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,617 DEBUG Processing 492/1032 atomic regions from SNP 147423 to 148023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,626 DEBUG Processing 14/235 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:09,662 DEBUG Processing 559/909 atomic regions from SNP 167614 to 168214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,843 DEBUG Processing 588/865 atomic regions from SNP 176355 to 176955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,871 DEBUG Processing 366/653 atomic regions from SNP 109799 to 110399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,872 DEBUG Processing 461/1140 atomic regions from SNP 138058 to 138658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,877 DEBUG Processing 15/235 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:09,909 DEBUG Processing 493/1032 atomic regions from SNP 147723 to 148323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,948 DEBUG Processing 560/909 atomic regions from SNP 167914 to 168514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,096 DEBUG Processing 589/865 atomic regions from SNP 176655 to 177255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,125 DEBUG Processing 16/235 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:10,155 DEBUG Processing 367/653 atomic regions from SNP 110099 to 110699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,159 DEBUG Processing 462/1140 atomic regions from SNP 138358 to 138958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,184 DEBUG Processing 494/1032 atomic regions from SNP 148023 to 148623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,238 DEBUG Processing 561/909 atomic regions from SNP 168214 to 168814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,348 DEBUG Processing 590/865 atomic regions from SNP 176955 to 177555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,364 DEBUG Processing 17/235 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:10,433 DEBUG Processing 368/653 atomic regions from SNP 110399 to 110999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,439 DEBUG Processing 463/1140 atomic regions from SNP 138658 to 139258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,453 DEBUG Processing 495/1032 atomic regions from SNP 148323 to 148923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,528 DEBUG Processing 562/909 atomic regions from SNP 168514 to 169114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,608 DEBUG Processing 18/235 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:10,608 DEBUG Processing 591/865 atomic regions from SNP 177255 to 177855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,701 DEBUG Processing 369/653 atomic regions from SNP 110699 to 111299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,716 DEBUG Processing 464/1140 atomic regions from SNP 138958 to 139558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,722 DEBUG Processing 496/1032 atomic regions from SNP 148623 to 149223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,813 DEBUG Processing 563/909 atomic regions from SNP 168814 to 169414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,860 DEBUG Processing 19/235 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:10,878 DEBUG Processing 592/865 atomic regions from SNP 177555 to 178155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,957 DEBUG Processing 370/653 atomic regions from SNP 110999 to 111599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,991 DEBUG Processing 497/1032 atomic regions from SNP 148923 to 149523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,992 DEBUG Processing 465/1140 atomic regions from SNP 139258 to 139858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,105 DEBUG Processing 564/909 atomic regions from SNP 169114 to 169714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,113 DEBUG Processing 20/235 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:11,151 DEBUG Processing 593/865 atomic regions from SNP 177855 to 178455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,226 DEBUG Processing 371/653 atomic regions from SNP 111299 to 111899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,271 DEBUG Processing 498/1032 atomic regions from SNP 149223 to 149823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,272 DEBUG Processing 466/1140 atomic regions from SNP 139558 to 140158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,365 DEBUG Processing 21/235 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:11,411 DEBUG Processing 565/909 atomic regions from SNP 169414 to 170014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,428 DEBUG Processing 594/865 atomic regions from SNP 178155 to 178755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,508 DEBUG Processing 372/653 atomic regions from SNP 111599 to 112199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,544 DEBUG Processing 499/1032 atomic regions from SNP 149523 to 150123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,552 DEBUG Processing 467/1140 atomic regions from SNP 139858 to 140458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,605 DEBUG Processing 22/235 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:11,685 DEBUG Processing 595/865 atomic regions from SNP 178455 to 179055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,708 DEBUG Processing 566/909 atomic regions from SNP 169714 to 170314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,789 DEBUG Processing 373/653 atomic regions from SNP 111899 to 112499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,818 DEBUG Processing 500/1032 atomic regions from SNP 149823 to 150423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,830 DEBUG Processing 468/1140 atomic regions from SNP 140158 to 140758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,836 DEBUG Processing 23/235 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:11,946 DEBUG Processing 596/865 atomic regions from SNP 178755 to 179355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,991 DEBUG Processing 567/909 atomic regions from SNP 170014 to 170614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,071 DEBUG Processing 374/653 atomic regions from SNP 112199 to 112799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,077 DEBUG Processing 24/235 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:12,098 DEBUG Processing 501/1032 atomic regions from SNP 150123 to 150723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,119 DEBUG Processing 469/1140 atomic regions from SNP 140458 to 141058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,215 DEBUG Processing 597/865 atomic regions from SNP 179055 to 179655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,273 DEBUG Processing 568/909 atomic regions from SNP 170314 to 170914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,325 DEBUG Processing 25/235 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:12,339 DEBUG Processing 375/653 atomic regions from SNP 112499 to 113099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,374 DEBUG Processing 502/1032 atomic regions from SNP 150423 to 151023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,405 DEBUG Processing 470/1140 atomic regions from SNP 140758 to 141358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,456 DEBUG Processing 598/865 atomic regions from SNP 179355 to 179955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,559 DEBUG Processing 569/909 atomic regions from SNP 170614 to 171214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,581 DEBUG Processing 26/235 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:12,606 DEBUG Processing 376/653 atomic regions from SNP 112799 to 113399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,651 DEBUG Processing 503/1032 atomic regions from SNP 150723 to 151323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,690 DEBUG Processing 471/1140 atomic regions from SNP 141058 to 141658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,702 DEBUG Processing 599/865 atomic regions from SNP 179655 to 180255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,830 DEBUG Processing 27/235 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:12,857 DEBUG Processing 570/909 atomic regions from SNP 170914 to 171514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,867 DEBUG Processing 377/653 atomic regions from SNP 113099 to 113699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,924 DEBUG Processing 504/1032 atomic regions from SNP 151023 to 151623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,965 DEBUG Processing 600/865 atomic regions from SNP 179955 to 180555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,988 DEBUG Processing 472/1140 atomic regions from SNP 141358 to 141958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,072 DEBUG Processing 28/235 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:13,118 DEBUG Processing 378/653 atomic regions from SNP 113399 to 113999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,131 DEBUG Processing 571/909 atomic regions from SNP 171214 to 171814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,187 DEBUG Processing 505/1032 atomic regions from SNP 151323 to 151923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,237 DEBUG Processing 601/865 atomic regions from SNP 180255 to 180855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,278 DEBUG Processing 473/1140 atomic regions from SNP 141658 to 142258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,308 DEBUG Processing 29/235 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:13,364 DEBUG Processing 379/653 atomic regions from SNP 113699 to 114299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,392 DEBUG Processing 572/909 atomic regions from SNP 171514 to 172114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,449 DEBUG Processing 506/1032 atomic regions from SNP 151623 to 152223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,502 DEBUG Processing 602/865 atomic regions from SNP 180555 to 181155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,546 DEBUG Processing 30/235 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:13,556 DEBUG Processing 474/1140 atomic regions from SNP 141958 to 142558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,620 DEBUG Processing 380/653 atomic regions from SNP 113999 to 114599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,661 DEBUG Processing 573/909 atomic regions from SNP 171814 to 172414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,715 DEBUG Processing 507/1032 atomic regions from SNP 151923 to 152523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,755 DEBUG Processing 603/865 atomic regions from SNP 180855 to 181455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,784 DEBUG Processing 31/235 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:13,825 DEBUG Processing 475/1140 atomic regions from SNP 142258 to 142858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,861 DEBUG Processing 381/653 atomic regions from SNP 114299 to 114899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,928 DEBUG Processing 574/909 atomic regions from SNP 172114 to 172714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,980 DEBUG Processing 508/1032 atomic regions from SNP 152223 to 152823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,009 DEBUG Processing 604/865 atomic regions from SNP 181155 to 181755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,025 DEBUG Processing 32/235 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:14,096 DEBUG Processing 476/1140 atomic regions from SNP 142558 to 143158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,109 DEBUG Processing 382/653 atomic regions from SNP 114599 to 115199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,212 DEBUG Processing 575/909 atomic regions from SNP 172414 to 173014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,240 DEBUG Processing 509/1032 atomic regions from SNP 152523 to 153123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,257 DEBUG Processing 605/865 atomic regions from SNP 181455 to 182055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,261 DEBUG Processing 33/235 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:14,371 DEBUG Processing 477/1140 atomic regions from SNP 142858 to 143458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,379 DEBUG Processing 383/653 atomic regions from SNP 114899 to 115499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,490 DEBUG Processing 576/909 atomic regions from SNP 172714 to 173314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,498 DEBUG Processing 34/235 atomic regions from SNP 9933 to 10533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:14,503 DEBUG Processing 606/865 atomic regions from SNP 181755 to 182355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,503 DEBUG Processing 510/1032 atomic regions from SNP 152823 to 153423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,629 DEBUG Processing 384/653 atomic regions from SNP 115199 to 115799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,644 DEBUG Processing 478/1140 atomic regions from SNP 143158 to 143758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,740 DEBUG Processing 35/235 atomic regions from SNP 10233 to 10833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:14,754 DEBUG Processing 607/865 atomic regions from SNP 182055 to 182655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,769 DEBUG Processing 511/1032 atomic regions from SNP 153123 to 153723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,771 DEBUG Processing 577/909 atomic regions from SNP 173014 to 173614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,873 DEBUG Processing 385/653 atomic regions from SNP 115499 to 116099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,913 DEBUG Processing 479/1140 atomic regions from SNP 143458 to 144058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,983 DEBUG Processing 36/235 atomic regions from SNP 10533 to 11133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:15,007 DEBUG Processing 608/865 atomic regions from SNP 182355 to 182955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,035 DEBUG Processing 512/1032 atomic regions from SNP 153423 to 154023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,056 DEBUG Processing 578/909 atomic regions from SNP 173314 to 173914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,114 DEBUG Processing 386/653 atomic regions from SNP 115799 to 116399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,184 DEBUG Processing 480/1140 atomic regions from SNP 143758 to 144358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,227 DEBUG Processing 37/235 atomic regions from SNP 10833 to 11433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:15,267 DEBUG Processing 609/865 atomic regions from SNP 182655 to 183255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,300 DEBUG Processing 513/1032 atomic regions from SNP 153723 to 154323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,343 DEBUG Processing 579/909 atomic regions from SNP 173614 to 174214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,354 DEBUG Processing 387/653 atomic regions from SNP 116099 to 116699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,463 DEBUG Processing 481/1140 atomic regions from SNP 144058 to 144658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,467 DEBUG Processing 38/235 atomic regions from SNP 11133 to 11733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:15,538 DEBUG Processing 610/865 atomic regions from SNP 182955 to 183555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,557 DEBUG Processing 514/1032 atomic regions from SNP 154023 to 154623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,596 DEBUG Processing 388/653 atomic regions from SNP 116399 to 116999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,627 DEBUG Processing 580/909 atomic regions from SNP 173914 to 174514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,705 DEBUG Processing 39/235 atomic regions from SNP 11433 to 12033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:15,741 DEBUG Processing 482/1140 atomic regions from SNP 144358 to 144958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,819 DEBUG Processing 515/1032 atomic regions from SNP 154323 to 154923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,819 DEBUG Processing 611/865 atomic regions from SNP 183255 to 183855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,845 DEBUG Processing 389/653 atomic regions from SNP 116699 to 117299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,893 DEBUG Processing 581/909 atomic regions from SNP 174214 to 174814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,937 DEBUG Processing 40/235 atomic regions from SNP 11733 to 12333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:16,016 DEBUG Processing 483/1140 atomic regions from SNP 144658 to 145258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,084 DEBUG Processing 516/1032 atomic regions from SNP 154623 to 155223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,092 DEBUG Processing 612/865 atomic regions from SNP 183555 to 184155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,094 DEBUG Processing 390/653 atomic regions from SNP 116999 to 117599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,161 DEBUG Processing 582/909 atomic regions from SNP 174514 to 175114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,172 DEBUG Processing 41/235 atomic regions from SNP 12033 to 12633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:16,315 DEBUG Processing 484/1140 atomic regions from SNP 144958 to 145558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,343 DEBUG Processing 391/653 atomic regions from SNP 117299 to 117899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,347 DEBUG Processing 517/1032 atomic regions from SNP 154923 to 155523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,362 DEBUG Processing 613/865 atomic regions from SNP 183855 to 184455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,405 DEBUG Processing 42/235 atomic regions from SNP 12333 to 12933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:16,450 DEBUG Processing 583/909 atomic regions from SNP 174814 to 175414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,594 DEBUG Processing 392/653 atomic regions from SNP 117599 to 118199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,609 DEBUG Processing 518/1032 atomic regions from SNP 155223 to 155823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,616 DEBUG Processing 485/1140 atomic regions from SNP 145258 to 145858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,620 DEBUG Processing 614/865 atomic regions from SNP 184155 to 184755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,639 DEBUG Processing 43/235 atomic regions from SNP 12633 to 13233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:16,730 DEBUG Processing 584/909 atomic regions from SNP 175114 to 175714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,848 DEBUG Processing 393/653 atomic regions from SNP 117899 to 118499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,871 DEBUG Processing 519/1032 atomic regions from SNP 155523 to 156123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,876 DEBUG Processing 44/235 atomic regions from SNP 12933 to 13533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:16,888 DEBUG Processing 615/865 atomic regions from SNP 184455 to 185055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,915 DEBUG Processing 486/1140 atomic regions from SNP 145558 to 146158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,015 DEBUG Processing 585/909 atomic regions from SNP 175414 to 176014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,101 DEBUG Processing 394/653 atomic regions from SNP 118199 to 118799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,120 DEBUG Processing 45/235 atomic regions from SNP 13233 to 13833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:17,134 DEBUG Processing 520/1032 atomic regions from SNP 155823 to 156423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,157 DEBUG Processing 616/865 atomic regions from SNP 184755 to 185355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,200 DEBUG Processing 487/1140 atomic regions from SNP 145858 to 146458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,297 DEBUG Processing 586/909 atomic regions from SNP 175714 to 176314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,353 DEBUG Processing 395/653 atomic regions from SNP 118499 to 119099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,368 DEBUG Processing 46/235 atomic regions from SNP 13533 to 14133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:17,401 DEBUG Processing 521/1032 atomic regions from SNP 156123 to 156723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,418 DEBUG Processing 617/865 atomic regions from SNP 185055 to 185655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,485 DEBUG Processing 488/1140 atomic regions from SNP 146158 to 146758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,570 DEBUG Processing 587/909 atomic regions from SNP 176014 to 176614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,603 DEBUG Processing 396/653 atomic regions from SNP 118799 to 119399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,613 DEBUG Processing 47/235 atomic regions from SNP 13833 to 14433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:17,666 DEBUG Processing 522/1032 atomic regions from SNP 156423 to 157023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,680 DEBUG Processing 618/865 atomic regions from SNP 185355 to 185955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,791 DEBUG Processing 489/1140 atomic regions from SNP 146458 to 147058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,845 DEBUG Processing 588/909 atomic regions from SNP 176314 to 176914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,847 DEBUG Processing 397/653 atomic regions from SNP 119099 to 119699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,850 DEBUG Processing 48/235 atomic regions from SNP 14133 to 14733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:17,923 DEBUG Processing 523/1032 atomic regions from SNP 156723 to 157323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,929 DEBUG Processing 619/865 atomic regions from SNP 185655 to 186255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,088 DEBUG Processing 49/235 atomic regions from SNP 14433 to 15033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:18,095 DEBUG Processing 398/653 atomic regions from SNP 119399 to 119999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,108 DEBUG Processing 490/1140 atomic regions from SNP 146758 to 147358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,111 DEBUG Processing 589/909 atomic regions from SNP 176614 to 177214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,175 DEBUG Processing 620/865 atomic regions from SNP 185955 to 186555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,198 DEBUG Processing 524/1032 atomic regions from SNP 157023 to 157623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,331 DEBUG Processing 50/235 atomic regions from SNP 14733 to 15333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:18,352 DEBUG Processing 399/653 atomic regions from SNP 119699 to 120299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,397 DEBUG Processing 590/909 atomic regions from SNP 176914 to 177514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,424 DEBUG Processing 621/865 atomic regions from SNP 186255 to 186855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,427 DEBUG Processing 491/1140 atomic regions from SNP 147058 to 147658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,480 DEBUG Processing 525/1032 atomic regions from SNP 157323 to 157923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,569 DEBUG Processing 51/235 atomic regions from SNP 15033 to 15633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:18,606 DEBUG Processing 400/653 atomic regions from SNP 119999 to 120599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,688 DEBUG Processing 591/909 atomic regions from SNP 177214 to 177814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,699 DEBUG Processing 622/865 atomic regions from SNP 186555 to 187155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,729 DEBUG Processing 492/1140 atomic regions from SNP 147358 to 147958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,765 DEBUG Processing 526/1032 atomic regions from SNP 157623 to 158223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,803 DEBUG Processing 52/235 atomic regions from SNP 15333 to 15933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:18,856 DEBUG Processing 401/653 atomic regions from SNP 120299 to 120899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,973 DEBUG Processing 592/909 atomic regions from SNP 177514 to 178114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,978 DEBUG Processing 623/865 atomic regions from SNP 186855 to 187455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,016 DEBUG Processing 493/1140 atomic regions from SNP 147658 to 148258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,038 DEBUG Processing 53/235 atomic regions from SNP 15633 to 16233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,042 DEBUG Processing 527/1032 atomic regions from SNP 157923 to 158523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,104 DEBUG Processing 402/653 atomic regions from SNP 120599 to 121199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,231 DEBUG Processing 624/865 atomic regions from SNP 187155 to 187755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,260 DEBUG Processing 593/909 atomic regions from SNP 177814 to 178414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,278 DEBUG Processing 54/235 atomic regions from SNP 15933 to 16533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,292 DEBUG Processing 494/1140 atomic regions from SNP 147958 to 148558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,310 DEBUG Processing 528/1032 atomic regions from SNP 158223 to 158823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,352 DEBUG Processing 403/653 atomic regions from SNP 120899 to 121499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,479 DEBUG Processing 625/865 atomic regions from SNP 187455 to 188055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,520 DEBUG Processing 55/235 atomic regions from SNP 16233 to 16833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,530 DEBUG Processing 594/909 atomic regions from SNP 178114 to 178714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,585 DEBUG Processing 529/1032 atomic regions from SNP 158523 to 159123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,598 DEBUG Processing 495/1140 atomic regions from SNP 148258 to 148858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,603 DEBUG Processing 404/653 atomic regions from SNP 121199 to 121799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,725 DEBUG Processing 626/865 atomic regions from SNP 187755 to 188355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,763 DEBUG Processing 56/235 atomic regions from SNP 16533 to 17133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,791 DEBUG Processing 595/909 atomic regions from SNP 178414 to 179014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,850 DEBUG Processing 530/1032 atomic regions from SNP 158823 to 159423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,858 DEBUG Processing 405/653 atomic regions from SNP 121499 to 122099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,900 DEBUG Processing 496/1140 atomic regions from SNP 148558 to 149158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,968 DEBUG Processing 627/865 atomic regions from SNP 188055 to 188655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,997 DEBUG Processing 57/235 atomic regions from SNP 16833 to 17433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,050 DEBUG Processing 596/909 atomic regions from SNP 178714 to 179314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,113 DEBUG Processing 406/653 atomic regions from SNP 121799 to 122399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,140 DEBUG Processing 531/1032 atomic regions from SNP 159123 to 159723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,191 DEBUG Processing 497/1140 atomic regions from SNP 148858 to 149458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,215 DEBUG Processing 628/865 atomic regions from SNP 188355 to 188955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,232 DEBUG Processing 58/235 atomic regions from SNP 17133 to 17733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,304 DEBUG Processing 597/909 atomic regions from SNP 179014 to 179614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,361 DEBUG Processing 407/653 atomic regions from SNP 122099 to 122699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,434 DEBUG Processing 532/1032 atomic regions from SNP 159423 to 160023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,467 DEBUG Processing 629/865 atomic regions from SNP 188655 to 189255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,473 DEBUG Processing 59/235 atomic regions from SNP 17433 to 18033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,495 DEBUG Processing 498/1140 atomic regions from SNP 149158 to 149758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,558 DEBUG Processing 598/909 atomic regions from SNP 179314 to 179914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,604 DEBUG Processing 408/653 atomic regions from SNP 122399 to 122999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,706 DEBUG Processing 533/1032 atomic regions from SNP 159723 to 160323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,718 DEBUG Processing 60/235 atomic regions from SNP 17733 to 18333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,730 DEBUG Processing 630/865 atomic regions from SNP 188955 to 189555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,798 DEBUG Processing 499/1140 atomic regions from SNP 149458 to 150058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,813 DEBUG Processing 599/909 atomic regions from SNP 179614 to 180214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,846 DEBUG Processing 409/653 atomic regions from SNP 122699 to 123299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,957 DEBUG Processing 61/235 atomic regions from SNP 18033 to 18633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,992 DEBUG Processing 534/1032 atomic regions from SNP 160023 to 160623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,995 DEBUG Processing 631/865 atomic regions from SNP 189255 to 189855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,085 DEBUG Processing 600/909 atomic regions from SNP 179914 to 180514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,090 DEBUG Processing 410/653 atomic regions from SNP 122999 to 123599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,100 DEBUG Processing 500/1140 atomic regions from SNP 149758 to 150358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,186 DEBUG Processing 62/235 atomic regions from SNP 18333 to 18933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,268 DEBUG Processing 535/1032 atomic regions from SNP 160323 to 160923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,270 DEBUG Processing 632/865 atomic regions from SNP 189555 to 190155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,339 DEBUG Processing 411/653 atomic regions from SNP 123299 to 123899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,379 DEBUG Processing 601/909 atomic regions from SNP 180214 to 180814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,391 DEBUG Processing 501/1140 atomic regions from SNP 150058 to 150658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,416 DEBUG Processing 63/235 atomic regions from SNP 18633 to 19233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,525 DEBUG Processing 536/1032 atomic regions from SNP 160623 to 161223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,551 DEBUG Processing 633/865 atomic regions from SNP 189855 to 190455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,586 DEBUG Processing 412/653 atomic regions from SNP 123599 to 124199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,651 DEBUG Processing 64/235 atomic regions from SNP 18933 to 19533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,666 DEBUG Processing 602/909 atomic regions from SNP 180514 to 181114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,692 DEBUG Processing 502/1140 atomic regions from SNP 150358 to 150958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,780 DEBUG Processing 537/1032 atomic regions from SNP 160923 to 161523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,831 DEBUG Processing 634/865 atomic regions from SNP 190155 to 190755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,833 DEBUG Processing 413/653 atomic regions from SNP 123899 to 124499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,889 DEBUG Processing 65/235 atomic regions from SNP 19233 to 19833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,946 DEBUG Processing 603/909 atomic regions from SNP 180814 to 181414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,993 DEBUG Processing 503/1140 atomic regions from SNP 150658 to 151258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,037 DEBUG Processing 538/1032 atomic regions from SNP 161223 to 161823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,099 DEBUG Processing 414/653 atomic regions from SNP 124199 to 124799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,107 DEBUG Processing 635/865 atomic regions from SNP 190455 to 191055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,127 DEBUG Processing 66/235 atomic regions from SNP 19533 to 20133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,231 DEBUG Processing 604/909 atomic regions from SNP 181114 to 181714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,284 DEBUG Processing 504/1140 atomic regions from SNP 150958 to 151558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,295 DEBUG Processing 539/1032 atomic regions from SNP 161523 to 162123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,362 DEBUG Processing 67/235 atomic regions from SNP 19833 to 20433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,364 DEBUG Processing 415/653 atomic regions from SNP 124499 to 125099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,383 DEBUG Processing 636/865 atomic regions from SNP 190755 to 191355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,524 DEBUG Processing 605/909 atomic regions from SNP 181414 to 182014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,565 DEBUG Processing 540/1032 atomic regions from SNP 161823 to 162423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,570 DEBUG Processing 505/1140 atomic regions from SNP 151258 to 151858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,593 DEBUG Processing 68/235 atomic regions from SNP 20133 to 20733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,602 DEBUG Processing 416/653 atomic regions from SNP 124799 to 125399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,658 DEBUG Processing 637/865 atomic regions from SNP 191055 to 191655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,821 DEBUG Processing 606/909 atomic regions from SNP 181714 to 182314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,827 DEBUG Processing 541/1032 atomic regions from SNP 162123 to 162723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,828 DEBUG Processing 69/235 atomic regions from SNP 20433 to 21033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,837 DEBUG Processing 506/1140 atomic regions from SNP 151558 to 152158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,847 DEBUG Processing 417/653 atomic regions from SNP 125099 to 125699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,938 DEBUG Processing 638/865 atomic regions from SNP 191355 to 191955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,069 DEBUG Processing 70/235 atomic regions from SNP 20733 to 21333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,085 DEBUG Processing 542/1032 atomic regions from SNP 162423 to 163023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,107 DEBUG Processing 507/1140 atomic regions from SNP 151858 to 152458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,109 DEBUG Processing 418/653 atomic regions from SNP 125399 to 125999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,116 DEBUG Processing 607/909 atomic regions from SNP 182014 to 182614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,212 DEBUG Processing 639/865 atomic regions from SNP 191655 to 192255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,310 DEBUG Processing 71/235 atomic regions from SNP 21033 to 21633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,351 DEBUG Processing 543/1032 atomic regions from SNP 162723 to 163323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,381 DEBUG Processing 419/653 atomic regions from SNP 125699 to 126299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,382 DEBUG Processing 508/1140 atomic regions from SNP 152158 to 152758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,408 DEBUG Processing 608/909 atomic regions from SNP 182314 to 182914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,485 DEBUG Processing 640/865 atomic regions from SNP 191955 to 192555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,549 DEBUG Processing 72/235 atomic regions from SNP 21333 to 21933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,627 DEBUG Processing 544/1032 atomic regions from SNP 163023 to 163623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,657 DEBUG Processing 420/653 atomic regions from SNP 125999 to 126599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,663 DEBUG Processing 509/1140 atomic regions from SNP 152458 to 153058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,698 DEBUG Processing 609/909 atomic regions from SNP 182614 to 183214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,763 DEBUG Processing 641/865 atomic regions from SNP 192255 to 192855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,781 DEBUG Processing 73/235 atomic regions from SNP 21633 to 22233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,900 DEBUG Processing 545/1032 atomic regions from SNP 163323 to 163923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,919 DEBUG Processing 421/653 atomic regions from SNP 126299 to 126899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,936 DEBUG Processing 510/1140 atomic regions from SNP 152758 to 153358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,980 DEBUG Processing 610/909 atomic regions from SNP 182914 to 183514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,010 DEBUG Processing 74/235 atomic regions from SNP 21933 to 22533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,039 DEBUG Processing 642/865 atomic regions from SNP 192555 to 193155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,167 DEBUG Processing 422/653 atomic regions from SNP 126599 to 127199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,181 DEBUG Processing 546/1032 atomic regions from SNP 163623 to 164223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,207 DEBUG Processing 511/1140 atomic regions from SNP 153058 to 153658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,248 DEBUG Processing 75/235 atomic regions from SNP 22233 to 22833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,264 DEBUG Processing 611/909 atomic regions from SNP 183214 to 183814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,321 DEBUG Processing 643/865 atomic regions from SNP 192855 to 193455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,429 DEBUG Processing 423/653 atomic regions from SNP 126899 to 127499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,442 DEBUG Processing 547/1032 atomic regions from SNP 163923 to 164523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,481 DEBUG Processing 512/1140 atomic regions from SNP 153358 to 153958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,488 DEBUG Processing 76/235 atomic regions from SNP 22533 to 23133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,536 DEBUG Processing 612/909 atomic regions from SNP 183514 to 184114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,598 DEBUG Processing 644/865 atomic regions from SNP 193155 to 193755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,699 DEBUG Processing 424/653 atomic regions from SNP 127199 to 127799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,700 DEBUG Processing 548/1032 atomic regions from SNP 164223 to 164823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,727 DEBUG Processing 77/235 atomic regions from SNP 22833 to 23433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,754 DEBUG Processing 513/1140 atomic regions from SNP 153658 to 154258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,789 DEBUG Processing 613/909 atomic regions from SNP 183814 to 184414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,848 DEBUG Processing 645/865 atomic regions from SNP 193455 to 194055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,958 DEBUG Processing 425/653 atomic regions from SNP 127499 to 128099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,961 DEBUG Processing 549/1032 atomic regions from SNP 164523 to 165123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,967 DEBUG Processing 78/235 atomic regions from SNP 23133 to 23733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,044 DEBUG Processing 614/909 atomic regions from SNP 184114 to 184714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,046 DEBUG Processing 514/1140 atomic regions from SNP 153958 to 154558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,101 DEBUG Processing 646/865 atomic regions from SNP 193755 to 194355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,205 DEBUG Processing 79/235 atomic regions from SNP 23433 to 24033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,221 DEBUG Processing 550/1032 atomic regions from SNP 164823 to 165423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,233 DEBUG Processing 426/653 atomic regions from SNP 127799 to 128399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,294 DEBUG Processing 615/909 atomic regions from SNP 184414 to 185014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,343 DEBUG Processing 515/1140 atomic regions from SNP 154258 to 154858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,349 DEBUG Processing 647/865 atomic regions from SNP 194055 to 194655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,443 DEBUG Processing 80/235 atomic regions from SNP 23733 to 24333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,481 DEBUG Processing 551/1032 atomic regions from SNP 165123 to 165723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,514 DEBUG Processing 427/653 atomic regions from SNP 128099 to 128699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,549 DEBUG Processing 616/909 atomic regions from SNP 184714 to 185314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,599 DEBUG Processing 648/865 atomic regions from SNP 194355 to 194955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,637 DEBUG Processing 516/1140 atomic regions from SNP 154558 to 155158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,684 DEBUG Processing 81/235 atomic regions from SNP 24033 to 24633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,737 DEBUG Processing 552/1032 atomic regions from SNP 165423 to 166023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,787 DEBUG Processing 428/653 atomic regions from SNP 128399 to 128999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,802 DEBUG Processing 617/909 atomic regions from SNP 185014 to 185614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,851 DEBUG Processing 649/865 atomic regions from SNP 194655 to 195255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,922 DEBUG Processing 82/235 atomic regions from SNP 24333 to 24933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,929 DEBUG Processing 517/1140 atomic regions from SNP 154858 to 155458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,996 DEBUG Processing 553/1032 atomic regions from SNP 165723 to 166323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,051 DEBUG Processing 429/653 atomic regions from SNP 128699 to 129299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,054 DEBUG Processing 618/909 atomic regions from SNP 185314 to 185914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,106 DEBUG Processing 650/865 atomic regions from SNP 194955 to 195555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,160 DEBUG Processing 83/235 atomic regions from SNP 24633 to 25233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,208 DEBUG Processing 518/1140 atomic regions from SNP 155158 to 155758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,255 DEBUG Processing 554/1032 atomic regions from SNP 166023 to 166623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,305 DEBUG Processing 619/909 atomic regions from SNP 185614 to 186214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,318 DEBUG Processing 430/653 atomic regions from SNP 128999 to 129599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,360 DEBUG Processing 651/865 atomic regions from SNP 195255 to 195855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,404 DEBUG Processing 84/235 atomic regions from SNP 24933 to 25533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,491 DEBUG Processing 519/1140 atomic regions from SNP 155458 to 156058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,518 DEBUG Processing 555/1032 atomic regions from SNP 166323 to 166923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,556 DEBUG Processing 620/909 atomic regions from SNP 185914 to 186514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,595 DEBUG Processing 431/653 atomic regions from SNP 129299 to 129899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,615 DEBUG Processing 652/865 atomic regions from SNP 195555 to 196155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,648 DEBUG Processing 85/235 atomic regions from SNP 25233 to 25833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,768 DEBUG Processing 520/1140 atomic regions from SNP 155758 to 156358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,776 DEBUG Processing 556/1032 atomic regions from SNP 166623 to 167223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,807 DEBUG Processing 621/909 atomic regions from SNP 186214 to 186814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,866 DEBUG Processing 432/653 atomic regions from SNP 129599 to 130199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,879 DEBUG Processing 653/865 atomic regions from SNP 195855 to 196455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,890 DEBUG Processing 86/235 atomic regions from SNP 25533 to 26133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,036 DEBUG Processing 557/1032 atomic regions from SNP 166923 to 167523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,056 DEBUG Processing 622/909 atomic regions from SNP 186514 to 187114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,062 DEBUG Processing 521/1140 atomic regions from SNP 156058 to 156658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,135 DEBUG Processing 87/235 atomic regions from SNP 25833 to 26433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,142 DEBUG Processing 433/653 atomic regions from SNP 129899 to 130499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,154 DEBUG Processing 654/865 atomic regions from SNP 196155 to 196755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,300 DEBUG Processing 558/1032 atomic regions from SNP 167223 to 167823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,306 DEBUG Processing 623/909 atomic regions from SNP 186814 to 187414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,363 DEBUG Processing 522/1140 atomic regions from SNP 156358 to 156958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,374 DEBUG Processing 88/235 atomic regions from SNP 26133 to 26733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,413 DEBUG Processing 434/653 atomic regions from SNP 130199 to 130799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,431 DEBUG Processing 655/865 atomic regions from SNP 196455 to 197055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,557 DEBUG Processing 624/909 atomic regions from SNP 187114 to 187714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,569 DEBUG Processing 559/1032 atomic regions from SNP 167523 to 168123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,609 DEBUG Processing 89/235 atomic regions from SNP 26433 to 27033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,668 DEBUG Processing 523/1140 atomic regions from SNP 156658 to 157258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,681 DEBUG Processing 656/865 atomic regions from SNP 196755 to 197355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,682 DEBUG Processing 435/653 atomic regions from SNP 130499 to 131099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,812 DEBUG Processing 625/909 atomic regions from SNP 187414 to 188014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,848 DEBUG Processing 560/1032 atomic regions from SNP 167823 to 168423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,849 DEBUG Processing 90/235 atomic regions from SNP 26733 to 27333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,934 DEBUG Processing 657/865 atomic regions from SNP 197055 to 197655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,948 DEBUG Processing 436/653 atomic regions from SNP 130799 to 131399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,976 DEBUG Processing 524/1140 atomic regions from SNP 156958 to 157558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,060 DEBUG Processing 626/909 atomic regions from SNP 187714 to 188314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,079 DEBUG Processing 91/235 atomic regions from SNP 27033 to 27633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,118 DEBUG Processing 561/1032 atomic regions from SNP 168123 to 168723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,183 DEBUG Processing 658/865 atomic regions from SNP 197355 to 197955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,190 DEBUG Processing 437/653 atomic regions from SNP 131099 to 131699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,273 DEBUG Processing 525/1140 atomic regions from SNP 157258 to 157858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,306 DEBUG Processing 627/909 atomic regions from SNP 188014 to 188614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,310 DEBUG Processing 92/235 atomic regions from SNP 27333 to 27933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,397 DEBUG Processing 562/1032 atomic regions from SNP 168423 to 169023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,453 DEBUG Processing 659/865 atomic regions from SNP 197655 to 198255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,454 DEBUG Processing 438/653 atomic regions from SNP 131399 to 131999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,545 DEBUG Processing 93/235 atomic regions from SNP 27633 to 28233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,560 DEBUG Processing 628/909 atomic regions from SNP 188314 to 188914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,574 DEBUG Processing 526/1140 atomic regions from SNP 157558 to 158158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,673 DEBUG Processing 563/1032 atomic regions from SNP 168723 to 169323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,714 DEBUG Processing 660/865 atomic regions from SNP 197955 to 198555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,730 DEBUG Processing 439/653 atomic regions from SNP 131699 to 132299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,779 DEBUG Processing 94/235 atomic regions from SNP 27933 to 28533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,807 DEBUG Processing 629/909 atomic regions from SNP 188614 to 189214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,880 DEBUG Processing 527/1140 atomic regions from SNP 157858 to 158458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,948 DEBUG Processing 564/1032 atomic regions from SNP 169023 to 169623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,976 DEBUG Processing 661/865 atomic regions from SNP 198255 to 198855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,998 DEBUG Processing 440/653 atomic regions from SNP 131999 to 132599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,014 DEBUG Processing 95/235 atomic regions from SNP 28233 to 28833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,056 DEBUG Processing 630/909 atomic regions from SNP 188914 to 189514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,189 DEBUG Processing 528/1140 atomic regions from SNP 158158 to 158758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,228 DEBUG Processing 565/1032 atomic regions from SNP 169323 to 169923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,249 DEBUG Processing 662/865 atomic regions from SNP 198555 to 199155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,253 DEBUG Processing 96/235 atomic regions from SNP 28533 to 29133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,262 DEBUG Processing 441/653 atomic regions from SNP 132299 to 132899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,304 DEBUG Processing 631/909 atomic regions from SNP 189214 to 189814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,496 DEBUG Processing 97/235 atomic regions from SNP 28833 to 29433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,497 DEBUG Processing 529/1140 atomic regions from SNP 158458 to 159058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,501 DEBUG Processing 566/1032 atomic regions from SNP 169623 to 170223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,512 DEBUG Processing 442/653 atomic regions from SNP 132599 to 133199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,513 DEBUG Processing 663/865 atomic regions from SNP 198855 to 199455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,557 DEBUG Processing 632/909 atomic regions from SNP 189514 to 190114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,736 DEBUG Processing 98/235 atomic regions from SNP 29133 to 29733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,763 DEBUG Processing 443/653 atomic regions from SNP 132899 to 133499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,764 DEBUG Processing 664/865 atomic regions from SNP 199155 to 199755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,772 DEBUG Processing 567/1032 atomic regions from SNP 169923 to 170523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,801 DEBUG Processing 530/1140 atomic regions from SNP 158758 to 159358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,813 DEBUG Processing 633/909 atomic regions from SNP 189814 to 190414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,970 DEBUG Processing 99/235 atomic regions from SNP 29433 to 30033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,012 DEBUG Processing 665/865 atomic regions from SNP 199455 to 200055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,024 DEBUG Processing 444/653 atomic regions from SNP 133199 to 133799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,043 DEBUG Processing 568/1032 atomic regions from SNP 170223 to 170823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,067 DEBUG Processing 634/909 atomic regions from SNP 190114 to 190714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,116 DEBUG Processing 531/1140 atomic regions from SNP 159058 to 159658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,197 DEBUG Processing 100/235 atomic regions from SNP 29733 to 30333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,262 DEBUG Processing 666/865 atomic regions from SNP 199755 to 200355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,286 DEBUG Processing 445/653 atomic regions from SNP 133499 to 134099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,312 DEBUG Processing 569/1032 atomic regions from SNP 170523 to 171123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,330 DEBUG Processing 635/909 atomic regions from SNP 190414 to 191014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,425 DEBUG Processing 101/235 atomic regions from SNP 30033 to 30633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,438 DEBUG Processing 532/1140 atomic regions from SNP 159358 to 159958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,510 DEBUG Processing 667/865 atomic regions from SNP 200055 to 200655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,557 DEBUG Processing 446/653 atomic regions from SNP 133799 to 134399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,581 DEBUG Processing 570/1032 atomic regions from SNP 170823 to 171423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,591 DEBUG Processing 636/909 atomic regions from SNP 190714 to 191314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,652 DEBUG Processing 102/235 atomic regions from SNP 30333 to 30933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,750 DEBUG Processing 533/1140 atomic regions from SNP 159658 to 160258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,757 DEBUG Processing 668/865 atomic regions from SNP 200355 to 200955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,816 DEBUG Processing 447/653 atomic regions from SNP 134099 to 134699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,851 DEBUG Processing 637/909 atomic regions from SNP 191014 to 191614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,853 DEBUG Processing 571/1032 atomic regions from SNP 171123 to 171723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,886 DEBUG Processing 103/235 atomic regions from SNP 30633 to 31233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,001 DEBUG Processing 669/865 atomic regions from SNP 200655 to 201255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,060 DEBUG Processing 534/1140 atomic regions from SNP 159958 to 160558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,084 DEBUG Processing 448/653 atomic regions from SNP 134399 to 134999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,108 DEBUG Processing 638/909 atomic regions from SNP 191314 to 191914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,123 DEBUG Processing 104/235 atomic regions from SNP 30933 to 31533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,127 DEBUG Processing 572/1032 atomic regions from SNP 171423 to 172023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,237 DEBUG Processing 670/865 atomic regions from SNP 200955 to 201555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,362 DEBUG Processing 449/653 atomic regions from SNP 134699 to 135299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,367 DEBUG Processing 105/235 atomic regions from SNP 31233 to 31833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,367 DEBUG Processing 639/909 atomic regions from SNP 191614 to 192214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,372 DEBUG Processing 535/1140 atomic regions from SNP 160258 to 160858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,406 DEBUG Processing 573/1032 atomic regions from SNP 171723 to 172323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,476 DEBUG Processing 671/865 atomic regions from SNP 201255 to 201855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,610 DEBUG Processing 106/235 atomic regions from SNP 31533 to 32133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,629 DEBUG Processing 640/909 atomic regions from SNP 191914 to 192514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,634 DEBUG Processing 450/653 atomic regions from SNP 134999 to 135599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,678 DEBUG Processing 574/1032 atomic regions from SNP 172023 to 172623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,685 DEBUG Processing 536/1140 atomic regions from SNP 160558 to 161158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,734 DEBUG Processing 672/865 atomic regions from SNP 201555 to 202155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,852 DEBUG Processing 107/235 atomic regions from SNP 31833 to 32433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,891 DEBUG Processing 641/909 atomic regions from SNP 192214 to 192814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,894 DEBUG Processing 451/653 atomic regions from SNP 135299 to 135899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,945 DEBUG Processing 575/1032 atomic regions from SNP 172323 to 172923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,998 DEBUG Processing 537/1140 atomic regions from SNP 160858 to 161458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,002 DEBUG Processing 673/865 atomic regions from SNP 201855 to 202455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,091 DEBUG Processing 108/235 atomic regions from SNP 32133 to 32733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:32,142 DEBUG Processing 452/653 atomic regions from SNP 135599 to 136199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,148 DEBUG Processing 642/909 atomic regions from SNP 192514 to 193114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,216 DEBUG Processing 576/1032 atomic regions from SNP 172623 to 173223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,258 DEBUG Processing 674/865 atomic regions from SNP 202155 to 202755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,299 DEBUG Processing 538/1140 atomic regions from SNP 161158 to 161758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,331 DEBUG Processing 109/235 atomic regions from SNP 32433 to 33033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:32,392 DEBUG Processing 453/653 atomic regions from SNP 135899 to 136499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,409 DEBUG Processing 643/909 atomic regions from SNP 192814 to 193414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,486 DEBUG Processing 577/1032 atomic regions from SNP 172923 to 173523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,538 DEBUG Processing 675/865 atomic regions from SNP 202455 to 203055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,574 DEBUG Processing 539/1140 atomic regions from SNP 161458 to 162058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,575 DEBUG Processing 110/235 atomic regions from SNP 32733 to 33333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:32,641 DEBUG Processing 454/653 atomic regions from SNP 136199 to 136799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,660 DEBUG Processing 644/909 atomic regions from SNP 193114 to 193714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,756 DEBUG Processing 578/1032 atomic regions from SNP 173223 to 173823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,819 DEBUG Processing 111/235 atomic regions from SNP 33033 to 33633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:32,823 DEBUG Processing 676/865 atomic regions from SNP 202755 to 203355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,855 DEBUG Processing 540/1140 atomic regions from SNP 161758 to 162358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,892 DEBUG Processing 455/653 atomic regions from SNP 136499 to 137099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,917 DEBUG Processing 645/909 atomic regions from SNP 193414 to 194014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,026 DEBUG Processing 579/1032 atomic regions from SNP 173523 to 174123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,059 DEBUG Processing 112/235 atomic regions from SNP 33333 to 33933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,102 DEBUG Processing 677/865 atomic regions from SNP 203055 to 203655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,137 DEBUG Processing 541/1140 atomic regions from SNP 162058 to 162658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,142 DEBUG Processing 456/653 atomic regions from SNP 136799 to 137399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,172 DEBUG Processing 646/909 atomic regions from SNP 193714 to 194314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,292 DEBUG Processing 580/1032 atomic regions from SNP 173823 to 174423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,296 DEBUG Processing 113/235 atomic regions from SNP 33633 to 34233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,369 DEBUG Processing 678/865 atomic regions from SNP 203355 to 203955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,397 DEBUG Processing 457/653 atomic regions from SNP 137099 to 137699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,419 DEBUG Processing 542/1140 atomic regions from SNP 162358 to 162958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,432 DEBUG Processing 647/909 atomic regions from SNP 194014 to 194614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,531 DEBUG Processing 114/235 atomic regions from SNP 33933 to 34533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,563 DEBUG Processing 581/1032 atomic regions from SNP 174123 to 174723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,641 DEBUG Processing 679/865 atomic regions from SNP 203655 to 204255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,659 DEBUG Processing 458/653 atomic regions from SNP 137399 to 137999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,694 DEBUG Processing 648/909 atomic regions from SNP 194314 to 194914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,701 DEBUG Processing 543/1140 atomic regions from SNP 162658 to 163258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,770 DEBUG Processing 115/235 atomic regions from SNP 34233 to 34833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,835 DEBUG Processing 582/1032 atomic regions from SNP 174423 to 175023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,912 DEBUG Processing 680/865 atomic regions from SNP 203955 to 204555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,920 DEBUG Processing 459/653 atomic regions from SNP 137699 to 138299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,968 DEBUG Processing 649/909 atomic regions from SNP 194614 to 195214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,989 DEBUG Processing 544/1140 atomic regions from SNP 162958 to 163558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,015 DEBUG Processing 116/235 atomic regions from SNP 34533 to 35133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,101 DEBUG Processing 583/1032 atomic regions from SNP 174723 to 175323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,176 DEBUG Processing 460/653 atomic regions from SNP 137999 to 138599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,180 DEBUG Processing 681/865 atomic regions from SNP 204255 to 204855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,245 DEBUG Processing 650/909 atomic regions from SNP 194914 to 195514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,267 DEBUG Processing 117/235 atomic regions from SNP 34833 to 35433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,283 DEBUG Processing 545/1140 atomic regions from SNP 163258 to 163858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,365 DEBUG Processing 584/1032 atomic regions from SNP 175023 to 175623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,419 DEBUG Processing 461/653 atomic regions from SNP 138299 to 138899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,451 DEBUG Processing 682/865 atomic regions from SNP 204555 to 205155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,519 DEBUG Processing 118/235 atomic regions from SNP 35133 to 35733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,519 DEBUG Processing 651/909 atomic regions from SNP 195214 to 195814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,569 DEBUG Processing 546/1140 atomic regions from SNP 163558 to 164158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,635 DEBUG Processing 585/1032 atomic regions from SNP 175323 to 175923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,663 DEBUG Processing 462/653 atomic regions from SNP 138599 to 139199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,723 DEBUG Processing 683/865 atomic regions from SNP 204855 to 205455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,769 DEBUG Processing 119/235 atomic regions from SNP 35433 to 36033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,798 DEBUG Processing 652/909 atomic regions from SNP 195514 to 196114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,860 DEBUG Processing 547/1140 atomic regions from SNP 163858 to 164458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,912 DEBUG Processing 586/1032 atomic regions from SNP 175623 to 176223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,916 DEBUG Processing 463/653 atomic regions from SNP 138899 to 139499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,004 DEBUG Processing 684/865 atomic regions from SNP 205155 to 205755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,018 DEBUG Processing 120/235 atomic regions from SNP 35733 to 36333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:35,089 DEBUG Processing 653/909 atomic regions from SNP 195814 to 196414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,151 DEBUG Processing 548/1140 atomic regions from SNP 164158 to 164758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,171 DEBUG Processing 464/653 atomic regions from SNP 139199 to 139799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,184 DEBUG Processing 587/1032 atomic regions from SNP 175923 to 176523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,264 DEBUG Processing 121/235 atomic regions from SNP 36033 to 36633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:35,288 DEBUG Processing 685/865 atomic regions from SNP 205455 to 206055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,375 DEBUG Processing 654/909 atomic regions from SNP 196114 to 196714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,409 DEBUG Processing 465/653 atomic regions from SNP 139499 to 140099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,437 DEBUG Processing 549/1140 atomic regions from SNP 164458 to 165058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,453 DEBUG Processing 588/1032 atomic regions from SNP 176223 to 176823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,511 DEBUG Processing 122/235 atomic regions from SNP 36333 to 36933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:35,577 DEBUG Processing 686/865 atomic regions from SNP 205755 to 206355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,645 DEBUG Processing 466/653 atomic regions from SNP 139799 to 140399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,647 DEBUG Processing 655/909 atomic regions from SNP 196414 to 197014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,718 DEBUG Processing 550/1140 atomic regions from SNP 164758 to 165358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,723 DEBUG Processing 589/1032 atomic regions from SNP 176523 to 177123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,759 DEBUG Processing 123/235 atomic regions from SNP 36633 to 37233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:35,857 DEBUG Processing 687/865 atomic regions from SNP 206055 to 206655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,885 DEBUG Processing 467/653 atomic regions from SNP 140099 to 140699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,920 DEBUG Processing 656/909 atomic regions from SNP 196714 to 197314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,994 DEBUG Processing 590/1032 atomic regions from SNP 176823 to 177423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,004 DEBUG Processing 124/235 atomic regions from SNP 36933 to 37533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:36,004 DEBUG Processing 551/1140 atomic regions from SNP 165058 to 165658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,123 DEBUG Processing 688/865 atomic regions from SNP 206355 to 206955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,141 DEBUG Processing 468/653 atomic regions from SNP 140399 to 140999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,175 DEBUG Processing 657/909 atomic regions from SNP 197014 to 197614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,261 DEBUG Processing 125/235 atomic regions from SNP 37233 to 37833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:36,267 DEBUG Processing 591/1032 atomic regions from SNP 177123 to 177723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,293 DEBUG Processing 552/1140 atomic regions from SNP 165358 to 165958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,399 DEBUG Processing 689/865 atomic regions from SNP 206655 to 207255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,412 DEBUG Processing 469/653 atomic regions from SNP 140699 to 141299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,426 DEBUG Processing 658/909 atomic regions from SNP 197314 to 197914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,506 DEBUG Processing 126/235 atomic regions from SNP 37533 to 38133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:36,540 DEBUG Processing 592/1032 atomic regions from SNP 177423 to 178023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,581 DEBUG Processing 553/1140 atomic regions from SNP 165658 to 166258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,673 DEBUG Processing 690/865 atomic regions from SNP 206955 to 207555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,679 DEBUG Processing 470/653 atomic regions from SNP 140999 to 141599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,682 DEBUG Processing 659/909 atomic regions from SNP 197614 to 198214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,750 DEBUG Processing 127/235 atomic regions from SNP 37833 to 38433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:36,815 DEBUG Processing 593/1032 atomic regions from SNP 177723 to 178323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,866 DEBUG Processing 554/1140 atomic regions from SNP 165958 to 166558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,937 DEBUG Processing 660/909 atomic regions from SNP 197914 to 198514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,955 DEBUG Processing 691/865 atomic regions from SNP 207255 to 207855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,956 DEBUG Processing 471/653 atomic regions from SNP 141299 to 141899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,995 DEBUG Processing 128/235 atomic regions from SNP 38133 to 38733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:37,091 DEBUG Processing 594/1032 atomic regions from SNP 178023 to 178623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,150 DEBUG Processing 555/1140 atomic regions from SNP 166258 to 166858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,193 DEBUG Processing 661/909 atomic regions from SNP 198214 to 198814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,226 DEBUG Processing 472/653 atomic regions from SNP 141599 to 142199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,242 DEBUG Processing 692/865 atomic regions from SNP 207555 to 208155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,247 DEBUG Processing 129/235 atomic regions from SNP 38433 to 39033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:37,367 DEBUG Processing 595/1032 atomic regions from SNP 178323 to 178923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,429 DEBUG Processing 556/1140 atomic regions from SNP 166558 to 167158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,452 DEBUG Processing 662/909 atomic regions from SNP 198514 to 199114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,497 DEBUG Processing 130/235 atomic regions from SNP 38733 to 39333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:37,505 DEBUG Processing 473/653 atomic regions from SNP 141899 to 142499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,524 DEBUG Processing 693/865 atomic regions from SNP 207855 to 208455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,642 DEBUG Processing 596/1032 atomic regions from SNP 178623 to 179223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,712 DEBUG Processing 663/909 atomic regions from SNP 198814 to 199414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,713 DEBUG Processing 557/1140 atomic regions from SNP 166858 to 167458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,748 DEBUG Processing 131/235 atomic regions from SNP 39033 to 39633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:37,783 DEBUG Processing 474/653 atomic regions from SNP 142199 to 142799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,807 DEBUG Processing 694/865 atomic regions from SNP 208155 to 208755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,940 DEBUG Processing 597/1032 atomic regions from SNP 178923 to 179523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,986 DEBUG Processing 664/909 atomic regions from SNP 199114 to 199714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,005 DEBUG Processing 132/235 atomic regions from SNP 39333 to 39933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:38,014 DEBUG Processing 558/1140 atomic regions from SNP 167158 to 167758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,055 DEBUG Processing 475/653 atomic regions from SNP 142499 to 143099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,088 DEBUG Processing 695/865 atomic regions from SNP 208455 to 209055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,240 DEBUG Processing 598/1032 atomic regions from SNP 179223 to 179823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,255 DEBUG Processing 665/909 atomic regions from SNP 199414 to 200014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,258 DEBUG Processing 133/235 atomic regions from SNP 39633 to 40233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:38,311 DEBUG Processing 559/1140 atomic regions from SNP 167458 to 168058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,327 DEBUG Processing 476/653 atomic regions from SNP 142799 to 143399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,358 DEBUG Processing 696/865 atomic regions from SNP 208755 to 209355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,514 DEBUG Processing 134/235 atomic regions from SNP 39933 to 40533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:38,526 DEBUG Processing 666/909 atomic regions from SNP 199714 to 200314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,543 DEBUG Processing 599/1032 atomic regions from SNP 179523 to 180123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,605 DEBUG Processing 560/1140 atomic regions from SNP 167758 to 168358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,610 DEBUG Processing 477/653 atomic regions from SNP 143099 to 143699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,654 DEBUG Processing 697/865 atomic regions from SNP 209055 to 209655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,767 DEBUG Processing 135/235 atomic regions from SNP 40233 to 40833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:38,795 DEBUG Processing 667/909 atomic regions from SNP 200014 to 200614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,848 DEBUG Processing 600/1032 atomic regions from SNP 179823 to 180423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,899 DEBUG Processing 478/653 atomic regions from SNP 143399 to 143999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,899 DEBUG Processing 561/1140 atomic regions from SNP 168058 to 168658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,946 DEBUG Processing 698/865 atomic regions from SNP 209355 to 209955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,010 DEBUG Processing 136/235 atomic regions from SNP 40533 to 41133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:39,063 DEBUG Processing 668/909 atomic regions from SNP 200314 to 200914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,150 DEBUG Processing 601/1032 atomic regions from SNP 180123 to 180723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,180 DEBUG Processing 479/653 atomic regions from SNP 143699 to 144299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,192 DEBUG Processing 562/1140 atomic regions from SNP 168358 to 168958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,231 DEBUG Processing 699/865 atomic regions from SNP 209655 to 210255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,249 DEBUG Processing 137/235 atomic regions from SNP 40833 to 41433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:39,325 DEBUG Processing 669/909 atomic regions from SNP 200614 to 201214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,438 DEBUG Processing 480/653 atomic regions from SNP 143999 to 144599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,448 DEBUG Processing 602/1032 atomic regions from SNP 180423 to 181023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,487 DEBUG Processing 563/1140 atomic regions from SNP 168658 to 169258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,491 DEBUG Processing 138/235 atomic regions from SNP 41133 to 41733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:39,522 DEBUG Processing 700/865 atomic regions from SNP 209955 to 210555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,590 DEBUG Processing 670/909 atomic regions from SNP 200914 to 201514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,699 DEBUG Processing 481/653 atomic regions from SNP 144299 to 144899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,735 DEBUG Processing 139/235 atomic regions from SNP 41433 to 42033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:39,747 DEBUG Processing 603/1032 atomic regions from SNP 180723 to 181323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,784 DEBUG Processing 564/1140 atomic regions from SNP 168958 to 169558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,797 DEBUG Processing 701/865 atomic regions from SNP 210255 to 210855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,851 DEBUG Processing 671/909 atomic regions from SNP 201214 to 201814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,958 DEBUG Processing 482/653 atomic regions from SNP 144599 to 145199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,986 DEBUG Processing 140/235 atomic regions from SNP 41733 to 42333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:40,036 DEBUG Processing 604/1032 atomic regions from SNP 181023 to 181623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,083 DEBUG Processing 565/1140 atomic regions from SNP 169258 to 169858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,086 DEBUG Processing 702/865 atomic regions from SNP 210555 to 211155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,118 DEBUG Processing 672/909 atomic regions from SNP 201514 to 202114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,216 DEBUG Processing 483/653 atomic regions from SNP 144899 to 145499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,231 DEBUG Processing 141/235 atomic regions from SNP 42033 to 42633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:40,327 DEBUG Processing 605/1032 atomic regions from SNP 181323 to 181923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,370 DEBUG Processing 703/865 atomic regions from SNP 210855 to 211455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,382 DEBUG Processing 566/1140 atomic regions from SNP 169558 to 170158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,389 DEBUG Processing 673/909 atomic regions from SNP 201814 to 202414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,474 DEBUG Processing 142/235 atomic regions from SNP 42333 to 42933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:40,477 DEBUG Processing 484/653 atomic regions from SNP 145199 to 145799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,612 DEBUG Processing 606/1032 atomic regions from SNP 181623 to 182223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,664 DEBUG Processing 704/865 atomic regions from SNP 211155 to 211755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,666 DEBUG Processing 674/909 atomic regions from SNP 202114 to 202714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,682 DEBUG Processing 567/1140 atomic regions from SNP 169858 to 170458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,722 DEBUG Processing 143/235 atomic regions from SNP 42633 to 43233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:40,734 DEBUG Processing 485/653 atomic regions from SNP 145499 to 146099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,899 DEBUG Processing 607/1032 atomic regions from SNP 181923 to 182523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,939 DEBUG Processing 675/909 atomic regions from SNP 202414 to 203014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,961 DEBUG Processing 705/865 atomic regions from SNP 211455 to 212055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,975 DEBUG Processing 144/235 atomic regions from SNP 42933 to 43533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:40,977 DEBUG Processing 568/1140 atomic regions from SNP 170158 to 170758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,992 DEBUG Processing 486/653 atomic regions from SNP 145799 to 146399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,184 DEBUG Processing 608/1032 atomic regions from SNP 182223 to 182823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,211 DEBUG Processing 676/909 atomic regions from SNP 202714 to 203314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,232 DEBUG Processing 145/235 atomic regions from SNP 43233 to 43833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:41,256 DEBUG Processing 487/653 atomic regions from SNP 146099 to 146699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,258 DEBUG Processing 706/865 atomic regions from SNP 211755 to 212355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,269 DEBUG Processing 569/1140 atomic regions from SNP 170458 to 171058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,463 DEBUG Processing 609/1032 atomic regions from SNP 182523 to 183123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,480 DEBUG Processing 677/909 atomic regions from SNP 203014 to 203614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,485 DEBUG Processing 146/235 atomic regions from SNP 43533 to 44133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:41,519 DEBUG Processing 488/653 atomic regions from SNP 146399 to 146999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,538 DEBUG Processing 707/865 atomic regions from SNP 212055 to 212655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,563 DEBUG Processing 570/1140 atomic regions from SNP 170758 to 171358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,731 DEBUG Processing 147/235 atomic regions from SNP 43833 to 44433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:41,740 DEBUG Processing 678/909 atomic regions from SNP 203314 to 203914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,740 DEBUG Processing 610/1032 atomic regions from SNP 182823 to 183423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,775 DEBUG Processing 489/653 atomic regions from SNP 146699 to 147299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,803 DEBUG Processing 708/865 atomic regions from SNP 212355 to 212955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,854 DEBUG Processing 571/1140 atomic regions from SNP 171058 to 171658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,972 DEBUG Processing 148/235 atomic regions from SNP 44133 to 44733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:42,003 DEBUG Processing 679/909 atomic regions from SNP 203614 to 204214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,018 DEBUG Processing 611/1032 atomic regions from SNP 183123 to 183723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,030 DEBUG Processing 490/653 atomic regions from SNP 146999 to 147599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,068 DEBUG Processing 709/865 atomic regions from SNP 212655 to 213255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,144 DEBUG Processing 572/1140 atomic regions from SNP 171358 to 171958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,213 DEBUG Processing 149/235 atomic regions from SNP 44433 to 45033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:42,267 DEBUG Processing 680/909 atomic regions from SNP 203914 to 204514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,285 DEBUG Processing 491/653 atomic regions from SNP 147299 to 147899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,294 DEBUG Processing 612/1032 atomic regions from SNP 183423 to 184023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,335 DEBUG Processing 710/865 atomic regions from SNP 212955 to 213555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,432 DEBUG Processing 573/1140 atomic regions from SNP 171658 to 172258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,460 DEBUG Processing 150/235 atomic regions from SNP 44733 to 45333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:42,534 DEBUG Processing 681/909 atomic regions from SNP 204214 to 204814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,544 DEBUG Processing 492/653 atomic regions from SNP 147599 to 148199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,575 DEBUG Processing 613/1032 atomic regions from SNP 183723 to 184323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,604 DEBUG Processing 711/865 atomic regions from SNP 213255 to 213855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,706 DEBUG Processing 151/235 atomic regions from SNP 45033 to 45633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:42,716 DEBUG Processing 574/1140 atomic regions from SNP 171958 to 172558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,810 DEBUG Processing 493/653 atomic regions from SNP 147899 to 148499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,834 DEBUG Processing 682/909 atomic regions from SNP 204514 to 205114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,860 DEBUG Processing 614/1032 atomic regions from SNP 184023 to 184623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,875 DEBUG Processing 712/865 atomic regions from SNP 213555 to 214155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,950 DEBUG Processing 152/235 atomic regions from SNP 45333 to 45933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:42,995 DEBUG Processing 575/1140 atomic regions from SNP 172258 to 172858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,094 DEBUG Processing 494/653 atomic regions from SNP 148199 to 148799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,140 DEBUG Processing 683/909 atomic regions from SNP 204814 to 205414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,144 DEBUG Processing 615/1032 atomic regions from SNP 184323 to 184923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,146 DEBUG Processing 713/865 atomic regions from SNP 213855 to 214455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,194 DEBUG Processing 153/235 atomic regions from SNP 45633 to 46233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:43,281 DEBUG Processing 576/1140 atomic regions from SNP 172558 to 173158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,378 DEBUG Processing 495/653 atomic regions from SNP 148499 to 149099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,416 DEBUG Processing 714/865 atomic regions from SNP 214155 to 214755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,430 DEBUG Processing 616/1032 atomic regions from SNP 184623 to 185223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,438 DEBUG Processing 684/909 atomic regions from SNP 205114 to 205714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,449 DEBUG Processing 154/235 atomic regions from SNP 45933 to 46533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:43,570 DEBUG Processing 577/1140 atomic regions from SNP 172858 to 173458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,672 DEBUG Processing 496/653 atomic regions from SNP 148799 to 149399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,686 DEBUG Processing 715/865 atomic regions from SNP 214455 to 215055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,706 DEBUG Processing 155/235 atomic regions from SNP 46233 to 46833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:43,713 DEBUG Processing 617/1032 atomic regions from SNP 184923 to 185523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,728 DEBUG Processing 685/909 atomic regions from SNP 205414 to 206014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,859 DEBUG Processing 578/1140 atomic regions from SNP 173158 to 173758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,954 DEBUG Processing 716/865 atomic regions from SNP 214755 to 215355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,962 DEBUG Processing 156/235 atomic regions from SNP 46533 to 47133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:43,965 DEBUG Processing 497/653 atomic regions from SNP 149099 to 149699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,992 DEBUG Processing 618/1032 atomic regions from SNP 185223 to 185823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,015 DEBUG Processing 686/909 atomic regions from SNP 205714 to 206314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,152 DEBUG Processing 579/1140 atomic regions from SNP 173458 to 174058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,216 DEBUG Processing 157/235 atomic regions from SNP 46833 to 47433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:44,221 DEBUG Processing 717/865 atomic regions from SNP 215055 to 215655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,255 DEBUG Processing 498/653 atomic regions from SNP 149399 to 149999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,269 DEBUG Processing 619/1032 atomic regions from SNP 185523 to 186123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,304 DEBUG Processing 687/909 atomic regions from SNP 206014 to 206614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,444 DEBUG Processing 580/1140 atomic regions from SNP 173758 to 174358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,468 DEBUG Processing 158/235 atomic regions from SNP 47133 to 47733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:44,483 DEBUG Processing 718/865 atomic regions from SNP 215355 to 215955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,536 DEBUG Processing 499/653 atomic regions from SNP 149699 to 150299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,543 DEBUG Processing 620/1032 atomic regions from SNP 185823 to 186423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,603 DEBUG Processing 688/909 atomic regions from SNP 206314 to 206914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,718 DEBUG Processing 159/235 atomic regions from SNP 47433 to 48033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:44,739 DEBUG Processing 581/1140 atomic regions from SNP 174058 to 174658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,741 DEBUG Processing 719/865 atomic regions from SNP 215655 to 216255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,812 DEBUG Processing 500/653 atomic regions from SNP 149999 to 150599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,819 DEBUG Processing 621/1032 atomic regions from SNP 186123 to 186723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,897 DEBUG Processing 689/909 atomic regions from SNP 206614 to 207214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,973 DEBUG Processing 160/235 atomic regions from SNP 47733 to 48333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:45,004 DEBUG Processing 720/865 atomic regions from SNP 215955 to 216555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,036 DEBUG Processing 582/1140 atomic regions from SNP 174358 to 174958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,073 DEBUG Processing 501/653 atomic regions from SNP 150299 to 150899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,092 DEBUG Processing 622/1032 atomic regions from SNP 186423 to 187023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,194 DEBUG Processing 690/909 atomic regions from SNP 206914 to 207514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,228 DEBUG Processing 161/235 atomic regions from SNP 48033 to 48633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:45,267 DEBUG Processing 721/865 atomic regions from SNP 216255 to 216855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,333 DEBUG Processing 583/1140 atomic regions from SNP 174658 to 175258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,342 DEBUG Processing 502/653 atomic regions from SNP 150599 to 151199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,367 DEBUG Processing 623/1032 atomic regions from SNP 186723 to 187323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,480 DEBUG Processing 691/909 atomic regions from SNP 207214 to 207814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,482 DEBUG Processing 162/235 atomic regions from SNP 48333 to 48933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:45,528 DEBUG Processing 722/865 atomic regions from SNP 216555 to 217155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,614 DEBUG Processing 503/653 atomic regions from SNP 150899 to 151499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,631 DEBUG Processing 584/1140 atomic regions from SNP 174958 to 175558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,646 DEBUG Processing 624/1032 atomic regions from SNP 187023 to 187623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,729 DEBUG Processing 163/235 atomic regions from SNP 48633 to 49233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:45,752 DEBUG Processing 692/909 atomic regions from SNP 207514 to 208114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,788 DEBUG Processing 723/865 atomic regions from SNP 216855 to 217455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,890 DEBUG Processing 504/653 atomic regions from SNP 151199 to 151799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,927 DEBUG Processing 585/1140 atomic regions from SNP 175258 to 175858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,933 DEBUG Processing 625/1032 atomic regions from SNP 187323 to 187923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,974 DEBUG Processing 164/235 atomic regions from SNP 48933 to 49533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:46,029 DEBUG Processing 693/909 atomic regions from SNP 207814 to 208414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,046 DEBUG Processing 724/865 atomic regions from SNP 217155 to 217755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,169 DEBUG Processing 505/653 atomic regions from SNP 151499 to 152099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,221 DEBUG Processing 165/235 atomic regions from SNP 49233 to 49833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:46,223 DEBUG Processing 626/1032 atomic regions from SNP 187623 to 188223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,229 DEBUG Processing 586/1140 atomic regions from SNP 175558 to 176158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,303 DEBUG Processing 725/865 atomic regions from SNP 217455 to 218055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,306 DEBUG Processing 694/909 atomic regions from SNP 208114 to 208714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,449 DEBUG Processing 506/653 atomic regions from SNP 151799 to 152399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,468 DEBUG Processing 166/235 atomic regions from SNP 49533 to 50133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:46,515 DEBUG Processing 627/1032 atomic regions from SNP 187923 to 188523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,528 DEBUG Processing 587/1140 atomic regions from SNP 175858 to 176458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,562 DEBUG Processing 726/865 atomic regions from SNP 217755 to 218355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,591 DEBUG Processing 695/909 atomic regions from SNP 208414 to 209014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,713 DEBUG Processing 167/235 atomic regions from SNP 49833 to 50433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:46,726 DEBUG Processing 507/653 atomic regions from SNP 152099 to 152699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,801 DEBUG Processing 628/1032 atomic regions from SNP 188223 to 188823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,819 DEBUG Processing 588/1140 atomic regions from SNP 176158 to 176758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,831 DEBUG Processing 727/865 atomic regions from SNP 218055 to 218655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,876 DEBUG Processing 696/909 atomic regions from SNP 208714 to 209314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,961 DEBUG Processing 168/235 atomic regions from SNP 50133 to 50733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:46,990 DEBUG Processing 508/653 atomic regions from SNP 152399 to 152999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,086 DEBUG Processing 629/1032 atomic regions from SNP 188523 to 189123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,112 DEBUG Processing 589/1140 atomic regions from SNP 176458 to 177058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,114 DEBUG Processing 728/865 atomic regions from SNP 218355 to 218955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,147 DEBUG Processing 697/909 atomic regions from SNP 209014 to 209614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,209 DEBUG Processing 169/235 atomic regions from SNP 50433 to 51033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:47,254 DEBUG Processing 509/653 atomic regions from SNP 152699 to 153299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,365 DEBUG Processing 630/1032 atomic regions from SNP 188823 to 189423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,380 DEBUG Processing 729/865 atomic regions from SNP 218655 to 219255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,401 DEBUG Processing 590/1140 atomic regions from SNP 176758 to 177358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,417 DEBUG Processing 698/909 atomic regions from SNP 209314 to 209914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,460 DEBUG Processing 170/235 atomic regions from SNP 50733 to 51333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:47,520 DEBUG Processing 510/653 atomic regions from SNP 152999 to 153599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,648 DEBUG Processing 631/1032 atomic regions from SNP 189123 to 189723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,652 DEBUG Processing 730/865 atomic regions from SNP 218955 to 219555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,694 DEBUG Processing 699/909 atomic regions from SNP 209614 to 210214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,700 DEBUG Processing 591/1140 atomic regions from SNP 177058 to 177658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,714 DEBUG Processing 171/235 atomic regions from SNP 51033 to 51633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:47,786 DEBUG Processing 511/653 atomic regions from SNP 153299 to 153899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,931 DEBUG Processing 731/865 atomic regions from SNP 219255 to 219855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,933 DEBUG Processing 632/1032 atomic regions from SNP 189423 to 190023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,973 DEBUG Processing 700/909 atomic regions from SNP 209914 to 210514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,973 DEBUG Processing 172/235 atomic regions from SNP 51333 to 51933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:48,000 DEBUG Processing 592/1140 atomic regions from SNP 177358 to 177958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,069 DEBUG Processing 512/653 atomic regions from SNP 153599 to 154199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,213 DEBUG Processing 633/1032 atomic regions from SNP 189723 to 190323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,223 DEBUG Processing 732/865 atomic regions from SNP 219555 to 220155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,235 DEBUG Processing 173/235 atomic regions from SNP 51633 to 52233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:48,248 DEBUG Processing 701/909 atomic regions from SNP 210214 to 210814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,302 DEBUG Processing 593/1140 atomic regions from SNP 177658 to 178258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,343 DEBUG Processing 513/653 atomic regions from SNP 153899 to 154499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,492 DEBUG Processing 634/1032 atomic regions from SNP 190023 to 190623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,493 DEBUG Processing 174/235 atomic regions from SNP 51933 to 52533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:48,524 DEBUG Processing 702/909 atomic regions from SNP 210514 to 211114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,527 DEBUG Processing 733/865 atomic regions from SNP 219855 to 220455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,602 DEBUG Processing 594/1140 atomic regions from SNP 177958 to 178558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,617 DEBUG Processing 514/653 atomic regions from SNP 154199 to 154799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,749 DEBUG Processing 175/235 atomic regions from SNP 52233 to 52833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:48,778 DEBUG Processing 635/1032 atomic regions from SNP 190323 to 190923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,791 DEBUG Processing 703/909 atomic regions from SNP 210814 to 211414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,822 DEBUG Processing 734/865 atomic regions from SNP 220155 to 220755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,891 DEBUG Processing 595/1140 atomic regions from SNP 178258 to 178858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,904 DEBUG Processing 515/653 atomic regions from SNP 154499 to 155099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,997 DEBUG Processing 176/235 atomic regions from SNP 52533 to 53133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:49,053 DEBUG Processing 704/909 atomic regions from SNP 211114 to 211714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,066 DEBUG Processing 636/1032 atomic regions from SNP 190623 to 191223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,103 DEBUG Processing 735/865 atomic regions from SNP 220455 to 221055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,174 DEBUG Processing 596/1140 atomic regions from SNP 178558 to 179158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,196 DEBUG Processing 516/653 atomic regions from SNP 154799 to 155399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,246 DEBUG Processing 177/235 atomic regions from SNP 52833 to 53433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:49,310 DEBUG Processing 705/909 atomic regions from SNP 211414 to 212014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,340 DEBUG Processing 637/1032 atomic regions from SNP 190923 to 191523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,362 DEBUG Processing 736/865 atomic regions from SNP 220755 to 221355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,459 DEBUG Processing 597/1140 atomic regions from SNP 178858 to 179458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,491 DEBUG Processing 517/653 atomic regions from SNP 155099 to 155699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,497 DEBUG Processing 178/235 atomic regions from SNP 53133 to 53733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:49,574 DEBUG Processing 706/909 atomic regions from SNP 211714 to 212314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,612 DEBUG Processing 638/1032 atomic regions from SNP 191223 to 191823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,620 DEBUG Processing 737/865 atomic regions from SNP 221055 to 221655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,740 DEBUG Processing 598/1140 atomic regions from SNP 179158 to 179758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,747 DEBUG Processing 179/235 atomic regions from SNP 53433 to 54033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:49,769 DEBUG Processing 518/653 atomic regions from SNP 155399 to 155999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,841 DEBUG Processing 707/909 atomic regions from SNP 212014 to 212614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,882 DEBUG Processing 639/1032 atomic regions from SNP 191523 to 192123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,884 DEBUG Processing 738/865 atomic regions from SNP 221355 to 221955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,994 DEBUG Processing 180/235 atomic regions from SNP 53733 to 54333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:50,027 DEBUG Processing 599/1140 atomic regions from SNP 179458 to 180058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,045 DEBUG Processing 519/653 atomic regions from SNP 155699 to 156299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,110 DEBUG Processing 708/909 atomic regions from SNP 212314 to 212914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,150 DEBUG Processing 739/865 atomic regions from SNP 221655 to 222255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,156 DEBUG Processing 640/1032 atomic regions from SNP 191823 to 192423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,240 DEBUG Processing 181/235 atomic regions from SNP 54033 to 54633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:50,313 DEBUG Processing 600/1140 atomic regions from SNP 179758 to 180358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,334 DEBUG Processing 520/653 atomic regions from SNP 155999 to 156599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,383 DEBUG Processing 709/909 atomic regions from SNP 212614 to 213214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,417 DEBUG Processing 740/865 atomic regions from SNP 221955 to 222555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,430 DEBUG Processing 641/1032 atomic regions from SNP 192123 to 192723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,489 DEBUG Processing 182/235 atomic regions from SNP 54333 to 54933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:50,605 DEBUG Processing 601/1140 atomic regions from SNP 180058 to 180658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,627 DEBUG Processing 521/653 atomic regions from SNP 156299 to 156899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,659 DEBUG Processing 710/909 atomic regions from SNP 212914 to 213514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,685 DEBUG Processing 741/865 atomic regions from SNP 222255 to 222855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,702 DEBUG Processing 642/1032 atomic regions from SNP 192423 to 193023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,742 DEBUG Processing 183/235 atomic regions from SNP 54633 to 55233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:50,895 DEBUG Processing 602/1140 atomic regions from SNP 180358 to 180958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,923 DEBUG Processing 522/653 atomic regions from SNP 156599 to 157199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,937 DEBUG Processing 711/909 atomic regions from SNP 213214 to 213814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,957 DEBUG Processing 742/865 atomic regions from SNP 222555 to 223155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,978 DEBUG Processing 643/1032 atomic regions from SNP 192723 to 193323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,998 DEBUG Processing 184/235 atomic regions from SNP 54933 to 55533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:51,178 DEBUG Processing 603/1140 atomic regions from SNP 180658 to 181258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,213 DEBUG Processing 712/909 atomic regions from SNP 213514 to 214114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,213 DEBUG Processing 523/653 atomic regions from SNP 156899 to 157499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,230 DEBUG Processing 743/865 atomic regions from SNP 222855 to 223455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,260 DEBUG Processing 185/235 atomic regions from SNP 55233 to 55833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:51,261 DEBUG Processing 644/1032 atomic regions from SNP 193023 to 193623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,472 DEBUG Processing 604/1140 atomic regions from SNP 180958 to 181558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,492 DEBUG Processing 713/909 atomic regions from SNP 213814 to 214414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,506 DEBUG Processing 744/865 atomic regions from SNP 223155 to 223755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,509 DEBUG Processing 524/653 atomic regions from SNP 157199 to 157799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,519 DEBUG Processing 186/235 atomic regions from SNP 55533 to 56133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:51,546 DEBUG Processing 645/1032 atomic regions from SNP 193323 to 193923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,767 DEBUG Processing 605/1140 atomic regions from SNP 181258 to 181858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,773 DEBUG Processing 714/909 atomic regions from SNP 214114 to 214714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,783 DEBUG Processing 745/865 atomic regions from SNP 223455 to 224055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,785 DEBUG Processing 187/235 atomic regions from SNP 55833 to 56433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:51,814 DEBUG Processing 525/653 atomic regions from SNP 157499 to 158099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,829 DEBUG Processing 646/1032 atomic regions from SNP 193623 to 194223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,051 DEBUG Processing 188/235 atomic regions from SNP 56133 to 56733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:52,054 DEBUG Processing 715/909 atomic regions from SNP 214414 to 215014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,061 DEBUG Processing 746/865 atomic regions from SNP 223755 to 224355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,078 DEBUG Processing 606/1140 atomic regions from SNP 181558 to 182158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,116 DEBUG Processing 526/653 atomic regions from SNP 157799 to 158399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,121 DEBUG Processing 647/1032 atomic regions from SNP 193923 to 194523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,307 DEBUG Processing 189/235 atomic regions from SNP 56433 to 57033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:52,333 DEBUG Processing 747/865 atomic regions from SNP 224055 to 224655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,336 DEBUG Processing 716/909 atomic regions from SNP 214714 to 215314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,389 DEBUG Processing 607/1140 atomic regions from SNP 181858 to 182458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,408 DEBUG Processing 648/1032 atomic regions from SNP 194223 to 194823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,419 DEBUG Processing 527/653 atomic regions from SNP 158099 to 158699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,551 DEBUG Processing 190/235 atomic regions from SNP 56733 to 57333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:52,595 DEBUG Processing 748/865 atomic regions from SNP 224355 to 224955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,606 DEBUG Processing 717/909 atomic regions from SNP 215014 to 215614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,689 DEBUG Processing 608/1140 atomic regions from SNP 182158 to 182758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,708 DEBUG Processing 649/1032 atomic regions from SNP 194523 to 195123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,716 DEBUG Processing 528/653 atomic regions from SNP 158399 to 158999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,795 DEBUG Processing 191/235 atomic regions from SNP 57033 to 57633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:52,853 DEBUG Processing 749/865 atomic regions from SNP 224655 to 225255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,875 DEBUG Processing 718/909 atomic regions from SNP 215314 to 215914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,988 DEBUG Processing 609/1140 atomic regions from SNP 182458 to 183058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,004 DEBUG Processing 650/1032 atomic regions from SNP 194823 to 195423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,015 DEBUG Processing 529/653 atomic regions from SNP 158699 to 159299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,047 DEBUG Processing 192/235 atomic regions from SNP 57333 to 57933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:53,110 DEBUG Processing 750/865 atomic regions from SNP 224955 to 225555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,153 DEBUG Processing 719/909 atomic regions from SNP 215614 to 216214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,286 DEBUG Processing 610/1140 atomic regions from SNP 182758 to 183358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,289 DEBUG Processing 651/1032 atomic regions from SNP 195123 to 195723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,299 DEBUG Processing 193/235 atomic regions from SNP 57633 to 58233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:53,310 DEBUG Processing 530/653 atomic regions from SNP 158999 to 159599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,371 DEBUG Processing 751/865 atomic regions from SNP 225255 to 225855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,451 DEBUG Processing 720/909 atomic regions from SNP 215914 to 216514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,558 DEBUG Processing 194/235 atomic regions from SNP 57933 to 58533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:53,568 DEBUG Processing 652/1032 atomic regions from SNP 195423 to 196023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,582 DEBUG Processing 611/1140 atomic regions from SNP 183058 to 183658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,601 DEBUG Processing 531/653 atomic regions from SNP 159299 to 159899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,639 DEBUG Processing 752/865 atomic regions from SNP 225555 to 226155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,755 DEBUG Processing 721/909 atomic regions from SNP 216214 to 216814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,807 DEBUG Processing 195/235 atomic regions from SNP 58233 to 58833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:53,848 DEBUG Processing 653/1032 atomic regions from SNP 195723 to 196323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,874 DEBUG Processing 612/1140 atomic regions from SNP 183358 to 183958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,895 DEBUG Processing 532/653 atomic regions from SNP 159599 to 160199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,901 DEBUG Processing 753/865 atomic regions from SNP 225855 to 226455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,050 DEBUG Processing 722/909 atomic regions from SNP 216514 to 217114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,053 DEBUG Processing 196/235 atomic regions from SNP 58533 to 59133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:54,127 DEBUG Processing 654/1032 atomic regions from SNP 196023 to 196623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,163 DEBUG Processing 754/865 atomic regions from SNP 226155 to 226755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,167 DEBUG Processing 613/1140 atomic regions from SNP 183658 to 184258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,183 DEBUG Processing 533/653 atomic regions from SNP 159899 to 160499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,307 DEBUG Processing 197/235 atomic regions from SNP 58833 to 59433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:54,345 DEBUG Processing 723/909 atomic regions from SNP 216814 to 217414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,409 DEBUG Processing 655/1032 atomic regions from SNP 196323 to 196923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,416 DEBUG Processing 755/865 atomic regions from SNP 226455 to 227055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,455 DEBUG Processing 614/1140 atomic regions from SNP 183958 to 184558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,462 DEBUG Processing 534/653 atomic regions from SNP 160199 to 160799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,563 DEBUG Processing 198/235 atomic regions from SNP 59133 to 59733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:54,625 DEBUG Processing 724/909 atomic regions from SNP 217114 to 217714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,674 DEBUG Processing 756/865 atomic regions from SNP 226755 to 227355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,690 DEBUG Processing 656/1032 atomic regions from SNP 196623 to 197223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,742 DEBUG Processing 615/1140 atomic regions from SNP 184258 to 184858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,746 DEBUG Processing 535/653 atomic regions from SNP 160499 to 161099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,814 DEBUG Processing 199/235 atomic regions from SNP 59433 to 60033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:54,902 DEBUG Processing 725/909 atomic regions from SNP 217414 to 218014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,940 DEBUG Processing 757/865 atomic regions from SNP 227055 to 227655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,966 DEBUG Processing 657/1032 atomic regions from SNP 196923 to 197523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,030 DEBUG Processing 616/1140 atomic regions from SNP 184558 to 185158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,033 DEBUG Processing 536/653 atomic regions from SNP 160799 to 161399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,063 DEBUG Processing 200/235 atomic regions from SNP 59733 to 60333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:55,169 DEBUG Processing 726/909 atomic regions from SNP 217714 to 218314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,202 DEBUG Processing 758/865 atomic regions from SNP 227355 to 227955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,239 DEBUG Processing 658/1032 atomic regions from SNP 197223 to 197823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,310 DEBUG Processing 201/235 atomic regions from SNP 60033 to 60633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:55,319 DEBUG Processing 537/653 atomic regions from SNP 161099 to 161699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,323 DEBUG Processing 617/1140 atomic regions from SNP 184858 to 185458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,430 DEBUG Processing 727/909 atomic regions from SNP 218014 to 218614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,468 DEBUG Processing 759/865 atomic regions from SNP 227655 to 228255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,513 DEBUG Processing 659/1032 atomic regions from SNP 197523 to 198123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,567 DEBUG Processing 202/235 atomic regions from SNP 60333 to 60933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:55,605 DEBUG Processing 538/653 atomic regions from SNP 161399 to 161999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,622 DEBUG Processing 618/1140 atomic regions from SNP 185158 to 185758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,686 DEBUG Processing 728/909 atomic regions from SNP 218314 to 218914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,751 DEBUG Processing 760/865 atomic regions from SNP 227955 to 228555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,792 DEBUG Processing 660/1032 atomic regions from SNP 197823 to 198423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,824 DEBUG Processing 203/235 atomic regions from SNP 60633 to 61233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:55,897 DEBUG Processing 539/653 atomic regions from SNP 161699 to 162299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,921 DEBUG Processing 619/1140 atomic regions from SNP 185458 to 186058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,945 DEBUG Processing 729/909 atomic regions from SNP 218614 to 219214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,035 DEBUG Processing 761/865 atomic regions from SNP 228255 to 228855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,069 DEBUG Processing 661/1032 atomic regions from SNP 198123 to 198723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,076 DEBUG Processing 204/235 atomic regions from SNP 60933 to 61533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,178 DEBUG Processing 540/653 atomic regions from SNP 161999 to 162599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,203 DEBUG Processing 730/909 atomic regions from SNP 218914 to 219514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,216 DEBUG Processing 620/1140 atomic regions from SNP 185758 to 186358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,331 DEBUG Processing 762/865 atomic regions from SNP 228555 to 229155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,331 DEBUG Processing 205/235 atomic regions from SNP 61233 to 61833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,357 DEBUG Processing 662/1032 atomic regions from SNP 198423 to 199023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,459 DEBUG Processing 541/653 atomic regions from SNP 162299 to 162899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,462 DEBUG Processing 731/909 atomic regions from SNP 219214 to 219814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,506 DEBUG Processing 621/1140 atomic regions from SNP 186058 to 186658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,582 DEBUG Processing 206/235 atomic regions from SNP 61533 to 62133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,625 DEBUG Processing 763/865 atomic regions from SNP 228855 to 229455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,632 DEBUG Processing 663/1032 atomic regions from SNP 198723 to 199323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,722 DEBUG Processing 542/653 atomic regions from SNP 162599 to 163199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,739 DEBUG Processing 732/909 atomic regions from SNP 219514 to 220114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,799 DEBUG Processing 622/1140 atomic regions from SNP 186358 to 186958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,835 DEBUG Processing 207/235 atomic regions from SNP 61833 to 62433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,913 DEBUG Processing 664/1032 atomic regions from SNP 199023 to 199623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,914 DEBUG Processing 764/865 atomic regions from SNP 229155 to 229755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,982 DEBUG Processing 543/653 atomic regions from SNP 162899 to 163499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,021 DEBUG Processing 733/909 atomic regions from SNP 219814 to 220414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,082 DEBUG Processing 208/235 atomic regions from SNP 62133 to 62733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,087 DEBUG Processing 623/1140 atomic regions from SNP 186658 to 187258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,198 DEBUG Processing 665/1032 atomic regions from SNP 199323 to 199923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,222 DEBUG Processing 765/865 atomic regions from SNP 229455 to 230055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,260 DEBUG Processing 544/653 atomic regions from SNP 163199 to 163799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,307 DEBUG Processing 734/909 atomic regions from SNP 220114 to 220714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,332 DEBUG Processing 209/235 atomic regions from SNP 62433 to 63033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,385 DEBUG Processing 624/1140 atomic regions from SNP 186958 to 187558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,475 DEBUG Processing 666/1032 atomic regions from SNP 199623 to 200223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,516 DEBUG Processing 766/865 atomic regions from SNP 229755 to 230355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,541 DEBUG Processing 545/653 atomic regions from SNP 163499 to 164099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,586 DEBUG Processing 210/235 atomic regions from SNP 62733 to 63333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,606 DEBUG Processing 735/909 atomic regions from SNP 220414 to 221014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,685 DEBUG Processing 625/1140 atomic regions from SNP 187258 to 187858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,745 DEBUG Processing 667/1032 atomic regions from SNP 199923 to 200523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,799 DEBUG Processing 767/865 atomic regions from SNP 230055 to 230655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,833 DEBUG Processing 546/653 atomic regions from SNP 163799 to 164399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,845 DEBUG Processing 211/235 atomic regions from SNP 63033 to 63633 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,896 DEBUG Processing 736/909 atomic regions from SNP 220714 to 221314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,979 DEBUG Processing 626/1140 atomic regions from SNP 187558 to 188158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,022 DEBUG Processing 668/1032 atomic regions from SNP 200223 to 200823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,087 DEBUG Processing 768/865 atomic regions from SNP 230355 to 230955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,103 DEBUG Processing 212/235 atomic regions from SNP 63333 to 63933 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,116 DEBUG Processing 547/653 atomic regions from SNP 164099 to 164699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,172 DEBUG Processing 737/909 atomic regions from SNP 221014 to 221614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,284 DEBUG Processing 627/1140 atomic regions from SNP 187858 to 188458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,313 DEBUG Processing 669/1032 atomic regions from SNP 200523 to 201123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,354 DEBUG Processing 213/235 atomic regions from SNP 63633 to 64233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,368 DEBUG Processing 769/865 atomic regions from SNP 230655 to 231255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,390 DEBUG Processing 548/653 atomic regions from SNP 164399 to 164999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,438 DEBUG Processing 738/909 atomic regions from SNP 221314 to 221914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,582 DEBUG Processing 628/1140 atomic regions from SNP 188158 to 188758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,595 DEBUG Processing 670/1032 atomic regions from SNP 200823 to 201423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,606 DEBUG Processing 214/235 atomic regions from SNP 63933 to 64533 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,646 DEBUG Processing 770/865 atomic regions from SNP 230955 to 231555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,663 DEBUG Processing 549/653 atomic regions from SNP 164699 to 165299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,694 DEBUG Processing 739/909 atomic regions from SNP 221614 to 222214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,870 DEBUG Processing 215/235 atomic regions from SNP 64233 to 64833 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,876 DEBUG Processing 671/1032 atomic regions from SNP 201123 to 201723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,876 DEBUG Processing 629/1140 atomic regions from SNP 188458 to 189058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,932 DEBUG Processing 771/865 atomic regions from SNP 231255 to 231855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,934 DEBUG Processing 550/653 atomic regions from SNP 164999 to 165599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,972 DEBUG Processing 740/909 atomic regions from SNP 221914 to 222514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,128 DEBUG Processing 216/235 atomic regions from SNP 64533 to 65133 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,158 DEBUG Processing 672/1032 atomic regions from SNP 201423 to 202023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,174 DEBUG Processing 630/1140 atomic regions from SNP 188758 to 189358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,213 DEBUG Processing 551/653 atomic regions from SNP 165299 to 165899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,220 DEBUG Processing 772/865 atomic regions from SNP 231555 to 232155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,249 DEBUG Processing 741/909 atomic regions from SNP 222214 to 222814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,375 DEBUG Processing 217/235 atomic regions from SNP 64833 to 65433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,441 DEBUG Processing 673/1032 atomic regions from SNP 201723 to 202323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,472 DEBUG Processing 631/1140 atomic regions from SNP 189058 to 189658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,494 DEBUG Processing 552/653 atomic regions from SNP 165599 to 166199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,497 DEBUG Processing 773/865 atomic regions from SNP 231855 to 232455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,523 DEBUG Processing 742/909 atomic regions from SNP 222514 to 223114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,619 DEBUG Processing 218/235 atomic regions from SNP 65133 to 65733 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,720 DEBUG Processing 674/1032 atomic regions from SNP 202023 to 202623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,761 DEBUG Processing 774/865 atomic regions from SNP 232155 to 232755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,763 DEBUG Processing 632/1140 atomic regions from SNP 189358 to 189958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,766 DEBUG Processing 553/653 atomic regions from SNP 165899 to 166499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,794 DEBUG Processing 743/909 atomic regions from SNP 222814 to 223414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,865 DEBUG Processing 219/235 atomic regions from SNP 65433 to 66033 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,993 DEBUG Processing 675/1032 atomic regions from SNP 202323 to 202923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,041 DEBUG Processing 775/865 atomic regions from SNP 232455 to 233055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,052 DEBUG Processing 633/1140 atomic regions from SNP 189658 to 190258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,062 DEBUG Processing 554/653 atomic regions from SNP 166199 to 166799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,078 DEBUG Processing 744/909 atomic regions from SNP 223114 to 223714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,113 DEBUG Processing 220/235 atomic regions from SNP 65733 to 66333 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,263 DEBUG Processing 676/1032 atomic regions from SNP 202623 to 203223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,321 DEBUG Processing 776/865 atomic regions from SNP 232755 to 233355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,351 DEBUG Processing 555/653 atomic regions from SNP 166499 to 167099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,354 DEBUG Processing 634/1140 atomic regions from SNP 189958 to 190558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,368 DEBUG Processing 221/235 atomic regions from SNP 66033 to 66633 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,375 DEBUG Processing 745/909 atomic regions from SNP 223414 to 224014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,537 DEBUG Processing 677/1032 atomic regions from SNP 202923 to 203523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,617 DEBUG Processing 777/865 atomic regions from SNP 233055 to 233655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,625 DEBUG Processing 222/235 atomic regions from SNP 66333 to 66933 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,630 DEBUG Processing 556/653 atomic regions from SNP 166799 to 167399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,650 DEBUG Processing 635/1140 atomic regions from SNP 190258 to 190858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,668 DEBUG Processing 746/909 atomic regions from SNP 223714 to 224314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,810 DEBUG Processing 678/1032 atomic regions from SNP 203223 to 203823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,881 DEBUG Processing 223/235 atomic regions from SNP 66633 to 67233 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,908 DEBUG Processing 557/653 atomic regions from SNP 167099 to 167699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,911 DEBUG Processing 778/865 atomic regions from SNP 233355 to 233955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,942 DEBUG Processing 636/1140 atomic regions from SNP 190558 to 191158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,947 DEBUG Processing 747/909 atomic regions from SNP 224014 to 224614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,082 DEBUG Processing 679/1032 atomic regions from SNP 203523 to 204123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,139 DEBUG Processing 224/235 atomic regions from SNP 66933 to 67533 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,186 DEBUG Processing 558/653 atomic regions from SNP 167399 to 167999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,206 DEBUG Processing 779/865 atomic regions from SNP 233655 to 234255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,213 DEBUG Processing 748/909 atomic regions from SNP 224314 to 224914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,234 DEBUG Processing 637/1140 atomic regions from SNP 190858 to 191458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,359 DEBUG Processing 680/1032 atomic regions from SNP 203823 to 204423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,402 DEBUG Processing 225/235 atomic regions from SNP 67233 to 67833 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,476 DEBUG Processing 559/653 atomic regions from SNP 167699 to 168299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,483 DEBUG Processing 749/909 atomic regions from SNP 224614 to 225214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,504 DEBUG Processing 780/865 atomic regions from SNP 233955 to 234555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,524 DEBUG Processing 638/1140 atomic regions from SNP 191158 to 191758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,633 DEBUG Processing 681/1032 atomic regions from SNP 204123 to 204723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,668 DEBUG Processing 226/235 atomic regions from SNP 67533 to 68133 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,755 DEBUG Processing 750/909 atomic regions from SNP 224914 to 225514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,769 DEBUG Processing 560/653 atomic regions from SNP 167999 to 168599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,804 DEBUG Processing 781/865 atomic regions from SNP 234255 to 234855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,809 DEBUG Processing 639/1140 atomic regions from SNP 191458 to 192058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,906 DEBUG Processing 682/1032 atomic regions from SNP 204423 to 205023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,925 DEBUG Processing 227/235 atomic regions from SNP 67833 to 68433 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,026 DEBUG Processing 751/909 atomic regions from SNP 225214 to 225814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,047 DEBUG Processing 561/653 atomic regions from SNP 168299 to 168899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,098 DEBUG Processing 640/1140 atomic regions from SNP 191758 to 192358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,104 DEBUG Processing 782/865 atomic regions from SNP 234555 to 235155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,173 DEBUG Processing 228/235 atomic regions from SNP 68133 to 68733 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,184 DEBUG Processing 683/1032 atomic regions from SNP 204723 to 205323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,296 DEBUG Processing 752/909 atomic regions from SNP 225514 to 226114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,334 DEBUG Processing 562/653 atomic regions from SNP 168599 to 169199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,384 DEBUG Processing 783/865 atomic regions from SNP 234855 to 235455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,388 DEBUG Processing 641/1140 atomic regions from SNP 192058 to 192658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,425 DEBUG Processing 229/235 atomic regions from SNP 68433 to 69033 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,464 DEBUG Processing 684/1032 atomic regions from SNP 205023 to 205623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,567 DEBUG Processing 753/909 atomic regions from SNP 225814 to 226414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,626 DEBUG Processing 563/653 atomic regions from SNP 168899 to 169499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,676 DEBUG Processing 230/235 atomic regions from SNP 68733 to 69333 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,679 DEBUG Processing 784/865 atomic regions from SNP 235155 to 235755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,687 DEBUG Processing 642/1140 atomic regions from SNP 192358 to 192958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,742 DEBUG Processing 685/1032 atomic regions from SNP 205323 to 205923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,833 DEBUG Processing 754/909 atomic regions from SNP 226114 to 226714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,920 DEBUG Processing 564/653 atomic regions from SNP 169199 to 169799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,936 DEBUG Processing 231/235 atomic regions from SNP 69033 to 69633 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,964 DEBUG Processing 785/865 atomic regions from SNP 235455 to 236055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,982 DEBUG Processing 643/1140 atomic regions from SNP 192658 to 193258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,022 DEBUG Processing 686/1032 atomic regions from SNP 205623 to 206223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,095 DEBUG Processing 755/909 atomic regions from SNP 226414 to 227014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,194 DEBUG Processing 565/653 atomic regions from SNP 169499 to 170099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,200 DEBUG Processing 232/235 atomic regions from SNP 69333 to 69933 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,237 DEBUG Processing 786/865 atomic regions from SNP 235755 to 236355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,284 DEBUG Processing 644/1140 atomic regions from SNP 192958 to 193558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,315 DEBUG Processing 687/1032 atomic regions from SNP 205923 to 206523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,362 DEBUG Processing 756/909 atomic regions from SNP 226714 to 227314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,460 DEBUG Processing 233/235 atomic regions from SNP 69633 to 70233 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,468 DEBUG Processing 566/653 atomic regions from SNP 169799 to 170399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,504 DEBUG Processing 787/865 atomic regions from SNP 236055 to 236655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,577 DEBUG Processing 645/1140 atomic regions from SNP 193258 to 193858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,622 DEBUG Processing 688/1032 atomic regions from SNP 206223 to 206823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,630 DEBUG Processing 757/909 atomic regions from SNP 227014 to 227614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,722 DEBUG Processing 234/235 atomic regions from SNP 69933 to 70533 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,737 DEBUG Processing 567/653 atomic regions from SNP 170099 to 170699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,771 DEBUG Processing 788/865 atomic regions from SNP 236355 to 236955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,866 DEBUG Processing 646/1140 atomic regions from SNP 193558 to 194158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,900 DEBUG Processing 758/909 atomic regions from SNP 227314 to 227914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,933 DEBUG Processing 689/1032 atomic regions from SNP 206523 to 207123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,981 DEBUG Processing 235/235 atomic regions from SNP 70233 to 70833 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:04,013 DEBUG Processing 568/653 atomic regions from SNP 170399 to 170999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,040 DEBUG Processing 789/865 atomic regions from SNP 236655 to 237255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,133 DEBUG Unique SNPs positions in subchromosome 5: 70834 2025-01-31 09:46:04,148 DEBUG Processing 647/1140 atomic regions from SNP 193858 to 194458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,174 DEBUG Processing 759/909 atomic regions from SNP 227614 to 228214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,234 DEBUG Processing 690/1032 atomic regions from SNP 206823 to 207423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,290 DEBUG Subchromosome time: 66.63645236403681, subchromosome SNPs: 70834 2025-01-31 09:46:04,290 DEBUG Estimated BADs: [1.03, 2.06, 1.03, 0.00, 0.00, 2.06, 1.03, 2.06, 1.03, 2.06, 1.03, 2.06, 1.03, 2.06, 1.03, 0.26, 0.34, 1.03, 0.51, 1.03, 0.51, 1.03, 10.28] SNP counts: [3860, 12186, 17024, 3, 58, 6113, 14521, 4621, 32576, 6962, 29703, 1415, 7232, 8096, 15915, 16080, 13020, 11107, 12994, 3212, 11406, 19056, 39] SNP IDs counts: [3860, 12186, 17024, 3, 58, 6113, 14521, 4621, 32576, 6962, 29703, 1415, 7232, 8096, 15915, 16080, 13020, 11107, 12994, 3212, 11406, 19056, 39] Critical gap: 751442bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.52Mbp, 14.60Mbp, 26.92Mbp[1.11Mbp], 28.73Mbp[0.83Mbp], 29.68Mbp[1.45Mbp], 39.27Mbp, 47.91Mbp, 50.64Mbp, 71.27Mbp, 75.67Mbp, 93.71Mbp, 94.49Mbp, 99.02Mbp, 103.59Mbp, 113.26Mbp, 124.23Mbp[1.77Mbp], 133.92Mbp, 140.52Mbp, 150.43Mbp, 152.27Mbp, 159.24Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:46:04,290 DEBUG chrX time: 66.63702138804365 s 2025-01-31 09:46:04,303 DEBUG Processing 569/653 atomic regions from SNP 170699 to 171299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,324 DEBUG Processing 790/865 atomic regions from SNP 236955 to 237555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,435 DEBUG Processing 648/1140 atomic regions from SNP 194158 to 194758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,445 DEBUG Processing 760/909 atomic regions from SNP 227914 to 228514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,464 DEBUG chrX: Fitting background model for 21 segments 2025-01-31 09:46:04,533 DEBUG Processing 691/1032 atomic regions from SNP 207123 to 207723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,594 DEBUG Processing 570/653 atomic regions from SNP 170999 to 171599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,624 DEBUG Processing 791/865 atomic regions from SNP 237255 to 237855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,717 DEBUG Processing 761/909 atomic regions from SNP 228214 to 228814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,726 DEBUG Processing 649/1140 atomic regions from SNP 194458 to 195058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,833 DEBUG Processing 692/1032 atomic regions from SNP 207423 to 208023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,893 DEBUG Processing 571/653 atomic regions from SNP 171299 to 171899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,927 DEBUG Processing 792/865 atomic regions from SNP 237555 to 238155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,991 DEBUG Processing 762/909 atomic regions from SNP 228514 to 229114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,008 DEBUG Processing 650/1140 atomic regions from SNP 194758 to 195358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,129 DEBUG Processing 693/1032 atomic regions from SNP 207723 to 208323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,195 DEBUG Processing 572/653 atomic regions from SNP 171599 to 172199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,232 DEBUG Processing 793/865 atomic regions from SNP 237855 to 238455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,271 DEBUG Processing 763/909 atomic regions from SNP 228814 to 229414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,292 DEBUG Processing 651/1140 atomic regions from SNP 195058 to 195658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,414 DEBUG Processing 694/1032 atomic regions from SNP 208023 to 208623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,498 DEBUG Processing 573/653 atomic regions from SNP 171899 to 172499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,545 DEBUG Processing 794/865 atomic regions from SNP 238155 to 238755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,557 DEBUG Processing 764/909 atomic regions from SNP 229114 to 229714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,587 DEBUG Processing 652/1140 atomic regions from SNP 195358 to 195958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,700 DEBUG Processing 695/1032 atomic regions from SNP 208323 to 208923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,803 DEBUG Processing 574/653 atomic regions from SNP 172199 to 172799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,835 DEBUG Processing 765/909 atomic regions from SNP 229414 to 230014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,850 DEBUG Processing 795/865 atomic regions from SNP 238455 to 239055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,870 DEBUG Processing 653/1140 atomic regions from SNP 195658 to 196258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,993 DEBUG Processing 696/1032 atomic regions from SNP 208623 to 209223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,101 DEBUG Processing 575/653 atomic regions from SNP 172499 to 173099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,113 DEBUG Processing 766/909 atomic regions from SNP 229714 to 230314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,143 DEBUG Processing 796/865 atomic regions from SNP 238755 to 239355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,151 DEBUG Processing 654/1140 atomic regions from SNP 195958 to 196558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,300 DEBUG Processing 697/1032 atomic regions from SNP 208923 to 209523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,392 DEBUG Processing 576/653 atomic regions from SNP 172799 to 173399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,413 DEBUG Processing 767/909 atomic regions from SNP 230014 to 230614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,435 DEBUG Processing 797/865 atomic regions from SNP 239055 to 239655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,444 DEBUG Processing 655/1140 atomic regions from SNP 196258 to 196858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,594 DEBUG Processing 698/1032 atomic regions from SNP 209223 to 209823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,679 DEBUG Processing 577/653 atomic regions from SNP 173099 to 173699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,721 DEBUG Processing 768/909 atomic regions from SNP 230314 to 230914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,735 DEBUG Processing 656/1140 atomic regions from SNP 196558 to 197158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,738 DEBUG Processing 798/865 atomic regions from SNP 239355 to 239955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,876 DEBUG Processing 699/1032 atomic regions from SNP 209523 to 210123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,943 DEBUG Processing 578/653 atomic regions from SNP 173399 to 173999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,020 DEBUG Processing 769/909 atomic regions from SNP 230614 to 231214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,030 DEBUG Processing 657/1140 atomic regions from SNP 196858 to 197458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,045 DEBUG Processing 799/865 atomic regions from SNP 239655 to 240255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,159 DEBUG Processing 700/1032 atomic regions from SNP 209823 to 210423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,202 DEBUG Processing 579/653 atomic regions from SNP 173699 to 174299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,323 DEBUG Processing 770/909 atomic regions from SNP 230914 to 231514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,328 DEBUG Processing 658/1140 atomic regions from SNP 197158 to 197758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,351 DEBUG Processing 800/865 atomic regions from SNP 239955 to 240555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,435 DEBUG Processing 701/1032 atomic regions from SNP 210123 to 210723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,462 DEBUG Processing 580/653 atomic regions from SNP 173999 to 174599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,604 DEBUG Processing 771/909 atomic regions from SNP 231214 to 231814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,611 DEBUG Processing 659/1140 atomic regions from SNP 197458 to 198058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,614 DEBUG Processing 801/865 atomic regions from SNP 240255 to 240855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,709 DEBUG Processing 702/1032 atomic regions from SNP 210423 to 211023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,725 DEBUG Processing 581/653 atomic regions from SNP 174299 to 174899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,867 DEBUG Processing 772/909 atomic regions from SNP 231514 to 232114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,871 DEBUG Processing 802/865 atomic regions from SNP 240555 to 241155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,890 DEBUG Processing 660/1140 atomic regions from SNP 197758 to 198358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,984 DEBUG Processing 582/653 atomic regions from SNP 174599 to 175199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,993 DEBUG Processing 703/1032 atomic regions from SNP 210723 to 211323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,125 DEBUG Processing 803/865 atomic regions from SNP 240855 to 241455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,126 DEBUG Processing 773/909 atomic regions from SNP 231814 to 232414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,168 DEBUG Processing 661/1140 atomic regions from SNP 198058 to 198658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,246 DEBUG Processing 583/653 atomic regions from SNP 174899 to 175499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,284 DEBUG Processing 704/1032 atomic regions from SNP 211023 to 211623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,387 DEBUG Processing 804/865 atomic regions from SNP 241155 to 241755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,392 DEBUG Processing 774/909 atomic regions from SNP 232114 to 232714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,456 DEBUG Processing 662/1140 atomic regions from SNP 198358 to 198958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,504 DEBUG Processing 584/653 atomic regions from SNP 175199 to 175799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,587 DEBUG Processing 705/1032 atomic regions from SNP 211323 to 211923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,656 DEBUG Processing 805/865 atomic regions from SNP 241455 to 242055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,664 DEBUG Processing 775/909 atomic regions from SNP 232414 to 233014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,737 DEBUG Processing 663/1140 atomic regions from SNP 198658 to 199258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,752 DEBUG Processing 585/653 atomic regions from SNP 175499 to 176099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,876 DEBUG Processing 706/1032 atomic regions from SNP 211623 to 212223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,931 DEBUG Processing 806/865 atomic regions from SNP 241755 to 242355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,944 DEBUG Processing 776/909 atomic regions from SNP 232714 to 233314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,012 DEBUG Processing 586/653 atomic regions from SNP 175799 to 176399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,020 DEBUG Processing 664/1140 atomic regions from SNP 198958 to 199558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,159 DEBUG Processing 707/1032 atomic regions from SNP 211923 to 212523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,202 DEBUG Processing 807/865 atomic regions from SNP 242055 to 242655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,220 DEBUG Processing 777/909 atomic regions from SNP 233014 to 233614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,275 DEBUG Processing 587/653 atomic regions from SNP 176099 to 176699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,300 DEBUG Processing 665/1140 atomic regions from SNP 199258 to 199858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,429 DEBUG Processing 708/1032 atomic regions from SNP 212223 to 212823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,470 DEBUG Processing 808/865 atomic regions from SNP 242355 to 242955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,501 DEBUG Processing 778/909 atomic regions from SNP 233314 to 233914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,548 DEBUG Processing 588/653 atomic regions from SNP 176399 to 176999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,595 DEBUG Processing 666/1140 atomic regions from SNP 199558 to 200158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,700 DEBUG Processing 709/1032 atomic regions from SNP 212523 to 213123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,737 DEBUG Processing 809/865 atomic regions from SNP 242655 to 243255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,784 DEBUG Processing 779/909 atomic regions from SNP 233614 to 234214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,821 DEBUG Processing 589/653 atomic regions from SNP 176699 to 177299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,890 DEBUG Processing 667/1140 atomic regions from SNP 199858 to 200458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,980 DEBUG Processing 710/1032 atomic regions from SNP 212823 to 213423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,023 DEBUG Processing 810/865 atomic regions from SNP 242955 to 243555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,072 DEBUG Processing 780/909 atomic regions from SNP 233914 to 234514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,100 DEBUG Processing 590/653 atomic regions from SNP 176999 to 177599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,185 DEBUG Processing 668/1140 atomic regions from SNP 200158 to 200758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,272 DEBUG Processing 711/1032 atomic regions from SNP 213123 to 213723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,319 DEBUG Processing 811/865 atomic regions from SNP 243255 to 243855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,358 DEBUG Processing 781/909 atomic regions from SNP 234214 to 234814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,372 DEBUG Processing 591/653 atomic regions from SNP 177299 to 177899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,477 DEBUG Processing 669/1140 atomic regions from SNP 200458 to 201058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,540 DEBUG Processing 712/1032 atomic regions from SNP 213423 to 214023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,609 DEBUG Processing 812/865 atomic regions from SNP 243555 to 244155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,638 DEBUG Processing 782/909 atomic regions from SNP 234514 to 235114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,644 DEBUG Processing 592/653 atomic regions from SNP 177599 to 178199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,766 DEBUG Processing 670/1140 atomic regions from SNP 200758 to 201358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,816 DEBUG Processing 713/1032 atomic regions from SNP 213723 to 214323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,902 DEBUG Processing 593/653 atomic regions from SNP 177899 to 178499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,906 DEBUG Processing 813/865 atomic regions from SNP 243855 to 244455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,907 DEBUG Processing 783/909 atomic regions from SNP 234814 to 235414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,048 DEBUG Processing 671/1140 atomic regions from SNP 201058 to 201658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,090 DEBUG Processing 714/1032 atomic regions from SNP 214023 to 214623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,181 DEBUG Processing 784/909 atomic regions from SNP 235114 to 235714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,181 DEBUG Processing 594/653 atomic regions from SNP 178199 to 178799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,203 DEBUG Processing 814/865 atomic regions from SNP 244155 to 244755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,330 DEBUG Processing 672/1140 atomic regions from SNP 201358 to 201958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,372 DEBUG Processing 715/1032 atomic regions from SNP 214323 to 214923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,452 DEBUG Processing 785/909 atomic regions from SNP 235414 to 236014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,453 DEBUG Processing 595/653 atomic regions from SNP 178499 to 179099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,479 DEBUG Processing 815/865 atomic regions from SNP 244455 to 245055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,617 DEBUG Processing 673/1140 atomic regions from SNP 201658 to 202258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,655 DEBUG Processing 716/1032 atomic regions from SNP 214623 to 215223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,718 DEBUG Processing 596/653 atomic regions from SNP 178799 to 179399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,724 DEBUG Processing 786/909 atomic regions from SNP 235714 to 236314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,764 DEBUG Processing 816/865 atomic regions from SNP 244755 to 245355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,903 DEBUG Processing 674/1140 atomic regions from SNP 201958 to 202558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,928 DEBUG Processing 717/1032 atomic regions from SNP 214923 to 215523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,973 DEBUG Processing 597/653 atomic regions from SNP 179099 to 179699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,992 DEBUG Processing 787/909 atomic regions from SNP 236014 to 236614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,047 DEBUG Processing 817/865 atomic regions from SNP 245055 to 245655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,181 DEBUG Processing 675/1140 atomic regions from SNP 202258 to 202858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,199 DEBUG Processing 718/1032 atomic regions from SNP 215223 to 215823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,222 DEBUG Processing 598/653 atomic regions from SNP 179399 to 179999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,250 DEBUG Processing 788/909 atomic regions from SNP 236314 to 236914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,330 DEBUG Processing 818/865 atomic regions from SNP 245355 to 245955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,484 DEBUG Processing 719/1032 atomic regions from SNP 215523 to 216123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,487 DEBUG Processing 599/653 atomic regions from SNP 179699 to 180299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,495 DEBUG Processing 676/1140 atomic regions from SNP 202558 to 203158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,528 DEBUG Processing 789/909 atomic regions from SNP 236614 to 237214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,620 DEBUG Processing 819/865 atomic regions from SNP 245655 to 246255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,741 DEBUG Processing 600/653 atomic regions from SNP 179999 to 180599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,759 DEBUG Processing 720/1032 atomic regions from SNP 215823 to 216423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,789 DEBUG Processing 790/909 atomic regions from SNP 236914 to 237514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,802 DEBUG Processing 677/1140 atomic regions from SNP 202858 to 203458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,900 DEBUG Processing 820/865 atomic regions from SNP 245955 to 246555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,994 DEBUG Processing 601/653 atomic regions from SNP 180299 to 180899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,027 DEBUG Processing 721/1032 atomic regions from SNP 216123 to 216723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,055 DEBUG Processing 791/909 atomic regions from SNP 237214 to 237814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,099 DEBUG Processing 678/1140 atomic regions from SNP 203158 to 203758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,187 DEBUG Processing 821/865 atomic regions from SNP 246255 to 246855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,276 DEBUG Processing 602/653 atomic regions from SNP 180599 to 181199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,300 DEBUG Processing 722/1032 atomic regions from SNP 216423 to 217023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,328 DEBUG Processing 792/909 atomic regions from SNP 237514 to 238114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,396 DEBUG Processing 679/1140 atomic regions from SNP 203458 to 204058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,475 DEBUG Processing 822/865 atomic regions from SNP 246555 to 247155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,561 DEBUG Processing 603/653 atomic regions from SNP 180899 to 181499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,567 DEBUG Processing 723/1032 atomic regions from SNP 216723 to 217323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,593 DEBUG Processing 793/909 atomic regions from SNP 237814 to 238414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,686 DEBUG Processing 680/1140 atomic regions from SNP 203758 to 204358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,732 DEBUG Processing 823/865 atomic regions from SNP 246855 to 247455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,832 DEBUG Processing 604/653 atomic regions from SNP 181199 to 181799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,833 DEBUG Processing 724/1032 atomic regions from SNP 217023 to 217623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,856 DEBUG Processing 794/909 atomic regions from SNP 238114 to 238714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,983 DEBUG Processing 681/1140 atomic regions from SNP 204058 to 204658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,990 DEBUG Processing 824/865 atomic regions from SNP 247155 to 247755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,100 DEBUG Processing 725/1032 atomic regions from SNP 217323 to 217923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,105 DEBUG Processing 605/653 atomic regions from SNP 181499 to 182099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,117 DEBUG Processing 795/909 atomic regions from SNP 238414 to 239014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,263 DEBUG Processing 825/865 atomic regions from SNP 247455 to 248055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,282 DEBUG Processing 682/1140 atomic regions from SNP 204358 to 204958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,371 DEBUG Processing 726/1032 atomic regions from SNP 217623 to 218223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,383 DEBUG Processing 606/653 atomic regions from SNP 181799 to 182399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,385 DEBUG Processing 796/909 atomic regions from SNP 238714 to 239314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,544 DEBUG Processing 826/865 atomic regions from SNP 247755 to 248355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,583 DEBUG Processing 683/1140 atomic regions from SNP 204658 to 205258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,649 DEBUG Processing 727/1032 atomic regions from SNP 217923 to 218523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,654 DEBUG Processing 797/909 atomic regions from SNP 239014 to 239614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,669 DEBUG Processing 607/653 atomic regions from SNP 182099 to 182699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,832 DEBUG Processing 827/865 atomic regions from SNP 248055 to 248655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,896 DEBUG Processing 684/1140 atomic regions from SNP 204958 to 205558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,931 DEBUG Processing 798/909 atomic regions from SNP 239314 to 239914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,939 DEBUG Processing 728/1032 atomic regions from SNP 218223 to 218823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,960 DEBUG Processing 608/653 atomic regions from SNP 182399 to 182999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,122 DEBUG Processing 828/865 atomic regions from SNP 248355 to 248955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,185 DEBUG Processing 685/1140 atomic regions from SNP 205258 to 205858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,204 DEBUG Processing 799/909 atomic regions from SNP 239614 to 240214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,213 DEBUG Processing 729/1032 atomic regions from SNP 218523 to 219123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,241 DEBUG Processing 609/653 atomic regions from SNP 182699 to 183299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,383 DEBUG Processing 829/865 atomic regions from SNP 248655 to 249255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,472 DEBUG Processing 800/909 atomic regions from SNP 239914 to 240514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,487 DEBUG Processing 730/1032 atomic regions from SNP 218823 to 219423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,492 DEBUG Processing 686/1140 atomic regions from SNP 205558 to 206158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,513 DEBUG Processing 610/653 atomic regions from SNP 182999 to 183599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,645 DEBUG Processing 830/865 atomic regions from SNP 248955 to 249555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,741 DEBUG Processing 801/909 atomic regions from SNP 240214 to 240814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,776 DEBUG Processing 731/1032 atomic regions from SNP 219123 to 219723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,791 DEBUG Processing 611/653 atomic regions from SNP 183299 to 183899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,799 DEBUG Processing 687/1140 atomic regions from SNP 205858 to 206458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,903 DEBUG Processing 831/865 atomic regions from SNP 249255 to 249855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,015 DEBUG Processing 802/909 atomic regions from SNP 240514 to 241114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,054 DEBUG Processing 732/1032 atomic regions from SNP 219423 to 220023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,080 DEBUG Processing 612/653 atomic regions from SNP 183599 to 184199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,113 DEBUG Processing 688/1140 atomic regions from SNP 206158 to 206758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,160 DEBUG Processing 832/865 atomic regions from SNP 249555 to 250155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,279 DEBUG Processing 803/909 atomic regions from SNP 240814 to 241414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,331 DEBUG Processing 733/1032 atomic regions from SNP 219723 to 220323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,360 DEBUG Processing 613/653 atomic regions from SNP 183899 to 184499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,405 DEBUG Processing 689/1140 atomic regions from SNP 206458 to 207058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,416 DEBUG Processing 833/865 atomic regions from SNP 249855 to 250455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,546 DEBUG Processing 804/909 atomic regions from SNP 241114 to 241714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,608 DEBUG Processing 734/1032 atomic regions from SNP 220023 to 220623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,641 DEBUG Processing 614/653 atomic regions from SNP 184199 to 184799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,680 DEBUG Processing 834/865 atomic regions from SNP 250155 to 250755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,690 DEBUG Processing 690/1140 atomic regions from SNP 206758 to 207358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,806 DEBUG Processing 805/909 atomic regions from SNP 241414 to 242014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,883 DEBUG Processing 735/1032 atomic regions from SNP 220323 to 220923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,922 DEBUG Processing 615/653 atomic regions from SNP 184499 to 185099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,948 DEBUG Processing 835/865 atomic regions from SNP 250455 to 251055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,967 DEBUG Processing 691/1140 atomic regions from SNP 207058 to 207658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,064 DEBUG Processing 806/909 atomic regions from SNP 241714 to 242314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,160 DEBUG Processing 736/1032 atomic regions from SNP 220623 to 221223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,205 DEBUG Processing 616/653 atomic regions from SNP 184799 to 185399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,227 DEBUG Processing 836/865 atomic regions from SNP 250755 to 251355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,246 DEBUG Processing 692/1140 atomic regions from SNP 207358 to 207958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,331 DEBUG Processing 807/909 atomic regions from SNP 242014 to 242614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,450 DEBUG Processing 737/1032 atomic regions from SNP 220923 to 221523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,533 DEBUG Processing 617/653 atomic regions from SNP 185099 to 185699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,543 DEBUG Processing 837/865 atomic regions from SNP 251055 to 251655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,586 DEBUG Processing 693/1140 atomic regions from SNP 207658 to 208258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,695 DEBUG Processing 808/909 atomic regions from SNP 242314 to 242914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,848 DEBUG Processing 738/1032 atomic regions from SNP 221223 to 221823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,955 DEBUG Processing 618/653 atomic regions from SNP 185399 to 185999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,983 DEBUG Processing 838/865 atomic regions from SNP 251355 to 251955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,086 DEBUG Processing 694/1140 atomic regions from SNP 207958 to 208558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,110 DEBUG Processing 809/909 atomic regions from SNP 242614 to 243214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,215 DEBUG Processing 739/1032 atomic regions from SNP 221523 to 222123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,260 DEBUG Processing 619/653 atomic regions from SNP 185699 to 186299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,274 DEBUG Processing 839/865 atomic regions from SNP 251655 to 252255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,442 DEBUG Processing 695/1140 atomic regions from SNP 208258 to 208858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,443 DEBUG Processing 810/909 atomic regions from SNP 242914 to 243514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,590 DEBUG Processing 620/653 atomic regions from SNP 185999 to 186599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,596 DEBUG Processing 740/1032 atomic regions from SNP 221823 to 222423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,627 DEBUG Processing 840/865 atomic regions from SNP 251955 to 252555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,741 DEBUG Processing 811/909 atomic regions from SNP 243214 to 243814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,758 DEBUG Processing 696/1140 atomic regions from SNP 208558 to 209158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,870 DEBUG Processing 621/653 atomic regions from SNP 186299 to 186899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,886 DEBUG Processing 841/865 atomic regions from SNP 252255 to 252855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,907 DEBUG Processing 741/1032 atomic regions from SNP 222123 to 222723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,002 DEBUG Processing 812/909 atomic regions from SNP 243514 to 244114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,051 DEBUG Processing 697/1140 atomic regions from SNP 208858 to 209458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,159 DEBUG Processing 622/653 atomic regions from SNP 186599 to 187199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,181 DEBUG Processing 842/865 atomic regions from SNP 252555 to 253155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,221 DEBUG Processing 742/1032 atomic regions from SNP 222423 to 223023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,265 DEBUG Processing 813/909 atomic regions from SNP 243814 to 244414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,339 DEBUG Processing 698/1140 atomic regions from SNP 209158 to 209758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,412 DEBUG Processing 623/653 atomic regions from SNP 186899 to 187499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,448 DEBUG Processing 843/865 atomic regions from SNP 252855 to 253455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,513 DEBUG Processing 743/1032 atomic regions from SNP 222723 to 223323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,526 DEBUG Processing 814/909 atomic regions from SNP 244114 to 244714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,625 DEBUG Processing 699/1140 atomic regions from SNP 209458 to 210058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,667 DEBUG Processing 624/653 atomic regions from SNP 187199 to 187799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,719 DEBUG Processing 844/865 atomic regions from SNP 253155 to 253755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,805 DEBUG Processing 815/909 atomic regions from SNP 244414 to 245014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,812 DEBUG Processing 744/1032 atomic regions from SNP 223023 to 223623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,910 DEBUG Processing 700/1140 atomic regions from SNP 209758 to 210358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,914 DEBUG Processing 625/653 atomic regions from SNP 187499 to 188099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,989 DEBUG Processing 845/865 atomic regions from SNP 253455 to 254055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,085 DEBUG Processing 816/909 atomic regions from SNP 244714 to 245314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,101 DEBUG Processing 745/1032 atomic regions from SNP 223323 to 223923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,172 DEBUG Processing 626/653 atomic regions from SNP 187799 to 188399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,195 DEBUG Processing 701/1140 atomic regions from SNP 210058 to 210658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,276 DEBUG Processing 846/865 atomic regions from SNP 253755 to 254355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,365 DEBUG Processing 817/909 atomic regions from SNP 245014 to 245614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,405 DEBUG Processing 746/1032 atomic regions from SNP 223623 to 224223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,449 DEBUG Processing 627/653 atomic regions from SNP 188099 to 188699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,466 DEBUG Processing 702/1140 atomic regions from SNP 210358 to 210958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,549 DEBUG Processing 847/865 atomic regions from SNP 254055 to 254655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,638 DEBUG Processing 818/909 atomic regions from SNP 245314 to 245914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,682 DEBUG Processing 747/1032 atomic regions from SNP 223923 to 224523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,735 DEBUG Processing 628/653 atomic regions from SNP 188399 to 188999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,741 DEBUG Processing 703/1140 atomic regions from SNP 210658 to 211258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,824 DEBUG Processing 848/865 atomic regions from SNP 254355 to 254955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,909 DEBUG Processing 819/909 atomic regions from SNP 245614 to 246214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,959 DEBUG Processing 748/1032 atomic regions from SNP 224223 to 224823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,024 DEBUG Processing 704/1140 atomic regions from SNP 210958 to 211558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,027 DEBUG Processing 629/653 atomic regions from SNP 188699 to 189299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,105 DEBUG Processing 849/865 atomic regions from SNP 254655 to 255255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,181 DEBUG Processing 820/909 atomic regions from SNP 245914 to 246514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,232 DEBUG Processing 749/1032 atomic regions from SNP 224523 to 225123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,304 DEBUG Processing 705/1140 atomic regions from SNP 211258 to 211858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,307 DEBUG Processing 630/653 atomic regions from SNP 188999 to 189599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,375 DEBUG Processing 850/865 atomic regions from SNP 254955 to 255555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,440 DEBUG Processing 821/909 atomic regions from SNP 246214 to 246814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,501 DEBUG Processing 750/1032 atomic regions from SNP 224823 to 225423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,558 DEBUG Processing 631/653 atomic regions from SNP 189299 to 189899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,581 DEBUG Processing 706/1140 atomic regions from SNP 211558 to 212158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,644 DEBUG Processing 851/865 atomic regions from SNP 255255 to 255855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,693 DEBUG Processing 822/909 atomic regions from SNP 246514 to 247114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,784 DEBUG Processing 751/1032 atomic regions from SNP 225123 to 225723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,804 DEBUG Processing 632/653 atomic regions from SNP 189599 to 190199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,859 DEBUG Processing 707/1140 atomic regions from SNP 211858 to 212458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,910 DEBUG Processing 852/865 atomic regions from SNP 255555 to 256155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,951 DEBUG Processing 823/909 atomic regions from SNP 246814 to 247414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,053 DEBUG Processing 633/653 atomic regions from SNP 189899 to 190499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,067 DEBUG Processing 752/1032 atomic regions from SNP 225423 to 226023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,142 DEBUG Processing 708/1140 atomic regions from SNP 212158 to 212758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,160 DEBUG Processing 853/865 atomic regions from SNP 255855 to 256455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,206 DEBUG Processing 824/909 atomic regions from SNP 247114 to 247714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,304 DEBUG Processing 634/653 atomic regions from SNP 190199 to 190799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,360 DEBUG Processing 753/1032 atomic regions from SNP 225723 to 226323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,438 DEBUG Processing 709/1140 atomic regions from SNP 212458 to 213058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,441 DEBUG Processing 854/865 atomic regions from SNP 256155 to 256755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,464 DEBUG Processing 825/909 atomic regions from SNP 247414 to 248014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,552 DEBUG Processing 635/653 atomic regions from SNP 190499 to 191099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,633 DEBUG Processing 754/1032 atomic regions from SNP 226023 to 226623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,701 DEBUG Processing 855/865 atomic regions from SNP 256455 to 257055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,716 DEBUG Processing 710/1140 atomic regions from SNP 212758 to 213358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,722 DEBUG Processing 826/909 atomic regions from SNP 247714 to 248314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,800 DEBUG Processing 636/653 atomic regions from SNP 190799 to 191399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,904 DEBUG Processing 755/1032 atomic regions from SNP 226323 to 226923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,962 DEBUG Processing 856/865 atomic regions from SNP 256755 to 257355 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,989 DEBUG Processing 827/909 atomic regions from SNP 248014 to 248614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,995 DEBUG Processing 711/1140 atomic regions from SNP 213058 to 213658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,064 DEBUG Processing 637/653 atomic regions from SNP 191099 to 191699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,172 DEBUG Processing 756/1032 atomic regions from SNP 226623 to 227223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,216 DEBUG Processing 857/865 atomic regions from SNP 257055 to 257655 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,255 DEBUG Processing 828/909 atomic regions from SNP 248314 to 248914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,283 DEBUG Processing 712/1140 atomic regions from SNP 213358 to 213958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,316 DEBUG Processing 638/653 atomic regions from SNP 191399 to 191999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,433 DEBUG Processing 757/1032 atomic regions from SNP 226923 to 227523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,473 DEBUG Processing 858/865 atomic regions from SNP 257355 to 257955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,523 DEBUG Processing 829/909 atomic regions from SNP 248614 to 249214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,563 DEBUG Processing 713/1140 atomic regions from SNP 213658 to 214258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,570 DEBUG Processing 639/653 atomic regions from SNP 191699 to 192299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,694 DEBUG Processing 758/1032 atomic regions from SNP 227223 to 227823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,717 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:46:23,725 DEBUG Processing 859/865 atomic regions from SNP 257655 to 258255 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,796 DEBUG Processing 830/909 atomic regions from SNP 248914 to 249514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,847 DEBUG Processing 714/1140 atomic regions from SNP 213958 to 214558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,857 DEBUG Processing 640/653 atomic regions from SNP 191999 to 192599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,980 DEBUG Processing 759/1032 atomic regions from SNP 227523 to 228123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,988 DEBUG Processing 860/865 atomic regions from SNP 257955 to 258555 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,068 DEBUG Processing 831/909 atomic regions from SNP 249214 to 249814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,127 DEBUG Processing 715/1140 atomic regions from SNP 214258 to 214858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,148 DEBUG Processing 641/653 atomic regions from SNP 192299 to 192899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,244 DEBUG Processing 861/865 atomic regions from SNP 258255 to 258855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,285 DEBUG Processing 760/1032 atomic regions from SNP 227823 to 228423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,325 DEBUG Processing 832/909 atomic regions from SNP 249514 to 250114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,401 DEBUG Processing 716/1140 atomic regions from SNP 214558 to 215158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,425 DEBUG Processing 642/653 atomic regions from SNP 192599 to 193199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,507 DEBUG Processing 862/865 atomic regions from SNP 258555 to 259155 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,577 DEBUG Processing 833/909 atomic regions from SNP 249814 to 250414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,580 DEBUG Processing 761/1032 atomic regions from SNP 228123 to 228723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,677 DEBUG Processing 717/1140 atomic regions from SNP 214858 to 215458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,690 DEBUG Processing 643/653 atomic regions from SNP 192899 to 193499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,762 DEBUG Processing 863/865 atomic regions from SNP 258855 to 259455 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,833 DEBUG Processing 834/909 atomic regions from SNP 250114 to 250714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,878 DEBUG Processing 762/1032 atomic regions from SNP 228423 to 229023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,956 DEBUG Processing 718/1140 atomic regions from SNP 215158 to 215758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,956 DEBUG Processing 644/653 atomic regions from SNP 193199 to 193799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,014 DEBUG Processing 864/865 atomic regions from SNP 259155 to 259755 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,089 DEBUG Processing 835/909 atomic regions from SNP 250414 to 251014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,162 DEBUG Processing 763/1032 atomic regions from SNP 228723 to 229323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,216 DEBUG Processing 645/653 atomic regions from SNP 193499 to 194099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,252 DEBUG Processing 719/1140 atomic regions from SNP 215458 to 216058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,261 DEBUG Processing 865/865 atomic regions from SNP 259455 to 260055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,351 DEBUG Processing 836/909 atomic regions from SNP 250714 to 251314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,392 DEBUG Unique SNPs positions in subchromosome 1: 260056 2025-01-31 09:46:25,460 DEBUG Processing 764/1032 atomic regions from SNP 229023 to 229623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,484 DEBUG Processing 646/653 atomic regions from SNP 193799 to 194399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,537 DEBUG Processing 720/1140 atomic regions from SNP 215758 to 216358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,613 DEBUG Processing 837/909 atomic regions from SNP 251014 to 251614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,758 DEBUG Processing 647/653 atomic regions from SNP 194099 to 194699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,766 DEBUG Processing 765/1032 atomic regions from SNP 229323 to 229923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,811 DEBUG Processing 721/1140 atomic regions from SNP 216058 to 216658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,869 DEBUG Processing 838/909 atomic regions from SNP 251314 to 251914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,034 DEBUG Processing 648/653 atomic regions from SNP 194399 to 194999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,057 DEBUG Processing 766/1032 atomic regions from SNP 229623 to 230223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,091 DEBUG Processing 722/1140 atomic regions from SNP 216358 to 216958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,126 DEBUG Processing 839/909 atomic regions from SNP 251614 to 252214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,307 DEBUG Processing 649/653 atomic regions from SNP 194699 to 195299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,356 DEBUG Processing 767/1032 atomic regions from SNP 229923 to 230523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,374 DEBUG Processing 723/1140 atomic regions from SNP 216658 to 217258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,393 DEBUG Processing 840/909 atomic regions from SNP 251914 to 252514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,570 DEBUG Processing 650/653 atomic regions from SNP 194999 to 195599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,634 DEBUG Processing 768/1032 atomic regions from SNP 230223 to 230823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,658 DEBUG Processing 841/909 atomic regions from SNP 252214 to 252814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,658 DEBUG Processing 724/1140 atomic regions from SNP 216958 to 217558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,841 DEBUG Processing 651/653 atomic regions from SNP 195299 to 195899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,941 DEBUG Processing 769/1032 atomic regions from SNP 230523 to 231123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,945 DEBUG Processing 842/909 atomic regions from SNP 252514 to 253114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,973 DEBUG Processing 725/1140 atomic regions from SNP 217258 to 217858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,169 DEBUG Processing 652/653 atomic regions from SNP 195599 to 196199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,283 DEBUG Processing 843/909 atomic regions from SNP 252814 to 253414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,319 DEBUG Processing 770/1032 atomic regions from SNP 230823 to 231423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,356 DEBUG Processing 726/1140 atomic regions from SNP 217558 to 218158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,578 DEBUG Processing 653/653 atomic regions from SNP 195899 to 196499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,728 DEBUG Processing 844/909 atomic regions from SNP 253114 to 253714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,805 DEBUG Processing 771/1032 atomic regions from SNP 231123 to 231723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,810 DEBUG Processing 727/1140 atomic regions from SNP 217858 to 218458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,910 DEBUG Unique SNPs positions in subchromosome 2: 196500 2025-01-31 09:46:28,180 DEBUG Processing 845/909 atomic regions from SNP 253414 to 254014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,289 DEBUG Processing 772/1032 atomic regions from SNP 231423 to 232023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,298 DEBUG Processing 728/1140 atomic regions from SNP 218158 to 218758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,484 DEBUG Processing 846/909 atomic regions from SNP 253714 to 254314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,602 DEBUG Processing 773/1032 atomic regions from SNP 231723 to 232323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,620 DEBUG Processing 729/1140 atomic regions from SNP 218458 to 219058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,785 DEBUG Processing 847/909 atomic regions from SNP 254014 to 254614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,995 DEBUG Processing 774/1032 atomic regions from SNP 232023 to 232623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,057 DEBUG Processing 730/1140 atomic regions from SNP 218758 to 219358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,121 DEBUG Processing 848/909 atomic regions from SNP 254314 to 254914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,316 DEBUG Processing 775/1032 atomic regions from SNP 232323 to 232923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,379 DEBUG Processing 731/1140 atomic regions from SNP 219058 to 219658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,399 DEBUG Processing 849/909 atomic regions from SNP 254614 to 255214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,628 DEBUG Processing 776/1032 atomic regions from SNP 232623 to 233223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,714 DEBUG Processing 850/909 atomic regions from SNP 254914 to 255514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,718 DEBUG Processing 732/1140 atomic regions from SNP 219358 to 219958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,949 DEBUG Processing 777/1032 atomic regions from SNP 232923 to 233523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,019 DEBUG Processing 851/909 atomic regions from SNP 255214 to 255814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,077 DEBUG Processing 733/1140 atomic regions from SNP 219658 to 220258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,287 DEBUG Processing 778/1032 atomic regions from SNP 233223 to 233823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,335 DEBUG Processing 852/909 atomic regions from SNP 255514 to 256114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,436 DEBUG Processing 734/1140 atomic regions from SNP 219958 to 220558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,662 DEBUG Processing 779/1032 atomic regions from SNP 233523 to 234123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,766 DEBUG Processing 853/909 atomic regions from SNP 255814 to 256414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,869 DEBUG Processing 735/1140 atomic regions from SNP 220258 to 220858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,036 DEBUG Processing 780/1032 atomic regions from SNP 233823 to 234423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,085 DEBUG Processing 854/909 atomic regions from SNP 256114 to 256714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,210 DEBUG Processing 736/1140 atomic regions from SNP 220558 to 221158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,367 DEBUG Processing 781/1032 atomic regions from SNP 234123 to 234723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,390 DEBUG Processing 855/909 atomic regions from SNP 256414 to 257014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,603 DEBUG Processing 737/1140 atomic regions from SNP 220858 to 221458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,723 DEBUG Processing 782/1032 atomic regions from SNP 234423 to 235023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,733 DEBUG Processing 856/909 atomic regions from SNP 256714 to 257314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,903 DEBUG Processing 738/1140 atomic regions from SNP 221158 to 221758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,997 DEBUG Processing 783/1032 atomic regions from SNP 234723 to 235323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,999 DEBUG Processing 857/909 atomic regions from SNP 257014 to 257614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,183 DEBUG Processing 739/1140 atomic regions from SNP 221458 to 222058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,264 DEBUG Processing 784/1032 atomic regions from SNP 235023 to 235623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,265 DEBUG Processing 858/909 atomic regions from SNP 257314 to 257914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,457 DEBUG Processing 740/1140 atomic regions from SNP 221758 to 222358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,541 DEBUG Processing 859/909 atomic regions from SNP 257614 to 258214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,550 DEBUG Processing 785/1032 atomic regions from SNP 235323 to 235923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,726 DEBUG Processing 741/1140 atomic regions from SNP 222058 to 222658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,816 DEBUG Processing 860/909 atomic regions from SNP 257914 to 258514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,828 DEBUG Processing 786/1032 atomic regions from SNP 235623 to 236223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,993 DEBUG Processing 742/1140 atomic regions from SNP 222358 to 222958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,089 DEBUG Processing 861/909 atomic regions from SNP 258214 to 258814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,112 DEBUG Processing 787/1032 atomic regions from SNP 235923 to 236523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,260 DEBUG Processing 743/1140 atomic regions from SNP 222658 to 223258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,360 DEBUG Processing 862/909 atomic regions from SNP 258514 to 259114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,395 DEBUG Processing 788/1032 atomic regions from SNP 236223 to 236823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,534 DEBUG Processing 744/1140 atomic regions from SNP 222958 to 223558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,619 DEBUG Processing 863/909 atomic regions from SNP 258814 to 259414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,671 DEBUG Processing 789/1032 atomic regions from SNP 236523 to 237123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,807 DEBUG Processing 745/1140 atomic regions from SNP 223258 to 223858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,875 DEBUG Processing 864/909 atomic regions from SNP 259114 to 259714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,941 DEBUG Processing 790/1032 atomic regions from SNP 236823 to 237423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,080 DEBUG Processing 746/1140 atomic regions from SNP 223558 to 224158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,126 DEBUG Processing 865/909 atomic regions from SNP 259414 to 260014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,212 DEBUG Processing 791/1032 atomic regions from SNP 237123 to 237723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,354 DEBUG Processing 747/1140 atomic regions from SNP 223858 to 224458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,383 DEBUG Processing 866/909 atomic regions from SNP 259714 to 260314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,475 DEBUG Processing 792/1032 atomic regions from SNP 237423 to 238023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,626 DEBUG Processing 748/1140 atomic regions from SNP 224158 to 224758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,631 DEBUG Processing 867/909 atomic regions from SNP 260014 to 260614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,743 DEBUG Processing 793/1032 atomic regions from SNP 237723 to 238323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,887 DEBUG Processing 868/909 atomic regions from SNP 260314 to 260914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,903 DEBUG Processing 749/1140 atomic regions from SNP 224458 to 225058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,010 DEBUG Processing 794/1032 atomic regions from SNP 238023 to 238623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,136 DEBUG Processing 869/909 atomic regions from SNP 260614 to 261214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,178 DEBUG Processing 750/1140 atomic regions from SNP 224758 to 225358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,284 DEBUG Processing 795/1032 atomic regions from SNP 238323 to 238923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,386 DEBUG Processing 870/909 atomic regions from SNP 260914 to 261514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,472 DEBUG Processing 751/1140 atomic regions from SNP 225058 to 225658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,559 DEBUG Processing 796/1032 atomic regions from SNP 238623 to 239223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,630 DEBUG Processing 871/909 atomic regions from SNP 261214 to 261814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,767 DEBUG Processing 752/1140 atomic regions from SNP 225358 to 225958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,832 DEBUG Processing 797/1032 atomic regions from SNP 238923 to 239523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,872 DEBUG Processing 872/909 atomic regions from SNP 261514 to 262114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,077 DEBUG Processing 753/1140 atomic regions from SNP 225658 to 226258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,100 DEBUG Processing 798/1032 atomic regions from SNP 239223 to 239823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,118 DEBUG Processing 873/909 atomic regions from SNP 261814 to 262414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,380 DEBUG Processing 799/1032 atomic regions from SNP 239523 to 240123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,381 DEBUG Processing 874/909 atomic regions from SNP 262114 to 262714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,399 DEBUG Processing 754/1140 atomic regions from SNP 225958 to 226558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,636 DEBUG Processing 875/909 atomic regions from SNP 262414 to 263014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,656 DEBUG Processing 800/1032 atomic regions from SNP 239823 to 240423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,705 DEBUG Processing 755/1140 atomic regions from SNP 226258 to 226858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,897 DEBUG Processing 876/909 atomic regions from SNP 262714 to 263314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,935 DEBUG Processing 801/1032 atomic regions from SNP 240123 to 240723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,014 DEBUG Processing 756/1140 atomic regions from SNP 226558 to 227158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,155 DEBUG Processing 877/909 atomic regions from SNP 263014 to 263614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,213 DEBUG Processing 802/1032 atomic regions from SNP 240423 to 241023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,317 DEBUG Processing 757/1140 atomic regions from SNP 226858 to 227458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,402 DEBUG Processing 878/909 atomic regions from SNP 263314 to 263914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,492 DEBUG Processing 803/1032 atomic regions from SNP 240723 to 241323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,620 DEBUG Processing 758/1140 atomic regions from SNP 227158 to 227758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,649 DEBUG Processing 879/909 atomic regions from SNP 263614 to 264214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,767 DEBUG Processing 804/1032 atomic regions from SNP 241023 to 241623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,899 DEBUG Processing 880/909 atomic regions from SNP 263914 to 264514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,928 DEBUG Processing 759/1140 atomic regions from SNP 227458 to 228058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,031 DEBUG Processing 805/1032 atomic regions from SNP 241323 to 241923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,145 DEBUG Processing 881/909 atomic regions from SNP 264214 to 264814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,237 DEBUG Processing 760/1140 atomic regions from SNP 227758 to 228358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,297 DEBUG Processing 806/1032 atomic regions from SNP 241623 to 242223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,395 DEBUG Processing 882/909 atomic regions from SNP 264514 to 265114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,550 DEBUG Processing 761/1140 atomic regions from SNP 228058 to 228658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,568 DEBUG Processing 807/1032 atomic regions from SNP 241923 to 242523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,646 DEBUG Processing 883/909 atomic regions from SNP 264814 to 265414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,839 DEBUG Processing 808/1032 atomic regions from SNP 242223 to 242823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,865 DEBUG Processing 762/1140 atomic regions from SNP 228358 to 228958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,897 DEBUG Processing 884/909 atomic regions from SNP 265114 to 265714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,104 DEBUG Processing 809/1032 atomic regions from SNP 242523 to 243123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,151 DEBUG Processing 885/909 atomic regions from SNP 265414 to 266014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,174 DEBUG Processing 763/1140 atomic regions from SNP 228658 to 229258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,368 DEBUG Processing 810/1032 atomic regions from SNP 242823 to 243423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,415 DEBUG Processing 886/909 atomic regions from SNP 265714 to 266314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,483 DEBUG Processing 764/1140 atomic regions from SNP 228958 to 229558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,640 DEBUG Processing 811/1032 atomic regions from SNP 243123 to 243723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,686 DEBUG Processing 887/909 atomic regions from SNP 266014 to 266614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,801 DEBUG Processing 765/1140 atomic regions from SNP 229258 to 229858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,918 DEBUG Processing 812/1032 atomic regions from SNP 243423 to 244023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,957 DEBUG Processing 888/909 atomic regions from SNP 266314 to 266914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,130 DEBUG Processing 766/1140 atomic regions from SNP 229558 to 230158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,200 DEBUG Processing 813/1032 atomic regions from SNP 243723 to 244323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,236 DEBUG Processing 889/909 atomic regions from SNP 266614 to 267214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,459 DEBUG Processing 767/1140 atomic regions from SNP 229858 to 230458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,488 DEBUG Processing 814/1032 atomic regions from SNP 244023 to 244623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,499 DEBUG Processing 890/909 atomic regions from SNP 266914 to 267514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,765 DEBUG Processing 891/909 atomic regions from SNP 267214 to 267814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,770 DEBUG Processing 815/1032 atomic regions from SNP 244323 to 244923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,771 DEBUG Processing 768/1140 atomic regions from SNP 230158 to 230758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,039 DEBUG Processing 892/909 atomic regions from SNP 267514 to 268114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,068 DEBUG Processing 816/1032 atomic regions from SNP 244623 to 245223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,097 DEBUG Processing 769/1140 atomic regions from SNP 230458 to 231058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,136 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:46:41,138 DEBUG chr6: Signal quantile: 0.995. signal threshold: 11. Best RMSEA: 0.024 2025-01-31 09:46:41,322 DEBUG Processing 893/909 atomic regions from SNP 267814 to 268414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,365 DEBUG Processing 817/1032 atomic regions from SNP 244923 to 245523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,425 DEBUG Processing 770/1140 atomic regions from SNP 230758 to 231358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,600 DEBUG Processing 894/909 atomic regions from SNP 268114 to 268714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,645 DEBUG Processing 818/1032 atomic regions from SNP 245223 to 245823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,756 DEBUG Processing 771/1140 atomic regions from SNP 231058 to 231658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,778 DEBUG Subchromosome time: 216.9242338789627, subchromosome SNPs: 196500 2025-01-31 09:46:41,779 DEBUG Estimated BADs: [1.53, 0.51, 1.53, 0.51, 3.07, 3.07, 1.53, 0.38, 1.53, 0.38, 0.77, 1.53, 0.38, 0.77, 1.53, 3.07, 0.77, 0.17, 1.53, 3.07, 1.53, 3.07] SNP counts: [22642, 27636, 4485, 8834, 3070, 9133, 3664, 3852, 19258, 27384, 9047, 7226, 3886, 15647, 10200, 7213, 2707, 3270, 3000, 47110, 7785, 16118] SNP IDs counts: [22642, 27636, 4485, 8834, 3070, 9133, 3664, 3852, 19258, 27384, 9047, 7226, 3886, 15647, 10200, 7213, 2707, 3270, 3000, 47110, 7785, 16118] Critical gap: 682689bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 16.31Mbp, 32.47Mbp, 34.92Mbp, 40.12Mbp, 41.86Mbp[0.87Mbp], 47.65Mbp, 49.69Mbp, 51.97Mbp, 64.27Mbp, 80.49Mbp, 85.57Mbp, 89.68Mbp, 92.04Mbp, 100.88Mbp, 106.45Mbp, 110.33Mbp, 111.91Mbp, 114.03Mbp, 115.82Mbp, 141.64Mbp, 147.87Mbp, 156.51Mbp] 2025-01-31 09:46:41,779 DEBUG chr4 time: 216.92522873799317 s 2025-01-31 09:46:41,877 DEBUG Processing 895/909 atomic regions from SNP 268414 to 269014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,926 DEBUG Processing 819/1032 atomic regions from SNP 245523 to 246123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,934 DEBUG chr4: Fitting background model for 22 segments 2025-01-31 09:46:42,084 DEBUG Processing 772/1140 atomic regions from SNP 231358 to 231958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,159 DEBUG Processing 896/909 atomic regions from SNP 268714 to 269314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,203 DEBUG Processing 820/1032 atomic regions from SNP 245823 to 246423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,410 DEBUG Processing 773/1140 atomic regions from SNP 231658 to 232258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,429 DEBUG Processing 897/909 atomic regions from SNP 269014 to 269614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,475 DEBUG Processing 821/1032 atomic regions from SNP 246123 to 246723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,700 DEBUG Processing 898/909 atomic regions from SNP 269314 to 269914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,732 DEBUG Processing 774/1140 atomic regions from SNP 231958 to 232558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,753 DEBUG Processing 822/1032 atomic regions from SNP 246423 to 247023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,983 DEBUG Processing 899/909 atomic regions from SNP 269614 to 270214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,029 DEBUG Processing 823/1032 atomic regions from SNP 246723 to 247323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,048 DEBUG Processing 775/1140 atomic regions from SNP 232258 to 232858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,261 DEBUG Processing 900/909 atomic regions from SNP 269914 to 270514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,312 DEBUG Processing 824/1032 atomic regions from SNP 247023 to 247623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,371 DEBUG Processing 776/1140 atomic regions from SNP 232558 to 233158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,531 DEBUG Processing 901/909 atomic regions from SNP 270214 to 270814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,585 DEBUG Processing 825/1032 atomic regions from SNP 247323 to 247923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,682 DEBUG Processing 777/1140 atomic regions from SNP 232858 to 233458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,802 DEBUG Processing 902/909 atomic regions from SNP 270514 to 271114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,858 DEBUG Processing 826/1032 atomic regions from SNP 247623 to 248223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,984 DEBUG Processing 778/1140 atomic regions from SNP 233158 to 233758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,075 DEBUG Processing 903/909 atomic regions from SNP 270814 to 271414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,130 DEBUG chr6 total SNP count: 259068 2025-01-31 09:46:44,130 DEBUG chr6 length: 149736546 2025-01-31 09:46:44,130 DEBUG ----------------------------------------- 2025-01-31 09:46:44,130 INFO Processing SNPs in chr6 2025-01-31 09:46:44,131 DEBUG Processing 827/1032 atomic regions from SNP 247923 to 248523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,293 DEBUG Processing 779/1140 atomic regions from SNP 233458 to 234058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,336 DEBUG Processing 904/909 atomic regions from SNP 271114 to 271714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,398 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 259068)] 2025-01-31 09:46:44,399 DEBUG Processing 828/1032 atomic regions from SNP 248223 to 248823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,581 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:44,590 DEBUG Processing 905/909 atomic regions from SNP 271414 to 272014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,599 DEBUG Processing 780/1140 atomic regions from SNP 233758 to 234358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,663 DEBUG Processing 829/1032 atomic regions from SNP 248523 to 249123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,840 DEBUG Processing 906/909 atomic regions from SNP 271714 to 272314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,891 DEBUG Processing 781/1140 atomic regions from SNP 234058 to 234658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,931 DEBUG Processing 830/1032 atomic regions from SNP 248823 to 249423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,084 DEBUG Processing 907/909 atomic regions from SNP 272014 to 272614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,191 DEBUG Processing 782/1140 atomic regions from SNP 234358 to 234958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,206 DEBUG Processing 831/1032 atomic regions from SNP 249123 to 249723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,332 DEBUG Processing 908/909 atomic regions from SNP 272314 to 272914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,487 DEBUG Processing 832/1032 atomic regions from SNP 249423 to 250023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,519 DEBUG Processing 783/1140 atomic regions from SNP 234658 to 235258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,586 DEBUG Processing 909/909 atomic regions from SNP 272614 to 273214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,730 DEBUG Unique SNPs positions in subchromosome 1: 273215 2025-01-31 09:46:45,762 DEBUG Processing 833/1032 atomic regions from SNP 249723 to 250323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,845 DEBUG Processing 784/1140 atomic regions from SNP 234958 to 235558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,040 DEBUG Processing 834/1032 atomic regions from SNP 250023 to 250623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,162 DEBUG Processing 785/1140 atomic regions from SNP 235258 to 235858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,307 DEBUG Processing 835/1032 atomic regions from SNP 250323 to 250923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,472 DEBUG Processing 786/1140 atomic regions from SNP 235558 to 236158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,569 DEBUG Processing 836/1032 atomic regions from SNP 250623 to 251223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,775 DEBUG Processing 787/1140 atomic regions from SNP 235858 to 236458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,845 DEBUG Processing 837/1032 atomic regions from SNP 250923 to 251523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,071 DEBUG Processing 788/1140 atomic regions from SNP 236158 to 236758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,117 DEBUG Processing 838/1032 atomic regions from SNP 251223 to 251823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,371 DEBUG Processing 789/1140 atomic regions from SNP 236458 to 237058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,391 DEBUG Processing 839/1032 atomic regions from SNP 251523 to 252123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,657 DEBUG Processing 790/1140 atomic regions from SNP 236758 to 237358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,668 DEBUG Processing 840/1032 atomic regions from SNP 251823 to 252423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,954 DEBUG Processing 841/1032 atomic regions from SNP 252123 to 252723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,956 DEBUG Processing 791/1140 atomic regions from SNP 237058 to 237658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,244 DEBUG Processing 792/1140 atomic regions from SNP 237358 to 237958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,248 DEBUG Processing 842/1032 atomic regions from SNP 252423 to 253023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,531 DEBUG Processing 793/1140 atomic regions from SNP 237658 to 238258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,546 DEBUG Processing 843/1032 atomic regions from SNP 252723 to 253323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,813 DEBUG Processing 794/1140 atomic regions from SNP 237958 to 238558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,825 DEBUG Processing 844/1032 atomic regions from SNP 253023 to 253623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,102 DEBUG Processing 795/1140 atomic regions from SNP 238258 to 238858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,105 DEBUG Processing 845/1032 atomic regions from SNP 253323 to 253923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,389 DEBUG Processing 846/1032 atomic regions from SNP 253623 to 254223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,394 DEBUG Processing 796/1140 atomic regions from SNP 238558 to 239158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,668 DEBUG Processing 847/1032 atomic regions from SNP 253923 to 254523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,685 DEBUG Processing 797/1140 atomic regions from SNP 238858 to 239458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,938 DEBUG Processing 848/1032 atomic regions from SNP 254223 to 254823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,963 DEBUG Processing 798/1140 atomic regions from SNP 239158 to 239758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,168 DEBUG Subchromosome time: 287.2666692479979, subchromosome SNPs: 260056 2025-01-31 09:46:50,169 DEBUG Estimated BADs: [1.47, 0.49, 1.47, 4.41, 1.47, 2.94, 0.74, 1.47, 0.29, 1.47, 0.37, 1.47, 0.37, 1.47, 2.94, 4.41, 1.47, 4.41, 1.47, 2.94, 1.47] SNP counts: [4943, 23110, 6185, 1375, 9342, 16547, 20450, 6432, 15151, 9015, 5405, 11677, 17430, 35943, 6482, 3464, 8703, 9899, 16308, 20003, 12192] SNP IDs counts: [4943, 23110, 6185, 1375, 9342, 16547, 20450, 6432, 15151, 9015, 5405, 11677, 17430, 35943, 6482, 3464, 8703, 9899, 16308, 20003, 12192] Critical gap: 670047bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.88Mbp, 20.87Mbp, 24.32Mbp, 25.04Mbp, 30.42Mbp, 39.29Mbp, 50.94Mbp, 54.38Mbp, 63.38Mbp, 68.27Mbp, 71.48Mbp, 77.81Mbp, 88.04Mbp, 110.34Mbp, 113.73Mbp, 115.55Mbp, 120.09Mbp, 125.37Mbp, 134.17Mbp, 144.96Mbp, 151.83Mbp] 2025-01-31 09:46:50,169 DEBUG chr5 time: 287.2672499649925 s 2025-01-31 09:46:50,203 DEBUG Processing 849/1032 atomic regions from SNP 254523 to 255123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,244 DEBUG Processing 799/1140 atomic regions from SNP 239458 to 240058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,323 DEBUG chr5: Fitting background model for 21 segments 2025-01-31 09:46:50,480 DEBUG Processing 850/1032 atomic regions from SNP 254823 to 255423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,536 DEBUG Processing 800/1140 atomic regions from SNP 239758 to 240358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,755 DEBUG Processing 851/1032 atomic regions from SNP 255123 to 255723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,823 DEBUG Processing 801/1140 atomic regions from SNP 240058 to 240658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,027 DEBUG Processing 852/1032 atomic regions from SNP 255423 to 256023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,110 DEBUG Processing 802/1140 atomic regions from SNP 240358 to 240958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,295 DEBUG Processing 853/1032 atomic regions from SNP 255723 to 256323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,395 DEBUG Processing 803/1140 atomic regions from SNP 240658 to 241258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,570 DEBUG Processing 854/1032 atomic regions from SNP 256023 to 256623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,673 DEBUG Processing 804/1140 atomic regions from SNP 240958 to 241558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,841 DEBUG Processing 855/1032 atomic regions from SNP 256323 to 256923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,950 DEBUG Processing 805/1140 atomic regions from SNP 241258 to 241858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,113 DEBUG Processing 856/1032 atomic regions from SNP 256623 to 257223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,238 DEBUG Processing 806/1140 atomic regions from SNP 241558 to 242158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,390 DEBUG Processing 857/1032 atomic regions from SNP 256923 to 257523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,530 DEBUG Processing 807/1140 atomic regions from SNP 241858 to 242458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,675 DEBUG Processing 858/1032 atomic regions from SNP 257223 to 257823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,822 DEBUG Processing 808/1140 atomic regions from SNP 242158 to 242758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,957 DEBUG Processing 859/1032 atomic regions from SNP 257523 to 258123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,113 DEBUG Processing 809/1140 atomic regions from SNP 242458 to 243058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,230 DEBUG Processing 860/1032 atomic regions from SNP 257823 to 258423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,394 DEBUG Processing 810/1140 atomic regions from SNP 242758 to 243358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,491 DEBUG Processing 861/1032 atomic regions from SNP 258123 to 258723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,679 DEBUG Processing 811/1140 atomic regions from SNP 243058 to 243658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,758 DEBUG Processing 862/1032 atomic regions from SNP 258423 to 259023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,967 DEBUG Processing 812/1140 atomic regions from SNP 243358 to 243958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,029 DEBUG Processing 863/1032 atomic regions from SNP 258723 to 259323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,254 DEBUG Processing 813/1140 atomic regions from SNP 243658 to 244258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,310 DEBUG Processing 864/1032 atomic regions from SNP 259023 to 259623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,549 DEBUG Processing 814/1140 atomic regions from SNP 243958 to 244558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,590 DEBUG Processing 865/1032 atomic regions from SNP 259323 to 259923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,837 DEBUG Processing 815/1140 atomic regions from SNP 244258 to 244858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,859 DEBUG Processing 866/1032 atomic regions from SNP 259623 to 260223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,122 DEBUG Processing 816/1140 atomic regions from SNP 244558 to 245158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,127 DEBUG Processing 867/1032 atomic regions from SNP 259923 to 260523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,401 DEBUG Processing 868/1032 atomic regions from SNP 260223 to 260823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,409 DEBUG Processing 817/1140 atomic regions from SNP 244858 to 245458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,678 DEBUG Processing 869/1032 atomic regions from SNP 260523 to 261123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,699 DEBUG Processing 818/1140 atomic regions from SNP 245158 to 245758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,951 DEBUG Processing 870/1032 atomic regions from SNP 260823 to 261423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,982 DEBUG Processing 819/1140 atomic regions from SNP 245458 to 246058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,219 DEBUG Processing 871/1032 atomic regions from SNP 261123 to 261723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,265 DEBUG Processing 820/1140 atomic regions from SNP 245758 to 246358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,491 DEBUG Processing 872/1032 atomic regions from SNP 261423 to 262023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,558 DEBUG Processing 821/1140 atomic regions from SNP 246058 to 246658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,767 DEBUG Processing 873/1032 atomic regions from SNP 261723 to 262323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,845 DEBUG Processing 822/1140 atomic regions from SNP 246358 to 246958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,044 DEBUG Processing 874/1032 atomic regions from SNP 262023 to 262623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,123 DEBUG Processing 823/1140 atomic regions from SNP 246658 to 247258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,313 DEBUG Processing 875/1032 atomic regions from SNP 262323 to 262923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,406 DEBUG Processing 824/1140 atomic regions from SNP 246958 to 247558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,578 DEBUG Processing 876/1032 atomic regions from SNP 262623 to 263223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,697 DEBUG Processing 825/1140 atomic regions from SNP 247258 to 247858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,851 DEBUG Processing 877/1032 atomic regions from SNP 262923 to 263523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,997 DEBUG Processing 826/1140 atomic regions from SNP 247558 to 248158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,124 DEBUG Processing 878/1032 atomic regions from SNP 263223 to 263823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,284 DEBUG Processing 827/1140 atomic regions from SNP 247858 to 248458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,389 DEBUG Processing 879/1032 atomic regions from SNP 263523 to 264123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,578 DEBUG Processing 828/1140 atomic regions from SNP 248158 to 248758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,664 DEBUG Processing 880/1032 atomic regions from SNP 263823 to 264423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,871 DEBUG Processing 829/1140 atomic regions from SNP 248458 to 249058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,942 DEBUG Processing 881/1032 atomic regions from SNP 264123 to 264723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,161 DEBUG Processing 830/1140 atomic regions from SNP 248758 to 249358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,225 DEBUG Processing 882/1032 atomic regions from SNP 264423 to 265023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,457 DEBUG Processing 831/1140 atomic regions from SNP 249058 to 249658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,510 DEBUG Processing 883/1032 atomic regions from SNP 264723 to 265323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,764 DEBUG Processing 832/1140 atomic regions from SNP 249358 to 249958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,810 DEBUG Processing 884/1032 atomic regions from SNP 265023 to 265623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,053 DEBUG Processing 833/1140 atomic regions from SNP 249658 to 250258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,089 DEBUG Processing 885/1032 atomic regions from SNP 265323 to 265923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,344 DEBUG Processing 834/1140 atomic regions from SNP 249958 to 250558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,368 DEBUG Processing 886/1032 atomic regions from SNP 265623 to 266223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,641 DEBUG Processing 835/1140 atomic regions from SNP 250258 to 250858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,654 DEBUG Processing 887/1032 atomic regions from SNP 265923 to 266523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,943 DEBUG Processing 836/1140 atomic regions from SNP 250558 to 251158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,945 DEBUG Processing 888/1032 atomic regions from SNP 266223 to 266823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,238 DEBUG Processing 889/1032 atomic regions from SNP 266523 to 267123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,243 DEBUG Processing 837/1140 atomic regions from SNP 250858 to 251458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,542 DEBUG Processing 838/1140 atomic regions from SNP 251158 to 251758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,550 DEBUG Processing 890/1032 atomic regions from SNP 266823 to 267423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,836 DEBUG Processing 839/1140 atomic regions from SNP 251458 to 252058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,855 DEBUG Processing 891/1032 atomic regions from SNP 267123 to 267723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,122 DEBUG Processing 840/1140 atomic regions from SNP 251758 to 252358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,165 DEBUG Processing 892/1032 atomic regions from SNP 267423 to 268023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,417 DEBUG Processing 841/1140 atomic regions from SNP 252058 to 252658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,465 DEBUG Processing 893/1032 atomic regions from SNP 267723 to 268323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,715 DEBUG Processing 842/1140 atomic regions from SNP 252358 to 252958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,776 DEBUG Processing 894/1032 atomic regions from SNP 268023 to 268623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,001 DEBUG Processing 843/1140 atomic regions from SNP 252658 to 253258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,073 DEBUG Processing 895/1032 atomic regions from SNP 268323 to 268923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,281 DEBUG Processing 844/1140 atomic regions from SNP 252958 to 253558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,367 DEBUG Processing 896/1032 atomic regions from SNP 268623 to 269223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,569 DEBUG Processing 845/1140 atomic regions from SNP 253258 to 253858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,645 DEBUG Processing 897/1032 atomic regions from SNP 268923 to 269523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,860 DEBUG Processing 846/1140 atomic regions from SNP 253558 to 254158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,947 DEBUG Processing 898/1032 atomic regions from SNP 269223 to 269823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,147 DEBUG Processing 847/1140 atomic regions from SNP 253858 to 254458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,266 DEBUG Processing 899/1032 atomic regions from SNP 269523 to 270123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,438 DEBUG Processing 848/1140 atomic regions from SNP 254158 to 254758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,568 DEBUG Processing 900/1032 atomic regions from SNP 269823 to 270423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,729 DEBUG Processing 849/1140 atomic regions from SNP 254458 to 255058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,857 DEBUG Processing 901/1032 atomic regions from SNP 270123 to 270723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,020 DEBUG Processing 850/1140 atomic regions from SNP 254758 to 255358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,124 DEBUG Processing 902/1032 atomic regions from SNP 270423 to 271023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,316 DEBUG Processing 851/1140 atomic regions from SNP 255058 to 255658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,387 DEBUG Processing 903/1032 atomic regions from SNP 270723 to 271323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,601 DEBUG Processing 852/1140 atomic regions from SNP 255358 to 255958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,664 DEBUG Processing 904/1032 atomic regions from SNP 271023 to 271623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,886 DEBUG Processing 853/1140 atomic regions from SNP 255658 to 256258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,961 DEBUG Processing 905/1032 atomic regions from SNP 271323 to 271923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,171 DEBUG Processing 854/1140 atomic regions from SNP 255958 to 256558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,261 DEBUG Processing 906/1032 atomic regions from SNP 271623 to 272223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,458 DEBUG Processing 855/1140 atomic regions from SNP 256258 to 256858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,558 DEBUG Processing 907/1032 atomic regions from SNP 271923 to 272523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,746 DEBUG Processing 856/1140 atomic regions from SNP 256558 to 257158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,827 DEBUG Processing 908/1032 atomic regions from SNP 272223 to 272823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,031 DEBUG Processing 857/1140 atomic regions from SNP 256858 to 257458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,098 DEBUG Processing 909/1032 atomic regions from SNP 272523 to 273123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,309 DEBUG Processing 858/1140 atomic regions from SNP 257158 to 257758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,368 DEBUG Processing 910/1032 atomic regions from SNP 272823 to 273423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,596 DEBUG Processing 859/1140 atomic regions from SNP 257458 to 258058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,646 DEBUG Processing 911/1032 atomic regions from SNP 273123 to 273723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,882 DEBUG Processing 860/1140 atomic regions from SNP 257758 to 258358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,943 DEBUG Processing 912/1032 atomic regions from SNP 273423 to 274023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,165 DEBUG Processing 861/1140 atomic regions from SNP 258058 to 258658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,240 DEBUG Processing 913/1032 atomic regions from SNP 273723 to 274323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,449 DEBUG Processing 862/1140 atomic regions from SNP 258358 to 258958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,533 DEBUG Processing 914/1032 atomic regions from SNP 274023 to 274623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,734 DEBUG Processing 863/1140 atomic regions from SNP 258658 to 259258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,830 DEBUG Processing 915/1032 atomic regions from SNP 274323 to 274923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,019 DEBUG Processing 864/1140 atomic regions from SNP 258958 to 259558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,130 DEBUG Processing 916/1032 atomic regions from SNP 274623 to 275223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,302 DEBUG Subchromosome time: 304.64439142891206, subchromosome SNPs: 273215 2025-01-31 09:47:09,302 DEBUG Estimated BADs: [0.51, 3.07, 0.77, 3.07, 0.77, 1.53, 0.77, 0.19, 3.07, 0.77, 1.53, 0.51, 3.07, 0.77, 3.07, 7.67, 1.53, 7.67, 3.07, 4.60, 1.53, 3.07, 1.53, 3.07, 1.53, 0.19, 0.77, 0.26, 0.77, 0.38] SNP counts: [9194, 2944, 14365, 1633, 11977, 12334, 15054, 10195, 5718, 22802, 10189, 14136, 859, 6979, 7443, 5095, 5869, 4326, 6301, 15598, 21466, 3734, 7313, 6420, 15138, 4434, 9332, 8027, 5755, 8585] SNP IDs counts: [9194, 2944, 14365, 1633, 11977, 12334, 15054, 10195, 5718, 22802, 10189, 14136, 859, 6979, 7443, 5095, 5869, 4326, 6301, 15598, 21466, 3734, 7313, 6420, 15138, 4434, 9332, 8027, 5755, 8585] Critical gap: 689824bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.53Mbp, 10.17Mbp, 19.04Mbp, 19.96Mbp, 27.06Mbp, 33.95Mbp, 42.52Mbp, 48.99Mbp, 52.19Mbp, 65.32Mbp, 71.03Mbp, 79.32Mbp, 79.79Mbp, 83.72Mbp, 87.69Mbp, 90.42Mbp, 94.33Mbp, 96.73Mbp, 100.39Mbp, 108.77Mbp, 121.16Mbp, 123.11Mbp, 127.19Mbp, 130.66Mbp, 139.15Mbp, 141.97Mbp, 147.08Mbp, 151.69Mbp, 154.82Mbp, 160.04Mbp] 2025-01-31 09:47:09,302 DEBUG chr3 time: 304.6449269609293 s 2025-01-31 09:47:09,305 DEBUG Processing 865/1140 atomic regions from SNP 259258 to 259858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,358 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:47:09,415 DEBUG Processing 917/1032 atomic regions from SNP 274923 to 275523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,464 DEBUG chr3: Fitting background model for 30 segments 2025-01-31 09:47:09,594 DEBUG Processing 866/1140 atomic regions from SNP 259558 to 260158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,707 DEBUG Processing 918/1032 atomic regions from SNP 275223 to 275823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,877 DEBUG Processing 867/1140 atomic regions from SNP 259858 to 260458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,012 DEBUG Processing 919/1032 atomic regions from SNP 275523 to 276123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,165 DEBUG Processing 868/1140 atomic regions from SNP 260158 to 260758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,310 DEBUG Processing 920/1032 atomic regions from SNP 275823 to 276423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,458 DEBUG Processing 869/1140 atomic regions from SNP 260458 to 261058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,604 DEBUG Processing 921/1032 atomic regions from SNP 276123 to 276723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,744 DEBUG Processing 870/1140 atomic regions from SNP 260758 to 261358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,896 DEBUG Processing 922/1032 atomic regions from SNP 276423 to 277023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,047 DEBUG Processing 871/1140 atomic regions from SNP 261058 to 261658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,205 DEBUG Processing 923/1032 atomic regions from SNP 276723 to 277323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,359 DEBUG Processing 872/1140 atomic regions from SNP 261358 to 261958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,524 DEBUG Processing 924/1032 atomic regions from SNP 277023 to 277623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,660 DEBUG Processing 873/1140 atomic regions from SNP 261658 to 262258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,820 DEBUG Processing 925/1032 atomic regions from SNP 277323 to 277923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,956 DEBUG Processing 874/1140 atomic regions from SNP 261958 to 262558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,121 DEBUG Processing 926/1032 atomic regions from SNP 277623 to 278223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,253 DEBUG Processing 875/1140 atomic regions from SNP 262258 to 262858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,415 DEBUG Processing 927/1032 atomic regions from SNP 277923 to 278523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,542 DEBUG Processing 876/1140 atomic regions from SNP 262558 to 263158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,703 DEBUG Processing 928/1032 atomic regions from SNP 278223 to 278823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,827 DEBUG Processing 877/1140 atomic regions from SNP 262858 to 263458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,996 DEBUG Processing 929/1032 atomic regions from SNP 278523 to 279123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,106 DEBUG Processing 878/1140 atomic regions from SNP 263158 to 263758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,281 DEBUG Processing 930/1032 atomic regions from SNP 278823 to 279423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,387 DEBUG Processing 879/1140 atomic regions from SNP 263458 to 264058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,576 DEBUG Processing 931/1032 atomic regions from SNP 279123 to 279723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,685 DEBUG Processing 880/1140 atomic regions from SNP 263758 to 264358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,873 DEBUG Processing 932/1032 atomic regions from SNP 279423 to 280023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,978 DEBUG Processing 881/1140 atomic regions from SNP 264058 to 264658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,153 DEBUG Processing 933/1032 atomic regions from SNP 279723 to 280323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,274 DEBUG Processing 882/1140 atomic regions from SNP 264358 to 264958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,431 DEBUG Processing 934/1032 atomic regions from SNP 280023 to 280623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,560 DEBUG Processing 883/1140 atomic regions from SNP 264658 to 265258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,712 DEBUG Processing 935/1032 atomic regions from SNP 280323 to 280923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,851 DEBUG Processing 884/1140 atomic regions from SNP 264958 to 265558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,988 DEBUG Processing 936/1032 atomic regions from SNP 280623 to 281223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,150 DEBUG Processing 885/1140 atomic regions from SNP 265258 to 265858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,255 DEBUG Processing 937/1032 atomic regions from SNP 280923 to 281523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,436 DEBUG Processing 886/1140 atomic regions from SNP 265558 to 266158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,522 DEBUG Processing 938/1032 atomic regions from SNP 281223 to 281823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,625 DEBUG Segmenting atomic regions: 2025-01-31 09:47:15,716 DEBUG Processing 887/1140 atomic regions from SNP 265858 to 266458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,740 DEBUG Processing 1/862 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,795 DEBUG Processing 939/1032 atomic regions from SNP 281523 to 282123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,994 DEBUG Processing 2/862 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,005 DEBUG Processing 888/1140 atomic regions from SNP 266158 to 266758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,076 DEBUG Processing 940/1032 atomic regions from SNP 281823 to 282423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,257 DEBUG Processing 3/862 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,310 DEBUG Processing 889/1140 atomic regions from SNP 266458 to 267058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,355 DEBUG Processing 941/1032 atomic regions from SNP 282123 to 282723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,522 DEBUG Processing 4/862 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,602 DEBUG Processing 890/1140 atomic regions from SNP 266758 to 267358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,634 DEBUG Processing 942/1032 atomic regions from SNP 282423 to 283023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,788 DEBUG Processing 5/862 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,890 DEBUG Processing 891/1140 atomic regions from SNP 267058 to 267658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,917 DEBUG Processing 943/1032 atomic regions from SNP 282723 to 283323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,053 DEBUG Processing 6/862 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,176 DEBUG Processing 892/1140 atomic regions from SNP 267358 to 267958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,208 DEBUG Processing 944/1032 atomic regions from SNP 283023 to 283623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,324 DEBUG Processing 7/862 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,458 DEBUG Processing 893/1140 atomic regions from SNP 267658 to 268258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,494 DEBUG Processing 945/1032 atomic regions from SNP 283323 to 283923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,581 DEBUG Processing 8/862 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,750 DEBUG Processing 894/1140 atomic regions from SNP 267958 to 268558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,779 DEBUG Processing 946/1032 atomic regions from SNP 283623 to 284223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,829 DEBUG Processing 9/862 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,061 DEBUG Processing 947/1032 atomic regions from SNP 283923 to 284523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,063 DEBUG Processing 895/1140 atomic regions from SNP 268258 to 268858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,085 DEBUG Processing 10/862 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,338 DEBUG Processing 948/1032 atomic regions from SNP 284223 to 284823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,348 DEBUG Processing 11/862 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,387 DEBUG Processing 896/1140 atomic regions from SNP 268558 to 269158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,615 DEBUG Processing 12/862 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,619 DEBUG Processing 949/1032 atomic regions from SNP 284523 to 285123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,712 DEBUG Processing 897/1140 atomic regions from SNP 268858 to 269458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,896 DEBUG Processing 13/862 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,906 DEBUG Processing 950/1032 atomic regions from SNP 284823 to 285423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,015 DEBUG Processing 898/1140 atomic regions from SNP 269158 to 269758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,171 DEBUG Processing 14/862 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,177 DEBUG Processing 951/1032 atomic regions from SNP 285123 to 285723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,327 DEBUG Processing 899/1140 atomic regions from SNP 269458 to 270058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,420 DEBUG Processing 15/862 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,446 DEBUG Processing 952/1032 atomic regions from SNP 285423 to 286023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,634 DEBUG Processing 900/1140 atomic regions from SNP 269758 to 270358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,671 DEBUG Processing 16/862 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,721 DEBUG Processing 953/1032 atomic regions from SNP 285723 to 286323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,927 DEBUG Processing 17/862 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,936 DEBUG Processing 901/1140 atomic regions from SNP 270058 to 270658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,003 DEBUG Processing 954/1032 atomic regions from SNP 286023 to 286623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,196 DEBUG Processing 18/862 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,258 DEBUG Processing 902/1140 atomic regions from SNP 270358 to 270958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,283 DEBUG Processing 955/1032 atomic regions from SNP 286323 to 286923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,466 DEBUG Processing 19/862 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,562 DEBUG Processing 956/1032 atomic regions from SNP 286623 to 287223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,573 DEBUG Processing 903/1140 atomic regions from SNP 270658 to 271258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,721 DEBUG Processing 20/862 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,849 DEBUG Processing 957/1032 atomic regions from SNP 286923 to 287523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,886 DEBUG Processing 904/1140 atomic regions from SNP 270958 to 271558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,972 DEBUG Processing 21/862 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,147 DEBUG Processing 958/1032 atomic regions from SNP 287223 to 287823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,200 DEBUG Processing 905/1140 atomic regions from SNP 271258 to 271858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,218 DEBUG Processing 22/862 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,433 DEBUG Processing 959/1032 atomic regions from SNP 287523 to 288123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,464 DEBUG Processing 23/862 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,518 DEBUG Processing 906/1140 atomic regions from SNP 271558 to 272158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,722 DEBUG Processing 24/862 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,727 DEBUG Processing 960/1032 atomic regions from SNP 287823 to 288423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,830 DEBUG Processing 907/1140 atomic regions from SNP 271858 to 272458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,971 DEBUG Processing 25/862 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,029 DEBUG Processing 961/1032 atomic regions from SNP 288123 to 288723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,146 DEBUG Processing 908/1140 atomic regions from SNP 272158 to 272758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,214 DEBUG Processing 26/862 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,327 DEBUG Processing 962/1032 atomic regions from SNP 288423 to 289023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,437 DEBUG Processing 909/1140 atomic regions from SNP 272458 to 273058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,454 DEBUG Processing 27/862 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,624 DEBUG Processing 963/1032 atomic regions from SNP 288723 to 289323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,709 DEBUG Processing 28/862 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,725 DEBUG Processing 910/1140 atomic regions from SNP 272758 to 273358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,922 DEBUG Processing 964/1032 atomic regions from SNP 289023 to 289623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,967 DEBUG Processing 29/862 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,032 DEBUG Processing 911/1140 atomic regions from SNP 273058 to 273658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,180 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:47:23,216 DEBUG Processing 965/1032 atomic regions from SNP 289323 to 289923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,229 DEBUG Processing 30/862 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,334 DEBUG Processing 912/1140 atomic regions from SNP 273358 to 273958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,493 DEBUG Processing 31/862 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,500 DEBUG Processing 966/1032 atomic regions from SNP 289623 to 290223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,625 DEBUG Processing 913/1140 atomic regions from SNP 273658 to 274258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,761 DEBUG Processing 32/862 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,788 DEBUG Processing 967/1032 atomic regions from SNP 289923 to 290523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,928 DEBUG Processing 914/1140 atomic regions from SNP 273958 to 274558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,029 DEBUG Processing 33/862 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,070 DEBUG Processing 968/1032 atomic regions from SNP 290223 to 290823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,228 DEBUG Processing 915/1140 atomic regions from SNP 274258 to 274858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,296 DEBUG Processing 34/862 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,380 DEBUG Processing 969/1032 atomic regions from SNP 290523 to 291123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,522 DEBUG Processing 916/1140 atomic regions from SNP 274558 to 275158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,564 DEBUG Processing 35/862 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,686 DEBUG Processing 970/1032 atomic regions from SNP 290823 to 291423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,817 DEBUG Processing 917/1140 atomic regions from SNP 274858 to 275458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,829 DEBUG Processing 36/862 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,978 DEBUG Processing 971/1032 atomic regions from SNP 291123 to 291723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,093 DEBUG Processing 37/862 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,109 DEBUG Processing 918/1140 atomic regions from SNP 275158 to 275758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,276 DEBUG Processing 972/1032 atomic regions from SNP 291423 to 292023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,359 DEBUG Processing 38/862 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,401 DEBUG Processing 919/1140 atomic regions from SNP 275458 to 276058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,571 DEBUG Processing 973/1032 atomic regions from SNP 291723 to 292323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,624 DEBUG Processing 39/862 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,692 DEBUG Processing 920/1140 atomic regions from SNP 275758 to 276358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,853 DEBUG Processing 974/1032 atomic regions from SNP 292023 to 292623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,888 DEBUG Processing 40/862 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,987 DEBUG Processing 921/1140 atomic regions from SNP 276058 to 276658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,136 DEBUG Processing 975/1032 atomic regions from SNP 292323 to 292923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,158 DEBUG Processing 41/862 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,286 DEBUG Processing 922/1140 atomic regions from SNP 276358 to 276958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,428 DEBUG Processing 42/862 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,438 DEBUG Processing 976/1032 atomic regions from SNP 292623 to 293223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,583 DEBUG Processing 923/1140 atomic regions from SNP 276658 to 277258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,633 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:47:26,635 DEBUG chr7: Signal quantile: 0.992. signal threshold: 14. Best RMSEA: 0.016 2025-01-31 09:47:26,694 DEBUG Processing 43/862 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,746 DEBUG Processing 977/1032 atomic regions from SNP 292923 to 293523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,878 DEBUG Processing 924/1140 atomic regions from SNP 276958 to 277558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,962 DEBUG Processing 44/862 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,045 DEBUG Processing 978/1032 atomic regions from SNP 293223 to 293823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,167 DEBUG Processing 925/1140 atomic regions from SNP 277258 to 277858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,231 DEBUG Processing 45/862 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,343 DEBUG Processing 979/1032 atomic regions from SNP 293523 to 294123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,463 DEBUG Processing 926/1140 atomic regions from SNP 277558 to 278158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,509 DEBUG Processing 46/862 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,640 DEBUG Processing 980/1032 atomic regions from SNP 293823 to 294423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,776 DEBUG Processing 927/1140 atomic regions from SNP 277858 to 278458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,779 DEBUG Processing 47/862 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,932 DEBUG Processing 981/1032 atomic regions from SNP 294123 to 294723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,044 DEBUG Processing 48/862 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,088 DEBUG Processing 928/1140 atomic regions from SNP 278158 to 278758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,239 DEBUG Processing 982/1032 atomic regions from SNP 294423 to 295023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,315 DEBUG Processing 49/862 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,401 DEBUG Processing 929/1140 atomic regions from SNP 278458 to 279058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,535 DEBUG Processing 983/1032 atomic regions from SNP 294723 to 295323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,588 DEBUG Processing 50/862 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,704 DEBUG Processing 930/1140 atomic regions from SNP 278758 to 279358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,840 DEBUG Processing 984/1032 atomic regions from SNP 295023 to 295623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,865 DEBUG Processing 51/862 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,022 DEBUG Processing 931/1140 atomic regions from SNP 279058 to 279658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,130 DEBUG Processing 52/862 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,146 DEBUG Processing 985/1032 atomic regions from SNP 295323 to 295923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,332 DEBUG Processing 932/1140 atomic regions from SNP 279358 to 279958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,396 DEBUG Processing 53/862 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,459 DEBUG Processing 986/1032 atomic regions from SNP 295623 to 296223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,643 DEBUG Processing 933/1140 atomic regions from SNP 279658 to 280258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,663 DEBUG Processing 54/862 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,672 DEBUG chr7 total SNP count: 234797 2025-01-31 09:47:29,672 DEBUG chr7 length: 145441459 2025-01-31 09:47:29,672 DEBUG ----------------------------------------- 2025-01-31 09:47:29,672 INFO Processing SNPs in chr7 2025-01-31 09:47:29,786 DEBUG Processing 987/1032 atomic regions from SNP 295923 to 296523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,924 DEBUG Processing 55/862 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,956 DEBUG Processing 934/1140 atomic regions from SNP 279958 to 280558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,044 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 21285), (21285, 21331), (21331, 234797)] 2025-01-31 09:47:30,108 DEBUG Processing 988/1032 atomic regions from SNP 296223 to 296823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,153 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:30,179 DEBUG Processing 56/862 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,256 DEBUG Processing 935/1140 atomic regions from SNP 280258 to 280858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,414 DEBUG Processing 989/1032 atomic regions from SNP 296523 to 297123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,435 DEBUG Processing 57/862 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,544 DEBUG Processing 936/1140 atomic regions from SNP 280558 to 281158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,692 DEBUG Processing 58/862 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,720 DEBUG Processing 990/1032 atomic regions from SNP 296823 to 297423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,846 DEBUG Processing 937/1140 atomic regions from SNP 280858 to 281458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,949 DEBUG Processing 59/862 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,023 DEBUG Processing 991/1032 atomic regions from SNP 297123 to 297723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,138 DEBUG Processing 938/1140 atomic regions from SNP 281158 to 281758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,210 DEBUG Processing 60/862 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,306 DEBUG Processing 992/1032 atomic regions from SNP 297423 to 298023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,431 DEBUG Processing 939/1140 atomic regions from SNP 281458 to 282058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,468 DEBUG Processing 61/862 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,582 DEBUG Processing 993/1032 atomic regions from SNP 297723 to 298323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,717 DEBUG Processing 940/1140 atomic regions from SNP 281758 to 282358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,725 DEBUG Processing 62/862 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,857 DEBUG Processing 994/1032 atomic regions from SNP 298023 to 298623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,980 DEBUG Processing 63/862 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,012 DEBUG Processing 941/1140 atomic regions from SNP 282058 to 282658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,141 DEBUG Processing 995/1032 atomic regions from SNP 298323 to 298923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,234 DEBUG Processing 64/862 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,336 DEBUG Processing 942/1140 atomic regions from SNP 282358 to 282958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,414 DEBUG Processing 996/1032 atomic regions from SNP 298623 to 299223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,488 DEBUG Processing 65/862 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,643 DEBUG Processing 943/1140 atomic regions from SNP 282658 to 283258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,683 DEBUG Processing 997/1032 atomic regions from SNP 298923 to 299523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,732 DEBUG Segmenting atomic regions: 2025-01-31 09:47:32,745 DEBUG Processing 66/862 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,837 DEBUG Processing 1/69 atomic regions from SNP 0 to 605 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:32,927 DEBUG Processing 944/1140 atomic regions from SNP 282958 to 283558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,954 DEBUG Processing 998/1032 atomic regions from SNP 299223 to 299823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,000 DEBUG Processing 67/862 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,088 DEBUG Processing 2/69 atomic regions from SNP 305 to 910 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:33,209 DEBUG Processing 945/1140 atomic regions from SNP 283258 to 283858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,223 DEBUG Processing 999/1032 atomic regions from SNP 299523 to 300123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,253 DEBUG Processing 68/862 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,340 DEBUG Processing 3/69 atomic regions from SNP 610 to 1215 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:33,497 DEBUG Processing 946/1140 atomic regions from SNP 283558 to 284158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,502 DEBUG Processing 69/862 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,502 DEBUG Processing 1000/1032 atomic regions from SNP 299823 to 300423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,607 DEBUG Processing 4/69 atomic regions from SNP 915 to 1520 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:33,750 DEBUG Processing 70/862 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,779 DEBUG Processing 1001/1032 atomic regions from SNP 300123 to 300723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,785 DEBUG Processing 947/1140 atomic regions from SNP 283858 to 284458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,860 DEBUG Processing 5/69 atomic regions from SNP 1220 to 1825 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:34,007 DEBUG Processing 71/862 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,053 DEBUG Processing 1002/1032 atomic regions from SNP 300423 to 301023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,065 DEBUG Processing 948/1140 atomic regions from SNP 284158 to 284758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,104 DEBUG Processing 6/69 atomic regions from SNP 1525 to 2130 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:34,259 DEBUG Processing 72/862 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,342 DEBUG Processing 1003/1032 atomic regions from SNP 300723 to 301323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,350 DEBUG Processing 949/1140 atomic regions from SNP 284458 to 285058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,360 DEBUG Processing 7/69 atomic regions from SNP 1830 to 2435 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:34,507 DEBUG Processing 73/862 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,640 DEBUG Processing 8/69 atomic regions from SNP 2135 to 2740 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:34,645 DEBUG Processing 950/1140 atomic regions from SNP 284758 to 285358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,646 DEBUG Processing 1004/1032 atomic regions from SNP 301023 to 301623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,752 DEBUG Processing 74/862 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,921 DEBUG Processing 9/69 atomic regions from SNP 2440 to 3044 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:34,930 DEBUG Processing 1005/1032 atomic regions from SNP 301323 to 301923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,939 DEBUG Processing 951/1140 atomic regions from SNP 285058 to 285658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,003 DEBUG Processing 75/862 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,202 DEBUG Processing 10/69 atomic regions from SNP 2744 to 3348 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:35,205 DEBUG Processing 1006/1032 atomic regions from SNP 301623 to 302223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,236 DEBUG Processing 952/1140 atomic regions from SNP 285358 to 285958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,263 DEBUG Processing 76/862 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,477 DEBUG Processing 1007/1032 atomic regions from SNP 301923 to 302523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,480 DEBUG Processing 11/69 atomic regions from SNP 3048 to 3652 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:35,529 DEBUG Processing 77/862 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,549 DEBUG Processing 953/1140 atomic regions from SNP 285658 to 286258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,727 DEBUG Processing 12/69 atomic regions from SNP 3352 to 3956 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:35,756 DEBUG Processing 1008/1032 atomic regions from SNP 302223 to 302823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,796 DEBUG Processing 78/862 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,847 DEBUG Processing 954/1140 atomic regions from SNP 285958 to 286558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,970 DEBUG Processing 13/69 atomic regions from SNP 3656 to 4260 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:36,028 DEBUG Processing 1009/1032 atomic regions from SNP 302523 to 303123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,056 DEBUG Processing 79/862 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,143 DEBUG Processing 955/1140 atomic regions from SNP 286258 to 286858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,215 DEBUG Processing 14/69 atomic regions from SNP 3960 to 4564 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:36,313 DEBUG Processing 1010/1032 atomic regions from SNP 302823 to 303423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,318 DEBUG Processing 80/862 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,431 DEBUG Processing 956/1140 atomic regions from SNP 286558 to 287158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,456 DEBUG Processing 15/69 atomic regions from SNP 4264 to 4868 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:36,575 DEBUG Processing 81/862 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,592 DEBUG Processing 1011/1032 atomic regions from SNP 303123 to 303723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,704 DEBUG Processing 16/69 atomic regions from SNP 4568 to 5172 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:36,733 DEBUG Processing 957/1140 atomic regions from SNP 286858 to 287458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,830 DEBUG Processing 82/862 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,867 DEBUG Processing 1012/1032 atomic regions from SNP 303423 to 304023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,976 DEBUG Processing 17/69 atomic regions from SNP 4872 to 5476 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:37,051 DEBUG Processing 958/1140 atomic regions from SNP 287158 to 287758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,088 DEBUG Processing 83/862 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,136 DEBUG Processing 1013/1032 atomic regions from SNP 303723 to 304323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,251 DEBUG Processing 18/69 atomic regions from SNP 5176 to 5780 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:37,348 DEBUG Processing 84/862 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,367 DEBUG Processing 959/1140 atomic regions from SNP 287458 to 288058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,410 DEBUG Processing 1014/1032 atomic regions from SNP 304023 to 304623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,501 DEBUG Processing 19/69 atomic regions from SNP 5480 to 6084 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:37,615 DEBUG Processing 85/862 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,689 DEBUG Processing 960/1140 atomic regions from SNP 287758 to 288358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,698 DEBUG Processing 1015/1032 atomic regions from SNP 304323 to 304923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,756 DEBUG Processing 20/69 atomic regions from SNP 5784 to 6388 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:37,875 DEBUG Processing 86/862 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,985 DEBUG Processing 1016/1032 atomic regions from SNP 304623 to 305223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,002 DEBUG Processing 21/69 atomic regions from SNP 6088 to 6692 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:38,013 DEBUG Processing 961/1140 atomic regions from SNP 288058 to 288658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,133 DEBUG Processing 87/862 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,253 DEBUG Processing 22/69 atomic regions from SNP 6392 to 6996 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:38,289 DEBUG Processing 1017/1032 atomic regions from SNP 304923 to 305523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,336 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:47:38,338 DEBUG chr10: Signal quantile: 0.995. signal threshold: 14. Best RMSEA: 0.018 2025-01-31 09:47:38,342 DEBUG Processing 962/1140 atomic regions from SNP 288358 to 288958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,399 DEBUG Processing 88/862 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,497 DEBUG Processing 23/69 atomic regions from SNP 6696 to 7300 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:38,587 DEBUG Processing 1018/1032 atomic regions from SNP 305223 to 305823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,662 DEBUG Processing 89/862 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,667 DEBUG Processing 963/1140 atomic regions from SNP 288658 to 289258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,750 DEBUG Processing 24/69 atomic regions from SNP 7000 to 7604 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:38,865 DEBUG Processing 1019/1032 atomic regions from SNP 305523 to 306123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,922 DEBUG Processing 90/862 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,974 DEBUG Processing 964/1140 atomic regions from SNP 288958 to 289558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,007 DEBUG Processing 25/69 atomic regions from SNP 7304 to 7908 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:39,141 DEBUG Processing 1020/1032 atomic regions from SNP 305823 to 306423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,176 DEBUG Processing 91/862 atomic regions from SNP 27090 to 27691 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,263 DEBUG Processing 26/69 atomic regions from SNP 7608 to 8212 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:39,274 DEBUG Processing 965/1140 atomic regions from SNP 289258 to 289858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,430 DEBUG Processing 92/862 atomic regions from SNP 27391 to 27992 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,444 DEBUG Processing 1021/1032 atomic regions from SNP 306123 to 306723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,516 DEBUG Processing 27/69 atomic regions from SNP 7912 to 8516 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:39,561 DEBUG Processing 966/1140 atomic regions from SNP 289558 to 290158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,685 DEBUG Processing 93/862 atomic regions from SNP 27692 to 28293 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,733 DEBUG Processing 1022/1032 atomic regions from SNP 306423 to 307023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,773 DEBUG Processing 28/69 atomic regions from SNP 8216 to 8820 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:39,854 DEBUG Processing 967/1140 atomic regions from SNP 289858 to 290458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,940 DEBUG Processing 94/862 atomic regions from SNP 27993 to 28594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,010 DEBUG Processing 1023/1032 atomic regions from SNP 306723 to 307323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,036 DEBUG Processing 29/69 atomic regions from SNP 8520 to 9124 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:40,145 DEBUG Processing 968/1140 atomic regions from SNP 290158 to 290758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,193 DEBUG Processing 95/862 atomic regions from SNP 28294 to 28895 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,284 DEBUG Processing 1024/1032 atomic regions from SNP 307023 to 307623 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,301 DEBUG Processing 30/69 atomic regions from SNP 8824 to 9428 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:40,432 DEBUG Processing 969/1140 atomic regions from SNP 290458 to 291058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,440 DEBUG Processing 96/862 atomic regions from SNP 28595 to 29196 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,556 DEBUG Processing 31/69 atomic regions from SNP 9128 to 9732 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:40,566 DEBUG Processing 1025/1032 atomic regions from SNP 307323 to 307923 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,699 DEBUG Processing 97/862 atomic regions from SNP 28896 to 29497 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,746 DEBUG Processing 970/1140 atomic regions from SNP 290758 to 291358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,806 DEBUG Processing 32/69 atomic regions from SNP 9432 to 10036 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:40,846 DEBUG Processing 1026/1032 atomic regions from SNP 307623 to 308223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,965 DEBUG Processing 98/862 atomic regions from SNP 29197 to 29798 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,035 DEBUG chr10 total SNP count: 226810 2025-01-31 09:47:41,036 DEBUG chr10 length: 130694993 2025-01-31 09:47:41,036 DEBUG ----------------------------------------- 2025-01-31 09:47:41,036 INFO Processing SNPs in chr10 2025-01-31 09:47:41,061 DEBUG Processing 33/69 atomic regions from SNP 9736 to 10340 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:41,067 DEBUG Processing 971/1140 atomic regions from SNP 291058 to 291658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,127 DEBUG Processing 1027/1032 atomic regions from SNP 307923 to 308523 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,226 DEBUG Processing 99/862 atomic regions from SNP 29498 to 30099 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,268 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 226810)] 2025-01-31 09:47:41,312 DEBUG Processing 34/69 atomic regions from SNP 10040 to 10644 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:41,364 DEBUG Processing 972/1140 atomic regions from SNP 291358 to 291958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,412 DEBUG Processing 1028/1032 atomic regions from SNP 308223 to 308823 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,429 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:41,481 DEBUG Processing 100/862 atomic regions from SNP 29799 to 30400 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,565 DEBUG Processing 35/69 atomic regions from SNP 10344 to 10948 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:41,661 DEBUG Processing 973/1140 atomic regions from SNP 291658 to 292258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,702 DEBUG Processing 1029/1032 atomic regions from SNP 308523 to 309123 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,735 DEBUG Processing 101/862 atomic regions from SNP 30100 to 30701 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,814 DEBUG Processing 36/69 atomic regions from SNP 10648 to 11252 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:41,961 DEBUG Processing 974/1140 atomic regions from SNP 291958 to 292558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,985 DEBUG Processing 102/862 atomic regions from SNP 30401 to 31002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,996 DEBUG Processing 1030/1032 atomic regions from SNP 308823 to 309423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,071 DEBUG Processing 37/69 atomic regions from SNP 10952 to 11556 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:42,245 DEBUG Processing 103/862 atomic regions from SNP 30702 to 31303 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,246 DEBUG Processing 975/1140 atomic regions from SNP 292258 to 292858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,279 DEBUG Processing 1031/1032 atomic regions from SNP 309123 to 309723 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,314 DEBUG Processing 38/69 atomic regions from SNP 11256 to 11860 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:42,510 DEBUG Processing 104/862 atomic regions from SNP 31003 to 31604 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,543 DEBUG Processing 976/1140 atomic regions from SNP 292558 to 293158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,565 DEBUG Processing 1032/1032 atomic regions from SNP 309423 to 310023 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,569 DEBUG Processing 39/69 atomic regions from SNP 11560 to 12164 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:42,714 DEBUG Unique SNPs positions in subchromosome 1: 310024 2025-01-31 09:47:42,769 DEBUG Processing 105/862 atomic regions from SNP 31304 to 31905 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,830 DEBUG Processing 40/69 atomic regions from SNP 11864 to 12468 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:42,860 DEBUG Processing 977/1140 atomic regions from SNP 292858 to 293458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,017 DEBUG Processing 106/862 atomic regions from SNP 31605 to 32206 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,090 DEBUG Processing 41/69 atomic regions from SNP 12168 to 12772 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:43,163 DEBUG Processing 978/1140 atomic regions from SNP 293158 to 293758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,257 DEBUG Processing 107/862 atomic regions from SNP 31906 to 32507 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,344 DEBUG Processing 42/69 atomic regions from SNP 12472 to 13076 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:43,453 DEBUG Processing 979/1140 atomic regions from SNP 293458 to 294058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,504 DEBUG Processing 108/862 atomic regions from SNP 32207 to 32808 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,591 DEBUG Processing 43/69 atomic regions from SNP 12776 to 13380 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:43,731 DEBUG Processing 980/1140 atomic regions from SNP 293758 to 294358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,762 DEBUG Processing 109/862 atomic regions from SNP 32508 to 33109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,836 DEBUG Processing 44/69 atomic regions from SNP 13080 to 13684 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:44,016 DEBUG Processing 981/1140 atomic regions from SNP 294058 to 294658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,026 DEBUG Processing 110/862 atomic regions from SNP 32809 to 33410 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,083 DEBUG Processing 45/69 atomic regions from SNP 13384 to 13988 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:44,293 DEBUG Processing 111/862 atomic regions from SNP 33110 to 33711 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,305 DEBUG Processing 982/1140 atomic regions from SNP 294358 to 294958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,337 DEBUG Processing 46/69 atomic regions from SNP 13688 to 14292 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:44,555 DEBUG Processing 112/862 atomic regions from SNP 33411 to 34012 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,595 DEBUG Processing 47/69 atomic regions from SNP 13992 to 14596 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:44,595 DEBUG Processing 983/1140 atomic regions from SNP 294658 to 295258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,813 DEBUG Processing 113/862 atomic regions from SNP 33712 to 34313 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,857 DEBUG Processing 48/69 atomic regions from SNP 14296 to 14900 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:44,887 DEBUG Processing 984/1140 atomic regions from SNP 294958 to 295558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,065 DEBUG Processing 114/862 atomic regions from SNP 34013 to 34614 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,134 DEBUG Processing 49/69 atomic regions from SNP 14600 to 15204 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:45,174 DEBUG Processing 985/1140 atomic regions from SNP 295258 to 295858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,320 DEBUG Processing 115/862 atomic regions from SNP 34314 to 34915 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,402 DEBUG Processing 50/69 atomic regions from SNP 14904 to 15508 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:45,455 DEBUG Processing 986/1140 atomic regions from SNP 295558 to 296158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,580 DEBUG Processing 116/862 atomic regions from SNP 34615 to 35216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,681 DEBUG Processing 51/69 atomic regions from SNP 15208 to 15812 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:45,740 DEBUG Processing 987/1140 atomic regions from SNP 295858 to 296458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,837 DEBUG Processing 117/862 atomic regions from SNP 34916 to 35517 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,951 DEBUG Processing 52/69 atomic regions from SNP 15512 to 16116 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:46,029 DEBUG Processing 988/1140 atomic regions from SNP 296158 to 296758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,093 DEBUG Processing 118/862 atomic regions from SNP 35217 to 35818 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,210 DEBUG Processing 53/69 atomic regions from SNP 15816 to 16420 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:46,317 DEBUG Processing 989/1140 atomic regions from SNP 296458 to 297058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,348 DEBUG Processing 119/862 atomic regions from SNP 35518 to 36119 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,487 DEBUG Processing 54/69 atomic regions from SNP 16120 to 16724 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:46,601 DEBUG Processing 120/862 atomic regions from SNP 35819 to 36420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,606 DEBUG Processing 990/1140 atomic regions from SNP 296758 to 297358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,769 DEBUG Processing 55/69 atomic regions from SNP 16424 to 17028 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:46,861 DEBUG Processing 121/862 atomic regions from SNP 36120 to 36721 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,903 DEBUG Processing 991/1140 atomic regions from SNP 297058 to 297658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,033 DEBUG Processing 56/69 atomic regions from SNP 16728 to 17332 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:47,122 DEBUG Processing 122/862 atomic regions from SNP 36421 to 37022 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,201 DEBUG Processing 992/1140 atomic regions from SNP 297358 to 297958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,280 DEBUG Processing 57/69 atomic regions from SNP 17032 to 17636 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:47,388 DEBUG Processing 123/862 atomic regions from SNP 36722 to 37323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,514 DEBUG Processing 993/1140 atomic regions from SNP 297658 to 298258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,523 DEBUG Processing 58/69 atomic regions from SNP 17336 to 17940 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:47,644 DEBUG Processing 124/862 atomic regions from SNP 37023 to 37624 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,772 DEBUG Processing 59/69 atomic regions from SNP 17640 to 18244 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:47,839 DEBUG Processing 994/1140 atomic regions from SNP 297958 to 298558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,896 DEBUG Processing 125/862 atomic regions from SNP 37324 to 37925 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,026 DEBUG Processing 60/69 atomic regions from SNP 17944 to 18548 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:48,148 DEBUG Processing 126/862 atomic regions from SNP 37625 to 38226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,162 DEBUG Processing 995/1140 atomic regions from SNP 298258 to 298858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,280 DEBUG Processing 61/69 atomic regions from SNP 18248 to 18852 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:48,405 DEBUG Processing 127/862 atomic regions from SNP 37926 to 38527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,490 DEBUG Processing 996/1140 atomic regions from SNP 298558 to 299158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,535 DEBUG Processing 62/69 atomic regions from SNP 18552 to 19156 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:48,667 DEBUG Processing 128/862 atomic regions from SNP 38227 to 38828 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,782 DEBUG Processing 997/1140 atomic regions from SNP 298858 to 299458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,783 DEBUG Processing 63/69 atomic regions from SNP 18856 to 19460 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:48,932 DEBUG Processing 129/862 atomic regions from SNP 38528 to 39129 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,051 DEBUG Processing 64/69 atomic regions from SNP 19160 to 19764 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:49,069 DEBUG Processing 998/1140 atomic regions from SNP 299158 to 299758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,194 DEBUG Processing 130/862 atomic regions from SNP 38829 to 39430 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,339 DEBUG Processing 65/69 atomic regions from SNP 19464 to 20068 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:49,366 DEBUG Processing 999/1140 atomic regions from SNP 299458 to 300058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,450 DEBUG Processing 131/862 atomic regions from SNP 39130 to 39731 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,631 DEBUG Processing 66/69 atomic regions from SNP 19768 to 20372 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:49,679 DEBUG Processing 1000/1140 atomic regions from SNP 299758 to 300358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,703 DEBUG Processing 132/862 atomic regions from SNP 39431 to 40032 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,923 DEBUG Processing 67/69 atomic regions from SNP 20072 to 20676 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:49,963 DEBUG Processing 133/862 atomic regions from SNP 39732 to 40333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,000 DEBUG Processing 1001/1140 atomic regions from SNP 300058 to 300658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,214 DEBUG Processing 68/69 atomic regions from SNP 20376 to 20980 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:50,227 DEBUG Processing 134/862 atomic regions from SNP 40033 to 40634 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,304 DEBUG Processing 1002/1140 atomic regions from SNP 300358 to 300958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,487 DEBUG Processing 135/862 atomic regions from SNP 40334 to 40935 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,489 DEBUG Processing 69/69 atomic regions from SNP 20680 to 21284 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:50,589 DEBUG Processing 1003/1140 atomic regions from SNP 300658 to 301258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,631 DEBUG Unique SNPs positions in subchromosome 1: 21285 2025-01-31 09:47:50,690 DEBUG Subchromosome time: 20.5366584189469, subchromosome SNPs: 21285 2025-01-31 09:47:50,742 DEBUG Processing 136/862 atomic regions from SNP 40635 to 41236 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,744 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:50,879 DEBUG Processing 1004/1140 atomic regions from SNP 300958 to 301558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,996 DEBUG Processing 137/862 atomic regions from SNP 40936 to 41537 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,171 DEBUG Processing 1005/1140 atomic regions from SNP 301258 to 301858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,244 DEBUG Processing 138/862 atomic regions from SNP 41237 to 41838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,454 DEBUG Processing 1006/1140 atomic regions from SNP 301558 to 302158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,494 DEBUG Processing 139/862 atomic regions from SNP 41538 to 42139 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,741 DEBUG Processing 1007/1140 atomic regions from SNP 301858 to 302458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,745 DEBUG Processing 140/862 atomic regions from SNP 41839 to 42440 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,997 DEBUG Processing 141/862 atomic regions from SNP 42140 to 42741 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,027 DEBUG Processing 1008/1140 atomic regions from SNP 302158 to 302758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,247 DEBUG Processing 142/862 atomic regions from SNP 42441 to 43042 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,305 DEBUG Processing 1009/1140 atomic regions from SNP 302458 to 303058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,499 DEBUG Processing 143/862 atomic regions from SNP 42742 to 43343 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,586 DEBUG Processing 1010/1140 atomic regions from SNP 302758 to 303358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,755 DEBUG Processing 144/862 atomic regions from SNP 43043 to 43644 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,868 DEBUG Processing 1011/1140 atomic regions from SNP 303058 to 303658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,019 DEBUG Processing 145/862 atomic regions from SNP 43344 to 43945 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,150 DEBUG Processing 1012/1140 atomic regions from SNP 303358 to 303958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,293 DEBUG Processing 146/862 atomic regions from SNP 43645 to 44246 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,432 DEBUG Processing 1013/1140 atomic regions from SNP 303658 to 304258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,550 DEBUG Processing 147/862 atomic regions from SNP 43946 to 44547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,711 DEBUG Processing 1014/1140 atomic regions from SNP 303958 to 304558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,813 DEBUG Processing 148/862 atomic regions from SNP 44247 to 44848 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,001 DEBUG Processing 1015/1140 atomic regions from SNP 304258 to 304858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,087 DEBUG Processing 149/862 atomic regions from SNP 44548 to 45149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,287 DEBUG Processing 1016/1140 atomic regions from SNP 304558 to 305158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,361 DEBUG Processing 150/862 atomic regions from SNP 44849 to 45450 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,570 DEBUG Processing 1017/1140 atomic regions from SNP 304858 to 305458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,638 DEBUG Processing 151/862 atomic regions from SNP 45150 to 45751 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,852 DEBUG Processing 1018/1140 atomic regions from SNP 305158 to 305758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,908 DEBUG Processing 152/862 atomic regions from SNP 45451 to 46052 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,139 DEBUG Processing 1019/1140 atomic regions from SNP 305458 to 306058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,182 DEBUG Processing 153/862 atomic regions from SNP 45752 to 46353 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,422 DEBUG Processing 1020/1140 atomic regions from SNP 305758 to 306358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,467 DEBUG Processing 154/862 atomic regions from SNP 46053 to 46654 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,723 DEBUG Processing 1021/1140 atomic regions from SNP 306058 to 306658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,743 DEBUG Processing 155/862 atomic regions from SNP 46354 to 46955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,007 DEBUG Processing 156/862 atomic regions from SNP 46655 to 47256 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,016 DEBUG Processing 1022/1140 atomic regions from SNP 306358 to 306958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,286 DEBUG Processing 157/862 atomic regions from SNP 46956 to 47557 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,302 DEBUG Processing 1023/1140 atomic regions from SNP 306658 to 307258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,554 DEBUG Processing 158/862 atomic regions from SNP 47257 to 47858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,590 DEBUG Processing 1024/1140 atomic regions from SNP 306958 to 307558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,811 DEBUG Processing 159/862 atomic regions from SNP 47558 to 48159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,877 DEBUG Processing 1025/1140 atomic regions from SNP 307258 to 307858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,064 DEBUG Processing 160/862 atomic regions from SNP 47859 to 48460 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,166 DEBUG Processing 1026/1140 atomic regions from SNP 307558 to 308158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,309 DEBUG Processing 161/862 atomic regions from SNP 48160 to 48761 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,451 DEBUG Processing 1027/1140 atomic regions from SNP 307858 to 308458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,562 DEBUG Processing 162/862 atomic regions from SNP 48461 to 49062 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,744 DEBUG Processing 1028/1140 atomic regions from SNP 308158 to 308758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,830 DEBUG Processing 163/862 atomic regions from SNP 48762 to 49363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,028 DEBUG Processing 1029/1140 atomic regions from SNP 308458 to 309058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,097 DEBUG Processing 164/862 atomic regions from SNP 49063 to 49664 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,316 DEBUG Processing 1030/1140 atomic regions from SNP 308758 to 309358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,371 DEBUG Processing 165/862 atomic regions from SNP 49364 to 49965 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,606 DEBUG Processing 1031/1140 atomic regions from SNP 309058 to 309658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,653 DEBUG Processing 166/862 atomic regions from SNP 49665 to 50266 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,896 DEBUG Processing 1032/1140 atomic regions from SNP 309358 to 309958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,915 DEBUG Processing 167/862 atomic regions from SNP 49966 to 50567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,166 DEBUG Processing 168/862 atomic regions from SNP 50267 to 50867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,183 DEBUG Processing 1033/1140 atomic regions from SNP 309658 to 310258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,422 DEBUG Processing 169/862 atomic regions from SNP 50567 to 51167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,471 DEBUG Processing 1034/1140 atomic regions from SNP 309958 to 310558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,693 DEBUG Processing 170/862 atomic regions from SNP 50867 to 51467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,758 DEBUG Processing 1035/1140 atomic regions from SNP 310258 to 310858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,969 DEBUG Processing 171/862 atomic regions from SNP 51167 to 51767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,059 DEBUG Processing 1036/1140 atomic regions from SNP 310558 to 311158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,241 DEBUG Processing 172/862 atomic regions from SNP 51467 to 52067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,382 DEBUG Processing 1037/1140 atomic regions from SNP 310858 to 311458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,492 DEBUG Processing 173/862 atomic regions from SNP 51767 to 52367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,691 DEBUG Processing 1038/1140 atomic regions from SNP 311158 to 311758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,714 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:48:00,745 DEBUG Processing 174/862 atomic regions from SNP 52067 to 52667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,993 DEBUG Processing 1039/1140 atomic regions from SNP 311458 to 312058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,009 DEBUG Processing 175/862 atomic regions from SNP 52367 to 52967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,273 DEBUG Processing 176/862 atomic regions from SNP 52667 to 53267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,298 DEBUG Processing 1040/1140 atomic regions from SNP 311758 to 312358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,535 DEBUG Processing 177/862 atomic regions from SNP 52967 to 53567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,599 DEBUG Processing 1041/1140 atomic regions from SNP 312058 to 312658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,803 DEBUG Processing 178/862 atomic regions from SNP 53267 to 53867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,891 DEBUG Processing 1042/1140 atomic regions from SNP 312358 to 312958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,070 DEBUG Processing 179/862 atomic regions from SNP 53567 to 54167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,174 DEBUG Processing 1043/1140 atomic regions from SNP 312658 to 313258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,331 DEBUG Processing 180/862 atomic regions from SNP 53867 to 54467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,476 DEBUG Processing 1044/1140 atomic regions from SNP 312958 to 313558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,601 DEBUG Processing 181/862 atomic regions from SNP 54167 to 54767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,799 DEBUG Processing 1045/1140 atomic regions from SNP 313258 to 313858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,873 DEBUG Processing 182/862 atomic regions from SNP 54467 to 55067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,120 DEBUG Processing 1046/1140 atomic regions from SNP 313558 to 314158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,142 DEBUG Processing 183/862 atomic regions from SNP 54767 to 55367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,402 DEBUG Processing 184/862 atomic regions from SNP 55067 to 55667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,427 DEBUG Processing 1047/1140 atomic regions from SNP 313858 to 314458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,659 DEBUG Processing 185/862 atomic regions from SNP 55367 to 55967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,742 DEBUG Processing 1048/1140 atomic regions from SNP 314158 to 314758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,940 DEBUG Processing 186/862 atomic regions from SNP 55667 to 56267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,064 DEBUG Processing 1049/1140 atomic regions from SNP 314458 to 315058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,205 DEBUG Processing 187/862 atomic regions from SNP 55967 to 56567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,390 DEBUG Processing 1050/1140 atomic regions from SNP 314758 to 315358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,467 DEBUG Processing 188/862 atomic regions from SNP 56267 to 56867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,709 DEBUG Processing 1051/1140 atomic regions from SNP 315058 to 315658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,742 DEBUG Processing 189/862 atomic regions from SNP 56567 to 57167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,997 DEBUG Processing 190/862 atomic regions from SNP 56867 to 57467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,035 DEBUG Processing 1052/1140 atomic regions from SNP 315358 to 315958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,254 DEBUG Processing 191/862 atomic regions from SNP 57167 to 57767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,365 DEBUG Processing 1053/1140 atomic regions from SNP 315658 to 316258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,517 DEBUG Processing 192/862 atomic regions from SNP 57467 to 58067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,678 DEBUG Processing 1054/1140 atomic regions from SNP 315958 to 316558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,782 DEBUG Processing 193/862 atomic regions from SNP 57767 to 58367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,997 DEBUG Processing 1055/1140 atomic regions from SNP 316258 to 316858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,048 DEBUG Processing 194/862 atomic regions from SNP 58067 to 58667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,310 DEBUG Processing 1056/1140 atomic regions from SNP 316558 to 317158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,322 DEBUG Processing 195/862 atomic regions from SNP 58367 to 58967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,585 DEBUG Processing 196/862 atomic regions from SNP 58667 to 59267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,619 DEBUG Processing 1057/1140 atomic regions from SNP 316858 to 317458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,848 DEBUG Processing 197/862 atomic regions from SNP 58967 to 59567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,922 DEBUG Processing 1058/1140 atomic regions from SNP 317158 to 317758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,101 DEBUG Processing 198/862 atomic regions from SNP 59267 to 59867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,223 DEBUG Processing 1059/1140 atomic regions from SNP 317458 to 318058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,349 DEBUG Processing 199/862 atomic regions from SNP 59567 to 60167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,522 DEBUG Processing 1060/1140 atomic regions from SNP 317758 to 318358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,603 DEBUG Processing 200/862 atomic regions from SNP 59867 to 60467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,829 DEBUG Processing 1061/1140 atomic regions from SNP 318058 to 318658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,863 DEBUG Processing 201/862 atomic regions from SNP 60167 to 60767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,130 DEBUG Processing 202/862 atomic regions from SNP 60467 to 61067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,137 DEBUG Processing 1062/1140 atomic regions from SNP 318358 to 318958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,396 DEBUG Processing 203/862 atomic regions from SNP 60767 to 61367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,445 DEBUG Processing 1063/1140 atomic regions from SNP 318658 to 319258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,657 DEBUG Processing 204/862 atomic regions from SNP 61067 to 61667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,734 DEBUG Processing 1064/1140 atomic regions from SNP 318958 to 319558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,913 DEBUG Processing 205/862 atomic regions from SNP 61367 to 61967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,027 DEBUG Processing 1065/1140 atomic regions from SNP 319258 to 319858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,171 DEBUG Processing 206/862 atomic regions from SNP 61667 to 62267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,334 DEBUG Processing 1066/1140 atomic regions from SNP 319558 to 320158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,445 DEBUG Processing 207/862 atomic regions from SNP 61967 to 62567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,474 DEBUG Segmenting atomic regions: 2025-01-31 09:48:09,576 DEBUG Processing 1/755 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,646 DEBUG Processing 1067/1140 atomic regions from SNP 319858 to 320458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,727 DEBUG Processing 208/862 atomic regions from SNP 62267 to 62867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,820 DEBUG Processing 2/755 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,966 DEBUG Processing 1068/1140 atomic regions from SNP 320158 to 320758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,007 DEBUG Processing 209/862 atomic regions from SNP 62567 to 63167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,063 DEBUG Processing 3/755 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,268 DEBUG Processing 1069/1140 atomic regions from SNP 320458 to 321058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,288 DEBUG Processing 210/862 atomic regions from SNP 62867 to 63467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,301 DEBUG Processing 4/755 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,551 DEBUG Processing 5/755 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,558 DEBUG Processing 1070/1140 atomic regions from SNP 320758 to 321358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,574 DEBUG Processing 211/862 atomic regions from SNP 63167 to 63767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,804 DEBUG Processing 6/755 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,843 DEBUG Processing 1071/1140 atomic regions from SNP 321058 to 321658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,854 DEBUG Processing 212/862 atomic regions from SNP 63467 to 64067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,056 DEBUG Processing 7/755 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,134 DEBUG Processing 213/862 atomic regions from SNP 63767 to 64367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,138 DEBUG Processing 1072/1140 atomic regions from SNP 321358 to 321958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,305 DEBUG Processing 8/755 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,414 DEBUG Processing 214/862 atomic regions from SNP 64067 to 64667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,421 DEBUG Processing 1073/1140 atomic regions from SNP 321658 to 322258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,548 DEBUG Processing 9/755 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,671 DEBUG Processing 215/862 atomic regions from SNP 64367 to 64967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,700 DEBUG Processing 1074/1140 atomic regions from SNP 321958 to 322558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,792 DEBUG Processing 10/755 atomic regions from SNP 2709 to 3309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,917 DEBUG Processing 216/862 atomic regions from SNP 64667 to 65267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,991 DEBUG Processing 1075/1140 atomic regions from SNP 322258 to 322858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,037 DEBUG Processing 11/755 atomic regions from SNP 3009 to 3609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,164 DEBUG Processing 217/862 atomic regions from SNP 64967 to 65567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,290 DEBUG Processing 12/755 atomic regions from SNP 3309 to 3909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,303 DEBUG Processing 1076/1140 atomic regions from SNP 322558 to 323158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,421 DEBUG Processing 218/862 atomic regions from SNP 65267 to 65867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,536 DEBUG Processing 13/755 atomic regions from SNP 3609 to 4209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,621 DEBUG Processing 1077/1140 atomic regions from SNP 322858 to 323458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,685 DEBUG Processing 219/862 atomic regions from SNP 65567 to 66167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,774 DEBUG Processing 14/755 atomic regions from SNP 3909 to 4509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,934 DEBUG Processing 1078/1140 atomic regions from SNP 323158 to 323758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,951 DEBUG Processing 220/862 atomic regions from SNP 65867 to 66467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,018 DEBUG Processing 15/755 atomic regions from SNP 4209 to 4809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,216 DEBUG Processing 221/862 atomic regions from SNP 66167 to 66767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,243 DEBUG Processing 1079/1140 atomic regions from SNP 323458 to 324058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,270 DEBUG Processing 16/755 atomic regions from SNP 4509 to 5109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,471 DEBUG Processing 222/862 atomic regions from SNP 66467 to 67067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,560 DEBUG Processing 17/755 atomic regions from SNP 4809 to 5409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,562 DEBUG Processing 1080/1140 atomic regions from SNP 323758 to 324358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,725 DEBUG Processing 223/862 atomic regions from SNP 66767 to 67367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,821 DEBUG Processing 18/755 atomic regions from SNP 5109 to 5709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,880 DEBUG Processing 1081/1140 atomic regions from SNP 324058 to 324658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,978 DEBUG Processing 224/862 atomic regions from SNP 67067 to 67667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,071 DEBUG Processing 19/755 atomic regions from SNP 5409 to 6009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,178 DEBUG Processing 1082/1140 atomic regions from SNP 324358 to 324958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,237 DEBUG Processing 225/862 atomic regions from SNP 67367 to 67967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,324 DEBUG Processing 20/755 atomic regions from SNP 5709 to 6309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,482 DEBUG Processing 1083/1140 atomic regions from SNP 324658 to 325258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,506 DEBUG Processing 226/862 atomic regions from SNP 67667 to 68267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,574 DEBUG Processing 21/755 atomic regions from SNP 6009 to 6609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,767 DEBUG Processing 227/862 atomic regions from SNP 67967 to 68567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,771 DEBUG Processing 1084/1140 atomic regions from SNP 324958 to 325558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,819 DEBUG Processing 22/755 atomic regions from SNP 6309 to 6909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,028 DEBUG Processing 228/862 atomic regions from SNP 68267 to 68867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,055 DEBUG Processing 1085/1140 atomic regions from SNP 325258 to 325858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,065 DEBUG Processing 23/755 atomic regions from SNP 6609 to 7209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,108 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:48:15,110 DEBUG chr8: Signal quantile: 0.995. signal threshold: 15. Best RMSEA: 0.017 2025-01-31 09:48:15,290 DEBUG Processing 229/862 atomic regions from SNP 68567 to 69167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,318 DEBUG Processing 24/755 atomic regions from SNP 6909 to 7509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,346 DEBUG Processing 1086/1140 atomic regions from SNP 325558 to 326158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,558 DEBUG Processing 230/862 atomic regions from SNP 68867 to 69467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,571 DEBUG Processing 25/755 atomic regions from SNP 7209 to 7809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,629 DEBUG Processing 1087/1140 atomic regions from SNP 325858 to 326458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,822 DEBUG Processing 231/862 atomic regions from SNP 69167 to 69767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,826 DEBUG Processing 26/755 atomic regions from SNP 7509 to 8109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,917 DEBUG Processing 1088/1140 atomic regions from SNP 326158 to 326758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,076 DEBUG Processing 232/862 atomic regions from SNP 69467 to 70067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,093 DEBUG Processing 27/755 atomic regions from SNP 7809 to 8409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,206 DEBUG Processing 1089/1140 atomic regions from SNP 326458 to 327058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,330 DEBUG Processing 233/862 atomic regions from SNP 69767 to 70367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,343 DEBUG Processing 28/755 atomic regions from SNP 8109 to 8709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,490 DEBUG Processing 1090/1140 atomic regions from SNP 326758 to 327358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,590 DEBUG Processing 234/862 atomic regions from SNP 70067 to 70667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,596 DEBUG Processing 29/755 atomic regions from SNP 8409 to 9009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,769 DEBUG Processing 1091/1140 atomic regions from SNP 327058 to 327658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,845 DEBUG Processing 30/755 atomic regions from SNP 8709 to 9309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,851 DEBUG Processing 235/862 atomic regions from SNP 70367 to 70967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,939 DEBUG Segmenting atomic regions: 2025-01-31 09:48:17,043 DEBUG Processing 1/710 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,054 DEBUG Processing 1092/1140 atomic regions from SNP 327358 to 327958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,096 DEBUG Processing 31/755 atomic regions from SNP 9009 to 9609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,108 DEBUG Processing 236/862 atomic regions from SNP 70667 to 71267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,298 DEBUG Processing 2/710 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,346 DEBUG Processing 1093/1140 atomic regions from SNP 327658 to 328258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,350 DEBUG Processing 32/755 atomic regions from SNP 9309 to 9909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,373 DEBUG Processing 237/862 atomic regions from SNP 70967 to 71567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,549 DEBUG Processing 3/710 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,605 DEBUG Processing 33/755 atomic regions from SNP 9609 to 10209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,636 DEBUG Processing 1094/1140 atomic regions from SNP 327958 to 328558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,639 DEBUG Processing 238/862 atomic regions from SNP 71267 to 71867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,659 DEBUG chr8 total SNP count: 222356 2025-01-31 09:48:17,659 DEBUG chr8 length: 129401213 2025-01-31 09:48:17,659 DEBUG ----------------------------------------- 2025-01-31 09:48:17,659 INFO Processing SNPs in chr8 2025-01-31 09:48:17,804 DEBUG Processing 4/710 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,864 DEBUG Processing 34/755 atomic regions from SNP 9909 to 10509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,902 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 222356)] 2025-01-31 09:48:17,908 DEBUG Processing 239/862 atomic regions from SNP 71567 to 72167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,932 DEBUG Processing 1095/1140 atomic regions from SNP 328258 to 328858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,046 DEBUG Processing 5/710 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,060 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:18,102 DEBUG Processing 35/755 atomic regions from SNP 10209 to 10809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,162 DEBUG Processing 240/862 atomic regions from SNP 71867 to 72467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,225 DEBUG Processing 1096/1140 atomic regions from SNP 328558 to 329158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,307 DEBUG Processing 6/710 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,345 DEBUG Processing 36/755 atomic regions from SNP 10509 to 11109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,411 DEBUG Processing 241/862 atomic regions from SNP 72167 to 72767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,518 DEBUG Processing 1097/1140 atomic regions from SNP 328858 to 329458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,572 DEBUG Processing 7/710 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,576 DEBUG Processing 37/755 atomic regions from SNP 10809 to 11409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,646 DEBUG Processing 242/862 atomic regions from SNP 72467 to 73067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,815 DEBUG Processing 1098/1140 atomic regions from SNP 329158 to 329758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,816 DEBUG Processing 38/755 atomic regions from SNP 11109 to 11709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,831 DEBUG Processing 8/710 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,891 DEBUG Processing 243/862 atomic regions from SNP 72767 to 73367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,055 DEBUG Processing 39/755 atomic regions from SNP 11409 to 12009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,087 DEBUG Processing 9/710 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,114 DEBUG Processing 1099/1140 atomic regions from SNP 329458 to 330058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,136 DEBUG Processing 244/862 atomic regions from SNP 73067 to 73667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,205 DEBUG Subchromosome time: 370.3237201089505, subchromosome SNPs: 310024 2025-01-31 09:48:19,208 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:19,296 DEBUG Processing 40/755 atomic regions from SNP 11709 to 12309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,361 DEBUG Processing 10/710 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,379 DEBUG Processing 245/862 atomic regions from SNP 73367 to 73967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,410 DEBUG Processing 1100/1140 atomic regions from SNP 329758 to 330358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,537 DEBUG Processing 41/755 atomic regions from SNP 12009 to 12609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,622 DEBUG Processing 246/862 atomic regions from SNP 73667 to 74267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,629 DEBUG Processing 11/710 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,700 DEBUG Processing 1101/1140 atomic regions from SNP 330058 to 330658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,771 DEBUG Processing 42/755 atomic regions from SNP 12309 to 12909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,861 DEBUG Processing 247/862 atomic regions from SNP 73967 to 74567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,893 DEBUG Processing 12/710 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,995 DEBUG Processing 1102/1140 atomic regions from SNP 330358 to 330958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,003 DEBUG Processing 43/755 atomic regions from SNP 12609 to 13209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,102 DEBUG Processing 248/862 atomic regions from SNP 74267 to 74867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,158 DEBUG Segmenting atomic regions: 2025-01-31 09:48:20,159 DEBUG Processing 13/710 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,237 DEBUG Processing 44/755 atomic regions from SNP 12909 to 13509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,287 DEBUG Processing 1103/1140 atomic regions from SNP 330658 to 331258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,312 DEBUG Processing 1/25 atomic regions from SNP 0 to 605 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:20,344 DEBUG Processing 249/862 atomic regions from SNP 74567 to 75167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,418 DEBUG Processing 14/710 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,470 DEBUG Processing 45/755 atomic regions from SNP 13209 to 13809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,588 DEBUG Processing 1104/1140 atomic regions from SNP 330958 to 331558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,600 DEBUG Processing 2/25 atomic regions from SNP 305 to 910 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:20,602 DEBUG Processing 250/862 atomic regions from SNP 74867 to 75467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,685 DEBUG Processing 15/710 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,703 DEBUG Processing 46/755 atomic regions from SNP 13509 to 14109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,853 DEBUG Processing 251/862 atomic regions from SNP 75167 to 75767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,889 DEBUG Processing 1105/1140 atomic regions from SNP 331258 to 331858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,889 DEBUG Processing 3/25 atomic regions from SNP 610 to 1215 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:20,927 DEBUG Processing 16/710 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,941 DEBUG Processing 47/755 atomic regions from SNP 13809 to 14409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,106 DEBUG Processing 252/862 atomic regions from SNP 75467 to 76067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,166 DEBUG Processing 17/710 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,174 DEBUG Processing 48/755 atomic regions from SNP 14109 to 14709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,182 DEBUG Processing 4/25 atomic regions from SNP 915 to 1520 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:21,189 DEBUG Processing 1106/1140 atomic regions from SNP 331558 to 332158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,354 DEBUG Processing 253/862 atomic regions from SNP 75767 to 76367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,403 DEBUG Processing 18/710 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,411 DEBUG Processing 49/755 atomic regions from SNP 14409 to 15009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,473 DEBUG Processing 5/25 atomic regions from SNP 1220 to 1825 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:21,494 DEBUG Processing 1107/1140 atomic regions from SNP 331858 to 332458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,604 DEBUG Processing 254/862 atomic regions from SNP 76067 to 76667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,645 DEBUG Processing 19/710 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,650 DEBUG Processing 50/755 atomic regions from SNP 14709 to 15309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,750 DEBUG Processing 6/25 atomic regions from SNP 1525 to 2130 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:21,804 DEBUG Processing 1108/1140 atomic regions from SNP 332158 to 332758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,847 DEBUG Processing 255/862 atomic regions from SNP 76367 to 76967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,888 DEBUG Processing 20/710 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,894 DEBUG Processing 51/755 atomic regions from SNP 15009 to 15609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,029 DEBUG Processing 7/25 atomic regions from SNP 1830 to 2435 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:22,085 DEBUG Processing 256/862 atomic regions from SNP 76667 to 77267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,099 DEBUG Processing 1109/1140 atomic regions from SNP 332458 to 333058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,129 DEBUG Processing 21/710 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,137 DEBUG Processing 52/755 atomic regions from SNP 15309 to 15909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,301 DEBUG Processing 8/25 atomic regions from SNP 2135 to 2740 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:22,334 DEBUG Processing 257/862 atomic regions from SNP 76967 to 77567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,384 DEBUG Processing 53/755 atomic regions from SNP 15609 to 16209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,388 DEBUG Processing 1110/1140 atomic regions from SNP 332758 to 333358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,394 DEBUG Processing 22/710 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,571 DEBUG Processing 9/25 atomic regions from SNP 2440 to 3045 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:22,584 DEBUG Processing 258/862 atomic regions from SNP 77267 to 77867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,626 DEBUG Processing 54/755 atomic regions from SNP 15909 to 16509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,670 DEBUG Processing 23/710 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,681 DEBUG Processing 1111/1140 atomic regions from SNP 333058 to 333658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,840 DEBUG Processing 259/862 atomic regions from SNP 77567 to 78167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,851 DEBUG Processing 10/25 atomic regions from SNP 2745 to 3350 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:22,867 DEBUG Processing 55/755 atomic regions from SNP 16209 to 16809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,946 DEBUG Processing 24/710 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,971 DEBUG Processing 1112/1140 atomic regions from SNP 333358 to 333958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,099 DEBUG Processing 260/862 atomic regions from SNP 77867 to 78467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,117 DEBUG Processing 56/755 atomic regions from SNP 16509 to 17109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,132 DEBUG Processing 11/25 atomic regions from SNP 3050 to 3655 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:23,224 DEBUG Processing 25/710 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:23,269 DEBUG Processing 1113/1140 atomic regions from SNP 333658 to 334258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,358 DEBUG Processing 57/755 atomic regions from SNP 16809 to 17409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,367 DEBUG Processing 261/862 atomic regions from SNP 78167 to 78767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,424 DEBUG Processing 12/25 atomic regions from SNP 3355 to 3960 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:23,490 DEBUG Processing 26/710 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:23,579 DEBUG Processing 1114/1140 atomic regions from SNP 333958 to 334558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,618 DEBUG Processing 58/755 atomic regions from SNP 17109 to 17709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,643 DEBUG Processing 262/862 atomic regions from SNP 78467 to 79067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,732 DEBUG Processing 13/25 atomic regions from SNP 3660 to 4265 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:23,735 DEBUG Processing 27/710 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:23,875 DEBUG Processing 59/755 atomic regions from SNP 17409 to 18009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,896 DEBUG Processing 1115/1140 atomic regions from SNP 334258 to 334858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,916 DEBUG Processing 263/862 atomic regions from SNP 78767 to 79367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,986 DEBUG Processing 28/710 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,050 DEBUG Processing 14/25 atomic regions from SNP 3965 to 4570 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:24,120 DEBUG Processing 60/755 atomic regions from SNP 17709 to 18309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,171 DEBUG Processing 264/862 atomic regions from SNP 79067 to 79667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,222 DEBUG Processing 1116/1140 atomic regions from SNP 334558 to 335158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,252 DEBUG Processing 29/710 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,354 DEBUG Processing 15/25 atomic regions from SNP 4270 to 4875 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:24,360 DEBUG Processing 61/755 atomic regions from SNP 18009 to 18609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,429 DEBUG Processing 265/862 atomic regions from SNP 79367 to 79967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,521 DEBUG Processing 30/710 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,541 DEBUG Processing 1117/1140 atomic regions from SNP 334858 to 335458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,602 DEBUG Processing 62/755 atomic regions from SNP 18309 to 18909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,673 DEBUG Processing 16/25 atomic regions from SNP 4575 to 5180 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:24,682 DEBUG Processing 266/862 atomic regions from SNP 79667 to 80267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,789 DEBUG Processing 31/710 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,849 DEBUG Processing 63/755 atomic regions from SNP 18609 to 19209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,865 DEBUG Processing 1118/1140 atomic regions from SNP 335158 to 335758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,932 DEBUG Processing 267/862 atomic regions from SNP 79967 to 80567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,990 DEBUG Processing 17/25 atomic regions from SNP 4880 to 5485 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:25,069 DEBUG Processing 32/710 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,107 DEBUG Processing 64/755 atomic regions from SNP 18909 to 19509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,187 DEBUG Processing 268/862 atomic regions from SNP 80267 to 80867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,191 DEBUG Processing 1119/1140 atomic regions from SNP 335458 to 336058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,291 DEBUG Processing 18/25 atomic regions from SNP 5185 to 5790 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:25,346 DEBUG Processing 33/710 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,378 DEBUG Processing 65/755 atomic regions from SNP 19209 to 19809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,446 DEBUG Processing 269/862 atomic regions from SNP 80567 to 81167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,506 DEBUG Processing 1120/1140 atomic regions from SNP 335758 to 336358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,592 DEBUG Processing 19/25 atomic regions from SNP 5490 to 6095 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:25,615 DEBUG Processing 34/710 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,629 DEBUG Processing 66/755 atomic regions from SNP 19509 to 20109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,733 DEBUG Processing 270/862 atomic regions from SNP 80867 to 81467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,834 DEBUG Processing 1121/1140 atomic regions from SNP 336058 to 336658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,871 DEBUG Processing 67/755 atomic regions from SNP 19809 to 20409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,886 DEBUG Processing 35/710 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,905 DEBUG Processing 20/25 atomic regions from SNP 5795 to 6400 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:26,005 DEBUG Processing 271/862 atomic regions from SNP 81167 to 81767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,116 DEBUG Processing 68/755 atomic regions from SNP 20109 to 20709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,153 DEBUG Processing 36/710 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:26,161 DEBUG Processing 1122/1140 atomic regions from SNP 336358 to 336958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,217 DEBUG Processing 21/25 atomic regions from SNP 6100 to 6704 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:26,250 DEBUG Processing 272/862 atomic regions from SNP 81467 to 82067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,354 DEBUG Processing 69/755 atomic regions from SNP 20409 to 21009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,395 DEBUG Processing 37/710 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:26,474 DEBUG Processing 1123/1140 atomic regions from SNP 336658 to 337258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,499 DEBUG Processing 273/862 atomic regions from SNP 81767 to 82367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,532 DEBUG Processing 22/25 atomic regions from SNP 6404 to 7008 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:26,593 DEBUG Processing 70/755 atomic regions from SNP 20709 to 21309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,637 DEBUG Processing 38/710 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:26,753 DEBUG Processing 274/862 atomic regions from SNP 82067 to 82667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,772 DEBUG Processing 1124/1140 atomic regions from SNP 336958 to 337558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,834 DEBUG Processing 71/755 atomic regions from SNP 21009 to 21609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,845 DEBUG Processing 23/25 atomic regions from SNP 6708 to 7312 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:26,876 DEBUG Processing 39/710 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:27,009 DEBUG Processing 275/862 atomic regions from SNP 82367 to 82967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,067 DEBUG Processing 1125/1140 atomic regions from SNP 337258 to 337858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,076 DEBUG Processing 72/755 atomic regions from SNP 21309 to 21909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:27,126 DEBUG Processing 40/710 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:27,156 DEBUG Processing 24/25 atomic regions from SNP 7012 to 7616 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:27,271 DEBUG Processing 276/862 atomic regions from SNP 82667 to 83267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,322 DEBUG Processing 73/755 atomic regions from SNP 21609 to 22209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:27,365 DEBUG Processing 1126/1140 atomic regions from SNP 337558 to 338158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,399 DEBUG Processing 41/710 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:27,470 DEBUG Processing 25/25 atomic regions from SNP 7316 to 7920 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:27,532 DEBUG Processing 277/862 atomic regions from SNP 82967 to 83567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,571 DEBUG Processing 74/755 atomic regions from SNP 21909 to 22509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:27,630 DEBUG Unique SNPs positions in subchromosome 2: 7921 2025-01-31 09:48:27,641 DEBUG Subchromosome time: 8.432972847018391, subchromosome SNPs: 7921 2025-01-31 09:48:27,641 DEBUG Estimated BADs: [1.54, 0.51, 1.54, 4.61, 3.08, 1.54, 0.38, 0.77, 0.31, 0.77, 0.51, 1.54, 0.38, 0.77, 4.61, 0.31, 1.54, 3.08, 0.31, 1.54, 0.77, 3.08, 0.51, 1.54, 3.08, 1.54, 0.77, 1.54, 3.08, 1.54, 3.08, 1.54, 1.54, 4.61] SNP counts: [22090, 2968, 13632, 15230, 6562, 5843, 7098, 17413, 4774, 11740, 8972, 24582, 3312, 2631, 1254, 7207, 1823, 7786, 9603, 12614, 19001, 7978, 2116, 5392, 7501, 9586, 9319, 19207, 11686, 8720, 9282, 13102, 3545, 4376] SNP IDs counts: [22090, 2968, 13632, 15230, 6562, 5843, 7098, 17413, 4774, 11740, 8972, 24582, 3312, 2631, 1254, 7207, 1823, 7786, 9603, 12614, 19001, 7978, 2116, 5392, 7501, 9586, 9319, 19207, 11686, 8720, 9282, 13102, 3545, 4376] Critical gap: 723113bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 15.35Mbp, 17.09Mbp, 24.92Mbp, 32.93Mbp, 36.39Mbp, 39.70Mbp, 43.76Mbp, 53.39Mbp, 56.29Mbp, 62.80Mbp, 67.82Mbp, 81.02Mbp, 83.00Mbp, 84.65Mbp, 85.34Mbp, 89.64Mbp, 90.89Mbp, 95.01Mbp, 101.10Mbp, 107.92Mbp, 118.65Mbp, 122.93Mbp, 124.14Mbp, 127.08Mbp, 131.04Mbp, 136.26Mbp, 141.44Mbp, 152.32Mbp, 158.52Mbp, 163.20Mbp, 168.11Mbp, 175.18Mbp[1.52Mbp], 179.70Mbp, 182.11Mbp] 2025-01-31 09:48:27,641 DEBUG chr2 time: 8.433606866979972 s 2025-01-31 09:48:27,654 DEBUG Processing 1127/1140 atomic regions from SNP 337858 to 338458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,670 DEBUG Processing 42/710 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:27,786 DEBUG Processing 278/862 atomic regions from SNP 83267 to 83867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,817 DEBUG Processing 75/755 atomic regions from SNP 22209 to 22809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:27,818 DEBUG chr2: Fitting background model for 34 segments 2025-01-31 09:48:27,951 DEBUG Processing 43/710 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:27,957 DEBUG Processing 1128/1140 atomic regions from SNP 338158 to 338758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,043 DEBUG Processing 279/862 atomic regions from SNP 83567 to 84167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,062 DEBUG Processing 76/755 atomic regions from SNP 22509 to 23109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:28,228 DEBUG Processing 44/710 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,268 DEBUG Processing 1129/1140 atomic regions from SNP 338458 to 339058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,303 DEBUG Processing 280/862 atomic regions from SNP 83867 to 84467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,313 DEBUG Processing 77/755 atomic regions from SNP 22809 to 23409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:28,490 DEBUG Processing 45/710 atomic regions from SNP 13244 to 13845 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,564 DEBUG Processing 78/755 atomic regions from SNP 23109 to 23709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:28,565 DEBUG Processing 281/862 atomic regions from SNP 84167 to 84767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,572 DEBUG Processing 1130/1140 atomic regions from SNP 338758 to 339358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,743 DEBUG Processing 46/710 atomic regions from SNP 13545 to 14146 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,817 DEBUG Processing 79/755 atomic regions from SNP 23409 to 24009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:28,828 DEBUG Processing 282/862 atomic regions from SNP 84467 to 85067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,878 DEBUG Processing 1131/1140 atomic regions from SNP 339058 to 339658 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,986 DEBUG Processing 47/710 atomic regions from SNP 13846 to 14447 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:29,073 DEBUG Processing 80/755 atomic regions from SNP 23709 to 24309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,092 DEBUG Processing 283/862 atomic regions from SNP 84767 to 85367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,194 DEBUG Processing 1132/1140 atomic regions from SNP 339358 to 339958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,229 DEBUG Processing 48/710 atomic regions from SNP 14147 to 14748 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:29,319 DEBUG Processing 81/755 atomic regions from SNP 24009 to 24609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,363 DEBUG Processing 284/862 atomic regions from SNP 85067 to 85667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,488 DEBUG Processing 49/710 atomic regions from SNP 14448 to 15049 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:29,496 DEBUG Processing 1133/1140 atomic regions from SNP 339658 to 340258 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,572 DEBUG Processing 82/755 atomic regions from SNP 24309 to 24909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,626 DEBUG Processing 285/862 atomic regions from SNP 85367 to 85967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,754 DEBUG Processing 50/710 atomic regions from SNP 14749 to 15350 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:29,800 DEBUG Processing 1134/1140 atomic regions from SNP 339958 to 340558 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,820 DEBUG Processing 83/755 atomic regions from SNP 24609 to 25209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,885 DEBUG Processing 286/862 atomic regions from SNP 85667 to 86267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,020 DEBUG Processing 51/710 atomic regions from SNP 15050 to 15651 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,077 DEBUG Processing 84/755 atomic regions from SNP 24909 to 25509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,104 DEBUG Processing 1135/1140 atomic regions from SNP 340258 to 340858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,148 DEBUG Processing 287/862 atomic regions from SNP 85967 to 86567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,276 DEBUG Processing 52/710 atomic regions from SNP 15351 to 15952 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,328 DEBUG Processing 85/755 atomic regions from SNP 25209 to 25809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,401 DEBUG Processing 1136/1140 atomic regions from SNP 340558 to 341158 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,404 DEBUG Processing 288/862 atomic regions from SNP 86267 to 86867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,518 DEBUG Processing 53/710 atomic regions from SNP 15652 to 16253 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,569 DEBUG Processing 86/755 atomic regions from SNP 25509 to 26109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,656 DEBUG Processing 289/862 atomic regions from SNP 86567 to 87167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,701 DEBUG Processing 1137/1140 atomic regions from SNP 340858 to 341458 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,754 DEBUG Processing 54/710 atomic regions from SNP 15953 to 16554 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,801 DEBUG Processing 87/755 atomic regions from SNP 25809 to 26409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,913 DEBUG Processing 290/862 atomic regions from SNP 86867 to 87467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,997 DEBUG Processing 55/710 atomic regions from SNP 16254 to 16855 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,023 DEBUG Processing 1138/1140 atomic regions from SNP 341158 to 341758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,034 DEBUG Processing 88/755 atomic regions from SNP 26109 to 26709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,168 DEBUG Processing 291/862 atomic regions from SNP 87167 to 87767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,241 DEBUG Processing 56/710 atomic regions from SNP 16555 to 17156 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,268 DEBUG Processing 89/755 atomic regions from SNP 26409 to 27009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,320 DEBUG Processing 1139/1140 atomic regions from SNP 341458 to 342058 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,420 DEBUG Processing 292/862 atomic regions from SNP 87467 to 88067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,478 DEBUG Processing 57/710 atomic regions from SNP 16856 to 17457 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,508 DEBUG Processing 90/755 atomic regions from SNP 26709 to 27309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,627 DEBUG Processing 1140/1140 atomic regions from SNP 341758 to 342358 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,678 DEBUG Processing 293/862 atomic regions from SNP 87767 to 88367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,724 DEBUG Processing 58/710 atomic regions from SNP 17157 to 17758 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,754 DEBUG Processing 91/755 atomic regions from SNP 27009 to 27609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,785 DEBUG Unique SNPs positions in subchromosome 1: 342359 2025-01-31 09:48:31,929 DEBUG Processing 294/862 atomic regions from SNP 88067 to 88667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,970 DEBUG Processing 59/710 atomic regions from SNP 17458 to 18059 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,006 DEBUG Processing 92/755 atomic regions from SNP 27309 to 27909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,181 DEBUG Processing 295/862 atomic regions from SNP 88367 to 88967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,220 DEBUG Processing 60/710 atomic regions from SNP 17759 to 18360 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,257 DEBUG Processing 93/755 atomic regions from SNP 27609 to 28209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,437 DEBUG Processing 296/862 atomic regions from SNP 88667 to 89267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,483 DEBUG Processing 61/710 atomic regions from SNP 18060 to 18661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,508 DEBUG Processing 94/755 atomic regions from SNP 27909 to 28509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,695 DEBUG Processing 297/862 atomic regions from SNP 88967 to 89567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,751 DEBUG Processing 62/710 atomic regions from SNP 18361 to 18962 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,757 DEBUG Processing 95/755 atomic regions from SNP 28209 to 28809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,958 DEBUG Processing 298/862 atomic regions from SNP 89267 to 89867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,010 DEBUG Processing 96/755 atomic regions from SNP 28509 to 29109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,019 DEBUG Processing 63/710 atomic regions from SNP 18662 to 19263 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,221 DEBUG Processing 299/862 atomic regions from SNP 89567 to 90167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,258 DEBUG Processing 97/755 atomic regions from SNP 28809 to 29409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,288 DEBUG Processing 64/710 atomic regions from SNP 18963 to 19564 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,483 DEBUG Processing 300/862 atomic regions from SNP 89867 to 90467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,510 DEBUG Processing 98/755 atomic regions from SNP 29109 to 29709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,542 DEBUG Processing 65/710 atomic regions from SNP 19264 to 19865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,743 DEBUG Processing 301/862 atomic regions from SNP 90167 to 90767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,765 DEBUG Processing 99/755 atomic regions from SNP 29409 to 30009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,787 DEBUG Processing 66/710 atomic regions from SNP 19565 to 20166 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,998 DEBUG Processing 302/862 atomic regions from SNP 90467 to 91067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,027 DEBUG Processing 100/755 atomic regions from SNP 29709 to 30309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,032 DEBUG Processing 67/710 atomic regions from SNP 19866 to 20467 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,255 DEBUG Processing 303/862 atomic regions from SNP 90767 to 91367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,275 DEBUG Processing 68/710 atomic regions from SNP 20167 to 20768 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,284 DEBUG Processing 101/755 atomic regions from SNP 30009 to 30609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,515 DEBUG Processing 69/710 atomic regions from SNP 20468 to 21069 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,518 DEBUG Processing 304/862 atomic regions from SNP 91067 to 91667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,550 DEBUG Processing 102/755 atomic regions from SNP 30309 to 30909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,752 DEBUG Processing 70/710 atomic regions from SNP 20769 to 21370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,782 DEBUG Processing 305/862 atomic regions from SNP 91367 to 91967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,808 DEBUG Processing 103/755 atomic regions from SNP 30609 to 31209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,990 DEBUG Processing 71/710 atomic regions from SNP 21070 to 21671 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:35,047 DEBUG Processing 306/862 atomic regions from SNP 91667 to 92267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,049 DEBUG Processing 104/755 atomic regions from SNP 30909 to 31509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,227 DEBUG Processing 72/710 atomic regions from SNP 21371 to 21972 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:35,297 DEBUG Processing 105/755 atomic regions from SNP 31209 to 31809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,312 DEBUG Processing 307/862 atomic regions from SNP 91967 to 92567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,461 DEBUG Processing 73/710 atomic regions from SNP 21672 to 22273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:35,542 DEBUG Processing 106/755 atomic regions from SNP 31509 to 32109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,570 DEBUG Processing 308/862 atomic regions from SNP 92267 to 92867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,696 DEBUG Processing 74/710 atomic regions from SNP 21973 to 22574 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:35,792 DEBUG Processing 107/755 atomic regions from SNP 31809 to 32409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,822 DEBUG Processing 309/862 atomic regions from SNP 92567 to 93167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,942 DEBUG Processing 75/710 atomic regions from SNP 22274 to 22875 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:36,035 DEBUG Processing 108/755 atomic regions from SNP 32109 to 32709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,071 DEBUG Processing 310/862 atomic regions from SNP 92867 to 93467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,193 DEBUG Processing 76/710 atomic regions from SNP 22575 to 23176 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:36,291 DEBUG Processing 109/755 atomic regions from SNP 32409 to 33009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,330 DEBUG Processing 311/862 atomic regions from SNP 93167 to 93767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,445 DEBUG Processing 77/710 atomic regions from SNP 22876 to 23477 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:36,534 DEBUG Processing 110/755 atomic regions from SNP 32709 to 33309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,581 DEBUG Processing 312/862 atomic regions from SNP 93467 to 94067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,684 DEBUG Processing 78/710 atomic regions from SNP 23177 to 23778 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:36,774 DEBUG Processing 111/755 atomic regions from SNP 33009 to 33609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,833 DEBUG Processing 313/862 atomic regions from SNP 93767 to 94367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,921 DEBUG Processing 79/710 atomic regions from SNP 23478 to 24079 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:37,015 DEBUG Processing 112/755 atomic regions from SNP 33309 to 33909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,088 DEBUG Processing 314/862 atomic regions from SNP 94067 to 94667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,187 DEBUG Processing 80/710 atomic regions from SNP 23779 to 24380 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:37,257 DEBUG Processing 113/755 atomic regions from SNP 33609 to 34209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,348 DEBUG Processing 315/862 atomic regions from SNP 94367 to 94967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,439 DEBUG Processing 81/710 atomic regions from SNP 24080 to 24681 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:37,505 DEBUG Processing 114/755 atomic regions from SNP 33909 to 34509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,611 DEBUG Processing 316/862 atomic regions from SNP 94667 to 95267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,690 DEBUG Processing 82/710 atomic regions from SNP 24381 to 24982 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:37,752 DEBUG Processing 115/755 atomic regions from SNP 34209 to 34809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,877 DEBUG Processing 317/862 atomic regions from SNP 94967 to 95567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,946 DEBUG Processing 83/710 atomic regions from SNP 24682 to 25283 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:38,000 DEBUG Processing 116/755 atomic regions from SNP 34509 to 35109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,145 DEBUG Processing 318/862 atomic regions from SNP 95267 to 95867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,198 DEBUG Processing 84/710 atomic regions from SNP 24983 to 25584 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:38,249 DEBUG Processing 117/755 atomic regions from SNP 34809 to 35409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,393 DEBUG Processing 319/862 atomic regions from SNP 95567 to 96167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,446 DEBUG Processing 85/710 atomic regions from SNP 25284 to 25885 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:38,500 DEBUG Processing 118/755 atomic regions from SNP 35109 to 35709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,647 DEBUG Processing 320/862 atomic regions from SNP 95867 to 96467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,698 DEBUG Processing 86/710 atomic regions from SNP 25585 to 26186 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:38,751 DEBUG Processing 119/755 atomic regions from SNP 35409 to 36009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,899 DEBUG Processing 321/862 atomic regions from SNP 96167 to 96767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,954 DEBUG Processing 87/710 atomic regions from SNP 25886 to 26487 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:39,003 DEBUG Processing 120/755 atomic regions from SNP 35709 to 36309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,161 DEBUG Processing 322/862 atomic regions from SNP 96467 to 97067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,215 DEBUG Processing 88/710 atomic regions from SNP 26187 to 26788 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:39,259 DEBUG Processing 121/755 atomic regions from SNP 36009 to 36609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,426 DEBUG Processing 323/862 atomic regions from SNP 96767 to 97367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,476 DEBUG Processing 89/710 atomic regions from SNP 26488 to 27089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:39,512 DEBUG Processing 122/755 atomic regions from SNP 36309 to 36909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,683 DEBUG Processing 324/862 atomic regions from SNP 97067 to 97667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,726 DEBUG Processing 90/710 atomic regions from SNP 26789 to 27390 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:39,765 DEBUG Processing 123/755 atomic regions from SNP 36609 to 37209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,938 DEBUG Processing 325/862 atomic regions from SNP 97367 to 97967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,971 DEBUG Processing 91/710 atomic regions from SNP 27090 to 27691 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:40,010 DEBUG Processing 124/755 atomic regions from SNP 36909 to 37509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,191 DEBUG Processing 326/862 atomic regions from SNP 97667 to 98267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,218 DEBUG Processing 92/710 atomic regions from SNP 27391 to 27992 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:40,253 DEBUG Processing 125/755 atomic regions from SNP 37209 to 37809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,461 DEBUG Processing 327/862 atomic regions from SNP 97967 to 98567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,475 DEBUG Processing 93/710 atomic regions from SNP 27692 to 28293 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:40,509 DEBUG Processing 126/755 atomic regions from SNP 37509 to 38109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,728 DEBUG Processing 328/862 atomic regions from SNP 98267 to 98867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,736 DEBUG Processing 94/710 atomic regions from SNP 27993 to 28594 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:40,769 DEBUG Processing 127/755 atomic regions from SNP 37809 to 38409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,990 DEBUG Processing 329/862 atomic regions from SNP 98567 to 99167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,992 DEBUG Processing 95/710 atomic regions from SNP 28294 to 28895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:41,027 DEBUG Processing 128/755 atomic regions from SNP 38109 to 38709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,247 DEBUG Processing 96/710 atomic regions from SNP 28595 to 29196 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:41,252 DEBUG Processing 330/862 atomic regions from SNP 98867 to 99467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,280 DEBUG Processing 129/755 atomic regions from SNP 38409 to 39009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,501 DEBUG Processing 97/710 atomic regions from SNP 28896 to 29497 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:41,509 DEBUG Processing 331/862 atomic regions from SNP 99167 to 99767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,527 DEBUG Processing 130/755 atomic regions from SNP 38709 to 39309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,756 DEBUG Processing 98/710 atomic regions from SNP 29197 to 29798 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:41,766 DEBUG Processing 332/862 atomic regions from SNP 99467 to 100067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,771 DEBUG Processing 131/755 atomic regions from SNP 39009 to 39609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,010 DEBUG Processing 99/710 atomic regions from SNP 29498 to 30099 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,019 DEBUG Processing 132/755 atomic regions from SNP 39309 to 39909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,023 DEBUG Processing 333/862 atomic regions from SNP 99767 to 100367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,261 DEBUG Processing 100/710 atomic regions from SNP 29799 to 30400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,271 DEBUG Processing 133/755 atomic regions from SNP 39609 to 40209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,285 DEBUG Processing 334/862 atomic regions from SNP 100067 to 100667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,506 DEBUG Processing 101/710 atomic regions from SNP 30100 to 30701 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,517 DEBUG Processing 134/755 atomic regions from SNP 39909 to 40509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,540 DEBUG Processing 335/862 atomic regions from SNP 100367 to 100967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,747 DEBUG Processing 102/710 atomic regions from SNP 30401 to 31002 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,758 DEBUG Processing 135/755 atomic regions from SNP 40209 to 40809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,792 DEBUG Processing 336/862 atomic regions from SNP 100667 to 101267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,993 DEBUG Processing 103/710 atomic regions from SNP 30702 to 31303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,008 DEBUG Processing 136/755 atomic regions from SNP 40509 to 41109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,048 DEBUG Processing 337/862 atomic regions from SNP 100967 to 101567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,244 DEBUG Processing 104/710 atomic regions from SNP 31003 to 31604 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,262 DEBUG Processing 137/755 atomic regions from SNP 40809 to 41409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,313 DEBUG Processing 338/862 atomic regions from SNP 101267 to 101867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,491 DEBUG Processing 105/710 atomic regions from SNP 31304 to 31905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,512 DEBUG Processing 138/755 atomic regions from SNP 41109 to 41709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,571 DEBUG Processing 339/862 atomic regions from SNP 101567 to 102167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,741 DEBUG Processing 106/710 atomic regions from SNP 31605 to 32206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,763 DEBUG Processing 139/755 atomic regions from SNP 41409 to 42009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,823 DEBUG Processing 340/862 atomic regions from SNP 101867 to 102467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,996 DEBUG Processing 107/710 atomic regions from SNP 31906 to 32507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,020 DEBUG Processing 140/755 atomic regions from SNP 41709 to 42309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,106 DEBUG Processing 341/862 atomic regions from SNP 102167 to 102767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,301 DEBUG Processing 108/710 atomic regions from SNP 32207 to 32808 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,325 DEBUG Processing 141/755 atomic regions from SNP 42009 to 42609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,368 DEBUG Processing 342/862 atomic regions from SNP 102467 to 103067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,548 DEBUG Processing 109/710 atomic regions from SNP 32508 to 33109 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,573 DEBUG Processing 142/755 atomic regions from SNP 42309 to 42909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,625 DEBUG Processing 343/862 atomic regions from SNP 102767 to 103367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,812 DEBUG Processing 143/755 atomic regions from SNP 42609 to 43209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,815 DEBUG Processing 110/710 atomic regions from SNP 32809 to 33410 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,845 DEBUG Segmenting atomic regions: 2025-01-31 09:48:44,877 DEBUG Processing 344/862 atomic regions from SNP 103067 to 103667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,945 DEBUG Processing 1/740 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,044 DEBUG Processing 144/755 atomic regions from SNP 42909 to 43509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,079 DEBUG Processing 111/710 atomic regions from SNP 33110 to 33711 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,128 DEBUG Processing 345/862 atomic regions from SNP 103367 to 103967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,183 DEBUG Processing 2/740 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,283 DEBUG Processing 145/755 atomic regions from SNP 43209 to 43809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,346 DEBUG Processing 112/710 atomic regions from SNP 33411 to 34012 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,383 DEBUG Processing 346/862 atomic regions from SNP 103667 to 104267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,439 DEBUG Processing 3/740 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,523 DEBUG Processing 146/755 atomic regions from SNP 43509 to 44109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,627 DEBUG Processing 113/710 atomic regions from SNP 33712 to 34313 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,642 DEBUG Processing 347/862 atomic regions from SNP 103967 to 104567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,702 DEBUG Processing 4/740 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,757 DEBUG Processing 147/755 atomic regions from SNP 43809 to 44409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,895 DEBUG Processing 348/862 atomic regions from SNP 104267 to 104867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,907 DEBUG Processing 114/710 atomic regions from SNP 34013 to 34614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,943 DEBUG Processing 5/740 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,994 DEBUG Processing 148/755 atomic regions from SNP 44109 to 44709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,146 DEBUG Processing 349/862 atomic regions from SNP 104567 to 105167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,184 DEBUG Processing 115/710 atomic regions from SNP 34314 to 34915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,185 DEBUG Processing 6/740 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,237 DEBUG Processing 149/755 atomic regions from SNP 44409 to 45009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,393 DEBUG Processing 350/862 atomic regions from SNP 104867 to 105467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,450 DEBUG Processing 7/740 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,458 DEBUG Processing 116/710 atomic regions from SNP 34615 to 35216 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,487 DEBUG Processing 150/755 atomic regions from SNP 44709 to 45309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,638 DEBUG Processing 351/862 atomic regions from SNP 105167 to 105767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,720 DEBUG Processing 8/740 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,733 DEBUG Processing 151/755 atomic regions from SNP 45009 to 45609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,738 DEBUG Processing 117/710 atomic regions from SNP 34916 to 35517 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,881 DEBUG Processing 352/862 atomic regions from SNP 105467 to 106067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,963 DEBUG Processing 9/740 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,981 DEBUG Processing 152/755 atomic regions from SNP 45309 to 45909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,019 DEBUG Processing 118/710 atomic regions from SNP 35217 to 35818 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,133 DEBUG Processing 353/862 atomic regions from SNP 105767 to 106367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,209 DEBUG Processing 10/740 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:47,226 DEBUG Processing 153/755 atomic regions from SNP 45609 to 46209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,299 DEBUG Processing 119/710 atomic regions from SNP 35518 to 36119 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,379 DEBUG Processing 354/862 atomic regions from SNP 106067 to 106667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,446 DEBUG Processing 11/740 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:47,462 DEBUG Processing 154/755 atomic regions from SNP 45909 to 46509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,558 DEBUG Processing 120/710 atomic regions from SNP 35819 to 36420 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,615 DEBUG Processing 355/862 atomic regions from SNP 106367 to 106967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,673 DEBUG Processing 12/740 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:47,689 DEBUG Processing 155/755 atomic regions from SNP 46209 to 46809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,806 DEBUG Processing 121/710 atomic regions from SNP 36120 to 36721 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,859 DEBUG Processing 356/862 atomic regions from SNP 106667 to 107267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,905 DEBUG Processing 13/740 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:47,922 DEBUG Processing 156/755 atomic regions from SNP 46509 to 47109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,056 DEBUG Processing 122/710 atomic regions from SNP 36421 to 37022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,106 DEBUG Processing 357/862 atomic regions from SNP 106967 to 107567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,143 DEBUG Processing 14/740 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,167 DEBUG Processing 157/755 atomic regions from SNP 46809 to 47409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,301 DEBUG Processing 123/710 atomic regions from SNP 36722 to 37323 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,354 DEBUG Processing 358/862 atomic regions from SNP 107267 to 107867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,379 DEBUG Processing 15/740 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,401 DEBUG Processing 158/755 atomic regions from SNP 47109 to 47709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,532 DEBUG Processing 124/710 atomic regions from SNP 37023 to 37624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,594 DEBUG Processing 359/862 atomic regions from SNP 107567 to 108167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,609 DEBUG Processing 16/740 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,634 DEBUG Processing 159/755 atomic regions from SNP 47409 to 48009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,768 DEBUG Processing 125/710 atomic regions from SNP 37324 to 37925 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,836 DEBUG Processing 360/862 atomic regions from SNP 107867 to 108467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,842 DEBUG Processing 17/740 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,869 DEBUG Processing 160/755 atomic regions from SNP 47709 to 48309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,011 DEBUG Processing 126/710 atomic regions from SNP 37625 to 38226 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,081 DEBUG Processing 18/740 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,085 DEBUG Processing 361/862 atomic regions from SNP 108167 to 108767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,106 DEBUG Processing 161/755 atomic regions from SNP 48009 to 48609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,249 DEBUG Processing 127/710 atomic regions from SNP 37926 to 38527 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,319 DEBUG Processing 19/740 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,335 DEBUG Processing 362/862 atomic regions from SNP 108467 to 109067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,343 DEBUG Processing 162/755 atomic regions from SNP 48309 to 48909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,467 DEBUG Processing 128/710 atomic regions from SNP 38227 to 38828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,549 DEBUG Processing 20/740 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,577 DEBUG Processing 163/755 atomic regions from SNP 48609 to 49209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,579 DEBUG Processing 363/862 atomic regions from SNP 108767 to 109367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,690 DEBUG Processing 129/710 atomic regions from SNP 38528 to 39129 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,775 DEBUG Processing 21/740 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,801 DEBUG Processing 164/755 atomic regions from SNP 48909 to 49509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,814 DEBUG Processing 364/862 atomic regions from SNP 109067 to 109667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,913 DEBUG Processing 130/710 atomic regions from SNP 38829 to 39430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,004 DEBUG Processing 22/740 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,025 DEBUG Processing 165/755 atomic regions from SNP 49209 to 49809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,050 DEBUG Processing 365/862 atomic regions from SNP 109367 to 109967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,139 DEBUG Processing 131/710 atomic regions from SNP 39130 to 39731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,231 DEBUG Processing 23/740 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,250 DEBUG Processing 166/755 atomic regions from SNP 49509 to 50109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,288 DEBUG Processing 366/862 atomic regions from SNP 109667 to 110267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,371 DEBUG Processing 132/710 atomic regions from SNP 39431 to 40032 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,460 DEBUG Processing 24/740 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,478 DEBUG Processing 167/755 atomic regions from SNP 49809 to 50409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,536 DEBUG Processing 367/862 atomic regions from SNP 109967 to 110567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,607 DEBUG Processing 133/710 atomic regions from SNP 39732 to 40333 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,684 DEBUG Processing 25/740 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,706 DEBUG Processing 168/755 atomic regions from SNP 50109 to 50709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,780 DEBUG Processing 368/862 atomic regions from SNP 110267 to 110867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,839 DEBUG Processing 134/710 atomic regions from SNP 40033 to 40634 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,908 DEBUG Processing 26/740 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,938 DEBUG Processing 169/755 atomic regions from SNP 50409 to 51009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,031 DEBUG Processing 369/862 atomic regions from SNP 110567 to 111167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,077 DEBUG Processing 135/710 atomic regions from SNP 40334 to 40935 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,138 DEBUG Processing 27/740 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,170 DEBUG Processing 170/755 atomic regions from SNP 50709 to 51309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,278 DEBUG Processing 370/862 atomic regions from SNP 110867 to 111467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,314 DEBUG Processing 136/710 atomic regions from SNP 40635 to 41236 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,372 DEBUG Processing 28/740 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,405 DEBUG Processing 171/755 atomic regions from SNP 51009 to 51609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,516 DEBUG Processing 371/862 atomic regions from SNP 111167 to 111767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,559 DEBUG Processing 137/710 atomic regions from SNP 40936 to 41537 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,595 DEBUG Processing 29/740 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,635 DEBUG Processing 172/755 atomic regions from SNP 51309 to 51909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,754 DEBUG Processing 372/862 atomic regions from SNP 111467 to 112067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,812 DEBUG Processing 138/710 atomic regions from SNP 41237 to 41838 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,824 DEBUG Processing 30/740 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,866 DEBUG Processing 173/755 atomic regions from SNP 51609 to 52209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,994 DEBUG Processing 373/862 atomic regions from SNP 111767 to 112367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,059 DEBUG Processing 31/740 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,069 DEBUG Processing 139/710 atomic regions from SNP 41538 to 42139 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,102 DEBUG Processing 174/755 atomic regions from SNP 51909 to 52509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,236 DEBUG Processing 374/862 atomic regions from SNP 112067 to 112667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,300 DEBUG Processing 32/740 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,324 DEBUG Processing 140/710 atomic regions from SNP 41839 to 42440 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,345 DEBUG Processing 175/755 atomic regions from SNP 52209 to 52809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,496 DEBUG Processing 375/862 atomic regions from SNP 112367 to 112967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,538 DEBUG Processing 33/740 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,568 DEBUG Processing 141/710 atomic regions from SNP 42140 to 42741 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,584 DEBUG Processing 176/755 atomic regions from SNP 52509 to 53109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,775 DEBUG Processing 376/862 atomic regions from SNP 112667 to 113267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,788 DEBUG Processing 34/740 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,821 DEBUG Processing 142/710 atomic regions from SNP 42441 to 43042 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,831 DEBUG Processing 177/755 atomic regions from SNP 52809 to 53409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,056 DEBUG Processing 35/740 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,074 DEBUG Processing 377/862 atomic regions from SNP 112967 to 113567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,098 DEBUG Processing 143/710 atomic regions from SNP 42742 to 43343 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,108 DEBUG Processing 178/755 atomic regions from SNP 53109 to 53709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,299 DEBUG Processing 36/740 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,329 DEBUG Processing 378/862 atomic regions from SNP 113267 to 113867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,344 DEBUG Processing 144/710 atomic regions from SNP 43043 to 43644 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,352 DEBUG Processing 179/755 atomic regions from SNP 53409 to 54009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,534 DEBUG Processing 37/740 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,580 DEBUG Processing 379/862 atomic regions from SNP 113567 to 114167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,583 DEBUG Processing 145/710 atomic regions from SNP 43344 to 43945 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,590 DEBUG Processing 180/755 atomic regions from SNP 53709 to 54309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,768 DEBUG Processing 38/740 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,825 DEBUG Processing 146/710 atomic regions from SNP 43645 to 44246 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,829 DEBUG Processing 181/755 atomic regions from SNP 54009 to 54609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,834 DEBUG Processing 380/862 atomic regions from SNP 113867 to 114467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,008 DEBUG Processing 39/740 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,079 DEBUG Processing 147/710 atomic regions from SNP 43946 to 44547 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,082 DEBUG Processing 182/755 atomic regions from SNP 54309 to 54909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,096 DEBUG Processing 381/862 atomic regions from SNP 114167 to 114767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,262 DEBUG Processing 40/740 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,335 DEBUG Processing 148/710 atomic regions from SNP 44247 to 44848 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,336 DEBUG Processing 183/755 atomic regions from SNP 54609 to 55209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,363 DEBUG Processing 382/862 atomic regions from SNP 114467 to 115067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,505 DEBUG Processing 41/740 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,580 DEBUG Processing 184/755 atomic regions from SNP 54909 to 55509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,584 DEBUG Processing 149/710 atomic regions from SNP 44548 to 45149 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,621 DEBUG Processing 383/862 atomic regions from SNP 114767 to 115367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,744 DEBUG Processing 42/740 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,831 DEBUG Processing 185/755 atomic regions from SNP 55209 to 55809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,838 DEBUG Processing 150/710 atomic regions from SNP 44849 to 45450 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,882 DEBUG Processing 384/862 atomic regions from SNP 115067 to 115667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,983 DEBUG Processing 43/740 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,079 DEBUG Processing 186/755 atomic regions from SNP 55509 to 56109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,086 DEBUG Processing 151/710 atomic regions from SNP 45150 to 45751 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,135 DEBUG Processing 385/862 atomic regions from SNP 115367 to 115967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,214 DEBUG Processing 44/740 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,321 DEBUG Processing 187/755 atomic regions from SNP 55809 to 56409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,332 DEBUG Processing 152/710 atomic regions from SNP 45451 to 46052 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,387 DEBUG Processing 386/862 atomic regions from SNP 115667 to 116267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,437 DEBUG Processing 45/740 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,564 DEBUG Processing 188/755 atomic regions from SNP 56109 to 56709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,573 DEBUG Processing 153/710 atomic regions from SNP 45752 to 46353 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,633 DEBUG Processing 387/862 atomic regions from SNP 115967 to 116567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,662 DEBUG Processing 46/740 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,804 DEBUG Processing 189/755 atomic regions from SNP 56409 to 57009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,818 DEBUG Processing 154/710 atomic regions from SNP 46053 to 46654 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,886 DEBUG Processing 388/862 atomic regions from SNP 116267 to 116867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,918 DEBUG Processing 47/740 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,046 DEBUG Processing 190/755 atomic regions from SNP 56709 to 57309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,061 DEBUG Processing 155/710 atomic regions from SNP 46354 to 46955 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,140 DEBUG Processing 389/862 atomic regions from SNP 116567 to 117167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,161 DEBUG Processing 48/740 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,278 DEBUG Processing 191/755 atomic regions from SNP 57009 to 57609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,293 DEBUG Processing 156/710 atomic regions from SNP 46655 to 47256 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,386 DEBUG Processing 390/862 atomic regions from SNP 116867 to 117467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,402 DEBUG Processing 49/740 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,507 DEBUG Processing 192/755 atomic regions from SNP 57309 to 57909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,526 DEBUG Processing 157/710 atomic regions from SNP 46956 to 47557 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,627 DEBUG Processing 391/862 atomic regions from SNP 117167 to 117767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,654 DEBUG Processing 50/740 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,738 DEBUG Processing 193/755 atomic regions from SNP 57609 to 58209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,763 DEBUG Processing 158/710 atomic regions from SNP 47257 to 47858 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,867 DEBUG Processing 392/862 atomic regions from SNP 117467 to 118067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,914 DEBUG Processing 51/740 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,975 DEBUG Processing 194/755 atomic regions from SNP 57909 to 58509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,007 DEBUG Processing 159/710 atomic regions from SNP 47558 to 48159 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,111 DEBUG Processing 393/862 atomic regions from SNP 117767 to 118367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,163 DEBUG Processing 52/740 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,207 DEBUG Processing 195/755 atomic regions from SNP 58209 to 58809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,248 DEBUG Processing 160/710 atomic regions from SNP 47859 to 48460 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,351 DEBUG Processing 394/862 atomic regions from SNP 118067 to 118667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,390 DEBUG Processing 53/740 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,432 DEBUG Processing 196/755 atomic regions from SNP 58509 to 59109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,482 DEBUG Processing 161/710 atomic regions from SNP 48160 to 48761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,613 DEBUG Processing 54/740 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,618 DEBUG Processing 395/862 atomic regions from SNP 118367 to 118967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,655 DEBUG Processing 197/755 atomic regions from SNP 58809 to 59409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,715 DEBUG Processing 162/710 atomic regions from SNP 48461 to 49062 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,839 DEBUG Processing 55/740 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,871 DEBUG Processing 396/862 atomic regions from SNP 118667 to 119267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,886 DEBUG Processing 198/755 atomic regions from SNP 59109 to 59709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,953 DEBUG Processing 163/710 atomic regions from SNP 48762 to 49363 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,065 DEBUG Processing 56/740 atomic regions from SNP 16555 to 17155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,122 DEBUG Processing 199/755 atomic regions from SNP 59409 to 60009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,126 DEBUG Processing 397/862 atomic regions from SNP 118967 to 119567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,196 DEBUG Processing 164/710 atomic regions from SNP 49063 to 49664 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,291 DEBUG Processing 57/740 atomic regions from SNP 16855 to 17455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,363 DEBUG Processing 200/755 atomic regions from SNP 59709 to 60309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,385 DEBUG Processing 398/862 atomic regions from SNP 119267 to 119867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,443 DEBUG Processing 165/710 atomic regions from SNP 49364 to 49965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,523 DEBUG Processing 58/740 atomic regions from SNP 17155 to 17755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,604 DEBUG Processing 201/755 atomic regions from SNP 60009 to 60609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,660 DEBUG Processing 399/862 atomic regions from SNP 119567 to 120167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,689 DEBUG Processing 166/710 atomic regions from SNP 49665 to 50265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,764 DEBUG Processing 59/740 atomic regions from SNP 17455 to 18055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,840 DEBUG Processing 202/755 atomic regions from SNP 60309 to 60909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,925 DEBUG Processing 400/862 atomic regions from SNP 119867 to 120467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,931 DEBUG Processing 167/710 atomic regions from SNP 49965 to 50565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,010 DEBUG Processing 60/740 atomic regions from SNP 17755 to 18355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,071 DEBUG Processing 203/755 atomic regions from SNP 60609 to 61209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,168 DEBUG Processing 168/710 atomic regions from SNP 50265 to 50865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,184 DEBUG Processing 401/862 atomic regions from SNP 120167 to 120767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,263 DEBUG Processing 61/740 atomic regions from SNP 18055 to 18655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,297 DEBUG Processing 204/755 atomic regions from SNP 60909 to 61509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,397 DEBUG Processing 169/710 atomic regions from SNP 50565 to 51165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,431 DEBUG Processing 402/862 atomic regions from SNP 120467 to 121067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,515 DEBUG Processing 62/740 atomic regions from SNP 18355 to 18955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,527 DEBUG Processing 205/755 atomic regions from SNP 61209 to 61809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,622 DEBUG Processing 170/710 atomic regions from SNP 50865 to 51465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,687 DEBUG Processing 403/862 atomic regions from SNP 120767 to 121367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,754 DEBUG Processing 63/740 atomic regions from SNP 18655 to 19255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,755 DEBUG Processing 206/755 atomic regions from SNP 61509 to 62109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,851 DEBUG Processing 171/710 atomic regions from SNP 51165 to 51765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,954 DEBUG Processing 404/862 atomic regions from SNP 121067 to 121667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,981 DEBUG Processing 207/755 atomic regions from SNP 61809 to 62409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,992 DEBUG Processing 64/740 atomic regions from SNP 18955 to 19555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,082 DEBUG Processing 172/710 atomic regions from SNP 51465 to 52065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,207 DEBUG Processing 208/755 atomic regions from SNP 62109 to 62709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,229 DEBUG Processing 405/862 atomic regions from SNP 121367 to 121967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,233 DEBUG Processing 65/740 atomic regions from SNP 19255 to 19855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,318 DEBUG Processing 173/710 atomic regions from SNP 51765 to 52365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,422 DEBUG Processing 209/755 atomic regions from SNP 62409 to 63009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,452 DEBUG Processing 66/740 atomic regions from SNP 19555 to 20155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,493 DEBUG Processing 406/862 atomic regions from SNP 121667 to 122267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,558 DEBUG Processing 174/710 atomic regions from SNP 52065 to 52665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,639 DEBUG Processing 210/755 atomic regions from SNP 62709 to 63309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,668 DEBUG Processing 67/740 atomic regions from SNP 19855 to 20455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,749 DEBUG Processing 407/862 atomic regions from SNP 121967 to 122567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,785 DEBUG Processing 175/710 atomic regions from SNP 52365 to 52965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,855 DEBUG Processing 211/755 atomic regions from SNP 63009 to 63609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,886 DEBUG Processing 68/740 atomic regions from SNP 20155 to 20755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,996 DEBUG Processing 408/862 atomic regions from SNP 122267 to 122867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,009 DEBUG Processing 176/710 atomic regions from SNP 52665 to 53265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,079 DEBUG Processing 212/755 atomic regions from SNP 63309 to 63909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,110 DEBUG Processing 69/740 atomic regions from SNP 20455 to 21055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,233 DEBUG Processing 409/862 atomic regions from SNP 122567 to 123167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,234 DEBUG Processing 177/710 atomic regions from SNP 52965 to 53565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,301 DEBUG Processing 213/755 atomic regions from SNP 63609 to 64209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,335 DEBUG Processing 70/740 atomic regions from SNP 20755 to 21355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,461 DEBUG Processing 178/710 atomic regions from SNP 53265 to 53865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,469 DEBUG Processing 410/862 atomic regions from SNP 122867 to 123467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,528 DEBUG Processing 214/755 atomic regions from SNP 63909 to 64509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,580 DEBUG Processing 71/740 atomic regions from SNP 21055 to 21655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,693 DEBUG Processing 179/710 atomic regions from SNP 53565 to 54165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,711 DEBUG Processing 411/862 atomic regions from SNP 123167 to 123767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,769 DEBUG Processing 215/755 atomic regions from SNP 64209 to 64809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,828 DEBUG Processing 72/740 atomic regions from SNP 21355 to 21955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,927 DEBUG Processing 180/710 atomic regions from SNP 53865 to 54465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,954 DEBUG Processing 412/862 atomic regions from SNP 123467 to 124067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,009 DEBUG Processing 216/755 atomic regions from SNP 64509 to 65109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,051 DEBUG Processing 73/740 atomic regions from SNP 21655 to 22255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,151 DEBUG Processing 181/710 atomic regions from SNP 54165 to 54765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,194 DEBUG Processing 413/862 atomic regions from SNP 123767 to 124367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,240 DEBUG Processing 217/755 atomic regions from SNP 64809 to 65409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,274 DEBUG Processing 74/740 atomic regions from SNP 21955 to 22555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,382 DEBUG Processing 182/710 atomic regions from SNP 54465 to 55065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,446 DEBUG Processing 414/862 atomic regions from SNP 124067 to 124667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,486 DEBUG Processing 218/755 atomic regions from SNP 65109 to 65709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,508 DEBUG Processing 75/740 atomic regions from SNP 22255 to 22855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,612 DEBUG Processing 183/710 atomic regions from SNP 54765 to 55365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,690 DEBUG Processing 415/862 atomic regions from SNP 124367 to 124967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,731 DEBUG Processing 76/740 atomic regions from SNP 22555 to 23155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,738 DEBUG Processing 219/755 atomic regions from SNP 65409 to 66009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,832 DEBUG Processing 184/710 atomic regions from SNP 55065 to 55665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,928 DEBUG Processing 416/862 atomic regions from SNP 124667 to 125267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,957 DEBUG Processing 77/740 atomic regions from SNP 22855 to 23455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,992 DEBUG Processing 220/755 atomic regions from SNP 65709 to 66309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,058 DEBUG Processing 185/710 atomic regions from SNP 55365 to 55965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,165 DEBUG Processing 417/862 atomic regions from SNP 124967 to 125567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,181 DEBUG Processing 78/740 atomic regions from SNP 23155 to 23755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,227 DEBUG Processing 221/755 atomic regions from SNP 66009 to 66609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,286 DEBUG Processing 186/710 atomic regions from SNP 55665 to 56265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,403 DEBUG Processing 418/862 atomic regions from SNP 125267 to 125867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,404 DEBUG Processing 79/740 atomic regions from SNP 23455 to 24055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,456 DEBUG Processing 222/755 atomic regions from SNP 66309 to 66909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,515 DEBUG Processing 187/710 atomic regions from SNP 55965 to 56565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,626 DEBUG Processing 80/740 atomic regions from SNP 23755 to 24355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,645 DEBUG Processing 419/862 atomic regions from SNP 125567 to 126167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,685 DEBUG Processing 223/755 atomic regions from SNP 66609 to 67209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,740 DEBUG Processing 188/710 atomic regions from SNP 56265 to 56865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,856 DEBUG Processing 81/740 atomic regions from SNP 24055 to 24655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,888 DEBUG Processing 420/862 atomic regions from SNP 125867 to 126467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,922 DEBUG Processing 224/755 atomic regions from SNP 66909 to 67509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,975 DEBUG Processing 189/710 atomic regions from SNP 56565 to 57165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,084 DEBUG Processing 82/740 atomic regions from SNP 24355 to 24955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,134 DEBUG Processing 421/862 atomic regions from SNP 126167 to 126767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,161 DEBUG Processing 225/755 atomic regions from SNP 67209 to 67809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,207 DEBUG Processing 190/710 atomic regions from SNP 56865 to 57465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,313 DEBUG Processing 83/740 atomic regions from SNP 24655 to 25255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,387 DEBUG Processing 422/862 atomic regions from SNP 126467 to 127067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,408 DEBUG Processing 226/755 atomic regions from SNP 67509 to 68109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,438 DEBUG Processing 191/710 atomic regions from SNP 57165 to 57765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,532 DEBUG Processing 84/740 atomic regions from SNP 24955 to 25555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,634 DEBUG Processing 423/862 atomic regions from SNP 126767 to 127367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,656 DEBUG Processing 227/755 atomic regions from SNP 67809 to 68409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,672 DEBUG Processing 192/710 atomic regions from SNP 57465 to 58065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,753 DEBUG Processing 85/740 atomic regions from SNP 25255 to 25855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,877 DEBUG Processing 424/862 atomic regions from SNP 127067 to 127667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,897 DEBUG Processing 228/755 atomic regions from SNP 68109 to 68709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,903 DEBUG Processing 193/710 atomic regions from SNP 57765 to 58365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,978 DEBUG Processing 86/740 atomic regions from SNP 25555 to 26155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,119 DEBUG Processing 425/862 atomic regions from SNP 127367 to 127967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,136 DEBUG Processing 194/710 atomic regions from SNP 58065 to 58665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,136 DEBUG Processing 229/755 atomic regions from SNP 68409 to 69009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,205 DEBUG Processing 87/740 atomic regions from SNP 25855 to 26455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,363 DEBUG Processing 426/862 atomic regions from SNP 127667 to 128267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,373 DEBUG Processing 195/710 atomic regions from SNP 58365 to 58965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,387 DEBUG Processing 230/755 atomic regions from SNP 68709 to 69309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,436 DEBUG Processing 88/740 atomic regions from SNP 26155 to 26755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,613 DEBUG Processing 427/862 atomic regions from SNP 127967 to 128567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,617 DEBUG Processing 196/710 atomic regions from SNP 58665 to 59265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,638 DEBUG Processing 231/755 atomic regions from SNP 69009 to 69609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,666 DEBUG Processing 89/740 atomic regions from SNP 26455 to 27055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,861 DEBUG Processing 197/710 atomic regions from SNP 58965 to 59565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,865 DEBUG Processing 428/862 atomic regions from SNP 128267 to 128867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,897 DEBUG Processing 90/740 atomic regions from SNP 26755 to 27355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,903 DEBUG Processing 232/755 atomic regions from SNP 69309 to 69909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,103 DEBUG Processing 198/710 atomic regions from SNP 59265 to 59865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,120 DEBUG Processing 429/862 atomic regions from SNP 128567 to 129167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,129 DEBUG Processing 91/740 atomic regions from SNP 27055 to 27655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,167 DEBUG Processing 233/755 atomic regions from SNP 69609 to 70209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,349 DEBUG Processing 199/710 atomic regions from SNP 59565 to 60165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,366 DEBUG Processing 92/740 atomic regions from SNP 27355 to 27955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,374 DEBUG Processing 430/862 atomic regions from SNP 128867 to 129467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,430 DEBUG Processing 234/755 atomic regions from SNP 69909 to 70509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,592 DEBUG Processing 200/710 atomic regions from SNP 59865 to 60465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,604 DEBUG Processing 93/740 atomic regions from SNP 27655 to 28255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,622 DEBUG Processing 431/862 atomic regions from SNP 129167 to 129767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,680 DEBUG Processing 235/755 atomic regions from SNP 70209 to 70809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,826 DEBUG Processing 201/710 atomic regions from SNP 60165 to 60765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,837 DEBUG Processing 94/740 atomic regions from SNP 27955 to 28555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,864 DEBUG Processing 432/862 atomic regions from SNP 129467 to 130067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,914 DEBUG Processing 236/755 atomic regions from SNP 70509 to 71109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,058 DEBUG Processing 202/710 atomic regions from SNP 60465 to 61065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,064 DEBUG Processing 95/740 atomic regions from SNP 28255 to 28855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,104 DEBUG Processing 433/862 atomic regions from SNP 129767 to 130367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,154 DEBUG Processing 237/755 atomic regions from SNP 70809 to 71409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,287 DEBUG Processing 96/740 atomic regions from SNP 28555 to 29155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,291 DEBUG Processing 203/710 atomic regions from SNP 60765 to 61365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,348 DEBUG Processing 434/862 atomic regions from SNP 130067 to 130667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,385 DEBUG Processing 238/755 atomic regions from SNP 71109 to 71709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,516 DEBUG Processing 97/740 atomic regions from SNP 28855 to 29455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,528 DEBUG Processing 204/710 atomic regions from SNP 61065 to 61665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,595 DEBUG Processing 435/862 atomic regions from SNP 130367 to 130967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,621 DEBUG Processing 239/755 atomic regions from SNP 71409 to 72009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,741 DEBUG Processing 98/740 atomic regions from SNP 29155 to 29755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,766 DEBUG Processing 205/710 atomic regions from SNP 61365 to 61965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,846 DEBUG Processing 436/862 atomic regions from SNP 130667 to 131267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,878 DEBUG Processing 240/755 atomic regions from SNP 71709 to 72309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,965 DEBUG Processing 99/740 atomic regions from SNP 29455 to 30055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,001 DEBUG Processing 206/710 atomic regions from SNP 61665 to 62265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,082 DEBUG Processing 437/862 atomic regions from SNP 130967 to 131567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,126 DEBUG Processing 241/755 atomic regions from SNP 72009 to 72609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,190 DEBUG Processing 100/740 atomic regions from SNP 29755 to 30355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,237 DEBUG Processing 207/710 atomic regions from SNP 61965 to 62565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,318 DEBUG Processing 438/862 atomic regions from SNP 131267 to 131867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,362 DEBUG Processing 242/755 atomic regions from SNP 72309 to 72909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,417 DEBUG Processing 101/740 atomic regions from SNP 30055 to 30655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,477 DEBUG Processing 208/710 atomic regions from SNP 62265 to 62865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,559 DEBUG Processing 439/862 atomic regions from SNP 131567 to 132167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,600 DEBUG Processing 243/755 atomic regions from SNP 72609 to 73209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,642 DEBUG Processing 102/740 atomic regions from SNP 30355 to 30955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,712 DEBUG Processing 209/710 atomic regions from SNP 62565 to 63165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,798 DEBUG Processing 440/862 atomic regions from SNP 131867 to 132467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,833 DEBUG Processing 244/755 atomic regions from SNP 72909 to 73509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,868 DEBUG Processing 103/740 atomic regions from SNP 30655 to 31255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,944 DEBUG Processing 210/710 atomic regions from SNP 62865 to 63465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,041 DEBUG Processing 441/862 atomic regions from SNP 132167 to 132767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,072 DEBUG Processing 245/755 atomic regions from SNP 73209 to 73809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,106 DEBUG Processing 104/740 atomic regions from SNP 30955 to 31555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,172 DEBUG Processing 211/710 atomic regions from SNP 63165 to 63765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,280 DEBUG Processing 442/862 atomic regions from SNP 132467 to 133067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,309 DEBUG Processing 246/755 atomic regions from SNP 73509 to 74109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,340 DEBUG Processing 105/740 atomic regions from SNP 31255 to 31855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,402 DEBUG Processing 212/710 atomic regions from SNP 63465 to 64065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,520 DEBUG Processing 443/862 atomic regions from SNP 132767 to 133367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,540 DEBUG Processing 247/755 atomic regions from SNP 73809 to 74409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,581 DEBUG Processing 106/740 atomic regions from SNP 31555 to 32155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,636 DEBUG Processing 213/710 atomic regions from SNP 63765 to 64365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,761 DEBUG Processing 444/862 atomic regions from SNP 133067 to 133667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,768 DEBUG Processing 248/755 atomic regions from SNP 74109 to 74709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,815 DEBUG Processing 107/740 atomic regions from SNP 31855 to 32455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,867 DEBUG Processing 214/710 atomic regions from SNP 64065 to 64665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,000 DEBUG Processing 249/755 atomic regions from SNP 74409 to 75009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,004 DEBUG Processing 445/862 atomic regions from SNP 133367 to 133967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,060 DEBUG Processing 108/740 atomic regions from SNP 32155 to 32755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,095 DEBUG Processing 215/710 atomic regions from SNP 64365 to 64965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,243 DEBUG Processing 250/755 atomic regions from SNP 74709 to 75309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,252 DEBUG Processing 446/862 atomic regions from SNP 133667 to 134267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,311 DEBUG Processing 109/740 atomic regions from SNP 32455 to 33055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,327 DEBUG Processing 216/710 atomic regions from SNP 64665 to 65265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,484 DEBUG Processing 251/755 atomic regions from SNP 75009 to 75609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,503 DEBUG Processing 447/862 atomic regions from SNP 133967 to 134567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,543 DEBUG Subchromosome time: 420.7679424670059, subchromosome SNPs: 342359 2025-01-31 09:49:10,543 DEBUG Estimated BADs: [0.77, 3.07, 1.53, 0.77, 1.53, 4.60, 10.74, 1.53, 3.07, 0.51, 1.53, 0.51, 3.07, 1.53, 0.51, 1.53, 4.60, 1.53, 0.38, 1.53, 0.38, 1.53, 3.07, 1.53, 3.07, 1.53, 3.07, 1.53, 3.07, 1.53, 4.60, 1.53] SNP counts: [52362, 11694, 7498, 13805, 39981, 2218, 701, 16824, 17654, 15881, 6314, 17561, 3153, 5096, 2402, 12505, 10309, 5700, 5393, 2673, 8416, 10211, 3004, 15595, 5714, 5154, 2334, 10532, 13172, 10199, 2091, 6213] SNP IDs counts: [52362, 11694, 7498, 13805, 39981, 2218, 701, 16824, 17654, 15881, 6314, 17561, 3153, 5096, 2402, 12505, 10309, 5700, 5393, 2673, 8416, 10211, 3004, 15595, 5714, 5154, 2334, 10532, 13172, 10199, 2091, 6213] Critical gap: 755545bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 33.40Mbp, 39.66Mbp, 43.69Mbp, 51.86Mbp, 73.88Mbp, 75.12Mbp, 75.48Mbp, 84.84Mbp, 94.96Mbp, 104.30Mbp, 107.85Mbp, 118.31Mbp, 119.97Mbp, 122.78Mbp, 124.11Mbp, 131.02Mbp, 136.41Mbp, 139.52Mbp, 142.79Mbp, 144.41Mbp, 149.42Mbp, 154.98Mbp, 156.61Mbp, 165.06Mbp, 168.21Mbp, 171.03Mbp, 172.31Mbp, 178.30Mbp, 185.41Mbp, 190.83Mbp, 191.94Mbp, 195.47Mbp] 2025-01-31 09:49:10,543 DEBUG chr1 time: 420.7686328650452 s 2025-01-31 09:49:10,560 DEBUG Processing 217/710 atomic regions from SNP 64965 to 65565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,565 DEBUG Processing 110/740 atomic regions from SNP 32755 to 33355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,714 DEBUG Processing 252/755 atomic regions from SNP 75309 to 75909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,745 DEBUG chr1: Fitting background model for 32 segments 2025-01-31 09:49:10,751 DEBUG Processing 448/862 atomic regions from SNP 134267 to 134867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,796 DEBUG Processing 218/710 atomic regions from SNP 65265 to 65865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,800 DEBUG Processing 111/740 atomic regions from SNP 33055 to 33655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,944 DEBUG Processing 253/755 atomic regions from SNP 75609 to 76209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,999 DEBUG Processing 449/862 atomic regions from SNP 134567 to 135167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,032 DEBUG Processing 112/740 atomic regions from SNP 33355 to 33955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,043 DEBUG Processing 219/710 atomic regions from SNP 65565 to 66165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,177 DEBUG Processing 254/755 atomic regions from SNP 75909 to 76509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,247 DEBUG Processing 450/862 atomic regions from SNP 134867 to 135467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,261 DEBUG Processing 113/740 atomic regions from SNP 33655 to 34255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,307 DEBUG Processing 220/710 atomic regions from SNP 65865 to 66465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,417 DEBUG Processing 255/755 atomic regions from SNP 76209 to 76809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,491 DEBUG Processing 114/740 atomic regions from SNP 33955 to 34555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,495 DEBUG Processing 451/862 atomic regions from SNP 135167 to 135767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,553 DEBUG Processing 221/710 atomic regions from SNP 66165 to 66765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,655 DEBUG Processing 256/755 atomic regions from SNP 76509 to 77109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,724 DEBUG Processing 115/740 atomic regions from SNP 34255 to 34855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,741 DEBUG Processing 452/862 atomic regions from SNP 135467 to 136067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,785 DEBUG Processing 222/710 atomic regions from SNP 66465 to 67065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,894 DEBUG Processing 257/755 atomic regions from SNP 76809 to 77409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,958 DEBUG Processing 116/740 atomic regions from SNP 34555 to 35155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,985 DEBUG Processing 453/862 atomic regions from SNP 135767 to 136367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,014 DEBUG Processing 223/710 atomic regions from SNP 66765 to 67365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,126 DEBUG Processing 258/755 atomic regions from SNP 77109 to 77709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,184 DEBUG Processing 117/740 atomic regions from SNP 34855 to 35455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,228 DEBUG Processing 454/862 atomic regions from SNP 136067 to 136667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,248 DEBUG Processing 224/710 atomic regions from SNP 67065 to 67665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,360 DEBUG Processing 259/755 atomic regions from SNP 77409 to 78009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,412 DEBUG Processing 118/740 atomic regions from SNP 35155 to 35755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,471 DEBUG Processing 455/862 atomic regions from SNP 136367 to 136967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,475 DEBUG Processing 225/710 atomic regions from SNP 67365 to 67965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,602 DEBUG Processing 260/755 atomic regions from SNP 77709 to 78309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,644 DEBUG Processing 119/740 atomic regions from SNP 35455 to 36055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,704 DEBUG Processing 226/710 atomic regions from SNP 67665 to 68265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,713 DEBUG Processing 456/862 atomic regions from SNP 136667 to 137267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,843 DEBUG Processing 261/755 atomic regions from SNP 78009 to 78609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,879 DEBUG Processing 120/740 atomic regions from SNP 35755 to 36355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,938 DEBUG Processing 227/710 atomic regions from SNP 67965 to 68565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,955 DEBUG Processing 457/862 atomic regions from SNP 136967 to 137567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,078 DEBUG Processing 262/755 atomic regions from SNP 78309 to 78909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,114 DEBUG Processing 121/740 atomic regions from SNP 36055 to 36655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,170 DEBUG Processing 228/710 atomic regions from SNP 68265 to 68865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,198 DEBUG Processing 458/862 atomic regions from SNP 137267 to 137867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,319 DEBUG Processing 263/755 atomic regions from SNP 78609 to 79209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,343 DEBUG Processing 122/740 atomic regions from SNP 36355 to 36955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,400 DEBUG Processing 229/710 atomic regions from SNP 68565 to 69165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,439 DEBUG Processing 459/862 atomic regions from SNP 137567 to 138167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,560 DEBUG Processing 264/755 atomic regions from SNP 78909 to 79509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,579 DEBUG Processing 123/740 atomic regions from SNP 36655 to 37255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,629 DEBUG Processing 230/710 atomic regions from SNP 68865 to 69465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,687 DEBUG Processing 460/862 atomic regions from SNP 137867 to 138467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,800 DEBUG Processing 265/755 atomic regions from SNP 79209 to 79809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,812 DEBUG Processing 124/740 atomic regions from SNP 36955 to 37555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,856 DEBUG Processing 231/710 atomic regions from SNP 69165 to 69765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,930 DEBUG Processing 461/862 atomic regions from SNP 138167 to 138767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,030 DEBUG Processing 266/755 atomic regions from SNP 79509 to 80109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,061 DEBUG Processing 125/740 atomic regions from SNP 37255 to 37855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,089 DEBUG Processing 232/710 atomic regions from SNP 69465 to 70065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,177 DEBUG Processing 462/862 atomic regions from SNP 138467 to 139067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,264 DEBUG Processing 267/755 atomic regions from SNP 79809 to 80409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,308 DEBUG Processing 126/740 atomic regions from SNP 37555 to 38155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,333 DEBUG Processing 233/710 atomic regions from SNP 69765 to 70365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,429 DEBUG Processing 463/862 atomic regions from SNP 138767 to 139367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,493 DEBUG Processing 268/755 atomic regions from SNP 80109 to 80709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,547 DEBUG Processing 127/740 atomic regions from SNP 37855 to 38455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,578 DEBUG Processing 234/710 atomic regions from SNP 70065 to 70665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,674 DEBUG Processing 464/862 atomic regions from SNP 139067 to 139667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,724 DEBUG Processing 269/755 atomic regions from SNP 80409 to 81009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,774 DEBUG Processing 128/740 atomic regions from SNP 38155 to 38755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,810 DEBUG Processing 235/710 atomic regions from SNP 70365 to 70965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,930 DEBUG Processing 465/862 atomic regions from SNP 139367 to 139967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,960 DEBUG Processing 270/755 atomic regions from SNP 80709 to 81309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,004 DEBUG Processing 129/740 atomic regions from SNP 38455 to 39055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,045 DEBUG Processing 236/710 atomic regions from SNP 70665 to 71265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,192 DEBUG Processing 466/862 atomic regions from SNP 139667 to 140267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,200 DEBUG Processing 271/755 atomic regions from SNP 81009 to 81609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,238 DEBUG Processing 130/740 atomic regions from SNP 38755 to 39355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,285 DEBUG Processing 237/710 atomic regions from SNP 70965 to 71565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,437 DEBUG Processing 272/755 atomic regions from SNP 81309 to 81909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,472 DEBUG Processing 131/740 atomic regions from SNP 39055 to 39655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,472 DEBUG Processing 467/862 atomic regions from SNP 139967 to 140567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,528 DEBUG Processing 238/710 atomic regions from SNP 71265 to 71865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,671 DEBUG Processing 273/755 atomic regions from SNP 81609 to 82209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,706 DEBUG Processing 132/740 atomic regions from SNP 39355 to 39955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,751 DEBUG Processing 468/862 atomic regions from SNP 140267 to 140867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,771 DEBUG Processing 239/710 atomic regions from SNP 71565 to 72165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,909 DEBUG Processing 274/755 atomic regions from SNP 81909 to 82509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,943 DEBUG Processing 133/740 atomic regions from SNP 39655 to 40255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,019 DEBUG Processing 240/710 atomic regions from SNP 71865 to 72465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,033 DEBUG Processing 469/862 atomic regions from SNP 140567 to 141167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,143 DEBUG Processing 275/755 atomic regions from SNP 82209 to 82809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,196 DEBUG Processing 134/740 atomic regions from SNP 39955 to 40555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,267 DEBUG Processing 241/710 atomic regions from SNP 72165 to 72765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,306 DEBUG Processing 470/862 atomic regions from SNP 140867 to 141467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,375 DEBUG Processing 276/755 atomic regions from SNP 82509 to 83109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,450 DEBUG Processing 135/740 atomic regions from SNP 40255 to 40855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,507 DEBUG Processing 242/710 atomic regions from SNP 72465 to 73065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,571 DEBUG Processing 471/862 atomic regions from SNP 141167 to 141767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,606 DEBUG Processing 277/755 atomic regions from SNP 82809 to 83409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,687 DEBUG Processing 136/740 atomic regions from SNP 40555 to 41155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,747 DEBUG Processing 243/710 atomic regions from SNP 72765 to 73365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,830 DEBUG Processing 472/862 atomic regions from SNP 141467 to 142067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,842 DEBUG Processing 278/755 atomic regions from SNP 83109 to 83709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,915 DEBUG Processing 137/740 atomic regions from SNP 40855 to 41455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,991 DEBUG Processing 244/710 atomic regions from SNP 73065 to 73665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,073 DEBUG Processing 473/862 atomic regions from SNP 141767 to 142367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,077 DEBUG Processing 279/755 atomic regions from SNP 83409 to 84009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,146 DEBUG Processing 138/740 atomic regions from SNP 41155 to 41755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,240 DEBUG Processing 245/710 atomic regions from SNP 73365 to 73965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,316 DEBUG Processing 280/755 atomic regions from SNP 83709 to 84309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,320 DEBUG Processing 474/862 atomic regions from SNP 142067 to 142667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,383 DEBUG Processing 139/740 atomic regions from SNP 41455 to 42055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,475 DEBUG Processing 246/710 atomic regions from SNP 73665 to 74265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,560 DEBUG Processing 281/755 atomic regions from SNP 84009 to 84609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,577 DEBUG Processing 475/862 atomic regions from SNP 142367 to 142967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,627 DEBUG Processing 140/740 atomic regions from SNP 41755 to 42355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,706 DEBUG Processing 247/710 atomic regions from SNP 73965 to 74565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,792 DEBUG Processing 282/755 atomic regions from SNP 84309 to 84909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,821 DEBUG Processing 476/862 atomic regions from SNP 142667 to 143267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,856 DEBUG Processing 141/740 atomic regions from SNP 42055 to 42655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,936 DEBUG Processing 248/710 atomic regions from SNP 74265 to 74865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,032 DEBUG Processing 283/755 atomic regions from SNP 84609 to 85209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,073 DEBUG Processing 477/862 atomic regions from SNP 142967 to 143567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,096 DEBUG Processing 142/740 atomic regions from SNP 42355 to 42955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,166 DEBUG Processing 249/710 atomic regions from SNP 74565 to 75165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,275 DEBUG Processing 284/755 atomic regions from SNP 84909 to 85509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,334 DEBUG Processing 478/862 atomic regions from SNP 143267 to 143867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,343 DEBUG Processing 143/740 atomic regions from SNP 42655 to 43255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,404 DEBUG Processing 250/710 atomic regions from SNP 74865 to 75465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,513 DEBUG Processing 285/755 atomic regions from SNP 85209 to 85809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,591 DEBUG Processing 144/740 atomic regions from SNP 42955 to 43555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,596 DEBUG Processing 479/862 atomic regions from SNP 143567 to 144167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,645 DEBUG Processing 251/710 atomic regions from SNP 75165 to 75765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,749 DEBUG Processing 286/755 atomic regions from SNP 85509 to 86109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,834 DEBUG Processing 145/740 atomic regions from SNP 43255 to 43855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,852 DEBUG Processing 480/862 atomic regions from SNP 143867 to 144467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,891 DEBUG Processing 252/710 atomic regions from SNP 75465 to 76065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,988 DEBUG Processing 287/755 atomic regions from SNP 85809 to 86409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,068 DEBUG Processing 146/740 atomic regions from SNP 43555 to 44155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,111 DEBUG Processing 481/862 atomic regions from SNP 144167 to 144767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,131 DEBUG Processing 253/710 atomic regions from SNP 75765 to 76365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,222 DEBUG Processing 288/755 atomic regions from SNP 86109 to 86709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,300 DEBUG Processing 147/740 atomic regions from SNP 43855 to 44455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,366 DEBUG Processing 254/710 atomic regions from SNP 76065 to 76665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,385 DEBUG Processing 482/862 atomic regions from SNP 144467 to 145067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,456 DEBUG Processing 289/755 atomic regions from SNP 86409 to 87009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,534 DEBUG Processing 148/740 atomic regions from SNP 44155 to 44755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,600 DEBUG Processing 255/710 atomic regions from SNP 76365 to 76965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,629 DEBUG Processing 483/862 atomic regions from SNP 144767 to 145367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,689 DEBUG Processing 290/755 atomic regions from SNP 86709 to 87309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,766 DEBUG Processing 149/740 atomic regions from SNP 44455 to 45055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,833 DEBUG Processing 256/710 atomic regions from SNP 76665 to 77265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,883 DEBUG Processing 484/862 atomic regions from SNP 145067 to 145667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,929 DEBUG Processing 291/755 atomic regions from SNP 87009 to 87609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,991 DEBUG Processing 150/740 atomic regions from SNP 44755 to 45355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,065 DEBUG Processing 257/710 atomic regions from SNP 76965 to 77565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,151 DEBUG Processing 485/862 atomic regions from SNP 145367 to 145967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,166 DEBUG Processing 292/755 atomic regions from SNP 87309 to 87909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,216 DEBUG Processing 151/740 atomic regions from SNP 45055 to 45655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,301 DEBUG Processing 258/710 atomic regions from SNP 77265 to 77865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,406 DEBUG Processing 293/755 atomic regions from SNP 87609 to 88209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,421 DEBUG Processing 486/862 atomic regions from SNP 145667 to 146267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,446 DEBUG Processing 152/740 atomic regions from SNP 45355 to 45955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,533 DEBUG Processing 259/710 atomic regions from SNP 77565 to 78165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,647 DEBUG Processing 294/755 atomic regions from SNP 87909 to 88509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,685 DEBUG Processing 153/740 atomic regions from SNP 45655 to 46255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,694 DEBUG Processing 487/862 atomic regions from SNP 145967 to 146567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,767 DEBUG Processing 260/710 atomic regions from SNP 77865 to 78465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,882 DEBUG Processing 295/755 atomic regions from SNP 88209 to 88809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,921 DEBUG Processing 154/740 atomic regions from SNP 45955 to 46555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,968 DEBUG Processing 488/862 atomic regions from SNP 146267 to 146867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,002 DEBUG Processing 261/710 atomic regions from SNP 78165 to 78765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,109 DEBUG Processing 296/755 atomic regions from SNP 88509 to 89109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,147 DEBUG Processing 155/740 atomic regions from SNP 46255 to 46855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,240 DEBUG Processing 262/710 atomic regions from SNP 78465 to 79065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,245 DEBUG Processing 489/862 atomic regions from SNP 146567 to 147167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,336 DEBUG Processing 297/755 atomic regions from SNP 88809 to 89409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,372 DEBUG Processing 156/740 atomic regions from SNP 46555 to 47155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,488 DEBUG Processing 263/710 atomic regions from SNP 78765 to 79365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,518 DEBUG Processing 490/862 atomic regions from SNP 146867 to 147467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,570 DEBUG Processing 298/755 atomic regions from SNP 89109 to 89709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,595 DEBUG Processing 157/740 atomic regions from SNP 46855 to 47455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,735 DEBUG Processing 264/710 atomic regions from SNP 79065 to 79665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,795 DEBUG Processing 491/862 atomic regions from SNP 147167 to 147767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,808 DEBUG Processing 299/755 atomic regions from SNP 89409 to 90009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,826 DEBUG Processing 158/740 atomic regions from SNP 47155 to 47755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,976 DEBUG Processing 265/710 atomic regions from SNP 79365 to 79965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,049 DEBUG Processing 300/755 atomic regions from SNP 89709 to 90309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,064 DEBUG Processing 159/740 atomic regions from SNP 47455 to 48055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,072 DEBUG Processing 492/862 atomic regions from SNP 147467 to 148067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,208 DEBUG Processing 266/710 atomic regions from SNP 79665 to 80265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,290 DEBUG Processing 301/755 atomic regions from SNP 90009 to 90609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,304 DEBUG Processing 160/740 atomic regions from SNP 47755 to 48355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,350 DEBUG Processing 493/862 atomic regions from SNP 147767 to 148367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,443 DEBUG Processing 267/710 atomic regions from SNP 79965 to 80565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,530 DEBUG Processing 302/755 atomic regions from SNP 90309 to 90909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,542 DEBUG Processing 161/740 atomic regions from SNP 48055 to 48655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,615 DEBUG Processing 494/862 atomic regions from SNP 148067 to 148667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,676 DEBUG Processing 268/710 atomic regions from SNP 80265 to 80865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,761 DEBUG Processing 303/755 atomic regions from SNP 90609 to 91209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,770 DEBUG Processing 162/740 atomic regions from SNP 48355 to 48955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,872 DEBUG Processing 495/862 atomic regions from SNP 148367 to 148967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,908 DEBUG Processing 269/710 atomic regions from SNP 80565 to 81165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,986 DEBUG Processing 304/755 atomic regions from SNP 90909 to 91509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,995 DEBUG Processing 163/740 atomic regions from SNP 48655 to 49255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,145 DEBUG Processing 270/710 atomic regions from SNP 80865 to 81465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,148 DEBUG Processing 496/862 atomic regions from SNP 148667 to 149267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,227 DEBUG Processing 305/755 atomic regions from SNP 91209 to 91809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,235 DEBUG Processing 164/740 atomic regions from SNP 48955 to 49555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,382 DEBUG Processing 271/710 atomic regions from SNP 81165 to 81765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,425 DEBUG Processing 497/862 atomic regions from SNP 148967 to 149567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,474 DEBUG Processing 306/755 atomic regions from SNP 91509 to 92109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,478 DEBUG Processing 165/740 atomic regions from SNP 49255 to 49855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,619 DEBUG Processing 272/710 atomic regions from SNP 81465 to 82065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,705 DEBUG Processing 498/862 atomic regions from SNP 149267 to 149867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,715 DEBUG Processing 307/755 atomic regions from SNP 91809 to 92409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,720 DEBUG Processing 166/740 atomic regions from SNP 49555 to 50155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,864 DEBUG Processing 273/710 atomic regions from SNP 81765 to 82365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,961 DEBUG Processing 308/755 atomic regions from SNP 92109 to 92709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,963 DEBUG Processing 167/740 atomic regions from SNP 49855 to 50455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,988 DEBUG Processing 499/862 atomic regions from SNP 149567 to 150167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,107 DEBUG Processing 274/710 atomic regions from SNP 82065 to 82665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,201 DEBUG Processing 309/755 atomic regions from SNP 92409 to 93009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,202 DEBUG Processing 168/740 atomic regions from SNP 50155 to 50755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,261 DEBUG Processing 500/862 atomic regions from SNP 149867 to 150467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,353 DEBUG Processing 275/710 atomic regions from SNP 82365 to 82965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,432 DEBUG Processing 169/740 atomic regions from SNP 50455 to 51055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,433 DEBUG Processing 310/755 atomic regions from SNP 92709 to 93309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,531 DEBUG Processing 501/862 atomic regions from SNP 150167 to 150767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,595 DEBUG Processing 276/710 atomic regions from SNP 82665 to 83265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,665 DEBUG Processing 170/740 atomic regions from SNP 50755 to 51355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,666 DEBUG Processing 311/755 atomic regions from SNP 93009 to 93609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,813 DEBUG Processing 502/862 atomic regions from SNP 150467 to 151067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,837 DEBUG Processing 277/710 atomic regions from SNP 82965 to 83565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,902 DEBUG Processing 171/740 atomic regions from SNP 51055 to 51655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,906 DEBUG Processing 312/755 atomic regions from SNP 93309 to 93909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,096 DEBUG Processing 278/710 atomic regions from SNP 83265 to 83865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,103 DEBUG Processing 503/862 atomic regions from SNP 150767 to 151367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,146 DEBUG Processing 172/740 atomic regions from SNP 51355 to 51955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,148 DEBUG Processing 313/755 atomic regions from SNP 93609 to 94209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,364 DEBUG Processing 279/710 atomic regions from SNP 83565 to 84165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,383 DEBUG Processing 504/862 atomic regions from SNP 151067 to 151667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,392 DEBUG Processing 314/755 atomic regions from SNP 93909 to 94509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,395 DEBUG Processing 173/740 atomic regions from SNP 51655 to 52255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,549 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:49:25,605 DEBUG Processing 280/710 atomic regions from SNP 83865 to 84465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,636 DEBUG Processing 315/755 atomic regions from SNP 94209 to 94809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,652 DEBUG Processing 174/740 atomic regions from SNP 51955 to 52555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,656 DEBUG Processing 505/862 atomic regions from SNP 151367 to 151967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,854 DEBUG Processing 281/710 atomic regions from SNP 84165 to 84765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,885 DEBUG Processing 316/755 atomic regions from SNP 94509 to 95109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,909 DEBUG Processing 175/740 atomic regions from SNP 52255 to 52855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,947 DEBUG Processing 506/862 atomic regions from SNP 151667 to 152267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,099 DEBUG Processing 282/710 atomic regions from SNP 84465 to 85065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,137 DEBUG Processing 317/755 atomic regions from SNP 94809 to 95409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,162 DEBUG Processing 176/740 atomic regions from SNP 52555 to 53155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,226 DEBUG Processing 507/862 atomic regions from SNP 151967 to 152567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,337 DEBUG Processing 283/710 atomic regions from SNP 84765 to 85365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,381 DEBUG Processing 318/755 atomic regions from SNP 95109 to 95709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,405 DEBUG Processing 177/740 atomic regions from SNP 52855 to 53455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,491 DEBUG Processing 508/862 atomic regions from SNP 152267 to 152867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,577 DEBUG Processing 284/710 atomic regions from SNP 85065 to 85665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,625 DEBUG Processing 319/755 atomic regions from SNP 95409 to 96009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,650 DEBUG Processing 178/740 atomic regions from SNP 53155 to 53755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,740 DEBUG Processing 509/862 atomic regions from SNP 152567 to 153167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,816 DEBUG Processing 285/710 atomic regions from SNP 85365 to 85965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,864 DEBUG Processing 320/755 atomic regions from SNP 95709 to 96309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,890 DEBUG Processing 179/740 atomic regions from SNP 53455 to 54055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,997 DEBUG Processing 510/862 atomic regions from SNP 152867 to 153467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,057 DEBUG Processing 286/710 atomic regions from SNP 85665 to 86265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,096 DEBUG Processing 321/755 atomic regions from SNP 96009 to 96609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,128 DEBUG Processing 180/740 atomic regions from SNP 53755 to 54355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,257 DEBUG Processing 511/862 atomic regions from SNP 153167 to 153767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,301 DEBUG Processing 287/710 atomic regions from SNP 85965 to 86565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,339 DEBUG Processing 322/755 atomic regions from SNP 96309 to 96909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,369 DEBUG Processing 181/740 atomic regions from SNP 54055 to 54655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,533 DEBUG Processing 512/862 atomic regions from SNP 153467 to 154067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,552 DEBUG Processing 288/710 atomic regions from SNP 86265 to 86865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,599 DEBUG Processing 323/755 atomic regions from SNP 96609 to 97209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,625 DEBUG Processing 182/740 atomic regions from SNP 54355 to 54955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,804 DEBUG Processing 289/710 atomic regions from SNP 86565 to 87165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,814 DEBUG Processing 513/862 atomic regions from SNP 153767 to 154367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,859 DEBUG Processing 324/755 atomic regions from SNP 96909 to 97509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,876 DEBUG Processing 183/740 atomic regions from SNP 54655 to 55255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,047 DEBUG Processing 290/710 atomic regions from SNP 86865 to 87465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,097 DEBUG Processing 514/862 atomic regions from SNP 154067 to 154667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,108 DEBUG Processing 325/755 atomic regions from SNP 97209 to 97809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,126 DEBUG Processing 184/740 atomic regions from SNP 54955 to 55555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,287 DEBUG Processing 291/710 atomic regions from SNP 87165 to 87765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,354 DEBUG Processing 326/755 atomic regions from SNP 97509 to 98109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,368 DEBUG Processing 515/862 atomic regions from SNP 154367 to 154967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,372 DEBUG Processing 185/740 atomic regions from SNP 55255 to 55855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,549 DEBUG Processing 292/710 atomic regions from SNP 87465 to 88065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,608 DEBUG Processing 327/755 atomic regions from SNP 97809 to 98409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,622 DEBUG Processing 186/740 atomic regions from SNP 55555 to 56155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,656 DEBUG Processing 516/862 atomic regions from SNP 154667 to 155267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,804 DEBUG Processing 293/710 atomic regions from SNP 87765 to 88365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,861 DEBUG Processing 328/755 atomic regions from SNP 98109 to 98709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,869 DEBUG Processing 187/740 atomic regions from SNP 55855 to 56455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,944 DEBUG Processing 517/862 atomic regions from SNP 154967 to 155567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,047 DEBUG Processing 294/710 atomic regions from SNP 88065 to 88665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,121 DEBUG Processing 329/755 atomic regions from SNP 98409 to 99009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,124 DEBUG Processing 188/740 atomic regions from SNP 56155 to 56755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,229 DEBUG Processing 518/862 atomic regions from SNP 155267 to 155867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,288 DEBUG Processing 295/710 atomic regions from SNP 88365 to 88965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,371 DEBUG Processing 189/740 atomic regions from SNP 56455 to 57055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,385 DEBUG Processing 330/755 atomic regions from SNP 98709 to 99309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,502 DEBUG Processing 519/862 atomic regions from SNP 155567 to 156167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,526 DEBUG Processing 296/710 atomic regions from SNP 88665 to 89265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,614 DEBUG Processing 190/740 atomic regions from SNP 56755 to 57355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,634 DEBUG Processing 331/755 atomic regions from SNP 99009 to 99609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,767 DEBUG Processing 297/710 atomic regions from SNP 88965 to 89565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,778 DEBUG Processing 520/862 atomic regions from SNP 155867 to 156467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,861 DEBUG Processing 191/740 atomic regions from SNP 57055 to 57655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,886 DEBUG Processing 332/755 atomic regions from SNP 99309 to 99909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,011 DEBUG Processing 298/710 atomic regions from SNP 89265 to 89865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,055 DEBUG Processing 521/862 atomic regions from SNP 156167 to 156767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,118 DEBUG Processing 192/740 atomic regions from SNP 57355 to 57955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,168 DEBUG Processing 333/755 atomic regions from SNP 99609 to 100209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,263 DEBUG Processing 299/710 atomic regions from SNP 89565 to 90165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,336 DEBUG Processing 522/862 atomic regions from SNP 156467 to 157067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,373 DEBUG Processing 193/740 atomic regions from SNP 57655 to 58255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,456 DEBUG Processing 334/755 atomic regions from SNP 99909 to 100509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,515 DEBUG Processing 300/710 atomic regions from SNP 89865 to 90465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,609 DEBUG Processing 523/862 atomic regions from SNP 156767 to 157367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,625 DEBUG Processing 194/740 atomic regions from SNP 57955 to 58555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,738 DEBUG Processing 335/755 atomic regions from SNP 100209 to 100809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,771 DEBUG Processing 301/710 atomic regions from SNP 90165 to 90765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,867 DEBUG Processing 195/740 atomic regions from SNP 58255 to 58855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,868 DEBUG Processing 524/862 atomic regions from SNP 157067 to 157667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,010 DEBUG Processing 336/755 atomic regions from SNP 100509 to 101109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,015 DEBUG Processing 302/710 atomic regions from SNP 90465 to 91065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,109 DEBUG Processing 196/740 atomic regions from SNP 58555 to 59155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,122 DEBUG Processing 525/862 atomic regions from SNP 157367 to 157967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,259 DEBUG Processing 303/710 atomic regions from SNP 90765 to 91365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,268 DEBUG Processing 337/755 atomic regions from SNP 100809 to 101409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,358 DEBUG Processing 197/740 atomic regions from SNP 58855 to 59455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,382 DEBUG Processing 526/862 atomic regions from SNP 157667 to 158267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,497 DEBUG Processing 304/710 atomic regions from SNP 91065 to 91665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,519 DEBUG Processing 338/755 atomic regions from SNP 101109 to 101709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,595 DEBUG Processing 198/740 atomic regions from SNP 59155 to 59755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,634 DEBUG Processing 527/862 atomic regions from SNP 157967 to 158567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,749 DEBUG Processing 305/710 atomic regions from SNP 91365 to 91965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,786 DEBUG Processing 339/755 atomic regions from SNP 101409 to 102009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,831 DEBUG Processing 199/740 atomic regions from SNP 59455 to 60055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,881 DEBUG Processing 528/862 atomic regions from SNP 158267 to 158867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,000 DEBUG Processing 306/710 atomic regions from SNP 91665 to 92265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,048 DEBUG Processing 340/755 atomic regions from SNP 101709 to 102309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,078 DEBUG Processing 200/740 atomic regions from SNP 59755 to 60355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,140 DEBUG Processing 529/862 atomic regions from SNP 158567 to 159167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,256 DEBUG Processing 307/710 atomic regions from SNP 91965 to 92565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,327 DEBUG Processing 341/755 atomic regions from SNP 102009 to 102609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,335 DEBUG Processing 201/740 atomic regions from SNP 60055 to 60655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,407 DEBUG Processing 530/862 atomic regions from SNP 158867 to 159467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,500 DEBUG Processing 308/710 atomic regions from SNP 92265 to 92865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,589 DEBUG Processing 202/740 atomic regions from SNP 60355 to 60955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,599 DEBUG Processing 342/755 atomic regions from SNP 102309 to 102909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,672 DEBUG Processing 531/862 atomic regions from SNP 159167 to 159767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,739 DEBUG Processing 309/710 atomic regions from SNP 92565 to 93165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,828 DEBUG Processing 203/740 atomic regions from SNP 60655 to 61255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,873 DEBUG Processing 343/755 atomic regions from SNP 102609 to 103209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,933 DEBUG Processing 532/862 atomic regions from SNP 159467 to 160067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,993 DEBUG Processing 310/710 atomic regions from SNP 92865 to 93465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,072 DEBUG Processing 204/740 atomic regions from SNP 60955 to 61555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,152 DEBUG Processing 344/755 atomic regions from SNP 102909 to 103509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,192 DEBUG Processing 533/862 atomic regions from SNP 159767 to 160367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,248 DEBUG Processing 311/710 atomic regions from SNP 93165 to 93765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,323 DEBUG Processing 205/740 atomic regions from SNP 61255 to 61855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,425 DEBUG Processing 345/755 atomic regions from SNP 103209 to 103809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,455 DEBUG Processing 534/862 atomic regions from SNP 160067 to 160667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,510 DEBUG Processing 312/710 atomic regions from SNP 93465 to 94065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,583 DEBUG Processing 206/740 atomic regions from SNP 61555 to 62155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,701 DEBUG Processing 346/755 atomic regions from SNP 103509 to 104109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,721 DEBUG Processing 535/862 atomic regions from SNP 160367 to 160967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,781 DEBUG Processing 313/710 atomic regions from SNP 93765 to 94365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,833 DEBUG Processing 207/740 atomic regions from SNP 61855 to 62455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,972 DEBUG Processing 347/755 atomic regions from SNP 103809 to 104409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,987 DEBUG Processing 536/862 atomic regions from SNP 160667 to 161267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,048 DEBUG Processing 314/710 atomic regions from SNP 94065 to 94665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,077 DEBUG Processing 208/740 atomic regions from SNP 62155 to 62755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,251 DEBUG Processing 537/862 atomic regions from SNP 160967 to 161567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,256 DEBUG Processing 348/755 atomic regions from SNP 104109 to 104709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,330 DEBUG Processing 315/710 atomic regions from SNP 94365 to 94965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,332 DEBUG Processing 209/740 atomic regions from SNP 62455 to 63055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,526 DEBUG Processing 538/862 atomic regions from SNP 161267 to 161867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,550 DEBUG Processing 349/755 atomic regions from SNP 104409 to 105009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,597 DEBUG Processing 210/740 atomic regions from SNP 62755 to 63355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,619 DEBUG Processing 316/710 atomic regions from SNP 94665 to 95265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,826 DEBUG Processing 539/862 atomic regions from SNP 161567 to 162167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,840 DEBUG Processing 350/755 atomic regions from SNP 104709 to 105309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,868 DEBUG Processing 211/740 atomic regions from SNP 63055 to 63655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,920 DEBUG Processing 317/710 atomic regions from SNP 94965 to 95565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,106 DEBUG Processing 540/862 atomic regions from SNP 161867 to 162467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,115 DEBUG Processing 351/755 atomic regions from SNP 105009 to 105609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,126 DEBUG Processing 212/740 atomic regions from SNP 63355 to 63955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,217 DEBUG Processing 318/710 atomic regions from SNP 95265 to 95865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,373 DEBUG Processing 541/862 atomic regions from SNP 162167 to 162767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,374 DEBUG Processing 213/740 atomic regions from SNP 63655 to 64255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,375 DEBUG Processing 352/755 atomic regions from SNP 105309 to 105909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,504 DEBUG Processing 319/710 atomic regions from SNP 95565 to 96165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,625 DEBUG Processing 214/740 atomic regions from SNP 63955 to 64555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,639 DEBUG Processing 542/862 atomic regions from SNP 162467 to 163067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,651 DEBUG Processing 353/755 atomic regions from SNP 105609 to 106209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,788 DEBUG Processing 320/710 atomic regions from SNP 95865 to 96465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,880 DEBUG Processing 215/740 atomic regions from SNP 64255 to 64855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,907 DEBUG Processing 543/862 atomic regions from SNP 162767 to 163367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,926 DEBUG Processing 354/755 atomic regions from SNP 105909 to 106509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,056 DEBUG Processing 321/710 atomic regions from SNP 96165 to 96765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,135 DEBUG Processing 216/740 atomic regions from SNP 64555 to 65155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,173 DEBUG Processing 544/862 atomic regions from SNP 163067 to 163667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,195 DEBUG Processing 355/755 atomic regions from SNP 106209 to 106809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,325 DEBUG Processing 322/710 atomic regions from SNP 96465 to 97065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,387 DEBUG Processing 217/740 atomic regions from SNP 64855 to 65455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,434 DEBUG Processing 545/862 atomic regions from SNP 163367 to 163967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,467 DEBUG Processing 356/755 atomic regions from SNP 106509 to 107109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,596 DEBUG Processing 323/710 atomic regions from SNP 96765 to 97365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,639 DEBUG Processing 218/740 atomic regions from SNP 65155 to 65755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,697 DEBUG Processing 546/862 atomic regions from SNP 163667 to 164267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,720 DEBUG Processing 357/755 atomic regions from SNP 106809 to 107409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,871 DEBUG Processing 324/710 atomic regions from SNP 97065 to 97665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,889 DEBUG Processing 219/740 atomic regions from SNP 65455 to 66055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,965 DEBUG Processing 547/862 atomic regions from SNP 163967 to 164567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,978 DEBUG Processing 358/755 atomic regions from SNP 107109 to 107709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,131 DEBUG Processing 220/740 atomic regions from SNP 65755 to 66355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,136 DEBUG Processing 325/710 atomic regions from SNP 97365 to 97965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,238 DEBUG Processing 548/862 atomic regions from SNP 164267 to 164867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,240 DEBUG Processing 359/755 atomic regions from SNP 107409 to 108009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,378 DEBUG Processing 221/740 atomic regions from SNP 66055 to 66655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,393 DEBUG Processing 326/710 atomic regions from SNP 97665 to 98265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,498 DEBUG Processing 360/755 atomic regions from SNP 107709 to 108309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,508 DEBUG Processing 549/862 atomic regions from SNP 164567 to 165167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,626 DEBUG Processing 222/740 atomic regions from SNP 66355 to 66955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,653 DEBUG Processing 327/710 atomic regions from SNP 97965 to 98565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,757 DEBUG Processing 361/755 atomic regions from SNP 108009 to 108609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,778 DEBUG Processing 550/862 atomic regions from SNP 164867 to 165467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,875 DEBUG Processing 223/740 atomic regions from SNP 66655 to 67255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,922 DEBUG Processing 328/710 atomic regions from SNP 98265 to 98865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,010 DEBUG Processing 362/755 atomic regions from SNP 108309 to 108909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,037 DEBUG Processing 551/862 atomic regions from SNP 165167 to 165767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,121 DEBUG Processing 224/740 atomic regions from SNP 66955 to 67555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,185 DEBUG Processing 329/710 atomic regions from SNP 98565 to 99165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,264 DEBUG Processing 363/755 atomic regions from SNP 108609 to 109209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,296 DEBUG Processing 552/862 atomic regions from SNP 165467 to 166067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,353 DEBUG Processing 225/740 atomic regions from SNP 67255 to 67855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,439 DEBUG Processing 330/710 atomic regions from SNP 98865 to 99465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,506 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:49:38,507 DEBUG chr14: Signal quantile: 0.995. signal threshold: 10. Best RMSEA: 0.028 2025-01-31 09:49:38,516 DEBUG Processing 364/755 atomic regions from SNP 108909 to 109509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,550 DEBUG Processing 553/862 atomic regions from SNP 165767 to 166367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,581 DEBUG Processing 226/740 atomic regions from SNP 67555 to 68155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,696 DEBUG Processing 331/710 atomic regions from SNP 99165 to 99765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,769 DEBUG Processing 365/755 atomic regions from SNP 109209 to 109809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,814 DEBUG Processing 554/862 atomic regions from SNP 166067 to 166667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,821 DEBUG Processing 227/740 atomic regions from SNP 67855 to 68455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,944 DEBUG Processing 332/710 atomic regions from SNP 99465 to 100065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,018 DEBUG Processing 366/755 atomic regions from SNP 109509 to 110109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,064 DEBUG Processing 228/740 atomic regions from SNP 68155 to 68755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,076 DEBUG Processing 555/862 atomic regions from SNP 166367 to 166967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,192 DEBUG Processing 333/710 atomic regions from SNP 99765 to 100365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,254 DEBUG Processing 367/755 atomic regions from SNP 109809 to 110409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,296 DEBUG Processing 229/740 atomic regions from SNP 68455 to 69055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,323 DEBUG Processing 556/862 atomic regions from SNP 166667 to 167267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,434 DEBUG Processing 334/710 atomic regions from SNP 100065 to 100665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,490 DEBUG Processing 368/755 atomic regions from SNP 110109 to 110709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,527 DEBUG Processing 230/740 atomic regions from SNP 68755 to 69355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,568 DEBUG Processing 557/862 atomic regions from SNP 166967 to 167567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,675 DEBUG Processing 335/710 atomic regions from SNP 100365 to 100965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,727 DEBUG Processing 369/755 atomic regions from SNP 110409 to 111009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,759 DEBUG Processing 231/740 atomic regions from SNP 69055 to 69655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,813 DEBUG Processing 558/862 atomic regions from SNP 167267 to 167867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,919 DEBUG Processing 336/710 atomic regions from SNP 100665 to 101265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,966 DEBUG Processing 370/755 atomic regions from SNP 110709 to 111309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,994 DEBUG Processing 232/740 atomic regions from SNP 69355 to 69955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,062 DEBUG Processing 559/862 atomic regions from SNP 167567 to 168167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,157 DEBUG Processing 337/710 atomic regions from SNP 100965 to 101565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,205 DEBUG Processing 371/755 atomic regions from SNP 111009 to 111609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,234 DEBUG Processing 233/740 atomic regions from SNP 69655 to 70255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,311 DEBUG Processing 560/862 atomic regions from SNP 167867 to 168467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,387 DEBUG Processing 338/710 atomic regions from SNP 101265 to 101865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,444 DEBUG Processing 372/755 atomic regions from SNP 111309 to 111909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,470 DEBUG Processing 234/740 atomic regions from SNP 69955 to 70555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,560 DEBUG Processing 561/862 atomic regions from SNP 168167 to 168767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,617 DEBUG Processing 339/710 atomic regions from SNP 101565 to 102165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,676 DEBUG Processing 373/755 atomic regions from SNP 111609 to 112209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,701 DEBUG Processing 235/740 atomic regions from SNP 70255 to 70855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,742 DEBUG chr14 total SNP count: 202172 2025-01-31 09:49:40,742 DEBUG chr14 length: 124902244 2025-01-31 09:49:40,742 DEBUG ----------------------------------------- 2025-01-31 09:49:40,742 INFO Processing SNPs in chr14 2025-01-31 09:49:40,808 DEBUG Processing 562/862 atomic regions from SNP 168467 to 169067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,856 DEBUG Processing 340/710 atomic regions from SNP 101865 to 102465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,909 DEBUG Processing 374/755 atomic regions from SNP 111909 to 112509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,935 DEBUG Processing 236/740 atomic regions from SNP 70555 to 71155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,053 DEBUG Processing 563/862 atomic regions from SNP 168767 to 169367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,069 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 182), (182, 202172)] 2025-01-31 09:49:41,098 DEBUG Processing 341/710 atomic regions from SNP 102165 to 102765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,150 DEBUG Processing 375/755 atomic regions from SNP 112209 to 112809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,160 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:41,173 DEBUG Processing 237/740 atomic regions from SNP 70855 to 71455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,182 DEBUG Segmenting atomic regions: 2025-01-31 09:49:41,274 DEBUG Processing 1/1 atomic regions from SNP 0 to 181 for chr14 (subchromosome 1 of 2). 2025-01-31 09:49:41,284 DEBUG Unique SNPs positions in subchromosome 1: 182 2025-01-31 09:49:41,285 DEBUG Subchromosome time: 0.12528755399398506, subchromosome SNPs: 182 2025-01-31 09:49:41,295 DEBUG Processing 564/862 atomic regions from SNP 169067 to 169667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,337 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:41,342 DEBUG Processing 342/710 atomic regions from SNP 102465 to 103065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,395 DEBUG Processing 376/755 atomic regions from SNP 112509 to 113109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,418 DEBUG Processing 238/740 atomic regions from SNP 71155 to 71755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,542 DEBUG Processing 565/862 atomic regions from SNP 169367 to 169967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,583 DEBUG Processing 343/710 atomic regions from SNP 102765 to 103365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,638 DEBUG Processing 377/755 atomic regions from SNP 112809 to 113409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,661 DEBUG Processing 239/740 atomic regions from SNP 71455 to 72055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,790 DEBUG Processing 566/862 atomic regions from SNP 169667 to 170267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,826 DEBUG Processing 344/710 atomic regions from SNP 103065 to 103665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,880 DEBUG Processing 378/755 atomic regions from SNP 113109 to 113709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,900 DEBUG Processing 240/740 atomic regions from SNP 71755 to 72355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,039 DEBUG Processing 567/862 atomic regions from SNP 169967 to 170567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,076 DEBUG Processing 345/710 atomic regions from SNP 103365 to 103965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,126 DEBUG Processing 379/755 atomic regions from SNP 113409 to 114009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,140 DEBUG Processing 241/740 atomic regions from SNP 72055 to 72655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,295 DEBUG Processing 568/862 atomic regions from SNP 170267 to 170867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,337 DEBUG Processing 346/710 atomic regions from SNP 103665 to 104265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,374 DEBUG Processing 380/755 atomic regions from SNP 113709 to 114309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,384 DEBUG Processing 242/740 atomic regions from SNP 72355 to 72955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,547 DEBUG Processing 569/862 atomic regions from SNP 170567 to 171167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,589 DEBUG Processing 347/710 atomic regions from SNP 103965 to 104565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,622 DEBUG Processing 381/755 atomic regions from SNP 114009 to 114609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,626 DEBUG Processing 243/740 atomic regions from SNP 72655 to 73255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,798 DEBUG Processing 570/862 atomic regions from SNP 170867 to 171467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,834 DEBUG Processing 348/710 atomic regions from SNP 104265 to 104865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,872 DEBUG Processing 382/755 atomic regions from SNP 114309 to 114909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,872 DEBUG Processing 244/740 atomic regions from SNP 72955 to 73555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,046 DEBUG Processing 571/862 atomic regions from SNP 171167 to 171767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,084 DEBUG Processing 349/710 atomic regions from SNP 104565 to 105165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,116 DEBUG Processing 245/740 atomic regions from SNP 73255 to 73855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,117 DEBUG Processing 383/755 atomic regions from SNP 114609 to 115209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,295 DEBUG Processing 572/862 atomic regions from SNP 171467 to 172067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,331 DEBUG Processing 350/710 atomic regions from SNP 104865 to 105465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,353 DEBUG Processing 384/755 atomic regions from SNP 114909 to 115509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,365 DEBUG Processing 246/740 atomic regions from SNP 73555 to 74155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,544 DEBUG Processing 573/862 atomic regions from SNP 171767 to 172367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,574 DEBUG Processing 351/710 atomic regions from SNP 105165 to 105765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,591 DEBUG Processing 385/755 atomic regions from SNP 115209 to 115809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,606 DEBUG Processing 247/740 atomic regions from SNP 73855 to 74455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,791 DEBUG Processing 574/862 atomic regions from SNP 172067 to 172667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,818 DEBUG Processing 352/710 atomic regions from SNP 105465 to 106065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,831 DEBUG Processing 386/755 atomic regions from SNP 115509 to 116109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,863 DEBUG Processing 248/740 atomic regions from SNP 74155 to 74755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,038 DEBUG Processing 575/862 atomic regions from SNP 172367 to 172967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,064 DEBUG Processing 353/710 atomic regions from SNP 105765 to 106365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,072 DEBUG Processing 387/755 atomic regions from SNP 115809 to 116409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,118 DEBUG Processing 249/740 atomic regions from SNP 74455 to 75055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,286 DEBUG Processing 576/862 atomic regions from SNP 172667 to 173267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,312 DEBUG Processing 354/710 atomic regions from SNP 106065 to 106665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,315 DEBUG Processing 388/755 atomic regions from SNP 116109 to 116709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,359 DEBUG Processing 250/740 atomic regions from SNP 74755 to 75355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,533 DEBUG Processing 577/862 atomic regions from SNP 172967 to 173567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,558 DEBUG Processing 389/755 atomic regions from SNP 116409 to 117009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,558 DEBUG Processing 355/710 atomic regions from SNP 106365 to 106965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,601 DEBUG Processing 251/740 atomic regions from SNP 75055 to 75655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,773 DEBUG Processing 578/862 atomic regions from SNP 173267 to 173867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,796 DEBUG Processing 390/755 atomic regions from SNP 116709 to 117309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,800 DEBUG Processing 356/710 atomic regions from SNP 106665 to 107265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,840 DEBUG Processing 252/740 atomic regions from SNP 75355 to 75955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,014 DEBUG Processing 579/862 atomic regions from SNP 173567 to 174167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,029 DEBUG Processing 391/755 atomic regions from SNP 117009 to 117609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,045 DEBUG Processing 357/710 atomic regions from SNP 106965 to 107565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,081 DEBUG Processing 253/740 atomic regions from SNP 75655 to 76255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,255 DEBUG Processing 580/862 atomic regions from SNP 173867 to 174467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,264 DEBUG Processing 392/755 atomic regions from SNP 117309 to 117909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,291 DEBUG Processing 358/710 atomic regions from SNP 107265 to 107865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,322 DEBUG Processing 254/740 atomic regions from SNP 75955 to 76555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,504 DEBUG Processing 581/862 atomic regions from SNP 174167 to 174767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,514 DEBUG Processing 393/755 atomic regions from SNP 117609 to 118209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,536 DEBUG Processing 359/710 atomic regions from SNP 107565 to 108165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,564 DEBUG Processing 255/740 atomic regions from SNP 76255 to 76855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,752 DEBUG Processing 582/862 atomic regions from SNP 174467 to 175067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,764 DEBUG Processing 394/755 atomic regions from SNP 117909 to 118509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,785 DEBUG Processing 360/710 atomic regions from SNP 107865 to 108465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,810 DEBUG Processing 256/740 atomic regions from SNP 76555 to 77155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,997 DEBUG Processing 583/862 atomic regions from SNP 174767 to 175367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,021 DEBUG Processing 395/755 atomic regions from SNP 118209 to 118809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,034 DEBUG Processing 361/710 atomic regions from SNP 108165 to 108765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,057 DEBUG Processing 257/740 atomic regions from SNP 76855 to 77455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,236 DEBUG Processing 584/862 atomic regions from SNP 175067 to 175667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,284 DEBUG Processing 396/755 atomic regions from SNP 118509 to 119109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,288 DEBUG Processing 362/710 atomic regions from SNP 108465 to 109065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,305 DEBUG Processing 258/740 atomic regions from SNP 77155 to 77755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,480 DEBUG Processing 585/862 atomic regions from SNP 175367 to 175967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,534 DEBUG Processing 397/755 atomic regions from SNP 118809 to 119409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,544 DEBUG Processing 363/710 atomic regions from SNP 108765 to 109365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,549 DEBUG Processing 259/740 atomic regions from SNP 77455 to 78055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,726 DEBUG Processing 586/862 atomic regions from SNP 175667 to 176267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,782 DEBUG Processing 398/755 atomic regions from SNP 119109 to 119709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,794 DEBUG Processing 260/740 atomic regions from SNP 77755 to 78355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,801 DEBUG Processing 364/710 atomic regions from SNP 109065 to 109665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,973 DEBUG Processing 587/862 atomic regions from SNP 175967 to 176567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,034 DEBUG Processing 399/755 atomic regions from SNP 119409 to 120009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,039 DEBUG Processing 261/740 atomic regions from SNP 78055 to 78655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,055 DEBUG Processing 365/710 atomic regions from SNP 109365 to 109965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,226 DEBUG Processing 588/862 atomic regions from SNP 176267 to 176867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,283 DEBUG Processing 262/740 atomic regions from SNP 78355 to 78955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,285 DEBUG Processing 400/755 atomic regions from SNP 119709 to 120309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,306 DEBUG Processing 366/710 atomic regions from SNP 109665 to 110265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,478 DEBUG Processing 589/862 atomic regions from SNP 176567 to 177167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,528 DEBUG Processing 263/740 atomic regions from SNP 78655 to 79255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,534 DEBUG Processing 401/755 atomic regions from SNP 120009 to 120609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,558 DEBUG Processing 367/710 atomic regions from SNP 109965 to 110565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,733 DEBUG Processing 590/862 atomic regions from SNP 176867 to 177467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,768 DEBUG Processing 264/740 atomic regions from SNP 78955 to 79555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,781 DEBUG Processing 402/755 atomic regions from SNP 120309 to 120909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,804 DEBUG Processing 368/710 atomic regions from SNP 110265 to 110865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,995 DEBUG Processing 591/862 atomic regions from SNP 177167 to 177767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,013 DEBUG Processing 265/740 atomic regions from SNP 79255 to 79855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,037 DEBUG Processing 403/755 atomic regions from SNP 120609 to 121209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,051 DEBUG Processing 369/710 atomic regions from SNP 110565 to 111165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,244 DEBUG Processing 592/862 atomic regions from SNP 177467 to 178067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,246 DEBUG Processing 266/740 atomic regions from SNP 79555 to 80155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,276 DEBUG Processing 404/755 atomic regions from SNP 120909 to 121509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,290 DEBUG Processing 370/710 atomic regions from SNP 110865 to 111465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,483 DEBUG Processing 267/740 atomic regions from SNP 79855 to 80455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,496 DEBUG Processing 593/862 atomic regions from SNP 177767 to 178367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,522 DEBUG Processing 405/755 atomic regions from SNP 121209 to 121809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,537 DEBUG Processing 371/710 atomic regions from SNP 111165 to 111765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,721 DEBUG Processing 268/740 atomic regions from SNP 80155 to 80755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,746 DEBUG Processing 594/862 atomic regions from SNP 178067 to 178667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,765 DEBUG Processing 406/755 atomic regions from SNP 121509 to 122109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,784 DEBUG Processing 372/710 atomic regions from SNP 111465 to 112065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,951 DEBUG Processing 269/740 atomic regions from SNP 80455 to 81055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,994 DEBUG Processing 595/862 atomic regions from SNP 178367 to 178967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,010 DEBUG Processing 407/755 atomic regions from SNP 121809 to 122409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,035 DEBUG Processing 373/710 atomic regions from SNP 111765 to 112365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,182 DEBUG Processing 270/740 atomic regions from SNP 80755 to 81355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,248 DEBUG Processing 596/862 atomic regions from SNP 178667 to 179267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,257 DEBUG Processing 408/755 atomic regions from SNP 122109 to 122709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,289 DEBUG Processing 374/710 atomic regions from SNP 112065 to 112665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,411 DEBUG Processing 271/740 atomic regions from SNP 81055 to 81655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,498 DEBUG Processing 409/755 atomic regions from SNP 122409 to 123009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,502 DEBUG Processing 597/862 atomic regions from SNP 178967 to 179567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,540 DEBUG Processing 375/710 atomic regions from SNP 112365 to 112965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,645 DEBUG Processing 272/740 atomic regions from SNP 81355 to 81955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,739 DEBUG Processing 410/755 atomic regions from SNP 122709 to 123309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,754 DEBUG Processing 598/862 atomic regions from SNP 179267 to 179867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,782 DEBUG Processing 376/710 atomic regions from SNP 112665 to 113265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,876 DEBUG Processing 273/740 atomic regions from SNP 81655 to 82255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,974 DEBUG Processing 411/755 atomic regions from SNP 123009 to 123609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,001 DEBUG Processing 599/862 atomic regions from SNP 179567 to 180167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,030 DEBUG Processing 377/710 atomic regions from SNP 112965 to 113565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,106 DEBUG Processing 274/740 atomic regions from SNP 81955 to 82555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,208 DEBUG Processing 412/755 atomic regions from SNP 123309 to 123909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,249 DEBUG Processing 600/862 atomic regions from SNP 179867 to 180467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,271 DEBUG Processing 378/710 atomic regions from SNP 113265 to 113865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,340 DEBUG Processing 275/740 atomic regions from SNP 82255 to 82855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,438 DEBUG Processing 413/755 atomic regions from SNP 123609 to 124209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,498 DEBUG Processing 601/862 atomic regions from SNP 180167 to 180767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,509 DEBUG Processing 379/710 atomic regions from SNP 113565 to 114165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,574 DEBUG Processing 276/740 atomic regions from SNP 82555 to 83155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,666 DEBUG Processing 414/755 atomic regions from SNP 123909 to 124509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,747 DEBUG Processing 602/862 atomic regions from SNP 180467 to 181067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,747 DEBUG Processing 380/710 atomic regions from SNP 113865 to 114465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,807 DEBUG Processing 277/740 atomic regions from SNP 82855 to 83455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,888 DEBUG Processing 415/755 atomic regions from SNP 124209 to 124809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,988 DEBUG Processing 381/710 atomic regions from SNP 114165 to 114765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,000 DEBUG Processing 603/862 atomic regions from SNP 180767 to 181367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,044 DEBUG Processing 278/740 atomic regions from SNP 83155 to 83755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,110 DEBUG Processing 416/755 atomic regions from SNP 124509 to 125109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,237 DEBUG Processing 382/710 atomic regions from SNP 114465 to 115065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,253 DEBUG Processing 604/862 atomic regions from SNP 181067 to 181667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,282 DEBUG Processing 279/740 atomic regions from SNP 83455 to 84055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,344 DEBUG Processing 417/755 atomic regions from SNP 124809 to 125409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,481 DEBUG Processing 383/710 atomic regions from SNP 114765 to 115365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,501 DEBUG Processing 605/862 atomic regions from SNP 181367 to 181967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,523 DEBUG Processing 280/740 atomic regions from SNP 83755 to 84355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,579 DEBUG Processing 418/755 atomic regions from SNP 125109 to 125709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,712 DEBUG Processing 384/710 atomic regions from SNP 115065 to 115665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,742 DEBUG Processing 606/862 atomic regions from SNP 181667 to 182267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,755 DEBUG Processing 281/740 atomic regions from SNP 84055 to 84655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,809 DEBUG Processing 419/755 atomic regions from SNP 125409 to 126009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,944 DEBUG Processing 385/710 atomic regions from SNP 115365 to 115965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,984 DEBUG Processing 607/862 atomic regions from SNP 181967 to 182567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,985 DEBUG Processing 282/740 atomic regions from SNP 84355 to 84955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,039 DEBUG Processing 420/755 atomic regions from SNP 125709 to 126309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,176 DEBUG Processing 386/710 atomic regions from SNP 115665 to 116265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,220 DEBUG Processing 283/740 atomic regions from SNP 84655 to 85255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,230 DEBUG Processing 608/862 atomic regions from SNP 182267 to 182867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,280 DEBUG Processing 421/755 atomic regions from SNP 126009 to 126609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,416 DEBUG Processing 387/710 atomic regions from SNP 115965 to 116565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,459 DEBUG Processing 284/740 atomic regions from SNP 84955 to 85555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,484 DEBUG Processing 609/862 atomic regions from SNP 182567 to 183167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,523 DEBUG Processing 422/755 atomic regions from SNP 126309 to 126909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,646 DEBUG Processing 388/710 atomic regions from SNP 116265 to 116865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,693 DEBUG Processing 285/740 atomic regions from SNP 85255 to 85855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,735 DEBUG Processing 610/862 atomic regions from SNP 182867 to 183467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,768 DEBUG Processing 423/755 atomic regions from SNP 126609 to 127209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,875 DEBUG Processing 389/710 atomic regions from SNP 116565 to 117165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,923 DEBUG Processing 286/740 atomic regions from SNP 85555 to 86155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,985 DEBUG Processing 611/862 atomic regions from SNP 183167 to 183767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,011 DEBUG Processing 424/755 atomic regions from SNP 126909 to 127509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,102 DEBUG Processing 390/710 atomic regions from SNP 116865 to 117465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,147 DEBUG Processing 287/740 atomic regions from SNP 85855 to 86455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,230 DEBUG Processing 612/862 atomic regions from SNP 183467 to 184067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,245 DEBUG Processing 425/755 atomic regions from SNP 127209 to 127809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,329 DEBUG Processing 391/710 atomic regions from SNP 117165 to 117765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,371 DEBUG Processing 288/740 atomic regions from SNP 86155 to 86755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,468 DEBUG Processing 613/862 atomic regions from SNP 183767 to 184367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,474 DEBUG Processing 426/755 atomic regions from SNP 127509 to 128109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,562 DEBUG Processing 392/710 atomic regions from SNP 117465 to 118065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,591 DEBUG Processing 289/740 atomic regions from SNP 86455 to 87055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,707 DEBUG Processing 614/862 atomic regions from SNP 184067 to 184667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,712 DEBUG Processing 427/755 atomic regions from SNP 127809 to 128409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,793 DEBUG Processing 393/710 atomic regions from SNP 117765 to 118365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,810 DEBUG Processing 290/740 atomic regions from SNP 86755 to 87355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,954 DEBUG Processing 615/862 atomic regions from SNP 184367 to 184967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,971 DEBUG Processing 428/755 atomic regions from SNP 128109 to 128709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,031 DEBUG Processing 394/710 atomic regions from SNP 118065 to 118665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,037 DEBUG Processing 291/740 atomic regions from SNP 87055 to 87655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,198 DEBUG Processing 616/862 atomic regions from SNP 184667 to 185267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,236 DEBUG Processing 429/755 atomic regions from SNP 128409 to 129009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,268 DEBUG Processing 292/740 atomic regions from SNP 87355 to 87955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,268 DEBUG Processing 395/710 atomic regions from SNP 118365 to 118965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,446 DEBUG Processing 617/862 atomic regions from SNP 184967 to 185567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,506 DEBUG Processing 293/740 atomic regions from SNP 87655 to 88255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,507 DEBUG Processing 430/755 atomic regions from SNP 128709 to 129309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,516 DEBUG Processing 396/710 atomic regions from SNP 118665 to 119265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,692 DEBUG Processing 618/862 atomic regions from SNP 185267 to 185867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,747 DEBUG Processing 294/740 atomic regions from SNP 87955 to 88555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,760 DEBUG Processing 431/755 atomic regions from SNP 129009 to 129609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,771 DEBUG Processing 397/710 atomic regions from SNP 118965 to 119565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,926 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:49:54,936 DEBUG Processing 619/862 atomic regions from SNP 185567 to 186167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,986 DEBUG Processing 295/740 atomic regions from SNP 88255 to 88855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,010 DEBUG Processing 432/755 atomic regions from SNP 129309 to 129909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,021 DEBUG Processing 398/710 atomic regions from SNP 119265 to 119865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,183 DEBUG Processing 620/862 atomic regions from SNP 185867 to 186467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,226 DEBUG Processing 296/740 atomic regions from SNP 88555 to 89155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,274 DEBUG Processing 433/755 atomic regions from SNP 129609 to 130209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,276 DEBUG Processing 399/710 atomic regions from SNP 119565 to 120165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,430 DEBUG Processing 621/862 atomic regions from SNP 186167 to 186767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,461 DEBUG Processing 297/740 atomic regions from SNP 88855 to 89455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,525 DEBUG Processing 400/710 atomic regions from SNP 119865 to 120465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,538 DEBUG Processing 434/755 atomic regions from SNP 129909 to 130509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,675 DEBUG Processing 622/862 atomic regions from SNP 186467 to 187067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,698 DEBUG Processing 298/740 atomic regions from SNP 89155 to 89755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,773 DEBUG Processing 401/710 atomic regions from SNP 120165 to 120765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,791 DEBUG Processing 435/755 atomic regions from SNP 130209 to 130809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,924 DEBUG Processing 623/862 atomic regions from SNP 186767 to 187367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,940 DEBUG Processing 299/740 atomic regions from SNP 89455 to 90055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,021 DEBUG Processing 402/710 atomic regions from SNP 120465 to 121065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,034 DEBUG Processing 436/755 atomic regions from SNP 130509 to 131109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,180 DEBUG Processing 624/862 atomic regions from SNP 187067 to 187667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,182 DEBUG Processing 300/740 atomic regions from SNP 89755 to 90355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,265 DEBUG Processing 403/710 atomic regions from SNP 120765 to 121365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,290 DEBUG Processing 437/755 atomic regions from SNP 130809 to 131409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,422 DEBUG Processing 301/740 atomic regions from SNP 90055 to 90655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,435 DEBUG Processing 625/862 atomic regions from SNP 187367 to 187967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,516 DEBUG Processing 404/710 atomic regions from SNP 121065 to 121665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,558 DEBUG Processing 438/755 atomic regions from SNP 131109 to 131709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,662 DEBUG Processing 302/740 atomic regions from SNP 90355 to 90955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,692 DEBUG Processing 626/862 atomic regions from SNP 187667 to 188267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,769 DEBUG Processing 405/710 atomic regions from SNP 121365 to 121965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,817 DEBUG Processing 439/755 atomic regions from SNP 131409 to 132009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,900 DEBUG Processing 303/740 atomic regions from SNP 90655 to 91255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,963 DEBUG Processing 627/862 atomic regions from SNP 187967 to 188567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,022 DEBUG Processing 406/710 atomic regions from SNP 121665 to 122265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,080 DEBUG Processing 440/755 atomic regions from SNP 131709 to 132309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,140 DEBUG Processing 304/740 atomic regions from SNP 90955 to 91555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,229 DEBUG Processing 628/862 atomic regions from SNP 188267 to 188867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,269 DEBUG Processing 407/710 atomic regions from SNP 121965 to 122565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,341 DEBUG Processing 441/755 atomic regions from SNP 132009 to 132609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,372 DEBUG Processing 305/740 atomic regions from SNP 91255 to 91855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,488 DEBUG Processing 629/862 atomic regions from SNP 188567 to 189167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,512 DEBUG Processing 408/710 atomic regions from SNP 122265 to 122865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,590 DEBUG Processing 442/755 atomic regions from SNP 132309 to 132909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,611 DEBUG Processing 306/740 atomic regions from SNP 91555 to 92155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,751 DEBUG Processing 630/862 atomic regions from SNP 188867 to 189467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,762 DEBUG Processing 409/710 atomic regions from SNP 122565 to 123165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,848 DEBUG Processing 307/740 atomic regions from SNP 91855 to 92455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,861 DEBUG Processing 443/755 atomic regions from SNP 132609 to 133209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,018 DEBUG Processing 631/862 atomic regions from SNP 189167 to 189767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,020 DEBUG Processing 410/710 atomic regions from SNP 122865 to 123465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,091 DEBUG Processing 308/740 atomic regions from SNP 92155 to 92755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,136 DEBUG Processing 444/755 atomic regions from SNP 132909 to 133509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,269 DEBUG Processing 411/710 atomic regions from SNP 123165 to 123765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,279 DEBUG Processing 632/862 atomic regions from SNP 189467 to 190067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,328 DEBUG Processing 309/740 atomic regions from SNP 92455 to 93055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,411 DEBUG Processing 445/755 atomic regions from SNP 133209 to 133809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,521 DEBUG Processing 412/710 atomic regions from SNP 123465 to 124065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,542 DEBUG Processing 633/862 atomic regions from SNP 189767 to 190367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,570 DEBUG Processing 310/740 atomic regions from SNP 92755 to 93355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,683 DEBUG Processing 446/755 atomic regions from SNP 133509 to 134109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,765 DEBUG Processing 413/710 atomic regions from SNP 123765 to 124365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,795 DEBUG Processing 634/862 atomic regions from SNP 190067 to 190667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,804 DEBUG Processing 311/740 atomic regions from SNP 93055 to 93655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,926 DEBUG Processing 447/755 atomic regions from SNP 133809 to 134409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,998 DEBUG Processing 414/710 atomic regions from SNP 124065 to 124665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,030 DEBUG Processing 312/740 atomic regions from SNP 93355 to 93955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,039 DEBUG Processing 635/862 atomic regions from SNP 190367 to 190967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,168 DEBUG Processing 448/755 atomic regions from SNP 134109 to 134709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,237 DEBUG Processing 415/710 atomic regions from SNP 124365 to 124965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,267 DEBUG Processing 313/740 atomic regions from SNP 93655 to 94255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,290 DEBUG Processing 636/862 atomic regions from SNP 190667 to 191267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,403 DEBUG Processing 449/755 atomic regions from SNP 134409 to 135009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,480 DEBUG Processing 416/710 atomic regions from SNP 124665 to 125265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,505 DEBUG Processing 314/740 atomic regions from SNP 93955 to 94555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,547 DEBUG Processing 637/862 atomic regions from SNP 190967 to 191567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,644 DEBUG Processing 450/755 atomic regions from SNP 134709 to 135309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,722 DEBUG Processing 417/710 atomic regions from SNP 124965 to 125565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,741 DEBUG Processing 315/740 atomic regions from SNP 94255 to 94855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,806 DEBUG Processing 638/862 atomic regions from SNP 191267 to 191867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,887 DEBUG Processing 451/755 atomic regions from SNP 135009 to 135609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,964 DEBUG Processing 418/710 atomic regions from SNP 125265 to 125865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,981 DEBUG Processing 316/740 atomic regions from SNP 94555 to 95155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,059 DEBUG Processing 639/862 atomic regions from SNP 191567 to 192167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,148 DEBUG Processing 452/755 atomic regions from SNP 135309 to 135909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,209 DEBUG Processing 419/710 atomic regions from SNP 125565 to 126165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,228 DEBUG Processing 317/740 atomic regions from SNP 94855 to 95455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,311 DEBUG Processing 640/862 atomic regions from SNP 191867 to 192467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,428 DEBUG Processing 453/755 atomic regions from SNP 135609 to 136209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,468 DEBUG Processing 420/710 atomic regions from SNP 125865 to 126465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,471 DEBUG Processing 318/740 atomic regions from SNP 95155 to 95755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,566 DEBUG Processing 641/862 atomic regions from SNP 192167 to 192767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,710 DEBUG Processing 454/755 atomic regions from SNP 135909 to 136509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,719 DEBUG Processing 319/740 atomic regions from SNP 95455 to 96055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,725 DEBUG Processing 421/710 atomic regions from SNP 126165 to 126765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,823 DEBUG Processing 642/862 atomic regions from SNP 192467 to 193067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,084 DEBUG Processing 422/710 atomic regions from SNP 126465 to 127065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,090 DEBUG Processing 320/740 atomic regions from SNP 95755 to 96355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,098 DEBUG Processing 455/755 atomic regions from SNP 136209 to 136809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,169 DEBUG Processing 643/862 atomic regions from SNP 192767 to 193367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,323 DEBUG Processing 423/710 atomic regions from SNP 126765 to 127365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,328 DEBUG Processing 321/740 atomic regions from SNP 96055 to 96655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,373 DEBUG Processing 456/755 atomic regions from SNP 136509 to 137109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,423 DEBUG Processing 644/862 atomic regions from SNP 193067 to 193667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,567 DEBUG Processing 424/710 atomic regions from SNP 127065 to 127665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,569 DEBUG Processing 322/740 atomic regions from SNP 96355 to 96955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,662 DEBUG Processing 457/755 atomic regions from SNP 136809 to 137409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,685 DEBUG Processing 645/862 atomic regions from SNP 193367 to 193967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,804 DEBUG Processing 323/740 atomic regions from SNP 96655 to 97255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,834 DEBUG Processing 425/710 atomic regions from SNP 127365 to 127965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,936 DEBUG Processing 646/862 atomic regions from SNP 193667 to 194267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,942 DEBUG Processing 458/755 atomic regions from SNP 137109 to 137709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,037 DEBUG Processing 324/740 atomic regions from SNP 96955 to 97555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,083 DEBUG Processing 426/710 atomic regions from SNP 127665 to 128265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,205 DEBUG Processing 647/862 atomic regions from SNP 193967 to 194567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,222 DEBUG Processing 459/755 atomic regions from SNP 137409 to 138009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,268 DEBUG Processing 325/740 atomic regions from SNP 97255 to 97855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,336 DEBUG Processing 427/710 atomic regions from SNP 127965 to 128565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,489 DEBUG Processing 648/862 atomic regions from SNP 194267 to 194867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,503 DEBUG Processing 326/740 atomic regions from SNP 97555 to 98155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,505 DEBUG Processing 460/755 atomic regions from SNP 137709 to 138309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,578 DEBUG Processing 428/710 atomic regions from SNP 128265 to 128865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,750 DEBUG Processing 327/740 atomic regions from SNP 97855 to 98455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,769 DEBUG Processing 649/862 atomic regions from SNP 194567 to 195167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,793 DEBUG Processing 461/755 atomic regions from SNP 138009 to 138609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,842 DEBUG Processing 429/710 atomic regions from SNP 128565 to 129165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,997 DEBUG Processing 328/740 atomic regions from SNP 98155 to 98755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,061 DEBUG Processing 650/862 atomic regions from SNP 194867 to 195467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,078 DEBUG Processing 462/755 atomic regions from SNP 138309 to 138909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,100 DEBUG Processing 430/710 atomic regions from SNP 128865 to 129465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,240 DEBUG Processing 329/740 atomic regions from SNP 98455 to 99055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,349 DEBUG Processing 651/862 atomic regions from SNP 195167 to 195767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,357 DEBUG Processing 431/710 atomic regions from SNP 129165 to 129765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,365 DEBUG Processing 463/755 atomic regions from SNP 138609 to 139209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,493 DEBUG Processing 330/740 atomic regions from SNP 98755 to 99355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,624 DEBUG Processing 432/710 atomic regions from SNP 129465 to 130065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,636 DEBUG Processing 652/862 atomic regions from SNP 195467 to 196067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,654 DEBUG Processing 464/755 atomic regions from SNP 138909 to 139509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,753 DEBUG Processing 331/740 atomic regions from SNP 99055 to 99655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,896 DEBUG Processing 433/710 atomic regions from SNP 129765 to 130365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,923 DEBUG Processing 653/862 atomic regions from SNP 195767 to 196367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,940 DEBUG Processing 465/755 atomic regions from SNP 139209 to 139809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,994 DEBUG Processing 332/740 atomic regions from SNP 99355 to 99955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,171 DEBUG Processing 434/710 atomic regions from SNP 130065 to 130665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,197 DEBUG Processing 654/862 atomic regions from SNP 196067 to 196667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,208 DEBUG Processing 466/755 atomic regions from SNP 139509 to 140109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,242 DEBUG Processing 333/740 atomic regions from SNP 99655 to 100255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,441 DEBUG Processing 435/710 atomic regions from SNP 130365 to 130965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,468 DEBUG Processing 467/755 atomic regions from SNP 139809 to 140409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,469 DEBUG Processing 655/862 atomic regions from SNP 196367 to 196967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,492 DEBUG Processing 334/740 atomic regions from SNP 99955 to 100555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,699 DEBUG Processing 436/710 atomic regions from SNP 130665 to 131265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,730 DEBUG Processing 468/755 atomic regions from SNP 140109 to 140709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,740 DEBUG Processing 656/862 atomic regions from SNP 196667 to 197267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,748 DEBUG Processing 335/740 atomic regions from SNP 100255 to 100855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,959 DEBUG Processing 437/710 atomic regions from SNP 130965 to 131565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,985 DEBUG Processing 469/755 atomic regions from SNP 140409 to 141009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,998 DEBUG Processing 336/740 atomic regions from SNP 100555 to 101155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,005 DEBUG Processing 657/862 atomic regions from SNP 196967 to 197567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,206 DEBUG Processing 438/710 atomic regions from SNP 131265 to 131865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,251 DEBUG Processing 470/755 atomic regions from SNP 140709 to 141309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,252 DEBUG Processing 337/740 atomic regions from SNP 100855 to 101455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,278 DEBUG Processing 658/862 atomic regions from SNP 197267 to 197867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,455 DEBUG Processing 439/710 atomic regions from SNP 131565 to 132165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,501 DEBUG Processing 338/740 atomic regions from SNP 101155 to 101755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,518 DEBUG Processing 471/755 atomic regions from SNP 141009 to 141609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,557 DEBUG Processing 659/862 atomic regions from SNP 197567 to 198167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,724 DEBUG Processing 440/710 atomic regions from SNP 131865 to 132465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,748 DEBUG Processing 339/740 atomic regions from SNP 101455 to 102055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,774 DEBUG Processing 472/755 atomic regions from SNP 141309 to 141909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,820 DEBUG Segmenting atomic regions: 2025-01-31 09:50:05,825 DEBUG Processing 660/862 atomic regions from SNP 197867 to 198467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,910 DEBUG Processing 1/672 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:05,991 DEBUG Processing 441/710 atomic regions from SNP 132165 to 132765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,993 DEBUG Processing 340/740 atomic regions from SNP 101755 to 102355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,034 DEBUG Processing 473/755 atomic regions from SNP 141609 to 142209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,087 DEBUG Processing 661/862 atomic regions from SNP 198167 to 198767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,122 DEBUG Processing 2/672 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:06,247 DEBUG Processing 341/740 atomic regions from SNP 102055 to 102655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,267 DEBUG Processing 442/710 atomic regions from SNP 132465 to 133065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,299 DEBUG Processing 474/755 atomic regions from SNP 141909 to 142509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,340 DEBUG Processing 3/672 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:06,351 DEBUG Processing 662/862 atomic regions from SNP 198467 to 199067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,487 DEBUG Processing 342/740 atomic regions from SNP 102355 to 102955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,538 DEBUG Processing 443/710 atomic regions from SNP 132765 to 133365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,554 DEBUG Processing 475/755 atomic regions from SNP 142209 to 142809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,562 DEBUG Processing 4/672 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:06,627 DEBUG Processing 663/862 atomic regions from SNP 198767 to 199367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,729 DEBUG Processing 343/740 atomic regions from SNP 102655 to 103255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,792 DEBUG Processing 5/672 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:06,801 DEBUG Processing 444/710 atomic regions from SNP 133065 to 133665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,810 DEBUG Processing 476/755 atomic regions from SNP 142509 to 143109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,907 DEBUG Processing 664/862 atomic regions from SNP 199067 to 199667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,963 DEBUG Processing 344/740 atomic regions from SNP 102955 to 103555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,021 DEBUG Processing 6/672 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:07,056 DEBUG Processing 477/755 atomic regions from SNP 142809 to 143409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,061 DEBUG Processing 445/710 atomic regions from SNP 133365 to 133965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,193 DEBUG Processing 665/862 atomic regions from SNP 199367 to 199967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,199 DEBUG Processing 345/740 atomic regions from SNP 103255 to 103855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,238 DEBUG Processing 7/672 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:07,295 DEBUG Processing 478/755 atomic regions from SNP 143109 to 143709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,329 DEBUG Processing 446/710 atomic regions from SNP 133665 to 134265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,437 DEBUG Processing 346/740 atomic regions from SNP 103555 to 104155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,459 DEBUG Processing 8/672 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:07,484 DEBUG Processing 666/862 atomic regions from SNP 199667 to 200267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,536 DEBUG Processing 479/755 atomic regions from SNP 143409 to 144009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,591 DEBUG Processing 447/710 atomic regions from SNP 133965 to 134565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,677 DEBUG Processing 9/672 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:07,677 DEBUG Processing 347/740 atomic regions from SNP 103855 to 104455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,752 DEBUG Processing 667/862 atomic regions from SNP 199967 to 200567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,790 DEBUG Processing 480/755 atomic regions from SNP 143709 to 144309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,853 DEBUG Processing 448/710 atomic regions from SNP 134265 to 134865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,893 DEBUG Processing 10/672 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:07,908 DEBUG Processing 348/740 atomic regions from SNP 104155 to 104755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,020 DEBUG Processing 668/862 atomic regions from SNP 200267 to 200867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,061 DEBUG Processing 481/755 atomic regions from SNP 144009 to 144609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,114 DEBUG Processing 11/672 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:08,123 DEBUG Processing 449/710 atomic regions from SNP 134565 to 135165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,137 DEBUG Processing 349/740 atomic regions from SNP 104455 to 105055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,280 DEBUG Processing 669/862 atomic regions from SNP 200567 to 201167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,319 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:50:08,321 DEBUG chr9: Signal quantile: 0.994. signal threshold: 14. Best RMSEA: 0.019 2025-01-31 09:50:08,328 DEBUG Processing 482/755 atomic regions from SNP 144309 to 144909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,330 DEBUG Processing 12/672 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:08,374 DEBUG Processing 350/740 atomic regions from SNP 104755 to 105355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,375 DEBUG Processing 450/710 atomic regions from SNP 134865 to 135465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,537 DEBUG Processing 670/862 atomic regions from SNP 200867 to 201467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,551 DEBUG Processing 13/672 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:08,605 DEBUG Processing 483/755 atomic regions from SNP 144609 to 145209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,619 DEBUG Processing 351/740 atomic regions from SNP 105055 to 105655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,651 DEBUG Processing 451/710 atomic regions from SNP 135165 to 135765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,769 DEBUG Processing 14/672 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:08,795 DEBUG Processing 671/862 atomic regions from SNP 201167 to 201767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,864 DEBUG Processing 352/740 atomic regions from SNP 105355 to 105955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,869 DEBUG Processing 484/755 atomic regions from SNP 144909 to 145509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,907 DEBUG Processing 452/710 atomic regions from SNP 135465 to 136065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,985 DEBUG Processing 15/672 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:09,051 DEBUG Processing 672/862 atomic regions from SNP 201467 to 202067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,106 DEBUG Processing 353/740 atomic regions from SNP 105655 to 106255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,118 DEBUG Processing 485/755 atomic regions from SNP 145209 to 145809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,149 DEBUG Processing 453/710 atomic regions from SNP 135765 to 136365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,207 DEBUG Processing 16/672 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:09,299 DEBUG Processing 673/862 atomic regions from SNP 201767 to 202367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,342 DEBUG Processing 354/740 atomic regions from SNP 105955 to 106555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,361 DEBUG Processing 486/755 atomic regions from SNP 145509 to 146109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,392 DEBUG Processing 454/710 atomic regions from SNP 136065 to 136665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,426 DEBUG Processing 17/672 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:09,547 DEBUG Processing 674/862 atomic regions from SNP 202067 to 202667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,582 DEBUG Processing 355/740 atomic regions from SNP 106255 to 106855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,604 DEBUG Processing 487/755 atomic regions from SNP 145809 to 146409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,639 DEBUG Processing 455/710 atomic regions from SNP 136365 to 136965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,644 DEBUG Processing 18/672 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:09,795 DEBUG Processing 675/862 atomic regions from SNP 202367 to 202967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,823 DEBUG Processing 356/740 atomic regions from SNP 106555 to 107155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,851 DEBUG Processing 488/755 atomic regions from SNP 146109 to 146709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,863 DEBUG Processing 19/672 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:09,888 DEBUG Processing 456/710 atomic regions from SNP 136665 to 137265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,048 DEBUG Processing 676/862 atomic regions from SNP 202667 to 203267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,070 DEBUG Processing 357/740 atomic regions from SNP 106855 to 107455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,080 DEBUG Processing 20/672 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:10,101 DEBUG Processing 489/755 atomic regions from SNP 146409 to 147009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,140 DEBUG Processing 457/710 atomic regions from SNP 136965 to 137565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,294 DEBUG Processing 21/672 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:10,314 DEBUG Processing 358/740 atomic regions from SNP 107155 to 107755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,330 DEBUG Processing 677/862 atomic regions from SNP 202967 to 203567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,354 DEBUG Processing 490/755 atomic regions from SNP 146709 to 147309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,392 DEBUG Processing 458/710 atomic regions from SNP 137265 to 137865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,506 DEBUG Processing 22/672 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:10,513 DEBUG chr9 total SNP count: 219371 2025-01-31 09:50:10,513 DEBUG chr9 length: 124595110 2025-01-31 09:50:10,513 DEBUG ----------------------------------------- 2025-01-31 09:50:10,513 INFO Processing SNPs in chr9 2025-01-31 09:50:10,552 DEBUG Processing 359/740 atomic regions from SNP 107455 to 108055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,600 DEBUG Processing 491/755 atomic regions from SNP 147009 to 147609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,608 DEBUG Processing 678/862 atomic regions from SNP 203267 to 203867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,641 DEBUG Processing 459/710 atomic regions from SNP 137565 to 138165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,720 DEBUG Processing 23/672 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:10,735 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 219371)] 2025-01-31 09:50:10,789 DEBUG Processing 360/740 atomic regions from SNP 107755 to 108355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,842 DEBUG Processing 492/755 atomic regions from SNP 147309 to 147909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,872 DEBUG Processing 679/862 atomic regions from SNP 203567 to 204167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,885 DEBUG Processing 460/710 atomic regions from SNP 137865 to 138465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,888 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:10,932 DEBUG Processing 24/672 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:11,026 DEBUG Processing 361/740 atomic regions from SNP 108055 to 108655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,080 DEBUG Processing 493/755 atomic regions from SNP 147609 to 148209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,126 DEBUG Processing 680/862 atomic regions from SNP 203867 to 204467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,129 DEBUG Processing 461/710 atomic regions from SNP 138165 to 138765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,140 DEBUG Processing 25/672 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:11,265 DEBUG Processing 362/740 atomic regions from SNP 108355 to 108955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,329 DEBUG Processing 494/755 atomic regions from SNP 147909 to 148509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,348 DEBUG Processing 26/672 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:11,372 DEBUG Processing 462/710 atomic regions from SNP 138465 to 139065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,380 DEBUG Processing 681/862 atomic regions from SNP 204167 to 204767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,494 DEBUG Processing 363/740 atomic regions from SNP 108655 to 109255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,555 DEBUG Processing 27/672 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:11,571 DEBUG Processing 495/755 atomic regions from SNP 148209 to 148809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,619 DEBUG Processing 463/710 atomic regions from SNP 138765 to 139365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,633 DEBUG Processing 682/862 atomic regions from SNP 204467 to 205067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,724 DEBUG Processing 364/740 atomic regions from SNP 108955 to 109555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,760 DEBUG Processing 28/672 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:11,808 DEBUG Processing 496/755 atomic regions from SNP 148509 to 149109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,869 DEBUG Processing 464/710 atomic regions from SNP 139065 to 139665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,895 DEBUG Processing 683/862 atomic regions from SNP 204767 to 205367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,956 DEBUG Processing 365/740 atomic regions from SNP 109255 to 109855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,966 DEBUG Processing 29/672 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:12,046 DEBUG Processing 497/755 atomic regions from SNP 148809 to 149409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,116 DEBUG Processing 465/710 atomic regions from SNP 139365 to 139965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,157 DEBUG Processing 684/862 atomic regions from SNP 205067 to 205667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,179 DEBUG Processing 30/672 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:12,194 DEBUG Processing 366/740 atomic regions from SNP 109555 to 110155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,288 DEBUG Processing 498/755 atomic regions from SNP 149109 to 149709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,362 DEBUG Processing 466/710 atomic regions from SNP 139665 to 140265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,393 DEBUG Processing 31/672 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:12,415 DEBUG Processing 685/862 atomic regions from SNP 205367 to 205967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,429 DEBUG Processing 367/740 atomic regions from SNP 109855 to 110455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,536 DEBUG Processing 499/755 atomic regions from SNP 149409 to 150009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,605 DEBUG Processing 32/672 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:12,611 DEBUG Processing 467/710 atomic regions from SNP 139965 to 140565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,667 DEBUG Processing 368/740 atomic regions from SNP 110155 to 110755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,688 DEBUG Processing 686/862 atomic regions from SNP 205667 to 206267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,782 DEBUG Processing 500/755 atomic regions from SNP 149709 to 150309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,826 DEBUG Processing 33/672 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:12,859 DEBUG Processing 468/710 atomic regions from SNP 140265 to 140865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,907 DEBUG Processing 369/740 atomic regions from SNP 110455 to 111055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,968 DEBUG Processing 687/862 atomic regions from SNP 205967 to 206567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,027 DEBUG Processing 501/755 atomic regions from SNP 150009 to 150609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,049 DEBUG Processing 34/672 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:13,118 DEBUG Processing 469/710 atomic regions from SNP 140565 to 141165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,146 DEBUG Processing 370/740 atomic regions from SNP 110755 to 111355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,234 DEBUG Processing 688/862 atomic regions from SNP 206267 to 206867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,266 DEBUG Processing 35/672 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:13,269 DEBUG Processing 502/755 atomic regions from SNP 150309 to 150909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,373 DEBUG Processing 470/710 atomic regions from SNP 140865 to 141465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,387 DEBUG Processing 371/740 atomic regions from SNP 111055 to 111655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,480 DEBUG Processing 36/672 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:13,486 DEBUG Processing 689/862 atomic regions from SNP 206567 to 207167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,520 DEBUG Processing 503/755 atomic regions from SNP 150609 to 151209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,616 DEBUG Processing 471/710 atomic regions from SNP 141165 to 141765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,623 DEBUG Processing 372/740 atomic regions from SNP 111355 to 111955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,693 DEBUG Processing 37/672 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:13,743 DEBUG Processing 690/862 atomic regions from SNP 206867 to 207467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,775 DEBUG Processing 504/755 atomic regions from SNP 150909 to 151509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,864 DEBUG Processing 373/740 atomic regions from SNP 111655 to 112255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,866 DEBUG Processing 472/710 atomic regions from SNP 141465 to 142065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,907 DEBUG Processing 38/672 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:14,016 DEBUG Processing 691/862 atomic regions from SNP 207167 to 207767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,020 DEBUG Processing 505/755 atomic regions from SNP 151209 to 151809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,107 DEBUG Processing 374/740 atomic regions from SNP 111955 to 112555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,115 DEBUG Processing 473/710 atomic regions from SNP 141765 to 142365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,117 DEBUG Processing 39/672 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:14,262 DEBUG Processing 506/755 atomic regions from SNP 151509 to 152109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,294 DEBUG Processing 692/862 atomic regions from SNP 207467 to 208067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,330 DEBUG Processing 40/672 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:14,352 DEBUG Processing 375/740 atomic regions from SNP 112255 to 112855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,367 DEBUG Processing 474/710 atomic regions from SNP 142065 to 142665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,505 DEBUG Processing 507/755 atomic regions from SNP 151809 to 152409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,541 DEBUG Processing 41/672 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:14,562 DEBUG Processing 693/862 atomic regions from SNP 207767 to 208367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,595 DEBUG Processing 376/740 atomic regions from SNP 112555 to 113155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,619 DEBUG Processing 475/710 atomic regions from SNP 142365 to 142965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,740 DEBUG Processing 508/755 atomic regions from SNP 152109 to 152709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,752 DEBUG Processing 42/672 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:14,836 DEBUG Processing 377/740 atomic regions from SNP 112855 to 113455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,842 DEBUG Processing 694/862 atomic regions from SNP 208067 to 208667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,866 DEBUG Processing 476/710 atomic regions from SNP 142665 to 143265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,959 DEBUG Processing 43/672 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:14,971 DEBUG Processing 509/755 atomic regions from SNP 152409 to 153009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,077 DEBUG Processing 378/740 atomic regions from SNP 113155 to 113755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,115 DEBUG Processing 477/710 atomic regions from SNP 142965 to 143565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,116 DEBUG Processing 695/862 atomic regions from SNP 208367 to 208967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,167 DEBUG Processing 44/672 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:15,206 DEBUG Processing 510/755 atomic regions from SNP 152709 to 153309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,313 DEBUG Processing 379/740 atomic regions from SNP 113455 to 114055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,365 DEBUG Processing 478/710 atomic regions from SNP 143265 to 143865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,381 DEBUG Processing 45/672 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:15,400 DEBUG Processing 696/862 atomic regions from SNP 208667 to 209267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,447 DEBUG Processing 511/755 atomic regions from SNP 153009 to 153609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,544 DEBUG Processing 380/740 atomic regions from SNP 113755 to 114355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,592 DEBUG Processing 46/672 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:15,606 DEBUG Processing 479/710 atomic regions from SNP 143565 to 144165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,686 DEBUG Processing 697/862 atomic regions from SNP 208967 to 209567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,691 DEBUG Processing 512/755 atomic regions from SNP 153309 to 153909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,796 DEBUG Processing 381/740 atomic regions from SNP 114055 to 114655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,797 DEBUG Processing 47/672 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:15,841 DEBUG Processing 480/710 atomic regions from SNP 143865 to 144465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,935 DEBUG Processing 513/755 atomic regions from SNP 153609 to 154209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,966 DEBUG Processing 698/862 atomic regions from SNP 209267 to 209867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,015 DEBUG Processing 48/672 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:16,062 DEBUG Processing 382/740 atomic regions from SNP 114355 to 114955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,081 DEBUG Processing 481/710 atomic regions from SNP 144165 to 144765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,177 DEBUG Processing 514/755 atomic regions from SNP 153909 to 154509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,234 DEBUG Processing 49/672 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:16,235 DEBUG Processing 699/862 atomic regions from SNP 209567 to 210167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,328 DEBUG Processing 383/740 atomic regions from SNP 114655 to 115255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,328 DEBUG Processing 482/710 atomic regions from SNP 144465 to 145065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,420 DEBUG Processing 515/755 atomic regions from SNP 154209 to 154809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,452 DEBUG Processing 50/672 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:16,485 DEBUG Processing 700/862 atomic regions from SNP 209867 to 210467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,573 DEBUG Processing 483/710 atomic regions from SNP 144765 to 145365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,600 DEBUG Processing 384/740 atomic regions from SNP 114955 to 115555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,661 DEBUG Processing 516/755 atomic regions from SNP 154509 to 155109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,673 DEBUG Processing 51/672 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:16,736 DEBUG Processing 701/862 atomic regions from SNP 210167 to 210767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,815 DEBUG Processing 484/710 atomic regions from SNP 145065 to 145665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,871 DEBUG Processing 385/740 atomic regions from SNP 115255 to 115855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,891 DEBUG Processing 52/672 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:16,895 DEBUG Processing 517/755 atomic regions from SNP 154809 to 155409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,988 DEBUG Processing 702/862 atomic regions from SNP 210467 to 211067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,062 DEBUG Processing 485/710 atomic regions from SNP 145365 to 145965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,115 DEBUG Processing 53/672 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:17,129 DEBUG Processing 518/755 atomic regions from SNP 155109 to 155709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,146 DEBUG Processing 386/740 atomic regions from SNP 115555 to 116155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,241 DEBUG Processing 703/862 atomic regions from SNP 210767 to 211367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,319 DEBUG Processing 486/710 atomic regions from SNP 145665 to 146265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,338 DEBUG Processing 54/672 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:17,374 DEBUG Processing 519/755 atomic regions from SNP 155409 to 156009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,425 DEBUG Processing 387/740 atomic regions from SNP 115855 to 116455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,498 DEBUG Processing 704/862 atomic regions from SNP 211067 to 211667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,553 DEBUG Processing 55/672 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:17,580 DEBUG Processing 487/710 atomic regions from SNP 145965 to 146565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,622 DEBUG Processing 520/755 atomic regions from SNP 155709 to 156309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,696 DEBUG Processing 388/740 atomic regions from SNP 116155 to 116755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,759 DEBUG Processing 705/862 atomic regions from SNP 211367 to 211967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,759 DEBUG Processing 56/672 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:17,819 DEBUG Processing 488/710 atomic regions from SNP 146265 to 146865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,880 DEBUG Processing 521/755 atomic regions from SNP 156009 to 156609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,941 DEBUG Processing 389/740 atomic regions from SNP 116455 to 117055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,972 DEBUG Processing 57/672 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:18,033 DEBUG Processing 706/862 atomic regions from SNP 211667 to 212267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,067 DEBUG Processing 489/710 atomic regions from SNP 146565 to 147165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,109 DEBUG Processing 522/755 atomic regions from SNP 156309 to 156909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,186 DEBUG Processing 58/672 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:18,195 DEBUG Processing 390/740 atomic regions from SNP 116755 to 117355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,317 DEBUG Processing 707/862 atomic regions from SNP 211967 to 212567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,331 DEBUG Processing 490/710 atomic regions from SNP 146865 to 147465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,354 DEBUG Processing 523/755 atomic regions from SNP 156609 to 157209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,406 DEBUG Processing 59/672 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:18,466 DEBUG Processing 391/740 atomic regions from SNP 117055 to 117655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,590 DEBUG Processing 708/862 atomic regions from SNP 212267 to 212867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,595 DEBUG Processing 491/710 atomic regions from SNP 147165 to 147765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,604 DEBUG Processing 524/755 atomic regions from SNP 156909 to 157509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,629 DEBUG Processing 60/672 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:18,734 DEBUG Processing 392/740 atomic regions from SNP 117355 to 117955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,847 DEBUG Processing 709/862 atomic regions from SNP 212567 to 213167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,855 DEBUG Processing 61/672 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:18,855 DEBUG Processing 492/710 atomic regions from SNP 147465 to 148065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,856 DEBUG Processing 525/755 atomic regions from SNP 157209 to 157809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,976 DEBUG Processing 393/740 atomic regions from SNP 117655 to 118255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,080 DEBUG Processing 62/672 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:19,105 DEBUG Processing 526/755 atomic regions from SNP 157509 to 158109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,106 DEBUG Processing 710/862 atomic regions from SNP 212867 to 213467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,122 DEBUG Processing 493/710 atomic regions from SNP 147765 to 148365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,206 DEBUG Processing 394/740 atomic regions from SNP 117955 to 118555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,306 DEBUG Processing 63/672 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:19,352 DEBUG Processing 527/755 atomic regions from SNP 157809 to 158409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,363 DEBUG Processing 711/862 atomic regions from SNP 213167 to 213767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,378 DEBUG Processing 494/710 atomic regions from SNP 148065 to 148665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,455 DEBUG Processing 395/740 atomic regions from SNP 118255 to 118855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,541 DEBUG Processing 64/672 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:19,597 DEBUG Processing 528/755 atomic regions from SNP 158109 to 158709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,619 DEBUG Processing 712/862 atomic regions from SNP 213467 to 214067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,625 DEBUG Processing 495/710 atomic regions from SNP 148365 to 148965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,690 DEBUG Processing 396/740 atomic regions from SNP 118555 to 119155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,772 DEBUG Processing 65/672 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:19,846 DEBUG Processing 529/755 atomic regions from SNP 158409 to 159009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,872 DEBUG Processing 496/710 atomic regions from SNP 148665 to 149265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,879 DEBUG Processing 713/862 atomic regions from SNP 213767 to 214367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,946 DEBUG Processing 397/740 atomic regions from SNP 118855 to 119455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,983 DEBUG Processing 66/672 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:20,089 DEBUG Processing 530/755 atomic regions from SNP 158709 to 159309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,130 DEBUG Processing 714/862 atomic regions from SNP 214067 to 214667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,132 DEBUG Processing 497/710 atomic regions from SNP 148965 to 149565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,192 DEBUG Processing 67/672 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:20,196 DEBUG Processing 398/740 atomic regions from SNP 119155 to 119755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,328 DEBUG Processing 531/755 atomic regions from SNP 159009 to 159609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,392 DEBUG Processing 498/710 atomic regions from SNP 149265 to 149865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,399 DEBUG Processing 715/862 atomic regions from SNP 214367 to 214967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,402 DEBUG Processing 68/672 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:20,433 DEBUG Processing 399/740 atomic regions from SNP 119455 to 120055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,568 DEBUG Processing 532/755 atomic regions from SNP 159309 to 159909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,611 DEBUG Processing 69/672 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:20,645 DEBUG Processing 499/710 atomic regions from SNP 149565 to 150165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,665 DEBUG Processing 716/862 atomic regions from SNP 214667 to 215267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,671 DEBUG Processing 400/740 atomic regions from SNP 119755 to 120355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,817 DEBUG Processing 533/755 atomic regions from SNP 159609 to 160209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,818 DEBUG Processing 70/672 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:20,890 DEBUG Processing 500/710 atomic regions from SNP 149865 to 150465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,906 DEBUG Processing 401/740 atomic regions from SNP 120055 to 120655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,954 DEBUG Processing 717/862 atomic regions from SNP 214967 to 215567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,030 DEBUG Processing 71/672 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:21,065 DEBUG Processing 534/755 atomic regions from SNP 159909 to 160509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,128 DEBUG Processing 501/710 atomic regions from SNP 150165 to 150765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,142 DEBUG Processing 402/740 atomic regions from SNP 120355 to 120955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,245 DEBUG Processing 718/862 atomic regions from SNP 215267 to 215867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,265 DEBUG Processing 72/672 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:21,320 DEBUG Processing 535/755 atomic regions from SNP 160209 to 160809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,369 DEBUG Processing 502/710 atomic regions from SNP 150465 to 151065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,379 DEBUG Processing 403/740 atomic regions from SNP 120655 to 121255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,495 DEBUG Processing 73/672 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:21,531 DEBUG Processing 719/862 atomic regions from SNP 215567 to 216167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,557 DEBUG Processing 536/755 atomic regions from SNP 160509 to 161109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,613 DEBUG Processing 503/710 atomic regions from SNP 150765 to 151365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,619 DEBUG Processing 404/740 atomic regions from SNP 120955 to 121555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,738 DEBUG Processing 74/672 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:21,794 DEBUG Processing 537/755 atomic regions from SNP 160809 to 161409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,807 DEBUG Processing 720/862 atomic regions from SNP 215867 to 216467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,854 DEBUG Processing 504/710 atomic regions from SNP 151065 to 151665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,856 DEBUG Processing 405/740 atomic regions from SNP 121255 to 121855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,979 DEBUG Processing 75/672 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:22,038 DEBUG Processing 538/755 atomic regions from SNP 161109 to 161709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,080 DEBUG Processing 721/862 atomic regions from SNP 216167 to 216767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,105 DEBUG Processing 406/740 atomic regions from SNP 121555 to 122155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,106 DEBUG Processing 505/710 atomic regions from SNP 151365 to 151965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,219 DEBUG Processing 76/672 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:22,284 DEBUG Processing 539/755 atomic regions from SNP 161409 to 162009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,357 DEBUG Processing 722/862 atomic regions from SNP 216467 to 217067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,358 DEBUG Processing 407/740 atomic regions from SNP 121855 to 122455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,362 DEBUG Processing 506/710 atomic regions from SNP 151665 to 152265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,451 DEBUG Processing 77/672 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:22,523 DEBUG Processing 540/755 atomic regions from SNP 161709 to 162309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,609 DEBUG Processing 408/740 atomic regions from SNP 122155 to 122755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,614 DEBUG Processing 507/710 atomic regions from SNP 151965 to 152565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,621 DEBUG Processing 723/862 atomic regions from SNP 216767 to 217367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,692 DEBUG Processing 78/672 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:22,755 DEBUG Processing 541/755 atomic regions from SNP 162009 to 162609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,859 DEBUG Processing 409/740 atomic regions from SNP 122455 to 123055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,866 DEBUG Processing 508/710 atomic regions from SNP 152265 to 152865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,884 DEBUG Processing 724/862 atomic regions from SNP 217067 to 217667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,936 DEBUG Processing 79/672 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:22,982 DEBUG Processing 542/755 atomic regions from SNP 162309 to 162909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,105 DEBUG Processing 410/740 atomic regions from SNP 122755 to 123355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,119 DEBUG Processing 509/710 atomic regions from SNP 152565 to 153165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,147 DEBUG Processing 725/862 atomic regions from SNP 217367 to 217967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,170 DEBUG Processing 80/672 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:23,217 DEBUG Processing 543/755 atomic regions from SNP 162609 to 163209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,371 DEBUG Processing 510/710 atomic regions from SNP 152865 to 153465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,371 DEBUG Processing 411/740 atomic regions from SNP 123055 to 123655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,394 DEBUG Processing 81/672 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:23,412 DEBUG Processing 726/862 atomic regions from SNP 217667 to 218267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,456 DEBUG Processing 544/755 atomic regions from SNP 162909 to 163509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,614 DEBUG Processing 82/672 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:23,618 DEBUG Processing 412/740 atomic regions from SNP 123355 to 123955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,620 DEBUG Processing 511/710 atomic regions from SNP 153165 to 153765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,671 DEBUG Processing 727/862 atomic regions from SNP 217967 to 218567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,697 DEBUG Processing 545/755 atomic regions from SNP 163209 to 163809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,859 DEBUG Processing 83/672 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:23,864 DEBUG Processing 413/740 atomic regions from SNP 123655 to 124255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,867 DEBUG Processing 512/710 atomic regions from SNP 153465 to 154065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,925 DEBUG Processing 728/862 atomic regions from SNP 218267 to 218867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,937 DEBUG Processing 546/755 atomic regions from SNP 163509 to 164109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,098 DEBUG Processing 84/672 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:24,110 DEBUG Processing 414/740 atomic regions from SNP 123955 to 124555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,116 DEBUG Processing 513/710 atomic regions from SNP 153765 to 154365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,179 DEBUG Processing 729/862 atomic regions from SNP 218567 to 219167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,181 DEBUG Processing 547/755 atomic regions from SNP 163809 to 164409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,340 DEBUG Processing 85/672 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:24,351 DEBUG Processing 415/740 atomic regions from SNP 124255 to 124855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,362 DEBUG Processing 514/710 atomic regions from SNP 154065 to 154665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,426 DEBUG Processing 548/755 atomic regions from SNP 164109 to 164709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,435 DEBUG Processing 730/862 atomic regions from SNP 218867 to 219467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,581 DEBUG Processing 86/672 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:24,594 DEBUG Processing 416/740 atomic regions from SNP 124555 to 125155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,612 DEBUG Processing 515/710 atomic regions from SNP 154365 to 154965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,679 DEBUG Processing 549/755 atomic regions from SNP 164409 to 165009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,696 DEBUG Processing 731/862 atomic regions from SNP 219167 to 219767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,812 DEBUG Processing 87/672 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:24,834 DEBUG Processing 417/740 atomic regions from SNP 124855 to 125455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,853 DEBUG Processing 516/710 atomic regions from SNP 154665 to 155265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,920 DEBUG Processing 550/755 atomic regions from SNP 164709 to 165309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,957 DEBUG Processing 732/862 atomic regions from SNP 219467 to 220067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,034 DEBUG Processing 88/672 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:25,076 DEBUG Processing 418/740 atomic regions from SNP 125155 to 125755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,098 DEBUG Processing 517/710 atomic regions from SNP 154965 to 155565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,163 DEBUG Processing 551/755 atomic regions from SNP 165009 to 165609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,233 DEBUG Processing 733/862 atomic regions from SNP 219767 to 220367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,251 DEBUG Processing 89/672 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:25,322 DEBUG Processing 419/740 atomic regions from SNP 125455 to 126055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,346 DEBUG Processing 518/710 atomic regions from SNP 155265 to 155865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,408 DEBUG Processing 552/755 atomic regions from SNP 165309 to 165909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,463 DEBUG Processing 90/672 atomic regions from SNP 26789 to 27389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:25,511 DEBUG Processing 734/862 atomic regions from SNP 220067 to 220667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,570 DEBUG Processing 420/740 atomic regions from SNP 125755 to 126355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,595 DEBUG Processing 519/710 atomic regions from SNP 155565 to 156165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,653 DEBUG Processing 553/755 atomic regions from SNP 165609 to 166209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,672 DEBUG Processing 91/672 atomic regions from SNP 27089 to 27689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:25,782 DEBUG Processing 735/862 atomic regions from SNP 220367 to 220967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,814 DEBUG Processing 421/740 atomic regions from SNP 126055 to 126655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,843 DEBUG Processing 520/710 atomic regions from SNP 155865 to 156465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,885 DEBUG Processing 92/672 atomic regions from SNP 27389 to 27989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:25,895 DEBUG Processing 554/755 atomic regions from SNP 165909 to 166509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,047 DEBUG Processing 736/862 atomic regions from SNP 220667 to 221267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,064 DEBUG Processing 422/740 atomic regions from SNP 126355 to 126955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,098 DEBUG Processing 521/710 atomic regions from SNP 156165 to 156765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,105 DEBUG Processing 93/672 atomic regions from SNP 27689 to 28289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:26,160 DEBUG Processing 555/755 atomic regions from SNP 166209 to 166809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,322 DEBUG Processing 423/740 atomic regions from SNP 126655 to 127255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,325 DEBUG Processing 737/862 atomic regions from SNP 220967 to 221567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,335 DEBUG Processing 94/672 atomic regions from SNP 27989 to 28589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:26,362 DEBUG Processing 522/710 atomic regions from SNP 156465 to 157065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,412 DEBUG Processing 556/755 atomic regions from SNP 166509 to 167109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,565 DEBUG Processing 95/672 atomic regions from SNP 28289 to 28889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:26,577 DEBUG Processing 424/740 atomic regions from SNP 126955 to 127555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,603 DEBUG Processing 738/862 atomic regions from SNP 221267 to 221867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,622 DEBUG Processing 523/710 atomic regions from SNP 156765 to 157365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,665 DEBUG Processing 557/755 atomic regions from SNP 166809 to 167409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,789 DEBUG Processing 96/672 atomic regions from SNP 28589 to 29189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:26,826 DEBUG Processing 425/740 atomic regions from SNP 127255 to 127855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,877 DEBUG Processing 524/710 atomic regions from SNP 157065 to 157665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,887 DEBUG Processing 739/862 atomic regions from SNP 221567 to 222167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,919 DEBUG Processing 558/755 atomic regions from SNP 167109 to 167709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,010 DEBUG Processing 97/672 atomic regions from SNP 28889 to 29489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:27,073 DEBUG Processing 426/740 atomic regions from SNP 127555 to 128155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,133 DEBUG Processing 525/710 atomic regions from SNP 157365 to 157965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,172 DEBUG Processing 559/755 atomic regions from SNP 167409 to 168009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,173 DEBUG Processing 740/862 atomic regions from SNP 221867 to 222467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,229 DEBUG Processing 98/672 atomic regions from SNP 29189 to 29789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:27,319 DEBUG Processing 427/740 atomic regions from SNP 127855 to 128455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,389 DEBUG Processing 526/710 atomic regions from SNP 157665 to 158265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,429 DEBUG Processing 560/755 atomic regions from SNP 167709 to 168309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,442 DEBUG Processing 741/862 atomic regions from SNP 222167 to 222767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,450 DEBUG Processing 99/672 atomic regions from SNP 29489 to 30089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:27,571 DEBUG Processing 428/740 atomic regions from SNP 128155 to 128755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,648 DEBUG Processing 527/710 atomic regions from SNP 157965 to 158565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,672 DEBUG Processing 100/672 atomic regions from SNP 29789 to 30389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:27,683 DEBUG Processing 561/755 atomic regions from SNP 168009 to 168609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,707 DEBUG Processing 742/862 atomic regions from SNP 222467 to 223067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,825 DEBUG Processing 429/740 atomic regions from SNP 128455 to 129055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,891 DEBUG Processing 101/672 atomic regions from SNP 30089 to 30689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:27,905 DEBUG Processing 528/710 atomic regions from SNP 158265 to 158865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,940 DEBUG Processing 562/755 atomic regions from SNP 168309 to 168909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,970 DEBUG Processing 743/862 atomic regions from SNP 222767 to 223367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,077 DEBUG Processing 430/740 atomic regions from SNP 128755 to 129355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,109 DEBUG Processing 102/672 atomic regions from SNP 30389 to 30989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:28,160 DEBUG Processing 529/710 atomic regions from SNP 158565 to 159165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,195 DEBUG Processing 563/755 atomic regions from SNP 168609 to 169209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,233 DEBUG Processing 744/862 atomic regions from SNP 223067 to 223667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,328 DEBUG Processing 431/740 atomic regions from SNP 129055 to 129655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,336 DEBUG Processing 103/672 atomic regions from SNP 30689 to 31289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:28,423 DEBUG Processing 530/710 atomic regions from SNP 158865 to 159465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,452 DEBUG Processing 564/755 atomic regions from SNP 168909 to 169509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,502 DEBUG Processing 745/862 atomic regions from SNP 223367 to 223967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,560 DEBUG Processing 104/672 atomic regions from SNP 30989 to 31589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:28,579 DEBUG Processing 432/740 atomic regions from SNP 129355 to 129955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,695 DEBUG Processing 531/710 atomic regions from SNP 159165 to 159765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,702 DEBUG Processing 565/755 atomic regions from SNP 169209 to 169809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,773 DEBUG Processing 746/862 atomic regions from SNP 223667 to 224267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,789 DEBUG Processing 105/672 atomic regions from SNP 31289 to 31889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:28,834 DEBUG Processing 433/740 atomic regions from SNP 129655 to 130255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,955 DEBUG Processing 566/755 atomic regions from SNP 169509 to 170109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,957 DEBUG Processing 532/710 atomic regions from SNP 159465 to 160065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,019 DEBUG Processing 106/672 atomic regions from SNP 31589 to 32189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:29,045 DEBUG Processing 747/862 atomic regions from SNP 223967 to 224567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,094 DEBUG Processing 434/740 atomic regions from SNP 129955 to 130555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,203 DEBUG Processing 567/755 atomic regions from SNP 169809 to 170409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,206 DEBUG Processing 533/710 atomic regions from SNP 159765 to 160365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,248 DEBUG Processing 107/672 atomic regions from SNP 31889 to 32489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:29,315 DEBUG Processing 748/862 atomic regions from SNP 224267 to 224867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,348 DEBUG Processing 435/740 atomic regions from SNP 130255 to 130855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,453 DEBUG Processing 568/755 atomic regions from SNP 170109 to 170709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,454 DEBUG Processing 534/710 atomic regions from SNP 160065 to 160665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,484 DEBUG Processing 108/672 atomic regions from SNP 32189 to 32789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:29,587 DEBUG Processing 749/862 atomic regions from SNP 224567 to 225167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,602 DEBUG Processing 436/740 atomic regions from SNP 130555 to 131155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,708 DEBUG Processing 569/755 atomic regions from SNP 170409 to 171009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,709 DEBUG Processing 535/710 atomic regions from SNP 160365 to 160965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,721 DEBUG Processing 109/672 atomic regions from SNP 32489 to 33089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:29,854 DEBUG Processing 437/740 atomic regions from SNP 130855 to 131455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,858 DEBUG Processing 750/862 atomic regions from SNP 224867 to 225467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,944 DEBUG Processing 110/672 atomic regions from SNP 32789 to 33389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:29,962 DEBUG Processing 570/755 atomic regions from SNP 170709 to 171309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,965 DEBUG Processing 536/710 atomic regions from SNP 160665 to 161265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,115 DEBUG Processing 438/740 atomic regions from SNP 131155 to 131755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,128 DEBUG Processing 751/862 atomic regions from SNP 225167 to 225767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,164 DEBUG Processing 111/672 atomic regions from SNP 33089 to 33689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:30,216 DEBUG Processing 571/755 atomic regions from SNP 171009 to 171609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,221 DEBUG Processing 537/710 atomic regions from SNP 160965 to 161565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,370 DEBUG Processing 439/740 atomic regions from SNP 131455 to 132055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,389 DEBUG Processing 112/672 atomic regions from SNP 33389 to 33989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:30,397 DEBUG Processing 752/862 atomic regions from SNP 225467 to 226067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,465 DEBUG Processing 572/755 atomic regions from SNP 171309 to 171909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,473 DEBUG Processing 538/710 atomic regions from SNP 161265 to 161865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,610 DEBUG Processing 113/672 atomic regions from SNP 33689 to 34289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:30,619 DEBUG Processing 440/740 atomic regions from SNP 131755 to 132355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,664 DEBUG Processing 753/862 atomic regions from SNP 225767 to 226367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,717 DEBUG Processing 573/755 atomic regions from SNP 171609 to 172209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,727 DEBUG Processing 539/710 atomic regions from SNP 161565 to 162165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,833 DEBUG Processing 114/672 atomic regions from SNP 33989 to 34589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:30,869 DEBUG Processing 441/740 atomic regions from SNP 132055 to 132655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,934 DEBUG Processing 754/862 atomic regions from SNP 226067 to 226667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,973 DEBUG Processing 574/755 atomic regions from SNP 171909 to 172509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,981 DEBUG Processing 540/710 atomic regions from SNP 161865 to 162465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,064 DEBUG Processing 115/672 atomic regions from SNP 34289 to 34889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:31,109 DEBUG Processing 442/740 atomic regions from SNP 132355 to 132955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,203 DEBUG Processing 755/862 atomic regions from SNP 226367 to 226967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,231 DEBUG Processing 575/755 atomic regions from SNP 172209 to 172809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,239 DEBUG Processing 541/710 atomic regions from SNP 162165 to 162765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,287 DEBUG Processing 116/672 atomic regions from SNP 34589 to 35189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:31,341 DEBUG Processing 443/740 atomic regions from SNP 132655 to 133255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,470 DEBUG Processing 756/862 atomic regions from SNP 226667 to 227267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,496 DEBUG Processing 576/755 atomic regions from SNP 172509 to 173109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,503 DEBUG Processing 542/710 atomic regions from SNP 162465 to 163065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,507 DEBUG Processing 117/672 atomic regions from SNP 34889 to 35489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:31,583 DEBUG Processing 444/740 atomic regions from SNP 132955 to 133555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,723 DEBUG Processing 118/672 atomic regions from SNP 35189 to 35789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:31,738 DEBUG Processing 757/862 atomic regions from SNP 226967 to 227567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,756 DEBUG Processing 577/755 atomic regions from SNP 172809 to 173409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,764 DEBUG Processing 543/710 atomic regions from SNP 162765 to 163365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,833 DEBUG Processing 445/740 atomic regions from SNP 133255 to 133855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,939 DEBUG Processing 119/672 atomic regions from SNP 35489 to 36089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:32,006 DEBUG Processing 758/862 atomic regions from SNP 227267 to 227867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,013 DEBUG Processing 578/755 atomic regions from SNP 173109 to 173709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,020 DEBUG Processing 544/710 atomic regions from SNP 163065 to 163665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,087 DEBUG Processing 446/740 atomic regions from SNP 133555 to 134155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,147 DEBUG Processing 120/672 atomic regions from SNP 35789 to 36389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:32,264 DEBUG Processing 579/755 atomic regions from SNP 173409 to 174009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,270 DEBUG Processing 759/862 atomic regions from SNP 227567 to 228167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,275 DEBUG Processing 545/710 atomic regions from SNP 163365 to 163965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,337 DEBUG Processing 447/740 atomic regions from SNP 133855 to 134455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,356 DEBUG Processing 121/672 atomic regions from SNP 36089 to 36689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:32,518 DEBUG Processing 580/755 atomic regions from SNP 173709 to 174309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,539 DEBUG Processing 546/710 atomic regions from SNP 163665 to 164265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,540 DEBUG Processing 760/862 atomic regions from SNP 227867 to 228467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,580 DEBUG Processing 122/672 atomic regions from SNP 36389 to 36989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:32,588 DEBUG Processing 448/740 atomic regions from SNP 134155 to 134755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,776 DEBUG Processing 581/755 atomic regions from SNP 174009 to 174609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,803 DEBUG Processing 547/710 atomic regions from SNP 163965 to 164565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,804 DEBUG Processing 123/672 atomic regions from SNP 36689 to 37289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:32,809 DEBUG Processing 761/862 atomic regions from SNP 228167 to 228767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,839 DEBUG Processing 449/740 atomic regions from SNP 134455 to 135055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,026 DEBUG Processing 124/672 atomic regions from SNP 36989 to 37589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,034 DEBUG Processing 582/755 atomic regions from SNP 174309 to 174909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,070 DEBUG Processing 548/710 atomic regions from SNP 164265 to 164865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,080 DEBUG Processing 762/862 atomic regions from SNP 228467 to 229067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,090 DEBUG Processing 450/740 atomic regions from SNP 134755 to 135355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,241 DEBUG Processing 125/672 atomic regions from SNP 37289 to 37889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,289 DEBUG Processing 583/755 atomic regions from SNP 174609 to 175209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,335 DEBUG Processing 549/710 atomic regions from SNP 164565 to 165165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,349 DEBUG Processing 451/740 atomic regions from SNP 135055 to 135655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,355 DEBUG Processing 763/862 atomic regions from SNP 228767 to 229367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,452 DEBUG Processing 126/672 atomic regions from SNP 37589 to 38189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,539 DEBUG Processing 584/755 atomic regions from SNP 174909 to 175509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,598 DEBUG Processing 550/710 atomic regions from SNP 164865 to 165465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,610 DEBUG Processing 452/740 atomic regions from SNP 135355 to 135955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,626 DEBUG Processing 764/862 atomic regions from SNP 229067 to 229667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,659 DEBUG Processing 127/672 atomic regions from SNP 37889 to 38489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,789 DEBUG Processing 585/755 atomic regions from SNP 175209 to 175809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,859 DEBUG Processing 551/710 atomic regions from SNP 165165 to 165765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,863 DEBUG Processing 453/740 atomic regions from SNP 135655 to 136255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,871 DEBUG Processing 128/672 atomic regions from SNP 38189 to 38789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,893 DEBUG Processing 765/862 atomic regions from SNP 229367 to 229967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,039 DEBUG Processing 586/755 atomic regions from SNP 175509 to 176109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,086 DEBUG Processing 129/672 atomic regions from SNP 38489 to 39089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:34,110 DEBUG Processing 552/710 atomic regions from SNP 165465 to 166065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,113 DEBUG Processing 454/740 atomic regions from SNP 135955 to 136555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,153 DEBUG Processing 766/862 atomic regions from SNP 229667 to 230267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,290 DEBUG Processing 587/755 atomic regions from SNP 175809 to 176409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,301 DEBUG Processing 130/672 atomic regions from SNP 38789 to 39389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:34,365 DEBUG Processing 455/740 atomic regions from SNP 136255 to 136855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,365 DEBUG Processing 553/710 atomic regions from SNP 165765 to 166365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,412 DEBUG Processing 767/862 atomic regions from SNP 229967 to 230567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,513 DEBUG Processing 131/672 atomic regions from SNP 39089 to 39689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:34,538 DEBUG Processing 588/755 atomic regions from SNP 176109 to 176709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,616 DEBUG Processing 456/740 atomic regions from SNP 136555 to 137155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,623 DEBUG Processing 554/710 atomic regions from SNP 166065 to 166665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,672 DEBUG Processing 768/862 atomic regions from SNP 230267 to 230867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,734 DEBUG Processing 132/672 atomic regions from SNP 39389 to 39989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:34,783 DEBUG Processing 589/755 atomic regions from SNP 176409 to 177009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,872 DEBUG Processing 457/740 atomic regions from SNP 136855 to 137455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,881 DEBUG Processing 555/710 atomic regions from SNP 166365 to 166965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,933 DEBUG Processing 769/862 atomic regions from SNP 230567 to 231167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,963 DEBUG Processing 133/672 atomic regions from SNP 39689 to 40289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:35,027 DEBUG Processing 590/755 atomic regions from SNP 176709 to 177309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,122 DEBUG Processing 458/740 atomic regions from SNP 137155 to 137755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,135 DEBUG Processing 556/710 atomic regions from SNP 166665 to 167265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,187 DEBUG Processing 134/672 atomic regions from SNP 39989 to 40589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:35,194 DEBUG Processing 770/862 atomic regions from SNP 230867 to 231467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,272 DEBUG Processing 591/755 atomic regions from SNP 177009 to 177609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,368 DEBUG Processing 459/740 atomic regions from SNP 137455 to 138055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,384 DEBUG Processing 557/710 atomic regions from SNP 166965 to 167565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,410 DEBUG Processing 135/672 atomic regions from SNP 40289 to 40889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:35,457 DEBUG Processing 771/862 atomic regions from SNP 231167 to 231767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,521 DEBUG Processing 592/755 atomic regions from SNP 177309 to 177909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,616 DEBUG Processing 460/740 atomic regions from SNP 137755 to 138355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,635 DEBUG Processing 558/710 atomic regions from SNP 167265 to 167865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,639 DEBUG Processing 136/672 atomic regions from SNP 40589 to 41189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:35,724 DEBUG Processing 772/862 atomic regions from SNP 231467 to 232067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,773 DEBUG Processing 593/755 atomic regions from SNP 177609 to 178209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,863 DEBUG Processing 461/740 atomic regions from SNP 138055 to 138655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,885 DEBUG Processing 137/672 atomic regions from SNP 40889 to 41489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:35,900 DEBUG Processing 559/710 atomic regions from SNP 167565 to 168165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,985 DEBUG Processing 773/862 atomic regions from SNP 231767 to 232367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,018 DEBUG Processing 594/755 atomic regions from SNP 177909 to 178509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,120 DEBUG Processing 138/672 atomic regions from SNP 41189 to 41789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:36,131 DEBUG Processing 462/740 atomic regions from SNP 138355 to 138955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,183 DEBUG Processing 560/710 atomic regions from SNP 167865 to 168465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,264 DEBUG Processing 595/755 atomic regions from SNP 178209 to 178809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,264 DEBUG Processing 774/862 atomic regions from SNP 232067 to 232667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,373 DEBUG Processing 139/672 atomic regions from SNP 41489 to 42089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:36,406 DEBUG Processing 463/740 atomic regions from SNP 138655 to 139255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,448 DEBUG Processing 561/710 atomic regions from SNP 168165 to 168765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,520 DEBUG Processing 596/755 atomic regions from SNP 178509 to 179109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,554 DEBUG Processing 775/862 atomic regions from SNP 232367 to 232967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,614 DEBUG Processing 140/672 atomic regions from SNP 41789 to 42389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:36,680 DEBUG Processing 464/740 atomic regions from SNP 138955 to 139555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,698 DEBUG Processing 562/710 atomic regions from SNP 168465 to 169065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,780 DEBUG Processing 597/755 atomic regions from SNP 178809 to 179409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,839 DEBUG Processing 776/862 atomic regions from SNP 232667 to 233267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,864 DEBUG Processing 141/672 atomic regions from SNP 42089 to 42689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:36,940 DEBUG Processing 563/710 atomic regions from SNP 168765 to 169365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,952 DEBUG Processing 465/740 atomic regions from SNP 139255 to 139855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,033 DEBUG Processing 598/755 atomic regions from SNP 179109 to 179709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,112 DEBUG Processing 142/672 atomic regions from SNP 42389 to 42989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:37,116 DEBUG Processing 777/862 atomic regions from SNP 232967 to 233567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,179 DEBUG Processing 564/710 atomic regions from SNP 169065 to 169665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,211 DEBUG Processing 466/740 atomic regions from SNP 139555 to 140155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,280 DEBUG Processing 599/755 atomic regions from SNP 179409 to 180009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,355 DEBUG Processing 143/672 atomic regions from SNP 42689 to 43289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:37,380 DEBUG Processing 778/862 atomic regions from SNP 233267 to 233867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,427 DEBUG Processing 565/710 atomic regions from SNP 169365 to 169965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,458 DEBUG Processing 467/740 atomic regions from SNP 139855 to 140455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,532 DEBUG Processing 600/755 atomic regions from SNP 179709 to 180309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,582 DEBUG Processing 144/672 atomic regions from SNP 42989 to 43589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:37,594 DEBUG Segmenting atomic regions: 2025-01-31 09:50:37,641 DEBUG Processing 779/862 atomic regions from SNP 233567 to 234167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,680 DEBUG Processing 566/710 atomic regions from SNP 169665 to 170265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,691 DEBUG Processing 1/730 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:37,720 DEBUG Processing 468/740 atomic regions from SNP 140155 to 140755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,786 DEBUG Processing 601/755 atomic regions from SNP 180009 to 180609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,816 DEBUG Processing 145/672 atomic regions from SNP 43289 to 43889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:37,905 DEBUG Processing 780/862 atomic regions from SNP 233867 to 234467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,909 DEBUG Processing 2/730 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:37,951 DEBUG Processing 567/710 atomic regions from SNP 169965 to 170565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,999 DEBUG Processing 469/740 atomic regions from SNP 140455 to 141055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,038 DEBUG Processing 602/755 atomic regions from SNP 180309 to 180909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,069 DEBUG Processing 146/672 atomic regions from SNP 43589 to 44189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:38,134 DEBUG Processing 3/730 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:38,168 DEBUG Processing 781/862 atomic regions from SNP 234167 to 234767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,220 DEBUG Processing 568/710 atomic regions from SNP 170265 to 170865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,286 DEBUG Processing 470/740 atomic regions from SNP 140755 to 141355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,294 DEBUG Processing 603/755 atomic regions from SNP 180609 to 181209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,315 DEBUG Processing 147/672 atomic regions from SNP 43889 to 44489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:38,365 DEBUG Processing 4/730 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:38,426 DEBUG Processing 782/862 atomic regions from SNP 234467 to 235067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,475 DEBUG Processing 569/710 atomic regions from SNP 170565 to 171165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,549 DEBUG Processing 604/755 atomic regions from SNP 180909 to 181509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,556 DEBUG Processing 148/672 atomic regions from SNP 44189 to 44789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:38,570 DEBUG Processing 471/740 atomic regions from SNP 141055 to 141655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,598 DEBUG Processing 5/730 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:38,674 DEBUG Processing 783/862 atomic regions from SNP 234767 to 235367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,720 DEBUG Processing 570/710 atomic regions from SNP 170865 to 171465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,788 DEBUG Processing 149/672 atomic regions from SNP 44489 to 45089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:38,800 DEBUG Processing 605/755 atomic regions from SNP 181209 to 181809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,826 DEBUG Processing 472/740 atomic regions from SNP 141355 to 141955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,831 DEBUG Processing 6/730 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:38,931 DEBUG Processing 784/862 atomic regions from SNP 235067 to 235667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,968 DEBUG Processing 571/710 atomic regions from SNP 171165 to 171765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,011 DEBUG Processing 150/672 atomic regions from SNP 44789 to 45389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:39,041 DEBUG Processing 606/755 atomic regions from SNP 181509 to 182109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,058 DEBUG Processing 7/730 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,070 DEBUG Processing 473/740 atomic regions from SNP 141655 to 142255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,197 DEBUG Processing 785/862 atomic regions from SNP 235367 to 235967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,220 DEBUG Processing 572/710 atomic regions from SNP 171465 to 172065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,231 DEBUG Processing 151/672 atomic regions from SNP 45089 to 45689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:39,283 DEBUG Processing 8/730 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,285 DEBUG Processing 607/755 atomic regions from SNP 181809 to 182409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,314 DEBUG Processing 474/740 atomic regions from SNP 141955 to 142555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,450 DEBUG Processing 152/672 atomic regions from SNP 45389 to 45989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:39,466 DEBUG Processing 786/862 atomic regions from SNP 235667 to 236267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,471 DEBUG Processing 573/710 atomic regions from SNP 171765 to 172365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,513 DEBUG Processing 9/730 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,539 DEBUG Processing 608/755 atomic regions from SNP 182109 to 182709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,560 DEBUG Processing 475/740 atomic regions from SNP 142255 to 142855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,663 DEBUG Processing 153/672 atomic regions from SNP 45689 to 46289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:39,721 DEBUG Processing 574/710 atomic regions from SNP 172065 to 172665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,723 DEBUG Processing 787/862 atomic regions from SNP 235967 to 236567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,744 DEBUG Processing 10/730 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,795 DEBUG Processing 609/755 atomic regions from SNP 182409 to 183009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,811 DEBUG Processing 476/740 atomic regions from SNP 142555 to 143155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,876 DEBUG Processing 154/672 atomic regions from SNP 45989 to 46589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:39,971 DEBUG Processing 11/730 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,974 DEBUG Processing 788/862 atomic regions from SNP 236267 to 236867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,978 DEBUG Processing 575/710 atomic regions from SNP 172365 to 172965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,052 DEBUG Processing 610/755 atomic regions from SNP 182709 to 183309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,062 DEBUG Processing 477/740 atomic regions from SNP 142855 to 143455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,090 DEBUG Processing 155/672 atomic regions from SNP 46289 to 46889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,198 DEBUG Processing 12/730 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,231 DEBUG Processing 789/862 atomic regions from SNP 236567 to 237167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,239 DEBUG Processing 576/710 atomic regions from SNP 172665 to 173265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,304 DEBUG Processing 156/672 atomic regions from SNP 46589 to 47189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,306 DEBUG Processing 611/755 atomic regions from SNP 183009 to 183609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,310 DEBUG Processing 478/740 atomic regions from SNP 143155 to 143755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,426 DEBUG Processing 13/730 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,489 DEBUG Processing 577/710 atomic regions from SNP 172965 to 173565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,490 DEBUG Processing 790/862 atomic regions from SNP 236867 to 237467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,520 DEBUG Processing 157/672 atomic regions from SNP 46889 to 47489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,557 DEBUG Processing 479/740 atomic regions from SNP 143455 to 144055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,557 DEBUG Processing 612/755 atomic regions from SNP 183309 to 183909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,653 DEBUG Processing 14/730 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,737 DEBUG Processing 578/710 atomic regions from SNP 173265 to 173865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,738 DEBUG Processing 158/672 atomic regions from SNP 47189 to 47789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,749 DEBUG Processing 791/862 atomic regions from SNP 237167 to 237767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,809 DEBUG Processing 480/740 atomic regions from SNP 143755 to 144355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,811 DEBUG Processing 613/755 atomic regions from SNP 183609 to 184209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,877 DEBUG Processing 15/730 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,964 DEBUG Processing 159/672 atomic regions from SNP 47489 to 48089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,989 DEBUG Processing 579/710 atomic regions from SNP 173565 to 174165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,013 DEBUG Processing 792/862 atomic regions from SNP 237467 to 238067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,064 DEBUG Processing 481/740 atomic regions from SNP 144055 to 144655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,068 DEBUG Processing 614/755 atomic regions from SNP 183909 to 184509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,101 DEBUG Processing 16/730 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:41,187 DEBUG Processing 160/672 atomic regions from SNP 47789 to 48389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:41,234 DEBUG Processing 580/710 atomic regions from SNP 173865 to 174465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,276 DEBUG Processing 793/862 atomic regions from SNP 237767 to 238367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,324 DEBUG Processing 482/740 atomic regions from SNP 144355 to 144955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,325 DEBUG Processing 615/755 atomic regions from SNP 184209 to 184809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,327 DEBUG Processing 17/730 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:41,415 DEBUG Processing 161/672 atomic regions from SNP 48089 to 48689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:41,478 DEBUG Processing 581/710 atomic regions from SNP 174165 to 174765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,538 DEBUG Processing 794/862 atomic regions from SNP 238067 to 238667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,550 DEBUG Processing 18/730 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:41,573 DEBUG Processing 483/740 atomic regions from SNP 144655 to 145255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,579 DEBUG Processing 616/755 atomic regions from SNP 184509 to 185109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,660 DEBUG Processing 162/672 atomic regions from SNP 48389 to 48989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:41,724 DEBUG Processing 582/710 atomic regions from SNP 174465 to 175065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,769 DEBUG Processing 19/730 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:41,805 DEBUG Processing 795/862 atomic regions from SNP 238367 to 238967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,820 DEBUG Processing 484/740 atomic regions from SNP 144955 to 145555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,835 DEBUG Processing 617/755 atomic regions from SNP 184809 to 185409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,895 DEBUG Processing 163/672 atomic regions from SNP 48689 to 49289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:41,964 DEBUG Processing 583/710 atomic regions from SNP 174765 to 175365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,984 DEBUG Processing 20/730 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,070 DEBUG Processing 485/740 atomic regions from SNP 145255 to 145855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,071 DEBUG Processing 796/862 atomic regions from SNP 238667 to 239267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,084 DEBUG Processing 618/755 atomic regions from SNP 185109 to 185709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,119 DEBUG Processing 164/672 atomic regions from SNP 48989 to 49589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:42,197 DEBUG Processing 21/730 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,201 DEBUG Processing 584/710 atomic regions from SNP 175065 to 175665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,329 DEBUG Processing 486/740 atomic regions from SNP 145555 to 146155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,341 DEBUG Processing 165/672 atomic regions from SNP 49289 to 49889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:42,343 DEBUG Processing 797/862 atomic regions from SNP 238967 to 239567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,344 DEBUG Processing 619/755 atomic regions from SNP 185409 to 186009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,413 DEBUG Processing 22/730 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,441 DEBUG Processing 585/710 atomic regions from SNP 175365 to 175965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,564 DEBUG Processing 166/672 atomic regions from SNP 49589 to 50189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:42,588 DEBUG Processing 487/740 atomic regions from SNP 145855 to 146455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,605 DEBUG Processing 620/755 atomic regions from SNP 185709 to 186309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,612 DEBUG Processing 798/862 atomic regions from SNP 239267 to 239867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,638 DEBUG Processing 23/730 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,687 DEBUG Processing 586/710 atomic regions from SNP 175665 to 176265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,781 DEBUG Processing 167/672 atomic regions from SNP 49889 to 50489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:42,842 DEBUG Processing 488/740 atomic regions from SNP 146155 to 146755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,868 DEBUG Processing 24/730 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,868 DEBUG Processing 621/755 atomic regions from SNP 186009 to 186609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,885 DEBUG Processing 799/862 atomic regions from SNP 239567 to 240167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,943 DEBUG Processing 587/710 atomic regions from SNP 175965 to 176565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,990 DEBUG Processing 168/672 atomic regions from SNP 50189 to 50789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:43,096 DEBUG Processing 489/740 atomic regions from SNP 146455 to 147055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,099 DEBUG Processing 25/730 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,129 DEBUG Processing 622/755 atomic regions from SNP 186309 to 186909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,158 DEBUG Processing 800/862 atomic regions from SNP 239867 to 240467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,204 DEBUG Processing 169/672 atomic regions from SNP 50489 to 51089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:43,220 DEBUG Processing 588/710 atomic regions from SNP 176265 to 176865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,329 DEBUG Processing 26/730 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,344 DEBUG Processing 490/740 atomic regions from SNP 146755 to 147355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,380 DEBUG Processing 623/755 atomic regions from SNP 186609 to 187209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,419 DEBUG Processing 170/672 atomic regions from SNP 50789 to 51389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:43,423 DEBUG Processing 801/862 atomic regions from SNP 240167 to 240767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,494 DEBUG Processing 589/710 atomic regions from SNP 176565 to 177165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,555 DEBUG Processing 27/730 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,601 DEBUG Processing 491/740 atomic regions from SNP 147055 to 147655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,626 DEBUG Processing 624/755 atomic regions from SNP 186909 to 187509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,631 DEBUG Processing 171/672 atomic regions from SNP 51089 to 51689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:43,683 DEBUG Processing 802/862 atomic regions from SNP 240467 to 241067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,760 DEBUG Processing 590/710 atomic regions from SNP 176865 to 177465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,782 DEBUG Processing 28/730 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,850 DEBUG Processing 172/672 atomic regions from SNP 51389 to 51989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:43,854 DEBUG Processing 492/740 atomic regions from SNP 147355 to 147955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,874 DEBUG Processing 625/755 atomic regions from SNP 187209 to 187809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,947 DEBUG Processing 803/862 atomic regions from SNP 240767 to 241367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,010 DEBUG Processing 29/730 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,030 DEBUG Processing 591/710 atomic regions from SNP 177165 to 177765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,069 DEBUG Processing 173/672 atomic regions from SNP 51689 to 52289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:44,100 DEBUG Processing 493/740 atomic regions from SNP 147655 to 148255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,124 DEBUG Processing 626/755 atomic regions from SNP 187509 to 188109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,215 DEBUG Processing 804/862 atomic regions from SNP 241067 to 241667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,237 DEBUG Processing 30/730 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,286 DEBUG Processing 174/672 atomic regions from SNP 51989 to 52589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:44,299 DEBUG Processing 592/710 atomic regions from SNP 177465 to 178065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,342 DEBUG Processing 494/740 atomic regions from SNP 147955 to 148555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,371 DEBUG Processing 627/755 atomic regions from SNP 187809 to 188409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,465 DEBUG Processing 31/730 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,483 DEBUG Processing 805/862 atomic regions from SNP 241367 to 241967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,512 DEBUG Processing 175/672 atomic regions from SNP 52289 to 52889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:44,570 DEBUG Processing 593/710 atomic regions from SNP 177765 to 178365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,583 DEBUG Processing 495/740 atomic regions from SNP 148255 to 148855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,616 DEBUG Processing 628/755 atomic regions from SNP 188109 to 188709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,691 DEBUG Processing 32/730 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,749 DEBUG Processing 176/672 atomic regions from SNP 52589 to 53189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:44,749 DEBUG Processing 806/862 atomic regions from SNP 241667 to 242267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,834 DEBUG Processing 496/740 atomic regions from SNP 148555 to 149155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,856 DEBUG Processing 594/710 atomic regions from SNP 178065 to 178665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,866 DEBUG Processing 629/755 atomic regions from SNP 188409 to 189009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,913 DEBUG Processing 33/730 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,980 DEBUG Processing 177/672 atomic regions from SNP 52889 to 53489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:45,010 DEBUG Processing 807/862 atomic regions from SNP 241967 to 242567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,075 DEBUG Processing 497/740 atomic regions from SNP 148855 to 149455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,112 DEBUG Processing 630/755 atomic regions from SNP 188709 to 189309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,133 DEBUG Processing 34/730 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,133 DEBUG Processing 595/710 atomic regions from SNP 178365 to 178965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,200 DEBUG Processing 178/672 atomic regions from SNP 53189 to 53789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:45,267 DEBUG Processing 808/862 atomic regions from SNP 242267 to 242867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,315 DEBUG Processing 498/740 atomic regions from SNP 149155 to 149755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,353 DEBUG Processing 35/730 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,363 DEBUG Processing 631/755 atomic regions from SNP 189009 to 189609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,414 DEBUG Processing 596/710 atomic regions from SNP 178665 to 179265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,419 DEBUG Processing 179/672 atomic regions from SNP 53489 to 54089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:45,524 DEBUG Processing 809/862 atomic regions from SNP 242567 to 243167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,558 DEBUG Processing 499/740 atomic regions from SNP 149455 to 150055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,577 DEBUG Processing 36/730 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,612 DEBUG Processing 632/755 atomic regions from SNP 189309 to 189909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,637 DEBUG Processing 180/672 atomic regions from SNP 53789 to 54389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:45,703 DEBUG Processing 597/710 atomic regions from SNP 178965 to 179565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,782 DEBUG Processing 810/862 atomic regions from SNP 242867 to 243467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,799 DEBUG Processing 500/740 atomic regions from SNP 149755 to 150355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,803 DEBUG Processing 37/730 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,854 DEBUG Processing 181/672 atomic regions from SNP 54089 to 54689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:45,864 DEBUG Processing 633/755 atomic regions from SNP 189609 to 190209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,985 DEBUG Processing 598/710 atomic regions from SNP 179265 to 179865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,029 DEBUG Processing 38/730 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,042 DEBUG Processing 811/862 atomic regions from SNP 243167 to 243767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,046 DEBUG Processing 501/740 atomic regions from SNP 150055 to 150655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,071 DEBUG Processing 182/672 atomic regions from SNP 54389 to 54989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:46,113 DEBUG Processing 634/755 atomic regions from SNP 189909 to 190509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,254 DEBUG Processing 39/730 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,264 DEBUG Processing 599/710 atomic regions from SNP 179565 to 180165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,289 DEBUG Processing 183/672 atomic regions from SNP 54689 to 55289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:46,295 DEBUG Processing 502/740 atomic regions from SNP 150355 to 150955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,301 DEBUG Processing 812/862 atomic regions from SNP 243467 to 244067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,365 DEBUG Processing 635/755 atomic regions from SNP 190209 to 190809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,473 DEBUG Processing 40/730 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,506 DEBUG Processing 184/672 atomic regions from SNP 54989 to 55589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:46,547 DEBUG Processing 503/740 atomic regions from SNP 150655 to 151255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,548 DEBUG Processing 600/710 atomic regions from SNP 179865 to 180465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,567 DEBUG Processing 813/862 atomic regions from SNP 243767 to 244367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,616 DEBUG Processing 636/755 atomic regions from SNP 190509 to 191109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,695 DEBUG Processing 41/730 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,722 DEBUG Processing 185/672 atomic regions from SNP 55289 to 55889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:46,798 DEBUG Processing 504/740 atomic regions from SNP 150955 to 151555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,830 DEBUG Processing 601/710 atomic regions from SNP 180165 to 180765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,832 DEBUG Processing 814/862 atomic regions from SNP 244067 to 244667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,871 DEBUG Processing 637/755 atomic regions from SNP 190809 to 191409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,924 DEBUG Processing 42/730 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,943 DEBUG Processing 186/672 atomic regions from SNP 55589 to 56189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,047 DEBUG Processing 505/740 atomic regions from SNP 151255 to 151855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,096 DEBUG Processing 815/862 atomic regions from SNP 244367 to 244967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,116 DEBUG Processing 602/710 atomic regions from SNP 180465 to 181065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,129 DEBUG Processing 638/755 atomic regions from SNP 191109 to 191709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,155 DEBUG Processing 43/730 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,162 DEBUG Processing 187/672 atomic regions from SNP 55889 to 56489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,283 DEBUG Processing 506/740 atomic regions from SNP 151555 to 152155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,366 DEBUG Processing 816/862 atomic regions from SNP 244667 to 245267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,384 DEBUG Processing 188/672 atomic regions from SNP 56189 to 56789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,389 DEBUG Processing 44/730 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,396 DEBUG Processing 639/755 atomic regions from SNP 191409 to 192009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,415 DEBUG Processing 603/710 atomic regions from SNP 180765 to 181365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,508 DEBUG Processing 507/740 atomic regions from SNP 151855 to 152455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,621 DEBUG Processing 189/672 atomic regions from SNP 56489 to 57089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,635 DEBUG Processing 45/730 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,645 DEBUG Processing 817/862 atomic regions from SNP 244967 to 245567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,661 DEBUG Processing 640/755 atomic regions from SNP 191709 to 192309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,699 DEBUG Processing 604/710 atomic regions from SNP 181065 to 181665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,745 DEBUG Processing 508/740 atomic regions from SNP 152155 to 152755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,846 DEBUG Processing 190/672 atomic regions from SNP 56789 to 57389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,870 DEBUG Processing 46/730 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,914 DEBUG Processing 818/862 atomic regions from SNP 245267 to 245867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,921 DEBUG Processing 641/755 atomic regions from SNP 192009 to 192609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,960 DEBUG Processing 605/710 atomic regions from SNP 181365 to 181965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,999 DEBUG Processing 509/740 atomic regions from SNP 152455 to 153055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,074 DEBUG Processing 191/672 atomic regions from SNP 57089 to 57689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:48,107 DEBUG Processing 47/730 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,174 DEBUG Processing 642/755 atomic regions from SNP 192309 to 192909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,175 DEBUG Processing 819/862 atomic regions from SNP 245567 to 246167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,232 DEBUG Processing 606/710 atomic regions from SNP 181665 to 182265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,247 DEBUG Processing 510/740 atomic regions from SNP 152755 to 153355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,299 DEBUG Processing 192/672 atomic regions from SNP 57389 to 57989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:48,343 DEBUG Processing 48/730 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,431 DEBUG Processing 643/755 atomic regions from SNP 192609 to 193209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,442 DEBUG Processing 820/862 atomic regions from SNP 245867 to 246467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,494 DEBUG Processing 511/740 atomic regions from SNP 153055 to 153655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,511 DEBUG Processing 607/710 atomic regions from SNP 181965 to 182565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,517 DEBUG Processing 193/672 atomic regions from SNP 57689 to 58289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:48,571 DEBUG Processing 49/730 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,688 DEBUG Processing 644/755 atomic regions from SNP 192909 to 193509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,707 DEBUG Processing 821/862 atomic regions from SNP 246167 to 246767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,730 DEBUG Processing 194/672 atomic regions from SNP 57989 to 58589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:48,738 DEBUG Processing 512/740 atomic regions from SNP 153355 to 153955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,781 DEBUG Processing 608/710 atomic regions from SNP 182265 to 182865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,792 DEBUG Processing 50/730 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,940 DEBUG Processing 645/755 atomic regions from SNP 193209 to 193809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,945 DEBUG Processing 195/672 atomic regions from SNP 58289 to 58889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:48,965 DEBUG Processing 822/862 atomic regions from SNP 246467 to 247067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,980 DEBUG Processing 513/740 atomic regions from SNP 153655 to 154255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,020 DEBUG Processing 51/730 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,042 DEBUG Processing 609/710 atomic regions from SNP 182565 to 183165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,159 DEBUG Processing 196/672 atomic regions from SNP 58589 to 59189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:49,186 DEBUG Processing 646/755 atomic regions from SNP 193509 to 194109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,226 DEBUG Processing 514/740 atomic regions from SNP 153955 to 154555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,228 DEBUG Processing 823/862 atomic regions from SNP 246767 to 247367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,247 DEBUG Processing 52/730 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,292 DEBUG Processing 610/710 atomic regions from SNP 182865 to 183465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,366 DEBUG Processing 197/672 atomic regions from SNP 58889 to 59489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:49,436 DEBUG Processing 647/755 atomic regions from SNP 193809 to 194409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,472 DEBUG Processing 53/730 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,475 DEBUG Processing 515/740 atomic regions from SNP 154255 to 154855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,488 DEBUG Processing 824/862 atomic regions from SNP 247067 to 247667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,544 DEBUG Processing 611/710 atomic regions from SNP 183165 to 183765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,579 DEBUG Processing 198/672 atomic regions from SNP 59189 to 59789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:49,686 DEBUG Processing 648/755 atomic regions from SNP 194109 to 194709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,701 DEBUG Processing 54/730 atomic regions from SNP 15953 to 16554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,729 DEBUG Processing 516/740 atomic regions from SNP 154555 to 155155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,757 DEBUG Processing 825/862 atomic regions from SNP 247367 to 247967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,799 DEBUG Processing 612/710 atomic regions from SNP 183465 to 184065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,811 DEBUG Processing 199/672 atomic regions from SNP 59489 to 60089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:49,931 DEBUG Processing 55/730 atomic regions from SNP 16254 to 16855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,940 DEBUG Processing 649/755 atomic regions from SNP 194409 to 195009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,984 DEBUG Processing 517/740 atomic regions from SNP 154855 to 155455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,023 DEBUG Processing 826/862 atomic regions from SNP 247667 to 248267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,051 DEBUG Processing 613/710 atomic regions from SNP 183765 to 184365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,055 DEBUG Processing 200/672 atomic regions from SNP 59789 to 60389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:50,158 DEBUG Processing 56/730 atomic regions from SNP 16555 to 17156 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,184 DEBUG Processing 650/755 atomic regions from SNP 194709 to 195309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,228 DEBUG Processing 518/740 atomic regions from SNP 155155 to 155755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,273 DEBUG Processing 201/672 atomic regions from SNP 60089 to 60689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:50,279 DEBUG Processing 827/862 atomic regions from SNP 247967 to 248567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,292 DEBUG Processing 614/710 atomic regions from SNP 184065 to 184665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,380 DEBUG Processing 57/730 atomic regions from SNP 16856 to 17457 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,428 DEBUG Processing 651/755 atomic regions from SNP 195009 to 195609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,473 DEBUG Processing 519/740 atomic regions from SNP 155455 to 156055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,490 DEBUG Processing 202/672 atomic regions from SNP 60389 to 60989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:50,537 DEBUG Processing 828/862 atomic regions from SNP 248267 to 248867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,542 DEBUG Processing 615/710 atomic regions from SNP 184365 to 184965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,600 DEBUG Processing 58/730 atomic regions from SNP 17157 to 17758 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,672 DEBUG Processing 652/755 atomic regions from SNP 195309 to 195909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,709 DEBUG Processing 520/740 atomic regions from SNP 155755 to 156355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,710 DEBUG Processing 203/672 atomic regions from SNP 60689 to 61289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:50,792 DEBUG Processing 616/710 atomic regions from SNP 184665 to 185265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,796 DEBUG Processing 829/862 atomic regions from SNP 248567 to 249167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,820 DEBUG Processing 59/730 atomic regions from SNP 17458 to 18059 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,912 DEBUG Processing 653/755 atomic regions from SNP 195609 to 196209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,926 DEBUG Processing 204/672 atomic regions from SNP 60989 to 61589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:50,949 DEBUG Processing 521/740 atomic regions from SNP 156055 to 156655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,044 DEBUG Processing 60/730 atomic regions from SNP 17759 to 18360 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:51,044 DEBUG Processing 617/710 atomic regions from SNP 184965 to 185565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,055 DEBUG Processing 830/862 atomic regions from SNP 248867 to 249467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,146 DEBUG Processing 205/672 atomic regions from SNP 61289 to 61889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:51,152 DEBUG Processing 654/755 atomic regions from SNP 195909 to 196509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,188 DEBUG Processing 522/740 atomic regions from SNP 156355 to 156955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,274 DEBUG Processing 61/730 atomic regions from SNP 18060 to 18661 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:51,293 DEBUG Processing 618/710 atomic regions from SNP 185265 to 185865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,313 DEBUG Processing 831/862 atomic regions from SNP 249167 to 249767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,360 DEBUG Processing 206/672 atomic regions from SNP 61589 to 62189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:51,397 DEBUG Processing 655/755 atomic regions from SNP 196209 to 196809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,426 DEBUG Processing 523/740 atomic regions from SNP 156655 to 157255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,503 DEBUG Processing 62/730 atomic regions from SNP 18361 to 18962 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:51,541 DEBUG Processing 619/710 atomic regions from SNP 185565 to 186165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,571 DEBUG Processing 832/862 atomic regions from SNP 249467 to 250067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,575 DEBUG Processing 207/672 atomic regions from SNP 61889 to 62489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:51,642 DEBUG Processing 656/755 atomic regions from SNP 196509 to 197109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,667 DEBUG Processing 524/740 atomic regions from SNP 156955 to 157555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,721 DEBUG Processing 63/730 atomic regions from SNP 18662 to 19263 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:51,794 DEBUG Processing 208/672 atomic regions from SNP 62189 to 62789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:51,795 DEBUG Processing 620/710 atomic regions from SNP 185865 to 186465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,828 DEBUG Processing 833/862 atomic regions from SNP 249767 to 250367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,888 DEBUG Processing 657/755 atomic regions from SNP 196809 to 197409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,906 DEBUG Processing 525/740 atomic regions from SNP 157255 to 157855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,948 DEBUG Processing 64/730 atomic regions from SNP 18963 to 19564 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:52,024 DEBUG Processing 209/672 atomic regions from SNP 62489 to 63089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:52,063 DEBUG Processing 621/710 atomic regions from SNP 186165 to 186765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,091 DEBUG Processing 834/862 atomic regions from SNP 250067 to 250667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,138 DEBUG Processing 658/755 atomic regions from SNP 197109 to 197709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,158 DEBUG Processing 526/740 atomic regions from SNP 157555 to 158155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,185 DEBUG Processing 65/730 atomic regions from SNP 19264 to 19865 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:52,261 DEBUG Processing 210/672 atomic regions from SNP 62789 to 63389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:52,333 DEBUG Processing 622/710 atomic regions from SNP 186465 to 187065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,353 DEBUG Processing 835/862 atomic regions from SNP 250367 to 250967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,386 DEBUG Processing 659/755 atomic regions from SNP 197409 to 198009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,410 DEBUG Processing 66/730 atomic regions from SNP 19565 to 20166 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:52,417 DEBUG Processing 527/740 atomic regions from SNP 157855 to 158455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,494 DEBUG Processing 211/672 atomic regions from SNP 63089 to 63689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:52,589 DEBUG Processing 623/710 atomic regions from SNP 186765 to 187365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,611 DEBUG Processing 836/862 atomic regions from SNP 250667 to 251267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,638 DEBUG Processing 660/755 atomic regions from SNP 197709 to 198309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,639 DEBUG Processing 67/730 atomic regions from SNP 19866 to 20467 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:52,694 DEBUG Processing 528/740 atomic regions from SNP 158155 to 158755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,717 DEBUG Processing 212/672 atomic regions from SNP 63389 to 63989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:52,838 DEBUG Processing 624/710 atomic regions from SNP 187065 to 187665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,868 DEBUG Processing 68/730 atomic regions from SNP 20167 to 20768 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:52,871 DEBUG Processing 837/862 atomic regions from SNP 250967 to 251567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,892 DEBUG Processing 661/755 atomic regions from SNP 198009 to 198609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,942 DEBUG Processing 213/672 atomic regions from SNP 63689 to 64289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:52,967 DEBUG Processing 529/740 atomic regions from SNP 158455 to 159055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,081 DEBUG Processing 625/710 atomic regions from SNP 187365 to 187965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,110 DEBUG Processing 69/730 atomic regions from SNP 20468 to 21069 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:53,130 DEBUG Processing 838/862 atomic regions from SNP 251267 to 251867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,145 DEBUG Processing 662/755 atomic regions from SNP 198309 to 198909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,171 DEBUG Processing 214/672 atomic regions from SNP 63989 to 64589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:53,235 DEBUG Processing 530/740 atomic regions from SNP 158755 to 159355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,327 DEBUG Processing 626/710 atomic regions from SNP 187665 to 188265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,348 DEBUG Processing 70/730 atomic regions from SNP 20769 to 21370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:53,391 DEBUG Processing 839/862 atomic regions from SNP 251567 to 252167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,401 DEBUG Processing 215/672 atomic regions from SNP 64289 to 64889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:53,402 DEBUG Processing 663/755 atomic regions from SNP 198609 to 199209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,504 DEBUG Processing 531/740 atomic regions from SNP 159055 to 159655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,574 DEBUG Processing 627/710 atomic regions from SNP 187965 to 188565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,577 DEBUG Processing 71/730 atomic regions from SNP 21070 to 21670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:53,629 DEBUG Processing 216/672 atomic regions from SNP 64589 to 65189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:53,650 DEBUG Processing 664/755 atomic regions from SNP 198909 to 199509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,652 DEBUG Processing 840/862 atomic regions from SNP 251867 to 252467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,781 DEBUG Processing 532/740 atomic regions from SNP 159355 to 159955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,809 DEBUG Processing 72/730 atomic regions from SNP 21370 to 21970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:53,821 DEBUG Processing 628/710 atomic regions from SNP 188265 to 188865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,859 DEBUG Processing 217/672 atomic regions from SNP 64889 to 65489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:53,911 DEBUG Processing 665/755 atomic regions from SNP 199209 to 199809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,913 DEBUG Processing 841/862 atomic regions from SNP 252167 to 252767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,043 DEBUG Processing 73/730 atomic regions from SNP 21670 to 22270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:54,057 DEBUG Processing 533/740 atomic regions from SNP 159655 to 160255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,068 DEBUG Processing 629/710 atomic regions from SNP 188565 to 189165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,097 DEBUG Processing 218/672 atomic regions from SNP 65189 to 65789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:54,166 DEBUG Processing 666/755 atomic regions from SNP 199509 to 200109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,178 DEBUG Processing 842/862 atomic regions from SNP 252467 to 253067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,275 DEBUG Processing 74/730 atomic regions from SNP 21970 to 22570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:54,313 DEBUG Processing 630/710 atomic regions from SNP 188865 to 189465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,320 DEBUG Processing 534/740 atomic regions from SNP 159955 to 160555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,332 DEBUG Processing 219/672 atomic regions from SNP 65489 to 66089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:54,426 DEBUG Processing 667/755 atomic regions from SNP 199809 to 200409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,447 DEBUG Processing 843/862 atomic regions from SNP 252767 to 253367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,511 DEBUG Processing 75/730 atomic regions from SNP 22270 to 22870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:54,564 DEBUG Processing 631/710 atomic regions from SNP 189165 to 189765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,579 DEBUG Processing 220/672 atomic regions from SNP 65789 to 66389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:54,592 DEBUG Processing 535/740 atomic regions from SNP 160255 to 160855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,679 DEBUG Processing 668/755 atomic regions from SNP 200109 to 200709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,707 DEBUG Processing 844/862 atomic regions from SNP 253067 to 253667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,743 DEBUG Processing 76/730 atomic regions from SNP 22570 to 23170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:54,815 DEBUG Processing 221/672 atomic regions from SNP 66089 to 66689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:54,823 DEBUG Processing 632/710 atomic regions from SNP 189465 to 190065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,854 DEBUG Processing 536/740 atomic regions from SNP 160555 to 161155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,929 DEBUG Processing 669/755 atomic regions from SNP 200409 to 201009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,967 DEBUG Processing 845/862 atomic regions from SNP 253367 to 253967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,975 DEBUG Processing 77/730 atomic regions from SNP 22870 to 23470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:55,059 DEBUG Processing 222/672 atomic regions from SNP 66389 to 66989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,098 DEBUG Processing 633/710 atomic regions from SNP 189765 to 190365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,108 DEBUG Processing 537/740 atomic regions from SNP 160855 to 161455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,177 DEBUG Processing 670/755 atomic regions from SNP 200709 to 201309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,208 DEBUG Processing 78/730 atomic regions from SNP 23170 to 23770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:55,238 DEBUG Processing 846/862 atomic regions from SNP 253667 to 254267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,302 DEBUG Processing 223/672 atomic regions from SNP 66689 to 67289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,369 DEBUG Processing 634/710 atomic regions from SNP 190065 to 190665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,371 DEBUG Processing 538/740 atomic regions from SNP 161155 to 161755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,420 DEBUG Processing 671/755 atomic regions from SNP 201009 to 201609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,434 DEBUG Processing 79/730 atomic regions from SNP 23470 to 24070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:55,499 DEBUG Processing 847/862 atomic regions from SNP 253967 to 254567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,534 DEBUG Processing 224/672 atomic regions from SNP 66989 to 67589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,625 DEBUG Processing 539/740 atomic regions from SNP 161455 to 162055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,628 DEBUG Processing 635/710 atomic regions from SNP 190365 to 190965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,667 DEBUG Processing 80/730 atomic regions from SNP 23770 to 24370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:55,671 DEBUG Processing 672/755 atomic regions from SNP 201309 to 201909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,755 DEBUG Processing 848/862 atomic regions from SNP 254267 to 254867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,756 DEBUG Processing 225/672 atomic regions from SNP 67289 to 67889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,870 DEBUG Processing 540/740 atomic regions from SNP 161755 to 162355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,899 DEBUG Processing 636/710 atomic regions from SNP 190665 to 191265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,904 DEBUG Processing 81/730 atomic regions from SNP 24070 to 24670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:55,920 DEBUG Processing 673/755 atomic regions from SNP 201609 to 202209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,979 DEBUG Processing 226/672 atomic regions from SNP 67589 to 68189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,009 DEBUG Processing 849/862 atomic regions from SNP 254567 to 255167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,112 DEBUG Processing 541/740 atomic regions from SNP 162055 to 162655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,142 DEBUG Processing 82/730 atomic regions from SNP 24370 to 24970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:56,159 DEBUG Processing 637/710 atomic regions from SNP 190965 to 191565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,170 DEBUG Processing 674/755 atomic regions from SNP 201909 to 202509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,207 DEBUG Processing 227/672 atomic regions from SNP 67889 to 68489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,262 DEBUG Processing 850/862 atomic regions from SNP 254867 to 255467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,355 DEBUG Processing 542/740 atomic regions from SNP 162355 to 162955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,382 DEBUG Processing 83/730 atomic regions from SNP 24670 to 25270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:56,413 DEBUG Processing 638/710 atomic regions from SNP 191265 to 191865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,427 DEBUG Processing 675/755 atomic regions from SNP 202209 to 202809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,445 DEBUG Processing 228/672 atomic regions from SNP 68189 to 68789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,517 DEBUG Processing 851/862 atomic regions from SNP 255167 to 255767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,598 DEBUG Processing 543/740 atomic regions from SNP 162655 to 163255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,624 DEBUG Processing 84/730 atomic regions from SNP 24970 to 25570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:56,678 DEBUG Processing 639/710 atomic regions from SNP 191565 to 192165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,683 DEBUG Processing 229/672 atomic regions from SNP 68489 to 69089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,700 DEBUG Processing 676/755 atomic regions from SNP 202509 to 203109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,778 DEBUG Processing 852/862 atomic regions from SNP 255467 to 256067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,835 DEBUG Processing 544/740 atomic regions from SNP 162955 to 163555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,862 DEBUG Processing 85/730 atomic regions from SNP 25270 to 25870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:56,899 DEBUG Processing 230/672 atomic regions from SNP 68789 to 69389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,945 DEBUG Processing 640/710 atomic regions from SNP 191865 to 192465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,959 DEBUG Processing 677/755 atomic regions from SNP 202809 to 203409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,032 DEBUG Processing 853/862 atomic regions from SNP 255767 to 256367 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,071 DEBUG Processing 545/740 atomic regions from SNP 163255 to 163855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,098 DEBUG Processing 86/730 atomic regions from SNP 25570 to 26170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:57,121 DEBUG Processing 231/672 atomic regions from SNP 69089 to 69689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,201 DEBUG Processing 641/710 atomic regions from SNP 192165 to 192765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,210 DEBUG Processing 678/755 atomic regions from SNP 203109 to 203709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,294 DEBUG Processing 854/862 atomic regions from SNP 256067 to 256667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,321 DEBUG Processing 546/740 atomic regions from SNP 163555 to 164155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,338 DEBUG Processing 87/730 atomic regions from SNP 25870 to 26470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:57,349 DEBUG Processing 232/672 atomic regions from SNP 69389 to 69989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,449 DEBUG Processing 642/710 atomic regions from SNP 192465 to 193065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,461 DEBUG Processing 679/755 atomic regions from SNP 203409 to 204009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,559 DEBUG Processing 855/862 atomic regions from SNP 256367 to 256967 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,574 DEBUG Processing 547/740 atomic regions from SNP 163855 to 164455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,575 DEBUG Processing 88/730 atomic regions from SNP 26170 to 26770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:57,579 DEBUG Processing 233/672 atomic regions from SNP 69689 to 70289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,692 DEBUG Processing 643/710 atomic regions from SNP 192765 to 193365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,729 DEBUG Processing 680/755 atomic regions from SNP 203709 to 204309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,815 DEBUG Processing 234/672 atomic regions from SNP 69989 to 70589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,821 DEBUG Processing 89/730 atomic regions from SNP 26470 to 27070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:57,828 DEBUG Processing 856/862 atomic regions from SNP 256667 to 257267 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,832 DEBUG Processing 548/740 atomic regions from SNP 164155 to 164755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,933 DEBUG Processing 644/710 atomic regions from SNP 193065 to 193665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,980 DEBUG Processing 681/755 atomic regions from SNP 204009 to 204609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,044 DEBUG Processing 235/672 atomic regions from SNP 70289 to 70889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,060 DEBUG Processing 90/730 atomic regions from SNP 26770 to 27370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:58,086 DEBUG Processing 549/740 atomic regions from SNP 164455 to 165055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,093 DEBUG Processing 857/862 atomic regions from SNP 256967 to 257567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,177 DEBUG Processing 645/710 atomic regions from SNP 193365 to 193965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,216 DEBUG Processing 682/755 atomic regions from SNP 204309 to 204909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,270 DEBUG Processing 236/672 atomic regions from SNP 70589 to 71189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,301 DEBUG Processing 91/730 atomic regions from SNP 27070 to 27670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:58,344 DEBUG Processing 550/740 atomic regions from SNP 164755 to 165355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,370 DEBUG Processing 858/862 atomic regions from SNP 257267 to 257867 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,426 DEBUG Processing 646/710 atomic regions from SNP 193665 to 194265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,453 DEBUG Processing 683/755 atomic regions from SNP 204609 to 205209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,487 DEBUG Processing 237/672 atomic regions from SNP 70889 to 71489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,539 DEBUG Processing 92/730 atomic regions from SNP 27370 to 27970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:58,601 DEBUG Processing 551/740 atomic regions from SNP 165055 to 165655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,641 DEBUG Processing 859/862 atomic regions from SNP 257567 to 258167 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,674 DEBUG Processing 647/710 atomic regions from SNP 193965 to 194565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,689 DEBUG Processing 684/755 atomic regions from SNP 204909 to 205509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,700 DEBUG Processing 238/672 atomic regions from SNP 71189 to 71789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,772 DEBUG Processing 93/730 atomic regions from SNP 27670 to 28270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:58,861 DEBUG Processing 552/740 atomic regions from SNP 165355 to 165955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,913 DEBUG Processing 860/862 atomic regions from SNP 257867 to 258467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,920 DEBUG Processing 239/672 atomic regions from SNP 71489 to 72089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,927 DEBUG Processing 648/710 atomic regions from SNP 194265 to 194865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,937 DEBUG Processing 685/755 atomic regions from SNP 205209 to 205809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,003 DEBUG Processing 94/730 atomic regions from SNP 27970 to 28570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:59,116 DEBUG Processing 553/740 atomic regions from SNP 165655 to 166255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,143 DEBUG Processing 240/672 atomic regions from SNP 71789 to 72389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,179 DEBUG Processing 649/710 atomic regions from SNP 194565 to 195165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,182 DEBUG Processing 861/862 atomic regions from SNP 258167 to 258767 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,186 DEBUG Processing 686/755 atomic regions from SNP 205509 to 206109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,232 DEBUG Processing 95/730 atomic regions from SNP 28270 to 28870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:59,368 DEBUG Processing 241/672 atomic regions from SNP 72089 to 72689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,371 DEBUG Processing 554/740 atomic regions from SNP 165955 to 166555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,435 DEBUG Processing 650/710 atomic regions from SNP 194865 to 195465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,438 DEBUG Processing 687/755 atomic regions from SNP 205809 to 206409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,452 DEBUG Processing 862/862 atomic regions from SNP 258467 to 259067 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,462 DEBUG Processing 96/730 atomic regions from SNP 28570 to 29170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:59,603 DEBUG Unique SNPs positions in subchromosome 1: 259068 2025-01-31 09:50:59,608 DEBUG Processing 242/672 atomic regions from SNP 72389 to 72989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,620 DEBUG Processing 555/740 atomic regions from SNP 166255 to 166855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,687 DEBUG Processing 651/710 atomic regions from SNP 195165 to 195765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,696 DEBUG Processing 97/730 atomic regions from SNP 28870 to 29470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:59,697 DEBUG Processing 688/755 atomic regions from SNP 206109 to 206709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,855 DEBUG Processing 243/672 atomic regions from SNP 72689 to 73289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,869 DEBUG Processing 556/740 atomic regions from SNP 166555 to 167155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,925 DEBUG Processing 98/730 atomic regions from SNP 29170 to 29770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:59,939 DEBUG Processing 689/755 atomic regions from SNP 206409 to 207009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,944 DEBUG Processing 652/710 atomic regions from SNP 195465 to 196065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,100 DEBUG Processing 244/672 atomic regions from SNP 72989 to 73589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,120 DEBUG Processing 557/740 atomic regions from SNP 166855 to 167455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,152 DEBUG Processing 99/730 atomic regions from SNP 29470 to 30070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:00,183 DEBUG Processing 690/755 atomic regions from SNP 206709 to 207309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,202 DEBUG Processing 653/710 atomic regions from SNP 195765 to 196365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,320 DEBUG Processing 245/672 atomic regions from SNP 73289 to 73889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,364 DEBUG Processing 558/740 atomic regions from SNP 167155 to 167755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,375 DEBUG Processing 100/730 atomic regions from SNP 29770 to 30370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:00,425 DEBUG Processing 691/755 atomic regions from SNP 207009 to 207609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,450 DEBUG Processing 654/710 atomic regions from SNP 196065 to 196665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,541 DEBUG Processing 246/672 atomic regions from SNP 73589 to 74189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,604 DEBUG Processing 559/740 atomic regions from SNP 167455 to 168055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,611 DEBUG Processing 101/730 atomic regions from SNP 30070 to 30670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:00,670 DEBUG Processing 692/755 atomic regions from SNP 207309 to 207909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,701 DEBUG Processing 655/710 atomic regions from SNP 196365 to 196965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,760 DEBUG Processing 247/672 atomic regions from SNP 73889 to 74489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,847 DEBUG Processing 560/740 atomic regions from SNP 167755 to 168355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,861 DEBUG Processing 102/730 atomic regions from SNP 30370 to 30970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:00,919 DEBUG Processing 693/755 atomic regions from SNP 207609 to 208209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,958 DEBUG Processing 656/710 atomic regions from SNP 196665 to 197265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,004 DEBUG Processing 248/672 atomic regions from SNP 74189 to 74789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,087 DEBUG Processing 561/740 atomic regions from SNP 168055 to 168655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,118 DEBUG Processing 103/730 atomic regions from SNP 30670 to 31270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:01,161 DEBUG Processing 694/755 atomic regions from SNP 207909 to 208509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,212 DEBUG Processing 657/710 atomic regions from SNP 196965 to 197565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,248 DEBUG Processing 249/672 atomic regions from SNP 74489 to 75089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,336 DEBUG Processing 562/740 atomic regions from SNP 168355 to 168955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,377 DEBUG Processing 104/730 atomic regions from SNP 30970 to 31570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:01,404 DEBUG Processing 695/755 atomic regions from SNP 208209 to 208809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,457 DEBUG Processing 658/710 atomic regions from SNP 197265 to 197865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,493 DEBUG Processing 250/672 atomic regions from SNP 74789 to 75389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,582 DEBUG Processing 563/740 atomic regions from SNP 168655 to 169255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,628 DEBUG Processing 105/730 atomic regions from SNP 31270 to 31870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:01,642 DEBUG Processing 696/755 atomic regions from SNP 208509 to 209109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,692 DEBUG Processing 659/710 atomic regions from SNP 197565 to 198165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,721 DEBUG Processing 251/672 atomic regions from SNP 75089 to 75689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,829 DEBUG Processing 564/740 atomic regions from SNP 168955 to 169555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,874 DEBUG Processing 106/730 atomic regions from SNP 31570 to 32170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:01,885 DEBUG Processing 697/755 atomic regions from SNP 208809 to 209409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,933 DEBUG Processing 660/710 atomic regions from SNP 197865 to 198465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,936 DEBUG Processing 252/672 atomic regions from SNP 75389 to 75989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,075 DEBUG Processing 565/740 atomic regions from SNP 169255 to 169855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,119 DEBUG Processing 107/730 atomic regions from SNP 31870 to 32470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:02,130 DEBUG Processing 698/755 atomic regions from SNP 209109 to 209709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,152 DEBUG Processing 253/672 atomic regions from SNP 75689 to 76289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,177 DEBUG Processing 661/710 atomic regions from SNP 198165 to 198765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,326 DEBUG Processing 566/740 atomic regions from SNP 169555 to 170155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,366 DEBUG Processing 108/730 atomic regions from SNP 32170 to 32770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:02,369 DEBUG Processing 254/672 atomic regions from SNP 75989 to 76589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,382 DEBUG Processing 699/755 atomic regions from SNP 209409 to 210009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,420 DEBUG Processing 662/710 atomic regions from SNP 198465 to 199065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,578 DEBUG Processing 567/740 atomic regions from SNP 169855 to 170455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,590 DEBUG Processing 255/672 atomic regions from SNP 76289 to 76889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,625 DEBUG Processing 109/730 atomic regions from SNP 32470 to 33070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:02,631 DEBUG Processing 700/755 atomic regions from SNP 209709 to 210309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,661 DEBUG Processing 663/710 atomic regions from SNP 198765 to 199365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,803 DEBUG Processing 256/672 atomic regions from SNP 76589 to 77189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,825 DEBUG Processing 568/740 atomic regions from SNP 170155 to 170755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,873 DEBUG Processing 701/755 atomic regions from SNP 210009 to 210609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,879 DEBUG Processing 110/730 atomic regions from SNP 32770 to 33370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:02,901 DEBUG Processing 664/710 atomic regions from SNP 199065 to 199665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,034 DEBUG Processing 257/672 atomic regions from SNP 76889 to 77489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,069 DEBUG Processing 569/740 atomic regions from SNP 170455 to 171055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,116 DEBUG Processing 111/730 atomic regions from SNP 33070 to 33670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:03,118 DEBUG Processing 702/755 atomic regions from SNP 210309 to 210909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,149 DEBUG Processing 665/710 atomic regions from SNP 199365 to 199965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,260 DEBUG Processing 258/672 atomic regions from SNP 77189 to 77789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,303 DEBUG Processing 570/740 atomic regions from SNP 170755 to 171355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,340 DEBUG Processing 112/730 atomic regions from SNP 33370 to 33970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:03,366 DEBUG Processing 703/755 atomic regions from SNP 210609 to 211209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,404 DEBUG Processing 666/710 atomic regions from SNP 199665 to 200265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,495 DEBUG Processing 259/672 atomic regions from SNP 77489 to 78089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,534 DEBUG Processing 571/740 atomic regions from SNP 171055 to 171655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,559 DEBUG Processing 113/730 atomic regions from SNP 33670 to 34270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:03,615 DEBUG Processing 704/755 atomic regions from SNP 210909 to 211509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,655 DEBUG Processing 667/710 atomic regions from SNP 199965 to 200565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,739 DEBUG Processing 260/672 atomic regions from SNP 77789 to 78389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,767 DEBUG Processing 572/740 atomic regions from SNP 171355 to 171955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,773 DEBUG Processing 114/730 atomic regions from SNP 33970 to 34570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:03,866 DEBUG Processing 705/755 atomic regions from SNP 211209 to 211809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,910 DEBUG Processing 668/710 atomic regions from SNP 200265 to 200865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,976 DEBUG Processing 261/672 atomic regions from SNP 78089 to 78689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,987 DEBUG Processing 115/730 atomic regions from SNP 34270 to 34870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:03,995 DEBUG Processing 573/740 atomic regions from SNP 171655 to 172255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,109 DEBUG Processing 706/755 atomic regions from SNP 211509 to 212109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,161 DEBUG Processing 669/710 atomic regions from SNP 200565 to 201165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,205 DEBUG Processing 116/730 atomic regions from SNP 34570 to 35170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:04,213 DEBUG Processing 262/672 atomic regions from SNP 78389 to 78989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,228 DEBUG Processing 574/740 atomic regions from SNP 171955 to 172555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,353 DEBUG Processing 707/755 atomic regions from SNP 211809 to 212409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,416 DEBUG Processing 670/710 atomic regions from SNP 200865 to 201465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,424 DEBUG Processing 117/730 atomic regions from SNP 34870 to 35470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:04,459 DEBUG Processing 263/672 atomic regions from SNP 78689 to 79289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,469 DEBUG Processing 575/740 atomic regions from SNP 172255 to 172855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,600 DEBUG Processing 708/755 atomic regions from SNP 212109 to 212709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,644 DEBUG Processing 118/730 atomic regions from SNP 35170 to 35770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:04,671 DEBUG Processing 671/710 atomic regions from SNP 201165 to 201765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,692 DEBUG Processing 264/672 atomic regions from SNP 78989 to 79589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,716 DEBUG Processing 576/740 atomic regions from SNP 172555 to 173155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,844 DEBUG Processing 709/755 atomic regions from SNP 212409 to 213009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,863 DEBUG Processing 119/730 atomic regions from SNP 35470 to 36070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:04,921 DEBUG Processing 265/672 atomic regions from SNP 79289 to 79889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,927 DEBUG Processing 672/710 atomic regions from SNP 201465 to 202065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,958 DEBUG Processing 577/740 atomic regions from SNP 172855 to 173455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,081 DEBUG Processing 120/730 atomic regions from SNP 35770 to 36370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:05,090 DEBUG Processing 710/755 atomic regions from SNP 212709 to 213309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,169 DEBUG Processing 266/672 atomic regions from SNP 79589 to 80189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,179 DEBUG Processing 673/710 atomic regions from SNP 201765 to 202365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,204 DEBUG Processing 578/740 atomic regions from SNP 173155 to 173755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,297 DEBUG Processing 121/730 atomic regions from SNP 36070 to 36670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:05,339 DEBUG Processing 711/755 atomic regions from SNP 213009 to 213609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,413 DEBUG Processing 267/672 atomic regions from SNP 79889 to 80489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,430 DEBUG Processing 674/710 atomic regions from SNP 202065 to 202665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,449 DEBUG Processing 579/740 atomic regions from SNP 173455 to 174055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,511 DEBUG Processing 122/730 atomic regions from SNP 36370 to 36970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:05,587 DEBUG Processing 712/755 atomic regions from SNP 213309 to 213909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,655 DEBUG Processing 268/672 atomic regions from SNP 80189 to 80789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,687 DEBUG Processing 675/710 atomic regions from SNP 202365 to 202965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,701 DEBUG Processing 580/740 atomic regions from SNP 173755 to 174355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,735 DEBUG Processing 123/730 atomic regions from SNP 36670 to 37270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:05,835 DEBUG Processing 713/755 atomic regions from SNP 213609 to 214209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,880 DEBUG Processing 269/672 atomic regions from SNP 80489 to 81089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,943 DEBUG Processing 676/710 atomic regions from SNP 202665 to 203265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,951 DEBUG Processing 581/740 atomic regions from SNP 174055 to 174655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,956 DEBUG Processing 124/730 atomic regions from SNP 36970 to 37570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:06,082 DEBUG Processing 714/755 atomic regions from SNP 213909 to 214509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,095 DEBUG Processing 270/672 atomic regions from SNP 80789 to 81389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,168 DEBUG Processing 125/730 atomic regions from SNP 37270 to 37870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:06,193 DEBUG Processing 677/710 atomic regions from SNP 202965 to 203565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,196 DEBUG Processing 582/740 atomic regions from SNP 174355 to 174955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,308 DEBUG Processing 271/672 atomic regions from SNP 81089 to 81689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,332 DEBUG Processing 715/755 atomic regions from SNP 214209 to 214809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,386 DEBUG Processing 126/730 atomic regions from SNP 37570 to 38170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:06,441 DEBUG Processing 583/740 atomic regions from SNP 174655 to 175255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,441 DEBUG Processing 678/710 atomic regions from SNP 203265 to 203865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,538 DEBUG Processing 272/672 atomic regions from SNP 81389 to 81989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,582 DEBUG Processing 716/755 atomic regions from SNP 214509 to 215109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,605 DEBUG Processing 127/730 atomic regions from SNP 37870 to 38470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:06,686 DEBUG Processing 584/740 atomic regions from SNP 174955 to 175555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,702 DEBUG Processing 679/710 atomic regions from SNP 203565 to 204165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,757 DEBUG Processing 273/672 atomic regions from SNP 81689 to 82289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,825 DEBUG Processing 128/730 atomic regions from SNP 38170 to 38770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:06,833 DEBUG Processing 717/755 atomic regions from SNP 214809 to 215409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,934 DEBUG Processing 585/740 atomic regions from SNP 175255 to 175855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,972 DEBUG Processing 680/710 atomic regions from SNP 203865 to 204465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,975 DEBUG Processing 274/672 atomic regions from SNP 81989 to 82589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,048 DEBUG Processing 129/730 atomic regions from SNP 38470 to 39070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:07,084 DEBUG Processing 718/755 atomic regions from SNP 215109 to 215709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,181 DEBUG Processing 586/740 atomic regions from SNP 175555 to 176155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,186 DEBUG Processing 275/672 atomic regions from SNP 82289 to 82889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,221 DEBUG Processing 681/710 atomic regions from SNP 204165 to 204765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,265 DEBUG Processing 130/730 atomic regions from SNP 38770 to 39370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:07,331 DEBUG Processing 719/755 atomic regions from SNP 215409 to 216009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,397 DEBUG Processing 276/672 atomic regions from SNP 82589 to 83189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,429 DEBUG Processing 587/740 atomic regions from SNP 175855 to 176455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,469 DEBUG Processing 682/710 atomic regions from SNP 204465 to 205065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,481 DEBUG Processing 131/730 atomic regions from SNP 39070 to 39670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:07,578 DEBUG Processing 720/755 atomic regions from SNP 215709 to 216309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,610 DEBUG Processing 277/672 atomic regions from SNP 82889 to 83489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,673 DEBUG Processing 588/740 atomic regions from SNP 176155 to 176755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,694 DEBUG Processing 132/730 atomic regions from SNP 39370 to 39970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:07,713 DEBUG Processing 683/710 atomic regions from SNP 204765 to 205365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,824 DEBUG Processing 721/755 atomic regions from SNP 216009 to 216609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,832 DEBUG Processing 278/672 atomic regions from SNP 83189 to 83789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,924 DEBUG Processing 589/740 atomic regions from SNP 176455 to 177055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,926 DEBUG Processing 133/730 atomic regions from SNP 39670 to 40270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:07,977 DEBUG Processing 684/710 atomic regions from SNP 205065 to 205665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,054 DEBUG Processing 279/672 atomic regions from SNP 83489 to 84089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,076 DEBUG Processing 722/755 atomic regions from SNP 216309 to 216909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,149 DEBUG Processing 134/730 atomic regions from SNP 39970 to 40570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:08,190 DEBUG Processing 590/740 atomic regions from SNP 176755 to 177355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,247 DEBUG Processing 685/710 atomic regions from SNP 205365 to 205965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,281 DEBUG Processing 280/672 atomic regions from SNP 83789 to 84389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,327 DEBUG Processing 723/755 atomic regions from SNP 216609 to 217209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,367 DEBUG Processing 135/730 atomic regions from SNP 40270 to 40870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:08,433 DEBUG Processing 591/740 atomic regions from SNP 177055 to 177655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,507 DEBUG Processing 281/672 atomic regions from SNP 84089 to 84689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,533 DEBUG Processing 686/710 atomic regions from SNP 205665 to 206265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,575 DEBUG Processing 724/755 atomic regions from SNP 216909 to 217509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,582 DEBUG Processing 136/730 atomic regions from SNP 40570 to 41170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:08,676 DEBUG Processing 592/740 atomic regions from SNP 177355 to 177955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,714 DEBUG Processing 282/672 atomic regions from SNP 84389 to 84989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,798 DEBUG Processing 137/730 atomic regions from SNP 40870 to 41470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:08,820 DEBUG Processing 687/710 atomic regions from SNP 205965 to 206565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,827 DEBUG Processing 725/755 atomic regions from SNP 217209 to 217809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,926 DEBUG Processing 283/672 atomic regions from SNP 84689 to 85289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,939 DEBUG Processing 593/740 atomic regions from SNP 177655 to 178255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,017 DEBUG Processing 138/730 atomic regions from SNP 41170 to 41770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:09,077 DEBUG Processing 726/755 atomic regions from SNP 217509 to 218109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,105 DEBUG Processing 688/710 atomic regions from SNP 206265 to 206865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,137 DEBUG Processing 284/672 atomic regions from SNP 84989 to 85589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,209 DEBUG Processing 594/740 atomic regions from SNP 177955 to 178555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,237 DEBUG Processing 139/730 atomic regions from SNP 41470 to 42070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:09,332 DEBUG Processing 727/755 atomic regions from SNP 217809 to 218409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,353 DEBUG Processing 285/672 atomic regions from SNP 85289 to 85889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,387 DEBUG Processing 689/710 atomic regions from SNP 206565 to 207165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,454 DEBUG Processing 140/730 atomic regions from SNP 41770 to 42370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:09,485 DEBUG Processing 595/740 atomic regions from SNP 178255 to 178855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,570 DEBUG Processing 286/672 atomic regions from SNP 85589 to 86189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,583 DEBUG Processing 728/755 atomic regions from SNP 218109 to 218709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,662 DEBUG Processing 690/710 atomic regions from SNP 206865 to 207465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,670 DEBUG Processing 141/730 atomic regions from SNP 42070 to 42670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:09,758 DEBUG Processing 596/740 atomic regions from SNP 178555 to 179155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,784 DEBUG Processing 287/672 atomic regions from SNP 85889 to 86489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,823 DEBUG Processing 729/755 atomic regions from SNP 218409 to 219009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,880 DEBUG Processing 142/730 atomic regions from SNP 42370 to 42970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:09,928 DEBUG Processing 691/710 atomic regions from SNP 207165 to 207765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,996 DEBUG Processing 288/672 atomic regions from SNP 86189 to 86789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,028 DEBUG Processing 597/740 atomic regions from SNP 178855 to 179455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,059 DEBUG Processing 730/755 atomic regions from SNP 218709 to 219309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,089 DEBUG Processing 143/730 atomic regions from SNP 42670 to 43270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,192 DEBUG Processing 692/710 atomic regions from SNP 207465 to 208065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,210 DEBUG Processing 289/672 atomic regions from SNP 86489 to 87089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,295 DEBUG Processing 731/755 atomic regions from SNP 219009 to 219609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,297 DEBUG Processing 598/740 atomic regions from SNP 179155 to 179755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,301 DEBUG Processing 144/730 atomic regions from SNP 42970 to 43570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,429 DEBUG Processing 290/672 atomic regions from SNP 86789 to 87389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,461 DEBUG Processing 693/710 atomic regions from SNP 207765 to 208365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,513 DEBUG Processing 145/730 atomic regions from SNP 43270 to 43870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,535 DEBUG Processing 732/755 atomic regions from SNP 219309 to 219909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,559 DEBUG Processing 599/740 atomic regions from SNP 179455 to 180055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,643 DEBUG Processing 291/672 atomic regions from SNP 87089 to 87689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,728 DEBUG Processing 146/730 atomic regions from SNP 43570 to 44170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,730 DEBUG Processing 694/710 atomic regions from SNP 208065 to 208665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,778 DEBUG Processing 733/755 atomic regions from SNP 219609 to 220209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,813 DEBUG Processing 600/740 atomic regions from SNP 179755 to 180355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,845 DEBUG Subchromosome time: 266.2645484620007, subchromosome SNPs: 259068 2025-01-31 09:51:10,846 DEBUG Estimated BADs: [1.24, 0.62, 2.48, 1.24, 2.48, 1.24, 0.31, 1.24, 0.62, 2.48, 1.24, 0.41, 1.24, 2.48, 1.24, 0.41, 0.62, 2.48, 1.24, 4.95, 1.24, 0.31, 1.24, 0.62, 1.24] SNP counts: [10932, 32505, 12231, 6391, 1807, 8392, 3905, 23673, 18425, 3509, 2695, 11398, 3989, 16414, 18599, 7194, 12008, 17882, 2785, 1228, 7919, 5847, 9035, 6296, 14009] SNP IDs counts: [10932, 32505, 12231, 6391, 1807, 8392, 3905, 23673, 18425, 3509, 2695, 11398, 3989, 16414, 18599, 7194, 12008, 17882, 2785, 1228, 7919, 5847, 9035, 6296, 14009] Critical gap: 661411bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.34Mbp, 28.31Mbp, 34.86Mbp, 38.40Mbp, 39.33Mbp, 44.17Mbp, 46.41Mbp, 59.63Mbp, 70.73Mbp, 72.58Mbp, 74.08Mbp, 80.73Mbp, 82.98Mbp, 91.88Mbp, 101.91Mbp, 106.04Mbp, 112.90Mbp, 122.72Mbp, 124.66Mbp, 125.31Mbp, 129.59Mbp, 133.46Mbp, 138.38Mbp, 141.92Mbp, 149.74Mbp] 2025-01-31 09:51:10,846 DEBUG chr6 time: 266.26506474090274 s 2025-01-31 09:51:10,853 DEBUG Processing 292/672 atomic regions from SNP 87389 to 87989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,946 DEBUG Processing 147/730 atomic regions from SNP 43870 to 44470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,000 DEBUG Processing 695/710 atomic regions from SNP 208365 to 208965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,003 DEBUG chr6: Fitting background model for 25 segments 2025-01-31 09:51:11,030 DEBUG Processing 734/755 atomic regions from SNP 219909 to 220509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,073 DEBUG Processing 293/672 atomic regions from SNP 87689 to 88289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,075 DEBUG Processing 601/740 atomic regions from SNP 180055 to 180655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,167 DEBUG Processing 148/730 atomic regions from SNP 44170 to 44770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,246 DEBUG Processing 696/710 atomic regions from SNP 208665 to 209265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,285 DEBUG Processing 294/672 atomic regions from SNP 87989 to 88589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,295 DEBUG Processing 735/755 atomic regions from SNP 220209 to 220809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,336 DEBUG Processing 602/740 atomic regions from SNP 180355 to 180955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,394 DEBUG Processing 149/730 atomic regions from SNP 44470 to 45070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,496 DEBUG Processing 295/672 atomic regions from SNP 88289 to 88889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,507 DEBUG Processing 697/710 atomic regions from SNP 208965 to 209565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,583 DEBUG Processing 736/755 atomic regions from SNP 220509 to 221109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,594 DEBUG Processing 603/740 atomic regions from SNP 180655 to 181255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,617 DEBUG Processing 150/730 atomic regions from SNP 44770 to 45370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,706 DEBUG Processing 296/672 atomic regions from SNP 88589 to 89189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,761 DEBUG Processing 698/710 atomic regions from SNP 209265 to 209865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,841 DEBUG Processing 151/730 atomic regions from SNP 45070 to 45670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,860 DEBUG Processing 604/740 atomic regions from SNP 180955 to 181555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,874 DEBUG Processing 737/755 atomic regions from SNP 220809 to 221409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,913 DEBUG Processing 297/672 atomic regions from SNP 88889 to 89489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,007 DEBUG Processing 699/710 atomic regions from SNP 209565 to 210165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,067 DEBUG Processing 152/730 atomic regions from SNP 45370 to 45970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,121 DEBUG Processing 605/740 atomic regions from SNP 181255 to 181855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,128 DEBUG Processing 298/672 atomic regions from SNP 89189 to 89789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,155 DEBUG Processing 738/755 atomic regions from SNP 221109 to 221709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,272 DEBUG Processing 700/710 atomic regions from SNP 209865 to 210465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,299 DEBUG Processing 153/730 atomic regions from SNP 45670 to 46270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,356 DEBUG Processing 299/672 atomic regions from SNP 89489 to 90089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,389 DEBUG Processing 606/740 atomic regions from SNP 181555 to 182155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,428 DEBUG Processing 739/755 atomic regions from SNP 221409 to 222009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,529 DEBUG Processing 154/730 atomic regions from SNP 45970 to 46570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,548 DEBUG Processing 701/710 atomic regions from SNP 210165 to 210765 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,597 DEBUG Processing 300/672 atomic regions from SNP 89789 to 90389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,660 DEBUG Processing 607/740 atomic regions from SNP 181855 to 182455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,708 DEBUG Processing 740/755 atomic regions from SNP 221709 to 222309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,752 DEBUG Processing 155/730 atomic regions from SNP 46270 to 46870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,829 DEBUG Processing 702/710 atomic regions from SNP 210465 to 211065 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,830 DEBUG Processing 301/672 atomic regions from SNP 90089 to 90689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,917 DEBUG Processing 608/740 atomic regions from SNP 182155 to 182755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,976 DEBUG Processing 156/730 atomic regions from SNP 46570 to 47170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,977 DEBUG Processing 741/755 atomic regions from SNP 222009 to 222609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,068 DEBUG Processing 302/672 atomic regions from SNP 90389 to 90989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,103 DEBUG Processing 703/710 atomic regions from SNP 210765 to 211365 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,165 DEBUG Processing 609/740 atomic regions from SNP 182455 to 183055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,199 DEBUG Processing 157/730 atomic regions from SNP 46870 to 47470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,254 DEBUG Processing 742/755 atomic regions from SNP 222309 to 222909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,303 DEBUG Processing 303/672 atomic regions from SNP 90689 to 91289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,356 DEBUG Processing 704/710 atomic regions from SNP 211065 to 211665 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,419 DEBUG Processing 610/740 atomic regions from SNP 182755 to 183355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,429 DEBUG Processing 158/730 atomic regions from SNP 47170 to 47770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,532 DEBUG Processing 304/672 atomic regions from SNP 90989 to 91589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,539 DEBUG Processing 743/755 atomic regions from SNP 222609 to 223209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,606 DEBUG Processing 705/710 atomic regions from SNP 211365 to 211965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,655 DEBUG Processing 159/730 atomic regions from SNP 47470 to 48070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,672 DEBUG Processing 611/740 atomic regions from SNP 183055 to 183655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,752 DEBUG Processing 305/672 atomic regions from SNP 91289 to 91889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,829 DEBUG Processing 744/755 atomic regions from SNP 222909 to 223509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,871 DEBUG Processing 706/710 atomic regions from SNP 211665 to 212265 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,884 DEBUG Processing 160/730 atomic regions from SNP 47770 to 48370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,929 DEBUG Processing 612/740 atomic regions from SNP 183355 to 183955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,972 DEBUG Processing 306/672 atomic regions from SNP 91589 to 92189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,106 DEBUG Processing 161/730 atomic regions from SNP 48070 to 48670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,120 DEBUG Processing 745/755 atomic regions from SNP 223209 to 223809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,132 DEBUG Processing 707/710 atomic regions from SNP 211965 to 212565 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,179 DEBUG Processing 613/740 atomic regions from SNP 183655 to 184255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,199 DEBUG Processing 307/672 atomic regions from SNP 91889 to 92489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,322 DEBUG Processing 162/730 atomic regions from SNP 48370 to 48970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,383 DEBUG Processing 708/710 atomic regions from SNP 212265 to 212865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,414 DEBUG Processing 746/755 atomic regions from SNP 223509 to 224109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,428 DEBUG Processing 308/672 atomic regions from SNP 92189 to 92789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,429 DEBUG Processing 614/740 atomic regions from SNP 183955 to 184555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,530 DEBUG Processing 163/730 atomic regions from SNP 48670 to 49270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,638 DEBUG Processing 709/710 atomic regions from SNP 212565 to 213165 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,649 DEBUG Processing 309/672 atomic regions from SNP 92489 to 93089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,682 DEBUG Processing 615/740 atomic regions from SNP 184255 to 184855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,704 DEBUG Processing 747/755 atomic regions from SNP 223809 to 224409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,742 DEBUG Processing 164/730 atomic regions from SNP 48970 to 49570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,889 DEBUG Processing 310/672 atomic regions from SNP 92789 to 93389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,892 DEBUG Processing 710/710 atomic regions from SNP 212865 to 213465 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,929 DEBUG Processing 616/740 atomic regions from SNP 184555 to 185155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,962 DEBUG Processing 165/730 atomic regions from SNP 49270 to 49870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,974 DEBUG Processing 748/755 atomic regions from SNP 224109 to 224709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,043 DEBUG Unique SNPs positions in subchromosome 3: 213466 2025-01-31 09:51:15,123 DEBUG Processing 311/672 atomic regions from SNP 93089 to 93689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,174 DEBUG Processing 617/740 atomic regions from SNP 184855 to 185455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,193 DEBUG Processing 166/730 atomic regions from SNP 49570 to 50170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,220 DEBUG Processing 749/755 atomic regions from SNP 224409 to 225009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,357 DEBUG Processing 312/672 atomic regions from SNP 93389 to 93989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,408 DEBUG Processing 167/730 atomic regions from SNP 49870 to 50470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,415 DEBUG Processing 618/740 atomic regions from SNP 185155 to 185755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,462 DEBUG Processing 750/755 atomic regions from SNP 224709 to 225309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,589 DEBUG Processing 313/672 atomic regions from SNP 93689 to 94289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,616 DEBUG Processing 168/730 atomic regions from SNP 50170 to 50770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,655 DEBUG Processing 619/740 atomic regions from SNP 185455 to 186055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,704 DEBUG Processing 751/755 atomic regions from SNP 225009 to 225609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,820 DEBUG Processing 314/672 atomic regions from SNP 93989 to 94589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,826 DEBUG Processing 169/730 atomic regions from SNP 50470 to 51070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,903 DEBUG Processing 620/740 atomic regions from SNP 185755 to 186355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,954 DEBUG Processing 752/755 atomic regions from SNP 225309 to 225909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,037 DEBUG Processing 170/730 atomic regions from SNP 50770 to 51370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,040 DEBUG Processing 315/672 atomic regions from SNP 94289 to 94889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,168 DEBUG Processing 621/740 atomic regions from SNP 186055 to 186655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,201 DEBUG Processing 753/755 atomic regions from SNP 225609 to 226209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,246 DEBUG Processing 171/730 atomic regions from SNP 51070 to 51670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,247 DEBUG Processing 316/672 atomic regions from SNP 94589 to 95189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,425 DEBUG Processing 622/740 atomic regions from SNP 186355 to 186955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,452 DEBUG Processing 754/755 atomic regions from SNP 225909 to 226509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,460 DEBUG Processing 172/730 atomic regions from SNP 51370 to 51970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,469 DEBUG Processing 317/672 atomic regions from SNP 94889 to 95489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,675 DEBUG Processing 623/740 atomic regions from SNP 186655 to 187255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,675 DEBUG Processing 173/730 atomic regions from SNP 51670 to 52270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,700 DEBUG Processing 318/672 atomic regions from SNP 95189 to 95789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,704 DEBUG Processing 755/755 atomic regions from SNP 226209 to 226809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,862 DEBUG Unique SNPs positions in subchromosome 1: 226810 2025-01-31 09:51:16,891 DEBUG Processing 174/730 atomic regions from SNP 51970 to 52570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,925 DEBUG Processing 624/740 atomic regions from SNP 186955 to 187555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,927 DEBUG Processing 319/672 atomic regions from SNP 95489 to 96089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,102 DEBUG Processing 175/730 atomic regions from SNP 52270 to 52870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,137 DEBUG Processing 320/672 atomic regions from SNP 95789 to 96389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,170 DEBUG Processing 625/740 atomic regions from SNP 187255 to 187855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,314 DEBUG Processing 176/730 atomic regions from SNP 52570 to 53170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,350 DEBUG Processing 321/672 atomic regions from SNP 96089 to 96689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,414 DEBUG Processing 626/740 atomic regions from SNP 187555 to 188155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,524 DEBUG Processing 177/730 atomic regions from SNP 52870 to 53470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,564 DEBUG Processing 322/672 atomic regions from SNP 96389 to 96989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,670 DEBUG Processing 627/740 atomic regions from SNP 187855 to 188455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,738 DEBUG Processing 178/730 atomic regions from SNP 53170 to 53770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,781 DEBUG Processing 323/672 atomic regions from SNP 96689 to 97289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,944 DEBUG Processing 628/740 atomic regions from SNP 188155 to 188755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,960 DEBUG Processing 179/730 atomic regions from SNP 53470 to 54070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,000 DEBUG Processing 324/672 atomic regions from SNP 96989 to 97589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,179 DEBUG Processing 180/730 atomic regions from SNP 53770 to 54370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,205 DEBUG Processing 629/740 atomic regions from SNP 188455 to 189055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,233 DEBUG Processing 325/672 atomic regions from SNP 97289 to 97889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,396 DEBUG Processing 181/730 atomic regions from SNP 54070 to 54670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,472 DEBUG Processing 630/740 atomic regions from SNP 188755 to 189355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,475 DEBUG Processing 326/672 atomic regions from SNP 97589 to 98189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,610 DEBUG Processing 182/730 atomic regions from SNP 54370 to 54970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,710 DEBUG Processing 327/672 atomic regions from SNP 97889 to 98489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,724 DEBUG Processing 631/740 atomic regions from SNP 189055 to 189655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,824 DEBUG Processing 183/730 atomic regions from SNP 54670 to 55270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,937 DEBUG Processing 328/672 atomic regions from SNP 98189 to 98789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,988 DEBUG Processing 632/740 atomic regions from SNP 189355 to 189955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,038 DEBUG Processing 184/730 atomic regions from SNP 54970 to 55570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,157 DEBUG Processing 329/672 atomic regions from SNP 98489 to 99089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,251 DEBUG Processing 633/740 atomic regions from SNP 189655 to 190255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,253 DEBUG Processing 185/730 atomic regions from SNP 55270 to 55870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,376 DEBUG Processing 330/672 atomic regions from SNP 98789 to 99389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,470 DEBUG Processing 186/730 atomic regions from SNP 55570 to 56170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,519 DEBUG Processing 634/740 atomic regions from SNP 189955 to 190555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,585 DEBUG Processing 331/672 atomic regions from SNP 99089 to 99689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,685 DEBUG Processing 187/730 atomic regions from SNP 55870 to 56470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,781 DEBUG Processing 635/740 atomic regions from SNP 190255 to 190855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,790 DEBUG Processing 332/672 atomic regions from SNP 99389 to 99989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,900 DEBUG Processing 188/730 atomic regions from SNP 56170 to 56770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,998 DEBUG Processing 333/672 atomic regions from SNP 99689 to 100289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,031 DEBUG Processing 636/740 atomic regions from SNP 190555 to 191155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,125 DEBUG Processing 189/730 atomic regions from SNP 56470 to 57070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,212 DEBUG Processing 334/672 atomic regions from SNP 99989 to 100589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,268 DEBUG Processing 637/740 atomic regions from SNP 190855 to 191455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,345 DEBUG Processing 190/730 atomic regions from SNP 56770 to 57370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,431 DEBUG Processing 335/672 atomic regions from SNP 100289 to 100889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,511 DEBUG Processing 638/740 atomic regions from SNP 191155 to 191755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,550 DEBUG Processing 191/730 atomic regions from SNP 57070 to 57670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,652 DEBUG Processing 336/672 atomic regions from SNP 100589 to 101189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,747 DEBUG Processing 639/740 atomic regions from SNP 191455 to 192055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,754 DEBUG Processing 192/730 atomic regions from SNP 57370 to 57970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,885 DEBUG Processing 337/672 atomic regions from SNP 100889 to 101489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,969 DEBUG Processing 193/730 atomic regions from SNP 57670 to 58270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,987 DEBUG Processing 640/740 atomic regions from SNP 191755 to 192355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,114 DEBUG Processing 338/672 atomic regions from SNP 101189 to 101789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,192 DEBUG Processing 194/730 atomic regions from SNP 57970 to 58570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,226 DEBUG Processing 641/740 atomic regions from SNP 192055 to 192655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,323 DEBUG Processing 339/672 atomic regions from SNP 101489 to 102089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,416 DEBUG Processing 195/730 atomic regions from SNP 58270 to 58870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,470 DEBUG Processing 642/740 atomic regions from SNP 192355 to 192955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,525 DEBUG Processing 340/672 atomic regions from SNP 101789 to 102389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,647 DEBUG Processing 196/730 atomic regions from SNP 58570 to 59170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,715 DEBUG Processing 643/740 atomic regions from SNP 192655 to 193255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,730 DEBUG Processing 341/672 atomic regions from SNP 102089 to 102689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,870 DEBUG Processing 197/730 atomic regions from SNP 58870 to 59470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,935 DEBUG Processing 342/672 atomic regions from SNP 102389 to 102989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,959 DEBUG Processing 644/740 atomic regions from SNP 192955 to 193555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,090 DEBUG Processing 198/730 atomic regions from SNP 59170 to 59770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,141 DEBUG Processing 343/672 atomic regions from SNP 102689 to 103289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,197 DEBUG Processing 645/740 atomic regions from SNP 193255 to 193855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,310 DEBUG Processing 199/730 atomic regions from SNP 59470 to 60070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,355 DEBUG Processing 344/672 atomic regions from SNP 102989 to 103589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,438 DEBUG Processing 646/740 atomic regions from SNP 193555 to 194155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,529 DEBUG Processing 200/730 atomic regions from SNP 59770 to 60370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,571 DEBUG Processing 345/672 atomic regions from SNP 103289 to 103889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,685 DEBUG Processing 647/740 atomic regions from SNP 193855 to 194455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,753 DEBUG Processing 201/730 atomic regions from SNP 60070 to 60670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,796 DEBUG Processing 346/672 atomic regions from SNP 103589 to 104189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,924 DEBUG Processing 648/740 atomic regions from SNP 194155 to 194755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,975 DEBUG Processing 202/730 atomic regions from SNP 60370 to 60970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,011 DEBUG Processing 347/672 atomic regions from SNP 103889 to 104489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,159 DEBUG Processing 649/740 atomic regions from SNP 194455 to 195055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,201 DEBUG Processing 203/730 atomic regions from SNP 60670 to 61270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,229 DEBUG Processing 348/672 atomic regions from SNP 104189 to 104789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,396 DEBUG Processing 650/740 atomic regions from SNP 194755 to 195355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,430 DEBUG Processing 204/730 atomic regions from SNP 60970 to 61570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,449 DEBUG Processing 349/672 atomic regions from SNP 104489 to 105089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,635 DEBUG Processing 651/740 atomic regions from SNP 195055 to 195655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,649 DEBUG Processing 205/730 atomic regions from SNP 61270 to 61870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,675 DEBUG Processing 350/672 atomic regions from SNP 104789 to 105389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,870 DEBUG Processing 206/730 atomic regions from SNP 61570 to 62170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,879 DEBUG Processing 652/740 atomic regions from SNP 195355 to 195955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,912 DEBUG Processing 351/672 atomic regions from SNP 105089 to 105689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,953 DEBUG Subchromosome time: 222.52331295004115, subchromosome SNPs: 226810 2025-01-31 09:51:23,953 DEBUG Estimated BADs: [1.42, 0.47, 1.42, 0.71, 1.42, 2.84, 1.42, 0.35, 0.71, 1.42, 2.84, 0.35, 1.42, 0.71, 2.84, 9.93, 1.42, 0.35, 0.71, 1.42, 0.71, 4.25, 0.71] SNP counts: [20793, 3007, 27071, 10724, 3727, 6485, 5982, 5096, 12318, 4334, 7967, 2995, 11450, 5966, 7490, 3934, 34167, 6869, 15328, 19189, 5365, 4578, 1975] SNP IDs counts: [20793, 3007, 27071, 10724, 3727, 6485, 5982, 5096, 12318, 4334, 7967, 2995, 11450, 5966, 7490, 3934, 34167, 6869, 15328, 19189, 5365, 4578, 1975] Critical gap: 614922bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 14.87Mbp, 16.67Mbp, 31.88Mbp, 38.00Mbp, 40.08Mbp, 43.53Mbp, 46.83Mbp, 49.85Mbp, 57.02Mbp, 59.78Mbp, 64.00Mbp, 65.82Mbp, 72.10Mbp, 75.48Mbp, 79.61Mbp, 81.65Mbp, 100.75Mbp, 104.78Mbp, 113.39Mbp, 123.90Mbp, 126.89Mbp, 129.38Mbp, 130.69Mbp] 2025-01-31 09:51:23,953 DEBUG chr10 time: 222.52394726802595 s 2025-01-31 09:51:24,085 DEBUG chr10: Fitting background model for 23 segments 2025-01-31 09:51:24,096 DEBUG Processing 207/730 atomic regions from SNP 61870 to 62470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,124 DEBUG Processing 653/740 atomic regions from SNP 195655 to 196255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,143 DEBUG Processing 352/672 atomic regions from SNP 105389 to 105989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,321 DEBUG Processing 208/730 atomic regions from SNP 62170 to 62770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,361 DEBUG Processing 654/740 atomic regions from SNP 195955 to 196555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,380 DEBUG Processing 353/672 atomic regions from SNP 105689 to 106289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,543 DEBUG Processing 209/730 atomic regions from SNP 62470 to 63070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,603 DEBUG Processing 655/740 atomic regions from SNP 196255 to 196855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,608 DEBUG Processing 354/672 atomic regions from SNP 105989 to 106589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,758 DEBUG Processing 210/730 atomic regions from SNP 62770 to 63370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,831 DEBUG Processing 355/672 atomic regions from SNP 106289 to 106889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,845 DEBUG Processing 656/740 atomic regions from SNP 196555 to 197155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,975 DEBUG Processing 211/730 atomic regions from SNP 63070 to 63670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,069 DEBUG Processing 356/672 atomic regions from SNP 106589 to 107189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,089 DEBUG Processing 657/740 atomic regions from SNP 196855 to 197455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,189 DEBUG Processing 212/730 atomic regions from SNP 63370 to 63970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,299 DEBUG Processing 357/672 atomic regions from SNP 106889 to 107489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,332 DEBUG Processing 658/740 atomic regions from SNP 197155 to 197755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,408 DEBUG Processing 213/730 atomic regions from SNP 63670 to 64270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,508 DEBUG Processing 358/672 atomic regions from SNP 107189 to 107789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,575 DEBUG Processing 659/740 atomic regions from SNP 197455 to 198055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,624 DEBUG Processing 214/730 atomic regions from SNP 63970 to 64570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,719 DEBUG Processing 359/672 atomic regions from SNP 107489 to 108089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,817 DEBUG Processing 660/740 atomic regions from SNP 197755 to 198355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,839 DEBUG Processing 215/730 atomic regions from SNP 64270 to 64870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,925 DEBUG Processing 360/672 atomic regions from SNP 107789 to 108389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,053 DEBUG Processing 216/730 atomic regions from SNP 64570 to 65170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,060 DEBUG Processing 661/740 atomic regions from SNP 198055 to 198655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,125 DEBUG Processing 361/672 atomic regions from SNP 108089 to 108689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,269 DEBUG Processing 217/730 atomic regions from SNP 64870 to 65470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,302 DEBUG Processing 662/740 atomic regions from SNP 198355 to 198955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,324 DEBUG Processing 362/672 atomic regions from SNP 108389 to 108989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,488 DEBUG Processing 218/730 atomic regions from SNP 65170 to 65770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,527 DEBUG Processing 363/672 atomic regions from SNP 108689 to 109289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,550 DEBUG Processing 663/740 atomic regions from SNP 198655 to 199255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,702 DEBUG Processing 219/730 atomic regions from SNP 65470 to 66070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,734 DEBUG Processing 364/672 atomic regions from SNP 108989 to 109589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,812 DEBUG Processing 664/740 atomic regions from SNP 198955 to 199555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,915 DEBUG Processing 220/730 atomic regions from SNP 65770 to 66370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,941 DEBUG Processing 365/672 atomic regions from SNP 109289 to 109889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,990 DEBUG Subchromosome time: 216.2457484989427, subchromosome SNPs: 213466 2025-01-31 09:51:26,990 DEBUG Estimated BADs: [1.49, 4.48, 1.49, 0.37, 1.49, 0.50, 4.48, 0.50, 4.48, 0.00, 0.75, 4.48, 0.75, 2.99, 0.50, 1.49, 0.75, 4.48, 0.50, 1.49, 0.50, 1.49, 0.37, 1.49, 0.75, 1.49, 0.50, 1.49, 4.48, 1.49, 0.30, 1.49, 0.75, 0.30, 1.49, 2.99, 0.75, 1.49, 4.48, 1.49, 2.99] SNP counts: [1956, 1245, 3429, 2851, 2181, 2712, 2476, 2205, 2230, 46, 1580, 3023, 1213, 7939, 1972, 8395, 8483, 5553, 1664, 3940, 8108, 2381, 9907, 11086, 8163, 5351, 2101, 4274, 590, 8380, 6248, 3955, 4199, 4141, 5720, 8380, 8093, 31307, 5949, 23129, 8242] SNP IDs counts: [1956, 1245, 3429, 2851, 2181, 2712, 2476, 2205, 2230, 46, 1580, 3023, 1213, 7939, 1972, 8395, 8483, 5553, 1664, 3940, 8108, 2381, 9907, 11086, 8163, 5351, 2101, 4274, 590, 8380, 6248, 3955, 4199, 4141, 5720, 8380, 8093, 31307, 5949, 23129, 8242] Critical gap: 665187bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.44Mbp, 5.12Mbp, 7.30Mbp, 12.09Mbp, 13.46Mbp, 15.90Mbp, 17.22Mbp, 18.89Mbp, 20.10Mbp[0.68Mbp], 21.44Mbp[1.34Mbp], 24.30Mbp, 25.95Mbp, 26.76Mbp, 31.14Mbp, 33.78Mbp, 38.27Mbp, 44.25Mbp, 47.15Mbp, 48.23Mbp, 50.44Mbp, 55.26Mbp, 56.65Mbp, 62.98Mbp, 69.03Mbp, 73.56Mbp, 76.55Mbp, 77.74Mbp, 80.02Mbp, 80.32Mbp, 84.88Mbp, 88.54Mbp, 90.77Mbp, 93.10Mbp, 95.57Mbp, 98.66Mbp, 103.11Mbp, 108.46Mbp, 125.37Mbp, 128.51Mbp, 140.93Mbp, 145.44Mbp] 2025-01-31 09:51:26,991 DEBUG chr7 time: 216.24631484400015 s 2025-01-31 09:51:27,090 DEBUG Processing 665/740 atomic regions from SNP 199255 to 199855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,127 DEBUG Processing 221/730 atomic regions from SNP 66070 to 66670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,138 DEBUG chr7: Fitting background model for 40 segments 2025-01-31 09:51:27,149 DEBUG Processing 366/672 atomic regions from SNP 109589 to 110189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,343 DEBUG Processing 222/730 atomic regions from SNP 66370 to 66970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,356 DEBUG Processing 367/672 atomic regions from SNP 109889 to 110489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,372 DEBUG Processing 666/740 atomic regions from SNP 199555 to 200155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,565 DEBUG Processing 223/730 atomic regions from SNP 66670 to 67270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,567 DEBUG Processing 368/672 atomic regions from SNP 110189 to 110789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,658 DEBUG Processing 667/740 atomic regions from SNP 199855 to 200455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,777 DEBUG Processing 369/672 atomic regions from SNP 110489 to 111089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,784 DEBUG Processing 224/730 atomic regions from SNP 66970 to 67570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,932 DEBUG Processing 668/740 atomic regions from SNP 200155 to 200755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,991 DEBUG Processing 370/672 atomic regions from SNP 110789 to 111389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,006 DEBUG Processing 225/730 atomic regions from SNP 67270 to 67870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,193 DEBUG Processing 669/740 atomic regions from SNP 200455 to 201055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,203 DEBUG Processing 371/672 atomic regions from SNP 111089 to 111689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,222 DEBUG Processing 226/730 atomic regions from SNP 67570 to 68170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,413 DEBUG Processing 372/672 atomic regions from SNP 111389 to 111989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,438 DEBUG Processing 670/740 atomic regions from SNP 200755 to 201355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,439 DEBUG Processing 227/730 atomic regions from SNP 67870 to 68470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,638 DEBUG Processing 373/672 atomic regions from SNP 111689 to 112289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,655 DEBUG Processing 228/730 atomic regions from SNP 68170 to 68770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,683 DEBUG Processing 671/740 atomic regions from SNP 201055 to 201655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,855 DEBUG Processing 374/672 atomic regions from SNP 111989 to 112589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,867 DEBUG Processing 229/730 atomic regions from SNP 68470 to 69070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,928 DEBUG Processing 672/740 atomic regions from SNP 201355 to 201955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,068 DEBUG Processing 375/672 atomic regions from SNP 112289 to 112889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,080 DEBUG Processing 230/730 atomic regions from SNP 68770 to 69370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,172 DEBUG Processing 673/740 atomic regions from SNP 201655 to 202255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,285 DEBUG Processing 376/672 atomic regions from SNP 112589 to 113189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,303 DEBUG Processing 231/730 atomic regions from SNP 69070 to 69670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,418 DEBUG Processing 674/740 atomic regions from SNP 201955 to 202555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,500 DEBUG Processing 377/672 atomic regions from SNP 112889 to 113489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,524 DEBUG Processing 232/730 atomic regions from SNP 69370 to 69970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,672 DEBUG Processing 675/740 atomic regions from SNP 202255 to 202855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,715 DEBUG Processing 378/672 atomic regions from SNP 113189 to 113789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,748 DEBUG Processing 233/730 atomic regions from SNP 69670 to 70270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,926 DEBUG Processing 676/740 atomic regions from SNP 202555 to 203155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,930 DEBUG Processing 379/672 atomic regions from SNP 113489 to 114089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,971 DEBUG Processing 234/730 atomic regions from SNP 69970 to 70570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,143 DEBUG Processing 380/672 atomic regions from SNP 113789 to 114389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,177 DEBUG Processing 677/740 atomic regions from SNP 202855 to 203455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,196 DEBUG Processing 235/730 atomic regions from SNP 70270 to 70870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,369 DEBUG Processing 381/672 atomic regions from SNP 114089 to 114689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,423 DEBUG Processing 236/730 atomic regions from SNP 70570 to 71170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,438 DEBUG Processing 678/740 atomic regions from SNP 203155 to 203755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,587 DEBUG Processing 382/672 atomic regions from SNP 114389 to 114989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,647 DEBUG Processing 237/730 atomic regions from SNP 70870 to 71470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,699 DEBUG Processing 679/740 atomic regions from SNP 203455 to 204055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,810 DEBUG Processing 383/672 atomic regions from SNP 114689 to 115289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,895 DEBUG Processing 238/730 atomic regions from SNP 71170 to 71770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,974 DEBUG Processing 680/740 atomic regions from SNP 203755 to 204355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,034 DEBUG Processing 384/672 atomic regions from SNP 114989 to 115589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,141 DEBUG Processing 239/730 atomic regions from SNP 71470 to 72070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,251 DEBUG Processing 385/672 atomic regions from SNP 115289 to 115889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,259 DEBUG Processing 681/740 atomic regions from SNP 204055 to 204655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,359 DEBUG Processing 240/730 atomic regions from SNP 71770 to 72370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,462 DEBUG Processing 386/672 atomic regions from SNP 115589 to 116189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,538 DEBUG Processing 682/740 atomic regions from SNP 204355 to 204955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,583 DEBUG Processing 241/730 atomic regions from SNP 72070 to 72670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,682 DEBUG Processing 387/672 atomic regions from SNP 115889 to 116489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,811 DEBUG Processing 242/730 atomic regions from SNP 72370 to 72970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,818 DEBUG Processing 683/740 atomic regions from SNP 204655 to 205255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,921 DEBUG Processing 388/672 atomic regions from SNP 116189 to 116789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,043 DEBUG Processing 243/730 atomic regions from SNP 72670 to 73270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,101 DEBUG Processing 684/740 atomic regions from SNP 204955 to 205555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,143 DEBUG Processing 389/672 atomic regions from SNP 116489 to 117089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,296 DEBUG Processing 244/730 atomic regions from SNP 72970 to 73570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,390 DEBUG Processing 390/672 atomic regions from SNP 116789 to 117389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,404 DEBUG Processing 685/740 atomic regions from SNP 205255 to 205855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,569 DEBUG Processing 245/730 atomic regions from SNP 73270 to 73870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,636 DEBUG Processing 391/672 atomic regions from SNP 117089 to 117689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,721 DEBUG Processing 686/740 atomic regions from SNP 205555 to 206155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,845 DEBUG Processing 246/730 atomic regions from SNP 73570 to 74170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,884 DEBUG Processing 392/672 atomic regions from SNP 117389 to 117989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,042 DEBUG Processing 687/740 atomic regions from SNP 205855 to 206455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,106 DEBUG Processing 247/730 atomic regions from SNP 73870 to 74470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,134 DEBUG Processing 393/672 atomic regions from SNP 117689 to 118289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,358 DEBUG Processing 688/740 atomic regions from SNP 206155 to 206755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,367 DEBUG Processing 248/730 atomic regions from SNP 74170 to 74770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,372 DEBUG Processing 394/672 atomic regions from SNP 117989 to 118589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,608 DEBUG Processing 395/672 atomic regions from SNP 118289 to 118889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,621 DEBUG Processing 249/730 atomic regions from SNP 74470 to 75070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,663 DEBUG Processing 689/740 atomic regions from SNP 206455 to 207055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,839 DEBUG Processing 396/672 atomic regions from SNP 118589 to 119189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,857 DEBUG Processing 250/730 atomic regions from SNP 74770 to 75370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,950 DEBUG Processing 690/740 atomic regions from SNP 206755 to 207355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,059 DEBUG Processing 397/672 atomic regions from SNP 118889 to 119489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,084 DEBUG Processing 251/730 atomic regions from SNP 75070 to 75670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,219 DEBUG Processing 691/740 atomic regions from SNP 207055 to 207655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,279 DEBUG Processing 398/672 atomic regions from SNP 119189 to 119789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,313 DEBUG Processing 252/730 atomic regions from SNP 75370 to 75970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,483 DEBUG Processing 692/740 atomic regions from SNP 207355 to 207955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,491 DEBUG Processing 399/672 atomic regions from SNP 119489 to 120089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,537 DEBUG Processing 253/730 atomic regions from SNP 75670 to 76270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,705 DEBUG Processing 400/672 atomic regions from SNP 119789 to 120389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,753 DEBUG Processing 693/740 atomic regions from SNP 207655 to 208255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,772 DEBUG Processing 254/730 atomic regions from SNP 75970 to 76570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,913 DEBUG Processing 401/672 atomic regions from SNP 120089 to 120689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,011 DEBUG Processing 255/730 atomic regions from SNP 76270 to 76870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,036 DEBUG Processing 694/740 atomic regions from SNP 207955 to 208555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,111 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:51:35,113 DEBUG Processing 402/672 atomic regions from SNP 120389 to 120989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,245 DEBUG Processing 256/730 atomic regions from SNP 76570 to 77170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,318 DEBUG Processing 403/672 atomic regions from SNP 120689 to 121289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,321 DEBUG Processing 695/740 atomic regions from SNP 208255 to 208855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,479 DEBUG Processing 257/730 atomic regions from SNP 76870 to 77470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,528 DEBUG Processing 404/672 atomic regions from SNP 120989 to 121589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,613 DEBUG Processing 696/740 atomic regions from SNP 208555 to 209155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,708 DEBUG Processing 258/730 atomic regions from SNP 77170 to 77770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,742 DEBUG Processing 405/672 atomic regions from SNP 121289 to 121889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,910 DEBUG Processing 697/740 atomic regions from SNP 208855 to 209455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,927 DEBUG Processing 259/730 atomic regions from SNP 77470 to 78070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,961 DEBUG Processing 406/672 atomic regions from SNP 121589 to 122189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,147 DEBUG Processing 260/730 atomic regions from SNP 77770 to 78370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,183 DEBUG Processing 407/672 atomic regions from SNP 121889 to 122489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,208 DEBUG Processing 698/740 atomic regions from SNP 209155 to 209755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,374 DEBUG Processing 261/730 atomic regions from SNP 78070 to 78670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,416 DEBUG Processing 408/672 atomic regions from SNP 122189 to 122789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,511 DEBUG Processing 699/740 atomic regions from SNP 209455 to 210055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,600 DEBUG Processing 262/730 atomic regions from SNP 78370 to 78970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,664 DEBUG Processing 409/672 atomic regions from SNP 122489 to 123089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,844 DEBUG Processing 700/740 atomic regions from SNP 209755 to 210355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,876 DEBUG Processing 263/730 atomic regions from SNP 78670 to 79270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,911 DEBUG Processing 410/672 atomic regions from SNP 122789 to 123389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,104 DEBUG Processing 264/730 atomic regions from SNP 78970 to 79570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,144 DEBUG Processing 701/740 atomic regions from SNP 210055 to 210655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,155 DEBUG Processing 411/672 atomic regions from SNP 123089 to 123689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,328 DEBUG Processing 265/730 atomic regions from SNP 79270 to 79870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,373 DEBUG Processing 412/672 atomic regions from SNP 123389 to 123989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,449 DEBUG Processing 702/740 atomic regions from SNP 210355 to 210955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,569 DEBUG Processing 266/730 atomic regions from SNP 79570 to 80170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,602 DEBUG Processing 413/672 atomic regions from SNP 123689 to 124289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,750 DEBUG Processing 703/740 atomic regions from SNP 210655 to 211255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,806 DEBUG Processing 267/730 atomic regions from SNP 79870 to 80470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,827 DEBUG Processing 414/672 atomic regions from SNP 123989 to 124589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,046 DEBUG Processing 268/730 atomic regions from SNP 80170 to 80770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,054 DEBUG Processing 704/740 atomic regions from SNP 210955 to 211555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,060 DEBUG Processing 415/672 atomic regions from SNP 124289 to 124889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,291 DEBUG Processing 269/730 atomic regions from SNP 80470 to 81070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,300 DEBUG Processing 416/672 atomic regions from SNP 124589 to 125189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,360 DEBUG Processing 705/740 atomic regions from SNP 211255 to 211855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,526 DEBUG Processing 270/730 atomic regions from SNP 80770 to 81370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,532 DEBUG Processing 417/672 atomic regions from SNP 124889 to 125489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,668 DEBUG Processing 706/740 atomic regions from SNP 211555 to 212155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,762 DEBUG Processing 271/730 atomic regions from SNP 81070 to 81670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,763 DEBUG Processing 418/672 atomic regions from SNP 125189 to 125789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,972 DEBUG Processing 707/740 atomic regions from SNP 211855 to 212455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,995 DEBUG Processing 419/672 atomic regions from SNP 125489 to 126089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,998 DEBUG Processing 272/730 atomic regions from SNP 81370 to 81970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,226 DEBUG Processing 420/672 atomic regions from SNP 125789 to 126389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,233 DEBUG Processing 273/730 atomic regions from SNP 81670 to 82270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,271 DEBUG Processing 708/740 atomic regions from SNP 212155 to 212755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,460 DEBUG Processing 421/672 atomic regions from SNP 126089 to 126689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,471 DEBUG Processing 274/730 atomic regions from SNP 81970 to 82570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,573 DEBUG Processing 709/740 atomic regions from SNP 212455 to 213055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,691 DEBUG Processing 422/672 atomic regions from SNP 126389 to 126989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,703 DEBUG Processing 275/730 atomic regions from SNP 82270 to 82870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,872 DEBUG Processing 710/740 atomic regions from SNP 212755 to 213355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,928 DEBUG Processing 423/672 atomic regions from SNP 126689 to 127289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,950 DEBUG Processing 276/730 atomic regions from SNP 82570 to 83170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,169 DEBUG Processing 424/672 atomic regions from SNP 126989 to 127589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,184 DEBUG Processing 711/740 atomic regions from SNP 213055 to 213655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,192 DEBUG Processing 277/730 atomic regions from SNP 82870 to 83470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,420 DEBUG Processing 425/672 atomic regions from SNP 127289 to 127889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,495 DEBUG Processing 278/730 atomic regions from SNP 83170 to 83770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,538 DEBUG Processing 712/740 atomic regions from SNP 213355 to 213955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,629 DEBUG Processing 426/672 atomic regions from SNP 127589 to 128189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,724 DEBUG Processing 279/730 atomic regions from SNP 83470 to 84070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,831 DEBUG Processing 713/740 atomic regions from SNP 213655 to 214255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,845 DEBUG Processing 427/672 atomic regions from SNP 127889 to 128489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,947 DEBUG Processing 280/730 atomic regions from SNP 83770 to 84370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,062 DEBUG Processing 428/672 atomic regions from SNP 128189 to 128789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,116 DEBUG Processing 714/740 atomic regions from SNP 213955 to 214555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,171 DEBUG Processing 281/730 atomic regions from SNP 84070 to 84670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,286 DEBUG Processing 429/672 atomic regions from SNP 128489 to 129089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,399 DEBUG Processing 282/730 atomic regions from SNP 84370 to 84970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,419 DEBUG Processing 715/740 atomic regions from SNP 214255 to 214855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,510 DEBUG Processing 430/672 atomic regions from SNP 128789 to 129389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,627 DEBUG Processing 283/730 atomic regions from SNP 84670 to 85270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,719 DEBUG Processing 716/740 atomic regions from SNP 214555 to 215155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,741 DEBUG Processing 431/672 atomic regions from SNP 129089 to 129689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,865 DEBUG Processing 284/730 atomic regions from SNP 84970 to 85570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,956 DEBUG Processing 432/672 atomic regions from SNP 129389 to 129989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,005 DEBUG Processing 717/740 atomic regions from SNP 214855 to 215455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,098 DEBUG Processing 285/730 atomic regions from SNP 85270 to 85870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,171 DEBUG Processing 433/672 atomic regions from SNP 129689 to 130289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,296 DEBUG Processing 718/740 atomic regions from SNP 215155 to 215755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,353 DEBUG Processing 286/730 atomic regions from SNP 85570 to 86170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,394 DEBUG Processing 434/672 atomic regions from SNP 129989 to 130589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,583 DEBUG Processing 719/740 atomic regions from SNP 215455 to 216055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,589 DEBUG Processing 287/730 atomic regions from SNP 85870 to 86470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,619 DEBUG Processing 435/672 atomic regions from SNP 130289 to 130889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,826 DEBUG Processing 288/730 atomic regions from SNP 86170 to 86770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,847 DEBUG Processing 436/672 atomic regions from SNP 130589 to 131189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,866 DEBUG Processing 720/740 atomic regions from SNP 215755 to 216355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,066 DEBUG Processing 289/730 atomic regions from SNP 86470 to 87070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,089 DEBUG Processing 437/672 atomic regions from SNP 130889 to 131489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,159 DEBUG Processing 721/740 atomic regions from SNP 216055 to 216655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,302 DEBUG Processing 290/730 atomic regions from SNP 86770 to 87370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,323 DEBUG Processing 438/672 atomic regions from SNP 131189 to 131789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,439 DEBUG Processing 722/740 atomic regions from SNP 216355 to 216955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,529 DEBUG Processing 291/730 atomic regions from SNP 87070 to 87670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,543 DEBUG Processing 439/672 atomic regions from SNP 131489 to 132089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,725 DEBUG Processing 723/740 atomic regions from SNP 216655 to 217255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,757 DEBUG Processing 292/730 atomic regions from SNP 87370 to 87970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,769 DEBUG Processing 440/672 atomic regions from SNP 131789 to 132389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,980 DEBUG Processing 293/730 atomic regions from SNP 87670 to 88270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,988 DEBUG Processing 441/672 atomic regions from SNP 132089 to 132689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,000 DEBUG Processing 724/740 atomic regions from SNP 216955 to 217555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,200 DEBUG Processing 294/730 atomic regions from SNP 87970 to 88570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,203 DEBUG Processing 442/672 atomic regions from SNP 132389 to 132989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,273 DEBUG Processing 725/740 atomic regions from SNP 217255 to 217855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,424 DEBUG Processing 295/730 atomic regions from SNP 88270 to 88870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,424 DEBUG Processing 443/672 atomic regions from SNP 132689 to 133289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,554 DEBUG Processing 726/740 atomic regions from SNP 217555 to 218155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,648 DEBUG Processing 444/672 atomic regions from SNP 132989 to 133589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,653 DEBUG Processing 296/730 atomic regions from SNP 88570 to 89170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,828 DEBUG Processing 727/740 atomic regions from SNP 217855 to 218455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,876 DEBUG Processing 445/672 atomic regions from SNP 133289 to 133889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,885 DEBUG Processing 297/730 atomic regions from SNP 88870 to 89470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,113 DEBUG Processing 446/672 atomic regions from SNP 133589 to 134189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,114 DEBUG Processing 728/740 atomic regions from SNP 218155 to 218755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,125 DEBUG Processing 298/730 atomic regions from SNP 89170 to 89770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,343 DEBUG Processing 447/672 atomic regions from SNP 133889 to 134489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,361 DEBUG Processing 299/730 atomic regions from SNP 89470 to 90070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,373 DEBUG Processing 729/740 atomic regions from SNP 218455 to 219055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,573 DEBUG Processing 448/672 atomic regions from SNP 134189 to 134789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,597 DEBUG Processing 300/730 atomic regions from SNP 89770 to 90370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,631 DEBUG Processing 730/740 atomic regions from SNP 218755 to 219355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,794 DEBUG Processing 449/672 atomic regions from SNP 134489 to 135089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,824 DEBUG Processing 301/730 atomic regions from SNP 90070 to 90670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,888 DEBUG Processing 731/740 atomic regions from SNP 219055 to 219655 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,018 DEBUG Processing 450/672 atomic regions from SNP 134789 to 135389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,051 DEBUG Processing 302/730 atomic regions from SNP 90370 to 90970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,154 DEBUG Processing 732/740 atomic regions from SNP 219355 to 219955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,240 DEBUG Processing 451/672 atomic regions from SNP 135089 to 135689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,273 DEBUG Processing 303/730 atomic regions from SNP 90670 to 91270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,408 DEBUG Processing 733/740 atomic regions from SNP 219655 to 220255 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,468 DEBUG Processing 452/672 atomic regions from SNP 135389 to 135989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,503 DEBUG Processing 304/730 atomic regions from SNP 90970 to 91570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,665 DEBUG Processing 734/740 atomic regions from SNP 219955 to 220555 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,691 DEBUG Processing 453/672 atomic regions from SNP 135689 to 136289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,727 DEBUG Processing 305/730 atomic regions from SNP 91270 to 91870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,915 DEBUG Processing 735/740 atomic regions from SNP 220255 to 220855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,916 DEBUG Processing 454/672 atomic regions from SNP 135989 to 136589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,953 DEBUG Processing 306/730 atomic regions from SNP 91570 to 92170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,137 DEBUG Processing 455/672 atomic regions from SNP 136289 to 136889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,160 DEBUG Processing 736/740 atomic regions from SNP 220555 to 221155 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,181 DEBUG Processing 307/730 atomic regions from SNP 91870 to 92470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,356 DEBUG Processing 456/672 atomic regions from SNP 136589 to 137189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,413 DEBUG Processing 737/740 atomic regions from SNP 220855 to 221455 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,414 DEBUG Processing 308/730 atomic regions from SNP 92170 to 92770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,583 DEBUG Processing 457/672 atomic regions from SNP 136889 to 137489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,669 DEBUG Processing 309/730 atomic regions from SNP 92470 to 93070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,669 DEBUG Processing 738/740 atomic regions from SNP 221155 to 221755 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,803 DEBUG Processing 458/672 atomic regions from SNP 137189 to 137789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,911 DEBUG Processing 310/730 atomic regions from SNP 92770 to 93370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,932 DEBUG Processing 739/740 atomic regions from SNP 221455 to 222055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,035 DEBUG Processing 459/672 atomic regions from SNP 137489 to 138089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,143 DEBUG Processing 311/730 atomic regions from SNP 93070 to 93670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,187 DEBUG Processing 740/740 atomic regions from SNP 221755 to 222355 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,262 DEBUG Processing 460/672 atomic regions from SNP 137789 to 138389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,341 DEBUG Unique SNPs positions in subchromosome 1: 222356 2025-01-31 09:51:48,379 DEBUG Processing 312/730 atomic regions from SNP 93370 to 93970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,480 DEBUG Processing 461/672 atomic regions from SNP 138089 to 138689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,610 DEBUG Processing 313/730 atomic regions from SNP 93670 to 94270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,707 DEBUG Processing 462/672 atomic regions from SNP 138389 to 138989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,843 DEBUG Processing 314/730 atomic regions from SNP 93970 to 94570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,938 DEBUG Processing 463/672 atomic regions from SNP 138689 to 139289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,102 DEBUG Processing 315/730 atomic regions from SNP 94270 to 94870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,281 DEBUG Processing 464/672 atomic regions from SNP 138989 to 139589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,353 DEBUG Processing 316/730 atomic regions from SNP 94570 to 95170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,562 DEBUG Processing 465/672 atomic regions from SNP 139289 to 139889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,630 DEBUG Processing 317/730 atomic regions from SNP 94870 to 95470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,867 DEBUG Processing 466/672 atomic regions from SNP 139589 to 140189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,964 DEBUG Processing 318/730 atomic regions from SNP 95170 to 95770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,094 DEBUG Processing 467/672 atomic regions from SNP 139889 to 140489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,203 DEBUG Processing 319/730 atomic regions from SNP 95470 to 96070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,318 DEBUG Processing 468/672 atomic regions from SNP 140189 to 140789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,426 DEBUG Processing 320/730 atomic regions from SNP 95770 to 96370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,548 DEBUG Processing 469/672 atomic regions from SNP 140489 to 141089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,662 DEBUG Processing 321/730 atomic regions from SNP 96070 to 96670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,774 DEBUG Processing 470/672 atomic regions from SNP 140789 to 141389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,906 DEBUG Processing 322/730 atomic regions from SNP 96370 to 96970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,998 DEBUG Processing 471/672 atomic regions from SNP 141089 to 141689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,164 DEBUG Processing 323/730 atomic regions from SNP 96670 to 97270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,230 DEBUG Processing 472/672 atomic regions from SNP 141389 to 141989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,433 DEBUG Processing 324/730 atomic regions from SNP 96970 to 97570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,460 DEBUG Processing 473/672 atomic regions from SNP 141689 to 142289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,769 DEBUG Processing 325/730 atomic regions from SNP 97270 to 97870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,770 DEBUG Processing 474/672 atomic regions from SNP 141989 to 142589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,159 DEBUG Processing 326/730 atomic regions from SNP 97570 to 98170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,175 DEBUG Processing 475/672 atomic regions from SNP 142289 to 142889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,562 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:51:52,564 DEBUG chr11: Signal quantile: 0.990. signal threshold: 14. Best RMSEA: 0.014 2025-01-31 09:51:52,577 DEBUG Processing 476/672 atomic regions from SNP 142589 to 143189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,600 DEBUG Processing 327/730 atomic regions from SNP 97870 to 98470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,840 DEBUG Processing 477/672 atomic regions from SNP 142889 to 143489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,910 DEBUG Processing 328/730 atomic regions from SNP 98170 to 98770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,071 DEBUG Processing 478/672 atomic regions from SNP 143189 to 143789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,164 DEBUG Processing 329/730 atomic regions from SNP 98470 to 99070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,299 DEBUG Processing 479/672 atomic regions from SNP 143489 to 144089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,418 DEBUG Processing 330/730 atomic regions from SNP 98770 to 99370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,518 DEBUG Processing 480/672 atomic regions from SNP 143789 to 144389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,668 DEBUG Processing 331/730 atomic regions from SNP 99070 to 99670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,746 DEBUG Processing 481/672 atomic regions from SNP 144089 to 144689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,945 DEBUG Processing 332/730 atomic regions from SNP 99370 to 99970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,016 DEBUG Processing 482/672 atomic regions from SNP 144389 to 144989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,196 DEBUG Processing 333/730 atomic regions from SNP 99670 to 100270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,249 DEBUG Processing 483/672 atomic regions from SNP 144689 to 145289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,466 DEBUG Processing 334/730 atomic regions from SNP 99970 to 100570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,483 DEBUG Processing 484/672 atomic regions from SNP 144989 to 145589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,714 DEBUG Processing 485/672 atomic regions from SNP 145289 to 145889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,725 DEBUG Processing 335/730 atomic regions from SNP 100270 to 100870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,942 DEBUG Processing 486/672 atomic regions from SNP 145589 to 146189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,961 DEBUG Processing 336/730 atomic regions from SNP 100570 to 101170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,171 DEBUG Processing 487/672 atomic regions from SNP 145889 to 146489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,192 DEBUG Processing 337/730 atomic regions from SNP 100870 to 101470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,301 DEBUG chr11 total SNP count: 217712 2025-01-31 09:51:55,301 DEBUG chr11 length: 122082543 2025-01-31 09:51:55,301 DEBUG ----------------------------------------- 2025-01-31 09:51:55,302 INFO Processing SNPs in chr11 2025-01-31 09:51:55,408 DEBUG Processing 488/672 atomic regions from SNP 146189 to 146789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,441 DEBUG Processing 338/730 atomic regions from SNP 101170 to 101770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,528 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 217712)] 2025-01-31 09:51:55,645 DEBUG Processing 489/672 atomic regions from SNP 146489 to 147089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,685 DEBUG Processing 339/730 atomic regions from SNP 101470 to 102070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,686 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:55,878 DEBUG Processing 490/672 atomic regions from SNP 146789 to 147389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,932 DEBUG Processing 340/730 atomic regions from SNP 101770 to 102370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,099 DEBUG Processing 491/672 atomic regions from SNP 147089 to 147689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,182 DEBUG Processing 341/730 atomic regions from SNP 102070 to 102670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,330 DEBUG Processing 492/672 atomic regions from SNP 147389 to 147989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,404 DEBUG Processing 342/730 atomic regions from SNP 102370 to 102970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,557 DEBUG Processing 493/672 atomic regions from SNP 147689 to 148289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,632 DEBUG Processing 343/730 atomic regions from SNP 102670 to 103270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,778 DEBUG Processing 494/672 atomic regions from SNP 147989 to 148589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,850 DEBUG Processing 344/730 atomic regions from SNP 102970 to 103570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,001 DEBUG Processing 495/672 atomic regions from SNP 148289 to 148889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,069 DEBUG Processing 345/730 atomic regions from SNP 103270 to 103870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,226 DEBUG Processing 496/672 atomic regions from SNP 148589 to 149189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,291 DEBUG Processing 346/730 atomic regions from SNP 103570 to 104170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,456 DEBUG Processing 497/672 atomic regions from SNP 148889 to 149489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,515 DEBUG Processing 347/730 atomic regions from SNP 103870 to 104470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,683 DEBUG Processing 498/672 atomic regions from SNP 149189 to 149789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,741 DEBUG Processing 348/730 atomic regions from SNP 104170 to 104770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,914 DEBUG Processing 499/672 atomic regions from SNP 149489 to 150089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,967 DEBUG Processing 349/730 atomic regions from SNP 104470 to 105070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,139 DEBUG Processing 500/672 atomic regions from SNP 149789 to 150389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,194 DEBUG Processing 350/730 atomic regions from SNP 104770 to 105370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,370 DEBUG Processing 501/672 atomic regions from SNP 150089 to 150689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,455 DEBUG Processing 351/730 atomic regions from SNP 105070 to 105670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,590 DEBUG Processing 502/672 atomic regions from SNP 150389 to 150989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,704 DEBUG Processing 352/730 atomic regions from SNP 105370 to 105970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,808 DEBUG Processing 503/672 atomic regions from SNP 150689 to 151289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,938 DEBUG Processing 353/730 atomic regions from SNP 105670 to 106270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,024 DEBUG Processing 504/672 atomic regions from SNP 150989 to 151589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,170 DEBUG Processing 354/730 atomic regions from SNP 105970 to 106570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,239 DEBUG Processing 505/672 atomic regions from SNP 151289 to 151889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,412 DEBUG Processing 355/730 atomic regions from SNP 106270 to 106870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,456 DEBUG Processing 506/672 atomic regions from SNP 151589 to 152189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,650 DEBUG Processing 356/730 atomic regions from SNP 106570 to 107170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,676 DEBUG Processing 507/672 atomic regions from SNP 151889 to 152489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,902 DEBUG Processing 357/730 atomic regions from SNP 106870 to 107470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,904 DEBUG Processing 508/672 atomic regions from SNP 152189 to 152789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,124 DEBUG Processing 509/672 atomic regions from SNP 152489 to 153089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,150 DEBUG Processing 358/730 atomic regions from SNP 107170 to 107770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,340 DEBUG Processing 510/672 atomic regions from SNP 152789 to 153389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,387 DEBUG Processing 359/730 atomic regions from SNP 107470 to 108070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,433 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:52:00,561 DEBUG Processing 511/672 atomic regions from SNP 153089 to 153689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,632 DEBUG Processing 360/730 atomic regions from SNP 107770 to 108370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,789 DEBUG Processing 512/672 atomic regions from SNP 153389 to 153989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,889 DEBUG Processing 361/730 atomic regions from SNP 108070 to 108670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,014 DEBUG Processing 513/672 atomic regions from SNP 153689 to 154289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,117 DEBUG Processing 362/730 atomic regions from SNP 108370 to 108970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,236 DEBUG Processing 514/672 atomic regions from SNP 153989 to 154589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,355 DEBUG Processing 363/730 atomic regions from SNP 108670 to 109270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,461 DEBUG Processing 515/672 atomic regions from SNP 154289 to 154889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,576 DEBUG Processing 364/730 atomic regions from SNP 108970 to 109570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,688 DEBUG Processing 516/672 atomic regions from SNP 154589 to 155189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,802 DEBUG Processing 365/730 atomic regions from SNP 109270 to 109870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,919 DEBUG Processing 517/672 atomic regions from SNP 154889 to 155489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,042 DEBUG Processing 366/730 atomic regions from SNP 109570 to 110170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,138 DEBUG Processing 518/672 atomic regions from SNP 155189 to 155789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,281 DEBUG Processing 367/730 atomic regions from SNP 109870 to 110470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,358 DEBUG Processing 519/672 atomic regions from SNP 155489 to 156089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,532 DEBUG Processing 368/730 atomic regions from SNP 110170 to 110770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,574 DEBUG Processing 520/672 atomic regions from SNP 155789 to 156389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,788 DEBUG Processing 369/730 atomic regions from SNP 110470 to 111070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,795 DEBUG Processing 521/672 atomic regions from SNP 156089 to 156689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,015 DEBUG Processing 522/672 atomic regions from SNP 156389 to 156989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,027 DEBUG Processing 370/730 atomic regions from SNP 110770 to 111370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,233 DEBUG Processing 523/672 atomic regions from SNP 156689 to 157289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,276 DEBUG Processing 371/730 atomic regions from SNP 111070 to 111670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,453 DEBUG Processing 524/672 atomic regions from SNP 156989 to 157589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,530 DEBUG Processing 372/730 atomic regions from SNP 111370 to 111970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,673 DEBUG Processing 525/672 atomic regions from SNP 157289 to 157889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,773 DEBUG Processing 373/730 atomic regions from SNP 111670 to 112270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,889 DEBUG Processing 526/672 atomic regions from SNP 157589 to 158189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,009 DEBUG Processing 374/730 atomic regions from SNP 111970 to 112570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,105 DEBUG Processing 527/672 atomic regions from SNP 157889 to 158489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,254 DEBUG Processing 375/730 atomic regions from SNP 112270 to 112870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,325 DEBUG Processing 528/672 atomic regions from SNP 158189 to 158789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,518 DEBUG Processing 376/730 atomic regions from SNP 112570 to 113170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,554 DEBUG Processing 529/672 atomic regions from SNP 158489 to 159089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,775 DEBUG Processing 377/730 atomic regions from SNP 112870 to 113470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,784 DEBUG Processing 530/672 atomic regions from SNP 158789 to 159389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,004 DEBUG Processing 531/672 atomic regions from SNP 159089 to 159689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,027 DEBUG Processing 378/730 atomic regions from SNP 113170 to 113770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,226 DEBUG Processing 532/672 atomic regions from SNP 159389 to 159989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,271 DEBUG Processing 379/730 atomic regions from SNP 113470 to 114070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,454 DEBUG Processing 533/672 atomic regions from SNP 159689 to 160289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,509 DEBUG Processing 380/730 atomic regions from SNP 113770 to 114370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,677 DEBUG Processing 534/672 atomic regions from SNP 159989 to 160589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,686 DEBUG Subchromosome time: 227.6261312610004, subchromosome SNPs: 222356 2025-01-31 09:52:05,686 DEBUG Estimated BADs: [3.41, 0.34, 0.85, 1.71, 0.57, 1.71, 0.57, 1.71, 0.34, 0.57, 5.12, 0.85, 6.82, 3.41, 1.71, 5.12, 1.71, 3.41, 0.34, 1.71, 3.41, 1.71, 3.41, 6.82, 3.41] SNP counts: [2786, 3905, 4535, 30326, 4200, 12299, 11383, 9604, 6905, 12666, 355, 14866, 2437, 2496, 19524, 2568, 17127, 4223, 11341, 4224, 3982, 17299, 4799, 9301, 9205] SNP IDs counts: [2786, 3905, 4535, 30326, 4200, 12299, 11383, 9604, 6905, 12666, 355, 14866, 2437, 2496, 19524, 2568, 17127, 4223, 11341, 4224, 3982, 17299, 4799, 9301, 9205] Critical gap: 614887bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.71Mbp, 7.08Mbp, 9.61Mbp, 27.91Mbp, 30.40Mbp, 37.13Mbp, 43.88Mbp, 49.10Mbp, 53.11Mbp, 60.80Mbp, 61.00Mbp, 69.61Mbp, 70.91Mbp, 72.44Mbp, 83.57Mbp, 84.90Mbp, 94.11Mbp, 96.38Mbp, 102.90Mbp, 105.25Mbp, 107.35Mbp, 116.87Mbp, 119.39Mbp, 124.33Mbp, 129.40Mbp] 2025-01-31 09:52:05,686 DEBUG chr8 time: 227.6267181619769 s 2025-01-31 09:52:05,749 DEBUG Processing 381/730 atomic regions from SNP 114070 to 114670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,830 DEBUG chr8: Fitting background model for 25 segments 2025-01-31 09:52:05,910 DEBUG Processing 535/672 atomic regions from SNP 160289 to 160889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,010 DEBUG Processing 382/730 atomic regions from SNP 114370 to 114970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,130 DEBUG Processing 536/672 atomic regions from SNP 160589 to 161189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,267 DEBUG Processing 383/730 atomic regions from SNP 114670 to 115270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,378 DEBUG Processing 537/672 atomic regions from SNP 160889 to 161489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,505 DEBUG Processing 384/730 atomic regions from SNP 114970 to 115570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,608 DEBUG Processing 538/672 atomic regions from SNP 161189 to 161789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,738 DEBUG Processing 385/730 atomic regions from SNP 115270 to 115870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,822 DEBUG Processing 539/672 atomic regions from SNP 161489 to 162089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,985 DEBUG Processing 386/730 atomic regions from SNP 115570 to 116170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,039 DEBUG Processing 540/672 atomic regions from SNP 161789 to 162389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,252 DEBUG Processing 387/730 atomic regions from SNP 115870 to 116470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,312 DEBUG Processing 541/672 atomic regions from SNP 162089 to 162689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,635 DEBUG Processing 388/730 atomic regions from SNP 116170 to 116770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,635 DEBUG Processing 542/672 atomic regions from SNP 162389 to 162989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,957 DEBUG Processing 543/672 atomic regions from SNP 162689 to 163289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,982 DEBUG Processing 389/730 atomic regions from SNP 116470 to 117070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,360 DEBUG Processing 544/672 atomic regions from SNP 162989 to 163589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,395 DEBUG Processing 390/730 atomic regions from SNP 116770 to 117370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,827 DEBUG Processing 545/672 atomic regions from SNP 163289 to 163889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,867 DEBUG Processing 391/730 atomic regions from SNP 117070 to 117670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,276 DEBUG Processing 546/672 atomic regions from SNP 163589 to 164189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,331 DEBUG Processing 392/730 atomic regions from SNP 117370 to 117970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,804 DEBUG Processing 547/672 atomic regions from SNP 163889 to 164489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,884 DEBUG Processing 393/730 atomic regions from SNP 117670 to 118270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,376 DEBUG Processing 548/672 atomic regions from SNP 164189 to 164789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,456 DEBUG Processing 394/730 atomic regions from SNP 117970 to 118570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,784 DEBUG Processing 549/672 atomic regions from SNP 164489 to 165089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,873 DEBUG Processing 395/730 atomic regions from SNP 118270 to 118870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,077 DEBUG Processing 550/672 atomic regions from SNP 164789 to 165389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,166 DEBUG Processing 396/730 atomic regions from SNP 118570 to 119170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,441 DEBUG Processing 551/672 atomic regions from SNP 165089 to 165689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,551 DEBUG Processing 397/730 atomic regions from SNP 118870 to 119470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,847 DEBUG Processing 552/672 atomic regions from SNP 165389 to 165989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,005 DEBUG Processing 398/730 atomic regions from SNP 119170 to 119770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,299 DEBUG Processing 553/672 atomic regions from SNP 165689 to 166289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,433 DEBUG Processing 399/730 atomic regions from SNP 119470 to 120070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,709 DEBUG Processing 554/672 atomic regions from SNP 165989 to 166589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,884 DEBUG Processing 400/730 atomic regions from SNP 119770 to 120370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,088 DEBUG Processing 555/672 atomic regions from SNP 166289 to 166889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,297 DEBUG Processing 401/730 atomic regions from SNP 120070 to 120670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,465 DEBUG Processing 556/672 atomic regions from SNP 166589 to 167189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,714 DEBUG Processing 402/730 atomic regions from SNP 120370 to 120970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,897 DEBUG Processing 557/672 atomic regions from SNP 166889 to 167489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,050 DEBUG Processing 403/730 atomic regions from SNP 120670 to 121270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,183 DEBUG Processing 558/672 atomic regions from SNP 167189 to 167789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,455 DEBUG Processing 404/730 atomic regions from SNP 120970 to 121570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,559 DEBUG Processing 559/672 atomic regions from SNP 167489 to 168089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,903 DEBUG Processing 405/730 atomic regions from SNP 121270 to 121870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,978 DEBUG Processing 560/672 atomic regions from SNP 167789 to 168389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,441 DEBUG Processing 406/730 atomic regions from SNP 121570 to 122170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,484 DEBUG Processing 561/672 atomic regions from SNP 168089 to 168689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,845 DEBUG Processing 407/730 atomic regions from SNP 121870 to 122470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,869 DEBUG Processing 562/672 atomic regions from SNP 168389 to 168989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,287 DEBUG Processing 408/730 atomic regions from SNP 122170 to 122770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,307 DEBUG Processing 563/672 atomic regions from SNP 168689 to 169289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,841 DEBUG Processing 564/672 atomic regions from SNP 168989 to 169589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,867 DEBUG Processing 409/730 atomic regions from SNP 122470 to 123070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,313 DEBUG Processing 565/672 atomic regions from SNP 169289 to 169889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,334 DEBUG Processing 410/730 atomic regions from SNP 122770 to 123370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,023 DEBUG Processing 566/672 atomic regions from SNP 169589 to 170189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,108 DEBUG Processing 411/730 atomic regions from SNP 123070 to 123670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,561 DEBUG Processing 567/672 atomic regions from SNP 169889 to 170489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,621 DEBUG Processing 412/730 atomic regions from SNP 123370 to 123970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,082 DEBUG Processing 568/672 atomic regions from SNP 170189 to 170789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,180 DEBUG Processing 413/730 atomic regions from SNP 123670 to 124270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,592 DEBUG Processing 569/672 atomic regions from SNP 170489 to 171089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,624 DEBUG Processing 414/730 atomic regions from SNP 123970 to 124570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,874 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:52:19,925 DEBUG chr13: Signal quantile: 0.995. signal threshold: 16. Best RMSEA: 0.016 2025-01-31 09:52:19,969 DEBUG Processing 570/672 atomic regions from SNP 170789 to 171389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,011 DEBUG Processing 415/730 atomic regions from SNP 124270 to 124870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,361 DEBUG Processing 571/672 atomic regions from SNP 171089 to 171689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,453 DEBUG Processing 416/730 atomic regions from SNP 124570 to 125170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,787 DEBUG Processing 572/672 atomic regions from SNP 171389 to 171989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,878 DEBUG Processing 417/730 atomic regions from SNP 124870 to 125470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,208 DEBUG Processing 573/672 atomic regions from SNP 171689 to 172289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,322 DEBUG Processing 418/730 atomic regions from SNP 125170 to 125770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,514 DEBUG Processing 574/672 atomic regions from SNP 171989 to 172589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,586 DEBUG Processing 419/730 atomic regions from SNP 125470 to 126070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,918 DEBUG Processing 575/672 atomic regions from SNP 172289 to 172889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,972 DEBUG Processing 420/730 atomic regions from SNP 125770 to 126370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,277 DEBUG Processing 576/672 atomic regions from SNP 172589 to 173189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,318 DEBUG Processing 421/730 atomic regions from SNP 126070 to 126670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,584 DEBUG Processing 577/672 atomic regions from SNP 172889 to 173489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,689 DEBUG Processing 422/730 atomic regions from SNP 126370 to 126970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,877 DEBUG Processing 578/672 atomic regions from SNP 173189 to 173789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,994 DEBUG Processing 423/730 atomic regions from SNP 126670 to 127270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,129 DEBUG Processing 579/672 atomic regions from SNP 173489 to 174089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,236 DEBUG Processing 424/730 atomic regions from SNP 126970 to 127570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,345 DEBUG Processing 580/672 atomic regions from SNP 173789 to 174389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,458 DEBUG Processing 425/730 atomic regions from SNP 127270 to 127870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,570 DEBUG Processing 581/672 atomic regions from SNP 174089 to 174689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,760 DEBUG Processing 426/730 atomic regions from SNP 127570 to 128170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,815 DEBUG Processing 582/672 atomic regions from SNP 174389 to 174989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,930 DEBUG chr13 total SNP count: 205354 2025-01-31 09:52:23,931 DEBUG chr13 length: 120421639 2025-01-31 09:52:23,931 DEBUG ----------------------------------------- 2025-01-31 09:52:23,931 INFO Processing SNPs in chr13 2025-01-31 09:52:24,016 DEBUG Processing 427/730 atomic regions from SNP 127870 to 128470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,131 DEBUG Processing 583/672 atomic regions from SNP 174689 to 175289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,161 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 205354)] 2025-01-31 09:52:24,234 DEBUG Processing 428/730 atomic regions from SNP 128170 to 128770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,306 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:24,344 DEBUG Processing 584/672 atomic regions from SNP 174989 to 175589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,449 DEBUG Processing 429/730 atomic regions from SNP 128470 to 129070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,555 DEBUG Processing 585/672 atomic regions from SNP 175289 to 175889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,680 DEBUG Processing 430/730 atomic regions from SNP 128770 to 129370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,813 DEBUG Segmenting atomic regions: 2025-01-31 09:52:24,824 DEBUG Processing 586/672 atomic regions from SNP 175589 to 176189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,913 DEBUG Processing 431/730 atomic regions from SNP 129070 to 129670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,917 DEBUG Processing 1/724 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,037 DEBUG Processing 587/672 atomic regions from SNP 175889 to 176489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,152 DEBUG Processing 432/730 atomic regions from SNP 129370 to 129970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,195 DEBUG Processing 2/724 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,245 DEBUG Processing 588/672 atomic regions from SNP 176189 to 176789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,376 DEBUG Processing 433/730 atomic regions from SNP 129670 to 130270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,435 DEBUG Processing 3/724 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,457 DEBUG Processing 589/672 atomic regions from SNP 176489 to 177089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,597 DEBUG Processing 434/730 atomic regions from SNP 129970 to 130570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,667 DEBUG Processing 4/724 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,672 DEBUG Processing 590/672 atomic regions from SNP 176789 to 177389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,824 DEBUG Processing 435/730 atomic regions from SNP 130270 to 130870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,889 DEBUG Processing 591/672 atomic regions from SNP 177089 to 177689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,897 DEBUG Processing 5/724 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,037 DEBUG Processing 436/730 atomic regions from SNP 130570 to 131170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,105 DEBUG Processing 592/672 atomic regions from SNP 177389 to 177989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,133 DEBUG Processing 6/724 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,250 DEBUG Processing 437/730 atomic regions from SNP 130870 to 131470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,317 DEBUG Processing 593/672 atomic regions from SNP 177689 to 178289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,378 DEBUG Processing 7/724 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,465 DEBUG Processing 438/730 atomic regions from SNP 131170 to 131770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,530 DEBUG Processing 594/672 atomic regions from SNP 177989 to 178589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,623 DEBUG Processing 8/724 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,706 DEBUG Processing 439/730 atomic regions from SNP 131470 to 132070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,749 DEBUG Processing 595/672 atomic regions from SNP 178289 to 178889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,865 DEBUG Processing 9/724 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,951 DEBUG Processing 440/730 atomic regions from SNP 131770 to 132370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,973 DEBUG Processing 596/672 atomic regions from SNP 178589 to 179189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,093 DEBUG Processing 10/724 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,173 DEBUG Processing 441/730 atomic regions from SNP 132070 to 132670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,191 DEBUG Processing 597/672 atomic regions from SNP 178889 to 179489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,342 DEBUG Processing 11/724 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,402 DEBUG Processing 442/730 atomic regions from SNP 132370 to 132970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,415 DEBUG Processing 598/672 atomic regions from SNP 179189 to 179789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,614 DEBUG Processing 12/724 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,655 DEBUG Processing 599/672 atomic regions from SNP 179489 to 180089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,666 DEBUG Processing 443/730 atomic regions from SNP 132670 to 133270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,870 DEBUG Processing 13/724 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,877 DEBUG Processing 600/672 atomic regions from SNP 179789 to 180389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,891 DEBUG Processing 444/730 atomic regions from SNP 132970 to 133570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,096 DEBUG Processing 601/672 atomic regions from SNP 180089 to 180689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,115 DEBUG Processing 445/730 atomic regions from SNP 133270 to 133870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,120 DEBUG Processing 14/724 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,322 DEBUG Processing 602/672 atomic regions from SNP 180389 to 180989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,344 DEBUG Processing 446/730 atomic regions from SNP 133570 to 134170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,349 DEBUG Processing 15/724 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,551 DEBUG Processing 603/672 atomic regions from SNP 180689 to 181289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,577 DEBUG Processing 447/730 atomic regions from SNP 133870 to 134470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,592 DEBUG Processing 16/724 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,777 DEBUG Processing 604/672 atomic regions from SNP 180989 to 181589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,812 DEBUG Processing 448/730 atomic regions from SNP 134170 to 134770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,845 DEBUG Processing 17/724 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,049 DEBUG Processing 605/672 atomic regions from SNP 181289 to 181889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,066 DEBUG Processing 449/730 atomic regions from SNP 134470 to 135070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,113 DEBUG Processing 18/724 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,312 DEBUG Processing 606/672 atomic regions from SNP 181589 to 182189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,345 DEBUG Processing 450/730 atomic regions from SNP 134770 to 135370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,408 DEBUG Processing 19/724 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,537 DEBUG Processing 607/672 atomic regions from SNP 181889 to 182489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,570 DEBUG Processing 451/730 atomic regions from SNP 135070 to 135670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,664 DEBUG Processing 20/724 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,760 DEBUG Processing 608/672 atomic regions from SNP 182189 to 182789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,794 DEBUG Processing 452/730 atomic regions from SNP 135370 to 135970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,924 DEBUG Processing 21/724 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,997 DEBUG Processing 609/672 atomic regions from SNP 182489 to 183089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,045 DEBUG Processing 453/730 atomic regions from SNP 135670 to 136270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,327 DEBUG Processing 610/672 atomic regions from SNP 182789 to 183389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,331 DEBUG Processing 22/724 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,406 DEBUG Processing 454/730 atomic regions from SNP 135970 to 136570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,761 DEBUG Processing 611/672 atomic regions from SNP 183089 to 183689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,763 DEBUG Processing 23/724 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,772 DEBUG Processing 455/730 atomic regions from SNP 136270 to 136870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,062 DEBUG Processing 612/672 atomic regions from SNP 183389 to 183989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,073 DEBUG Processing 24/724 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,136 DEBUG Processing 456/730 atomic regions from SNP 136570 to 137170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,379 DEBUG Processing 613/672 atomic regions from SNP 183689 to 184289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,398 DEBUG Processing 25/724 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,463 DEBUG Processing 457/730 atomic regions from SNP 136870 to 137470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,606 DEBUG Processing 614/672 atomic regions from SNP 183989 to 184589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,653 DEBUG Processing 26/724 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,726 DEBUG Processing 458/730 atomic regions from SNP 137170 to 137770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,827 DEBUG Processing 615/672 atomic regions from SNP 184289 to 184889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,898 DEBUG Processing 27/724 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,957 DEBUG Processing 459/730 atomic regions from SNP 137470 to 138070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,038 DEBUG Processing 616/672 atomic regions from SNP 184589 to 185189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,130 DEBUG Processing 28/724 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,183 DEBUG Processing 460/730 atomic regions from SNP 137770 to 138370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,253 DEBUG Processing 617/672 atomic regions from SNP 184889 to 185489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,367 DEBUG Processing 29/724 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,413 DEBUG Processing 461/730 atomic regions from SNP 138070 to 138670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,464 DEBUG Processing 618/672 atomic regions from SNP 185189 to 185789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,618 DEBUG Processing 30/724 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,654 DEBUG Processing 462/730 atomic regions from SNP 138370 to 138970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,683 DEBUG Processing 619/672 atomic regions from SNP 185489 to 186089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,879 DEBUG Processing 463/730 atomic regions from SNP 138670 to 139270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,880 DEBUG Processing 31/724 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,901 DEBUG Processing 620/672 atomic regions from SNP 185789 to 186389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,127 DEBUG Processing 464/730 atomic regions from SNP 138970 to 139570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,138 DEBUG Processing 32/724 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,142 DEBUG Processing 621/672 atomic regions from SNP 186089 to 186689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,359 DEBUG Processing 465/730 atomic regions from SNP 139270 to 139870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,374 DEBUG Processing 33/724 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,387 DEBUG Processing 622/672 atomic regions from SNP 186389 to 186989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,575 DEBUG Processing 466/730 atomic regions from SNP 139570 to 140170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,595 DEBUG Processing 34/724 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,601 DEBUG Processing 623/672 atomic regions from SNP 186689 to 187289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,804 DEBUG Processing 467/730 atomic regions from SNP 139870 to 140470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,822 DEBUG Processing 624/672 atomic regions from SNP 186989 to 187589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,825 DEBUG Processing 35/724 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,029 DEBUG Processing 468/730 atomic regions from SNP 140170 to 140770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,052 DEBUG Processing 625/672 atomic regions from SNP 187289 to 187889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,066 DEBUG Processing 36/724 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,260 DEBUG Processing 469/730 atomic regions from SNP 140470 to 141070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,269 DEBUG Processing 626/672 atomic regions from SNP 187589 to 188189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,308 DEBUG Processing 37/724 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,491 DEBUG Processing 470/730 atomic regions from SNP 140770 to 141370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,502 DEBUG Processing 627/672 atomic regions from SNP 187889 to 188489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,561 DEBUG Processing 38/724 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,729 DEBUG Processing 471/730 atomic regions from SNP 141070 to 141670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,732 DEBUG Processing 628/672 atomic regions from SNP 188189 to 188789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,808 DEBUG Processing 39/724 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,950 DEBUG Processing 629/672 atomic regions from SNP 188489 to 189089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,954 DEBUG Processing 472/730 atomic regions from SNP 141370 to 141970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,051 DEBUG Processing 40/724 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,164 DEBUG Processing 630/672 atomic regions from SNP 188789 to 189389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,179 DEBUG Processing 473/730 atomic regions from SNP 141670 to 142270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,276 DEBUG Processing 41/724 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,378 DEBUG Processing 631/672 atomic regions from SNP 189089 to 189689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,403 DEBUG Processing 474/730 atomic regions from SNP 141970 to 142570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,512 DEBUG Processing 42/724 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,610 DEBUG Processing 632/672 atomic regions from SNP 189389 to 189989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,659 DEBUG Processing 475/730 atomic regions from SNP 142270 to 142870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,978 DEBUG Processing 43/724 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,995 DEBUG Processing 633/672 atomic regions from SNP 189689 to 190289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,024 DEBUG Processing 476/730 atomic regions from SNP 142570 to 143170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,224 DEBUG Processing 634/672 atomic regions from SNP 189989 to 190589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,231 DEBUG Processing 44/724 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,266 DEBUG Processing 477/730 atomic regions from SNP 142870 to 143470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,447 DEBUG Processing 635/672 atomic regions from SNP 190289 to 190889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,467 DEBUG Processing 45/724 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,502 DEBUG Processing 478/730 atomic regions from SNP 143170 to 143770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,668 DEBUG Processing 636/672 atomic regions from SNP 190589 to 191189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,707 DEBUG Processing 46/724 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,743 DEBUG Processing 479/730 atomic regions from SNP 143470 to 144070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,991 DEBUG Processing 637/672 atomic regions from SNP 190889 to 191489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,044 DEBUG Processing 47/724 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,045 DEBUG Processing 480/730 atomic regions from SNP 143770 to 144370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,226 DEBUG Processing 638/672 atomic regions from SNP 191189 to 191789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,277 DEBUG Processing 481/730 atomic regions from SNP 144070 to 144670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,285 DEBUG Processing 48/724 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,447 DEBUG Processing 639/672 atomic regions from SNP 191489 to 192089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,506 DEBUG Processing 482/730 atomic regions from SNP 144370 to 144970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,522 DEBUG Processing 49/724 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,659 DEBUG Processing 640/672 atomic regions from SNP 191789 to 192389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,727 DEBUG Processing 483/730 atomic regions from SNP 144670 to 145270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,751 DEBUG Processing 50/724 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,799 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:52:37,868 DEBUG Processing 641/672 atomic regions from SNP 192089 to 192689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,947 DEBUG Processing 484/730 atomic regions from SNP 144970 to 145570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,973 DEBUG Processing 51/724 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,067 DEBUG Processing 642/672 atomic regions from SNP 192389 to 192989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,165 DEBUG Processing 485/730 atomic regions from SNP 145270 to 145870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,202 DEBUG Processing 52/724 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,270 DEBUG Processing 643/672 atomic regions from SNP 192689 to 193289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,385 DEBUG Processing 486/730 atomic regions from SNP 145570 to 146170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,422 DEBUG Processing 53/724 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,474 DEBUG Processing 644/672 atomic regions from SNP 192989 to 193589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,597 DEBUG Processing 487/730 atomic regions from SNP 145870 to 146470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,641 DEBUG Processing 54/724 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,679 DEBUG Processing 645/672 atomic regions from SNP 193289 to 193889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,811 DEBUG Processing 488/730 atomic regions from SNP 146170 to 146770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,861 DEBUG Processing 55/724 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,884 DEBUG Processing 646/672 atomic regions from SNP 193589 to 194189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,031 DEBUG Processing 489/730 atomic regions from SNP 146470 to 147070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,087 DEBUG Processing 56/724 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,092 DEBUG Processing 647/672 atomic regions from SNP 193889 to 194489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,247 DEBUG Processing 490/730 atomic regions from SNP 146770 to 147370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,299 DEBUG Processing 648/672 atomic regions from SNP 194189 to 194789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,311 DEBUG Processing 57/724 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,459 DEBUG Processing 491/730 atomic regions from SNP 147070 to 147670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,503 DEBUG Processing 649/672 atomic regions from SNP 194489 to 195089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,539 DEBUG Processing 58/724 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,668 DEBUG Processing 492/730 atomic regions from SNP 147370 to 147970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,705 DEBUG Processing 650/672 atomic regions from SNP 194789 to 195389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,771 DEBUG Processing 59/724 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,879 DEBUG Processing 493/730 atomic regions from SNP 147670 to 148270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,908 DEBUG Processing 651/672 atomic regions from SNP 195089 to 195689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,000 DEBUG Processing 60/724 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,094 DEBUG Processing 494/730 atomic regions from SNP 147970 to 148570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,118 DEBUG Processing 652/672 atomic regions from SNP 195389 to 195989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,233 DEBUG Processing 61/724 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,312 DEBUG Processing 495/730 atomic regions from SNP 148270 to 148870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,332 DEBUG Processing 653/672 atomic regions from SNP 195689 to 196289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,465 DEBUG Processing 62/724 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,531 DEBUG Processing 496/730 atomic regions from SNP 148570 to 149170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,562 DEBUG Processing 654/672 atomic regions from SNP 195989 to 196589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,699 DEBUG Processing 63/724 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,746 DEBUG Processing 497/730 atomic regions from SNP 148870 to 149470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,785 DEBUG Processing 655/672 atomic regions from SNP 196289 to 196889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,944 DEBUG Processing 64/724 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,964 DEBUG Processing 498/730 atomic regions from SNP 149170 to 149770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,010 DEBUG Processing 656/672 atomic regions from SNP 196589 to 197189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,175 DEBUG Processing 499/730 atomic regions from SNP 149470 to 150070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,184 DEBUG Processing 65/724 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,237 DEBUG Processing 657/672 atomic regions from SNP 196889 to 197489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,386 DEBUG Processing 500/730 atomic regions from SNP 149770 to 150370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,419 DEBUG Processing 66/724 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,460 DEBUG Processing 658/672 atomic regions from SNP 197189 to 197789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,600 DEBUG Processing 501/730 atomic regions from SNP 150070 to 150670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,656 DEBUG Processing 67/724 atomic regions from SNP 19866 to 20467 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,688 DEBUG Processing 659/672 atomic regions from SNP 197489 to 198089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,812 DEBUG Processing 502/730 atomic regions from SNP 150370 to 150970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,893 DEBUG Processing 68/724 atomic regions from SNP 20167 to 20768 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,895 DEBUG Processing 660/672 atomic regions from SNP 197789 to 198389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,028 DEBUG Processing 503/730 atomic regions from SNP 150670 to 151270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,106 DEBUG Processing 661/672 atomic regions from SNP 198089 to 198689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,133 DEBUG Processing 69/724 atomic regions from SNP 20468 to 21069 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,235 DEBUG Processing 504/730 atomic regions from SNP 150970 to 151570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,310 DEBUG Processing 662/672 atomic regions from SNP 198389 to 198989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,377 DEBUG Processing 70/724 atomic regions from SNP 20769 to 21370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,445 DEBUG Processing 505/730 atomic regions from SNP 151270 to 151870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,514 DEBUG Processing 663/672 atomic regions from SNP 198689 to 199289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,625 DEBUG Processing 71/724 atomic regions from SNP 21070 to 21671 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,655 DEBUG Processing 506/730 atomic regions from SNP 151570 to 152170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,717 DEBUG Processing 664/672 atomic regions from SNP 198989 to 199589 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,867 DEBUG Processing 507/730 atomic regions from SNP 151870 to 152470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,873 DEBUG Processing 72/724 atomic regions from SNP 21371 to 21972 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,918 DEBUG Processing 665/672 atomic regions from SNP 199289 to 199889 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,076 DEBUG Processing 508/730 atomic regions from SNP 152170 to 152770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,107 DEBUG Processing 73/724 atomic regions from SNP 21672 to 22273 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,120 DEBUG Processing 666/672 atomic regions from SNP 199589 to 200189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,284 DEBUG Processing 509/730 atomic regions from SNP 152470 to 153070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,323 DEBUG Processing 667/672 atomic regions from SNP 199889 to 200489 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,339 DEBUG Processing 74/724 atomic regions from SNP 21973 to 22574 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,491 DEBUG Processing 510/730 atomic regions from SNP 152770 to 153370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,526 DEBUG Processing 668/672 atomic regions from SNP 200189 to 200789 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,569 DEBUG Processing 75/724 atomic regions from SNP 22274 to 22875 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,699 DEBUG Processing 511/730 atomic regions from SNP 153070 to 153670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,728 DEBUG Processing 669/672 atomic regions from SNP 200489 to 201089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,798 DEBUG Processing 76/724 atomic regions from SNP 22575 to 23176 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,909 DEBUG Processing 512/730 atomic regions from SNP 153370 to 153970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,930 DEBUG Processing 670/672 atomic regions from SNP 200789 to 201389 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,025 DEBUG Processing 77/724 atomic regions from SNP 22876 to 23477 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,120 DEBUG Processing 513/730 atomic regions from SNP 153670 to 154270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,138 DEBUG Processing 671/672 atomic regions from SNP 201089 to 201689 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,252 DEBUG Processing 78/724 atomic regions from SNP 23177 to 23778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,335 DEBUG Processing 514/730 atomic regions from SNP 153970 to 154570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,348 DEBUG Processing 672/672 atomic regions from SNP 201389 to 201989 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,473 DEBUG Unique SNPs positions in subchromosome 2: 201990 2025-01-31 09:52:44,475 DEBUG Processing 79/724 atomic regions from SNP 23478 to 24079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,549 DEBUG Processing 515/730 atomic regions from SNP 154270 to 154870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,699 DEBUG Processing 80/724 atomic regions from SNP 23779 to 24380 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,757 DEBUG Processing 516/730 atomic regions from SNP 154570 to 155170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,925 DEBUG Processing 81/724 atomic regions from SNP 24080 to 24681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,965 DEBUG Processing 517/730 atomic regions from SNP 154870 to 155470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,148 DEBUG Processing 82/724 atomic regions from SNP 24381 to 24982 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,174 DEBUG Processing 518/730 atomic regions from SNP 155170 to 155770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,372 DEBUG Processing 83/724 atomic regions from SNP 24682 to 25283 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,385 DEBUG Processing 519/730 atomic regions from SNP 155470 to 156070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,596 DEBUG Processing 520/730 atomic regions from SNP 155770 to 156370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,597 DEBUG Processing 84/724 atomic regions from SNP 24983 to 25584 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,803 DEBUG Processing 521/730 atomic regions from SNP 156070 to 156670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,824 DEBUG Processing 85/724 atomic regions from SNP 25284 to 25885 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,009 DEBUG Processing 522/730 atomic regions from SNP 156370 to 156970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,053 DEBUG Processing 86/724 atomic regions from SNP 25585 to 26186 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,216 DEBUG Processing 523/730 atomic regions from SNP 156670 to 157270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,279 DEBUG Processing 87/724 atomic regions from SNP 25886 to 26487 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,442 DEBUG Processing 524/730 atomic regions from SNP 156970 to 157570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,508 DEBUG Processing 88/724 atomic regions from SNP 26187 to 26788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,655 DEBUG Processing 525/730 atomic regions from SNP 157270 to 157870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,738 DEBUG Processing 89/724 atomic regions from SNP 26488 to 27089 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,869 DEBUG Processing 526/730 atomic regions from SNP 157570 to 158170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,972 DEBUG Processing 90/724 atomic regions from SNP 26789 to 27390 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,084 DEBUG Processing 527/730 atomic regions from SNP 157870 to 158470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,202 DEBUG Processing 91/724 atomic regions from SNP 27090 to 27691 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,294 DEBUG Processing 528/730 atomic regions from SNP 158170 to 158770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,428 DEBUG Processing 92/724 atomic regions from SNP 27391 to 27992 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,510 DEBUG Processing 529/730 atomic regions from SNP 158470 to 159070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,652 DEBUG Processing 93/724 atomic regions from SNP 27692 to 28293 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,731 DEBUG Processing 530/730 atomic regions from SNP 158770 to 159370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,875 DEBUG Processing 94/724 atomic regions from SNP 27993 to 28594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,957 DEBUG Processing 531/730 atomic regions from SNP 159070 to 159670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,099 DEBUG Processing 95/724 atomic regions from SNP 28294 to 28895 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,172 DEBUG Processing 532/730 atomic regions from SNP 159370 to 159970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,320 DEBUG Processing 96/724 atomic regions from SNP 28595 to 29196 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,388 DEBUG Processing 533/730 atomic regions from SNP 159670 to 160270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,541 DEBUG Processing 97/724 atomic regions from SNP 28896 to 29497 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,605 DEBUG Processing 534/730 atomic regions from SNP 159970 to 160570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,763 DEBUG Processing 98/724 atomic regions from SNP 29197 to 29798 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,823 DEBUG Processing 535/730 atomic regions from SNP 160270 to 160870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,992 DEBUG Processing 99/724 atomic regions from SNP 29498 to 30099 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,042 DEBUG Processing 536/730 atomic regions from SNP 160570 to 161170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,224 DEBUG Processing 100/724 atomic regions from SNP 29799 to 30400 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,254 DEBUG Processing 537/730 atomic regions from SNP 160870 to 161470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,458 DEBUG Processing 101/724 atomic regions from SNP 30100 to 30701 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,462 DEBUG Processing 538/730 atomic regions from SNP 161170 to 161770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,673 DEBUG Processing 539/730 atomic regions from SNP 161470 to 162070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,693 DEBUG Processing 102/724 atomic regions from SNP 30401 to 31002 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,885 DEBUG Processing 540/730 atomic regions from SNP 161770 to 162370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,929 DEBUG Processing 103/724 atomic regions from SNP 30702 to 31303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,095 DEBUG Processing 541/730 atomic regions from SNP 162070 to 162670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,105 DEBUG Segmenting atomic regions: 2025-01-31 09:52:50,146 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:52:50,148 DEBUG chr12: Signal quantile: 0.995. signal threshold: 11. Best RMSEA: 0.025 2025-01-31 09:52:50,164 DEBUG Processing 104/724 atomic regions from SNP 31003 to 31604 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,197 DEBUG Processing 1/683 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,310 DEBUG Processing 542/730 atomic regions from SNP 162370 to 162970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,398 DEBUG Processing 105/724 atomic regions from SNP 31304 to 31905 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,429 DEBUG Processing 2/683 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,517 DEBUG Processing 543/730 atomic regions from SNP 162670 to 163270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,632 DEBUG Processing 106/724 atomic regions from SNP 31605 to 32206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,659 DEBUG Processing 3/683 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,730 DEBUG Processing 544/730 atomic regions from SNP 162970 to 163570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,860 DEBUG Processing 107/724 atomic regions from SNP 31906 to 32507 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,900 DEBUG Processing 4/683 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,943 DEBUG Processing 545/730 atomic regions from SNP 163270 to 163870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,086 DEBUG Processing 108/724 atomic regions from SNP 32207 to 32808 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,142 DEBUG Processing 5/683 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,159 DEBUG Processing 546/730 atomic regions from SNP 163570 to 164170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,312 DEBUG Processing 109/724 atomic regions from SNP 32508 to 33109 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,373 DEBUG Processing 547/730 atomic regions from SNP 163870 to 164470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,378 DEBUG Processing 6/683 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,536 DEBUG Processing 110/724 atomic regions from SNP 32809 to 33410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,586 DEBUG Processing 548/730 atomic regions from SNP 164170 to 164770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,614 DEBUG Processing 7/683 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,763 DEBUG Processing 111/724 atomic regions from SNP 33110 to 33711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,803 DEBUG Processing 549/730 atomic regions from SNP 164470 to 165070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,850 DEBUG Processing 8/683 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,986 DEBUG Processing 112/724 atomic regions from SNP 33411 to 34012 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,018 DEBUG Processing 550/730 atomic regions from SNP 164770 to 165370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,079 DEBUG Processing 9/683 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,096 DEBUG Subchromosome time: 190.75909081299324, subchromosome SNPs: 201990 2025-01-31 09:52:52,097 DEBUG Estimated BADs: [0.38, 1.13, 2.25, 1.13, 2.25, 1.13, 2.25, 1.13, 0.28, 1.13, 0.28, 0.56, 0.28, 1.13] SNP counts: [182, 21144, 27343, 23881, 25319, 7252, 1746, 18617, 8060, 5117, 16510, 14388, 17399, 15214] SNP IDs counts: [182, 21144, 27343, 23881, 25319, 7252, 1746, 18617, 8060, 5117, 16510, 14388, 17399, 15214] Critical gap: 618507bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.13Mbp[0.71Mbp], 19.64Mbp, 34.61Mbp, 50.78Mbp, 65.34Mbp, 69.23Mbp, 70.58Mbp, 80.78Mbp, 85.57Mbp, 88.48Mbp, 98.03Mbp, 106.05Mbp, 116.24Mbp, 124.90Mbp] 2025-01-31 09:52:52,097 DEBUG chr14 time: 190.7596076260088 s 2025-01-31 09:52:52,203 DEBUG Processing 113/724 atomic regions from SNP 33712 to 34313 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,211 DEBUG chr14: Fitting background model for 14 segments 2025-01-31 09:52:52,232 DEBUG Processing 551/730 atomic regions from SNP 165070 to 165670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,309 DEBUG Processing 10/683 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,410 DEBUG chr12 total SNP count: 200850 2025-01-31 09:52:52,410 DEBUG chr12 length: 120129022 2025-01-31 09:52:52,410 DEBUG ----------------------------------------- 2025-01-31 09:52:52,410 INFO Processing SNPs in chr12 2025-01-31 09:52:52,429 DEBUG Processing 114/724 atomic regions from SNP 34013 to 34614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,450 DEBUG Processing 552/730 atomic regions from SNP 165370 to 165970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,541 DEBUG Processing 11/683 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,611 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 200850)] 2025-01-31 09:52:52,648 DEBUG Processing 115/724 atomic regions from SNP 34314 to 34915 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,662 DEBUG Processing 553/730 atomic regions from SNP 165670 to 166270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,748 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:52,766 DEBUG Processing 12/683 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,874 DEBUG Processing 116/724 atomic regions from SNP 34615 to 35216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,877 DEBUG Processing 554/730 atomic regions from SNP 165970 to 166570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,995 DEBUG Processing 13/683 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,096 DEBUG Processing 555/730 atomic regions from SNP 166270 to 166870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,109 DEBUG Processing 117/724 atomic regions from SNP 34916 to 35517 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,218 DEBUG Processing 14/683 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,311 DEBUG Processing 556/730 atomic regions from SNP 166570 to 167170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,340 DEBUG Processing 118/724 atomic regions from SNP 35217 to 35818 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,442 DEBUG Processing 15/683 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,526 DEBUG Processing 557/730 atomic regions from SNP 166870 to 167470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,559 DEBUG Processing 119/724 atomic regions from SNP 35518 to 36119 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,667 DEBUG Processing 16/683 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,739 DEBUG Processing 558/730 atomic regions from SNP 167170 to 167770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,775 DEBUG Processing 120/724 atomic regions from SNP 35819 to 36420 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,894 DEBUG Processing 17/683 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,967 DEBUG Processing 559/730 atomic regions from SNP 167470 to 168070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,994 DEBUG Processing 121/724 atomic regions from SNP 36120 to 36721 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,111 DEBUG Processing 18/683 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,194 DEBUG Processing 560/730 atomic regions from SNP 167770 to 168370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,213 DEBUG Processing 122/724 atomic regions from SNP 36421 to 37022 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,327 DEBUG Processing 19/683 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,423 DEBUG Processing 561/730 atomic regions from SNP 168070 to 168670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,437 DEBUG Processing 123/724 atomic regions from SNP 36722 to 37323 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,540 DEBUG Processing 20/683 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,651 DEBUG Processing 562/730 atomic regions from SNP 168370 to 168970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,657 DEBUG Processing 124/724 atomic regions from SNP 37023 to 37624 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,758 DEBUG Processing 21/683 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,877 DEBUG Processing 125/724 atomic regions from SNP 37324 to 37925 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,883 DEBUG Processing 563/730 atomic regions from SNP 168670 to 169270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,978 DEBUG Processing 22/683 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,093 DEBUG Processing 126/724 atomic regions from SNP 37625 to 38226 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,099 DEBUG Processing 564/730 atomic regions from SNP 168970 to 169570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,199 DEBUG Processing 23/683 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,312 DEBUG Processing 565/730 atomic regions from SNP 169270 to 169870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,315 DEBUG Processing 127/724 atomic regions from SNP 37926 to 38527 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,424 DEBUG Processing 24/683 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,527 DEBUG Processing 566/730 atomic regions from SNP 169570 to 170170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,535 DEBUG Processing 128/724 atomic regions from SNP 38227 to 38828 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,650 DEBUG Processing 25/683 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,743 DEBUG Processing 567/730 atomic regions from SNP 169870 to 170470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,757 DEBUG Processing 129/724 atomic regions from SNP 38528 to 39129 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,877 DEBUG Processing 26/683 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,960 DEBUG Processing 568/730 atomic regions from SNP 170170 to 170770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,980 DEBUG Processing 130/724 atomic regions from SNP 38829 to 39430 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,094 DEBUG Processing 27/683 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,176 DEBUG Processing 569/730 atomic regions from SNP 170470 to 171070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,201 DEBUG Processing 131/724 atomic regions from SNP 39130 to 39731 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,316 DEBUG Processing 28/683 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,390 DEBUG Processing 570/730 atomic regions from SNP 170770 to 171370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,420 DEBUG Processing 132/724 atomic regions from SNP 39431 to 40032 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,529 DEBUG Processing 29/683 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,602 DEBUG Processing 571/730 atomic regions from SNP 171070 to 171670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,640 DEBUG Processing 133/724 atomic regions from SNP 39732 to 40333 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,741 DEBUG Processing 30/683 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,816 DEBUG Processing 572/730 atomic regions from SNP 171370 to 171970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,861 DEBUG Processing 134/724 atomic regions from SNP 40033 to 40634 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,947 DEBUG Processing 31/683 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,027 DEBUG Processing 573/730 atomic regions from SNP 171670 to 172270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,081 DEBUG Processing 135/724 atomic regions from SNP 40334 to 40935 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,159 DEBUG Processing 32/683 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,246 DEBUG Processing 574/730 atomic regions from SNP 171970 to 172570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,311 DEBUG Processing 136/724 atomic regions from SNP 40635 to 41236 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,377 DEBUG Processing 33/683 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,463 DEBUG Processing 575/730 atomic regions from SNP 172270 to 172870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,540 DEBUG Processing 137/724 atomic regions from SNP 40936 to 41537 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,608 DEBUG Processing 34/683 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,683 DEBUG Processing 576/730 atomic regions from SNP 172570 to 173170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,762 DEBUG Processing 138/724 atomic regions from SNP 41237 to 41838 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,853 DEBUG Processing 35/683 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,916 DEBUG Processing 577/730 atomic regions from SNP 172870 to 173470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,985 DEBUG Processing 139/724 atomic regions from SNP 41538 to 42139 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,111 DEBUG Processing 36/683 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,158 DEBUG Processing 578/730 atomic regions from SNP 173170 to 173770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,200 DEBUG Processing 140/724 atomic regions from SNP 41839 to 42440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,334 DEBUG Processing 37/683 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,395 DEBUG Processing 579/730 atomic regions from SNP 173470 to 174070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,419 DEBUG Processing 141/724 atomic regions from SNP 42140 to 42741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,557 DEBUG Processing 38/683 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,626 DEBUG Processing 580/730 atomic regions from SNP 173770 to 174370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,640 DEBUG Processing 142/724 atomic regions from SNP 42441 to 43042 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,784 DEBUG Processing 39/683 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,850 DEBUG Processing 581/730 atomic regions from SNP 174070 to 174670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,861 DEBUG Processing 143/724 atomic regions from SNP 42742 to 43343 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,005 DEBUG Processing 40/683 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,066 DEBUG Processing 582/730 atomic regions from SNP 174370 to 174970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,085 DEBUG Processing 144/724 atomic regions from SNP 43043 to 43644 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,229 DEBUG Processing 41/683 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,279 DEBUG Processing 583/730 atomic regions from SNP 174670 to 175270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,314 DEBUG Processing 145/724 atomic regions from SNP 43344 to 43945 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,446 DEBUG Processing 42/683 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,492 DEBUG Processing 584/730 atomic regions from SNP 174970 to 175570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,542 DEBUG Processing 146/724 atomic regions from SNP 43645 to 44246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,584 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:52:59,664 DEBUG Processing 43/683 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,707 DEBUG Processing 585/730 atomic regions from SNP 175270 to 175870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,772 DEBUG Processing 147/724 atomic regions from SNP 43946 to 44547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,890 DEBUG Processing 44/683 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,934 DEBUG Processing 586/730 atomic regions from SNP 175570 to 176170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,002 DEBUG Processing 148/724 atomic regions from SNP 44247 to 44848 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,116 DEBUG Processing 45/683 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,147 DEBUG Processing 587/730 atomic regions from SNP 175870 to 176470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,228 DEBUG Processing 149/724 atomic regions from SNP 44548 to 45149 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,342 DEBUG Processing 46/683 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,364 DEBUG Processing 588/730 atomic regions from SNP 176170 to 176770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,456 DEBUG Processing 150/724 atomic regions from SNP 44849 to 45450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,566 DEBUG Processing 47/683 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,599 DEBUG Processing 589/730 atomic regions from SNP 176470 to 177070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,679 DEBUG Processing 151/724 atomic regions from SNP 45150 to 45751 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,790 DEBUG Processing 48/683 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,819 DEBUG Processing 590/730 atomic regions from SNP 176770 to 177370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,897 DEBUG Processing 152/724 atomic regions from SNP 45451 to 46052 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,010 DEBUG Processing 49/683 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,035 DEBUG Processing 591/730 atomic regions from SNP 177070 to 177670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,112 DEBUG Processing 153/724 atomic regions from SNP 45752 to 46353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,236 DEBUG Processing 50/683 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,253 DEBUG Processing 592/730 atomic regions from SNP 177370 to 177970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,325 DEBUG Processing 154/724 atomic regions from SNP 46053 to 46654 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,467 DEBUG Processing 51/683 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,477 DEBUG Processing 593/730 atomic regions from SNP 177670 to 178270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,543 DEBUG Processing 155/724 atomic regions from SNP 46354 to 46955 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,694 DEBUG Processing 594/730 atomic regions from SNP 177970 to 178570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,700 DEBUG Processing 52/683 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,764 DEBUG Processing 156/724 atomic regions from SNP 46655 to 47256 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,797 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:53:01,908 DEBUG Processing 595/730 atomic regions from SNP 178270 to 178870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,932 DEBUG Processing 53/683 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,992 DEBUG Processing 157/724 atomic regions from SNP 46956 to 47557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,123 DEBUG Processing 596/730 atomic regions from SNP 178570 to 179170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,177 DEBUG Processing 54/683 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,226 DEBUG Processing 158/724 atomic regions from SNP 47257 to 47858 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,338 DEBUG Processing 597/730 atomic regions from SNP 178870 to 179470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,434 DEBUG Processing 55/683 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,453 DEBUG Processing 159/724 atomic regions from SNP 47558 to 48159 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,554 DEBUG Processing 598/730 atomic regions from SNP 179170 to 179770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,678 DEBUG Processing 56/683 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,684 DEBUG Processing 160/724 atomic regions from SNP 47859 to 48460 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,780 DEBUG Processing 599/730 atomic regions from SNP 179470 to 180070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,910 DEBUG Processing 57/683 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,912 DEBUG Processing 161/724 atomic regions from SNP 48160 to 48761 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,008 DEBUG Processing 600/730 atomic regions from SNP 179770 to 180370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,144 DEBUG Processing 162/724 atomic regions from SNP 48461 to 49062 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,145 DEBUG Processing 58/683 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,228 DEBUG Processing 601/730 atomic regions from SNP 180070 to 180670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,389 DEBUG Processing 163/724 atomic regions from SNP 48762 to 49363 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,397 DEBUG Processing 59/683 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,454 DEBUG Processing 602/730 atomic regions from SNP 180370 to 180970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,618 DEBUG Processing 164/724 atomic regions from SNP 49063 to 49664 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,645 DEBUG Processing 60/683 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,690 DEBUG Processing 603/730 atomic regions from SNP 180670 to 181270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,848 DEBUG Processing 165/724 atomic regions from SNP 49364 to 49965 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,891 DEBUG Processing 61/683 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,918 DEBUG Processing 604/730 atomic regions from SNP 180970 to 181570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,081 DEBUG Processing 166/724 atomic regions from SNP 49665 to 50266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,139 DEBUG Processing 605/730 atomic regions from SNP 181270 to 181870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,148 DEBUG Processing 62/683 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,316 DEBUG Processing 167/724 atomic regions from SNP 49966 to 50567 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,360 DEBUG Processing 606/730 atomic regions from SNP 181570 to 182170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,390 DEBUG Processing 63/683 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,551 DEBUG Processing 168/724 atomic regions from SNP 50267 to 50868 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,573 DEBUG Processing 607/730 atomic regions from SNP 181870 to 182470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,625 DEBUG Processing 64/683 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,794 DEBUG Processing 608/730 atomic regions from SNP 182170 to 182770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,802 DEBUG Processing 169/724 atomic regions from SNP 50568 to 51169 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,860 DEBUG Processing 65/683 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,020 DEBUG Processing 609/730 atomic regions from SNP 182470 to 183070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,052 DEBUG Processing 170/724 atomic regions from SNP 50869 to 51470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,089 DEBUG Processing 66/683 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,245 DEBUG Processing 610/730 atomic regions from SNP 182770 to 183370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,286 DEBUG Processing 171/724 atomic regions from SNP 51170 to 51771 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,323 DEBUG Processing 67/683 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,470 DEBUG Processing 611/730 atomic regions from SNP 183070 to 183670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,539 DEBUG Processing 172/724 atomic regions from SNP 51471 to 52072 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,553 DEBUG Processing 68/683 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,689 DEBUG Processing 612/730 atomic regions from SNP 183370 to 183970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,782 DEBUG Processing 69/683 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,787 DEBUG Processing 173/724 atomic regions from SNP 51772 to 52373 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,910 DEBUG Processing 613/730 atomic regions from SNP 183670 to 184270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,030 DEBUG Processing 174/724 atomic regions from SNP 52073 to 52674 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,031 DEBUG Processing 70/683 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,122 DEBUG Processing 614/730 atomic regions from SNP 183970 to 184570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,257 DEBUG Processing 71/683 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,261 DEBUG Processing 175/724 atomic regions from SNP 52374 to 52975 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,337 DEBUG Processing 615/730 atomic regions from SNP 184270 to 184870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,479 DEBUG Processing 176/724 atomic regions from SNP 52675 to 53276 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,481 DEBUG Processing 72/683 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,550 DEBUG Processing 616/730 atomic regions from SNP 184570 to 185170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,700 DEBUG Processing 177/724 atomic regions from SNP 52976 to 53577 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,709 DEBUG Processing 73/683 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,766 DEBUG Processing 617/730 atomic regions from SNP 184870 to 185470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,919 DEBUG Processing 178/724 atomic regions from SNP 53277 to 53878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,934 DEBUG Processing 74/683 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,980 DEBUG Processing 618/730 atomic regions from SNP 185170 to 185770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,143 DEBUG Processing 179/724 atomic regions from SNP 53578 to 54179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,165 DEBUG Processing 75/683 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,195 DEBUG Processing 619/730 atomic regions from SNP 185470 to 186070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,370 DEBUG Processing 180/724 atomic regions from SNP 53879 to 54480 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,400 DEBUG Processing 76/683 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,413 DEBUG Processing 620/730 atomic regions from SNP 185770 to 186370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,607 DEBUG Processing 181/724 atomic regions from SNP 54180 to 54781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,644 DEBUG Processing 77/683 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,654 DEBUG Processing 621/730 atomic regions from SNP 186070 to 186670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,832 DEBUG Processing 182/724 atomic regions from SNP 54481 to 55082 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,872 DEBUG Processing 78/683 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,896 DEBUG Processing 622/730 atomic regions from SNP 186370 to 186970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,056 DEBUG Processing 183/724 atomic regions from SNP 54782 to 55383 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,098 DEBUG Processing 79/683 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,145 DEBUG Processing 623/730 atomic regions from SNP 186670 to 187270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,276 DEBUG Processing 184/724 atomic regions from SNP 55083 to 55684 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,326 DEBUG Processing 80/683 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,373 DEBUG Processing 624/730 atomic regions from SNP 186970 to 187570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,490 DEBUG Processing 185/724 atomic regions from SNP 55384 to 55985 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,549 DEBUG Processing 81/683 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,595 DEBUG Processing 625/730 atomic regions from SNP 187270 to 187870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,703 DEBUG Processing 186/724 atomic regions from SNP 55685 to 56286 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,775 DEBUG Processing 82/683 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,807 DEBUG Processing 626/730 atomic regions from SNP 187570 to 188170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,918 DEBUG Processing 187/724 atomic regions from SNP 55986 to 56587 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,996 DEBUG Processing 83/683 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,012 DEBUG Processing 627/730 atomic regions from SNP 187870 to 188470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,132 DEBUG Processing 188/724 atomic regions from SNP 56287 to 56888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,224 DEBUG Processing 84/683 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,250 DEBUG Processing 628/730 atomic regions from SNP 188170 to 188770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,345 DEBUG Processing 189/724 atomic regions from SNP 56588 to 57189 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,456 DEBUG Processing 85/683 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,497 DEBUG Processing 629/730 atomic regions from SNP 188470 to 189070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,560 DEBUG Processing 190/724 atomic regions from SNP 56889 to 57490 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,681 DEBUG Processing 86/683 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,749 DEBUG Processing 630/730 atomic regions from SNP 188770 to 189370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,774 DEBUG Processing 191/724 atomic regions from SNP 57190 to 57791 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,905 DEBUG Processing 87/683 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,988 DEBUG Processing 631/730 atomic regions from SNP 189070 to 189670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,991 DEBUG Processing 192/724 atomic regions from SNP 57491 to 58092 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,127 DEBUG Processing 88/683 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,210 DEBUG Processing 193/724 atomic regions from SNP 57792 to 58393 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,229 DEBUG Processing 632/730 atomic regions from SNP 189370 to 189970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,350 DEBUG Processing 89/683 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,437 DEBUG Processing 194/724 atomic regions from SNP 58093 to 58694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,474 DEBUG Processing 633/730 atomic regions from SNP 189670 to 190270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,576 DEBUG Processing 90/683 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,663 DEBUG Processing 195/724 atomic regions from SNP 58394 to 58995 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,714 DEBUG Processing 634/730 atomic regions from SNP 189970 to 190570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,801 DEBUG Processing 91/683 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,887 DEBUG Processing 196/724 atomic regions from SNP 58695 to 59296 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,958 DEBUG Processing 635/730 atomic regions from SNP 190270 to 190870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,019 DEBUG Processing 92/683 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,107 DEBUG Processing 197/724 atomic regions from SNP 58996 to 59597 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,203 DEBUG Processing 636/730 atomic regions from SNP 190570 to 191170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,240 DEBUG Processing 93/683 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,332 DEBUG Processing 198/724 atomic regions from SNP 59297 to 59898 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,358 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:53:11,360 DEBUG chr15: Signal quantile: 0.994. signal threshold: 17. Best RMSEA: 0.015 2025-01-31 09:53:11,453 DEBUG Processing 637/730 atomic regions from SNP 190870 to 191470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,461 DEBUG Processing 94/683 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,493 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:53:11,494 DEBUG chr16: Signal quantile: 0.995. signal threshold: 12. Best RMSEA: 0.022 2025-01-31 09:53:11,559 DEBUG Processing 199/724 atomic regions from SNP 59598 to 60199 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,682 DEBUG Processing 95/683 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,711 DEBUG Processing 638/730 atomic regions from SNP 191170 to 191770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,787 DEBUG Processing 200/724 atomic regions from SNP 59899 to 60500 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,905 DEBUG Processing 96/683 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,967 DEBUG Processing 639/730 atomic regions from SNP 191470 to 192070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,014 DEBUG Processing 201/724 atomic regions from SNP 60200 to 60801 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,127 DEBUG Processing 97/683 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,188 DEBUG Processing 640/730 atomic regions from SNP 191770 to 192370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,235 DEBUG Processing 202/724 atomic regions from SNP 60501 to 61102 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,347 DEBUG Processing 98/683 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,410 DEBUG Processing 641/730 atomic regions from SNP 192070 to 192670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,458 DEBUG Processing 203/724 atomic regions from SNP 60802 to 61403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,580 DEBUG Processing 99/683 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,639 DEBUG Processing 642/730 atomic regions from SNP 192370 to 192970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,686 DEBUG Processing 204/724 atomic regions from SNP 61103 to 61704 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,806 DEBUG Processing 100/683 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,865 DEBUG Processing 643/730 atomic regions from SNP 192670 to 193270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,906 DEBUG Processing 205/724 atomic regions from SNP 61404 to 62005 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,020 DEBUG Processing 101/683 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,089 DEBUG Processing 644/730 atomic regions from SNP 192970 to 193570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,131 DEBUG Processing 206/724 atomic regions from SNP 61705 to 62306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,222 DEBUG chr16 total SNP count: 170012 2025-01-31 09:53:13,222 DEBUG chr16 length: 98207768 2025-01-31 09:53:13,222 DEBUG ----------------------------------------- 2025-01-31 09:53:13,222 INFO Processing SNPs in chr16 2025-01-31 09:53:13,245 DEBUG Processing 102/683 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,315 DEBUG Processing 645/730 atomic regions from SNP 193270 to 193870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,323 DEBUG chr15 total SNP count: 181218 2025-01-31 09:53:13,323 DEBUG chr15 length: 104043685 2025-01-31 09:53:13,323 DEBUG ----------------------------------------- 2025-01-31 09:53:13,323 INFO Processing SNPs in chr15 2025-01-31 09:53:13,365 DEBUG Processing 207/724 atomic regions from SNP 62006 to 62607 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,395 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 170012)] 2025-01-31 09:53:13,468 DEBUG Processing 103/683 atomic regions from SNP 30702 to 31303 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,508 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 181218)] 2025-01-31 09:53:13,515 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:13,551 DEBUG Processing 646/730 atomic regions from SNP 193570 to 194170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,591 DEBUG Processing 208/724 atomic regions from SNP 62307 to 62908 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,636 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:13,707 DEBUG Processing 104/683 atomic regions from SNP 31003 to 31604 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,785 DEBUG Processing 647/730 atomic regions from SNP 193870 to 194470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,820 DEBUG Processing 209/724 atomic regions from SNP 62608 to 63209 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,957 DEBUG Processing 105/683 atomic regions from SNP 31304 to 31905 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,025 DEBUG Processing 648/730 atomic regions from SNP 194170 to 194770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,050 DEBUG Processing 210/724 atomic regions from SNP 62909 to 63510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,193 DEBUG Processing 106/683 atomic regions from SNP 31605 to 32206 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,266 DEBUG Processing 649/730 atomic regions from SNP 194470 to 195070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,277 DEBUG Processing 211/724 atomic regions from SNP 63210 to 63811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,418 DEBUG Processing 107/683 atomic regions from SNP 31906 to 32507 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,500 DEBUG Processing 650/730 atomic regions from SNP 194770 to 195370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,507 DEBUG Processing 212/724 atomic regions from SNP 63511 to 64111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,671 DEBUG Processing 108/683 atomic regions from SNP 32207 to 32808 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,729 DEBUG Processing 651/730 atomic regions from SNP 195070 to 195670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,737 DEBUG Processing 213/724 atomic regions from SNP 63811 to 64411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,922 DEBUG Processing 109/683 atomic regions from SNP 32508 to 33109 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,952 DEBUG Processing 652/730 atomic regions from SNP 195370 to 195970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,967 DEBUG Processing 214/724 atomic regions from SNP 64111 to 64711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,155 DEBUG Processing 110/683 atomic regions from SNP 32809 to 33410 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,167 DEBUG Processing 653/730 atomic regions from SNP 195670 to 196270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,201 DEBUG Processing 215/724 atomic regions from SNP 64411 to 65011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,378 DEBUG Processing 111/683 atomic regions from SNP 33110 to 33711 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,384 DEBUG Processing 654/730 atomic regions from SNP 195970 to 196570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,432 DEBUG Processing 216/724 atomic regions from SNP 64711 to 65311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,599 DEBUG Processing 655/730 atomic regions from SNP 196270 to 196870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,603 DEBUG Processing 112/683 atomic regions from SNP 33411 to 34012 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,664 DEBUG Processing 217/724 atomic regions from SNP 65011 to 65611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,816 DEBUG Processing 656/730 atomic regions from SNP 196570 to 197170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,831 DEBUG Processing 113/683 atomic regions from SNP 33712 to 34313 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,894 DEBUG Processing 218/724 atomic regions from SNP 65311 to 65911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,038 DEBUG Processing 657/730 atomic regions from SNP 196870 to 197470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,059 DEBUG Processing 114/683 atomic regions from SNP 34013 to 34614 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,125 DEBUG Processing 219/724 atomic regions from SNP 65611 to 66211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,263 DEBUG Processing 658/730 atomic regions from SNP 197170 to 197770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,288 DEBUG Processing 115/683 atomic regions from SNP 34314 to 34915 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,353 DEBUG Processing 220/724 atomic regions from SNP 65911 to 66511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,487 DEBUG Processing 659/730 atomic regions from SNP 197470 to 198070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,545 DEBUG Processing 116/683 atomic regions from SNP 34615 to 35216 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,586 DEBUG Processing 221/724 atomic regions from SNP 66211 to 66811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,710 DEBUG Processing 660/730 atomic regions from SNP 197770 to 198370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,807 DEBUG Processing 117/683 atomic regions from SNP 34916 to 35517 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,818 DEBUG Processing 222/724 atomic regions from SNP 66511 to 67111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,926 DEBUG Processing 661/730 atomic regions from SNP 198070 to 198670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,042 DEBUG Processing 223/724 atomic regions from SNP 66811 to 67411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,069 DEBUG Processing 118/683 atomic regions from SNP 35217 to 35818 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,147 DEBUG Processing 662/730 atomic regions from SNP 198370 to 198970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,200 DEBUG Segmenting atomic regions: 2025-01-31 09:53:17,265 DEBUG Processing 224/724 atomic regions from SNP 67111 to 67711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,289 DEBUG Processing 1/668 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:17,310 DEBUG Processing 119/683 atomic regions from SNP 35518 to 36119 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,369 DEBUG Processing 663/730 atomic regions from SNP 198670 to 199270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,502 DEBUG Processing 225/724 atomic regions from SNP 67411 to 68011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,515 DEBUG Processing 2/668 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:17,559 DEBUG Processing 120/683 atomic regions from SNP 35819 to 36420 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,590 DEBUG Processing 664/730 atomic regions from SNP 198970 to 199570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,742 DEBUG Processing 226/724 atomic regions from SNP 67711 to 68311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,748 DEBUG Processing 3/668 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:17,810 DEBUG Processing 121/683 atomic regions from SNP 36120 to 36721 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,812 DEBUG Processing 665/730 atomic regions from SNP 199270 to 199870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,970 DEBUG Processing 4/668 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:17,972 DEBUG Processing 227/724 atomic regions from SNP 68011 to 68611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,032 DEBUG Processing 666/730 atomic regions from SNP 199570 to 200170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,048 DEBUG Processing 122/683 atomic regions from SNP 36421 to 37022 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,207 DEBUG Processing 228/724 atomic regions from SNP 68311 to 68911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,210 DEBUG Processing 5/668 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:18,264 DEBUG Processing 667/730 atomic regions from SNP 199870 to 200470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,314 DEBUG Processing 123/683 atomic regions from SNP 36722 to 37323 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,439 DEBUG Processing 229/724 atomic regions from SNP 68611 to 69211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,448 DEBUG Processing 6/668 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:18,493 DEBUG Processing 668/730 atomic regions from SNP 200170 to 200770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,561 DEBUG Processing 124/683 atomic regions from SNP 37023 to 37624 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,665 DEBUG Processing 230/724 atomic regions from SNP 68911 to 69511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,686 DEBUG Processing 7/668 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:18,723 DEBUG Processing 669/730 atomic regions from SNP 200470 to 201070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,801 DEBUG Processing 125/683 atomic regions from SNP 37324 to 37925 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,894 DEBUG Processing 231/724 atomic regions from SNP 69211 to 69811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,914 DEBUG Processing 8/668 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:18,941 DEBUG Processing 670/730 atomic regions from SNP 200770 to 201370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,038 DEBUG Processing 126/683 atomic regions from SNP 37625 to 38226 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,119 DEBUG Processing 232/724 atomic regions from SNP 69511 to 70111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,128 DEBUG Processing 9/668 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:19,171 DEBUG Processing 671/730 atomic regions from SNP 201070 to 201670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,255 DEBUG Processing 127/683 atomic regions from SNP 37926 to 38527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,340 DEBUG Processing 10/668 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:19,344 DEBUG Processing 233/724 atomic regions from SNP 69811 to 70411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,400 DEBUG Processing 672/730 atomic regions from SNP 201370 to 201970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,470 DEBUG Processing 128/683 atomic regions from SNP 38227 to 38828 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,568 DEBUG Processing 11/668 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:19,569 DEBUG Processing 234/724 atomic regions from SNP 70111 to 70711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,626 DEBUG Processing 673/730 atomic regions from SNP 201670 to 202270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,693 DEBUG Processing 129/683 atomic regions from SNP 38528 to 39129 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,793 DEBUG Processing 235/724 atomic regions from SNP 70411 to 71011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,805 DEBUG Processing 12/668 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:19,845 DEBUG Processing 674/730 atomic regions from SNP 201970 to 202570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,915 DEBUG Processing 130/683 atomic regions from SNP 38829 to 39430 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,012 DEBUG Processing 236/724 atomic regions from SNP 70711 to 71311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,017 DEBUG Processing 13/668 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:20,063 DEBUG Processing 675/730 atomic regions from SNP 202270 to 202870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,136 DEBUG Processing 131/683 atomic regions from SNP 39130 to 39731 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,230 DEBUG Processing 14/668 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:20,235 DEBUG Processing 237/724 atomic regions from SNP 71011 to 71611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,281 DEBUG Processing 676/730 atomic regions from SNP 202570 to 203170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,358 DEBUG Processing 132/683 atomic regions from SNP 39431 to 40032 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,446 DEBUG Processing 15/668 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:20,453 DEBUG Processing 238/724 atomic regions from SNP 71311 to 71911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,501 DEBUG Processing 677/730 atomic regions from SNP 202870 to 203470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,580 DEBUG Processing 133/683 atomic regions from SNP 39732 to 40333 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,660 DEBUG Processing 16/668 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:20,672 DEBUG Processing 239/724 atomic regions from SNP 71611 to 72211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,725 DEBUG Processing 678/730 atomic regions from SNP 203170 to 203770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,801 DEBUG Processing 134/683 atomic regions from SNP 40033 to 40634 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,871 DEBUG Processing 17/668 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:20,892 DEBUG Processing 240/724 atomic regions from SNP 71911 to 72511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,950 DEBUG Processing 679/730 atomic regions from SNP 203470 to 204070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,021 DEBUG Processing 135/683 atomic regions from SNP 40334 to 40935 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,077 DEBUG Processing 18/668 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:21,107 DEBUG Processing 241/724 atomic regions from SNP 72211 to 72811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,172 DEBUG Processing 680/730 atomic regions from SNP 203770 to 204370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,247 DEBUG Processing 136/683 atomic regions from SNP 40635 to 41236 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,285 DEBUG Processing 19/668 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:21,318 DEBUG Processing 242/724 atomic regions from SNP 72511 to 73111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,391 DEBUG Processing 681/730 atomic regions from SNP 204070 to 204670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,472 DEBUG Processing 137/683 atomic regions from SNP 40936 to 41537 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,492 DEBUG Processing 20/668 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:21,530 DEBUG Processing 243/724 atomic regions from SNP 72811 to 73411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,610 DEBUG Processing 682/730 atomic regions from SNP 204370 to 204970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,701 DEBUG Processing 138/683 atomic regions from SNP 41237 to 41838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,705 DEBUG Processing 21/668 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:21,744 DEBUG Processing 244/724 atomic regions from SNP 73111 to 73711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,824 DEBUG Processing 683/730 atomic regions from SNP 204670 to 205270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,920 DEBUG Processing 22/668 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:21,931 DEBUG Processing 139/683 atomic regions from SNP 41538 to 42139 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,959 DEBUG Processing 245/724 atomic regions from SNP 73411 to 74011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,043 DEBUG Processing 684/730 atomic regions from SNP 204970 to 205570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,133 DEBUG Processing 23/668 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:22,158 DEBUG Processing 140/683 atomic regions from SNP 41839 to 42440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,174 DEBUG Processing 246/724 atomic regions from SNP 73711 to 74311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,263 DEBUG Processing 685/730 atomic regions from SNP 205270 to 205870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,349 DEBUG Processing 24/668 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:22,390 DEBUG Processing 141/683 atomic regions from SNP 42140 to 42741 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,393 DEBUG Processing 247/724 atomic regions from SNP 74011 to 74611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,483 DEBUG Processing 686/730 atomic regions from SNP 205570 to 206170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,562 DEBUG Processing 25/668 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:22,611 DEBUG Processing 248/724 atomic regions from SNP 74311 to 74911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,615 DEBUG Processing 142/683 atomic regions from SNP 42441 to 43042 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,706 DEBUG Processing 687/730 atomic regions from SNP 205870 to 206470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,774 DEBUG Processing 26/668 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:22,834 DEBUG Processing 249/724 atomic regions from SNP 74611 to 75211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,843 DEBUG Processing 143/683 atomic regions from SNP 42742 to 43343 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,928 DEBUG Processing 688/730 atomic regions from SNP 206170 to 206770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,985 DEBUG Processing 27/668 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:23,058 DEBUG Processing 250/724 atomic regions from SNP 74911 to 75511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,070 DEBUG Processing 144/683 atomic regions from SNP 43043 to 43644 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,148 DEBUG Processing 689/730 atomic regions from SNP 206470 to 207070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,193 DEBUG Processing 28/668 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:23,278 DEBUG Processing 251/724 atomic regions from SNP 75211 to 75811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,292 DEBUG Processing 145/683 atomic regions from SNP 43344 to 43945 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,367 DEBUG Processing 690/730 atomic regions from SNP 206770 to 207370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,400 DEBUG Processing 29/668 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:23,497 DEBUG Processing 252/724 atomic regions from SNP 75511 to 76111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,514 DEBUG Processing 146/683 atomic regions from SNP 43645 to 44246 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,586 DEBUG Processing 691/730 atomic regions from SNP 207070 to 207670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,606 DEBUG Processing 30/668 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:23,705 DEBUG Processing 253/724 atomic regions from SNP 75811 to 76411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,733 DEBUG Processing 147/683 atomic regions from SNP 43946 to 44547 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,802 DEBUG Processing 692/730 atomic regions from SNP 207370 to 207970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,808 DEBUG Processing 31/668 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:23,915 DEBUG Processing 254/724 atomic regions from SNP 76111 to 76711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,949 DEBUG Processing 148/683 atomic regions from SNP 44247 to 44848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,011 DEBUG Processing 32/668 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:24,016 DEBUG Processing 693/730 atomic regions from SNP 207670 to 208270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,126 DEBUG Processing 255/724 atomic regions from SNP 76411 to 77011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,164 DEBUG Processing 149/683 atomic regions from SNP 44548 to 45149 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,226 DEBUG Processing 33/668 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:24,230 DEBUG Processing 694/730 atomic regions from SNP 207970 to 208570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,340 DEBUG Processing 256/724 atomic regions from SNP 76711 to 77311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,376 DEBUG Processing 150/683 atomic regions from SNP 44849 to 45450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,441 DEBUG Processing 34/668 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:24,444 DEBUG Processing 695/730 atomic regions from SNP 208270 to 208870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,548 DEBUG Processing 257/724 atomic regions from SNP 77011 to 77611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,591 DEBUG Processing 151/683 atomic regions from SNP 45150 to 45751 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,655 DEBUG Processing 35/668 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:24,665 DEBUG Processing 696/730 atomic regions from SNP 208570 to 209170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,757 DEBUG Processing 258/724 atomic regions from SNP 77311 to 77911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,805 DEBUG Processing 152/683 atomic regions from SNP 45451 to 46052 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,877 DEBUG Processing 36/668 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:24,884 DEBUG Processing 697/730 atomic regions from SNP 208870 to 209470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,968 DEBUG Processing 259/724 atomic regions from SNP 77611 to 78211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,019 DEBUG Processing 153/683 atomic regions from SNP 45752 to 46353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,087 DEBUG Processing 37/668 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,102 DEBUG Processing 698/730 atomic regions from SNP 209170 to 209770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,184 DEBUG Processing 260/724 atomic regions from SNP 77911 to 78511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,237 DEBUG Processing 154/683 atomic regions from SNP 46053 to 46653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,295 DEBUG Processing 38/668 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,320 DEBUG Processing 699/730 atomic regions from SNP 209470 to 210070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,395 DEBUG Processing 261/724 atomic regions from SNP 78211 to 78811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,472 DEBUG Processing 155/683 atomic regions from SNP 46353 to 46953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,501 DEBUG Processing 39/668 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,539 DEBUG Processing 700/730 atomic regions from SNP 209770 to 210370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,606 DEBUG Processing 262/724 atomic regions from SNP 78511 to 79111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,705 DEBUG Processing 156/683 atomic regions from SNP 46653 to 47253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,705 DEBUG Processing 40/668 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,771 DEBUG Processing 701/730 atomic regions from SNP 210070 to 210670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,813 DEBUG Processing 263/724 atomic regions from SNP 78811 to 79411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,912 DEBUG Processing 41/668 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,934 DEBUG Processing 157/683 atomic regions from SNP 46953 to 47553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,007 DEBUG Processing 702/730 atomic regions from SNP 210370 to 210970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,024 DEBUG Processing 264/724 atomic regions from SNP 79111 to 79711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,119 DEBUG Processing 42/668 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,154 DEBUG Processing 158/683 atomic regions from SNP 47253 to 47853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,230 DEBUG Processing 703/730 atomic regions from SNP 210670 to 211270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,238 DEBUG Processing 265/724 atomic regions from SNP 79411 to 80011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,326 DEBUG Processing 43/668 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,383 DEBUG Processing 159/683 atomic regions from SNP 47553 to 48153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,444 DEBUG Processing 704/730 atomic regions from SNP 210970 to 211570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,453 DEBUG Processing 266/724 atomic regions from SNP 79711 to 80311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,534 DEBUG Processing 44/668 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,608 DEBUG Processing 160/683 atomic regions from SNP 47853 to 48453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,665 DEBUG Processing 267/724 atomic regions from SNP 80011 to 80611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,675 DEBUG Processing 705/730 atomic regions from SNP 211270 to 211870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,740 DEBUG Processing 45/668 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,832 DEBUG Processing 161/683 atomic regions from SNP 48153 to 48753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,879 DEBUG Processing 268/724 atomic regions from SNP 80311 to 80911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,913 DEBUG Processing 706/730 atomic regions from SNP 211570 to 212170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,948 DEBUG Processing 46/668 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,062 DEBUG Processing 162/683 atomic regions from SNP 48453 to 49053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,093 DEBUG Processing 269/724 atomic regions from SNP 80611 to 81211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,147 DEBUG Processing 707/730 atomic regions from SNP 211870 to 212470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,161 DEBUG Processing 47/668 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,280 DEBUG Processing 163/683 atomic regions from SNP 48753 to 49353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,304 DEBUG Processing 270/724 atomic regions from SNP 80911 to 81511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,371 DEBUG Processing 48/668 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,384 DEBUG Processing 708/730 atomic regions from SNP 212170 to 212770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,495 DEBUG Processing 164/683 atomic regions from SNP 49053 to 49653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,526 DEBUG Processing 271/724 atomic regions from SNP 81211 to 81811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,583 DEBUG Processing 49/668 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,634 DEBUG Processing 709/730 atomic regions from SNP 212470 to 213070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,708 DEBUG Processing 165/683 atomic regions from SNP 49353 to 49953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,759 DEBUG Processing 272/724 atomic regions from SNP 81511 to 82111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,793 DEBUG Processing 50/668 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,869 DEBUG Processing 710/730 atomic regions from SNP 212770 to 213370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,937 DEBUG Processing 166/683 atomic regions from SNP 49653 to 50253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,973 DEBUG Processing 273/724 atomic regions from SNP 81811 to 82411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,004 DEBUG Processing 51/668 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,114 DEBUG Processing 711/730 atomic regions from SNP 213070 to 213670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,160 DEBUG Processing 167/683 atomic regions from SNP 49953 to 50553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,182 DEBUG Processing 274/724 atomic regions from SNP 82111 to 82711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,210 DEBUG Processing 52/668 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,364 DEBUG Processing 712/730 atomic regions from SNP 213370 to 213970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,384 DEBUG Processing 168/683 atomic regions from SNP 50253 to 50853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,401 DEBUG Processing 275/724 atomic regions from SNP 82411 to 83011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,427 DEBUG Processing 53/668 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,596 DEBUG Processing 169/683 atomic regions from SNP 50553 to 51153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,611 DEBUG Processing 713/730 atomic regions from SNP 213670 to 214270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,624 DEBUG Processing 276/724 atomic regions from SNP 82711 to 83311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,636 DEBUG Processing 54/668 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,812 DEBUG Processing 170/683 atomic regions from SNP 50853 to 51453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,844 DEBUG Processing 55/668 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,849 DEBUG Processing 277/724 atomic regions from SNP 83011 to 83611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,860 DEBUG Processing 714/730 atomic regions from SNP 213970 to 214570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,030 DEBUG Processing 171/683 atomic regions from SNP 51153 to 51753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,050 DEBUG Processing 56/668 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,064 DEBUG Processing 278/724 atomic regions from SNP 83311 to 83911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,098 DEBUG Processing 715/730 atomic regions from SNP 214270 to 214870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,240 DEBUG Processing 172/683 atomic regions from SNP 51453 to 52053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,258 DEBUG Processing 57/668 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,294 DEBUG Processing 279/724 atomic regions from SNP 83611 to 84211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,347 DEBUG Processing 716/730 atomic regions from SNP 214570 to 215170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,458 DEBUG Processing 173/683 atomic regions from SNP 51753 to 52353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,460 DEBUG Processing 58/668 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,523 DEBUG Processing 280/724 atomic regions from SNP 83911 to 84511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,593 DEBUG Processing 717/730 atomic regions from SNP 214870 to 215470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,661 DEBUG Processing 59/668 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,673 DEBUG Processing 174/683 atomic regions from SNP 52053 to 52653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,746 DEBUG Processing 281/724 atomic regions from SNP 84211 to 84811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,827 DEBUG Processing 718/730 atomic regions from SNP 215170 to 215770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,859 DEBUG Processing 60/668 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,881 DEBUG Processing 175/683 atomic regions from SNP 52353 to 52953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,961 DEBUG Processing 282/724 atomic regions from SNP 84511 to 85111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,059 DEBUG Processing 719/730 atomic regions from SNP 215470 to 216070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,059 DEBUG Processing 61/668 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,089 DEBUG Processing 176/683 atomic regions from SNP 52653 to 53253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,175 DEBUG Processing 283/724 atomic regions from SNP 84811 to 85411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,263 DEBUG Processing 62/668 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,296 DEBUG Processing 720/730 atomic regions from SNP 215770 to 216370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,303 DEBUG Processing 177/683 atomic regions from SNP 52953 to 53553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,393 DEBUG Processing 284/724 atomic regions from SNP 85111 to 85711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,468 DEBUG Processing 63/668 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,519 DEBUG Processing 721/730 atomic regions from SNP 216070 to 216670 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,522 DEBUG Processing 178/683 atomic regions from SNP 53253 to 53853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,611 DEBUG Processing 285/724 atomic regions from SNP 85411 to 86011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,671 DEBUG Processing 64/668 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,744 DEBUG Processing 722/730 atomic regions from SNP 216370 to 216970 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,760 DEBUG Processing 179/683 atomic regions from SNP 53553 to 54153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,826 DEBUG Processing 286/724 atomic regions from SNP 85711 to 86311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,873 DEBUG Processing 65/668 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,959 DEBUG Processing 723/730 atomic regions from SNP 216670 to 217270 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,997 DEBUG Processing 180/683 atomic regions from SNP 53853 to 54453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,045 DEBUG Processing 287/724 atomic regions from SNP 86011 to 86611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,081 DEBUG Processing 66/668 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,175 DEBUG Processing 724/730 atomic regions from SNP 216970 to 217570 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,231 DEBUG Processing 181/683 atomic regions from SNP 54153 to 54753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,289 DEBUG Processing 288/724 atomic regions from SNP 86311 to 86911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,291 DEBUG Processing 67/668 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,408 DEBUG Processing 725/730 atomic regions from SNP 217270 to 217870 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,459 DEBUG Processing 182/683 atomic regions from SNP 54453 to 55053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,508 DEBUG Processing 68/668 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,531 DEBUG Processing 289/724 atomic regions from SNP 86611 to 87211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,638 DEBUG Processing 726/730 atomic regions from SNP 217570 to 218170 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,692 DEBUG Processing 183/683 atomic regions from SNP 54753 to 55353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,728 DEBUG Processing 69/668 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,772 DEBUG Processing 290/724 atomic regions from SNP 86911 to 87511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,857 DEBUG Processing 727/730 atomic regions from SNP 217870 to 218470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,938 DEBUG Processing 184/683 atomic regions from SNP 55053 to 55653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,947 DEBUG Processing 70/668 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,996 DEBUG Processing 291/724 atomic regions from SNP 87211 to 87811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,080 DEBUG Processing 728/730 atomic regions from SNP 218170 to 218770 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,164 DEBUG Processing 71/668 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,165 DEBUG Processing 185/683 atomic regions from SNP 55353 to 55953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,230 DEBUG Processing 292/724 atomic regions from SNP 87511 to 88111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,304 DEBUG Processing 729/730 atomic regions from SNP 218470 to 219070 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,385 DEBUG Processing 72/668 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,392 DEBUG Processing 186/683 atomic regions from SNP 55653 to 56253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,467 DEBUG Processing 293/724 atomic regions from SNP 87811 to 88411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,521 DEBUG Processing 730/730 atomic regions from SNP 218770 to 219370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,606 DEBUG Processing 73/668 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,619 DEBUG Processing 187/683 atomic regions from SNP 55953 to 56553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,648 DEBUG Unique SNPs positions in subchromosome 1: 219371 2025-01-31 09:53:32,688 DEBUG Processing 294/724 atomic regions from SNP 88111 to 88711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,829 DEBUG Processing 74/668 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,852 DEBUG Processing 188/683 atomic regions from SNP 56253 to 56853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,912 DEBUG Processing 295/724 atomic regions from SNP 88411 to 89011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,045 DEBUG Processing 75/668 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,104 DEBUG Processing 189/683 atomic regions from SNP 56553 to 57153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,132 DEBUG Processing 296/724 atomic regions from SNP 88711 to 89311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,264 DEBUG Processing 76/668 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,349 DEBUG Processing 190/683 atomic regions from SNP 56853 to 57453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,358 DEBUG Processing 297/724 atomic regions from SNP 89011 to 89611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,481 DEBUG Processing 77/668 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,591 DEBUG Processing 191/683 atomic regions from SNP 57153 to 57753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,593 DEBUG Processing 298/724 atomic regions from SNP 89311 to 89911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,697 DEBUG Processing 78/668 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,822 DEBUG Processing 192/683 atomic regions from SNP 57453 to 58053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,827 DEBUG Processing 299/724 atomic regions from SNP 89611 to 90211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,906 DEBUG Processing 79/668 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,967 DEBUG Segmenting atomic regions: 2025-01-31 09:53:34,042 DEBUG Processing 193/683 atomic regions from SNP 57753 to 58353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,045 DEBUG Processing 1/565 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:34,065 DEBUG Processing 300/724 atomic regions from SNP 89911 to 90511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,111 DEBUG Processing 80/668 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,245 DEBUG Processing 2/565 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:34,265 DEBUG Processing 194/683 atomic regions from SNP 58053 to 58653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,302 DEBUG Processing 301/724 atomic regions from SNP 90211 to 90811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,331 DEBUG Processing 81/668 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,452 DEBUG Processing 3/565 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:34,485 DEBUG Processing 195/683 atomic regions from SNP 58353 to 58953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,535 DEBUG Processing 302/724 atomic regions from SNP 90511 to 91111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,560 DEBUG Processing 82/668 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,678 DEBUG Processing 4/565 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:34,706 DEBUG Processing 196/683 atomic regions from SNP 58653 to 59253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,758 DEBUG Processing 303/724 atomic regions from SNP 90811 to 91411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,782 DEBUG Processing 83/668 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,897 DEBUG Processing 5/565 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:34,929 DEBUG Processing 197/683 atomic regions from SNP 58953 to 59553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,979 DEBUG Processing 304/724 atomic regions from SNP 91111 to 91711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,984 DEBUG Segmenting atomic regions: 2025-01-31 09:53:35,004 DEBUG Processing 84/668 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,063 DEBUG Processing 1/603 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,103 DEBUG Processing 6/565 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:35,148 DEBUG Processing 198/683 atomic regions from SNP 59253 to 59853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,199 DEBUG Processing 305/724 atomic regions from SNP 91411 to 92011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,228 DEBUG Processing 85/668 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,276 DEBUG Processing 2/603 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,328 DEBUG Processing 7/565 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:35,381 DEBUG Processing 199/683 atomic regions from SNP 59553 to 60153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,424 DEBUG Processing 306/724 atomic regions from SNP 91711 to 92311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,452 DEBUG Processing 86/668 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,492 DEBUG Processing 3/603 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,569 DEBUG Processing 8/565 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:35,622 DEBUG Processing 200/683 atomic regions from SNP 59853 to 60453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,652 DEBUG Processing 307/724 atomic regions from SNP 92011 to 92611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,688 DEBUG Processing 87/668 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,700 DEBUG Processing 4/603 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,794 DEBUG Processing 9/565 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:35,865 DEBUG Processing 201/683 atomic regions from SNP 60153 to 60753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,880 DEBUG Processing 308/724 atomic regions from SNP 92311 to 92911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,903 DEBUG Processing 5/603 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,908 DEBUG Processing 88/668 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,022 DEBUG Processing 10/565 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:36,107 DEBUG Processing 6/603 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:36,122 DEBUG Processing 89/668 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,123 DEBUG Processing 202/683 atomic regions from SNP 60453 to 61053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,123 DEBUG Processing 309/724 atomic regions from SNP 92611 to 93211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,255 DEBUG Processing 11/565 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:36,324 DEBUG Processing 7/603 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:36,345 DEBUG Processing 90/668 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,356 DEBUG Processing 310/724 atomic regions from SNP 92911 to 93511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,381 DEBUG Processing 203/683 atomic regions from SNP 60753 to 61353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,488 DEBUG Processing 12/565 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:36,544 DEBUG Processing 8/603 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:36,574 DEBUG Processing 91/668 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,599 DEBUG Processing 311/724 atomic regions from SNP 93211 to 93811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,625 DEBUG Processing 204/683 atomic regions from SNP 61053 to 61653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,704 DEBUG Processing 13/565 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:36,768 DEBUG Processing 9/603 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:36,803 DEBUG Processing 92/668 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,848 DEBUG Processing 312/724 atomic regions from SNP 93511 to 94111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,864 DEBUG Processing 205/683 atomic regions from SNP 61353 to 61953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,909 DEBUG Processing 14/565 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:36,982 DEBUG Processing 10/603 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:37,024 DEBUG Processing 93/668 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,078 DEBUG Processing 313/724 atomic regions from SNP 93811 to 94411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,110 DEBUG Processing 15/565 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:37,122 DEBUG Processing 206/683 atomic regions from SNP 61653 to 62253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,200 DEBUG Processing 11/603 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:37,249 DEBUG Processing 94/668 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,307 DEBUG Processing 314/724 atomic regions from SNP 94111 to 94711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,312 DEBUG Processing 16/565 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:37,378 DEBUG Processing 207/683 atomic regions from SNP 61953 to 62553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,420 DEBUG Processing 12/603 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:37,476 DEBUG Processing 95/668 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,513 DEBUG Processing 17/565 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:37,535 DEBUG Processing 315/724 atomic regions from SNP 94411 to 95011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,607 DEBUG Processing 208/683 atomic regions from SNP 62253 to 62853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,642 DEBUG Processing 13/603 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:37,695 DEBUG Processing 96/668 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,704 DEBUG Subchromosome time: 206.81587832409423, subchromosome SNPs: 219371 2025-01-31 09:53:37,704 DEBUG Estimated BADs: [0.45, 1.34, 0.67, 4.03, 1.34, 0.67, 1.34, 0.34, 1.34, 2.69, 1.34, 2.69, 1.34, 0.67, 0.34, 1.34, 2.69, 1.34, 2.69] SNP counts: [17389, 3841, 8648, 2694, 6609, 15302, 7191, 3257, 6066, 5075, 20699, 17423, 23659, 19799, 5700, 22816, 8099, 17160, 7944] SNP IDs counts: [17389, 3841, 8648, 2694, 6609, 15302, 7191, 3257, 6066, 5075, 20699, 17423, 23659, 19799, 5700, 22816, 8099, 17160, 7944] Critical gap: 595811bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.29Mbp, 15.44Mbp, 20.53Mbp, 21.95Mbp, 25.62Mbp, 33.94Mbp, 37.99Mbp, 39.89Mbp, 43.13Mbp, 45.78Mbp, 56.92Mbp, 66.06Mbp, 78.89Mbp, 90.58Mbp, 93.93Mbp, 106.19Mbp, 110.68Mbp, 120.01Mbp, 124.60Mbp] 2025-01-31 09:53:37,704 DEBUG chr9 time: 206.81644498708192 s 2025-01-31 09:53:37,713 DEBUG Processing 18/565 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:37,755 DEBUG Processing 316/724 atomic regions from SNP 94711 to 95311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,825 DEBUG chr9: Fitting background model for 19 segments 2025-01-31 09:53:37,831 DEBUG Processing 209/683 atomic regions from SNP 62553 to 63153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,855 DEBUG Processing 14/603 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:37,911 DEBUG Processing 97/668 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,918 DEBUG Processing 19/565 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:37,976 DEBUG Processing 317/724 atomic regions from SNP 95011 to 95611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,054 DEBUG Processing 210/683 atomic regions from SNP 62853 to 63453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,064 DEBUG Processing 15/603 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:38,123 DEBUG Processing 20/565 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:38,131 DEBUG Processing 98/668 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,206 DEBUG Processing 318/724 atomic regions from SNP 95311 to 95911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,273 DEBUG Processing 16/603 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:38,282 DEBUG Processing 211/683 atomic regions from SNP 63153 to 63753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,327 DEBUG Processing 21/565 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:38,346 DEBUG Processing 99/668 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,434 DEBUG Processing 319/724 atomic regions from SNP 95611 to 96211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,490 DEBUG Processing 17/603 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:38,515 DEBUG Processing 212/683 atomic regions from SNP 63453 to 64053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,542 DEBUG Processing 22/565 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:38,559 DEBUG Processing 100/668 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,656 DEBUG Processing 320/724 atomic regions from SNP 95911 to 96511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,704 DEBUG Processing 18/603 atomic regions from SNP 5117 to 5717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:38,745 DEBUG Processing 213/683 atomic regions from SNP 63753 to 64353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,749 DEBUG Processing 23/565 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:38,775 DEBUG Processing 101/668 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,876 DEBUG Processing 321/724 atomic regions from SNP 96211 to 96811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,919 DEBUG Processing 19/603 atomic regions from SNP 5417 to 6017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:38,957 DEBUG Processing 24/565 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:38,983 DEBUG Processing 214/683 atomic regions from SNP 64053 to 64653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,002 DEBUG Processing 102/668 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,105 DEBUG Processing 322/724 atomic regions from SNP 96511 to 97111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,135 DEBUG Processing 20/603 atomic regions from SNP 5717 to 6317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:39,163 DEBUG Processing 25/565 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:39,226 DEBUG Processing 215/683 atomic regions from SNP 64353 to 64953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,252 DEBUG Processing 103/668 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,329 DEBUG Processing 323/724 atomic regions from SNP 96811 to 97411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,345 DEBUG Processing 21/603 atomic regions from SNP 6017 to 6617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:39,370 DEBUG Processing 26/565 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:39,456 DEBUG Processing 216/683 atomic regions from SNP 64653 to 65253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,496 DEBUG Processing 104/668 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,554 DEBUG Processing 324/724 atomic regions from SNP 97111 to 97711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,558 DEBUG Processing 22/603 atomic regions from SNP 6317 to 6917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:39,579 DEBUG Processing 27/565 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:39,688 DEBUG Processing 217/683 atomic regions from SNP 64953 to 65553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,734 DEBUG Processing 105/668 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,773 DEBUG Processing 23/603 atomic regions from SNP 6617 to 7217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:39,790 DEBUG Processing 28/565 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:39,806 DEBUG Processing 325/724 atomic regions from SNP 97411 to 98011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,923 DEBUG Processing 218/683 atomic regions from SNP 65253 to 65853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,977 DEBUG Processing 106/668 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,991 DEBUG Processing 24/603 atomic regions from SNP 6917 to 7517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:39,999 DEBUG Processing 29/565 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:40,057 DEBUG Processing 326/724 atomic regions from SNP 97711 to 98311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,150 DEBUG Processing 219/683 atomic regions from SNP 65553 to 66153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,205 DEBUG Processing 25/603 atomic regions from SNP 7217 to 7817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:40,209 DEBUG Processing 30/565 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:40,215 DEBUG Processing 107/668 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,296 DEBUG Processing 327/724 atomic regions from SNP 98011 to 98611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,387 DEBUG Processing 220/683 atomic regions from SNP 65853 to 66453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,413 DEBUG Processing 26/603 atomic regions from SNP 7517 to 8117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:40,416 DEBUG Processing 31/565 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:40,434 DEBUG Processing 108/668 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,528 DEBUG Processing 328/724 atomic regions from SNP 98311 to 98911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,623 DEBUG Processing 27/603 atomic regions from SNP 7817 to 8417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:40,632 DEBUG Processing 221/683 atomic regions from SNP 66153 to 66753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,645 DEBUG Processing 32/565 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:40,650 DEBUG Processing 109/668 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,768 DEBUG Processing 329/724 atomic regions from SNP 98611 to 99211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,835 DEBUG Processing 28/603 atomic regions from SNP 8117 to 8717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:40,870 DEBUG Processing 110/668 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,877 DEBUG Processing 222/683 atomic regions from SNP 66453 to 67053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,885 DEBUG Processing 33/565 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:41,006 DEBUG Processing 330/724 atomic regions from SNP 98911 to 99511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,048 DEBUG Processing 29/603 atomic regions from SNP 8417 to 9017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:41,088 DEBUG Processing 111/668 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,112 DEBUG Processing 34/565 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:41,119 DEBUG Processing 223/683 atomic regions from SNP 66753 to 67353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,230 DEBUG Processing 331/724 atomic regions from SNP 99211 to 99811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,277 DEBUG Processing 30/603 atomic regions from SNP 8717 to 9317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:41,310 DEBUG Processing 112/668 atomic regions from SNP 33411 to 34012 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,326 DEBUG Processing 35/565 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:41,348 DEBUG Processing 224/683 atomic regions from SNP 67053 to 67653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,447 DEBUG Processing 332/724 atomic regions from SNP 99511 to 100111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,492 DEBUG Processing 31/603 atomic regions from SNP 9017 to 9617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:41,531 DEBUG Processing 113/668 atomic regions from SNP 33712 to 34313 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,536 DEBUG Processing 36/565 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:41,582 DEBUG Processing 225/683 atomic regions from SNP 67353 to 67953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,688 DEBUG Processing 333/724 atomic regions from SNP 99811 to 100411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,701 DEBUG Processing 32/603 atomic regions from SNP 9317 to 9917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:41,742 DEBUG Processing 37/565 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:41,751 DEBUG Processing 114/668 atomic regions from SNP 34013 to 34614 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,810 DEBUG Processing 226/683 atomic regions from SNP 67653 to 68253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,923 DEBUG Processing 33/603 atomic regions from SNP 9617 to 10217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:41,943 DEBUG Processing 334/724 atomic regions from SNP 100111 to 100711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,952 DEBUG Processing 38/565 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:41,981 DEBUG Processing 115/668 atomic regions from SNP 34314 to 34915 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,046 DEBUG Processing 227/683 atomic regions from SNP 67953 to 68553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,143 DEBUG Processing 34/603 atomic regions from SNP 9917 to 10517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:42,164 DEBUG Processing 39/565 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:42,195 DEBUG Processing 335/724 atomic regions from SNP 100411 to 101011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,207 DEBUG Processing 116/668 atomic regions from SNP 34615 to 35216 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,279 DEBUG Processing 228/683 atomic regions from SNP 68253 to 68853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,366 DEBUG Processing 35/603 atomic regions from SNP 10217 to 10817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:42,373 DEBUG Processing 40/565 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:42,429 DEBUG Processing 117/668 atomic regions from SNP 34916 to 35517 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,442 DEBUG Processing 336/724 atomic regions from SNP 100711 to 101311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,509 DEBUG Processing 229/683 atomic regions from SNP 68553 to 69153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,575 DEBUG Processing 41/565 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:42,595 DEBUG Processing 36/603 atomic regions from SNP 10517 to 11117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:42,661 DEBUG Processing 118/668 atomic regions from SNP 35217 to 35818 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,693 DEBUG Processing 337/724 atomic regions from SNP 101011 to 101611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,789 DEBUG Processing 230/683 atomic regions from SNP 68853 to 69453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,846 DEBUG Processing 42/565 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:42,848 DEBUG Processing 37/603 atomic regions from SNP 10817 to 11417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:42,903 DEBUG Processing 119/668 atomic regions from SNP 35518 to 36119 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,954 DEBUG Processing 338/724 atomic regions from SNP 101311 to 101911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,019 DEBUG Processing 231/683 atomic regions from SNP 69153 to 69753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,062 DEBUG Processing 38/603 atomic regions from SNP 11117 to 11717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,063 DEBUG Processing 43/565 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:43,120 DEBUG Processing 120/668 atomic regions from SNP 35819 to 36420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,200 DEBUG Processing 339/724 atomic regions from SNP 101611 to 102211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,249 DEBUG Processing 232/683 atomic regions from SNP 69453 to 70053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,274 DEBUG Processing 39/603 atomic regions from SNP 11417 to 12017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,295 DEBUG Processing 44/565 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:43,339 DEBUG Processing 121/668 atomic regions from SNP 36120 to 36721 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,460 DEBUG Processing 340/724 atomic regions from SNP 101911 to 102511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,490 DEBUG Processing 233/683 atomic regions from SNP 69753 to 70353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,498 DEBUG Processing 40/603 atomic regions from SNP 11717 to 12317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,540 DEBUG Processing 45/565 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:43,569 DEBUG Processing 122/668 atomic regions from SNP 36421 to 37022 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,727 DEBUG Processing 41/603 atomic regions from SNP 12017 to 12617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,730 DEBUG Processing 341/724 atomic regions from SNP 102211 to 102811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,735 DEBUG Processing 234/683 atomic regions from SNP 70053 to 70653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,786 DEBUG Processing 46/565 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:43,802 DEBUG Processing 123/668 atomic regions from SNP 36722 to 37323 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,953 DEBUG Processing 42/603 atomic regions from SNP 12317 to 12917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,996 DEBUG Processing 342/724 atomic regions from SNP 102511 to 103111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,000 DEBUG Processing 235/683 atomic regions from SNP 70353 to 70953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,034 DEBUG Processing 47/565 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:44,038 DEBUG Processing 124/668 atomic regions from SNP 37023 to 37624 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,173 DEBUG Processing 43/603 atomic regions from SNP 12617 to 13217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:44,257 DEBUG Processing 236/683 atomic regions from SNP 70653 to 71253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,261 DEBUG Processing 343/724 atomic regions from SNP 102811 to 103411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,271 DEBUG Processing 125/668 atomic regions from SNP 37324 to 37925 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,279 DEBUG Processing 48/565 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:44,383 DEBUG Processing 44/603 atomic regions from SNP 12917 to 13517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:44,503 DEBUG Processing 126/668 atomic regions from SNP 37625 to 38226 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,510 DEBUG Processing 49/565 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:44,513 DEBUG Processing 344/724 atomic regions from SNP 103111 to 103711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,516 DEBUG Processing 237/683 atomic regions from SNP 70953 to 71553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,592 DEBUG Processing 45/603 atomic regions from SNP 13217 to 13817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:44,726 DEBUG Processing 127/668 atomic regions from SNP 37926 to 38527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,742 DEBUG Processing 50/565 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:44,760 DEBUG Processing 238/683 atomic regions from SNP 71253 to 71853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,763 DEBUG Processing 345/724 atomic regions from SNP 103411 to 104011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,806 DEBUG Processing 46/603 atomic regions from SNP 13517 to 14117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:44,963 DEBUG Processing 128/668 atomic regions from SNP 38227 to 38828 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,968 DEBUG Processing 51/565 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:44,999 DEBUG Processing 239/683 atomic regions from SNP 71553 to 72153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,013 DEBUG Processing 346/724 atomic regions from SNP 103711 to 104311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,017 DEBUG Processing 47/603 atomic regions from SNP 13817 to 14417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:45,225 DEBUG Processing 52/565 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:45,241 DEBUG Processing 129/668 atomic regions from SNP 38528 to 39129 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,259 DEBUG Processing 48/603 atomic regions from SNP 14117 to 14717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:45,266 DEBUG Processing 240/683 atomic regions from SNP 71853 to 72453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,323 DEBUG Processing 347/724 atomic regions from SNP 104011 to 104611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,444 DEBUG Processing 53/565 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:45,476 DEBUG Processing 49/603 atomic regions from SNP 14417 to 15017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:45,485 DEBUG Processing 130/668 atomic regions from SNP 38829 to 39430 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,506 DEBUG Processing 241/683 atomic regions from SNP 72153 to 72753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,565 DEBUG Processing 348/724 atomic regions from SNP 104311 to 104911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,658 DEBUG Processing 54/565 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:45,694 DEBUG Processing 50/603 atomic regions from SNP 14717 to 15317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:45,729 DEBUG Processing 131/668 atomic regions from SNP 39130 to 39731 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,757 DEBUG Processing 242/683 atomic regions from SNP 72453 to 73053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,820 DEBUG Processing 349/724 atomic regions from SNP 104611 to 105211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,875 DEBUG Processing 55/565 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:45,910 DEBUG Processing 51/603 atomic regions from SNP 15017 to 15617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:45,954 DEBUG Processing 132/668 atomic regions from SNP 39431 to 40032 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,005 DEBUG Processing 243/683 atomic regions from SNP 72753 to 73353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,066 DEBUG Processing 350/724 atomic regions from SNP 104911 to 105511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,092 DEBUG Processing 56/565 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:46,120 DEBUG Processing 52/603 atomic regions from SNP 15317 to 15917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:46,171 DEBUG Processing 133/668 atomic regions from SNP 39732 to 40333 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,256 DEBUG Processing 244/683 atomic regions from SNP 73053 to 73653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,298 DEBUG Processing 351/724 atomic regions from SNP 105211 to 105811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,311 DEBUG Processing 57/565 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:46,345 DEBUG Processing 53/603 atomic regions from SNP 15617 to 16217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:46,390 DEBUG Processing 134/668 atomic regions from SNP 40033 to 40634 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,512 DEBUG Processing 245/683 atomic regions from SNP 73353 to 73953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,531 DEBUG Processing 352/724 atomic regions from SNP 105511 to 106111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,541 DEBUG Processing 58/565 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:46,589 DEBUG Processing 54/603 atomic regions from SNP 15917 to 16517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:46,623 DEBUG Processing 135/668 atomic regions from SNP 40334 to 40935 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,754 DEBUG Processing 246/683 atomic regions from SNP 73653 to 74253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,755 DEBUG Processing 59/565 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:46,770 DEBUG Processing 353/724 atomic regions from SNP 105811 to 106411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,840 DEBUG Processing 55/603 atomic regions from SNP 16217 to 16817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:46,851 DEBUG Processing 136/668 atomic regions from SNP 40635 to 41236 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,967 DEBUG Processing 60/565 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:46,986 DEBUG Processing 247/683 atomic regions from SNP 73953 to 74553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,002 DEBUG Processing 354/724 atomic regions from SNP 106111 to 106711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,077 DEBUG Processing 56/603 atomic regions from SNP 16517 to 17117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:47,079 DEBUG Processing 137/668 atomic regions from SNP 40936 to 41537 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,195 DEBUG Processing 61/565 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:47,218 DEBUG Processing 248/683 atomic regions from SNP 74253 to 74853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,239 DEBUG Processing 355/724 atomic regions from SNP 106411 to 107011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,309 DEBUG Processing 57/603 atomic regions from SNP 16817 to 17417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:47,311 DEBUG Processing 138/668 atomic regions from SNP 41237 to 41838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,427 DEBUG Processing 62/565 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:47,461 DEBUG Processing 249/683 atomic regions from SNP 74553 to 75153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,492 DEBUG Processing 356/724 atomic regions from SNP 106711 to 107311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,538 DEBUG Processing 139/668 atomic regions from SNP 41538 to 42139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,538 DEBUG Processing 58/603 atomic regions from SNP 17117 to 17717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:47,663 DEBUG Processing 63/565 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:47,716 DEBUG Processing 250/683 atomic regions from SNP 74853 to 75453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,725 DEBUG Processing 357/724 atomic regions from SNP 107011 to 107611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,760 DEBUG Processing 59/603 atomic regions from SNP 17417 to 18017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:47,764 DEBUG Processing 140/668 atomic regions from SNP 41839 to 42440 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,890 DEBUG Processing 64/565 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:47,958 DEBUG Processing 358/724 atomic regions from SNP 107311 to 107911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,960 DEBUG Processing 251/683 atomic regions from SNP 75153 to 75753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,978 DEBUG Processing 60/603 atomic regions from SNP 17717 to 18317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:47,990 DEBUG Processing 141/668 atomic regions from SNP 42140 to 42741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,110 DEBUG Processing 65/565 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:48,190 DEBUG Processing 359/724 atomic regions from SNP 107611 to 108211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,200 DEBUG Processing 61/603 atomic regions from SNP 18017 to 18617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:48,218 DEBUG Processing 252/683 atomic regions from SNP 75453 to 76053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,224 DEBUG Processing 142/668 atomic regions from SNP 42441 to 43042 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,338 DEBUG Processing 66/565 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:48,417 DEBUG Processing 62/603 atomic regions from SNP 18317 to 18917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:48,425 DEBUG Processing 360/724 atomic regions from SNP 107911 to 108511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,451 DEBUG Processing 143/668 atomic regions from SNP 42742 to 43343 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,477 DEBUG Processing 253/683 atomic regions from SNP 75753 to 76353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,567 DEBUG Processing 67/565 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:48,634 DEBUG Processing 63/603 atomic regions from SNP 18617 to 19217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:48,657 DEBUG Processing 361/724 atomic regions from SNP 108211 to 108811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,676 DEBUG Processing 144/668 atomic regions from SNP 43043 to 43644 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,713 DEBUG Processing 254/683 atomic regions from SNP 76053 to 76653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,797 DEBUG Processing 68/565 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:48,849 DEBUG Processing 64/603 atomic regions from SNP 18917 to 19517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:48,886 DEBUG Processing 362/724 atomic regions from SNP 108511 to 109111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,906 DEBUG Processing 145/668 atomic regions from SNP 43344 to 43945 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,947 DEBUG Processing 255/683 atomic regions from SNP 76353 to 76953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,016 DEBUG Processing 69/565 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,065 DEBUG Processing 65/603 atomic regions from SNP 19217 to 19817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:49,114 DEBUG Processing 363/724 atomic regions from SNP 108811 to 109411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,132 DEBUG Processing 146/668 atomic regions from SNP 43645 to 44246 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,180 DEBUG Processing 256/683 atomic regions from SNP 76653 to 77253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,234 DEBUG Processing 70/565 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,284 DEBUG Processing 66/603 atomic regions from SNP 19517 to 20117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:49,342 DEBUG Processing 364/724 atomic regions from SNP 109111 to 109711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,355 DEBUG Processing 147/668 atomic regions from SNP 43946 to 44547 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,416 DEBUG Processing 257/683 atomic regions from SNP 76953 to 77553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,442 DEBUG Processing 71/565 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,492 DEBUG Processing 67/603 atomic regions from SNP 19817 to 20417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:49,559 DEBUG Processing 365/724 atomic regions from SNP 109411 to 110011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,576 DEBUG Processing 148/668 atomic regions from SNP 44247 to 44848 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,652 DEBUG Processing 72/565 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,652 DEBUG Processing 258/683 atomic regions from SNP 77253 to 77853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,708 DEBUG Processing 68/603 atomic regions from SNP 20117 to 20717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:49,783 DEBUG Processing 366/724 atomic regions from SNP 109711 to 110311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,817 DEBUG Processing 149/668 atomic regions from SNP 44548 to 45149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,865 DEBUG Processing 73/565 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,906 DEBUG Processing 259/683 atomic regions from SNP 77553 to 78153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,927 DEBUG Processing 69/603 atomic regions from SNP 20417 to 21017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,005 DEBUG Processing 367/724 atomic regions from SNP 110011 to 110611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,046 DEBUG Processing 150/668 atomic regions from SNP 44849 to 45449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,073 DEBUG Processing 74/565 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:50,141 DEBUG Processing 70/603 atomic regions from SNP 20717 to 21317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,157 DEBUG Processing 260/683 atomic regions from SNP 77853 to 78453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,226 DEBUG Processing 368/724 atomic regions from SNP 110311 to 110911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,264 DEBUG Processing 151/668 atomic regions from SNP 45149 to 45749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,284 DEBUG Processing 75/565 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:50,368 DEBUG Processing 71/603 atomic regions from SNP 21017 to 21617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,416 DEBUG Processing 261/683 atomic regions from SNP 78153 to 78753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,460 DEBUG Processing 369/724 atomic regions from SNP 110611 to 111211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,487 DEBUG Processing 152/668 atomic regions from SNP 45449 to 46049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,498 DEBUG Processing 76/565 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:50,579 DEBUG Processing 72/603 atomic regions from SNP 21317 to 21917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,644 DEBUG Processing 262/683 atomic regions from SNP 78453 to 79053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,686 DEBUG Processing 370/724 atomic regions from SNP 110911 to 111511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,703 DEBUG Processing 153/668 atomic regions from SNP 45749 to 46349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,705 DEBUG Processing 77/565 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:50,788 DEBUG Processing 73/603 atomic regions from SNP 21617 to 22217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,871 DEBUG Processing 263/683 atomic regions from SNP 78753 to 79353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,910 DEBUG Processing 371/724 atomic regions from SNP 111211 to 111811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,913 DEBUG Processing 78/565 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:50,930 DEBUG Processing 154/668 atomic regions from SNP 46049 to 46649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,992 DEBUG Processing 74/603 atomic regions from SNP 21917 to 22517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:51,094 DEBUG Processing 264/683 atomic regions from SNP 79053 to 79653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,124 DEBUG Processing 79/565 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:51,131 DEBUG Processing 372/724 atomic regions from SNP 111511 to 112111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,151 DEBUG Processing 155/668 atomic regions from SNP 46349 to 46949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,202 DEBUG Processing 75/603 atomic regions from SNP 22217 to 22817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:51,321 DEBUG Processing 265/683 atomic regions from SNP 79353 to 79953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,340 DEBUG Processing 80/565 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:51,356 DEBUG Processing 373/724 atomic regions from SNP 111811 to 112411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,385 DEBUG Processing 156/668 atomic regions from SNP 46649 to 47249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,411 DEBUG Processing 76/603 atomic regions from SNP 22517 to 23117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:51,549 DEBUG Processing 266/683 atomic regions from SNP 79653 to 80253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,555 DEBUG Processing 81/565 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:51,586 DEBUG Processing 374/724 atomic regions from SNP 112111 to 112711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,625 DEBUG Processing 77/603 atomic regions from SNP 22817 to 23417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:51,626 DEBUG Processing 157/668 atomic regions from SNP 46949 to 47549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,768 DEBUG Processing 82/565 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:51,774 DEBUG Processing 267/683 atomic regions from SNP 79953 to 80553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,812 DEBUG Processing 375/724 atomic regions from SNP 112411 to 113011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,840 DEBUG Processing 78/603 atomic regions from SNP 23117 to 23717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:51,846 DEBUG Processing 158/668 atomic regions from SNP 47249 to 47849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,996 DEBUG Processing 83/565 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,020 DEBUG Processing 268/683 atomic regions from SNP 80253 to 80853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,045 DEBUG Processing 376/724 atomic regions from SNP 112711 to 113311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,062 DEBUG Processing 79/603 atomic regions from SNP 23417 to 24017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,071 DEBUG Processing 159/668 atomic regions from SNP 47549 to 48149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,235 DEBUG Processing 84/565 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,277 DEBUG Processing 377/724 atomic regions from SNP 113011 to 113611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,281 DEBUG Processing 269/683 atomic regions from SNP 80553 to 81153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,286 DEBUG Processing 80/603 atomic regions from SNP 23717 to 24317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,298 DEBUG Processing 160/668 atomic regions from SNP 47849 to 48449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,468 DEBUG Processing 85/565 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,511 DEBUG Processing 378/724 atomic regions from SNP 113311 to 113911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,512 DEBUG Processing 81/603 atomic regions from SNP 24017 to 24617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,526 DEBUG Processing 161/668 atomic regions from SNP 48149 to 48749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,541 DEBUG Processing 270/683 atomic regions from SNP 80853 to 81453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,692 DEBUG Processing 86/565 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,728 DEBUG Processing 82/603 atomic regions from SNP 24317 to 24917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,736 DEBUG Processing 379/724 atomic regions from SNP 113611 to 114211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,746 DEBUG Processing 162/668 atomic regions from SNP 48449 to 49049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,796 DEBUG Processing 271/683 atomic regions from SNP 81153 to 81753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,923 DEBUG Processing 87/565 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,941 DEBUG Processing 83/603 atomic regions from SNP 24617 to 25217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,965 DEBUG Processing 380/724 atomic regions from SNP 113911 to 114511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,968 DEBUG Processing 163/668 atomic regions from SNP 48749 to 49349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,048 DEBUG Processing 272/683 atomic regions from SNP 81453 to 82053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,142 DEBUG Processing 88/565 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,150 DEBUG Processing 84/603 atomic regions from SNP 24917 to 25517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:53,185 DEBUG Processing 164/668 atomic regions from SNP 49049 to 49649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,187 DEBUG Processing 381/724 atomic regions from SNP 114211 to 114811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,307 DEBUG Processing 273/683 atomic regions from SNP 81753 to 82353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,368 DEBUG Processing 85/603 atomic regions from SNP 25217 to 25817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:53,379 DEBUG Processing 89/565 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,406 DEBUG Processing 165/668 atomic regions from SNP 49349 to 49949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,412 DEBUG Processing 382/724 atomic regions from SNP 114511 to 115111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,568 DEBUG Processing 274/683 atomic regions from SNP 82053 to 82653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,590 DEBUG Processing 86/603 atomic regions from SNP 25517 to 26117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:53,622 DEBUG Processing 90/565 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,626 DEBUG Processing 166/668 atomic regions from SNP 49649 to 50249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,637 DEBUG Processing 383/724 atomic regions from SNP 114811 to 115411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,807 DEBUG Processing 87/603 atomic regions from SNP 25817 to 26417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:53,811 DEBUG Processing 275/683 atomic regions from SNP 82353 to 82953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,845 DEBUG Processing 167/668 atomic regions from SNP 49949 to 50549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,862 DEBUG Processing 384/724 atomic regions from SNP 115111 to 115711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,865 DEBUG Processing 91/565 atomic regions from SNP 27090 to 27691 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,028 DEBUG Processing 88/603 atomic regions from SNP 26117 to 26717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,046 DEBUG Processing 276/683 atomic regions from SNP 82653 to 83253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,070 DEBUG Processing 168/668 atomic regions from SNP 50249 to 50849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,092 DEBUG Processing 92/565 atomic regions from SNP 27391 to 27992 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,095 DEBUG Processing 385/724 atomic regions from SNP 115411 to 116011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,242 DEBUG Processing 89/603 atomic regions from SNP 26417 to 27017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,284 DEBUG Processing 277/683 atomic regions from SNP 82953 to 83553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,297 DEBUG Processing 169/668 atomic regions from SNP 50549 to 51149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,323 DEBUG Processing 93/565 atomic regions from SNP 27692 to 28293 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,332 DEBUG Processing 386/724 atomic regions from SNP 115711 to 116311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,462 DEBUG Processing 90/603 atomic regions from SNP 26717 to 27317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,522 DEBUG Processing 278/683 atomic regions from SNP 83253 to 83853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,526 DEBUG Processing 170/668 atomic regions from SNP 50849 to 51449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,549 DEBUG Processing 94/565 atomic regions from SNP 27993 to 28594 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,572 DEBUG Processing 387/724 atomic regions from SNP 116011 to 116611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,677 DEBUG Processing 91/603 atomic regions from SNP 27017 to 27617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,751 DEBUG Processing 171/668 atomic regions from SNP 51149 to 51749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,755 DEBUG Processing 279/683 atomic regions from SNP 83553 to 84153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,766 DEBUG Processing 95/565 atomic regions from SNP 28294 to 28895 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,803 DEBUG Processing 388/724 atomic regions from SNP 116311 to 116911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,891 DEBUG Processing 92/603 atomic regions from SNP 27317 to 27917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,969 DEBUG Processing 96/565 atomic regions from SNP 28595 to 29196 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,975 DEBUG Processing 172/668 atomic regions from SNP 51449 to 52049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,988 DEBUG Processing 280/683 atomic regions from SNP 83853 to 84453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,037 DEBUG Processing 389/724 atomic regions from SNP 116611 to 117211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,114 DEBUG Processing 93/603 atomic regions from SNP 27617 to 28217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,174 DEBUG Processing 97/565 atomic regions from SNP 28896 to 29497 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,203 DEBUG Processing 173/668 atomic regions from SNP 51749 to 52349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,225 DEBUG Processing 281/683 atomic regions from SNP 84153 to 84753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,274 DEBUG Processing 390/724 atomic regions from SNP 116911 to 117511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,338 DEBUG Processing 94/603 atomic regions from SNP 27917 to 28517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,380 DEBUG Processing 98/565 atomic regions from SNP 29197 to 29798 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,432 DEBUG Processing 174/668 atomic regions from SNP 52049 to 52649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,485 DEBUG Processing 282/683 atomic regions from SNP 84453 to 85053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,521 DEBUG Processing 391/724 atomic regions from SNP 117211 to 117811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,564 DEBUG Processing 95/603 atomic regions from SNP 28217 to 28817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,582 DEBUG Processing 99/565 atomic regions from SNP 29498 to 30099 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,655 DEBUG Processing 175/668 atomic regions from SNP 52349 to 52949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,729 DEBUG Processing 283/683 atomic regions from SNP 84753 to 85353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,767 DEBUG Processing 392/724 atomic regions from SNP 117511 to 118111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,784 DEBUG Processing 100/565 atomic regions from SNP 29799 to 30400 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,793 DEBUG Processing 96/603 atomic regions from SNP 28517 to 29117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,879 DEBUG Processing 176/668 atomic regions from SNP 52649 to 53249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,969 DEBUG Processing 284/683 atomic regions from SNP 85053 to 85653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,994 DEBUG Processing 101/565 atomic regions from SNP 30100 to 30701 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,021 DEBUG Processing 97/603 atomic regions from SNP 28817 to 29417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,023 DEBUG Processing 393/724 atomic regions from SNP 117811 to 118411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,112 DEBUG Processing 177/668 atomic regions from SNP 52949 to 53549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,201 DEBUG Processing 102/565 atomic regions from SNP 30401 to 31002 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,222 DEBUG Processing 285/683 atomic regions from SNP 85353 to 85953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,249 DEBUG Processing 98/603 atomic regions from SNP 29117 to 29717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,270 DEBUG Processing 394/724 atomic regions from SNP 118111 to 118711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,336 DEBUG Processing 178/668 atomic regions from SNP 53249 to 53849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,417 DEBUG Processing 103/565 atomic regions from SNP 30702 to 31303 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,475 DEBUG Processing 99/603 atomic regions from SNP 29417 to 30017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,485 DEBUG Processing 286/683 atomic regions from SNP 85653 to 86253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,525 DEBUG Processing 395/724 atomic regions from SNP 118411 to 119011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,570 DEBUG Processing 179/668 atomic regions from SNP 53549 to 54149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,650 DEBUG Processing 104/565 atomic regions from SNP 31003 to 31604 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,696 DEBUG Processing 100/603 atomic regions from SNP 29717 to 30317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,732 DEBUG Processing 287/683 atomic regions from SNP 85953 to 86553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,798 DEBUG Processing 396/724 atomic regions from SNP 118711 to 119311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,806 DEBUG Processing 180/668 atomic regions from SNP 53849 to 54449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,891 DEBUG Processing 105/565 atomic regions from SNP 31304 to 31905 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,916 DEBUG Processing 101/603 atomic regions from SNP 30017 to 30617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,965 DEBUG Processing 288/683 atomic regions from SNP 86253 to 86853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,038 DEBUG Processing 181/668 atomic regions from SNP 54149 to 54749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,065 DEBUG Processing 397/724 atomic regions from SNP 119011 to 119611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,110 DEBUG Processing 106/565 atomic regions from SNP 31605 to 32206 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,131 DEBUG Processing 102/603 atomic regions from SNP 30317 to 30917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,197 DEBUG Processing 289/683 atomic regions from SNP 86553 to 87153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,268 DEBUG Processing 182/668 atomic regions from SNP 54449 to 55049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,312 DEBUG Processing 107/565 atomic regions from SNP 31906 to 32507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,332 DEBUG Processing 398/724 atomic regions from SNP 119311 to 119911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,351 DEBUG Processing 103/603 atomic regions from SNP 30617 to 31217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,426 DEBUG Processing 290/683 atomic regions from SNP 86853 to 87453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,492 DEBUG Processing 183/668 atomic regions from SNP 54749 to 55349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,524 DEBUG Processing 108/565 atomic regions from SNP 32207 to 32808 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,573 DEBUG Processing 104/603 atomic regions from SNP 30917 to 31517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,601 DEBUG Processing 399/724 atomic regions from SNP 119611 to 120211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,660 DEBUG Processing 291/683 atomic regions from SNP 87153 to 87753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,720 DEBUG Processing 184/668 atomic regions from SNP 55049 to 55649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,769 DEBUG Processing 109/565 atomic regions from SNP 32508 to 33109 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,789 DEBUG Processing 105/603 atomic regions from SNP 31217 to 31817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,866 DEBUG Processing 400/724 atomic regions from SNP 119911 to 120511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,889 DEBUG Processing 292/683 atomic regions from SNP 87453 to 88053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,949 DEBUG Processing 185/668 atomic regions from SNP 55349 to 55949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,990 DEBUG Processing 110/565 atomic regions from SNP 32809 to 33410 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,007 DEBUG Processing 106/603 atomic regions from SNP 31517 to 32117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,122 DEBUG Processing 293/683 atomic regions from SNP 87753 to 88353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,135 DEBUG Processing 401/724 atomic regions from SNP 120211 to 120811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,178 DEBUG Processing 186/668 atomic regions from SNP 55649 to 56249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,202 DEBUG Processing 111/565 atomic regions from SNP 33110 to 33711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,231 DEBUG Processing 107/603 atomic regions from SNP 31817 to 32417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,356 DEBUG Processing 294/683 atomic regions from SNP 88053 to 88653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,401 DEBUG Processing 402/724 atomic regions from SNP 120511 to 121111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,405 DEBUG Processing 187/668 atomic regions from SNP 55949 to 56549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,413 DEBUG Processing 112/565 atomic regions from SNP 33411 to 34012 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,458 DEBUG Processing 108/603 atomic regions from SNP 32117 to 32717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,583 DEBUG Processing 295/683 atomic regions from SNP 88353 to 88953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,627 DEBUG Processing 113/565 atomic regions from SNP 33712 to 34313 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,631 DEBUG Processing 188/668 atomic regions from SNP 56249 to 56849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,656 DEBUG Processing 403/724 atomic regions from SNP 120811 to 121411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,682 DEBUG Processing 109/603 atomic regions from SNP 32417 to 33017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,813 DEBUG Processing 296/683 atomic regions from SNP 88653 to 89253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,836 DEBUG Processing 114/565 atomic regions from SNP 34013 to 34614 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,857 DEBUG Processing 189/668 atomic regions from SNP 56549 to 57149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,905 DEBUG Processing 110/603 atomic regions from SNP 32717 to 33317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,908 DEBUG Processing 404/724 atomic regions from SNP 121111 to 121711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,035 DEBUG Processing 115/565 atomic regions from SNP 34314 to 34915 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,045 DEBUG Processing 297/683 atomic regions from SNP 88953 to 89553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,079 DEBUG Processing 190/668 atomic regions from SNP 56849 to 57449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,126 DEBUG Processing 111/603 atomic regions from SNP 33017 to 33617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,155 DEBUG Processing 405/724 atomic regions from SNP 121411 to 122011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,241 DEBUG Processing 116/565 atomic regions from SNP 34615 to 35216 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,280 DEBUG Processing 298/683 atomic regions from SNP 89253 to 89853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,306 DEBUG Processing 191/668 atomic regions from SNP 57149 to 57749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,348 DEBUG Processing 112/603 atomic regions from SNP 33317 to 33917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,418 DEBUG Processing 406/724 atomic regions from SNP 121711 to 122311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,441 DEBUG Processing 117/565 atomic regions from SNP 34916 to 35517 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,516 DEBUG Processing 299/683 atomic regions from SNP 89553 to 90153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,535 DEBUG Processing 192/668 atomic regions from SNP 57449 to 58049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,567 DEBUG Processing 113/603 atomic regions from SNP 33617 to 34217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,643 DEBUG Processing 118/565 atomic regions from SNP 35217 to 35818 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,676 DEBUG Processing 407/724 atomic regions from SNP 122011 to 122611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,752 DEBUG Processing 300/683 atomic regions from SNP 89853 to 90453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,770 DEBUG Processing 193/668 atomic regions from SNP 57749 to 58349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,797 DEBUG Processing 114/603 atomic regions from SNP 33917 to 34517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,852 DEBUG Processing 119/565 atomic regions from SNP 35518 to 36119 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,914 DEBUG Processing 408/724 atomic regions from SNP 122311 to 122911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,000 DEBUG Processing 301/683 atomic regions from SNP 90153 to 90753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,002 DEBUG Processing 194/668 atomic regions from SNP 58049 to 58649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,028 DEBUG Processing 115/603 atomic regions from SNP 34217 to 34817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,061 DEBUG Processing 120/565 atomic regions from SNP 35819 to 36420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,186 DEBUG Processing 409/724 atomic regions from SNP 122611 to 123211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,312 DEBUG Processing 195/668 atomic regions from SNP 58349 to 58949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,378 DEBUG Processing 302/683 atomic regions from SNP 90453 to 91053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,380 DEBUG Processing 121/565 atomic regions from SNP 36120 to 36721 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,403 DEBUG Processing 116/603 atomic regions from SNP 34517 to 35117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,511 DEBUG Processing 410/724 atomic regions from SNP 122911 to 123511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,562 DEBUG Processing 196/668 atomic regions from SNP 58649 to 59249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,592 DEBUG Processing 122/565 atomic regions from SNP 36421 to 37022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,633 DEBUG Processing 117/603 atomic regions from SNP 34817 to 35417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,656 DEBUG Processing 303/683 atomic regions from SNP 90753 to 91353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,751 DEBUG Processing 411/724 atomic regions from SNP 123211 to 123811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,788 DEBUG Processing 123/565 atomic regions from SNP 36722 to 37323 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,792 DEBUG Processing 197/668 atomic regions from SNP 58949 to 59549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,851 DEBUG Processing 118/603 atomic regions from SNP 35117 to 35717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,920 DEBUG Processing 304/683 atomic regions from SNP 91053 to 91653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,985 DEBUG Processing 124/565 atomic regions from SNP 37023 to 37624 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,991 DEBUG Processing 412/724 atomic regions from SNP 123511 to 124111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,038 DEBUG Processing 198/668 atomic regions from SNP 59249 to 59849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,076 DEBUG Processing 119/603 atomic regions from SNP 35417 to 36017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,188 DEBUG Processing 125/565 atomic regions from SNP 37324 to 37925 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,195 DEBUG Processing 305/683 atomic regions from SNP 91353 to 91953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,238 DEBUG Processing 413/724 atomic regions from SNP 123811 to 124411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,284 DEBUG Processing 199/668 atomic regions from SNP 59549 to 60149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,311 DEBUG Processing 120/603 atomic regions from SNP 35717 to 36317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,393 DEBUG Processing 126/565 atomic regions from SNP 37625 to 38226 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,480 DEBUG Processing 306/683 atomic regions from SNP 91653 to 92253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,506 DEBUG Processing 414/724 atomic regions from SNP 124111 to 124711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,551 DEBUG Processing 200/668 atomic regions from SNP 59849 to 60449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,564 DEBUG Processing 121/603 atomic regions from SNP 36017 to 36617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,609 DEBUG Processing 127/565 atomic regions from SNP 37926 to 38527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,755 DEBUG Processing 307/683 atomic regions from SNP 91953 to 92553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,784 DEBUG Processing 415/724 atomic regions from SNP 124411 to 125011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,800 DEBUG Processing 201/668 atomic regions from SNP 60149 to 60749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,804 DEBUG Processing 122/603 atomic regions from SNP 36317 to 36917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,811 DEBUG Processing 128/565 atomic regions from SNP 38227 to 38828 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,012 DEBUG Processing 129/565 atomic regions from SNP 38528 to 39129 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,035 DEBUG Processing 308/683 atomic regions from SNP 92253 to 92853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,047 DEBUG Processing 416/724 atomic regions from SNP 124711 to 125311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,050 DEBUG Processing 123/603 atomic regions from SNP 36617 to 37217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,056 DEBUG Processing 202/668 atomic regions from SNP 60449 to 61049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,204 DEBUG Processing 130/565 atomic regions from SNP 38829 to 39430 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,294 DEBUG Processing 124/603 atomic regions from SNP 36917 to 37517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,304 DEBUG Processing 203/668 atomic regions from SNP 60749 to 61349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,322 DEBUG Processing 309/683 atomic regions from SNP 92553 to 93153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,324 DEBUG Processing 417/724 atomic regions from SNP 125011 to 125611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,394 DEBUG Processing 131/565 atomic regions from SNP 39130 to 39731 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,521 DEBUG Processing 125/603 atomic regions from SNP 37217 to 37817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,537 DEBUG Processing 204/668 atomic regions from SNP 61049 to 61649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,576 DEBUG Processing 418/724 atomic regions from SNP 125311 to 125911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,585 DEBUG Processing 132/565 atomic regions from SNP 39431 to 40032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,598 DEBUG Processing 310/683 atomic regions from SNP 92853 to 93453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,743 DEBUG Processing 126/603 atomic regions from SNP 37517 to 38117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,767 DEBUG Processing 205/668 atomic regions from SNP 61349 to 61949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,777 DEBUG Processing 133/565 atomic regions from SNP 39732 to 40333 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,818 DEBUG Processing 419/724 atomic regions from SNP 125611 to 126211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,869 DEBUG Processing 311/683 atomic regions from SNP 93153 to 93753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,963 DEBUG Processing 127/603 atomic regions from SNP 37817 to 38417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,965 DEBUG Processing 134/565 atomic regions from SNP 40033 to 40634 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,990 DEBUG Processing 206/668 atomic regions from SNP 61649 to 62249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,056 DEBUG Processing 420/724 atomic regions from SNP 125911 to 126511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,117 DEBUG Processing 312/683 atomic regions from SNP 93453 to 94053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,157 DEBUG Processing 135/565 atomic regions from SNP 40334 to 40935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,179 DEBUG Processing 128/603 atomic regions from SNP 38117 to 38717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,211 DEBUG Processing 207/668 atomic regions from SNP 61949 to 62549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,316 DEBUG Processing 421/724 atomic regions from SNP 126211 to 126811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,347 DEBUG Processing 136/565 atomic regions from SNP 40635 to 41236 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,357 DEBUG Processing 313/683 atomic regions from SNP 93753 to 94353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,393 DEBUG Processing 129/603 atomic regions from SNP 38417 to 39017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,427 DEBUG Processing 208/668 atomic regions from SNP 62249 to 62849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,511 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:54:03,537 DEBUG Processing 137/565 atomic regions from SNP 40936 to 41537 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,563 DEBUG Processing 422/724 atomic regions from SNP 126511 to 127111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,593 DEBUG Processing 314/683 atomic regions from SNP 94053 to 94653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,614 DEBUG Processing 130/603 atomic regions from SNP 38717 to 39317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,651 DEBUG Processing 209/668 atomic regions from SNP 62549 to 63149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,735 DEBUG Processing 138/565 atomic regions from SNP 41237 to 41838 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,799 DEBUG Processing 423/724 atomic regions from SNP 126811 to 127411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,835 DEBUG Processing 315/683 atomic regions from SNP 94353 to 94953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,843 DEBUG Processing 131/603 atomic regions from SNP 39017 to 39617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,884 DEBUG Processing 210/668 atomic regions from SNP 62849 to 63449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,935 DEBUG Processing 139/565 atomic regions from SNP 41538 to 42139 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,047 DEBUG Processing 424/724 atomic regions from SNP 127111 to 127711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,072 DEBUG Processing 132/603 atomic regions from SNP 39317 to 39917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,081 DEBUG Processing 316/683 atomic regions from SNP 94653 to 95253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,120 DEBUG Processing 211/668 atomic regions from SNP 63149 to 63749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,136 DEBUG Processing 140/565 atomic regions from SNP 41839 to 42440 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,289 DEBUG Processing 425/724 atomic regions from SNP 127411 to 128011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,294 DEBUG Processing 133/603 atomic regions from SNP 39617 to 40217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,327 DEBUG Processing 317/683 atomic regions from SNP 94953 to 95553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,337 DEBUG Processing 141/565 atomic regions from SNP 42140 to 42741 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,349 DEBUG Processing 212/668 atomic regions from SNP 63449 to 64049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,523 DEBUG Processing 134/603 atomic regions from SNP 39917 to 40517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,536 DEBUG Processing 142/565 atomic regions from SNP 42441 to 43042 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,537 DEBUG Processing 426/724 atomic regions from SNP 127711 to 128311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,574 DEBUG Processing 318/683 atomic regions from SNP 95253 to 95853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,584 DEBUG Processing 213/668 atomic regions from SNP 63749 to 64349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,742 DEBUG Processing 143/565 atomic regions from SNP 42742 to 43343 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,751 DEBUG Processing 135/603 atomic regions from SNP 40217 to 40817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,784 DEBUG Processing 427/724 atomic regions from SNP 128011 to 128611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,821 DEBUG Processing 319/683 atomic regions from SNP 95553 to 96153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,821 DEBUG Processing 214/668 atomic regions from SNP 64049 to 64649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,944 DEBUG Processing 144/565 atomic regions from SNP 43043 to 43644 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,978 DEBUG Processing 136/603 atomic regions from SNP 40517 to 41117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,026 DEBUG Processing 428/724 atomic regions from SNP 128311 to 128911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,057 DEBUG Processing 215/668 atomic regions from SNP 64349 to 64949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,066 DEBUG Processing 320/683 atomic regions from SNP 95853 to 96453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,138 DEBUG Processing 145/565 atomic regions from SNP 43344 to 43945 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,203 DEBUG Processing 137/603 atomic regions from SNP 40817 to 41417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,276 DEBUG Processing 429/724 atomic regions from SNP 128611 to 129211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,298 DEBUG Processing 216/668 atomic regions from SNP 64649 to 65249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,311 DEBUG Processing 321/683 atomic regions from SNP 96153 to 96753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,334 DEBUG Processing 146/565 atomic regions from SNP 43645 to 44246 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,422 DEBUG Processing 138/603 atomic regions from SNP 41117 to 41717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,516 DEBUG Processing 430/724 atomic regions from SNP 128911 to 129511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,529 DEBUG Processing 217/668 atomic regions from SNP 64949 to 65549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,530 DEBUG Processing 147/565 atomic regions from SNP 43946 to 44547 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,551 DEBUG Processing 322/683 atomic regions from SNP 96453 to 97053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,640 DEBUG Processing 139/603 atomic regions from SNP 41417 to 42017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,744 DEBUG Processing 148/565 atomic regions from SNP 44247 to 44848 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,796 DEBUG Processing 218/668 atomic regions from SNP 65249 to 65849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,813 DEBUG Processing 431/724 atomic regions from SNP 129211 to 129811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,822 DEBUG Processing 323/683 atomic regions from SNP 96753 to 97353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,971 DEBUG Processing 140/603 atomic regions from SNP 41717 to 42317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,049 DEBUG Processing 149/565 atomic regions from SNP 44548 to 45149 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,158 DEBUG Processing 219/668 atomic regions from SNP 65549 to 66149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,166 DEBUG Processing 324/683 atomic regions from SNP 97053 to 97653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,178 DEBUG Processing 432/724 atomic regions from SNP 129511 to 130111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,268 DEBUG Processing 150/565 atomic regions from SNP 44849 to 45450 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,279 DEBUG Processing 141/603 atomic regions from SNP 42017 to 42617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,396 DEBUG Processing 220/668 atomic regions from SNP 65849 to 66449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,412 DEBUG Processing 325/683 atomic regions from SNP 97353 to 97953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,431 DEBUG Processing 433/724 atomic regions from SNP 129811 to 130411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,463 DEBUG Processing 151/565 atomic regions from SNP 45150 to 45751 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,498 DEBUG Processing 142/603 atomic regions from SNP 42317 to 42917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,634 DEBUG Processing 221/668 atomic regions from SNP 66149 to 66749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,665 DEBUG Processing 152/565 atomic regions from SNP 45451 to 46052 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,675 DEBUG Processing 326/683 atomic regions from SNP 97653 to 98253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,698 DEBUG Processing 434/724 atomic regions from SNP 130111 to 130711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,731 DEBUG Processing 143/603 atomic regions from SNP 42617 to 43217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,866 DEBUG Processing 153/565 atomic regions from SNP 45752 to 46353 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,870 DEBUG Processing 222/668 atomic regions from SNP 66449 to 67049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,946 DEBUG Processing 327/683 atomic regions from SNP 97953 to 98553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,964 DEBUG Processing 435/724 atomic regions from SNP 130411 to 131011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,980 DEBUG Processing 144/603 atomic regions from SNP 42917 to 43517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,053 DEBUG Processing 154/565 atomic regions from SNP 46053 to 46654 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,093 DEBUG Processing 223/668 atomic regions from SNP 66749 to 67349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,211 DEBUG Processing 145/603 atomic regions from SNP 43217 to 43817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,211 DEBUG Processing 328/683 atomic regions from SNP 98253 to 98853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,234 DEBUG Processing 436/724 atomic regions from SNP 130711 to 131311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,249 DEBUG Processing 155/565 atomic regions from SNP 46354 to 46955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,324 DEBUG Processing 224/668 atomic regions from SNP 67049 to 67649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,442 DEBUG Processing 146/603 atomic regions from SNP 43517 to 44117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,456 DEBUG Processing 156/565 atomic regions from SNP 46655 to 47256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,494 DEBUG Processing 329/683 atomic regions from SNP 98553 to 99153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,508 DEBUG Processing 437/724 atomic regions from SNP 131011 to 131611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,582 DEBUG Processing 225/668 atomic regions from SNP 67349 to 67949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,654 DEBUG Processing 157/565 atomic regions from SNP 46956 to 47557 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,667 DEBUG Processing 147/603 atomic regions from SNP 43817 to 44417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,760 DEBUG Processing 330/683 atomic regions from SNP 98853 to 99453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,778 DEBUG Processing 438/724 atomic regions from SNP 131311 to 131911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,817 DEBUG Processing 226/668 atomic regions from SNP 67649 to 68249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,869 DEBUG Processing 158/565 atomic regions from SNP 47257 to 47858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,898 DEBUG Processing 148/603 atomic regions from SNP 44117 to 44717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,028 DEBUG Processing 331/683 atomic regions from SNP 99153 to 99753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,042 DEBUG Processing 439/724 atomic regions from SNP 131611 to 132211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,058 DEBUG Processing 227/668 atomic regions from SNP 67949 to 68549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,074 DEBUG Processing 159/565 atomic regions from SNP 47558 to 48159 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,128 DEBUG Processing 149/603 atomic regions from SNP 44417 to 45017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,268 DEBUG Processing 160/565 atomic regions from SNP 47859 to 48460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,284 DEBUG Processing 440/724 atomic regions from SNP 131911 to 132511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,285 DEBUG Processing 332/683 atomic regions from SNP 99453 to 100053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,293 DEBUG Processing 228/668 atomic regions from SNP 68249 to 68849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,355 DEBUG Processing 150/603 atomic regions from SNP 44717 to 45317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,456 DEBUG Processing 161/565 atomic regions from SNP 48160 to 48761 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,524 DEBUG Processing 229/668 atomic regions from SNP 68549 to 69149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,530 DEBUG Processing 333/683 atomic regions from SNP 99753 to 100353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,534 DEBUG Processing 441/724 atomic regions from SNP 132211 to 132811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,581 DEBUG Processing 151/603 atomic regions from SNP 45017 to 45617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,644 DEBUG Processing 162/565 atomic regions from SNP 48461 to 49062 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,758 DEBUG Processing 230/668 atomic regions from SNP 68849 to 69449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,777 DEBUG Processing 334/683 atomic regions from SNP 100053 to 100653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,790 DEBUG Processing 442/724 atomic regions from SNP 132511 to 133111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,810 DEBUG Processing 152/603 atomic regions from SNP 45317 to 45917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,837 DEBUG Processing 163/565 atomic regions from SNP 48762 to 49363 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,988 DEBUG Processing 231/668 atomic regions from SNP 69149 to 69749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,027 DEBUG Processing 164/565 atomic regions from SNP 49063 to 49664 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,034 DEBUG Processing 443/724 atomic regions from SNP 132811 to 133411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,041 DEBUG Processing 335/683 atomic regions from SNP 100353 to 100953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,045 DEBUG Processing 153/603 atomic regions from SNP 45617 to 46217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,227 DEBUG Processing 232/668 atomic regions from SNP 69449 to 70049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,232 DEBUG Processing 165/565 atomic regions from SNP 49364 to 49965 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,283 DEBUG Processing 444/724 atomic regions from SNP 133111 to 133711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,284 DEBUG Processing 154/603 atomic regions from SNP 45917 to 46517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,319 DEBUG Processing 336/683 atomic regions from SNP 100653 to 101253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,435 DEBUG Processing 166/565 atomic regions from SNP 49665 to 50266 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,465 DEBUG Processing 233/668 atomic regions from SNP 69749 to 70349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,521 DEBUG Processing 155/603 atomic regions from SNP 46217 to 46817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,530 DEBUG Processing 445/724 atomic regions from SNP 133411 to 134011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,604 DEBUG Processing 337/683 atomic regions from SNP 100953 to 101553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,628 DEBUG Processing 167/565 atomic regions from SNP 49966 to 50567 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,701 DEBUG Processing 234/668 atomic regions from SNP 70049 to 70649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,749 DEBUG Processing 156/603 atomic regions from SNP 46517 to 47117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,768 DEBUG Processing 446/724 atomic regions from SNP 133711 to 134311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,825 DEBUG Processing 168/565 atomic regions from SNP 50267 to 50868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,867 DEBUG Processing 338/683 atomic regions from SNP 101253 to 101853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,932 DEBUG Processing 235/668 atomic regions from SNP 70349 to 70949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,975 DEBUG Processing 157/603 atomic regions from SNP 46817 to 47417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,010 DEBUG Processing 447/724 atomic regions from SNP 134011 to 134611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,022 DEBUG Processing 169/565 atomic regions from SNP 50568 to 51169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,115 DEBUG Processing 339/683 atomic regions from SNP 101553 to 102153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,171 DEBUG Processing 236/668 atomic regions from SNP 70649 to 71249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,206 DEBUG Processing 158/603 atomic regions from SNP 47117 to 47717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,223 DEBUG Processing 170/565 atomic regions from SNP 50869 to 51470 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,274 DEBUG Processing 448/724 atomic regions from SNP 134311 to 134911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,374 DEBUG Processing 340/683 atomic regions from SNP 101853 to 102453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,414 DEBUG Processing 237/668 atomic regions from SNP 70949 to 71549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,432 DEBUG Processing 171/565 atomic regions from SNP 51170 to 51771 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,437 DEBUG Processing 159/603 atomic regions from SNP 47417 to 48017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,520 DEBUG Processing 449/724 atomic regions from SNP 134611 to 135211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,626 DEBUG Processing 341/683 atomic regions from SNP 102153 to 102753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,633 DEBUG Processing 172/565 atomic regions from SNP 51471 to 52072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,650 DEBUG Processing 238/668 atomic regions from SNP 71249 to 71849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,662 DEBUG Processing 160/603 atomic regions from SNP 47717 to 48317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,784 DEBUG Processing 450/724 atomic regions from SNP 134911 to 135511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,829 DEBUG Processing 173/565 atomic regions from SNP 51772 to 52373 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,880 DEBUG Processing 342/683 atomic regions from SNP 102453 to 103053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,896 DEBUG Processing 239/668 atomic regions from SNP 71549 to 72149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,898 DEBUG Processing 161/603 atomic regions from SNP 48017 to 48617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,034 DEBUG Processing 174/565 atomic regions from SNP 52073 to 52674 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,042 DEBUG Processing 451/724 atomic regions from SNP 135211 to 135811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,128 DEBUG Processing 343/683 atomic regions from SNP 102753 to 103353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,129 DEBUG Processing 162/603 atomic regions from SNP 48317 to 48917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,138 DEBUG Processing 240/668 atomic regions from SNP 71849 to 72449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,236 DEBUG Processing 175/565 atomic regions from SNP 52374 to 52975 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,301 DEBUG Processing 452/724 atomic regions from SNP 135511 to 136111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,360 DEBUG Processing 163/603 atomic regions from SNP 48617 to 49217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,379 DEBUG Processing 344/683 atomic regions from SNP 103053 to 103653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,382 DEBUG Processing 241/668 atomic regions from SNP 72149 to 72749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,428 DEBUG Processing 176/565 atomic regions from SNP 52675 to 53276 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,566 DEBUG Processing 453/724 atomic regions from SNP 135811 to 136411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,593 DEBUG Processing 164/603 atomic regions from SNP 48917 to 49517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,626 DEBUG Processing 242/668 atomic regions from SNP 72449 to 73049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,639 DEBUG Processing 177/565 atomic regions from SNP 52976 to 53577 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,640 DEBUG Processing 345/683 atomic regions from SNP 103353 to 103953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,824 DEBUG Processing 165/603 atomic regions from SNP 49217 to 49817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,836 DEBUG Processing 454/724 atomic regions from SNP 136111 to 136711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,860 DEBUG Processing 178/565 atomic regions from SNP 53277 to 53878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,868 DEBUG Processing 243/668 atomic regions from SNP 72749 to 73349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,894 DEBUG Processing 346/683 atomic regions from SNP 103653 to 104253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,050 DEBUG Processing 166/603 atomic regions from SNP 49517 to 50117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,073 DEBUG Processing 179/565 atomic regions from SNP 53578 to 54179 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,090 DEBUG Processing 455/724 atomic regions from SNP 136411 to 137011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,100 DEBUG Processing 244/668 atomic regions from SNP 73049 to 73649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,147 DEBUG Processing 347/683 atomic regions from SNP 103953 to 104553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,272 DEBUG Processing 180/565 atomic regions from SNP 53879 to 54480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,293 DEBUG Processing 167/603 atomic regions from SNP 49817 to 50417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,339 DEBUG Processing 245/668 atomic regions from SNP 73349 to 73949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,345 DEBUG Processing 456/724 atomic regions from SNP 136711 to 137311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,404 DEBUG Processing 348/683 atomic regions from SNP 104253 to 104853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,483 DEBUG Processing 181/565 atomic regions from SNP 54180 to 54781 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,548 DEBUG Processing 168/603 atomic regions from SNP 50117 to 50717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,592 DEBUG Processing 246/668 atomic regions from SNP 73649 to 74249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,616 DEBUG Processing 457/724 atomic regions from SNP 137011 to 137611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,658 DEBUG Processing 349/683 atomic regions from SNP 104553 to 105153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,696 DEBUG Processing 182/565 atomic regions from SNP 54481 to 55082 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,784 DEBUG Processing 169/603 atomic regions from SNP 50417 to 51017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,833 DEBUG Processing 247/668 atomic regions from SNP 73949 to 74549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,876 DEBUG Processing 458/724 atomic regions from SNP 137311 to 137911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,896 DEBUG Processing 350/683 atomic regions from SNP 104853 to 105453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,897 DEBUG Processing 183/565 atomic regions from SNP 54782 to 55383 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,012 DEBUG Processing 170/603 atomic regions from SNP 50717 to 51317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,072 DEBUG Processing 248/668 atomic regions from SNP 74249 to 74849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,102 DEBUG Processing 184/565 atomic regions from SNP 55083 to 55684 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,127 DEBUG Processing 459/724 atomic regions from SNP 137611 to 138211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,142 DEBUG Processing 351/683 atomic regions from SNP 105153 to 105753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,244 DEBUG Processing 171/603 atomic regions from SNP 51017 to 51617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,303 DEBUG Processing 185/565 atomic regions from SNP 55384 to 55985 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,315 DEBUG Processing 249/668 atomic regions from SNP 74549 to 75149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,369 DEBUG Processing 460/724 atomic regions from SNP 137911 to 138511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,385 DEBUG Processing 352/683 atomic regions from SNP 105453 to 106053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,462 DEBUG Processing 172/603 atomic regions from SNP 51317 to 51917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,499 DEBUG Processing 186/565 atomic regions from SNP 55685 to 56286 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,543 DEBUG Processing 250/668 atomic regions from SNP 74849 to 75449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,607 DEBUG Processing 461/724 atomic regions from SNP 138211 to 138811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,630 DEBUG Processing 353/683 atomic regions from SNP 105753 to 106353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,670 DEBUG Processing 173/603 atomic regions from SNP 51617 to 52217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,710 DEBUG Processing 187/565 atomic regions from SNP 55986 to 56587 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,766 DEBUG Processing 251/668 atomic regions from SNP 75149 to 75749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,780 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:54:13,781 DEBUG chr17: Signal quantile: 0.992. signal threshold: 13. Best RMSEA: 0.019 2025-01-31 09:54:13,863 DEBUG Processing 462/724 atomic regions from SNP 138511 to 139111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,881 DEBUG Processing 174/603 atomic regions from SNP 51917 to 52517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,883 DEBUG Processing 354/683 atomic regions from SNP 106053 to 106653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,910 DEBUG Processing 188/565 atomic regions from SNP 56287 to 56888 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,987 DEBUG Processing 252/668 atomic regions from SNP 75449 to 76049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,098 DEBUG Processing 175/603 atomic regions from SNP 52217 to 52817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,105 DEBUG Processing 189/565 atomic regions from SNP 56588 to 57189 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,105 DEBUG Processing 463/724 atomic regions from SNP 138811 to 139411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,140 DEBUG Processing 355/683 atomic regions from SNP 106353 to 106953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,208 DEBUG Processing 253/668 atomic regions from SNP 75749 to 76349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,299 DEBUG Processing 190/565 atomic regions from SNP 56889 to 57490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,316 DEBUG Processing 176/603 atomic regions from SNP 52517 to 53117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,340 DEBUG Processing 464/724 atomic regions from SNP 139111 to 139711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,403 DEBUG Processing 356/683 atomic regions from SNP 106653 to 107253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,432 DEBUG Processing 254/668 atomic regions from SNP 76049 to 76649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,491 DEBUG Processing 191/565 atomic regions from SNP 57190 to 57791 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,532 DEBUG Processing 177/603 atomic regions from SNP 52817 to 53417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,584 DEBUG Processing 465/724 atomic regions from SNP 139411 to 140011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,659 DEBUG Processing 255/668 atomic regions from SNP 76349 to 76949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,667 DEBUG Processing 357/683 atomic regions from SNP 106953 to 107553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,687 DEBUG Processing 192/565 atomic regions from SNP 57491 to 58092 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,750 DEBUG Processing 178/603 atomic regions from SNP 53117 to 53717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,820 DEBUG Processing 466/724 atomic regions from SNP 139711 to 140311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,888 DEBUG Processing 193/565 atomic regions from SNP 57792 to 58393 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,890 DEBUG Processing 256/668 atomic regions from SNP 76649 to 77249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,916 DEBUG Processing 358/683 atomic regions from SNP 107253 to 107853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,966 DEBUG Processing 179/603 atomic regions from SNP 53417 to 54017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,050 DEBUG Processing 467/724 atomic regions from SNP 140011 to 140611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,085 DEBUG Processing 194/565 atomic regions from SNP 58093 to 58694 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,120 DEBUG Processing 257/668 atomic regions from SNP 76949 to 77549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,167 DEBUG Processing 359/683 atomic regions from SNP 107553 to 108153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,184 DEBUG Processing 180/603 atomic regions from SNP 53717 to 54317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,284 DEBUG Processing 468/724 atomic regions from SNP 140311 to 140911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,284 DEBUG Processing 195/565 atomic regions from SNP 58394 to 58995 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,352 DEBUG Processing 258/668 atomic regions from SNP 77249 to 77849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,397 DEBUG Processing 181/603 atomic regions from SNP 54017 to 54617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,418 DEBUG chr17 total SNP count: 161597 2025-01-31 09:54:15,418 DEBUG chr17 length: 94987271 2025-01-31 09:54:15,418 DEBUG ----------------------------------------- 2025-01-31 09:54:15,418 INFO Processing SNPs in chr17 2025-01-31 09:54:15,424 DEBUG Processing 360/683 atomic regions from SNP 107853 to 108453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,490 DEBUG Processing 196/565 atomic regions from SNP 58695 to 59296 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,513 DEBUG Processing 469/724 atomic regions from SNP 140611 to 141211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,577 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 161597)] 2025-01-31 09:54:15,584 DEBUG Processing 259/668 atomic regions from SNP 77549 to 78149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,619 DEBUG Processing 182/603 atomic regions from SNP 54317 to 54917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,686 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:15,689 DEBUG Processing 197/565 atomic regions from SNP 58996 to 59597 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,689 DEBUG Processing 361/683 atomic regions from SNP 108153 to 108753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,744 DEBUG Processing 470/724 atomic regions from SNP 140911 to 141511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,812 DEBUG Processing 260/668 atomic regions from SNP 77849 to 78449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,833 DEBUG Processing 183/603 atomic regions from SNP 54617 to 55217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,889 DEBUG Processing 198/565 atomic regions from SNP 59297 to 59898 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,943 DEBUG Processing 362/683 atomic regions from SNP 108453 to 109053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,974 DEBUG Processing 471/724 atomic regions from SNP 141211 to 141811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,033 DEBUG Processing 261/668 atomic regions from SNP 78149 to 78749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,053 DEBUG Processing 184/603 atomic regions from SNP 54917 to 55517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,093 DEBUG Processing 199/565 atomic regions from SNP 59598 to 60199 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,176 DEBUG Processing 363/683 atomic regions from SNP 108753 to 109353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,201 DEBUG Processing 472/724 atomic regions from SNP 141511 to 142111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,252 DEBUG Processing 262/668 atomic regions from SNP 78449 to 79049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,282 DEBUG Processing 185/603 atomic regions from SNP 55217 to 55817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,290 DEBUG Processing 200/565 atomic regions from SNP 59899 to 60500 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,410 DEBUG Processing 364/683 atomic regions from SNP 109053 to 109653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,432 DEBUG Processing 473/724 atomic regions from SNP 141811 to 142411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,478 DEBUG Processing 201/565 atomic regions from SNP 60200 to 60801 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,484 DEBUG Processing 263/668 atomic regions from SNP 78749 to 79349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,494 DEBUG Processing 186/603 atomic regions from SNP 55517 to 56117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,643 DEBUG Processing 365/683 atomic regions from SNP 109353 to 109953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,664 DEBUG Processing 202/565 atomic regions from SNP 60501 to 61102 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,665 DEBUG Processing 474/724 atomic regions from SNP 142111 to 142711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,711 DEBUG Processing 187/603 atomic regions from SNP 55817 to 56417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,726 DEBUG Processing 264/668 atomic regions from SNP 79049 to 79649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,848 DEBUG Processing 203/565 atomic regions from SNP 60802 to 61403 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,871 DEBUG Processing 366/683 atomic regions from SNP 109653 to 110253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,895 DEBUG Processing 475/724 atomic regions from SNP 142411 to 143011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,928 DEBUG Processing 188/603 atomic regions from SNP 56117 to 56717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,961 DEBUG Processing 265/668 atomic regions from SNP 79349 to 79949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,032 DEBUG Processing 204/565 atomic regions from SNP 61103 to 61704 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,101 DEBUG Processing 367/683 atomic regions from SNP 109953 to 110553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,124 DEBUG Processing 476/724 atomic regions from SNP 142711 to 143311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,151 DEBUG Processing 189/603 atomic regions from SNP 56417 to 57017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,186 DEBUG Processing 266/668 atomic regions from SNP 79649 to 80249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,218 DEBUG Processing 205/565 atomic regions from SNP 61404 to 62005 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,332 DEBUG Processing 368/683 atomic regions from SNP 110253 to 110853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,353 DEBUG Processing 477/724 atomic regions from SNP 143011 to 143611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,379 DEBUG Processing 190/603 atomic regions from SNP 56717 to 57317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,407 DEBUG Processing 206/565 atomic regions from SNP 61705 to 62306 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,409 DEBUG Processing 267/668 atomic regions from SNP 79949 to 80549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,566 DEBUG Processing 369/683 atomic regions from SNP 110553 to 111153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,581 DEBUG Processing 478/724 atomic regions from SNP 143311 to 143911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,593 DEBUG Processing 191/603 atomic regions from SNP 57017 to 57617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,602 DEBUG Processing 207/565 atomic regions from SNP 62006 to 62607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,635 DEBUG Processing 268/668 atomic regions from SNP 80249 to 80849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,799 DEBUG Processing 370/683 atomic regions from SNP 110853 to 111453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,800 DEBUG Processing 208/565 atomic regions from SNP 62307 to 62908 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,810 DEBUG Processing 192/603 atomic regions from SNP 57317 to 57917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,810 DEBUG Processing 479/724 atomic regions from SNP 143611 to 144211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,859 DEBUG Processing 269/668 atomic regions from SNP 80549 to 81149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,998 DEBUG Processing 209/565 atomic regions from SNP 62608 to 63209 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,030 DEBUG Processing 193/603 atomic regions from SNP 57617 to 58217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,035 DEBUG Processing 371/683 atomic regions from SNP 111153 to 111753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,042 DEBUG Processing 480/724 atomic regions from SNP 143911 to 144511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,083 DEBUG Processing 270/668 atomic regions from SNP 80849 to 81449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,197 DEBUG Processing 210/565 atomic regions from SNP 62909 to 63510 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,256 DEBUG Processing 194/603 atomic regions from SNP 57917 to 58517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,270 DEBUG Processing 372/683 atomic regions from SNP 111453 to 112053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,276 DEBUG Processing 481/724 atomic regions from SNP 144211 to 144811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,308 DEBUG Processing 271/668 atomic regions from SNP 81149 to 81749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,398 DEBUG Processing 211/565 atomic regions from SNP 63210 to 63811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,491 DEBUG Processing 195/603 atomic regions from SNP 58217 to 58817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,503 DEBUG Processing 373/683 atomic regions from SNP 111753 to 112353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,527 DEBUG Processing 482/724 atomic regions from SNP 144511 to 145111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,530 DEBUG Processing 272/668 atomic regions from SNP 81449 to 82049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,599 DEBUG Processing 212/565 atomic regions from SNP 63511 to 64111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,733 DEBUG Processing 196/603 atomic regions from SNP 58517 to 59117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,740 DEBUG Processing 374/683 atomic regions from SNP 112053 to 112653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,755 DEBUG Processing 273/668 atomic regions from SNP 81749 to 82349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,758 DEBUG Processing 483/724 atomic regions from SNP 144811 to 145411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,788 DEBUG Processing 213/565 atomic regions from SNP 63811 to 64411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,972 DEBUG Processing 375/683 atomic regions from SNP 112353 to 112953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,978 DEBUG Processing 197/603 atomic regions from SNP 58817 to 59417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,979 DEBUG Processing 274/668 atomic regions from SNP 82049 to 82649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,993 DEBUG Processing 484/724 atomic regions from SNP 145111 to 145711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,995 DEBUG Processing 214/565 atomic regions from SNP 64111 to 64711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,202 DEBUG Processing 215/565 atomic regions from SNP 64411 to 65011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,206 DEBUG Processing 275/668 atomic regions from SNP 82349 to 82949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,216 DEBUG Processing 376/683 atomic regions from SNP 112653 to 113253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,228 DEBUG Processing 198/603 atomic regions from SNP 59117 to 59717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,230 DEBUG Processing 485/724 atomic regions from SNP 145411 to 146011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,403 DEBUG Processing 216/565 atomic regions from SNP 64711 to 65311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,426 DEBUG Processing 276/668 atomic regions from SNP 82649 to 83249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,449 DEBUG Processing 377/683 atomic regions from SNP 112953 to 113553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,458 DEBUG Processing 486/724 atomic regions from SNP 145711 to 146311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,470 DEBUG Processing 199/603 atomic regions from SNP 59417 to 60017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,587 DEBUG Processing 217/565 atomic regions from SNP 65011 to 65611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,642 DEBUG Processing 277/668 atomic regions from SNP 82949 to 83549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,682 DEBUG Processing 378/683 atomic regions from SNP 113253 to 113853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,691 DEBUG Processing 487/724 atomic regions from SNP 146011 to 146611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,710 DEBUG Processing 200/603 atomic regions from SNP 59717 to 60317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,772 DEBUG Processing 218/565 atomic regions from SNP 65311 to 65911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,868 DEBUG Processing 278/668 atomic regions from SNP 83249 to 83849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,923 DEBUG Processing 488/724 atomic regions from SNP 146311 to 146911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,923 DEBUG Processing 379/683 atomic regions from SNP 113553 to 114153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,932 DEBUG Processing 201/603 atomic regions from SNP 60017 to 60617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,957 DEBUG Processing 219/565 atomic regions from SNP 65611 to 66211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,089 DEBUG Processing 279/668 atomic regions from SNP 83549 to 84149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,148 DEBUG Processing 220/565 atomic regions from SNP 65911 to 66511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,152 DEBUG Processing 202/603 atomic regions from SNP 60317 to 60917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,158 DEBUG Processing 380/683 atomic regions from SNP 113853 to 114453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,161 DEBUG Processing 489/724 atomic regions from SNP 146611 to 147211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,305 DEBUG Processing 280/668 atomic regions from SNP 83849 to 84449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,337 DEBUG Processing 221/565 atomic regions from SNP 66211 to 66811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,364 DEBUG Processing 203/603 atomic regions from SNP 60617 to 61217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,388 DEBUG Processing 381/683 atomic regions from SNP 114153 to 114753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,392 DEBUG Processing 490/724 atomic regions from SNP 146911 to 147511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,521 DEBUG Processing 222/565 atomic regions from SNP 66511 to 67111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,527 DEBUG Processing 281/668 atomic regions from SNP 84149 to 84749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,573 DEBUG Processing 204/603 atomic regions from SNP 60917 to 61517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,615 DEBUG Processing 491/724 atomic regions from SNP 147211 to 147811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,632 DEBUG Processing 382/683 atomic regions from SNP 114453 to 115053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,707 DEBUG Processing 223/565 atomic regions from SNP 66811 to 67411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,759 DEBUG Processing 282/668 atomic regions from SNP 84449 to 85049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,779 DEBUG Processing 205/603 atomic regions from SNP 61217 to 61817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,857 DEBUG Processing 492/724 atomic regions from SNP 147511 to 148111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,891 DEBUG Processing 383/683 atomic regions from SNP 114753 to 115353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,894 DEBUG Processing 224/565 atomic regions from SNP 67111 to 67711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,984 DEBUG Processing 283/668 atomic regions from SNP 84749 to 85349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,985 DEBUG Processing 206/603 atomic regions from SNP 61517 to 62117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,083 DEBUG Processing 225/565 atomic regions from SNP 67411 to 68011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,114 DEBUG Processing 493/724 atomic regions from SNP 147811 to 148411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,136 DEBUG Processing 384/683 atomic regions from SNP 115053 to 115653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,204 DEBUG Processing 207/603 atomic regions from SNP 61817 to 62417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,215 DEBUG Processing 284/668 atomic regions from SNP 85049 to 85649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,269 DEBUG Processing 226/565 atomic regions from SNP 67711 to 68311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,363 DEBUG Processing 385/683 atomic regions from SNP 115353 to 115953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,370 DEBUG Processing 494/724 atomic regions from SNP 148111 to 148711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,439 DEBUG Processing 208/603 atomic regions from SNP 62117 to 62717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,453 DEBUG Processing 227/565 atomic regions from SNP 68011 to 68611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,455 DEBUG Processing 285/668 atomic regions from SNP 85349 to 85949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,593 DEBUG Processing 386/683 atomic regions from SNP 115653 to 116253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,604 DEBUG Processing 495/724 atomic regions from SNP 148411 to 149011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,641 DEBUG Processing 228/565 atomic regions from SNP 68311 to 68911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,681 DEBUG Processing 286/668 atomic regions from SNP 85649 to 86249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,684 DEBUG Processing 209/603 atomic regions from SNP 62417 to 63017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,816 DEBUG Processing 387/683 atomic regions from SNP 115953 to 116553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,821 DEBUG Processing 229/565 atomic regions from SNP 68611 to 69211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,831 DEBUG Processing 496/724 atomic regions from SNP 148711 to 149311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,900 DEBUG Processing 287/668 atomic regions from SNP 85949 to 86549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,920 DEBUG Processing 210/603 atomic regions from SNP 62717 to 63317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,001 DEBUG Processing 230/565 atomic regions from SNP 68911 to 69511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,037 DEBUG Processing 388/683 atomic regions from SNP 116253 to 116853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,054 DEBUG Processing 497/724 atomic regions from SNP 149011 to 149611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,115 DEBUG Processing 288/668 atomic regions from SNP 86249 to 86849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,141 DEBUG Processing 211/603 atomic regions from SNP 63017 to 63617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,183 DEBUG Processing 231/565 atomic regions from SNP 69211 to 69811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,259 DEBUG Processing 389/683 atomic regions from SNP 116553 to 117153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,275 DEBUG Processing 498/724 atomic regions from SNP 149311 to 149911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,333 DEBUG Processing 289/668 atomic regions from SNP 86549 to 87149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,356 DEBUG Processing 212/603 atomic regions from SNP 63317 to 63917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,372 DEBUG Processing 232/565 atomic regions from SNP 69511 to 70111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,480 DEBUG Processing 390/683 atomic regions from SNP 116853 to 117453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,501 DEBUG Processing 499/724 atomic regions from SNP 149611 to 150211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,552 DEBUG Processing 290/668 atomic regions from SNP 86849 to 87449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,559 DEBUG Processing 233/565 atomic regions from SNP 69811 to 70411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,567 DEBUG Processing 213/603 atomic regions from SNP 63617 to 64217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,695 DEBUG Processing 391/683 atomic regions from SNP 117153 to 117753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,742 DEBUG Processing 500/724 atomic regions from SNP 149911 to 150511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,750 DEBUG Processing 234/565 atomic regions from SNP 70111 to 70711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,768 DEBUG Processing 291/668 atomic regions from SNP 87149 to 87749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,775 DEBUG Processing 214/603 atomic regions from SNP 63917 to 64517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,912 DEBUG Processing 392/683 atomic regions from SNP 117453 to 118053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,940 DEBUG Processing 235/565 atomic regions from SNP 70411 to 71011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,978 DEBUG Processing 501/724 atomic regions from SNP 150211 to 150811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,984 DEBUG Processing 292/668 atomic regions from SNP 87449 to 88049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,986 DEBUG Processing 215/603 atomic regions from SNP 64217 to 64817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,127 DEBUG Processing 236/565 atomic regions from SNP 70711 to 71311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,128 DEBUG Processing 393/683 atomic regions from SNP 117753 to 118353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,200 DEBUG Processing 216/603 atomic regions from SNP 64517 to 65117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,202 DEBUG Processing 293/668 atomic regions from SNP 87749 to 88349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,202 DEBUG Processing 502/724 atomic regions from SNP 150511 to 151111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,314 DEBUG Processing 237/565 atomic regions from SNP 71011 to 71611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,349 DEBUG Processing 394/683 atomic regions from SNP 118053 to 118653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,411 DEBUG Processing 217/603 atomic regions from SNP 64817 to 65417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,420 DEBUG Processing 294/668 atomic regions from SNP 88049 to 88649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,428 DEBUG Processing 503/724 atomic regions from SNP 150811 to 151411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,495 DEBUG Processing 238/565 atomic regions from SNP 71311 to 71911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,568 DEBUG Processing 395/683 atomic regions from SNP 118353 to 118953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,615 DEBUG Processing 218/603 atomic regions from SNP 65117 to 65717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,636 DEBUG Processing 295/668 atomic regions from SNP 88349 to 88949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,651 DEBUG Processing 504/724 atomic regions from SNP 151111 to 151711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,677 DEBUG Processing 239/565 atomic regions from SNP 71611 to 72211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,785 DEBUG Processing 396/683 atomic regions from SNP 118653 to 119253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,824 DEBUG Processing 219/603 atomic regions from SNP 65417 to 66017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,859 DEBUG Processing 296/668 atomic regions from SNP 88649 to 89249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,861 DEBUG Processing 240/565 atomic regions from SNP 71911 to 72511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,886 DEBUG Processing 505/724 atomic regions from SNP 151411 to 152011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,012 DEBUG Processing 397/683 atomic regions from SNP 118953 to 119553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,036 DEBUG Processing 220/603 atomic regions from SNP 65717 to 66317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,045 DEBUG Processing 241/565 atomic regions from SNP 72211 to 72811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,085 DEBUG Processing 297/668 atomic regions from SNP 88949 to 89549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,115 DEBUG Processing 506/724 atomic regions from SNP 151711 to 152311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,229 DEBUG Processing 242/565 atomic regions from SNP 72511 to 73111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,237 DEBUG Processing 398/683 atomic regions from SNP 119253 to 119853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,243 DEBUG Processing 221/603 atomic regions from SNP 66017 to 66617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,307 DEBUG Processing 298/668 atomic regions from SNP 89249 to 89849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,362 DEBUG Processing 507/724 atomic regions from SNP 152011 to 152611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,413 DEBUG Processing 243/565 atomic regions from SNP 72811 to 73411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,449 DEBUG Processing 222/603 atomic regions from SNP 66317 to 66917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,463 DEBUG Processing 399/683 atomic regions from SNP 119553 to 120153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,526 DEBUG Processing 299/668 atomic regions from SNP 89549 to 90149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,604 DEBUG Processing 508/724 atomic regions from SNP 152311 to 152911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,604 DEBUG Processing 244/565 atomic regions from SNP 73111 to 73711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,658 DEBUG Processing 223/603 atomic regions from SNP 66617 to 67217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,694 DEBUG Processing 400/683 atomic regions from SNP 119853 to 120453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,740 DEBUG Processing 300/668 atomic regions from SNP 89849 to 90449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,796 DEBUG Processing 245/565 atomic regions from SNP 73411 to 74011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,826 DEBUG Processing 509/724 atomic regions from SNP 152611 to 153211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,862 DEBUG Processing 224/603 atomic regions from SNP 66917 to 67517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,921 DEBUG Processing 401/683 atomic regions from SNP 120153 to 120753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,954 DEBUG Processing 301/668 atomic regions from SNP 90149 to 90749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,983 DEBUG Processing 246/565 atomic regions from SNP 73711 to 74311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,065 DEBUG Processing 225/603 atomic regions from SNP 67217 to 67817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,069 DEBUG Processing 510/724 atomic regions from SNP 152911 to 153511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,142 DEBUG Processing 402/683 atomic regions from SNP 120453 to 121053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,166 DEBUG Processing 302/668 atomic regions from SNP 90449 to 91049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,169 DEBUG Processing 247/565 atomic regions from SNP 74011 to 74611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,268 DEBUG Processing 226/603 atomic regions from SNP 67517 to 68117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,310 DEBUG Processing 511/724 atomic regions from SNP 153211 to 153811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,350 DEBUG Processing 248/565 atomic regions from SNP 74311 to 74911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,366 DEBUG Processing 403/683 atomic regions from SNP 120753 to 121353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,380 DEBUG Processing 303/668 atomic regions from SNP 90749 to 91349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,472 DEBUG Processing 227/603 atomic regions from SNP 67817 to 68417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,544 DEBUG Processing 249/565 atomic regions from SNP 74611 to 75211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,561 DEBUG Processing 512/724 atomic regions from SNP 153511 to 154111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,596 DEBUG Processing 404/683 atomic regions from SNP 121053 to 121653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,598 DEBUG Processing 304/668 atomic regions from SNP 91049 to 91649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,677 DEBUG Processing 228/603 atomic regions from SNP 68117 to 68717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,731 DEBUG Processing 250/565 atomic regions from SNP 74911 to 75511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,804 DEBUG Processing 513/724 atomic regions from SNP 153811 to 154411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,820 DEBUG Processing 305/668 atomic regions from SNP 91349 to 91949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,842 DEBUG Processing 405/683 atomic regions from SNP 121353 to 121953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,884 DEBUG Processing 229/603 atomic regions from SNP 68417 to 69017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,920 DEBUG Processing 251/565 atomic regions from SNP 75211 to 75811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,049 DEBUG Processing 514/724 atomic regions from SNP 154111 to 154711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,055 DEBUG Processing 306/668 atomic regions from SNP 91649 to 92249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,090 DEBUG Processing 230/603 atomic regions from SNP 68717 to 69317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,094 DEBUG Processing 406/683 atomic regions from SNP 121653 to 122253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,109 DEBUG Processing 252/565 atomic regions from SNP 75511 to 76111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,286 DEBUG Processing 307/668 atomic regions from SNP 91949 to 92549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,294 DEBUG Processing 515/724 atomic regions from SNP 154411 to 155011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,300 DEBUG Processing 253/565 atomic regions from SNP 75811 to 76411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,303 DEBUG Processing 231/603 atomic regions from SNP 69017 to 69617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,361 DEBUG Processing 407/683 atomic regions from SNP 121953 to 122553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,485 DEBUG Processing 254/565 atomic regions from SNP 76111 to 76711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,503 DEBUG Processing 308/668 atomic regions from SNP 92249 to 92849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,515 DEBUG Processing 232/603 atomic regions from SNP 69317 to 69917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,530 DEBUG Processing 516/724 atomic regions from SNP 154711 to 155311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,623 DEBUG Processing 408/683 atomic regions from SNP 122253 to 122853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,672 DEBUG Processing 255/565 atomic regions from SNP 76411 to 77011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,719 DEBUG Processing 309/668 atomic regions from SNP 92549 to 93149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,723 DEBUG Processing 233/603 atomic regions from SNP 69617 to 70217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,754 DEBUG Processing 517/724 atomic regions from SNP 155011 to 155611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,862 DEBUG Processing 256/565 atomic regions from SNP 76711 to 77311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,883 DEBUG Processing 409/683 atomic regions from SNP 122553 to 123153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,932 DEBUG Processing 234/603 atomic regions from SNP 69917 to 70517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,933 DEBUG Processing 310/668 atomic regions from SNP 92849 to 93449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,980 DEBUG Processing 518/724 atomic regions from SNP 155311 to 155911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,051 DEBUG Processing 257/565 atomic regions from SNP 77011 to 77611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,141 DEBUG Processing 410/683 atomic regions from SNP 122853 to 123453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,147 DEBUG Processing 235/603 atomic regions from SNP 70217 to 70817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,156 DEBUG Processing 311/668 atomic regions from SNP 93149 to 93749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,212 DEBUG Processing 519/724 atomic regions from SNP 155611 to 156211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,238 DEBUG Processing 258/565 atomic regions from SNP 77311 to 77911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,356 DEBUG Processing 236/603 atomic regions from SNP 70517 to 71117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,374 DEBUG Processing 312/668 atomic regions from SNP 93449 to 94049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,395 DEBUG Processing 411/683 atomic regions from SNP 123153 to 123753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,419 DEBUG Processing 259/565 atomic regions from SNP 77611 to 78211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,437 DEBUG Processing 520/724 atomic regions from SNP 155911 to 156511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,563 DEBUG Processing 237/603 atomic regions from SNP 70817 to 71417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,595 DEBUG Processing 313/668 atomic regions from SNP 93749 to 94349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,600 DEBUG Processing 260/565 atomic regions from SNP 77911 to 78511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,637 DEBUG Processing 412/683 atomic regions from SNP 123453 to 124053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,657 DEBUG Processing 521/724 atomic regions from SNP 156211 to 156811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,766 DEBUG Processing 238/603 atomic regions from SNP 71117 to 71717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,782 DEBUG Processing 261/565 atomic regions from SNP 78211 to 78811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,814 DEBUG Processing 314/668 atomic regions from SNP 94049 to 94649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,866 DEBUG Processing 413/683 atomic regions from SNP 123753 to 124353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,877 DEBUG Processing 522/724 atomic regions from SNP 156511 to 157111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,972 DEBUG Processing 239/603 atomic regions from SNP 71417 to 72017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,973 DEBUG Processing 262/565 atomic regions from SNP 78511 to 79111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,035 DEBUG Processing 315/668 atomic regions from SNP 94349 to 94949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,091 DEBUG Processing 414/683 atomic regions from SNP 124053 to 124653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,098 DEBUG Processing 523/724 atomic regions from SNP 156811 to 157411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,156 DEBUG Processing 263/565 atomic regions from SNP 78811 to 79411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,174 DEBUG Processing 240/603 atomic regions from SNP 71717 to 72317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,249 DEBUG Processing 316/668 atomic regions from SNP 94649 to 95249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,318 DEBUG Processing 415/683 atomic regions from SNP 124353 to 124953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,321 DEBUG Processing 524/724 atomic regions from SNP 157111 to 157711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,345 DEBUG Processing 264/565 atomic regions from SNP 79111 to 79711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,382 DEBUG Processing 241/603 atomic regions from SNP 72017 to 72617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,466 DEBUG Processing 317/668 atomic regions from SNP 94949 to 95549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,533 DEBUG Processing 265/565 atomic regions from SNP 79411 to 80011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,549 DEBUG Processing 525/724 atomic regions from SNP 157411 to 158011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,551 DEBUG Processing 416/683 atomic regions from SNP 124653 to 125253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,590 DEBUG Processing 242/603 atomic regions from SNP 72317 to 72917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,683 DEBUG Processing 318/668 atomic regions from SNP 95249 to 95849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,720 DEBUG Processing 266/565 atomic regions from SNP 79711 to 80311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,783 DEBUG Processing 526/724 atomic regions from SNP 157711 to 158311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,787 DEBUG Processing 417/683 atomic regions from SNP 124953 to 125553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,802 DEBUG Processing 243/603 atomic regions from SNP 72617 to 73217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,895 DEBUG Processing 319/668 atomic regions from SNP 95549 to 96149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,904 DEBUG Processing 267/565 atomic regions from SNP 80011 to 80611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,012 DEBUG Processing 527/724 atomic regions from SNP 158011 to 158611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,013 DEBUG Processing 244/603 atomic regions from SNP 72917 to 73517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,020 DEBUG Processing 418/683 atomic regions from SNP 125253 to 125853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,087 DEBUG Processing 268/565 atomic regions from SNP 80311 to 80911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,110 DEBUG Processing 320/668 atomic regions from SNP 95849 to 96449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,225 DEBUG Processing 245/603 atomic regions from SNP 73217 to 73817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,240 DEBUG Processing 528/724 atomic regions from SNP 158311 to 158911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,250 DEBUG Processing 419/683 atomic regions from SNP 125553 to 126153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,271 DEBUG Processing 269/565 atomic regions from SNP 80611 to 81211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,326 DEBUG Processing 321/668 atomic regions from SNP 96149 to 96749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,441 DEBUG Processing 246/603 atomic regions from SNP 73517 to 74117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,465 DEBUG Processing 270/565 atomic regions from SNP 80911 to 81511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,473 DEBUG Processing 529/724 atomic regions from SNP 158611 to 159211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,486 DEBUG Processing 420/683 atomic regions from SNP 125853 to 126453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,546 DEBUG Processing 322/668 atomic regions from SNP 96449 to 97049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,655 DEBUG Processing 247/603 atomic regions from SNP 73817 to 74417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,660 DEBUG Processing 271/565 atomic regions from SNP 81211 to 81811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,703 DEBUG Processing 530/724 atomic regions from SNP 158911 to 159511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,727 DEBUG Processing 421/683 atomic regions from SNP 126153 to 126753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,761 DEBUG Processing 323/668 atomic regions from SNP 96749 to 97349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,840 DEBUG Processing 272/565 atomic regions from SNP 81511 to 82111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,864 DEBUG Processing 248/603 atomic regions from SNP 74117 to 74717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,926 DEBUG Processing 531/724 atomic regions from SNP 159211 to 159811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,952 DEBUG Processing 422/683 atomic regions from SNP 126453 to 127053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,975 DEBUG Processing 324/668 atomic regions from SNP 97049 to 97649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,022 DEBUG Processing 273/565 atomic regions from SNP 81811 to 82411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,073 DEBUG Processing 249/603 atomic regions from SNP 74417 to 75017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,156 DEBUG Processing 532/724 atomic regions from SNP 159511 to 160111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,180 DEBUG Processing 423/683 atomic regions from SNP 126753 to 127353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,193 DEBUG Processing 325/668 atomic regions from SNP 97349 to 97949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,202 DEBUG Processing 274/565 atomic regions from SNP 82111 to 82711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,281 DEBUG Processing 250/603 atomic regions from SNP 74717 to 75317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,388 DEBUG Processing 533/724 atomic regions from SNP 159811 to 160411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,390 DEBUG Processing 275/565 atomic regions from SNP 82411 to 83011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,408 DEBUG Processing 424/683 atomic regions from SNP 127053 to 127653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,412 DEBUG Processing 326/668 atomic regions from SNP 97649 to 98249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,488 DEBUG Processing 251/603 atomic regions from SNP 75017 to 75617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,577 DEBUG Processing 276/565 atomic regions from SNP 82711 to 83311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,620 DEBUG Processing 534/724 atomic regions from SNP 160111 to 160711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,633 DEBUG Processing 327/668 atomic regions from SNP 97949 to 98549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,637 DEBUG Processing 425/683 atomic regions from SNP 127353 to 127953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,696 DEBUG Processing 252/603 atomic regions from SNP 75317 to 75917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,760 DEBUG Processing 277/565 atomic regions from SNP 83011 to 83611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,850 DEBUG Processing 535/724 atomic regions from SNP 160411 to 161011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,854 DEBUG Processing 328/668 atomic regions from SNP 98249 to 98849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,869 DEBUG Processing 426/683 atomic regions from SNP 127653 to 128253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,909 DEBUG Processing 253/603 atomic regions from SNP 75617 to 76217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,948 DEBUG Processing 278/565 atomic regions from SNP 83311 to 83911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,070 DEBUG Processing 329/668 atomic regions from SNP 98549 to 99149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,081 DEBUG Processing 536/724 atomic regions from SNP 160711 to 161311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,097 DEBUG Processing 427/683 atomic regions from SNP 127953 to 128553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,122 DEBUG Processing 254/603 atomic regions from SNP 75917 to 76517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,128 DEBUG Processing 279/565 atomic regions from SNP 83611 to 84211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,285 DEBUG Processing 330/668 atomic regions from SNP 98849 to 99449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,313 DEBUG Processing 537/724 atomic regions from SNP 161011 to 161611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,314 DEBUG Processing 280/565 atomic regions from SNP 83911 to 84511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,326 DEBUG Processing 428/683 atomic regions from SNP 128253 to 128853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,337 DEBUG Processing 255/603 atomic regions from SNP 76217 to 76817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,494 DEBUG Processing 281/565 atomic regions from SNP 84211 to 84811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,499 DEBUG Processing 331/668 atomic regions from SNP 99149 to 99749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,546 DEBUG Processing 538/724 atomic regions from SNP 161311 to 161911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,556 DEBUG Processing 256/603 atomic regions from SNP 76517 to 77117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,556 DEBUG Processing 429/683 atomic regions from SNP 128553 to 129153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,682 DEBUG Processing 282/565 atomic regions from SNP 84511 to 85111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,705 DEBUG Processing 332/668 atomic regions from SNP 99449 to 100049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,773 DEBUG Processing 257/603 atomic regions from SNP 76817 to 77417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,780 DEBUG Processing 539/724 atomic regions from SNP 161611 to 162211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,790 DEBUG Processing 430/683 atomic regions from SNP 128853 to 129453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,859 DEBUG Processing 283/565 atomic regions from SNP 84811 to 85411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,908 DEBUG Processing 333/668 atomic regions from SNP 99749 to 100349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,986 DEBUG Processing 258/603 atomic regions from SNP 77117 to 77717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,008 DEBUG Processing 540/724 atomic regions from SNP 161911 to 162511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,021 DEBUG Processing 431/683 atomic regions from SNP 129153 to 129753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,037 DEBUG Processing 284/565 atomic regions from SNP 85111 to 85711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,114 DEBUG Processing 334/668 atomic regions from SNP 100049 to 100649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,196 DEBUG Processing 259/603 atomic regions from SNP 77417 to 78017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,214 DEBUG Processing 285/565 atomic regions from SNP 85411 to 86011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,236 DEBUG Processing 541/724 atomic regions from SNP 162211 to 162811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,244 DEBUG Processing 432/683 atomic regions from SNP 129453 to 130053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,324 DEBUG Processing 335/668 atomic regions from SNP 100349 to 100949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,397 DEBUG Processing 286/565 atomic regions from SNP 85711 to 86311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,407 DEBUG Processing 260/603 atomic regions from SNP 77717 to 78317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,468 DEBUG Processing 542/724 atomic regions from SNP 162511 to 163111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,472 DEBUG Processing 433/683 atomic regions from SNP 129753 to 130353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,539 DEBUG Processing 336/668 atomic regions from SNP 100649 to 101249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,573 DEBUG Processing 287/565 atomic regions from SNP 86011 to 86611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,609 DEBUG Processing 261/603 atomic regions from SNP 78017 to 78617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,691 DEBUG Processing 543/724 atomic regions from SNP 162811 to 163411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,707 DEBUG Processing 434/683 atomic regions from SNP 130053 to 130653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,745 DEBUG Processing 337/668 atomic regions from SNP 100949 to 101549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,748 DEBUG Processing 288/565 atomic regions from SNP 86311 to 86911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,810 DEBUG Processing 262/603 atomic regions from SNP 78317 to 78917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,917 DEBUG Processing 544/724 atomic regions from SNP 163111 to 163711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,931 DEBUG Processing 289/565 atomic regions from SNP 86611 to 87211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,955 DEBUG Processing 435/683 atomic regions from SNP 130353 to 130953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,956 DEBUG Processing 338/668 atomic regions from SNP 101249 to 101849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,016 DEBUG Processing 263/603 atomic regions from SNP 78617 to 79217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,110 DEBUG Processing 290/565 atomic regions from SNP 86911 to 87511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,144 DEBUG Processing 545/724 atomic regions from SNP 163411 to 164011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,169 DEBUG Processing 339/668 atomic regions from SNP 101549 to 102149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,182 DEBUG Processing 436/683 atomic regions from SNP 130653 to 131253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,227 DEBUG Processing 264/603 atomic regions from SNP 78917 to 79517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,290 DEBUG Processing 291/565 atomic regions from SNP 87211 to 87811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,375 DEBUG Processing 546/724 atomic regions from SNP 163711 to 164311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,390 DEBUG Processing 340/668 atomic regions from SNP 101849 to 102449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,415 DEBUG Processing 437/683 atomic regions from SNP 130953 to 131553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,440 DEBUG Processing 265/603 atomic regions from SNP 79217 to 79817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,470 DEBUG Processing 292/565 atomic regions from SNP 87511 to 88111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,604 DEBUG Processing 547/724 atomic regions from SNP 164011 to 164611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,612 DEBUG Processing 341/668 atomic regions from SNP 102149 to 102749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,650 DEBUG Processing 293/565 atomic regions from SNP 87811 to 88411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,651 DEBUG Processing 438/683 atomic regions from SNP 131253 to 131853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,658 DEBUG Processing 266/603 atomic regions from SNP 79517 to 80117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,835 DEBUG Processing 548/724 atomic regions from SNP 164311 to 164911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,838 DEBUG Processing 342/668 atomic regions from SNP 102449 to 103049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,839 DEBUG Processing 294/565 atomic regions from SNP 88111 to 88711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,879 DEBUG Processing 267/603 atomic regions from SNP 79817 to 80417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,890 DEBUG Processing 439/683 atomic regions from SNP 131553 to 132153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,022 DEBUG Processing 295/565 atomic regions from SNP 88411 to 89011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,064 DEBUG Processing 343/668 atomic regions from SNP 102749 to 103349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,069 DEBUG Processing 549/724 atomic regions from SNP 164611 to 165211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,103 DEBUG Processing 268/603 atomic regions from SNP 80117 to 80717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,126 DEBUG Processing 440/683 atomic regions from SNP 131853 to 132453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,205 DEBUG Processing 296/565 atomic regions from SNP 88711 to 89311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,280 DEBUG Processing 344/668 atomic regions from SNP 103049 to 103649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,291 DEBUG Processing 550/724 atomic regions from SNP 164911 to 165511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,316 DEBUG Processing 269/603 atomic regions from SNP 80417 to 81017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,357 DEBUG Processing 441/683 atomic regions from SNP 132153 to 132753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,385 DEBUG Processing 297/565 atomic regions from SNP 89011 to 89611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,494 DEBUG Processing 345/668 atomic regions from SNP 103349 to 103949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,525 DEBUG Processing 551/724 atomic regions from SNP 165211 to 165811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,525 DEBUG Processing 270/603 atomic regions from SNP 80717 to 81317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,565 DEBUG Processing 298/565 atomic regions from SNP 89311 to 89911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,582 DEBUG Processing 442/683 atomic regions from SNP 132453 to 133053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,708 DEBUG Processing 346/668 atomic regions from SNP 103649 to 104249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,738 DEBUG Processing 271/603 atomic regions from SNP 81017 to 81617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,752 DEBUG Processing 299/565 atomic regions from SNP 89611 to 90211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,775 DEBUG Processing 552/724 atomic regions from SNP 165511 to 166111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,811 DEBUG Processing 443/683 atomic regions from SNP 132753 to 133353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,847 DEBUG Segmenting atomic regions: 2025-01-31 09:54:34,916 DEBUG Processing 347/668 atomic regions from SNP 103949 to 104549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,921 DEBUG Processing 1/537 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:34,938 DEBUG Processing 300/565 atomic regions from SNP 89911 to 90511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,943 DEBUG Processing 272/603 atomic regions from SNP 81317 to 81917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,013 DEBUG Processing 553/724 atomic regions from SNP 165811 to 166411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,037 DEBUG Processing 444/683 atomic regions from SNP 133053 to 133653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,107 DEBUG Processing 2/537 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:35,122 DEBUG Processing 348/668 atomic regions from SNP 104249 to 104849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,125 DEBUG Processing 301/565 atomic regions from SNP 90211 to 90811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,151 DEBUG Processing 273/603 atomic regions from SNP 81617 to 82217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,247 DEBUG Processing 554/724 atomic regions from SNP 166111 to 166711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,268 DEBUG Processing 445/683 atomic regions from SNP 133353 to 133953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,290 DEBUG Processing 3/537 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:35,314 DEBUG Processing 302/565 atomic regions from SNP 90511 to 91111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,336 DEBUG Processing 349/668 atomic regions from SNP 104549 to 105149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,355 DEBUG Processing 274/603 atomic regions from SNP 81917 to 82517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,470 DEBUG Processing 555/724 atomic regions from SNP 166411 to 167011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,474 DEBUG Processing 4/537 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:35,502 DEBUG Processing 446/683 atomic regions from SNP 133653 to 134253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,503 DEBUG Processing 303/565 atomic regions from SNP 90811 to 91411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,553 DEBUG Processing 350/668 atomic regions from SNP 104849 to 105449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,562 DEBUG Processing 275/603 atomic regions from SNP 82217 to 82817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,657 DEBUG Processing 5/537 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:35,693 DEBUG Processing 304/565 atomic regions from SNP 91111 to 91711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,712 DEBUG Processing 556/724 atomic regions from SNP 166711 to 167311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,738 DEBUG Processing 447/683 atomic regions from SNP 133953 to 134553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,773 DEBUG Processing 351/668 atomic regions from SNP 105149 to 105749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,776 DEBUG Processing 276/603 atomic regions from SNP 82517 to 83117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,840 DEBUG Processing 6/537 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:35,887 DEBUG Processing 305/565 atomic regions from SNP 91411 to 92011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,970 DEBUG Processing 557/724 atomic regions from SNP 167011 to 167611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,980 DEBUG Processing 448/683 atomic regions from SNP 134253 to 134853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,993 DEBUG Processing 277/603 atomic regions from SNP 82817 to 83417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,002 DEBUG Processing 352/668 atomic regions from SNP 105449 to 106049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,024 DEBUG Processing 7/537 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:36,073 DEBUG Processing 306/565 atomic regions from SNP 91711 to 92311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,210 DEBUG Processing 8/537 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:36,210 DEBUG Processing 278/603 atomic regions from SNP 83117 to 83717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,215 DEBUG Processing 449/683 atomic regions from SNP 134553 to 135153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,218 DEBUG Processing 558/724 atomic regions from SNP 167311 to 167911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,231 DEBUG Processing 353/668 atomic regions from SNP 105749 to 106349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,261 DEBUG Processing 307/565 atomic regions from SNP 92011 to 92611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,397 DEBUG Processing 9/537 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:36,427 DEBUG Processing 279/603 atomic regions from SNP 83417 to 84017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,454 DEBUG Processing 308/565 atomic regions from SNP 92311 to 92911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,462 DEBUG Processing 354/668 atomic regions from SNP 106049 to 106649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,471 DEBUG Processing 559/724 atomic regions from SNP 167611 to 168211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,471 DEBUG Processing 450/683 atomic regions from SNP 134853 to 135453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,576 DEBUG Processing 10/537 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:36,640 DEBUG Processing 280/603 atomic regions from SNP 83717 to 84317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,646 DEBUG Processing 309/565 atomic regions from SNP 92611 to 93211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,690 DEBUG Processing 355/668 atomic regions from SNP 106349 to 106949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,714 DEBUG Processing 560/724 atomic regions from SNP 167911 to 168511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,718 DEBUG Processing 451/683 atomic regions from SNP 135153 to 135753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,751 DEBUG Processing 11/537 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:36,832 DEBUG Processing 310/565 atomic regions from SNP 92911 to 93511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,844 DEBUG Processing 281/603 atomic regions from SNP 84017 to 84617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,910 DEBUG Processing 356/668 atomic regions from SNP 106649 to 107249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,931 DEBUG Processing 12/537 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:36,944 DEBUG Processing 452/683 atomic regions from SNP 135453 to 136053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,960 DEBUG Processing 561/724 atomic regions from SNP 168211 to 168811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,014 DEBUG Processing 311/565 atomic regions from SNP 93211 to 93811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,041 DEBUG Processing 282/603 atomic regions from SNP 84317 to 84917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,118 DEBUG Processing 13/537 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:37,127 DEBUG Processing 357/668 atomic regions from SNP 106949 to 107549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,172 DEBUG Processing 453/683 atomic regions from SNP 135753 to 136353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,199 DEBUG Processing 312/565 atomic regions from SNP 93511 to 94111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,200 DEBUG Processing 562/724 atomic regions from SNP 168511 to 169111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,240 DEBUG Processing 283/603 atomic regions from SNP 84617 to 85217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,309 DEBUG Processing 14/537 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:37,344 DEBUG Processing 358/668 atomic regions from SNP 107249 to 107849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,388 DEBUG Processing 313/565 atomic regions from SNP 93811 to 94411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,398 DEBUG Processing 454/683 atomic regions from SNP 136053 to 136653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,443 DEBUG Processing 284/603 atomic regions from SNP 84917 to 85517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,443 DEBUG Processing 563/724 atomic regions from SNP 168811 to 169411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,495 DEBUG Processing 15/537 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:37,555 DEBUG Processing 359/668 atomic regions from SNP 107549 to 108149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,581 DEBUG Processing 314/565 atomic regions from SNP 94111 to 94711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,647 DEBUG Processing 455/683 atomic regions from SNP 136353 to 136953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,651 DEBUG Processing 285/603 atomic regions from SNP 85217 to 85817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,680 DEBUG Processing 564/724 atomic regions from SNP 169111 to 169711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,689 DEBUG Processing 16/537 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:37,763 DEBUG Processing 360/668 atomic regions from SNP 107849 to 108449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,763 DEBUG Processing 315/565 atomic regions from SNP 94411 to 95011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,862 DEBUG Processing 286/603 atomic regions from SNP 85517 to 86117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,878 DEBUG Processing 17/537 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:37,888 DEBUG Processing 456/683 atomic regions from SNP 136653 to 137253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,904 DEBUG Processing 565/724 atomic regions from SNP 169411 to 170011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,947 DEBUG Processing 316/565 atomic regions from SNP 94711 to 95311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,973 DEBUG Processing 361/668 atomic regions from SNP 108149 to 108749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,078 DEBUG Processing 287/603 atomic regions from SNP 85817 to 86417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,082 DEBUG Processing 18/537 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:38,115 DEBUG Processing 457/683 atomic regions from SNP 136953 to 137553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,129 DEBUG Processing 566/724 atomic regions from SNP 169711 to 170311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,163 DEBUG Processing 317/565 atomic regions from SNP 95011 to 95611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,184 DEBUG Processing 362/668 atomic regions from SNP 108449 to 109049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,283 DEBUG Processing 19/537 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:38,290 DEBUG Processing 288/603 atomic regions from SNP 86117 to 86717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,349 DEBUG Processing 458/683 atomic regions from SNP 137253 to 137853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,361 DEBUG Processing 567/724 atomic regions from SNP 170011 to 170611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,374 DEBUG Processing 318/565 atomic regions from SNP 95311 to 95911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,410 DEBUG Processing 363/668 atomic regions from SNP 108749 to 109349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,476 DEBUG Processing 20/537 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:38,496 DEBUG Processing 289/603 atomic regions from SNP 86417 to 87017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,567 DEBUG Processing 319/565 atomic regions from SNP 95611 to 96211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,587 DEBUG Processing 459/683 atomic regions from SNP 137553 to 138153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,610 DEBUG Processing 568/724 atomic regions from SNP 170311 to 170911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,650 DEBUG Processing 364/668 atomic regions from SNP 109049 to 109649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,674 DEBUG Processing 21/537 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:38,705 DEBUG Processing 290/603 atomic regions from SNP 86717 to 87317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,760 DEBUG Processing 320/565 atomic regions from SNP 95911 to 96511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,826 DEBUG Processing 460/683 atomic regions from SNP 137853 to 138453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,875 DEBUG Processing 569/724 atomic regions from SNP 170611 to 171211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,881 DEBUG Processing 22/537 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:38,898 DEBUG Processing 365/668 atomic regions from SNP 109349 to 109949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,920 DEBUG Processing 291/603 atomic regions from SNP 87017 to 87617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,956 DEBUG Processing 321/565 atomic regions from SNP 96211 to 96811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,066 DEBUG Processing 461/683 atomic regions from SNP 138153 to 138753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,075 DEBUG Processing 23/537 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:39,133 DEBUG Processing 366/668 atomic regions from SNP 109649 to 110249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,134 DEBUG Processing 292/603 atomic regions from SNP 87317 to 87917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,140 DEBUG Processing 570/724 atomic regions from SNP 170911 to 171511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,143 DEBUG Processing 322/565 atomic regions from SNP 96511 to 97111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,261 DEBUG Processing 24/537 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:39,302 DEBUG Processing 462/683 atomic regions from SNP 138453 to 139053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,336 DEBUG Processing 323/565 atomic regions from SNP 96811 to 97411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,351 DEBUG Processing 293/603 atomic regions from SNP 87617 to 88217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,372 DEBUG Processing 367/668 atomic regions from SNP 109949 to 110549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,400 DEBUG Processing 571/724 atomic regions from SNP 171211 to 171811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,449 DEBUG Processing 25/537 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:39,531 DEBUG Processing 463/683 atomic regions from SNP 138753 to 139353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,532 DEBUG Processing 324/565 atomic regions from SNP 97111 to 97711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,566 DEBUG Processing 294/603 atomic regions from SNP 87917 to 88517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,624 DEBUG Processing 368/668 atomic regions from SNP 110249 to 110849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,639 DEBUG Processing 26/537 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:39,669 DEBUG Processing 572/724 atomic regions from SNP 171511 to 172111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,724 DEBUG Processing 325/565 atomic regions from SNP 97411 to 98011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,765 DEBUG Processing 464/683 atomic regions from SNP 139053 to 139653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,779 DEBUG Processing 295/603 atomic regions from SNP 88217 to 88817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,825 DEBUG Processing 27/537 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:39,866 DEBUG Processing 369/668 atomic regions from SNP 110549 to 111149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,920 DEBUG Processing 326/565 atomic regions from SNP 97711 to 98311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,942 DEBUG Processing 573/724 atomic regions from SNP 171811 to 172411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,995 DEBUG Processing 296/603 atomic regions from SNP 88517 to 89117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,998 DEBUG Processing 465/683 atomic regions from SNP 139353 to 139953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,019 DEBUG Processing 28/537 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:40,099 DEBUG Processing 370/668 atomic regions from SNP 110849 to 111449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,132 DEBUG Processing 327/565 atomic regions from SNP 98011 to 98611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,211 DEBUG Processing 297/603 atomic regions from SNP 88817 to 89417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,211 DEBUG Processing 574/724 atomic regions from SNP 172111 to 172711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,230 DEBUG Processing 466/683 atomic regions from SNP 139653 to 140253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,233 DEBUG Processing 29/537 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:40,342 DEBUG Processing 371/668 atomic regions from SNP 111149 to 111749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,358 DEBUG Processing 328/565 atomic regions from SNP 98311 to 98911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,450 DEBUG Processing 298/603 atomic regions from SNP 89117 to 89717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,455 DEBUG Processing 30/537 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:40,483 DEBUG Processing 575/724 atomic regions from SNP 172411 to 173011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,491 DEBUG Processing 467/683 atomic regions from SNP 139953 to 140553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,583 DEBUG Processing 329/565 atomic regions from SNP 98611 to 99211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,585 DEBUG Processing 372/668 atomic regions from SNP 111449 to 112049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,668 DEBUG Processing 31/537 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:40,690 DEBUG Processing 299/603 atomic regions from SNP 89417 to 90017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,747 DEBUG Processing 468/683 atomic regions from SNP 140253 to 140853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,762 DEBUG Processing 576/724 atomic regions from SNP 172711 to 173311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,805 DEBUG Processing 330/565 atomic regions from SNP 98911 to 99511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,832 DEBUG Processing 373/668 atomic regions from SNP 111749 to 112349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,885 DEBUG Processing 32/537 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:40,934 DEBUG Processing 300/603 atomic regions from SNP 89717 to 90317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,007 DEBUG Processing 469/683 atomic regions from SNP 140553 to 141153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,024 DEBUG Processing 577/724 atomic regions from SNP 173011 to 173611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,028 DEBUG Processing 331/565 atomic regions from SNP 99211 to 99811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,077 DEBUG Processing 374/668 atomic regions from SNP 112049 to 112649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,100 DEBUG Processing 33/537 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:41,160 DEBUG Processing 301/603 atomic regions from SNP 90017 to 90617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,246 DEBUG Processing 332/565 atomic regions from SNP 99511 to 100111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,263 DEBUG Processing 470/683 atomic regions from SNP 140853 to 141453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,303 DEBUG Processing 578/724 atomic regions from SNP 173311 to 173911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,311 DEBUG Processing 34/537 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:41,335 DEBUG Processing 375/668 atomic regions from SNP 112349 to 112949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,392 DEBUG Processing 302/603 atomic regions from SNP 90317 to 90917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,448 DEBUG Processing 333/565 atomic regions from SNP 99811 to 100411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,509 DEBUG Processing 471/683 atomic regions from SNP 141153 to 141753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,511 DEBUG Processing 35/537 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:41,576 DEBUG Processing 579/724 atomic regions from SNP 173611 to 174211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,592 DEBUG Processing 376/668 atomic regions from SNP 112649 to 113249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,617 DEBUG Processing 303/603 atomic regions from SNP 90617 to 91217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,643 DEBUG Processing 334/565 atomic regions from SNP 100111 to 100711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,701 DEBUG Processing 36/537 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:41,749 DEBUG Processing 472/683 atomic regions from SNP 141453 to 142053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,826 DEBUG Processing 377/668 atomic regions from SNP 112949 to 113549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,839 DEBUG Processing 304/603 atomic regions from SNP 90917 to 91517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,842 DEBUG Processing 335/565 atomic regions from SNP 100411 to 101011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,849 DEBUG Processing 580/724 atomic regions from SNP 173911 to 174511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,888 DEBUG Processing 37/537 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:41,985 DEBUG Processing 473/683 atomic regions from SNP 141753 to 142353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,045 DEBUG Processing 336/565 atomic regions from SNP 100711 to 101311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,060 DEBUG Processing 378/668 atomic regions from SNP 113249 to 113849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,064 DEBUG Processing 305/603 atomic regions from SNP 91217 to 91817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,080 DEBUG Processing 38/537 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:42,121 DEBUG Processing 581/724 atomic regions from SNP 174211 to 174811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,220 DEBUG Processing 474/683 atomic regions from SNP 142053 to 142653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,245 DEBUG Processing 337/565 atomic regions from SNP 101011 to 101611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,272 DEBUG Processing 39/537 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:42,282 DEBUG Processing 306/603 atomic regions from SNP 91517 to 92117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,284 DEBUG Processing 379/668 atomic regions from SNP 113549 to 114149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,380 DEBUG Processing 582/724 atomic regions from SNP 174511 to 175111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,442 DEBUG Processing 338/565 atomic regions from SNP 101311 to 101911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,447 DEBUG Processing 475/683 atomic regions from SNP 142353 to 142953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,463 DEBUG Processing 40/537 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:42,498 DEBUG Processing 307/603 atomic regions from SNP 91817 to 92417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,503 DEBUG Processing 380/668 atomic regions from SNP 113849 to 114449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,604 DEBUG Processing 583/724 atomic regions from SNP 174811 to 175411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,633 DEBUG Processing 339/565 atomic regions from SNP 101611 to 102211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,649 DEBUG Processing 41/537 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:42,676 DEBUG Processing 476/683 atomic regions from SNP 142653 to 143253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,713 DEBUG Processing 308/603 atomic regions from SNP 92117 to 92717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,746 DEBUG Processing 381/668 atomic regions from SNP 114149 to 114749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,823 DEBUG Processing 584/724 atomic regions from SNP 175111 to 175711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,829 DEBUG Processing 340/565 atomic regions from SNP 101911 to 102511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,838 DEBUG Processing 42/537 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:42,897 DEBUG Processing 477/683 atomic regions from SNP 142953 to 143553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,920 DEBUG Processing 309/603 atomic regions from SNP 92417 to 93017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,983 DEBUG Processing 382/668 atomic regions from SNP 114449 to 115049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,028 DEBUG Processing 43/537 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:43,031 DEBUG Processing 341/565 atomic regions from SNP 102211 to 102811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,041 DEBUG Processing 585/724 atomic regions from SNP 175411 to 176011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,123 DEBUG Processing 478/683 atomic regions from SNP 143253 to 143853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,126 DEBUG Processing 310/603 atomic regions from SNP 92717 to 93317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,216 DEBUG Processing 383/668 atomic regions from SNP 114749 to 115349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,225 DEBUG Processing 44/537 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:43,239 DEBUG Processing 342/565 atomic regions from SNP 102511 to 103111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,265 DEBUG Processing 586/724 atomic regions from SNP 175711 to 176311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,329 DEBUG Processing 311/603 atomic regions from SNP 93017 to 93617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,351 DEBUG Processing 479/683 atomic regions from SNP 143553 to 144153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,423 DEBUG Processing 45/537 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:43,437 DEBUG Processing 384/668 atomic regions from SNP 115049 to 115649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,448 DEBUG Processing 343/565 atomic regions from SNP 102811 to 103411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,494 DEBUG Processing 587/724 atomic regions from SNP 176011 to 176611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,534 DEBUG Processing 312/603 atomic regions from SNP 93317 to 93917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,582 DEBUG Processing 480/683 atomic regions from SNP 143853 to 144453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,616 DEBUG Processing 46/537 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:43,649 DEBUG Processing 344/565 atomic regions from SNP 103111 to 103711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,653 DEBUG Processing 385/668 atomic regions from SNP 115349 to 115949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,717 DEBUG Processing 588/724 atomic regions from SNP 176311 to 176911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,741 DEBUG Processing 313/603 atomic regions from SNP 93617 to 94217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,809 DEBUG Processing 47/537 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:43,815 DEBUG Processing 481/683 atomic regions from SNP 144153 to 144753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,857 DEBUG Processing 345/565 atomic regions from SNP 103411 to 104011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,884 DEBUG Processing 386/668 atomic regions from SNP 115649 to 116249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,943 DEBUG Processing 589/724 atomic regions from SNP 176611 to 177211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,952 DEBUG Processing 314/603 atomic regions from SNP 93917 to 94517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,004 DEBUG Processing 48/537 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:44,052 DEBUG Processing 482/683 atomic regions from SNP 144453 to 145053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,067 DEBUG Processing 346/565 atomic regions from SNP 103711 to 104311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,122 DEBUG Processing 387/668 atomic regions from SNP 115949 to 116549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,165 DEBUG Processing 315/603 atomic regions from SNP 94217 to 94817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,196 DEBUG Processing 590/724 atomic regions from SNP 176911 to 177511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,201 DEBUG Processing 49/537 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:44,280 DEBUG Processing 347/565 atomic regions from SNP 104011 to 104611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,288 DEBUG Processing 483/683 atomic regions from SNP 144753 to 145353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,350 DEBUG Processing 388/668 atomic regions from SNP 116249 to 116849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,388 DEBUG Processing 316/603 atomic regions from SNP 94517 to 95117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,401 DEBUG Processing 50/537 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:44,448 DEBUG Processing 591/724 atomic regions from SNP 177211 to 177811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,489 DEBUG Processing 348/565 atomic regions from SNP 104311 to 104911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,531 DEBUG Processing 484/683 atomic regions from SNP 145053 to 145653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,579 DEBUG Processing 389/668 atomic regions from SNP 116549 to 117149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,598 DEBUG Processing 51/537 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:44,606 DEBUG Processing 317/603 atomic regions from SNP 94817 to 95417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,694 DEBUG Processing 349/565 atomic regions from SNP 104611 to 105211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,700 DEBUG Processing 592/724 atomic regions from SNP 177511 to 178111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,777 DEBUG Processing 485/683 atomic regions from SNP 145353 to 145953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,797 DEBUG Processing 52/537 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:44,804 DEBUG Processing 390/668 atomic regions from SNP 116849 to 117449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,827 DEBUG Processing 318/603 atomic regions from SNP 95117 to 95717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,896 DEBUG Processing 350/565 atomic regions from SNP 104911 to 105511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,941 DEBUG Processing 593/724 atomic regions from SNP 177811 to 178411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,996 DEBUG Processing 53/537 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:45,024 DEBUG Processing 486/683 atomic regions from SNP 145653 to 146253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,044 DEBUG Processing 391/668 atomic regions from SNP 117149 to 117749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,052 DEBUG Processing 319/603 atomic regions from SNP 95417 to 96017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,105 DEBUG Processing 351/565 atomic regions from SNP 105211 to 105811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,185 DEBUG Processing 594/724 atomic regions from SNP 178111 to 178711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,194 DEBUG Processing 54/537 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:45,270 DEBUG Processing 487/683 atomic regions from SNP 145953 to 146553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,275 DEBUG Processing 320/603 atomic regions from SNP 95717 to 96317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,276 DEBUG Processing 392/668 atomic regions from SNP 117449 to 118049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,321 DEBUG Processing 352/565 atomic regions from SNP 105511 to 106111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,394 DEBUG Processing 55/537 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:45,441 DEBUG Processing 595/724 atomic regions from SNP 178411 to 179011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,496 DEBUG Processing 321/603 atomic regions from SNP 96017 to 96617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,507 DEBUG Processing 393/668 atomic regions from SNP 117749 to 118349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,520 DEBUG Processing 488/683 atomic regions from SNP 146253 to 146853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,529 DEBUG Processing 353/565 atomic regions from SNP 105811 to 106411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,605 DEBUG Processing 56/537 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:45,702 DEBUG Processing 596/724 atomic regions from SNP 178711 to 179311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,735 DEBUG Processing 354/565 atomic regions from SNP 106111 to 106711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,736 DEBUG Processing 322/603 atomic regions from SNP 96317 to 96917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,744 DEBUG Processing 394/668 atomic regions from SNP 118049 to 118649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,769 DEBUG Processing 489/683 atomic regions from SNP 146553 to 147153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,824 DEBUG Processing 57/537 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:45,935 DEBUG Processing 355/565 atomic regions from SNP 106411 to 107011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,958 DEBUG Processing 597/724 atomic regions from SNP 179011 to 179611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,975 DEBUG Processing 395/668 atomic regions from SNP 118349 to 118949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,983 DEBUG Processing 323/603 atomic regions from SNP 96617 to 97217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,015 DEBUG Processing 490/683 atomic regions from SNP 146853 to 147453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,026 DEBUG Processing 58/537 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:46,129 DEBUG Processing 356/565 atomic regions from SNP 106711 to 107311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,206 DEBUG Processing 396/668 atomic regions from SNP 118649 to 119249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,220 DEBUG Processing 598/724 atomic regions from SNP 179311 to 179911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,229 DEBUG Processing 59/537 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:46,235 DEBUG Processing 324/603 atomic regions from SNP 96917 to 97517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,267 DEBUG Processing 491/683 atomic regions from SNP 147153 to 147753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,332 DEBUG Processing 357/565 atomic regions from SNP 107011 to 107611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,430 DEBUG Processing 60/537 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:46,436 DEBUG Processing 397/668 atomic regions from SNP 118949 to 119549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,477 DEBUG Processing 325/603 atomic regions from SNP 97217 to 97817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,478 DEBUG Processing 599/724 atomic regions from SNP 179611 to 180211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,516 DEBUG Processing 492/683 atomic regions from SNP 147453 to 148053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,534 DEBUG Processing 358/565 atomic regions from SNP 107311 to 107911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,626 DEBUG Processing 61/537 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:46,657 DEBUG Processing 398/668 atomic regions from SNP 119249 to 119849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,704 DEBUG Processing 326/603 atomic regions from SNP 97517 to 98117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,727 DEBUG Processing 600/724 atomic regions from SNP 179911 to 180511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,739 DEBUG Processing 359/565 atomic regions from SNP 107611 to 108211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,761 DEBUG Processing 493/683 atomic regions from SNP 147753 to 148353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,819 DEBUG Processing 62/537 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:46,878 DEBUG Processing 399/668 atomic regions from SNP 119549 to 120149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,940 DEBUG Processing 327/603 atomic regions from SNP 97817 to 98417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,948 DEBUG Processing 360/565 atomic regions from SNP 107911 to 108511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,990 DEBUG Processing 601/724 atomic regions from SNP 180211 to 180811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,008 DEBUG Processing 494/683 atomic regions from SNP 148053 to 148653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,010 DEBUG Processing 63/537 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:47,096 DEBUG Processing 400/668 atomic regions from SNP 119849 to 120449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,159 DEBUG Processing 361/565 atomic regions from SNP 108211 to 108811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,180 DEBUG Processing 328/603 atomic regions from SNP 98117 to 98717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,209 DEBUG Processing 64/537 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:47,252 DEBUG Processing 495/683 atomic regions from SNP 148353 to 148953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,262 DEBUG Processing 602/724 atomic regions from SNP 180511 to 181111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,317 DEBUG Processing 401/668 atomic regions from SNP 120149 to 120749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,371 DEBUG Processing 362/565 atomic regions from SNP 108511 to 109111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,412 DEBUG Processing 65/537 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:47,428 DEBUG Processing 329/603 atomic regions from SNP 98417 to 99017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,503 DEBUG Processing 496/683 atomic regions from SNP 148653 to 149253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,545 DEBUG Processing 603/724 atomic regions from SNP 180811 to 181411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,548 DEBUG Processing 402/668 atomic regions from SNP 120449 to 121049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,583 DEBUG Processing 363/565 atomic regions from SNP 108811 to 109411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,623 DEBUG Processing 66/537 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:47,679 DEBUG Processing 330/603 atomic regions from SNP 98717 to 99317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,752 DEBUG Processing 497/683 atomic regions from SNP 148953 to 149553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,776 DEBUG Processing 403/668 atomic regions from SNP 120749 to 121349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,787 DEBUG Processing 364/565 atomic regions from SNP 109111 to 109711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,808 DEBUG Processing 604/724 atomic regions from SNP 181111 to 181711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,832 DEBUG Processing 67/537 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:47,923 DEBUG Processing 331/603 atomic regions from SNP 99017 to 99617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,997 DEBUG Processing 365/565 atomic regions from SNP 109411 to 110011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,998 DEBUG Processing 498/683 atomic regions from SNP 149253 to 149853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,018 DEBUG Processing 404/668 atomic regions from SNP 121049 to 121649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,039 DEBUG Processing 68/537 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:48,056 DEBUG Processing 605/724 atomic regions from SNP 181411 to 182011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,159 DEBUG Processing 332/603 atomic regions from SNP 99317 to 99917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,205 DEBUG Processing 366/565 atomic regions from SNP 109711 to 110311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,231 DEBUG Processing 499/683 atomic regions from SNP 149553 to 150153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,244 DEBUG Processing 69/537 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:48,253 DEBUG Processing 405/668 atomic regions from SNP 121349 to 121949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,297 DEBUG Processing 606/724 atomic regions from SNP 181711 to 182311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,376 DEBUG Processing 333/603 atomic regions from SNP 99617 to 100217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,401 DEBUG Processing 367/565 atomic regions from SNP 110011 to 110611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,438 DEBUG Processing 70/537 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:48,464 DEBUG Processing 500/683 atomic regions from SNP 149853 to 150453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,474 DEBUG Processing 406/668 atomic regions from SNP 121649 to 122249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,561 DEBUG Processing 607/724 atomic regions from SNP 182011 to 182611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,599 DEBUG Processing 334/603 atomic regions from SNP 99917 to 100517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,599 DEBUG Processing 368/565 atomic regions from SNP 110311 to 110911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,630 DEBUG Processing 71/537 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:48,698 DEBUG Processing 501/683 atomic regions from SNP 150153 to 150753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,698 DEBUG Processing 407/668 atomic regions from SNP 121949 to 122549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,800 DEBUG Processing 369/565 atomic regions from SNP 110611 to 111211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,819 DEBUG Processing 335/603 atomic regions from SNP 100217 to 100817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,827 DEBUG Processing 72/537 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:48,828 DEBUG Processing 608/724 atomic regions from SNP 182311 to 182911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,931 DEBUG Processing 502/683 atomic regions from SNP 150453 to 151053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,941 DEBUG Processing 408/668 atomic regions from SNP 122249 to 122849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,004 DEBUG Processing 370/565 atomic regions from SNP 110911 to 111511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,028 DEBUG Processing 73/537 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:49,039 DEBUG Processing 336/603 atomic regions from SNP 100517 to 101117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,080 DEBUG Processing 609/724 atomic regions from SNP 182611 to 183211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,165 DEBUG Processing 503/683 atomic regions from SNP 150753 to 151353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,187 DEBUG Processing 409/668 atomic regions from SNP 122549 to 123149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,204 DEBUG Processing 371/565 atomic regions from SNP 111211 to 111811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,228 DEBUG Processing 74/537 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:49,257 DEBUG Processing 337/603 atomic regions from SNP 100817 to 101417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,316 DEBUG Processing 610/724 atomic regions from SNP 182911 to 183511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,402 DEBUG Processing 504/683 atomic regions from SNP 151053 to 151653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,407 DEBUG Processing 372/565 atomic regions from SNP 111511 to 112111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,431 DEBUG Processing 75/537 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:49,437 DEBUG Processing 410/668 atomic regions from SNP 122849 to 123449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,470 DEBUG Processing 338/603 atomic regions from SNP 101117 to 101717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,544 DEBUG Processing 611/724 atomic regions from SNP 183211 to 183811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,611 DEBUG Processing 373/565 atomic regions from SNP 111811 to 112411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,629 DEBUG Processing 76/537 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:49,638 DEBUG Processing 505/683 atomic regions from SNP 151353 to 151953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,686 DEBUG Processing 339/603 atomic regions from SNP 101417 to 102017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,694 DEBUG Processing 411/668 atomic regions from SNP 123149 to 123749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,787 DEBUG Processing 612/724 atomic regions from SNP 183511 to 184111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,816 DEBUG Processing 374/565 atomic regions from SNP 112111 to 112711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,829 DEBUG Processing 77/537 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:49,877 DEBUG Processing 506/683 atomic regions from SNP 151653 to 152253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,903 DEBUG Processing 340/603 atomic regions from SNP 101717 to 102317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,945 DEBUG Processing 412/668 atomic regions from SNP 123449 to 124049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,019 DEBUG Processing 375/565 atomic regions from SNP 112411 to 113011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,021 DEBUG Processing 613/724 atomic regions from SNP 183811 to 184411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,024 DEBUG Processing 78/537 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:50,112 DEBUG Processing 507/683 atomic regions from SNP 151953 to 152553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,115 DEBUG Processing 341/603 atomic regions from SNP 102017 to 102617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,184 DEBUG Processing 413/668 atomic regions from SNP 123749 to 124349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,224 DEBUG Processing 79/537 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:50,226 DEBUG Processing 376/565 atomic regions from SNP 112711 to 113311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,261 DEBUG Processing 614/724 atomic regions from SNP 184111 to 184711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,329 DEBUG Processing 342/603 atomic regions from SNP 102317 to 102917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,345 DEBUG Processing 508/683 atomic regions from SNP 152253 to 152853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,407 DEBUG Processing 414/668 atomic regions from SNP 124049 to 124649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,425 DEBUG Processing 80/537 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:50,437 DEBUG Processing 377/565 atomic regions from SNP 113011 to 113611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,503 DEBUG Processing 615/724 atomic regions from SNP 184411 to 185011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,547 DEBUG Processing 343/603 atomic regions from SNP 102617 to 103217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,592 DEBUG Processing 509/683 atomic regions from SNP 152553 to 153153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,622 DEBUG Processing 81/537 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:50,628 DEBUG Processing 415/668 atomic regions from SNP 124349 to 124949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,641 DEBUG Processing 378/565 atomic regions from SNP 113311 to 113911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,736 DEBUG Processing 616/724 atomic regions from SNP 184711 to 185311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,770 DEBUG Processing 344/603 atomic regions from SNP 102917 to 103517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,825 DEBUG Processing 82/537 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:50,839 DEBUG Processing 510/683 atomic regions from SNP 152853 to 153453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,855 DEBUG Processing 379/565 atomic regions from SNP 113611 to 114211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,861 DEBUG Processing 416/668 atomic regions from SNP 124649 to 125249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,967 DEBUG Processing 617/724 atomic regions from SNP 185011 to 185611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,990 DEBUG Processing 345/603 atomic regions from SNP 103217 to 103817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,021 DEBUG Processing 83/537 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:51,052 DEBUG Processing 380/565 atomic regions from SNP 113911 to 114511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,078 DEBUG Processing 511/683 atomic regions from SNP 153153 to 153753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,082 DEBUG Processing 417/668 atomic regions from SNP 124949 to 125549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,193 DEBUG Processing 618/724 atomic regions from SNP 185311 to 185911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,204 DEBUG Processing 346/603 atomic regions from SNP 103517 to 104117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,220 DEBUG Processing 84/537 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:51,258 DEBUG Processing 381/565 atomic regions from SNP 114211 to 114811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,309 DEBUG Processing 418/668 atomic regions from SNP 125249 to 125849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,331 DEBUG Processing 512/683 atomic regions from SNP 153453 to 154053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,417 DEBUG Processing 85/537 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:51,419 DEBUG Processing 347/603 atomic regions from SNP 103817 to 104417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,426 DEBUG Processing 619/724 atomic regions from SNP 185611 to 186211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,459 DEBUG Processing 382/565 atomic regions from SNP 114511 to 115111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,531 DEBUG Processing 419/668 atomic regions from SNP 125549 to 126149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,569 DEBUG Processing 513/683 atomic regions from SNP 153753 to 154353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,620 DEBUG Processing 86/537 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:51,640 DEBUG Processing 348/603 atomic regions from SNP 104117 to 104717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,655 DEBUG Processing 620/724 atomic regions from SNP 185911 to 186511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,659 DEBUG Processing 383/565 atomic regions from SNP 114811 to 115411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,754 DEBUG Processing 420/668 atomic regions from SNP 125849 to 126449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,807 DEBUG Processing 514/683 atomic regions from SNP 154053 to 154653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,827 DEBUG Processing 87/537 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:51,863 DEBUG Processing 384/565 atomic regions from SNP 115111 to 115711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,871 DEBUG Processing 349/603 atomic regions from SNP 104417 to 105017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,891 DEBUG Processing 621/724 atomic regions from SNP 186211 to 186811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,979 DEBUG Processing 421/668 atomic regions from SNP 126149 to 126749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,039 DEBUG Processing 88/537 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:52,044 DEBUG Processing 515/683 atomic regions from SNP 154353 to 154953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,072 DEBUG Processing 385/565 atomic regions from SNP 115411 to 116011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,084 DEBUG Processing 350/603 atomic regions from SNP 104717 to 105317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,143 DEBUG Processing 622/724 atomic regions from SNP 186511 to 187111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,201 DEBUG Processing 422/668 atomic regions from SNP 126449 to 127049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,246 DEBUG Processing 89/537 atomic regions from SNP 26488 to 27089 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:52,277 DEBUG Processing 516/683 atomic regions from SNP 154653 to 155253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,288 DEBUG Processing 386/565 atomic regions from SNP 115711 to 116311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,300 DEBUG Processing 351/603 atomic regions from SNP 105017 to 105617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,377 DEBUG Processing 623/724 atomic regions from SNP 186811 to 187411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,427 DEBUG Processing 423/668 atomic regions from SNP 126749 to 127349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,447 DEBUG Processing 90/537 atomic regions from SNP 26789 to 27390 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:52,497 DEBUG Processing 387/565 atomic regions from SNP 116011 to 116611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,517 DEBUG Processing 517/683 atomic regions from SNP 154953 to 155553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,519 DEBUG Processing 352/603 atomic regions from SNP 105317 to 105917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,610 DEBUG Processing 624/724 atomic regions from SNP 187111 to 187711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,648 DEBUG Processing 91/537 atomic regions from SNP 27090 to 27691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:52,665 DEBUG Processing 424/668 atomic regions from SNP 127049 to 127649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,703 DEBUG Processing 388/565 atomic regions from SNP 116311 to 116911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,733 DEBUG Processing 353/603 atomic regions from SNP 105617 to 106217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,765 DEBUG Processing 518/683 atomic regions from SNP 155253 to 155853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,837 DEBUG Processing 625/724 atomic regions from SNP 187411 to 188011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,847 DEBUG Processing 92/537 atomic regions from SNP 27391 to 27992 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:52,907 DEBUG Processing 425/668 atomic regions from SNP 127349 to 127949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,912 DEBUG Processing 389/565 atomic regions from SNP 116611 to 117211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,952 DEBUG Processing 354/603 atomic regions from SNP 105917 to 106517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,022 DEBUG Processing 519/683 atomic regions from SNP 155553 to 156153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,052 DEBUG Processing 93/537 atomic regions from SNP 27692 to 28293 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:53,089 DEBUG Processing 626/724 atomic regions from SNP 187711 to 188311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,123 DEBUG Processing 390/565 atomic regions from SNP 116911 to 117511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,150 DEBUG Processing 426/668 atomic regions from SNP 127649 to 128249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,172 DEBUG Processing 355/603 atomic regions from SNP 106217 to 106817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,251 DEBUG Processing 94/537 atomic regions from SNP 27993 to 28594 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:53,274 DEBUG Processing 520/683 atomic regions from SNP 155853 to 156453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,332 DEBUG Processing 391/565 atomic regions from SNP 117211 to 117811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,339 DEBUG Processing 627/724 atomic regions from SNP 188011 to 188611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,375 DEBUG Processing 427/668 atomic regions from SNP 127949 to 128549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,385 DEBUG Processing 356/603 atomic regions from SNP 106517 to 107117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,450 DEBUG Processing 95/537 atomic regions from SNP 28294 to 28895 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:53,508 DEBUG Processing 521/683 atomic regions from SNP 156153 to 156753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,536 DEBUG Processing 392/565 atomic regions from SNP 117511 to 118111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,595 DEBUG Processing 628/724 atomic regions from SNP 188311 to 188911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,605 DEBUG Processing 357/603 atomic regions from SNP 106817 to 107417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,606 DEBUG Processing 428/668 atomic regions from SNP 128249 to 128849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,657 DEBUG Processing 96/537 atomic regions from SNP 28595 to 29196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:53,734 DEBUG Processing 522/683 atomic regions from SNP 156453 to 157053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,737 DEBUG Processing 393/565 atomic regions from SNP 117811 to 118411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,828 DEBUG Processing 358/603 atomic regions from SNP 107117 to 107717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,837 DEBUG Processing 429/668 atomic regions from SNP 128549 to 129149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,853 DEBUG Processing 629/724 atomic regions from SNP 188611 to 189211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,862 DEBUG Processing 97/537 atomic regions from SNP 28896 to 29497 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:53,937 DEBUG Processing 394/565 atomic regions from SNP 118111 to 118711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,957 DEBUG Processing 523/683 atomic regions from SNP 156753 to 157353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,043 DEBUG Processing 359/603 atomic regions from SNP 107417 to 108017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,062 DEBUG Processing 98/537 atomic regions from SNP 29197 to 29798 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:54,070 DEBUG Processing 430/668 atomic regions from SNP 128849 to 129449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,101 DEBUG Processing 630/724 atomic regions from SNP 188911 to 189511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,140 DEBUG Processing 395/565 atomic regions from SNP 118411 to 119011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,197 DEBUG Processing 524/683 atomic regions from SNP 157053 to 157653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,255 DEBUG Processing 99/537 atomic regions from SNP 29498 to 30099 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:54,275 DEBUG Processing 360/603 atomic regions from SNP 107717 to 108317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,318 DEBUG Processing 431/668 atomic regions from SNP 129149 to 129749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,345 DEBUG Processing 396/565 atomic regions from SNP 118711 to 119311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,355 DEBUG Processing 631/724 atomic regions from SNP 189211 to 189811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,436 DEBUG Processing 525/683 atomic regions from SNP 157353 to 157953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,448 DEBUG Processing 100/537 atomic regions from SNP 29799 to 30400 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:54,497 DEBUG Processing 361/603 atomic regions from SNP 108017 to 108617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,556 DEBUG Processing 397/565 atomic regions from SNP 119011 to 119611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,575 DEBUG Processing 432/668 atomic regions from SNP 129449 to 130049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,615 DEBUG Processing 632/724 atomic regions from SNP 189511 to 190111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,645 DEBUG Processing 101/537 atomic regions from SNP 30100 to 30701 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:54,667 DEBUG Processing 526/683 atomic regions from SNP 157653 to 158253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,723 DEBUG Processing 362/603 atomic regions from SNP 108317 to 108917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,760 DEBUG Processing 398/565 atomic regions from SNP 119311 to 119911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,818 DEBUG Processing 433/668 atomic regions from SNP 129749 to 130349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,843 DEBUG Processing 102/537 atomic regions from SNP 30401 to 31002 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:54,867 DEBUG Processing 633/724 atomic regions from SNP 189811 to 190411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,903 DEBUG Processing 527/683 atomic regions from SNP 157953 to 158553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,938 DEBUG Processing 363/603 atomic regions from SNP 108617 to 109217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,965 DEBUG Processing 399/565 atomic regions from SNP 119611 to 120211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,039 DEBUG Processing 103/537 atomic regions from SNP 30702 to 31303 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:55,063 DEBUG Processing 434/668 atomic regions from SNP 130049 to 130649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,103 DEBUG Processing 634/724 atomic regions from SNP 190111 to 190711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,138 DEBUG Processing 528/683 atomic regions from SNP 158253 to 158853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,151 DEBUG Processing 364/603 atomic regions from SNP 108917 to 109517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,162 DEBUG Processing 400/565 atomic regions from SNP 119911 to 120511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,233 DEBUG Processing 104/537 atomic regions from SNP 31003 to 31604 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:55,314 DEBUG Processing 435/668 atomic regions from SNP 130349 to 130949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,354 DEBUG Processing 635/724 atomic regions from SNP 190411 to 191011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,365 DEBUG Processing 401/565 atomic regions from SNP 120211 to 120811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,371 DEBUG Processing 365/603 atomic regions from SNP 109217 to 109817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,379 DEBUG Processing 529/683 atomic regions from SNP 158553 to 159153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,429 DEBUG Processing 105/537 atomic regions from SNP 31304 to 31905 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:55,558 DEBUG Processing 436/668 atomic regions from SNP 130649 to 131249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,567 DEBUG Processing 402/565 atomic regions from SNP 120511 to 121111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,590 DEBUG Processing 636/724 atomic regions from SNP 190711 to 191311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,591 DEBUG Processing 366/603 atomic regions from SNP 109517 to 110117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,623 DEBUG Processing 530/683 atomic regions from SNP 158853 to 159453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,632 DEBUG Processing 106/537 atomic regions from SNP 31605 to 32206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:55,767 DEBUG Processing 403/565 atomic regions from SNP 120811 to 121411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,800 DEBUG Processing 437/668 atomic regions from SNP 130949 to 131549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,811 DEBUG Processing 367/603 atomic regions from SNP 109817 to 110417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,824 DEBUG Processing 637/724 atomic regions from SNP 191011 to 191611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,832 DEBUG Processing 107/537 atomic regions from SNP 31906 to 32507 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:55,864 DEBUG Processing 531/683 atomic regions from SNP 159153 to 159753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,969 DEBUG Processing 404/565 atomic regions from SNP 121111 to 121711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,037 DEBUG Processing 368/603 atomic regions from SNP 110117 to 110717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,039 DEBUG Processing 108/537 atomic regions from SNP 32207 to 32808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:56,050 DEBUG Processing 438/668 atomic regions from SNP 131249 to 131849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,066 DEBUG Processing 638/724 atomic regions from SNP 191311 to 191911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,112 DEBUG Processing 532/683 atomic regions from SNP 159453 to 160053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,177 DEBUG Processing 405/565 atomic regions from SNP 121411 to 122011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,251 DEBUG Processing 109/537 atomic regions from SNP 32508 to 33109 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:56,255 DEBUG Processing 369/603 atomic regions from SNP 110417 to 111017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,291 DEBUG Processing 439/668 atomic regions from SNP 131549 to 132149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,303 DEBUG Processing 639/724 atomic regions from SNP 191611 to 192211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,362 DEBUG Processing 533/683 atomic regions from SNP 159753 to 160353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,380 DEBUG Processing 406/565 atomic regions from SNP 121711 to 122311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,445 DEBUG Processing 110/537 atomic regions from SNP 32809 to 33410 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:56,467 DEBUG Processing 370/603 atomic regions from SNP 110717 to 111317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,510 DEBUG Processing 440/668 atomic regions from SNP 131849 to 132449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,540 DEBUG Processing 640/724 atomic regions from SNP 191911 to 192511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,581 DEBUG Processing 407/565 atomic regions from SNP 122011 to 122611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,596 DEBUG Processing 534/683 atomic regions from SNP 160053 to 160653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,651 DEBUG Processing 111/537 atomic regions from SNP 33110 to 33711 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:56,681 DEBUG Processing 371/603 atomic regions from SNP 111017 to 111617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,737 DEBUG Processing 441/668 atomic regions from SNP 132149 to 132749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,778 DEBUG Processing 641/724 atomic regions from SNP 192211 to 192811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,788 DEBUG Processing 408/565 atomic regions from SNP 122311 to 122911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,830 DEBUG Processing 535/683 atomic regions from SNP 160353 to 160953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,877 DEBUG Processing 112/537 atomic regions from SNP 33411 to 34012 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:56,894 DEBUG Processing 372/603 atomic regions from SNP 111317 to 111917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,968 DEBUG Processing 442/668 atomic regions from SNP 132449 to 133049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,994 DEBUG Processing 409/565 atomic regions from SNP 122611 to 123211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,008 DEBUG Processing 642/724 atomic regions from SNP 192511 to 193111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,071 DEBUG Processing 536/683 atomic regions from SNP 160653 to 161253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,094 DEBUG Processing 113/537 atomic regions from SNP 33712 to 34313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:57,108 DEBUG Processing 373/603 atomic regions from SNP 111617 to 112217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,185 DEBUG Processing 443/668 atomic regions from SNP 132749 to 133349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,193 DEBUG Processing 410/565 atomic regions from SNP 122911 to 123511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,234 DEBUG Processing 643/724 atomic regions from SNP 192811 to 193411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,299 DEBUG Processing 114/537 atomic regions from SNP 34013 to 34614 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:57,313 DEBUG Processing 537/683 atomic regions from SNP 160953 to 161553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,320 DEBUG Processing 374/603 atomic regions from SNP 111917 to 112517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,393 DEBUG Processing 411/565 atomic regions from SNP 123211 to 123811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,410 DEBUG Processing 444/668 atomic regions from SNP 133049 to 133649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,462 DEBUG Processing 644/724 atomic regions from SNP 193111 to 193711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,518 DEBUG Processing 115/537 atomic regions from SNP 34314 to 34915 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:57,537 DEBUG Processing 375/603 atomic regions from SNP 112217 to 112817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,569 DEBUG Processing 538/683 atomic regions from SNP 161253 to 161853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,591 DEBUG Processing 412/565 atomic regions from SNP 123511 to 124111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,632 DEBUG Processing 445/668 atomic regions from SNP 133349 to 133949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,686 DEBUG Processing 645/724 atomic regions from SNP 193411 to 194011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,732 DEBUG Processing 116/537 atomic regions from SNP 34615 to 35216 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:57,774 DEBUG Processing 376/603 atomic regions from SNP 112517 to 113117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,790 DEBUG Processing 413/565 atomic regions from SNP 123811 to 124411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,813 DEBUG Processing 539/683 atomic regions from SNP 161553 to 162153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,855 DEBUG Processing 446/668 atomic regions from SNP 133649 to 134249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,914 DEBUG Processing 646/724 atomic regions from SNP 193711 to 194311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,958 DEBUG Processing 117/537 atomic regions from SNP 34916 to 35517 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:57,988 DEBUG Processing 414/565 atomic regions from SNP 124111 to 124711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,009 DEBUG Processing 377/603 atomic regions from SNP 112817 to 113417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,053 DEBUG Processing 540/683 atomic regions from SNP 161853 to 162453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,084 DEBUG Processing 447/668 atomic regions from SNP 133949 to 134549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,156 DEBUG Processing 647/724 atomic regions from SNP 194011 to 194611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,183 DEBUG Processing 415/565 atomic regions from SNP 124411 to 125011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,187 DEBUG Processing 118/537 atomic regions from SNP 35217 to 35818 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:58,246 DEBUG Processing 378/603 atomic regions from SNP 113117 to 113717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,289 DEBUG Processing 541/683 atomic regions from SNP 162153 to 162753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,315 DEBUG Processing 448/668 atomic regions from SNP 134249 to 134849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,388 DEBUG Processing 416/565 atomic regions from SNP 124711 to 125311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,409 DEBUG Processing 648/724 atomic regions from SNP 194311 to 194911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,412 DEBUG Processing 119/537 atomic regions from SNP 35518 to 36119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:58,475 DEBUG Processing 379/603 atomic regions from SNP 113417 to 114017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,526 DEBUG Processing 542/683 atomic regions from SNP 162453 to 163053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,542 DEBUG Processing 449/668 atomic regions from SNP 134549 to 135149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,590 DEBUG Processing 417/565 atomic regions from SNP 125011 to 125611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,633 DEBUG Processing 120/537 atomic regions from SNP 35819 to 36420 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:58,651 DEBUG Processing 649/724 atomic regions from SNP 194611 to 195211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,686 DEBUG Processing 380/603 atomic regions from SNP 113717 to 114317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,765 DEBUG Processing 543/683 atomic regions from SNP 162753 to 163353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,788 DEBUG Processing 450/668 atomic regions from SNP 134849 to 135449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,789 DEBUG Processing 418/565 atomic regions from SNP 125311 to 125911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,846 DEBUG Processing 121/537 atomic regions from SNP 36120 to 36721 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:58,876 DEBUG Processing 650/724 atomic regions from SNP 194911 to 195511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,897 DEBUG Processing 381/603 atomic regions from SNP 114017 to 114617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,993 DEBUG Processing 419/565 atomic regions from SNP 125611 to 126211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,001 DEBUG Processing 544/683 atomic regions from SNP 163053 to 163653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,032 DEBUG Processing 451/668 atomic regions from SNP 135149 to 135749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,066 DEBUG Processing 122/537 atomic regions from SNP 36421 to 37022 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:59,109 DEBUG Processing 651/724 atomic regions from SNP 195211 to 195811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,117 DEBUG Processing 382/603 atomic regions from SNP 114317 to 114917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,196 DEBUG Processing 420/565 atomic regions from SNP 125911 to 126511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,239 DEBUG Processing 545/683 atomic regions from SNP 163353 to 163953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,282 DEBUG Processing 452/668 atomic regions from SNP 135449 to 136049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,292 DEBUG Processing 123/537 atomic regions from SNP 36722 to 37323 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:59,338 DEBUG Processing 383/603 atomic regions from SNP 114617 to 115217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,347 DEBUG Processing 652/724 atomic regions from SNP 195511 to 196111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,398 DEBUG Processing 421/565 atomic regions from SNP 126211 to 126811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,488 DEBUG Processing 546/683 atomic regions from SNP 163653 to 164253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,517 DEBUG Processing 124/537 atomic regions from SNP 37023 to 37624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:59,534 DEBUG Processing 453/668 atomic regions from SNP 135749 to 136349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,548 DEBUG Processing 384/603 atomic regions from SNP 114917 to 115517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,575 DEBUG Processing 653/724 atomic regions from SNP 195811 to 196411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,602 DEBUG Processing 422/565 atomic regions from SNP 126511 to 127111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,741 DEBUG Processing 125/537 atomic regions from SNP 37324 to 37925 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:59,752 DEBUG Processing 547/683 atomic regions from SNP 163953 to 164553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,766 DEBUG Processing 385/603 atomic regions from SNP 115217 to 115817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,772 DEBUG Processing 454/668 atomic regions from SNP 136049 to 136649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,802 DEBUG Processing 423/565 atomic regions from SNP 126811 to 127411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,806 DEBUG Processing 654/724 atomic regions from SNP 196111 to 196711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,976 DEBUG Processing 126/537 atomic regions from SNP 37625 to 38226 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:59,984 DEBUG Processing 386/603 atomic regions from SNP 115517 to 116117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,007 DEBUG Processing 424/565 atomic regions from SNP 127111 to 127711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,010 DEBUG Processing 455/668 atomic regions from SNP 136349 to 136949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,022 DEBUG Processing 548/683 atomic regions from SNP 164253 to 164853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,041 DEBUG Processing 655/724 atomic regions from SNP 196411 to 197011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,201 DEBUG Processing 387/603 atomic regions from SNP 115817 to 116417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,203 DEBUG Processing 127/537 atomic regions from SNP 37926 to 38527 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:00,207 DEBUG Processing 425/565 atomic regions from SNP 127411 to 128011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,247 DEBUG Processing 456/668 atomic regions from SNP 136649 to 137249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,277 DEBUG Processing 656/724 atomic regions from SNP 196711 to 197311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,278 DEBUG Processing 549/683 atomic regions from SNP 164553 to 165153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,409 DEBUG Processing 426/565 atomic regions from SNP 127711 to 128311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,418 DEBUG Processing 388/603 atomic regions from SNP 116117 to 116717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,431 DEBUG Processing 128/537 atomic regions from SNP 38227 to 38828 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:00,502 DEBUG Processing 457/668 atomic regions from SNP 136949 to 137549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,513 DEBUG Processing 657/724 atomic regions from SNP 197011 to 197611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,527 DEBUG Processing 550/683 atomic regions from SNP 164853 to 165453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,608 DEBUG Processing 427/565 atomic regions from SNP 128011 to 128611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,630 DEBUG Processing 389/603 atomic regions from SNP 116417 to 117017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,648 DEBUG Processing 129/537 atomic regions from SNP 38528 to 39129 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:00,749 DEBUG Processing 658/724 atomic regions from SNP 197311 to 197911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,752 DEBUG Processing 458/668 atomic regions from SNP 137249 to 137849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,772 DEBUG Processing 551/683 atomic regions from SNP 165153 to 165753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,808 DEBUG Processing 428/565 atomic regions from SNP 128311 to 128911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,837 DEBUG Processing 390/603 atomic regions from SNP 116717 to 117317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,864 DEBUG Processing 130/537 atomic regions from SNP 38829 to 39430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:00,980 DEBUG Processing 659/724 atomic regions from SNP 197611 to 198211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,980 DEBUG Processing 459/668 atomic regions from SNP 137549 to 138149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,007 DEBUG Processing 552/683 atomic regions from SNP 165453 to 166053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,007 DEBUG Processing 429/565 atomic regions from SNP 128611 to 129211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,045 DEBUG Processing 391/603 atomic regions from SNP 117017 to 117617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,073 DEBUG Processing 131/537 atomic regions from SNP 39130 to 39731 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:01,205 DEBUG Processing 430/565 atomic regions from SNP 128911 to 129511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,215 DEBUG Processing 660/724 atomic regions from SNP 197911 to 198511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,224 DEBUG Processing 460/668 atomic regions from SNP 137849 to 138449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,265 DEBUG Processing 392/603 atomic regions from SNP 117317 to 117917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,266 DEBUG Processing 553/683 atomic regions from SNP 165753 to 166353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,284 DEBUG Processing 132/537 atomic regions from SNP 39431 to 40032 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:01,396 DEBUG Processing 431/565 atomic regions from SNP 129211 to 129811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,446 DEBUG Processing 661/724 atomic regions from SNP 198211 to 198811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,475 DEBUG Processing 461/668 atomic regions from SNP 138149 to 138749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,487 DEBUG Processing 393/603 atomic regions from SNP 117617 to 118217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,513 DEBUG Processing 133/537 atomic regions from SNP 39732 to 40333 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:01,526 DEBUG Processing 554/683 atomic regions from SNP 166053 to 166653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,588 DEBUG Processing 432/565 atomic regions from SNP 129511 to 130111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,672 DEBUG Processing 662/724 atomic regions from SNP 198511 to 199111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,708 DEBUG Processing 394/603 atomic regions from SNP 117917 to 118517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,725 DEBUG Processing 462/668 atomic regions from SNP 138449 to 139049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,741 DEBUG Processing 134/537 atomic regions from SNP 40033 to 40634 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:01,781 DEBUG Processing 555/683 atomic regions from SNP 166353 to 166953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,785 DEBUG Processing 433/565 atomic regions from SNP 129811 to 130411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,904 DEBUG Processing 663/724 atomic regions from SNP 198811 to 199411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,924 DEBUG Processing 395/603 atomic regions from SNP 118217 to 118817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,957 DEBUG Processing 135/537 atomic regions from SNP 40334 to 40935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:01,970 DEBUG Processing 463/668 atomic regions from SNP 138749 to 139349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,983 DEBUG Processing 434/565 atomic regions from SNP 130111 to 130711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,033 DEBUG Processing 556/683 atomic regions from SNP 166653 to 167253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,131 DEBUG Processing 664/724 atomic regions from SNP 199111 to 199711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,137 DEBUG Processing 396/603 atomic regions from SNP 118517 to 119117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,172 DEBUG Processing 136/537 atomic regions from SNP 40635 to 41236 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:02,176 DEBUG Processing 435/565 atomic regions from SNP 130411 to 131011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,217 DEBUG Processing 464/668 atomic regions from SNP 139049 to 139649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,282 DEBUG Processing 557/683 atomic regions from SNP 166953 to 167553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,350 DEBUG Processing 397/603 atomic regions from SNP 118817 to 119417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,362 DEBUG Processing 665/724 atomic regions from SNP 199411 to 200011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,368 DEBUG Processing 436/565 atomic regions from SNP 130711 to 131311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,393 DEBUG Processing 137/537 atomic regions from SNP 40936 to 41537 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:02,465 DEBUG Processing 465/668 atomic regions from SNP 139349 to 139949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,541 DEBUG Processing 558/683 atomic regions from SNP 167253 to 167853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,567 DEBUG Processing 398/603 atomic regions from SNP 119117 to 119717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,568 DEBUG Processing 437/565 atomic regions from SNP 131011 to 131611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,598 DEBUG Processing 666/724 atomic regions from SNP 199711 to 200311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,616 DEBUG Processing 138/537 atomic regions from SNP 41237 to 41838 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:02,706 DEBUG Processing 466/668 atomic regions from SNP 139649 to 140249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,772 DEBUG Processing 438/565 atomic regions from SNP 131311 to 131911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,790 DEBUG Processing 399/603 atomic regions from SNP 119417 to 120017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,802 DEBUG Processing 559/683 atomic regions from SNP 167553 to 168153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,831 DEBUG Processing 667/724 atomic regions from SNP 200011 to 200611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,833 DEBUG Processing 139/537 atomic regions from SNP 41538 to 42139 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:02,939 DEBUG Processing 467/668 atomic regions from SNP 139949 to 140549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,974 DEBUG Processing 439/565 atomic regions from SNP 131611 to 132211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,011 DEBUG Processing 400/603 atomic regions from SNP 119717 to 120317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,053 DEBUG Processing 140/537 atomic regions from SNP 41839 to 42440 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:03,054 DEBUG Processing 560/683 atomic regions from SNP 167853 to 168453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,057 DEBUG Processing 668/724 atomic regions from SNP 200311 to 200911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,169 DEBUG Processing 468/668 atomic regions from SNP 140249 to 140849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,171 DEBUG Processing 440/565 atomic regions from SNP 131911 to 132511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,225 DEBUG Processing 401/603 atomic regions from SNP 120017 to 120617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,277 DEBUG Processing 141/537 atomic regions from SNP 42140 to 42741 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:03,283 DEBUG Processing 669/724 atomic regions from SNP 200611 to 201211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,294 DEBUG Processing 561/683 atomic regions from SNP 168153 to 168753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,364 DEBUG Processing 441/565 atomic regions from SNP 132211 to 132811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,410 DEBUG Processing 469/668 atomic regions from SNP 140549 to 141149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,443 DEBUG Processing 402/603 atomic regions from SNP 120317 to 120917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,490 DEBUG Processing 142/537 atomic regions from SNP 42441 to 43042 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:03,511 DEBUG Processing 670/724 atomic regions from SNP 200911 to 201511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,524 DEBUG Processing 562/683 atomic regions from SNP 168453 to 169053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,564 DEBUG Processing 442/565 atomic regions from SNP 132511 to 133111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,653 DEBUG Processing 470/668 atomic regions from SNP 140849 to 141449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,666 DEBUG Processing 403/603 atomic regions from SNP 120617 to 121217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,705 DEBUG Processing 143/537 atomic regions from SNP 42742 to 43343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:03,743 DEBUG Processing 671/724 atomic regions from SNP 201211 to 201811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,757 DEBUG Processing 563/683 atomic regions from SNP 168753 to 169353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,761 DEBUG Processing 443/565 atomic regions from SNP 132811 to 133411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,885 DEBUG Processing 404/603 atomic regions from SNP 120917 to 121517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,889 DEBUG Processing 471/668 atomic regions from SNP 141149 to 141749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,920 DEBUG Processing 144/537 atomic regions from SNP 43043 to 43644 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:03,956 DEBUG Processing 444/565 atomic regions from SNP 133111 to 133711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,972 DEBUG Processing 672/724 atomic regions from SNP 201511 to 202111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,986 DEBUG Processing 564/683 atomic regions from SNP 169053 to 169653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,100 DEBUG Processing 405/603 atomic regions from SNP 121217 to 121817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,126 DEBUG Processing 472/668 atomic regions from SNP 141449 to 142049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,145 DEBUG Processing 145/537 atomic regions from SNP 43344 to 43945 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:04,151 DEBUG Processing 445/565 atomic regions from SNP 133411 to 134011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,197 DEBUG Processing 673/724 atomic regions from SNP 201811 to 202411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,212 DEBUG Processing 565/683 atomic regions from SNP 169353 to 169953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,314 DEBUG Processing 406/603 atomic regions from SNP 121517 to 122117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,356 DEBUG Processing 446/565 atomic regions from SNP 133711 to 134311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,371 DEBUG Processing 146/537 atomic regions from SNP 43645 to 44246 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:04,375 DEBUG Processing 473/668 atomic regions from SNP 141749 to 142349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,429 DEBUG Processing 674/724 atomic regions from SNP 202111 to 202711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,449 DEBUG Processing 566/683 atomic regions from SNP 169653 to 170253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,524 DEBUG Processing 407/603 atomic regions from SNP 121817 to 122417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,554 DEBUG Processing 447/565 atomic regions from SNP 134011 to 134611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,589 DEBUG Processing 147/537 atomic regions from SNP 43946 to 44547 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:04,636 DEBUG Processing 474/668 atomic regions from SNP 142049 to 142649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,660 DEBUG Processing 675/724 atomic regions from SNP 202411 to 203011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,680 DEBUG Processing 567/683 atomic regions from SNP 169953 to 170553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,735 DEBUG Processing 408/603 atomic regions from SNP 122117 to 122717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,754 DEBUG Processing 448/565 atomic regions from SNP 134311 to 134911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,815 DEBUG Processing 148/537 atomic regions from SNP 44247 to 44848 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:04,899 DEBUG Processing 676/724 atomic regions from SNP 202711 to 203311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,900 DEBUG Processing 475/668 atomic regions from SNP 142349 to 142949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,931 DEBUG Processing 568/683 atomic regions from SNP 170253 to 170853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,952 DEBUG Processing 409/603 atomic regions from SNP 122417 to 123017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,956 DEBUG Processing 449/565 atomic regions from SNP 134611 to 135211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,042 DEBUG Processing 149/537 atomic regions from SNP 44548 to 45149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:05,147 DEBUG Processing 677/724 atomic regions from SNP 203011 to 203611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,162 DEBUG Processing 450/565 atomic regions from SNP 134911 to 135511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,169 DEBUG Processing 476/668 atomic regions from SNP 142649 to 143249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,182 DEBUG Processing 410/603 atomic regions from SNP 122717 to 123317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,208 DEBUG Processing 569/683 atomic regions from SNP 170553 to 171153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,260 DEBUG Processing 150/537 atomic regions from SNP 44849 to 45450 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:05,373 DEBUG Processing 451/565 atomic regions from SNP 135211 to 135811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,390 DEBUG Processing 678/724 atomic regions from SNP 203311 to 203911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,415 DEBUG Processing 411/603 atomic regions from SNP 123017 to 123617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,426 DEBUG Processing 477/668 atomic regions from SNP 142949 to 143549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,474 DEBUG Processing 570/683 atomic regions from SNP 170853 to 171453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,483 DEBUG Processing 151/537 atomic regions from SNP 45150 to 45751 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:05,569 DEBUG Processing 452/565 atomic regions from SNP 135511 to 136111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,629 DEBUG Processing 679/724 atomic regions from SNP 203611 to 204211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,641 DEBUG Processing 412/603 atomic regions from SNP 123317 to 123917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,664 DEBUG Processing 478/668 atomic regions from SNP 143249 to 143849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,701 DEBUG Processing 152/537 atomic regions from SNP 45451 to 46052 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:05,713 DEBUG Processing 571/683 atomic regions from SNP 171153 to 171753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,769 DEBUG Processing 453/565 atomic regions from SNP 135811 to 136411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,870 DEBUG Processing 680/724 atomic regions from SNP 203911 to 204511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,886 DEBUG Processing 413/603 atomic regions from SNP 123617 to 124217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,900 DEBUG Processing 479/668 atomic regions from SNP 143549 to 144149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,919 DEBUG Processing 153/537 atomic regions from SNP 45752 to 46353 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:05,959 DEBUG Processing 572/683 atomic regions from SNP 171453 to 172053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,975 DEBUG Processing 454/565 atomic regions from SNP 136111 to 136711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,110 DEBUG Processing 681/724 atomic regions from SNP 204211 to 204811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,136 DEBUG Processing 480/668 atomic regions from SNP 143849 to 144449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,138 DEBUG Processing 154/537 atomic regions from SNP 46053 to 46654 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:06,146 DEBUG Processing 414/603 atomic regions from SNP 123917 to 124517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,187 DEBUG Processing 455/565 atomic regions from SNP 136411 to 137011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,213 DEBUG Processing 573/683 atomic regions from SNP 171753 to 172353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,552 DEBUG Processing 682/724 atomic regions from SNP 204511 to 205111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,700 DEBUG Processing 155/537 atomic regions from SNP 46354 to 46955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:06,715 DEBUG Processing 481/668 atomic regions from SNP 144149 to 144749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,719 DEBUG Processing 456/565 atomic regions from SNP 136711 to 137311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,731 DEBUG Processing 415/603 atomic regions from SNP 124217 to 124817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,831 DEBUG Processing 574/683 atomic regions from SNP 172053 to 172653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,924 DEBUG Processing 156/537 atomic regions from SNP 46655 to 47256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:06,927 DEBUG Processing 683/724 atomic regions from SNP 204811 to 205411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,970 DEBUG Processing 457/565 atomic regions from SNP 137011 to 137611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,000 DEBUG Processing 482/668 atomic regions from SNP 144449 to 145049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,007 DEBUG Processing 416/603 atomic regions from SNP 124517 to 125117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,136 DEBUG Processing 575/683 atomic regions from SNP 172353 to 172953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,148 DEBUG Processing 157/537 atomic regions from SNP 46956 to 47557 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:07,225 DEBUG Processing 458/565 atomic regions from SNP 137311 to 137911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,244 DEBUG Processing 684/724 atomic regions from SNP 205111 to 205711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,293 DEBUG Processing 483/668 atomic regions from SNP 144749 to 145349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,317 DEBUG Processing 417/603 atomic regions from SNP 124817 to 125417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,425 DEBUG Processing 158/537 atomic regions from SNP 47257 to 47858 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:07,442 DEBUG Processing 576/683 atomic regions from SNP 172653 to 173253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,475 DEBUG Processing 459/565 atomic regions from SNP 137611 to 138211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,550 DEBUG Processing 685/724 atomic regions from SNP 205411 to 206011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,565 DEBUG Processing 484/668 atomic regions from SNP 145049 to 145649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,595 DEBUG Processing 418/603 atomic regions from SNP 125117 to 125717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,644 DEBUG Processing 159/537 atomic regions from SNP 47558 to 48159 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:07,695 DEBUG Processing 577/683 atomic regions from SNP 172953 to 173553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,700 DEBUG Processing 460/565 atomic regions from SNP 137911 to 138511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,830 DEBUG Processing 485/668 atomic regions from SNP 145349 to 145949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,847 DEBUG Processing 686/724 atomic regions from SNP 205711 to 206311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,857 DEBUG Processing 419/603 atomic regions from SNP 125417 to 126017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,918 DEBUG Processing 160/537 atomic regions from SNP 47859 to 48460 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:07,960 DEBUG Processing 461/565 atomic regions from SNP 138211 to 138811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,971 DEBUG Processing 578/683 atomic regions from SNP 173253 to 173853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,170 DEBUG Processing 486/668 atomic regions from SNP 145649 to 146249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,227 DEBUG Processing 687/724 atomic regions from SNP 206011 to 206611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,230 DEBUG Processing 420/603 atomic regions from SNP 125717 to 126317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,270 DEBUG Processing 161/537 atomic regions from SNP 48160 to 48761 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:08,315 DEBUG Processing 462/565 atomic regions from SNP 138511 to 139111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,346 DEBUG Processing 579/683 atomic regions from SNP 173553 to 174153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,563 DEBUG Processing 487/668 atomic regions from SNP 145949 to 146549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,600 DEBUG Processing 421/603 atomic regions from SNP 126017 to 126617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,626 DEBUG Processing 162/537 atomic regions from SNP 48461 to 49062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:08,677 DEBUG Processing 688/724 atomic regions from SNP 206311 to 206911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,690 DEBUG Processing 463/565 atomic regions from SNP 138811 to 139411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,738 DEBUG Processing 580/683 atomic regions from SNP 173853 to 174453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,889 DEBUG Processing 488/668 atomic regions from SNP 146249 to 146849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,903 DEBUG Processing 422/603 atomic regions from SNP 126317 to 126917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,912 DEBUG Processing 163/537 atomic regions from SNP 48762 to 49363 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:08,939 DEBUG Processing 464/565 atomic regions from SNP 139111 to 139711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,017 DEBUG Processing 689/724 atomic regions from SNP 206611 to 207211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,047 DEBUG Processing 581/683 atomic regions from SNP 174153 to 174753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,177 DEBUG Processing 489/668 atomic regions from SNP 146549 to 147149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,183 DEBUG Processing 164/537 atomic regions from SNP 49063 to 49664 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:09,190 DEBUG Processing 465/565 atomic regions from SNP 139411 to 140011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,201 DEBUG Processing 423/603 atomic regions from SNP 126617 to 127217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,395 DEBUG Processing 582/683 atomic regions from SNP 174453 to 175053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,419 DEBUG Processing 690/724 atomic regions from SNP 206911 to 207511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,552 DEBUG Processing 466/565 atomic regions from SNP 139711 to 140311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,559 DEBUG Processing 165/537 atomic regions from SNP 49364 to 49965 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:09,564 DEBUG Processing 490/668 atomic regions from SNP 146849 to 147449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,610 DEBUG Processing 424/603 atomic regions from SNP 126917 to 127517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,834 DEBUG Processing 691/724 atomic regions from SNP 207211 to 207811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,839 DEBUG Processing 583/683 atomic regions from SNP 174753 to 175353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,950 DEBUG Processing 166/537 atomic regions from SNP 49665 to 50266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:09,973 DEBUG Processing 467/565 atomic regions from SNP 140011 to 140611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,994 DEBUG Processing 491/668 atomic regions from SNP 147149 to 147749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,100 DEBUG Processing 425/603 atomic regions from SNP 127217 to 127817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,307 DEBUG Processing 584/683 atomic regions from SNP 175053 to 175653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,319 DEBUG Processing 692/724 atomic regions from SNP 207511 to 208111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,351 DEBUG Processing 167/537 atomic regions from SNP 49966 to 50567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:10,379 DEBUG Processing 468/565 atomic regions from SNP 140311 to 140911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,433 DEBUG Processing 492/668 atomic regions from SNP 147449 to 148049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,445 DEBUG Processing 426/603 atomic regions from SNP 127517 to 128117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,724 DEBUG Processing 585/683 atomic regions from SNP 175353 to 175953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,757 DEBUG Processing 693/724 atomic regions from SNP 207811 to 208411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,765 DEBUG Processing 469/565 atomic regions from SNP 140611 to 141211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,779 DEBUG Processing 168/537 atomic regions from SNP 50267 to 50868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:10,844 DEBUG Processing 427/603 atomic regions from SNP 127817 to 128417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,845 DEBUG Processing 493/668 atomic regions from SNP 147749 to 148349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,986 DEBUG Processing 586/683 atomic regions from SNP 175653 to 176253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,999 DEBUG Processing 470/565 atomic regions from SNP 140911 to 141511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,031 DEBUG Processing 169/537 atomic regions from SNP 50568 to 51169 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:11,059 DEBUG Processing 694/724 atomic regions from SNP 208111 to 208711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,207 DEBUG Processing 428/603 atomic regions from SNP 128117 to 128717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,207 DEBUG Processing 494/668 atomic regions from SNP 148049 to 148649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,351 DEBUG Processing 587/683 atomic regions from SNP 175953 to 176553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,354 DEBUG Processing 471/565 atomic regions from SNP 141211 to 141811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,354 DEBUG Processing 170/537 atomic regions from SNP 50869 to 51470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:11,433 DEBUG Processing 695/724 atomic regions from SNP 208411 to 209011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,566 DEBUG Processing 495/668 atomic regions from SNP 148349 to 148949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,568 DEBUG Processing 429/603 atomic regions from SNP 128417 to 129017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,657 DEBUG Processing 171/537 atomic regions from SNP 51170 to 51771 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:11,677 DEBUG Processing 472/565 atomic regions from SNP 141511 to 142111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,715 DEBUG Processing 588/683 atomic regions from SNP 176253 to 176853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,786 DEBUG Processing 696/724 atomic regions from SNP 208711 to 209311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,973 DEBUG Processing 496/668 atomic regions from SNP 148649 to 149249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,047 DEBUG Processing 473/565 atomic regions from SNP 141811 to 142411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,049 DEBUG Processing 430/603 atomic regions from SNP 128717 to 129317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,055 DEBUG Processing 172/537 atomic regions from SNP 51471 to 52072 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:12,173 DEBUG Processing 589/683 atomic regions from SNP 176553 to 177153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,295 DEBUG Processing 697/724 atomic regions from SNP 209011 to 209611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,433 DEBUG Processing 497/668 atomic regions from SNP 148949 to 149549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,511 DEBUG Processing 173/537 atomic regions from SNP 51772 to 52373 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:12,523 DEBUG Processing 474/565 atomic regions from SNP 142111 to 142711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,558 DEBUG Processing 431/603 atomic regions from SNP 129017 to 129617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,706 DEBUG Processing 590/683 atomic regions from SNP 176853 to 177453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,747 DEBUG Processing 698/724 atomic regions from SNP 209311 to 209911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,850 DEBUG Processing 498/668 atomic regions from SNP 149249 to 149849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,943 DEBUG Processing 174/537 atomic regions from SNP 52073 to 52674 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:12,946 DEBUG Processing 475/565 atomic regions from SNP 142411 to 143011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,034 DEBUG Processing 432/603 atomic regions from SNP 129317 to 129917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,235 DEBUG Processing 699/724 atomic regions from SNP 209611 to 210211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,294 DEBUG Processing 591/683 atomic regions from SNP 177153 to 177753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,296 DEBUG Processing 499/668 atomic regions from SNP 149549 to 150149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,339 DEBUG Processing 476/565 atomic regions from SNP 142711 to 143311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,391 DEBUG Processing 175/537 atomic regions from SNP 52374 to 52975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,509 DEBUG Processing 433/603 atomic regions from SNP 129617 to 130217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,757 DEBUG Processing 592/683 atomic regions from SNP 177453 to 178053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,769 DEBUG Processing 500/668 atomic regions from SNP 149849 to 150449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,773 DEBUG Processing 477/565 atomic regions from SNP 143011 to 143611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,788 DEBUG Processing 700/724 atomic regions from SNP 209911 to 210511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,853 DEBUG Processing 176/537 atomic regions from SNP 52675 to 53276 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,958 DEBUG Processing 434/603 atomic regions from SNP 129917 to 130517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,145 DEBUG Processing 478/565 atomic regions from SNP 143311 to 143911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,162 DEBUG Processing 593/683 atomic regions from SNP 177753 to 178353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,202 DEBUG Processing 501/668 atomic regions from SNP 150149 to 150749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,222 DEBUG Processing 701/724 atomic regions from SNP 210211 to 210811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,256 DEBUG Processing 177/537 atomic regions from SNP 52976 to 53577 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,413 DEBUG Processing 435/603 atomic regions from SNP 130217 to 130817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,546 DEBUG Processing 479/565 atomic regions from SNP 143611 to 144211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,601 DEBUG Processing 594/683 atomic regions from SNP 178053 to 178653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,618 DEBUG Processing 502/668 atomic regions from SNP 150449 to 151049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,647 DEBUG Processing 178/537 atomic regions from SNP 53277 to 53878 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,673 DEBUG Processing 702/724 atomic regions from SNP 210511 to 211111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,852 DEBUG Processing 436/603 atomic regions from SNP 130517 to 131117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,947 DEBUG Processing 480/565 atomic regions from SNP 143911 to 144511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,967 DEBUG Processing 179/537 atomic regions from SNP 53578 to 54179 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,981 DEBUG Processing 595/683 atomic regions from SNP 178353 to 178953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,002 DEBUG Processing 503/668 atomic regions from SNP 150749 to 151349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,047 DEBUG Processing 703/724 atomic regions from SNP 210811 to 211411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,153 DEBUG Processing 437/603 atomic regions from SNP 130817 to 131417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,178 DEBUG Processing 481/565 atomic regions from SNP 144211 to 144811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,269 DEBUG Processing 180/537 atomic regions from SNP 53879 to 54480 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,317 DEBUG Processing 596/683 atomic regions from SNP 178653 to 179253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,349 DEBUG Processing 504/668 atomic regions from SNP 151049 to 151649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,422 DEBUG Processing 704/724 atomic regions from SNP 211111 to 211711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,450 DEBUG Processing 482/565 atomic regions from SNP 144511 to 145111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,498 DEBUG Processing 438/603 atomic regions from SNP 131117 to 131717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,535 DEBUG Processing 181/537 atomic regions from SNP 54180 to 54781 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,644 DEBUG Processing 597/683 atomic regions from SNP 178953 to 179553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,667 DEBUG Processing 505/668 atomic regions from SNP 151349 to 151949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,779 DEBUG Processing 483/565 atomic regions from SNP 144811 to 145411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,800 DEBUG Processing 705/724 atomic regions from SNP 211411 to 212011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,856 DEBUG Processing 439/603 atomic regions from SNP 131417 to 132017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,887 DEBUG Processing 182/537 atomic regions from SNP 54481 to 55082 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,021 DEBUG Processing 598/683 atomic regions from SNP 179253 to 179853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,027 DEBUG Processing 506/668 atomic regions from SNP 151649 to 152249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,116 DEBUG Processing 484/565 atomic regions from SNP 145111 to 145711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,130 DEBUG Processing 706/724 atomic regions from SNP 211711 to 212311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,154 DEBUG Processing 440/603 atomic regions from SNP 131717 to 132317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,179 DEBUG Processing 183/537 atomic regions from SNP 54782 to 55383 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,281 DEBUG Processing 507/668 atomic regions from SNP 151949 to 152549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,292 DEBUG Processing 599/683 atomic regions from SNP 179553 to 180153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,458 DEBUG Processing 485/565 atomic regions from SNP 145411 to 146011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,516 DEBUG Processing 707/724 atomic regions from SNP 212011 to 212611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,554 DEBUG Processing 441/603 atomic regions from SNP 132017 to 132617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,578 DEBUG Processing 184/537 atomic regions from SNP 55083 to 55684 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,662 DEBUG Processing 508/668 atomic regions from SNP 152249 to 152849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,670 DEBUG Processing 600/683 atomic regions from SNP 179853 to 180453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,831 DEBUG Processing 486/565 atomic regions from SNP 145711 to 146311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,939 DEBUG Processing 708/724 atomic regions from SNP 212311 to 212911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,961 DEBUG Processing 442/603 atomic regions from SNP 132317 to 132917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,025 DEBUG Processing 185/537 atomic regions from SNP 55384 to 55985 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,099 DEBUG Processing 509/668 atomic regions from SNP 152549 to 153149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,112 DEBUG Processing 601/683 atomic regions from SNP 180153 to 180753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,219 DEBUG Processing 487/565 atomic regions from SNP 146011 to 146611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,429 DEBUG Processing 709/724 atomic regions from SNP 212611 to 213211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,443 DEBUG Processing 443/603 atomic regions from SNP 132617 to 133217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,469 DEBUG Processing 186/537 atomic regions from SNP 55685 to 56286 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,533 DEBUG Processing 602/683 atomic regions from SNP 180453 to 181053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,535 DEBUG Processing 510/668 atomic regions from SNP 152849 to 153449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,540 DEBUG Processing 488/565 atomic regions from SNP 146311 to 146911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,763 DEBUG Processing 710/724 atomic regions from SNP 212911 to 213511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,772 DEBUG Processing 444/603 atomic regions from SNP 132917 to 133517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,785 DEBUG Processing 187/537 atomic regions from SNP 55986 to 56587 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,883 DEBUG Processing 489/565 atomic regions from SNP 146611 to 147211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,921 DEBUG Processing 511/668 atomic regions from SNP 153149 to 153749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,923 DEBUG Processing 603/683 atomic regions from SNP 180753 to 181353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,115 DEBUG Processing 188/537 atomic regions from SNP 56287 to 56888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,150 DEBUG Processing 445/603 atomic regions from SNP 133217 to 133817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,165 DEBUG Processing 711/724 atomic regions from SNP 213211 to 213811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,259 DEBUG Processing 490/565 atomic regions from SNP 146911 to 147511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,314 DEBUG Processing 512/668 atomic regions from SNP 153449 to 154049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,330 DEBUG Processing 604/683 atomic regions from SNP 181053 to 181653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,445 DEBUG Processing 189/537 atomic regions from SNP 56588 to 57189 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,532 DEBUG Processing 446/603 atomic regions from SNP 133517 to 134117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,540 DEBUG Processing 712/724 atomic regions from SNP 213511 to 214111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,637 DEBUG Processing 491/565 atomic regions from SNP 147211 to 147811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,724 DEBUG Processing 513/668 atomic regions from SNP 153749 to 154349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,746 DEBUG Processing 605/683 atomic regions from SNP 181353 to 181953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,810 DEBUG Processing 190/537 atomic regions from SNP 56889 to 57490 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,942 DEBUG Processing 447/603 atomic regions from SNP 133817 to 134417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,985 DEBUG Processing 492/565 atomic regions from SNP 147511 to 148111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,998 DEBUG Processing 713/724 atomic regions from SNP 213811 to 214411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,076 DEBUG Processing 514/668 atomic regions from SNP 154049 to 154649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,123 DEBUG Processing 606/683 atomic regions from SNP 181653 to 182253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,154 DEBUG Processing 191/537 atomic regions from SNP 57190 to 57791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,373 DEBUG Processing 493/565 atomic regions from SNP 147811 to 148411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,383 DEBUG Processing 448/603 atomic regions from SNP 134117 to 134717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,457 DEBUG Processing 714/724 atomic regions from SNP 214111 to 214711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,474 DEBUG Processing 515/668 atomic regions from SNP 154349 to 154949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,501 DEBUG Processing 192/537 atomic regions from SNP 57491 to 58092 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,560 DEBUG Processing 607/683 atomic regions from SNP 181953 to 182553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,749 DEBUG Processing 494/565 atomic regions from SNP 148111 to 148711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,811 DEBUG Processing 449/603 atomic regions from SNP 134417 to 135017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,831 DEBUG Processing 193/537 atomic regions from SNP 57792 to 58393 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,853 DEBUG Processing 516/668 atomic regions from SNP 154649 to 155249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,872 DEBUG Processing 715/724 atomic regions from SNP 214411 to 215011 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,904 DEBUG Processing 608/683 atomic regions from SNP 182253 to 182853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,124 DEBUG Processing 495/565 atomic regions from SNP 148411 to 149011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,189 DEBUG Processing 194/537 atomic regions from SNP 58093 to 58694 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,217 DEBUG Processing 450/603 atomic regions from SNP 134717 to 135317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,226 DEBUG Processing 517/668 atomic regions from SNP 154949 to 155549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,278 DEBUG Processing 609/683 atomic regions from SNP 182553 to 183153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,312 DEBUG Processing 716/724 atomic regions from SNP 214711 to 215311 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,485 DEBUG Processing 496/565 atomic regions from SNP 148711 to 149311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,533 DEBUG Processing 195/537 atomic regions from SNP 58394 to 58995 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,565 DEBUG Processing 518/668 atomic regions from SNP 155249 to 155849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,573 DEBUG Processing 610/683 atomic regions from SNP 182853 to 183453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,582 DEBUG Processing 451/603 atomic regions from SNP 135017 to 135617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,633 DEBUG Processing 717/724 atomic regions from SNP 215011 to 215611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,688 DEBUG Processing 497/565 atomic regions from SNP 149011 to 149611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,770 DEBUG Processing 196/537 atomic regions from SNP 58695 to 59296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,867 DEBUG Processing 519/668 atomic regions from SNP 155549 to 156149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,883 DEBUG Processing 611/683 atomic regions from SNP 183153 to 183753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,913 DEBUG Processing 452/603 atomic regions from SNP 135317 to 135917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,977 DEBUG Processing 498/565 atomic regions from SNP 149311 to 149911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,009 DEBUG Processing 718/724 atomic regions from SNP 215311 to 215911 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,030 DEBUG Processing 197/537 atomic regions from SNP 58996 to 59596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,182 DEBUG Processing 520/668 atomic regions from SNP 155849 to 156449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,203 DEBUG Processing 612/683 atomic regions from SNP 183453 to 184053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,254 DEBUG Processing 453/603 atomic regions from SNP 135617 to 136217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,276 DEBUG Processing 499/565 atomic regions from SNP 149611 to 150211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,309 DEBUG Processing 198/537 atomic regions from SNP 59296 to 59896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,386 DEBUG Processing 719/724 atomic regions from SNP 215611 to 216211 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,504 DEBUG Processing 521/668 atomic regions from SNP 156149 to 156749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,558 DEBUG Processing 613/683 atomic regions from SNP 183753 to 184353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,631 DEBUG Processing 454/603 atomic regions from SNP 135917 to 136517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,643 DEBUG Processing 500/565 atomic regions from SNP 149911 to 150511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,655 DEBUG Processing 199/537 atomic regions from SNP 59596 to 60196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,745 DEBUG Processing 720/724 atomic regions from SNP 215911 to 216511 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,851 DEBUG Processing 522/668 atomic regions from SNP 156449 to 157049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,900 DEBUG Processing 614/683 atomic regions from SNP 184053 to 184653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,903 DEBUG Processing 200/537 atomic regions from SNP 59896 to 60496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,927 DEBUG Processing 501/565 atomic regions from SNP 150211 to 150811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,946 DEBUG Processing 455/603 atomic regions from SNP 136217 to 136817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,036 DEBUG Processing 721/724 atomic regions from SNP 216211 to 216811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,136 DEBUG Processing 523/668 atomic regions from SNP 156749 to 157349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,137 DEBUG Processing 201/537 atomic regions from SNP 60196 to 60796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,181 DEBUG Processing 615/683 atomic regions from SNP 184353 to 184953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,193 DEBUG Processing 502/565 atomic regions from SNP 150511 to 151111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,228 DEBUG Processing 456/603 atomic regions from SNP 136517 to 137117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,280 DEBUG Processing 722/724 atomic regions from SNP 216511 to 217111 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,348 DEBUG Processing 202/537 atomic regions from SNP 60496 to 61096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,382 DEBUG Processing 524/668 atomic regions from SNP 157049 to 157649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,424 DEBUG Processing 503/565 atomic regions from SNP 150811 to 151411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,440 DEBUG Processing 616/683 atomic regions from SNP 184653 to 185253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,499 DEBUG Processing 457/603 atomic regions from SNP 136817 to 137417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,553 DEBUG Processing 723/724 atomic regions from SNP 216811 to 217411 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,587 DEBUG Processing 203/537 atomic regions from SNP 60796 to 61396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,675 DEBUG Processing 525/668 atomic regions from SNP 157349 to 157949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,698 DEBUG Processing 504/565 atomic regions from SNP 151111 to 151711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,787 DEBUG Processing 617/683 atomic regions from SNP 184953 to 185553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,849 DEBUG Processing 204/537 atomic regions from SNP 61096 to 61696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,849 DEBUG Processing 458/603 atomic regions from SNP 137117 to 137717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,864 DEBUG Processing 724/724 atomic regions from SNP 217111 to 217711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,956 DEBUG Processing 505/565 atomic regions from SNP 151411 to 152011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,965 DEBUG Processing 526/668 atomic regions from SNP 157649 to 158249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,023 DEBUG Unique SNPs positions in subchromosome 1: 217712 2025-01-31 09:55:23,081 DEBUG Processing 205/537 atomic regions from SNP 61396 to 61996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,087 DEBUG Processing 618/683 atomic regions from SNP 185253 to 185853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,140 DEBUG Processing 459/603 atomic regions from SNP 137417 to 138017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,179 DEBUG Processing 506/565 atomic regions from SNP 151711 to 152311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,205 DEBUG Processing 527/668 atomic regions from SNP 157949 to 158549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,277 DEBUG Processing 206/537 atomic regions from SNP 61696 to 62296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,325 DEBUG Processing 619/683 atomic regions from SNP 185553 to 186153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,392 DEBUG Processing 460/603 atomic regions from SNP 137717 to 138317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,399 DEBUG Processing 507/565 atomic regions from SNP 152011 to 152611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,466 DEBUG Processing 528/668 atomic regions from SNP 158249 to 158849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,546 DEBUG Processing 207/537 atomic regions from SNP 61996 to 62596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,610 DEBUG Processing 620/683 atomic regions from SNP 185853 to 186453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,661 DEBUG Processing 508/565 atomic regions from SNP 152311 to 152911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,720 DEBUG Processing 461/603 atomic regions from SNP 138017 to 138617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,813 DEBUG Processing 529/668 atomic regions from SNP 158549 to 159149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,834 DEBUG Processing 208/537 atomic regions from SNP 62296 to 62896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,900 DEBUG Processing 509/565 atomic regions from SNP 152611 to 153211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,909 DEBUG Processing 621/683 atomic regions from SNP 186153 to 186753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,000 DEBUG Processing 462/603 atomic regions from SNP 138317 to 138917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,090 DEBUG Processing 530/668 atomic regions from SNP 158849 to 159449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,110 DEBUG Processing 209/537 atomic regions from SNP 62596 to 63196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,256 DEBUG Processing 510/565 atomic regions from SNP 152911 to 153511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,262 DEBUG Processing 622/683 atomic regions from SNP 186453 to 187053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,336 DEBUG Processing 463/603 atomic regions from SNP 138617 to 139217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,357 DEBUG Processing 210/537 atomic regions from SNP 62896 to 63496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,387 DEBUG Processing 531/668 atomic regions from SNP 159149 to 159749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,495 DEBUG Processing 511/565 atomic regions from SNP 153211 to 153811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,541 DEBUG Processing 623/683 atomic regions from SNP 186753 to 187353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,622 DEBUG Processing 211/537 atomic regions from SNP 63196 to 63796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,627 DEBUG Processing 464/603 atomic regions from SNP 138917 to 139517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,667 DEBUG Processing 532/668 atomic regions from SNP 159449 to 160049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,717 DEBUG Processing 512/565 atomic regions from SNP 153511 to 154111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,811 DEBUG Processing 624/683 atomic regions from SNP 187053 to 187653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,854 DEBUG Processing 212/537 atomic regions from SNP 63496 to 64096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,894 DEBUG Processing 465/603 atomic regions from SNP 139217 to 139817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,920 DEBUG Processing 533/668 atomic regions from SNP 159749 to 160349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,927 DEBUG Processing 513/565 atomic regions from SNP 153811 to 154411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,036 DEBUG Processing 213/537 atomic regions from SNP 63796 to 64396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,046 DEBUG Processing 625/683 atomic regions from SNP 187353 to 187953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,122 DEBUG Processing 514/565 atomic regions from SNP 154111 to 154711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,140 DEBUG Processing 466/603 atomic regions from SNP 139517 to 140117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,149 DEBUG Processing 534/668 atomic regions from SNP 160049 to 160649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,215 DEBUG Processing 214/537 atomic regions from SNP 64096 to 64696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,266 DEBUG Processing 626/683 atomic regions from SNP 187653 to 188253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,327 DEBUG Processing 515/565 atomic regions from SNP 154411 to 155011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,381 DEBUG Processing 535/668 atomic regions from SNP 160349 to 160949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,391 DEBUG Processing 467/603 atomic regions from SNP 139817 to 140417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,402 DEBUG Processing 215/537 atomic regions from SNP 64396 to 64996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,486 DEBUG Processing 627/683 atomic regions from SNP 187953 to 188553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,538 DEBUG Processing 516/565 atomic regions from SNP 154711 to 155311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,594 DEBUG Processing 216/537 atomic regions from SNP 64696 to 65296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,611 DEBUG Processing 536/668 atomic regions from SNP 160649 to 161249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,645 DEBUG Processing 468/603 atomic regions from SNP 140117 to 140717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,705 DEBUG Processing 628/683 atomic regions from SNP 188253 to 188853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,758 DEBUG Processing 517/565 atomic regions from SNP 155011 to 155611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,782 DEBUG Processing 217/537 atomic regions from SNP 64996 to 65596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,837 DEBUG Processing 537/668 atomic regions from SNP 160949 to 161549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,895 DEBUG Processing 469/603 atomic regions from SNP 140417 to 141017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,926 DEBUG Processing 629/683 atomic regions from SNP 188553 to 189153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,976 DEBUG Processing 518/565 atomic regions from SNP 155311 to 155911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,981 DEBUG Processing 218/537 atomic regions from SNP 65296 to 65896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,090 DEBUG Processing 538/668 atomic regions from SNP 161249 to 161849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,159 DEBUG Processing 630/683 atomic regions from SNP 188853 to 189453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,170 DEBUG Processing 470/603 atomic regions from SNP 140717 to 141317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,177 DEBUG Processing 219/537 atomic regions from SNP 65596 to 66196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,185 DEBUG Processing 519/565 atomic regions from SNP 155611 to 156211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,312 DEBUG Processing 539/668 atomic regions from SNP 161549 to 162149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,369 DEBUG Processing 220/537 atomic regions from SNP 65896 to 66496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,389 DEBUG Processing 631/683 atomic regions from SNP 189153 to 189753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,401 DEBUG Processing 520/565 atomic regions from SNP 155911 to 156511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,419 DEBUG Processing 471/603 atomic regions from SNP 141017 to 141617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,531 DEBUG Processing 540/668 atomic regions from SNP 161849 to 162449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,563 DEBUG Processing 221/537 atomic regions from SNP 66196 to 66796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,618 DEBUG Processing 632/683 atomic regions from SNP 189453 to 190053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,642 DEBUG Processing 521/565 atomic regions from SNP 156211 to 156811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,654 DEBUG Processing 472/603 atomic regions from SNP 141317 to 141917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,789 DEBUG Processing 541/668 atomic regions from SNP 162149 to 162749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,805 DEBUG Processing 222/537 atomic regions from SNP 66496 to 67096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,912 DEBUG Processing 473/603 atomic regions from SNP 141617 to 142217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,915 DEBUG Processing 633/683 atomic regions from SNP 189753 to 190353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,915 DEBUG Processing 522/565 atomic regions from SNP 156511 to 157111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,988 DEBUG Processing 223/537 atomic regions from SNP 66796 to 67396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,006 DEBUG Processing 542/668 atomic regions from SNP 162449 to 163049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,138 DEBUG Processing 523/565 atomic regions from SNP 156811 to 157411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,148 DEBUG Processing 634/683 atomic regions from SNP 190053 to 190653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,151 DEBUG Processing 474/603 atomic regions from SNP 141917 to 142517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,175 DEBUG Processing 224/537 atomic regions from SNP 67096 to 67696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,221 DEBUG Processing 543/668 atomic regions from SNP 162749 to 163349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,368 DEBUG Processing 524/565 atomic regions from SNP 157111 to 157711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,368 DEBUG Processing 225/537 atomic regions from SNP 67396 to 67996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,406 DEBUG Processing 635/683 atomic regions from SNP 190353 to 190953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,415 DEBUG Processing 475/603 atomic regions from SNP 142217 to 142817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,472 DEBUG Processing 544/668 atomic regions from SNP 163049 to 163649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,561 DEBUG Processing 226/537 atomic regions from SNP 67696 to 68296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,605 DEBUG Processing 525/565 atomic regions from SNP 157411 to 158011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,668 DEBUG Processing 476/603 atomic regions from SNP 142517 to 143117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,670 DEBUG Processing 636/683 atomic regions from SNP 190653 to 191253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,718 DEBUG Processing 545/668 atomic regions from SNP 163349 to 163949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,748 DEBUG Processing 227/537 atomic regions from SNP 67996 to 68596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,833 DEBUG Processing 526/565 atomic regions from SNP 157711 to 158311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,915 DEBUG Processing 477/603 atomic regions from SNP 142817 to 143417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,928 DEBUG Processing 637/683 atomic regions from SNP 190953 to 191553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,936 DEBUG Processing 228/537 atomic regions from SNP 68296 to 68896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,964 DEBUG Processing 546/668 atomic regions from SNP 163649 to 164249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,059 DEBUG Processing 527/565 atomic regions from SNP 158011 to 158611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,123 DEBUG Processing 229/537 atomic regions from SNP 68596 to 69196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,172 DEBUG Processing 478/603 atomic regions from SNP 143117 to 143717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,181 DEBUG Processing 638/683 atomic regions from SNP 191253 to 191853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,194 DEBUG Processing 547/668 atomic regions from SNP 163949 to 164549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,285 DEBUG Processing 528/565 atomic regions from SNP 158311 to 158911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,309 DEBUG Processing 230/537 atomic regions from SNP 68896 to 69496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,412 DEBUG Processing 479/603 atomic regions from SNP 143417 to 144017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,418 DEBUG Processing 639/683 atomic regions from SNP 191553 to 192153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,418 DEBUG Processing 548/668 atomic regions from SNP 164249 to 164849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,499 DEBUG Processing 231/537 atomic regions from SNP 69196 to 69796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,510 DEBUG Processing 529/565 atomic regions from SNP 158611 to 159211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,651 DEBUG Processing 480/603 atomic regions from SNP 143717 to 144317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,661 DEBUG Processing 549/668 atomic regions from SNP 164549 to 165149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,665 DEBUG Processing 640/683 atomic regions from SNP 191853 to 192453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,692 DEBUG Processing 232/537 atomic regions from SNP 69496 to 70096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,739 DEBUG Processing 530/565 atomic regions from SNP 158911 to 159511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,893 DEBUG Processing 481/603 atomic regions from SNP 144017 to 144617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,900 DEBUG Processing 233/537 atomic regions from SNP 69796 to 70396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,927 DEBUG Processing 550/668 atomic regions from SNP 164849 to 165449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,936 DEBUG Processing 641/683 atomic regions from SNP 192153 to 192753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,030 DEBUG Processing 531/565 atomic regions from SNP 159211 to 159811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,104 DEBUG Processing 234/537 atomic regions from SNP 70096 to 70696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,148 DEBUG Processing 482/603 atomic regions from SNP 144317 to 144917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,194 DEBUG Processing 551/668 atomic regions from SNP 165149 to 165749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,206 DEBUG Processing 642/683 atomic regions from SNP 192453 to 193053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,260 DEBUG Processing 532/565 atomic regions from SNP 159511 to 160111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,288 DEBUG Processing 235/537 atomic regions from SNP 70396 to 70996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,400 DEBUG Processing 483/603 atomic regions from SNP 144617 to 145217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,448 DEBUG Processing 552/668 atomic regions from SNP 165449 to 166049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,493 DEBUG Processing 643/683 atomic regions from SNP 192753 to 193353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,498 DEBUG Processing 236/537 atomic regions from SNP 70696 to 71296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,509 DEBUG Processing 533/565 atomic regions from SNP 159811 to 160411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,667 DEBUG Processing 484/603 atomic regions from SNP 144917 to 145517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,721 DEBUG Processing 553/668 atomic regions from SNP 165749 to 166349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,729 DEBUG Processing 237/537 atomic regions from SNP 70996 to 71596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,762 DEBUG Processing 644/683 atomic regions from SNP 193053 to 193653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,773 DEBUG Processing 534/565 atomic regions from SNP 160111 to 160711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,912 DEBUG Processing 485/603 atomic regions from SNP 145217 to 145817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,927 DEBUG Processing 238/537 atomic regions from SNP 71296 to 71896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,967 DEBUG Processing 554/668 atomic regions from SNP 166049 to 166649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,996 DEBUG Processing 535/565 atomic regions from SNP 160411 to 161011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,999 DEBUG Processing 645/683 atomic regions from SNP 193353 to 193953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,121 DEBUG Processing 239/537 atomic regions from SNP 71596 to 72196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,157 DEBUG Processing 486/603 atomic regions from SNP 145517 to 146117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,217 DEBUG Processing 555/668 atomic regions from SNP 166349 to 166949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,218 DEBUG Processing 536/565 atomic regions from SNP 160711 to 161311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,237 DEBUG Processing 646/683 atomic regions from SNP 193653 to 194253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,320 DEBUG Processing 240/537 atomic regions from SNP 71896 to 72496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,413 DEBUG Processing 487/603 atomic regions from SNP 145817 to 146417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,457 DEBUG Processing 537/565 atomic regions from SNP 161011 to 161611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,482 DEBUG Processing 556/668 atomic regions from SNP 166649 to 167249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,511 DEBUG Processing 647/683 atomic regions from SNP 193953 to 194553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,553 DEBUG Processing 241/537 atomic regions from SNP 72196 to 72796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,738 DEBUG Processing 488/603 atomic regions from SNP 146117 to 146717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,744 DEBUG Processing 538/565 atomic regions from SNP 161311 to 161911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,771 DEBUG Processing 557/668 atomic regions from SNP 166949 to 167549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,783 DEBUG Processing 648/683 atomic regions from SNP 194253 to 194853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,796 DEBUG Processing 242/537 atomic regions from SNP 72496 to 73096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,977 DEBUG Processing 539/565 atomic regions from SNP 161611 to 162211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,979 DEBUG Processing 489/603 atomic regions from SNP 146417 to 147017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,006 DEBUG Processing 558/668 atomic regions from SNP 167249 to 167849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,023 DEBUG Processing 243/537 atomic regions from SNP 72796 to 73396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,030 DEBUG Processing 649/683 atomic regions from SNP 194553 to 195153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,209 DEBUG Processing 540/565 atomic regions from SNP 161911 to 162511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,219 DEBUG Processing 490/603 atomic regions from SNP 146717 to 147317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,232 DEBUG Processing 244/537 atomic regions from SNP 73096 to 73696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,239 DEBUG Processing 559/668 atomic regions from SNP 167549 to 168149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,273 DEBUG Processing 650/683 atomic regions from SNP 194853 to 195453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,444 DEBUG Processing 541/565 atomic regions from SNP 162211 to 162811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,445 DEBUG Processing 245/537 atomic regions from SNP 73396 to 73996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,460 DEBUG Processing 491/603 atomic regions from SNP 147017 to 147617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,465 DEBUG Processing 560/668 atomic regions from SNP 167849 to 168449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,505 DEBUG Processing 651/683 atomic regions from SNP 195153 to 195753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,666 DEBUG Processing 246/537 atomic regions from SNP 73696 to 74296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,671 DEBUG Processing 542/565 atomic regions from SNP 162511 to 163111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,692 DEBUG Processing 561/668 atomic regions from SNP 168149 to 168749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,705 DEBUG Processing 492/603 atomic regions from SNP 147317 to 147917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,740 DEBUG Processing 652/683 atomic regions from SNP 195453 to 196053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,871 DEBUG Processing 247/537 atomic regions from SNP 73996 to 74596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,898 DEBUG Processing 543/565 atomic regions from SNP 162811 to 163411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,921 DEBUG Processing 562/668 atomic regions from SNP 168449 to 169049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,953 DEBUG Processing 493/603 atomic regions from SNP 147617 to 148217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,976 DEBUG Processing 653/683 atomic regions from SNP 195753 to 196353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,080 DEBUG Processing 248/537 atomic regions from SNP 74296 to 74896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,117 DEBUG Processing 544/565 atomic regions from SNP 163111 to 163711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,155 DEBUG Processing 563/668 atomic regions from SNP 168749 to 169349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,197 DEBUG Processing 494/603 atomic regions from SNP 147917 to 148517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,210 DEBUG Processing 654/683 atomic regions from SNP 196053 to 196653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,300 DEBUG Processing 249/537 atomic regions from SNP 74596 to 75196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,334 DEBUG Processing 545/565 atomic regions from SNP 163411 to 164011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,393 DEBUG Processing 564/668 atomic regions from SNP 169049 to 169649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,429 DEBUG Processing 495/603 atomic regions from SNP 148217 to 148817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,441 DEBUG Processing 655/683 atomic regions from SNP 196353 to 196953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,526 DEBUG Processing 250/537 atomic regions from SNP 74896 to 75496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,542 DEBUG Processing 546/565 atomic regions from SNP 163711 to 164311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,632 DEBUG Processing 565/668 atomic regions from SNP 169349 to 169949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,648 DEBUG Processing 496/603 atomic regions from SNP 148517 to 149117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,671 DEBUG Processing 656/683 atomic regions from SNP 196653 to 197253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,742 DEBUG Processing 251/537 atomic regions from SNP 75196 to 75796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,753 DEBUG Processing 547/565 atomic regions from SNP 164011 to 164611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,877 DEBUG Processing 566/668 atomic regions from SNP 169649 to 170249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,878 DEBUG Processing 497/603 atomic regions from SNP 148817 to 149417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,905 DEBUG Processing 657/683 atomic regions from SNP 196953 to 197553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,939 DEBUG Processing 252/537 atomic regions from SNP 75496 to 76096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,949 DEBUG Processing 548/565 atomic regions from SNP 164311 to 164911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,097 DEBUG Processing 498/603 atomic regions from SNP 149117 to 149717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,107 DEBUG Processing 567/668 atomic regions from SNP 169949 to 170549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,145 DEBUG Processing 253/537 atomic regions from SNP 75796 to 76396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,151 DEBUG Processing 658/683 atomic regions from SNP 197253 to 197853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,152 DEBUG Processing 549/565 atomic regions from SNP 164611 to 165211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,305 DEBUG Processing 499/603 atomic regions from SNP 149417 to 150017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,327 DEBUG Processing 568/668 atomic regions from SNP 170249 to 170849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,352 DEBUG Processing 550/565 atomic regions from SNP 164911 to 165511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,359 DEBUG Processing 254/537 atomic regions from SNP 76096 to 76696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,395 DEBUG Processing 659/683 atomic regions from SNP 197553 to 198153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,514 DEBUG Processing 500/603 atomic regions from SNP 149717 to 150317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,556 DEBUG Processing 551/565 atomic regions from SNP 165211 to 165811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,556 DEBUG Processing 569/668 atomic regions from SNP 170549 to 171149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,591 DEBUG Processing 255/537 atomic regions from SNP 76396 to 76996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,639 DEBUG Processing 660/683 atomic regions from SNP 197853 to 198453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,724 DEBUG Processing 501/603 atomic regions from SNP 150017 to 150617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,757 DEBUG Processing 552/565 atomic regions from SNP 165511 to 166111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,808 DEBUG Processing 570/668 atomic regions from SNP 170849 to 171449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,822 DEBUG Processing 256/537 atomic regions from SNP 76696 to 77296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,885 DEBUG Processing 661/683 atomic regions from SNP 198153 to 198753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,947 DEBUG Processing 502/603 atomic regions from SNP 150317 to 150917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,970 DEBUG Processing 553/565 atomic regions from SNP 165811 to 166411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,040 DEBUG Processing 571/668 atomic regions from SNP 171149 to 171749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,067 DEBUG Processing 257/537 atomic regions from SNP 76996 to 77596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,142 DEBUG Processing 662/683 atomic regions from SNP 198453 to 199053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,211 DEBUG Processing 503/603 atomic regions from SNP 150617 to 151217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,237 DEBUG Processing 554/565 atomic regions from SNP 166111 to 166711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,283 DEBUG Processing 572/668 atomic regions from SNP 171449 to 172049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,301 DEBUG Processing 258/537 atomic regions from SNP 77296 to 77896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,384 DEBUG Processing 663/683 atomic regions from SNP 198753 to 199353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,429 DEBUG Processing 504/603 atomic regions from SNP 150917 to 151517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,465 DEBUG Processing 555/565 atomic regions from SNP 166411 to 167011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,506 DEBUG Processing 259/537 atomic regions from SNP 77596 to 78196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,514 DEBUG Processing 573/668 atomic regions from SNP 171749 to 172349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,626 DEBUG Processing 664/683 atomic regions from SNP 199053 to 199653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,651 DEBUG Processing 505/603 atomic regions from SNP 151217 to 151817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,682 DEBUG Processing 556/565 atomic regions from SNP 166711 to 167311 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,717 DEBUG Processing 260/537 atomic regions from SNP 77896 to 78496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,748 DEBUG Processing 574/668 atomic regions from SNP 172049 to 172649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,891 DEBUG Processing 506/603 atomic regions from SNP 151517 to 152117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,895 DEBUG Processing 665/683 atomic regions from SNP 199353 to 199953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,925 DEBUG Processing 557/565 atomic regions from SNP 167011 to 167611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,942 DEBUG Processing 261/537 atomic regions from SNP 78196 to 78796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,992 DEBUG Processing 575/668 atomic regions from SNP 172349 to 172949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,122 DEBUG Processing 507/603 atomic regions from SNP 151817 to 152417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,150 DEBUG Processing 558/565 atomic regions from SNP 167311 to 167911 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,151 DEBUG Processing 262/537 atomic regions from SNP 78496 to 79096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,155 DEBUG Processing 666/683 atomic regions from SNP 199653 to 200253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,229 DEBUG Processing 576/668 atomic regions from SNP 172649 to 173249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,346 DEBUG Processing 508/603 atomic regions from SNP 152117 to 152717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,349 DEBUG Processing 263/537 atomic regions from SNP 78796 to 79396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,375 DEBUG Processing 559/565 atomic regions from SNP 167611 to 168211 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,404 DEBUG Processing 667/683 atomic regions from SNP 199953 to 200553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,459 DEBUG Processing 577/668 atomic regions from SNP 172949 to 173549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,553 DEBUG Processing 264/537 atomic regions from SNP 79096 to 79696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,584 DEBUG Processing 509/603 atomic regions from SNP 152417 to 153017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,618 DEBUG Processing 560/565 atomic regions from SNP 167911 to 168511 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,680 DEBUG Processing 668/683 atomic regions from SNP 200253 to 200853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,771 DEBUG Processing 578/668 atomic regions from SNP 173249 to 173849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,958 DEBUG Processing 265/537 atomic regions from SNP 79396 to 79996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,044 DEBUG Processing 510/603 atomic regions from SNP 152717 to 153317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,050 DEBUG Processing 561/565 atomic regions from SNP 168211 to 168811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,099 DEBUG Processing 669/683 atomic regions from SNP 200553 to 201153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,125 DEBUG Processing 579/668 atomic regions from SNP 173549 to 174149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,148 DEBUG Processing 266/537 atomic regions from SNP 79696 to 80296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,286 DEBUG Processing 562/565 atomic regions from SNP 168511 to 169111 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,291 DEBUG Processing 511/603 atomic regions from SNP 153017 to 153617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,349 DEBUG Processing 670/683 atomic regions from SNP 200853 to 201453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,351 DEBUG Processing 267/537 atomic regions from SNP 79996 to 80596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,395 DEBUG Processing 580/668 atomic regions from SNP 173849 to 174449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,549 DEBUG Processing 563/565 atomic regions from SNP 168811 to 169411 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,574 DEBUG Processing 512/603 atomic regions from SNP 153317 to 153917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,623 DEBUG Processing 268/537 atomic regions from SNP 80296 to 80896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,679 DEBUG Processing 671/683 atomic regions from SNP 201153 to 201753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,759 DEBUG Processing 581/668 atomic regions from SNP 174149 to 174749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,869 DEBUG Processing 564/565 atomic regions from SNP 169111 to 169711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,887 DEBUG Processing 269/537 atomic regions from SNP 80596 to 81196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,896 DEBUG Processing 513/603 atomic regions from SNP 153617 to 154217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,951 DEBUG Processing 672/683 atomic regions from SNP 201453 to 202053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,999 DEBUG Processing 582/668 atomic regions from SNP 174449 to 175049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,096 DEBUG Processing 270/537 atomic regions from SNP 80896 to 81496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,101 DEBUG Processing 565/565 atomic regions from SNP 169411 to 170011 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,159 DEBUG Processing 514/603 atomic regions from SNP 153917 to 154517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,207 DEBUG Processing 673/683 atomic regions from SNP 201753 to 202353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,260 DEBUG Processing 583/668 atomic regions from SNP 174749 to 175349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,264 DEBUG Unique SNPs positions in subchromosome 1: 170012 2025-01-31 09:55:37,299 DEBUG Processing 271/537 atomic regions from SNP 81196 to 81796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,416 DEBUG Processing 515/603 atomic regions from SNP 154217 to 154817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,456 DEBUG Processing 674/683 atomic regions from SNP 202053 to 202653 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,496 DEBUG Processing 272/537 atomic regions from SNP 81496 to 82096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,519 DEBUG Processing 584/668 atomic regions from SNP 175049 to 175649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,674 DEBUG Processing 516/603 atomic regions from SNP 154517 to 155117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,702 DEBUG Processing 273/537 atomic regions from SNP 81796 to 82396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,712 DEBUG Processing 675/683 atomic regions from SNP 202353 to 202953 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,777 DEBUG Processing 585/668 atomic regions from SNP 175349 to 175949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,901 DEBUG Processing 274/537 atomic regions from SNP 82096 to 82696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,913 DEBUG Processing 517/603 atomic regions from SNP 154817 to 155417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,967 DEBUG Processing 676/683 atomic regions from SNP 202653 to 203253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,052 DEBUG Processing 586/668 atomic regions from SNP 175649 to 176249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,189 DEBUG Processing 275/537 atomic regions from SNP 82396 to 82996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,221 DEBUG Processing 518/603 atomic regions from SNP 155117 to 155717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,293 DEBUG Processing 677/683 atomic regions from SNP 202953 to 203553 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,338 DEBUG Processing 587/668 atomic regions from SNP 175949 to 176549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,473 DEBUG Processing 276/537 atomic regions from SNP 82696 to 83296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,502 DEBUG Processing 519/603 atomic regions from SNP 155417 to 156017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,576 DEBUG Processing 678/683 atomic regions from SNP 203253 to 203853 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,584 DEBUG Processing 588/668 atomic regions from SNP 176249 to 176849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,669 DEBUG Processing 277/537 atomic regions from SNP 82996 to 83596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,728 DEBUG Processing 520/603 atomic regions from SNP 155717 to 156317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,818 DEBUG Processing 589/668 atomic regions from SNP 176549 to 177149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,821 DEBUG Processing 679/683 atomic regions from SNP 203553 to 204153 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,858 DEBUG Processing 278/537 atomic regions from SNP 83296 to 83896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,936 DEBUG Processing 521/603 atomic regions from SNP 156017 to 156617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,044 DEBUG Processing 590/668 atomic regions from SNP 176849 to 177449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,048 DEBUG Processing 279/537 atomic regions from SNP 83596 to 84196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,057 DEBUG Processing 680/683 atomic regions from SNP 203853 to 204453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,152 DEBUG Processing 522/603 atomic regions from SNP 156317 to 156917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,242 DEBUG Processing 280/537 atomic regions from SNP 83896 to 84496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,253 DEBUG Subchromosome time: 223.56771882704925, subchromosome SNPs: 217712 2025-01-31 09:55:39,254 DEBUG Estimated BADs: [15.13, 3.03, 0.76, 0.38, 1.51, 0.50, 1.51, 0.38, 0.76, 6.05, 1.51, 3.03, 1.51, 4.54, 1.51, 3.03, 1.51, 0.38, 0.76, 3.03, 1.51, 0.76, 3.03] SNP counts: [147, 6601, 10189, 11450, 9342, 7520, 13845, 12663, 9552, 194, 18318, 3691, 15248, 3192, 7343, 9030, 20970, 4207, 1754, 16943, 14025, 8560, 12928] SNP IDs counts: [147, 6601, 10189, 11450, 9342, 7520, 13845, 12663, 9552, 194, 18318, 3691, 15248, 3192, 7343, 9030, 20970, 4207, 1754, 16943, 14025, 8560, 12928] Critical gap: 585218bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.72Mbp, 12.58Mbp, 19.25Mbp, 24.34Mbp, 28.68Mbp, 36.35Mbp, 43.47Mbp, 48.77Mbp, 48.88Mbp, 58.90Mbp, 60.92Mbp, 69.03Mbp, 70.70Mbp, 74.83Mbp, 79.60Mbp, 90.80Mbp, 93.18Mbp, 94.13Mbp, 103.06Mbp, 110.54Mbp, 115.15Mbp, 122.08Mbp] 2025-01-31 09:55:39,254 DEBUG chr11 time: 223.56821299297735 s 2025-01-31 09:55:39,271 DEBUG Processing 591/668 atomic regions from SNP 177149 to 177749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,297 DEBUG Processing 681/683 atomic regions from SNP 204153 to 204753 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,371 DEBUG Processing 523/603 atomic regions from SNP 156617 to 157217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,376 DEBUG chr11: Fitting background model for 23 segments 2025-01-31 09:55:39,429 DEBUG Processing 281/537 atomic regions from SNP 84196 to 84796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,497 DEBUG Processing 592/668 atomic regions from SNP 177449 to 178049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,543 DEBUG Processing 682/683 atomic regions from SNP 204453 to 205053 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,599 DEBUG Processing 524/603 atomic regions from SNP 156917 to 157517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,615 DEBUG Processing 282/537 atomic regions from SNP 84496 to 85096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,718 DEBUG Processing 593/668 atomic regions from SNP 177749 to 178349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,801 DEBUG Processing 683/683 atomic regions from SNP 204753 to 205353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,812 DEBUG Processing 283/537 atomic regions from SNP 84796 to 85396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,826 DEBUG Processing 525/603 atomic regions from SNP 157217 to 157817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,942 DEBUG Processing 594/668 atomic regions from SNP 178049 to 178649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,967 DEBUG Unique SNPs positions in subchromosome 1: 205354 2025-01-31 09:55:40,003 DEBUG Processing 284/537 atomic regions from SNP 85096 to 85696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,055 DEBUG Processing 526/603 atomic regions from SNP 157517 to 158117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,162 DEBUG Processing 595/668 atomic regions from SNP 178349 to 178949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,193 DEBUG Processing 285/537 atomic regions from SNP 85396 to 85996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,272 DEBUG Processing 527/603 atomic regions from SNP 157817 to 158417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,385 DEBUG Processing 286/537 atomic regions from SNP 85696 to 86296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,388 DEBUG Processing 596/668 atomic regions from SNP 178649 to 179249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,496 DEBUG Processing 528/603 atomic regions from SNP 158117 to 158717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,579 DEBUG Processing 287/537 atomic regions from SNP 85996 to 86596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,615 DEBUG Processing 597/668 atomic regions from SNP 178949 to 179549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,720 DEBUG Processing 529/603 atomic regions from SNP 158417 to 159017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,771 DEBUG Processing 288/537 atomic regions from SNP 86296 to 86896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,848 DEBUG Processing 598/668 atomic regions from SNP 179249 to 179849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,949 DEBUG Processing 530/603 atomic regions from SNP 158717 to 159317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,960 DEBUG Processing 289/537 atomic regions from SNP 86596 to 87196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,072 DEBUG Processing 599/668 atomic regions from SNP 179549 to 180149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,145 DEBUG Processing 290/537 atomic regions from SNP 86896 to 87496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,168 DEBUG Processing 531/603 atomic regions from SNP 159017 to 159617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,304 DEBUG Processing 600/668 atomic regions from SNP 179849 to 180449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,339 DEBUG Processing 291/537 atomic regions from SNP 87196 to 87796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,394 DEBUG Processing 532/603 atomic regions from SNP 159317 to 159917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,525 DEBUG Processing 292/537 atomic regions from SNP 87496 to 88096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,534 DEBUG Processing 601/668 atomic regions from SNP 180149 to 180749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,621 DEBUG Processing 533/603 atomic regions from SNP 159617 to 160217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,712 DEBUG Processing 293/537 atomic regions from SNP 87796 to 88396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,757 DEBUG Processing 602/668 atomic regions from SNP 180449 to 181049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,836 DEBUG Processing 534/603 atomic regions from SNP 159917 to 160517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,909 DEBUG Processing 294/537 atomic regions from SNP 88096 to 88696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,005 DEBUG Processing 603/668 atomic regions from SNP 180749 to 181349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,061 DEBUG Processing 535/603 atomic regions from SNP 160217 to 160817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,097 DEBUG Processing 295/537 atomic regions from SNP 88396 to 88996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,247 DEBUG Processing 604/668 atomic regions from SNP 181049 to 181649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,283 DEBUG Processing 536/603 atomic regions from SNP 160517 to 161117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,287 DEBUG Processing 296/537 atomic regions from SNP 88696 to 89296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,468 DEBUG Processing 605/668 atomic regions from SNP 181349 to 181949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,477 DEBUG Processing 297/537 atomic regions from SNP 88996 to 89596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,503 DEBUG Processing 537/603 atomic regions from SNP 160817 to 161417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,666 DEBUG Processing 298/537 atomic regions from SNP 89296 to 89896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,694 DEBUG Processing 606/668 atomic regions from SNP 181649 to 182249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,724 DEBUG Processing 538/603 atomic regions from SNP 161117 to 161717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,855 DEBUG Processing 299/537 atomic regions from SNP 89596 to 90196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,919 DEBUG Processing 607/668 atomic regions from SNP 181949 to 182549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,967 DEBUG Processing 539/603 atomic regions from SNP 161417 to 162017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,047 DEBUG Processing 300/537 atomic regions from SNP 89896 to 90496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,136 DEBUG Processing 608/668 atomic regions from SNP 182249 to 182849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,198 DEBUG Processing 540/603 atomic regions from SNP 161717 to 162317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,239 DEBUG Processing 301/537 atomic regions from SNP 90196 to 90796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,351 DEBUG Processing 609/668 atomic regions from SNP 182549 to 183149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,433 DEBUG Processing 541/603 atomic regions from SNP 162017 to 162617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,435 DEBUG Processing 302/537 atomic regions from SNP 90496 to 91096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,575 DEBUG Processing 610/668 atomic regions from SNP 182849 to 183449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,623 DEBUG Processing 303/537 atomic regions from SNP 90796 to 91396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,648 DEBUG Processing 542/603 atomic regions from SNP 162317 to 162917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,775 DEBUG Subchromosome time: 150.25995147705544, subchromosome SNPs: 170012 2025-01-31 09:55:43,776 DEBUG Estimated BADs: [2.75, 0.69, 2.75, 1.37, 4.12, 0.69, 2.75, 0.69, 1.37, 2.75, 0.69, 0.46, 1.37, 0.34, 0.69, 1.37, 4.12, 2.75] SNP counts: [5013, 4199, 11364, 4309, 3620, 1076, 6633, 8743, 7887, 13159, 20730, 8083, 5367, 9016, 40712, 4901, 8399, 6801] SNP IDs counts: [5013, 4199, 11364, 4309, 3620, 1076, 6633, 8743, 7887, 13159, 20730, 8083, 5367, 9016, 40712, 4901, 8399, 6801] Critical gap: 529122bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.09Mbp], 6.11Mbp, 8.41Mbp, 14.54Mbp, 17.07Mbp, 18.98Mbp, 19.67Mbp, 23.31Mbp, 28.11Mbp, 32.37Mbp, 39.42Mbp, 51.07Mbp, 55.82Mbp, 58.91Mbp, 64.24Mbp, 87.36Mbp, 90.05Mbp, 94.47Mbp, 98.21Mbp] 2025-01-31 09:55:43,776 DEBUG chr16 time: 150.26047008601017 s 2025-01-31 09:55:43,802 DEBUG Processing 611/668 atomic regions from SNP 183149 to 183749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,813 DEBUG Processing 304/537 atomic regions from SNP 91096 to 91696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,867 DEBUG Processing 543/603 atomic regions from SNP 162617 to 163217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,867 DEBUG chr16: Fitting background model for 18 segments 2025-01-31 09:55:44,029 DEBUG Processing 612/668 atomic regions from SNP 183449 to 184049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,032 DEBUG Processing 305/537 atomic regions from SNP 91396 to 91996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,090 DEBUG Processing 544/603 atomic regions from SNP 162917 to 163517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,258 DEBUG Processing 306/537 atomic regions from SNP 91696 to 92296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,272 DEBUG Processing 613/668 atomic regions from SNP 183749 to 184349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,310 DEBUG Processing 545/603 atomic regions from SNP 163217 to 163817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,484 DEBUG Processing 307/537 atomic regions from SNP 91996 to 92596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,534 DEBUG Processing 546/603 atomic regions from SNP 163517 to 164117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,535 DEBUG Processing 614/668 atomic regions from SNP 184049 to 184649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,706 DEBUG Processing 308/537 atomic regions from SNP 92296 to 92896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,759 DEBUG Processing 547/603 atomic regions from SNP 163817 to 164417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,790 DEBUG Processing 615/668 atomic regions from SNP 184349 to 184949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,937 DEBUG Processing 309/537 atomic regions from SNP 92596 to 93196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,985 DEBUG Processing 548/603 atomic regions from SNP 164117 to 164717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,053 DEBUG Processing 616/668 atomic regions from SNP 184649 to 185249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,167 DEBUG Processing 310/537 atomic regions from SNP 92896 to 93496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,182 DEBUG Subchromosome time: 200.87633529107552, subchromosome SNPs: 205354 2025-01-31 09:55:45,183 DEBUG Estimated BADs: [0.74, 1.47, 4.41, 0.74, 8.82, 2.94, 0.49, 1.47, 2.94, 1.47, 4.41, 1.47, 2.94, 0.74, 2.94, 1.47, 2.94, 1.47, 0.49, 1.47, 0.74, 0.49, 1.47, 2.94, 1.47, 0.49, 1.47] SNP counts: [9432, 21643, 1572, 1979, 427, 3558, 3919, 38197, 1123, 8998, 2102, 4662, 5527, 3004, 1880, 13481, 1459, 8088, 3892, 2397, 3974, 9854, 12449, 6857, 26577, 5102, 3201] SNP IDs counts: [9432, 21643, 1572, 1979, 427, 3558, 3919, 38197, 1123, 8998, 2102, 4662, 5527, 3004, 1880, 13481, 1459, 8088, 3892, 2397, 3974, 9854, 12449, 6857, 26577, 5102, 3201] Critical gap: 594614bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.53Mbp, 21.16Mbp, 22.06Mbp, 23.40Mbp, 23.62Mbp, 25.57Mbp, 27.80Mbp, 48.64Mbp, 49.23Mbp, 54.46Mbp, 55.57Mbp, 58.00Mbp, 60.94Mbp, 63.15Mbp, 64.15Mbp, 73.25Mbp, 74.00Mbp, 78.66Mbp, 80.88Mbp, 82.21Mbp, 84.40Mbp, 90.16Mbp, 96.93Mbp, 100.65Mbp, 115.21Mbp, 118.04Mbp, 120.42Mbp] 2025-01-31 09:55:45,183 DEBUG chr13 time: 200.8768057100242 s 2025-01-31 09:55:45,211 DEBUG Processing 549/603 atomic regions from SNP 164417 to 165017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,302 DEBUG Processing 617/668 atomic regions from SNP 184949 to 185549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,308 DEBUG chr13: Fitting background model for 27 segments 2025-01-31 09:55:45,394 DEBUG Processing 311/537 atomic regions from SNP 93196 to 93796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,435 DEBUG Processing 550/603 atomic regions from SNP 164717 to 165317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,544 DEBUG Processing 618/668 atomic regions from SNP 185249 to 185849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,609 DEBUG Processing 312/537 atomic regions from SNP 93496 to 94096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,663 DEBUG Processing 551/603 atomic regions from SNP 165017 to 165617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,789 DEBUG Processing 619/668 atomic regions from SNP 185549 to 186149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,830 DEBUG Processing 313/537 atomic regions from SNP 93796 to 94396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,889 DEBUG Processing 552/603 atomic regions from SNP 165317 to 165917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,025 DEBUG Processing 314/537 atomic regions from SNP 94096 to 94696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,046 DEBUG Processing 620/668 atomic regions from SNP 185849 to 186449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,111 DEBUG Processing 553/603 atomic regions from SNP 165617 to 166217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,217 DEBUG Processing 315/537 atomic regions from SNP 94396 to 94996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,302 DEBUG Processing 621/668 atomic regions from SNP 186149 to 186749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,337 DEBUG Processing 554/603 atomic regions from SNP 165917 to 166517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,432 DEBUG Processing 316/537 atomic regions from SNP 94696 to 95296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,566 DEBUG Processing 622/668 atomic regions from SNP 186449 to 187049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,570 DEBUG Processing 555/603 atomic regions from SNP 166217 to 166817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,623 DEBUG Processing 317/537 atomic regions from SNP 94996 to 95596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,804 DEBUG Processing 556/603 atomic regions from SNP 166517 to 167117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,819 DEBUG Processing 318/537 atomic regions from SNP 95296 to 95896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,830 DEBUG Processing 623/668 atomic regions from SNP 186749 to 187349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,026 DEBUG Processing 319/537 atomic regions from SNP 95596 to 96196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,056 DEBUG Processing 557/603 atomic regions from SNP 166817 to 167417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,115 DEBUG Processing 624/668 atomic regions from SNP 187049 to 187649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,219 DEBUG Processing 320/537 atomic regions from SNP 95896 to 96496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,288 DEBUG Processing 558/603 atomic regions from SNP 167117 to 167717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,393 DEBUG Processing 625/668 atomic regions from SNP 187349 to 187949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,456 DEBUG Processing 321/537 atomic regions from SNP 96196 to 96796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,605 DEBUG Processing 559/603 atomic regions from SNP 167417 to 168017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,690 DEBUG Processing 322/537 atomic regions from SNP 96496 to 97096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,703 DEBUG Processing 626/668 atomic regions from SNP 187649 to 188249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,840 DEBUG Processing 560/603 atomic regions from SNP 167717 to 168317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,881 DEBUG Processing 323/537 atomic regions from SNP 96796 to 97396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,968 DEBUG Processing 627/668 atomic regions from SNP 187949 to 188549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,061 DEBUG Processing 561/603 atomic regions from SNP 168017 to 168617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,078 DEBUG Processing 324/537 atomic regions from SNP 97096 to 97696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,226 DEBUG Processing 628/668 atomic regions from SNP 188249 to 188849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,263 DEBUG Processing 325/537 atomic regions from SNP 97396 to 97996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,269 DEBUG Processing 562/603 atomic regions from SNP 168317 to 168917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,453 DEBUG Processing 326/537 atomic regions from SNP 97696 to 98296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,485 DEBUG Processing 629/668 atomic regions from SNP 188549 to 189149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,486 DEBUG Processing 563/603 atomic regions from SNP 168617 to 169217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,662 DEBUG Processing 327/537 atomic regions from SNP 97996 to 98596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,723 DEBUG Processing 564/603 atomic regions from SNP 168917 to 169517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,764 DEBUG Processing 630/668 atomic regions from SNP 188849 to 189449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,862 DEBUG Processing 328/537 atomic regions from SNP 98296 to 98896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,951 DEBUG Processing 565/603 atomic regions from SNP 169217 to 169817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,028 DEBUG Processing 631/668 atomic regions from SNP 189149 to 189749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,067 DEBUG Processing 329/537 atomic regions from SNP 98596 to 99196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,201 DEBUG Processing 566/603 atomic regions from SNP 169517 to 170117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,297 DEBUG Processing 330/537 atomic regions from SNP 98896 to 99496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,297 DEBUG Processing 632/668 atomic regions from SNP 189449 to 190049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,452 DEBUG Processing 567/603 atomic regions from SNP 169817 to 170417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,502 DEBUG Processing 331/537 atomic regions from SNP 99196 to 99796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,532 DEBUG Processing 633/668 atomic regions from SNP 189749 to 190349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,687 DEBUG Processing 568/603 atomic regions from SNP 170117 to 170717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,715 DEBUG Processing 332/537 atomic regions from SNP 99496 to 100096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,792 DEBUG Processing 634/668 atomic regions from SNP 190049 to 190649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,926 DEBUG Processing 333/537 atomic regions from SNP 99796 to 100396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,959 DEBUG Processing 569/603 atomic regions from SNP 170417 to 171017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,065 DEBUG Processing 635/668 atomic regions from SNP 190349 to 190949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,265 DEBUG Processing 334/537 atomic regions from SNP 100096 to 100696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,291 DEBUG Processing 570/603 atomic regions from SNP 170717 to 171317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,434 DEBUG Processing 636/668 atomic regions from SNP 190649 to 191249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,605 DEBUG Processing 335/537 atomic regions from SNP 100396 to 100996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,710 DEBUG Processing 571/603 atomic regions from SNP 171017 to 171617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,874 DEBUG Processing 637/668 atomic regions from SNP 190949 to 191549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,947 DEBUG Processing 336/537 atomic regions from SNP 100696 to 101296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,151 DEBUG Processing 572/603 atomic regions from SNP 171317 to 171917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,314 DEBUG Processing 638/668 atomic regions from SNP 191249 to 191849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,346 DEBUG Processing 337/537 atomic regions from SNP 100996 to 101596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,503 DEBUG Processing 573/603 atomic regions from SNP 171617 to 172217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,586 DEBUG Processing 639/668 atomic regions from SNP 191549 to 192149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,617 DEBUG Processing 338/537 atomic regions from SNP 101296 to 101896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,822 DEBUG Processing 574/603 atomic regions from SNP 171917 to 172517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,851 DEBUG Processing 339/537 atomic regions from SNP 101596 to 102196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,858 DEBUG Processing 640/668 atomic regions from SNP 191849 to 192449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,085 DEBUG Processing 340/537 atomic regions from SNP 101896 to 102496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,175 DEBUG Processing 575/603 atomic regions from SNP 172217 to 172817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,180 DEBUG Processing 641/668 atomic regions from SNP 192149 to 192749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,352 DEBUG Processing 341/537 atomic regions from SNP 102196 to 102796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,582 DEBUG Processing 576/603 atomic regions from SNP 172517 to 173117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,583 DEBUG Processing 642/668 atomic regions from SNP 192449 to 193049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,698 DEBUG Processing 342/537 atomic regions from SNP 102496 to 103096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,014 DEBUG Processing 643/668 atomic regions from SNP 192749 to 193349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,051 DEBUG Processing 577/603 atomic regions from SNP 172817 to 173417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,091 DEBUG Processing 343/537 atomic regions from SNP 102796 to 103396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,413 DEBUG Processing 644/668 atomic regions from SNP 193049 to 193649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,505 DEBUG Processing 344/537 atomic regions from SNP 103096 to 103696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,551 DEBUG Processing 578/603 atomic regions from SNP 173117 to 173717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,811 DEBUG Processing 345/537 atomic regions from SNP 103396 to 103996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,820 DEBUG Processing 645/668 atomic regions from SNP 193349 to 193949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,875 DEBUG Processing 579/603 atomic regions from SNP 173417 to 174017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,022 DEBUG Processing 346/537 atomic regions from SNP 103696 to 104296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,064 DEBUG Processing 646/668 atomic regions from SNP 193649 to 194249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,136 DEBUG Processing 580/603 atomic regions from SNP 173717 to 174317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,244 DEBUG Processing 347/537 atomic regions from SNP 103996 to 104596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,319 DEBUG Processing 647/668 atomic regions from SNP 193949 to 194549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,395 DEBUG Processing 581/603 atomic regions from SNP 174017 to 174617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,451 DEBUG Processing 348/537 atomic regions from SNP 104296 to 104896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,575 DEBUG Processing 648/668 atomic regions from SNP 194249 to 194849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,745 DEBUG Processing 349/537 atomic regions from SNP 104596 to 105196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,751 DEBUG Processing 582/603 atomic regions from SNP 174317 to 174917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,869 DEBUG Processing 649/668 atomic regions from SNP 194549 to 195149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,972 DEBUG Processing 350/537 atomic regions from SNP 104896 to 105496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,034 DEBUG Processing 583/603 atomic regions from SNP 174617 to 175217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,104 DEBUG Processing 650/668 atomic regions from SNP 194849 to 195449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,173 DEBUG Processing 351/537 atomic regions from SNP 105196 to 105796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,322 DEBUG Processing 584/603 atomic regions from SNP 174917 to 175517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,337 DEBUG Processing 651/668 atomic regions from SNP 195149 to 195749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,384 DEBUG Processing 352/537 atomic regions from SNP 105496 to 106096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,583 DEBUG Processing 353/537 atomic regions from SNP 105796 to 106396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,614 DEBUG Processing 652/668 atomic regions from SNP 195449 to 196049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,636 DEBUG Processing 585/603 atomic regions from SNP 175217 to 175817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,775 DEBUG Processing 354/537 atomic regions from SNP 106096 to 106696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,865 DEBUG Processing 653/668 atomic regions from SNP 195749 to 196349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,881 DEBUG Processing 586/603 atomic regions from SNP 175517 to 176117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,962 DEBUG Processing 355/537 atomic regions from SNP 106396 to 106996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,100 DEBUG Processing 654/668 atomic regions from SNP 196049 to 196649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,103 DEBUG Processing 587/603 atomic regions from SNP 175817 to 176417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,148 DEBUG Processing 356/537 atomic regions from SNP 106696 to 107296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,332 DEBUG Processing 655/668 atomic regions from SNP 196349 to 196949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,339 DEBUG Processing 357/537 atomic regions from SNP 106996 to 107596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,349 DEBUG Processing 588/603 atomic regions from SNP 176117 to 176717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,527 DEBUG Processing 358/537 atomic regions from SNP 107296 to 107896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,556 DEBUG Processing 656/668 atomic regions from SNP 196649 to 197249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,596 DEBUG Processing 589/603 atomic regions from SNP 176417 to 177017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,710 DEBUG Processing 359/537 atomic regions from SNP 107596 to 108196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,774 DEBUG Processing 657/668 atomic regions from SNP 196949 to 197549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,823 DEBUG Processing 590/603 atomic regions from SNP 176717 to 177317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,893 DEBUG Processing 360/537 atomic regions from SNP 107896 to 108496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,993 DEBUG Processing 658/668 atomic regions from SNP 197249 to 197849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,034 DEBUG Processing 591/603 atomic regions from SNP 177017 to 177617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,083 DEBUG Processing 361/537 atomic regions from SNP 108196 to 108796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,212 DEBUG Processing 659/668 atomic regions from SNP 197549 to 198149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,248 DEBUG Processing 592/603 atomic regions from SNP 177317 to 177917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,269 DEBUG Processing 362/537 atomic regions from SNP 108496 to 109096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,453 DEBUG Processing 660/668 atomic regions from SNP 197849 to 198449 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,459 DEBUG Processing 363/537 atomic regions from SNP 108796 to 109396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,478 DEBUG Processing 593/603 atomic regions from SNP 177617 to 178217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,652 DEBUG Processing 364/537 atomic regions from SNP 109096 to 109696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,681 DEBUG Processing 661/668 atomic regions from SNP 198149 to 198749 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,722 DEBUG Processing 594/603 atomic regions from SNP 177917 to 178517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,855 DEBUG Processing 365/537 atomic regions from SNP 109396 to 109996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,914 DEBUG Processing 662/668 atomic regions from SNP 198449 to 199049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,978 DEBUG Processing 595/603 atomic regions from SNP 178217 to 178817 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,051 DEBUG Processing 366/537 atomic regions from SNP 109696 to 110296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,144 DEBUG Processing 663/668 atomic regions from SNP 198749 to 199349 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,227 DEBUG Processing 596/603 atomic regions from SNP 178517 to 179117 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,236 DEBUG Processing 367/537 atomic regions from SNP 109996 to 110596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,371 DEBUG Processing 664/668 atomic regions from SNP 199049 to 199649 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,418 DEBUG Processing 368/537 atomic regions from SNP 110296 to 110896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,469 DEBUG Processing 597/603 atomic regions from SNP 178817 to 179417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,565 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:55:58,600 DEBUG Processing 665/668 atomic regions from SNP 199349 to 199949 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,606 DEBUG Processing 369/537 atomic regions from SNP 110596 to 111196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,706 DEBUG Processing 598/603 atomic regions from SNP 179117 to 179717 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,793 DEBUG Processing 370/537 atomic regions from SNP 110896 to 111496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,828 DEBUG Processing 666/668 atomic regions from SNP 199649 to 200249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,931 DEBUG Processing 599/603 atomic regions from SNP 179417 to 180017 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,980 DEBUG Processing 371/537 atomic regions from SNP 111196 to 111796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,053 DEBUG Processing 667/668 atomic regions from SNP 199949 to 200549 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,164 DEBUG Processing 372/537 atomic regions from SNP 111496 to 112096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,170 DEBUG Processing 600/603 atomic regions from SNP 179717 to 180317 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,277 DEBUG Processing 668/668 atomic regions from SNP 200249 to 200849 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,375 DEBUG Processing 373/537 atomic regions from SNP 111796 to 112396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,430 DEBUG Processing 601/603 atomic regions from SNP 180017 to 180617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,431 DEBUG Unique SNPs positions in subchromosome 1: 200850 2025-01-31 09:55:59,565 DEBUG Processing 374/537 atomic regions from SNP 112096 to 112696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,674 DEBUG Processing 602/603 atomic regions from SNP 180317 to 180917 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,749 DEBUG Processing 375/537 atomic regions from SNP 112396 to 112996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,883 DEBUG Processing 603/603 atomic regions from SNP 180617 to 181217 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,933 DEBUG Processing 376/537 atomic regions from SNP 112696 to 113296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,018 DEBUG Unique SNPs positions in subchromosome 1: 181218 2025-01-31 09:56:00,121 DEBUG Processing 377/537 atomic regions from SNP 112996 to 113596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,303 DEBUG Processing 378/537 atomic regions from SNP 113296 to 113896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,484 DEBUG Processing 379/537 atomic regions from SNP 113596 to 114196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,662 DEBUG Processing 380/537 atomic regions from SNP 113896 to 114496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,849 DEBUG Processing 381/537 atomic regions from SNP 114196 to 114796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,032 DEBUG Processing 382/537 atomic regions from SNP 114496 to 115096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,220 DEBUG Processing 383/537 atomic regions from SNP 114796 to 115396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,494 DEBUG Processing 384/537 atomic regions from SNP 115096 to 115696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,675 DEBUG Processing 385/537 atomic regions from SNP 115396 to 115996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,856 DEBUG Processing 386/537 atomic regions from SNP 115696 to 116296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,040 DEBUG Processing 387/537 atomic regions from SNP 115996 to 116596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,225 DEBUG Processing 388/537 atomic regions from SNP 116296 to 116896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,413 DEBUG Processing 389/537 atomic regions from SNP 116596 to 117196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,607 DEBUG Processing 390/537 atomic regions from SNP 116896 to 117496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,787 DEBUG Processing 391/537 atomic regions from SNP 117196 to 117796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,972 DEBUG Processing 392/537 atomic regions from SNP 117496 to 118096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,156 DEBUG Processing 393/537 atomic regions from SNP 117796 to 118396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,350 DEBUG Processing 394/537 atomic regions from SNP 118096 to 118696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,611 DEBUG Processing 395/537 atomic regions from SNP 118396 to 118996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,872 DEBUG Processing 396/537 atomic regions from SNP 118696 to 119296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,072 DEBUG Processing 397/537 atomic regions from SNP 118996 to 119596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,260 DEBUG Processing 398/537 atomic regions from SNP 119296 to 119896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,459 DEBUG Processing 399/537 atomic regions from SNP 119596 to 120196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,651 DEBUG Processing 400/537 atomic regions from SNP 119896 to 120496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,836 DEBUG Processing 401/537 atomic regions from SNP 120196 to 120796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,019 DEBUG Processing 402/537 atomic regions from SNP 120496 to 121096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,204 DEBUG Processing 403/537 atomic regions from SNP 120796 to 121396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,388 DEBUG Processing 404/537 atomic regions from SNP 121096 to 121696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,571 DEBUG Processing 405/537 atomic regions from SNP 121396 to 121996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,753 DEBUG Processing 406/537 atomic regions from SNP 121696 to 122296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,939 DEBUG Processing 407/537 atomic regions from SNP 121996 to 122596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,128 DEBUG Processing 408/537 atomic regions from SNP 122296 to 122896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,314 DEBUG Processing 409/537 atomic regions from SNP 122596 to 123196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,326 DEBUG Subchromosome time: 172.6898097799858, subchromosome SNPs: 181218 2025-01-31 09:56:06,326 DEBUG Estimated BADs: [0.89, 1.78, 0.59, 3.56, 0.89, 1.78, 3.56, 1.78, 0.89, 0.59, 0.89, 3.56, 0.89, 1.78, 0.89, 3.56, 5.34, 3.56, 1.78, 5.34, 1.78, 5.34, 1.78] SNP counts: [3392, 15323, 23794, 507, 6285, 8705, 1807, 9899, 4196, 11710, 10265, 3836, 7866, 5338, 10556, 5074, 12648, 6518, 5548, 1045, 16830, 9227, 849] SNP IDs counts: [3392, 15323, 23794, 507, 6285, 8705, 1807, 9899, 4196, 11710, 10265, 3836, 7866, 5338, 10556, 5074, 12648, 6518, 5548, 1045, 16830, 9227, 849] Critical gap: 544255bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.10Mbp, 13.62Mbp, 27.31Mbp, 27.59Mbp, 31.12Mbp, 36.08Mbp, 37.04Mbp, 42.59Mbp, 45.01Mbp, 51.70Mbp, 57.50Mbp, 59.53Mbp, 63.99Mbp, 66.97Mbp, 72.88Mbp, 75.65Mbp, 82.39Mbp, 85.88Mbp, 88.80Mbp, 89.35Mbp, 98.50Mbp, 103.36Mbp, 104.04Mbp] 2025-01-31 09:56:06,326 DEBUG chr15 time: 172.6904018879868 s 2025-01-31 09:56:06,426 DEBUG chr15: Fitting background model for 23 segments 2025-01-31 09:56:06,503 DEBUG Processing 410/537 atomic regions from SNP 122896 to 123496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,644 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:56:06,645 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:56:06,677 DEBUG Subchromosome time: 193.92868520400953, subchromosome SNPs: 200850 2025-01-31 09:56:06,677 DEBUG Estimated BADs: [2.48, 0.62, 1.24, 0.31, 1.24, 0.41, 1.24, 0.31, 0.62, 2.48, 1.24, 3.71, 1.24, 2.48, 1.24, 0.31, 1.24, 2.48, 1.24, 3.71, 2.48, 0.41, 1.24] SNP counts: [4374, 17105, 31249, 4814, 5080, 11409, 19213, 6900, 8932, 5187, 8083, 901, 5699, 13501, 8697, 8997, 2998, 12007, 8689, 5115, 1488, 2080, 8332] SNP IDs counts: [4374, 17105, 31249, 4814, 5080, 11409, 19213, 6900, 8932, 5187, 8083, 901, 5699, 13501, 8697, 8997, 2998, 12007, 8689, 5115, 1488, 2080, 8332] Critical gap: 599728bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.44Mbp, 15.17Mbp, 36.53Mbp, 39.25Mbp, 42.27Mbp, 48.94Mbp, 59.92Mbp, 64.01Mbp, 69.12Mbp, 71.87Mbp, 76.23Mbp, 76.71Mbp, 79.84Mbp, 87.04Mbp, 92.27Mbp, 97.51Mbp, 99.19Mbp, 105.78Mbp, 110.39Mbp, 113.06Mbp, 113.93Mbp, 115.20Mbp, 120.13Mbp] 2025-01-31 09:56:06,677 DEBUG chr12 time: 193.92914141295478 s 2025-01-31 09:56:06,688 DEBUG Processing 411/537 atomic regions from SNP 123196 to 123796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,796 DEBUG chr12: Fitting background model for 23 segments 2025-01-31 09:56:06,876 DEBUG Processing 412/537 atomic regions from SNP 123496 to 124096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,065 DEBUG Processing 413/537 atomic regions from SNP 123796 to 124396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,252 DEBUG Processing 414/537 atomic regions from SNP 124096 to 124696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,439 DEBUG Processing 415/537 atomic regions from SNP 124396 to 124996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,630 DEBUG Processing 416/537 atomic regions from SNP 124696 to 125296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,822 DEBUG Processing 417/537 atomic regions from SNP 124996 to 125596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,025 DEBUG Processing 418/537 atomic regions from SNP 125296 to 125896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,219 DEBUG Processing 419/537 atomic regions from SNP 125596 to 126196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,321 DEBUG chrY total SNP count: 136 2025-01-31 09:56:08,321 DEBUG chrY length: 91744698 2025-01-31 09:56:08,321 DEBUG ----------------------------------------- 2025-01-31 09:56:08,322 INFO Processing SNPs in chrY 2025-01-31 09:56:08,323 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 1), (1, 12), (12, 23), (23, 30), (30, 38), (38, 47), (47, 65), (65, 78), (78, 86), (86, 88), (88, 92), (92, 94), (94, 136)] 2025-01-31 09:56:08,323 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [1, 11, 11, 7, 8, 9, 18, 13, 8, 2, 4, 2, 42] SNP IDs counts: [1, 11, 11, 7, 8, 9, 18, 13, 8, 2, 4, 2, 42] Critical gap: 20068bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[0.69Mbp], 0.69Mbp[0.15Mbp], 0.85Mbp[0.03Mbp], 0.88Mbp[1.00Mbp], 1.89Mbp[0.47Mbp], 2.37Mbp[0.39Mbp], 2.76Mbp[1.22Mbp], 4.01Mbp[0.28Mbp], 4.29Mbp[6.41Mbp], 10.71Mbp[12.01Mbp], 22.72Mbp[21.20Mbp], 43.93Mbp[0.51Mbp], 44.45Mbp[46.27Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 09:56:08,323 DEBUG chrY time: 0.0015464599709957838 s 2025-01-31 09:56:08,408 DEBUG Processing 420/537 atomic regions from SNP 125896 to 126496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,598 DEBUG Processing 421/537 atomic regions from SNP 126196 to 126796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,786 DEBUG Processing 422/537 atomic regions from SNP 126496 to 127096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,977 DEBUG Processing 423/537 atomic regions from SNP 126796 to 127396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,168 DEBUG Processing 424/537 atomic regions from SNP 127096 to 127696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,355 DEBUG Processing 425/537 atomic regions from SNP 127396 to 127996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,543 DEBUG Processing 426/537 atomic regions from SNP 127696 to 128296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,735 DEBUG Processing 427/537 atomic regions from SNP 127996 to 128596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,429 DEBUG Processing 428/537 atomic regions from SNP 128296 to 128896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,616 DEBUG Processing 429/537 atomic regions from SNP 128596 to 129196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,857 DEBUG Processing 430/537 atomic regions from SNP 128896 to 129496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,222 DEBUG Processing 431/537 atomic regions from SNP 129196 to 129796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,421 DEBUG Processing 432/537 atomic regions from SNP 129496 to 130096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,617 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:56:11,666 DEBUG Processing 433/537 atomic regions from SNP 129796 to 130396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,862 DEBUG Processing 434/537 atomic regions from SNP 130096 to 130696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,057 DEBUG Processing 435/537 atomic regions from SNP 130396 to 130996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,244 DEBUG Processing 436/537 atomic regions from SNP 130696 to 131296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,435 DEBUG Processing 437/537 atomic regions from SNP 130996 to 131596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,572 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:56:12,624 DEBUG Processing 438/537 atomic regions from SNP 131296 to 131896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,818 DEBUG Processing 439/537 atomic regions from SNP 131596 to 132196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,010 DEBUG Processing 440/537 atomic regions from SNP 131896 to 132496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,203 DEBUG Processing 441/537 atomic regions from SNP 132196 to 132796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,390 DEBUG Processing 442/537 atomic regions from SNP 132496 to 133096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,584 DEBUG Processing 443/537 atomic regions from SNP 132796 to 133396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,774 DEBUG Processing 444/537 atomic regions from SNP 133096 to 133696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,961 DEBUG Processing 445/537 atomic regions from SNP 133396 to 133996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,157 DEBUG Processing 446/537 atomic regions from SNP 133696 to 134296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,393 DEBUG Processing 447/537 atomic regions from SNP 133996 to 134596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,584 DEBUG Processing 448/537 atomic regions from SNP 134296 to 134896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,790 DEBUG Processing 449/537 atomic regions from SNP 134596 to 135196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,004 DEBUG Processing 450/537 atomic regions from SNP 134896 to 135496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,211 DEBUG Processing 451/537 atomic regions from SNP 135196 to 135796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,409 DEBUG Processing 452/537 atomic regions from SNP 135496 to 136096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,603 DEBUG Processing 453/537 atomic regions from SNP 135796 to 136396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,791 DEBUG Processing 454/537 atomic regions from SNP 136096 to 136696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,976 DEBUG Processing 455/537 atomic regions from SNP 136396 to 136996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,160 DEBUG Processing 456/537 atomic regions from SNP 136696 to 137296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,349 DEBUG Processing 457/537 atomic regions from SNP 136996 to 137596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,534 DEBUG Processing 458/537 atomic regions from SNP 137296 to 137896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,722 DEBUG Processing 459/537 atomic regions from SNP 137596 to 138196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,916 DEBUG Processing 460/537 atomic regions from SNP 137896 to 138496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,109 DEBUG Processing 461/537 atomic regions from SNP 138196 to 138796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,300 DEBUG Processing 462/537 atomic regions from SNP 138496 to 139096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,494 DEBUG Processing 463/537 atomic regions from SNP 138796 to 139396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,681 DEBUG Processing 464/537 atomic regions from SNP 139096 to 139696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,870 DEBUG Processing 465/537 atomic regions from SNP 139396 to 139996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,065 DEBUG Processing 466/537 atomic regions from SNP 139696 to 140296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,252 DEBUG Processing 467/537 atomic regions from SNP 139996 to 140596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,440 DEBUG Processing 468/537 atomic regions from SNP 140296 to 140896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,619 DEBUG Processing 469/537 atomic regions from SNP 140596 to 141196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,803 DEBUG Processing 470/537 atomic regions from SNP 140896 to 141496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,998 DEBUG Processing 471/537 atomic regions from SNP 141196 to 141796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,193 DEBUG Processing 472/537 atomic regions from SNP 141496 to 142096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,397 DEBUG Processing 473/537 atomic regions from SNP 141796 to 142396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,605 DEBUG Processing 474/537 atomic regions from SNP 142096 to 142696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,685 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:56:19,686 DEBUG chr19: Signal quantile: 0.991. signal threshold: 13. Best RMSEA: 0.016 2025-01-31 09:56:19,819 DEBUG Processing 475/537 atomic regions from SNP 142396 to 142996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,011 DEBUG Processing 476/537 atomic regions from SNP 142696 to 143296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,195 DEBUG Processing 477/537 atomic regions from SNP 142996 to 143596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,386 DEBUG Processing 478/537 atomic regions from SNP 143296 to 143896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,446 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:56:20,448 DEBUG chr18: Signal quantile: 0.995. signal threshold: 10. Best RMSEA: 0.024 2025-01-31 09:56:20,578 DEBUG Processing 479/537 atomic regions from SNP 143596 to 144196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,760 DEBUG Processing 480/537 atomic regions from SNP 143896 to 144496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,876 DEBUG chr19 total SNP count: 105662 2025-01-31 09:56:20,876 DEBUG chr19 length: 61431566 2025-01-31 09:56:20,876 DEBUG ----------------------------------------- 2025-01-31 09:56:20,876 INFO Processing SNPs in chr19 2025-01-31 09:56:20,943 DEBUG Processing 481/537 atomic regions from SNP 144196 to 144796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,985 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 105662)] 2025-01-31 09:56:21,060 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:21,133 DEBUG Processing 482/537 atomic regions from SNP 144496 to 145096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,317 DEBUG Processing 483/537 atomic regions from SNP 144796 to 145396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,511 DEBUG Processing 484/537 atomic regions from SNP 145096 to 145696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,700 DEBUG Processing 485/537 atomic regions from SNP 145396 to 145996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,885 DEBUG Processing 486/537 atomic regions from SNP 145696 to 146296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,945 DEBUG chr18 total SNP count: 157457 2025-01-31 09:56:21,946 DEBUG chr18 length: 90702639 2025-01-31 09:56:21,946 DEBUG ----------------------------------------- 2025-01-31 09:56:21,946 INFO Processing SNPs in chr18 2025-01-31 09:56:22,073 DEBUG Processing 487/537 atomic regions from SNP 145996 to 146596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,104 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 157457)] 2025-01-31 09:56:22,212 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:22,275 DEBUG Processing 488/537 atomic regions from SNP 146296 to 146896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,479 DEBUG Processing 489/537 atomic regions from SNP 146596 to 147196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,668 DEBUG Processing 490/537 atomic regions from SNP 146896 to 147496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,853 DEBUG Processing 491/537 atomic regions from SNP 147196 to 147796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,045 DEBUG Processing 492/537 atomic regions from SNP 147496 to 148096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,232 DEBUG Processing 493/537 atomic regions from SNP 147796 to 148396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,422 DEBUG Processing 494/537 atomic regions from SNP 148096 to 148696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,629 DEBUG Processing 495/537 atomic regions from SNP 148396 to 148996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,816 DEBUG Processing 496/537 atomic regions from SNP 148696 to 149296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,997 DEBUG Processing 497/537 atomic regions from SNP 148996 to 149596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,177 DEBUG Processing 498/537 atomic regions from SNP 149296 to 149896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,367 DEBUG Processing 499/537 atomic regions from SNP 149596 to 150196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,544 DEBUG Processing 500/537 atomic regions from SNP 149896 to 150496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,728 DEBUG Processing 501/537 atomic regions from SNP 150196 to 150796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,911 DEBUG Processing 502/537 atomic regions from SNP 150496 to 151096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,096 DEBUG Processing 503/537 atomic regions from SNP 150796 to 151396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,284 DEBUG Processing 504/537 atomic regions from SNP 151096 to 151696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,470 DEBUG Processing 505/537 atomic regions from SNP 151396 to 151996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,657 DEBUG Processing 506/537 atomic regions from SNP 151696 to 152296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,843 DEBUG Processing 507/537 atomic regions from SNP 151996 to 152596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,032 DEBUG Processing 508/537 atomic regions from SNP 152296 to 152896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,212 DEBUG Processing 509/537 atomic regions from SNP 152596 to 153196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,394 DEBUG Processing 510/537 atomic regions from SNP 152896 to 153496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,577 DEBUG Processing 511/537 atomic regions from SNP 153196 to 153796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,760 DEBUG Processing 512/537 atomic regions from SNP 153496 to 154096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,941 DEBUG Processing 513/537 atomic regions from SNP 153796 to 154396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,122 DEBUG Processing 514/537 atomic regions from SNP 154096 to 154696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,302 DEBUG Processing 515/537 atomic regions from SNP 154396 to 154996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,482 DEBUG Processing 516/537 atomic regions from SNP 154696 to 155296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,664 DEBUG Processing 517/537 atomic regions from SNP 154996 to 155596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,854 DEBUG Processing 518/537 atomic regions from SNP 155296 to 155896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,040 DEBUG Processing 519/537 atomic regions from SNP 155596 to 156196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,232 DEBUG Processing 520/537 atomic regions from SNP 155896 to 156496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,422 DEBUG Processing 521/537 atomic regions from SNP 156196 to 156796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,611 DEBUG Processing 522/537 atomic regions from SNP 156496 to 157096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,796 DEBUG Processing 523/537 atomic regions from SNP 156796 to 157396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,984 DEBUG Processing 524/537 atomic regions from SNP 157096 to 157696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,169 DEBUG Processing 525/537 atomic regions from SNP 157396 to 157996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,354 DEBUG Processing 526/537 atomic regions from SNP 157696 to 158296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,538 DEBUG Processing 527/537 atomic regions from SNP 157996 to 158596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,722 DEBUG Processing 528/537 atomic regions from SNP 158296 to 158896 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,907 DEBUG Processing 529/537 atomic regions from SNP 158596 to 159196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,092 DEBUG Processing 530/537 atomic regions from SNP 158896 to 159496 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,281 DEBUG Processing 531/537 atomic regions from SNP 159196 to 159796 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,471 DEBUG Processing 532/537 atomic regions from SNP 159496 to 160096 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,657 DEBUG Processing 533/537 atomic regions from SNP 159796 to 160396 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,839 DEBUG Processing 534/537 atomic regions from SNP 160096 to 160696 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,021 DEBUG Processing 535/537 atomic regions from SNP 160396 to 160996 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,205 DEBUG Processing 536/537 atomic regions from SNP 160696 to 161296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,393 DEBUG Processing 537/537 atomic regions from SNP 160996 to 161596 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,511 DEBUG Unique SNPs positions in subchromosome 1: 161597 2025-01-31 09:56:33,917 DEBUG Segmenting atomic regions: 2025-01-31 09:56:33,965 DEBUG Processing 1/351 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,157 DEBUG Processing 2/351 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,340 DEBUG Processing 3/351 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,537 DEBUG Processing 4/351 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,743 DEBUG Processing 5/351 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,953 DEBUG Processing 6/351 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,164 DEBUG Processing 7/351 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,365 DEBUG Processing 8/351 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,560 DEBUG Processing 9/351 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,753 DEBUG Processing 10/351 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,938 DEBUG Processing 11/351 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,126 DEBUG Processing 12/351 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,334 DEBUG Processing 13/351 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,524 DEBUG Processing 14/351 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,732 DEBUG Processing 15/351 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,942 DEBUG Processing 16/351 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,155 DEBUG Processing 17/351 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,368 DEBUG Processing 18/351 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,580 DEBUG Processing 19/351 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,789 DEBUG Processing 20/351 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,855 DEBUG Subchromosome time: 142.16870297398418, subchromosome SNPs: 161597 2025-01-31 09:56:37,855 DEBUG Estimated BADs: [1.48, 0.49, 4.45, 2.96, 0.37, 0.74, 2.96, 1.48, 0.74, 4.45, 0.49, 1.48, 0.37, 1.48, 0.37] SNP counts: [21464, 11760, 11433, 13839, 4487, 9365, 4749, 8096, 6083, 2910, 6297, 26996, 3017, 21303, 9798] SNP IDs counts: [21464, 11760, 11433, 13839, 4487, 9365, 4749, 8096, 6083, 2910, 6297, 26996, 3017, 21303, 9798] Critical gap: 524808bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.08Mbp, 23.53Mbp, 29.56Mbp, 37.28Mbp, 40.05Mbp, 45.43Mbp, 47.92Mbp, 52.26Mbp, 55.93Mbp, 57.50Mbp, 61.17Mbp, 75.96Mbp, 77.67Mbp, 89.20Mbp, 94.99Mbp] 2025-01-31 09:56:37,855 DEBUG chr17 time: 142.16916615900118 s 2025-01-31 09:56:37,937 DEBUG chr17: Fitting background model for 15 segments 2025-01-31 09:56:38,001 DEBUG Processing 21/351 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,207 DEBUG Processing 22/351 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,405 DEBUG Processing 23/351 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,612 DEBUG Processing 24/351 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,818 DEBUG Processing 25/351 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,024 DEBUG Processing 26/351 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,223 DEBUG Processing 27/351 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,411 DEBUG Processing 28/351 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,589 DEBUG Processing 29/351 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,770 DEBUG Processing 30/351 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,948 DEBUG Processing 31/351 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,119 DEBUG Processing 32/351 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,290 DEBUG Processing 33/351 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,497 DEBUG Processing 34/351 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,715 DEBUG Processing 35/351 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,913 DEBUG Processing 36/351 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,962 DEBUG Segmenting atomic regions: 2025-01-31 09:56:41,155 DEBUG Processing 1/523 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,263 DEBUG Processing 37/351 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,337 DEBUG Processing 2/523 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,442 DEBUG Processing 38/351 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,516 DEBUG Processing 3/523 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,618 DEBUG Processing 39/351 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,700 DEBUG Processing 4/523 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,818 DEBUG Processing 40/351 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,888 DEBUG Processing 5/523 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,020 DEBUG Processing 41/351 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,073 DEBUG Processing 6/523 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,226 DEBUG Processing 42/351 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,259 DEBUG Processing 7/523 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,430 DEBUG Processing 43/351 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,445 DEBUG Processing 8/523 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,632 DEBUG Processing 44/351 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,639 DEBUG Processing 9/523 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,834 DEBUG Processing 45/351 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,850 DEBUG Processing 10/523 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,035 DEBUG Processing 46/351 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,049 DEBUG Processing 11/523 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,212 DEBUG Processing 47/351 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,243 DEBUG Processing 12/523 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,388 DEBUG Processing 48/351 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,432 DEBUG Processing 13/523 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,577 DEBUG Processing 49/351 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,637 DEBUG Processing 14/523 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,757 DEBUG Processing 50/351 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,832 DEBUG Processing 15/523 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,942 DEBUG Processing 51/351 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,016 DEBUG Processing 16/523 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,146 DEBUG Processing 52/351 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,207 DEBUG Processing 17/523 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,333 DEBUG Processing 53/351 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,397 DEBUG Processing 18/523 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,549 DEBUG Processing 54/351 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,686 DEBUG Processing 19/523 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,759 DEBUG Processing 55/351 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,864 DEBUG Processing 20/523 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,940 DEBUG Processing 56/351 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,055 DEBUG Processing 21/523 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,150 DEBUG Processing 57/351 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,247 DEBUG Processing 22/523 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,338 DEBUG Processing 58/351 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,435 DEBUG Processing 23/523 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,530 DEBUG Processing 59/351 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,622 DEBUG Processing 24/523 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,718 DEBUG Processing 60/351 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,812 DEBUG Processing 25/523 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,946 DEBUG Processing 61/351 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,037 DEBUG Processing 26/523 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,139 DEBUG Processing 62/351 atomic regions from SNP 18361 to 18961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,229 DEBUG Processing 27/523 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,333 DEBUG Processing 63/351 atomic regions from SNP 18661 to 19261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,412 DEBUG Processing 28/523 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,524 DEBUG Processing 64/351 atomic regions from SNP 18961 to 19561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,603 DEBUG Processing 29/523 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,716 DEBUG Processing 65/351 atomic regions from SNP 19261 to 19861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,794 DEBUG Processing 30/523 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,916 DEBUG Processing 66/351 atomic regions from SNP 19561 to 20161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,991 DEBUG Processing 31/523 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,107 DEBUG Processing 67/351 atomic regions from SNP 19861 to 20461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,187 DEBUG Processing 32/523 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,295 DEBUG Processing 68/351 atomic regions from SNP 20161 to 20761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,378 DEBUG Processing 33/523 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,490 DEBUG Processing 69/351 atomic regions from SNP 20461 to 21061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,568 DEBUG Processing 34/523 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,681 DEBUG Processing 70/351 atomic regions from SNP 20761 to 21361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,756 DEBUG Processing 35/523 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,876 DEBUG Processing 71/351 atomic regions from SNP 21061 to 21661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,944 DEBUG Processing 36/523 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,064 DEBUG Processing 72/351 atomic regions from SNP 21361 to 21961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,130 DEBUG Processing 37/523 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,260 DEBUG Processing 73/351 atomic regions from SNP 21661 to 22261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,327 DEBUG Processing 38/523 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,451 DEBUG Processing 74/351 atomic regions from SNP 21961 to 22561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,523 DEBUG Processing 39/523 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,639 DEBUG Processing 75/351 atomic regions from SNP 22261 to 22861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,710 DEBUG Processing 40/523 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,832 DEBUG Processing 76/351 atomic regions from SNP 22561 to 23161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,895 DEBUG Processing 41/523 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,014 DEBUG Processing 77/351 atomic regions from SNP 22861 to 23461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,085 DEBUG Processing 42/523 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,204 DEBUG Processing 78/351 atomic regions from SNP 23161 to 23761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,278 DEBUG Processing 43/523 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,400 DEBUG Processing 79/351 atomic regions from SNP 23461 to 24061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,464 DEBUG Processing 44/523 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,586 DEBUG Processing 80/351 atomic regions from SNP 23761 to 24361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,654 DEBUG Processing 45/523 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,767 DEBUG Processing 81/351 atomic regions from SNP 24061 to 24661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,842 DEBUG Processing 46/523 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,948 DEBUG Processing 82/351 atomic regions from SNP 24361 to 24961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,030 DEBUG Processing 47/523 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,144 DEBUG Processing 83/351 atomic regions from SNP 24661 to 25261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,217 DEBUG Processing 48/523 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,343 DEBUG Processing 84/351 atomic regions from SNP 24961 to 25561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,407 DEBUG Processing 49/523 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,533 DEBUG Processing 85/351 atomic regions from SNP 25261 to 25861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,601 DEBUG Processing 50/523 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,711 DEBUG Processing 86/351 atomic regions from SNP 25561 to 26161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,789 DEBUG Processing 51/523 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,899 DEBUG Processing 87/351 atomic regions from SNP 25861 to 26461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,977 DEBUG Processing 52/523 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,093 DEBUG Processing 88/351 atomic regions from SNP 26161 to 26761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,161 DEBUG Processing 53/523 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,298 DEBUG Processing 89/351 atomic regions from SNP 26461 to 27061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,353 DEBUG Processing 54/523 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,492 DEBUG Processing 90/351 atomic regions from SNP 26761 to 27361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,542 DEBUG Processing 55/523 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,695 DEBUG Processing 91/351 atomic regions from SNP 27061 to 27661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,738 DEBUG Processing 56/523 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,888 DEBUG Processing 92/351 atomic regions from SNP 27361 to 27961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,931 DEBUG Processing 57/523 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,075 DEBUG Processing 93/351 atomic regions from SNP 27661 to 28261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,121 DEBUG Processing 58/523 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,260 DEBUG Processing 94/351 atomic regions from SNP 27961 to 28561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,305 DEBUG Processing 59/523 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,454 DEBUG Processing 95/351 atomic regions from SNP 28261 to 28861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,490 DEBUG Processing 60/523 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,646 DEBUG Processing 96/351 atomic regions from SNP 28561 to 29161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,683 DEBUG Processing 61/523 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,827 DEBUG Processing 97/351 atomic regions from SNP 28861 to 29461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,865 DEBUG Processing 62/523 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,014 DEBUG Processing 98/351 atomic regions from SNP 29161 to 29761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,045 DEBUG Processing 63/523 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,209 DEBUG Processing 99/351 atomic regions from SNP 29461 to 30061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,224 DEBUG Processing 64/523 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,400 DEBUG Processing 100/351 atomic regions from SNP 29761 to 30361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,408 DEBUG Processing 65/523 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,592 DEBUG Processing 101/351 atomic regions from SNP 30061 to 30661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,598 DEBUG Processing 66/523 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,785 DEBUG Processing 102/351 atomic regions from SNP 30361 to 30961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,790 DEBUG Processing 67/523 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,977 DEBUG Processing 68/523 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,979 DEBUG Processing 103/351 atomic regions from SNP 30661 to 31261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,162 DEBUG Processing 104/351 atomic regions from SNP 30961 to 31561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,163 DEBUG Processing 69/523 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,345 DEBUG Processing 105/351 atomic regions from SNP 31261 to 31861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,352 DEBUG Processing 70/523 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,529 DEBUG Processing 106/351 atomic regions from SNP 31561 to 32161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,538 DEBUG Processing 71/523 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,719 DEBUG Processing 107/351 atomic regions from SNP 31861 to 32461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,724 DEBUG Processing 72/523 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,901 DEBUG Processing 108/351 atomic regions from SNP 32161 to 32761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,901 DEBUG Processing 73/523 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,423 DEBUG Processing 109/351 atomic regions from SNP 32461 to 33061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,440 DEBUG Processing 74/523 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,600 DEBUG Processing 110/351 atomic regions from SNP 32761 to 33361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,622 DEBUG Processing 75/523 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,777 DEBUG Processing 111/351 atomic regions from SNP 33061 to 33661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,807 DEBUG Processing 76/523 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,957 DEBUG Processing 112/351 atomic regions from SNP 33361 to 33961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,994 DEBUG Processing 77/523 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,144 DEBUG Processing 113/351 atomic regions from SNP 33661 to 34261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,176 DEBUG Processing 78/523 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,335 DEBUG Processing 114/351 atomic regions from SNP 33961 to 34561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,358 DEBUG Processing 79/523 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,527 DEBUG Processing 115/351 atomic regions from SNP 34261 to 34861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,542 DEBUG Processing 80/523 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,721 DEBUG Processing 116/351 atomic regions from SNP 34561 to 35161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,734 DEBUG Processing 81/523 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,905 DEBUG Processing 117/351 atomic regions from SNP 34861 to 35461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,919 DEBUG Processing 82/523 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,090 DEBUG Processing 118/351 atomic regions from SNP 35161 to 35761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,105 DEBUG Processing 83/523 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,289 DEBUG Processing 84/523 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,294 DEBUG Processing 119/351 atomic regions from SNP 35461 to 36061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,469 DEBUG Processing 120/351 atomic regions from SNP 35761 to 36361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,470 DEBUG Processing 85/523 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,642 DEBUG Processing 121/351 atomic regions from SNP 36061 to 36661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,656 DEBUG Processing 86/523 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,812 DEBUG Processing 122/351 atomic regions from SNP 36361 to 36961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,834 DEBUG Processing 87/523 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,085 DEBUG Processing 123/351 atomic regions from SNP 36661 to 37261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,269 DEBUG Processing 88/523 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,387 DEBUG Processing 124/351 atomic regions from SNP 36961 to 37561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,476 DEBUG Processing 89/523 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,815 DEBUG Processing 125/351 atomic regions from SNP 37261 to 37861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,870 DEBUG Processing 90/523 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,006 DEBUG Processing 126/351 atomic regions from SNP 37561 to 38161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,056 DEBUG Processing 91/523 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,196 DEBUG Processing 127/351 atomic regions from SNP 37861 to 38461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,244 DEBUG Processing 92/523 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,403 DEBUG Processing 128/351 atomic regions from SNP 38161 to 38761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,433 DEBUG Processing 93/523 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,590 DEBUG Processing 129/351 atomic regions from SNP 38461 to 39061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,616 DEBUG Processing 94/523 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,778 DEBUG Processing 130/351 atomic regions from SNP 38761 to 39361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,799 DEBUG Processing 95/523 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,958 DEBUG Processing 131/351 atomic regions from SNP 39061 to 39661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,977 DEBUG Processing 96/523 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,137 DEBUG Processing 132/351 atomic regions from SNP 39361 to 39961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,154 DEBUG Processing 97/523 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,310 DEBUG Processing 133/351 atomic regions from SNP 39661 to 40261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,331 DEBUG Processing 98/523 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,495 DEBUG Processing 134/351 atomic regions from SNP 39961 to 40561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,514 DEBUG Processing 99/523 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,674 DEBUG Processing 135/351 atomic regions from SNP 40261 to 40861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,691 DEBUG Processing 100/523 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,845 DEBUG Processing 136/351 atomic regions from SNP 40561 to 41161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,868 DEBUG Processing 101/523 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,021 DEBUG Processing 137/351 atomic regions from SNP 40861 to 41461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,047 DEBUG Processing 102/523 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,206 DEBUG Processing 138/351 atomic regions from SNP 41161 to 41761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,226 DEBUG Processing 103/523 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,395 DEBUG Processing 139/351 atomic regions from SNP 41461 to 42061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,418 DEBUG Processing 104/523 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,582 DEBUG Processing 140/351 atomic regions from SNP 41761 to 42361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,611 DEBUG Processing 105/523 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,767 DEBUG Processing 141/351 atomic regions from SNP 42061 to 42661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,810 DEBUG Processing 106/523 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,947 DEBUG Processing 142/351 atomic regions from SNP 42361 to 42961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,001 DEBUG Processing 107/523 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,124 DEBUG Processing 143/351 atomic regions from SNP 42661 to 43261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,188 DEBUG Processing 108/523 atomic regions from SNP 32207 to 32808 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,313 DEBUG Processing 144/351 atomic regions from SNP 42961 to 43561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,376 DEBUG Processing 109/523 atomic regions from SNP 32508 to 33109 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,498 DEBUG Processing 145/351 atomic regions from SNP 43261 to 43861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,558 DEBUG Processing 110/523 atomic regions from SNP 32809 to 33410 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,678 DEBUG Processing 146/351 atomic regions from SNP 43561 to 44161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,742 DEBUG Processing 111/523 atomic regions from SNP 33110 to 33711 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,864 DEBUG Processing 147/351 atomic regions from SNP 43861 to 44461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,937 DEBUG Processing 112/523 atomic regions from SNP 33411 to 34012 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,036 DEBUG Processing 148/351 atomic regions from SNP 44161 to 44761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,116 DEBUG Processing 113/523 atomic regions from SNP 33712 to 34313 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,210 DEBUG Processing 149/351 atomic regions from SNP 44461 to 45061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,294 DEBUG Processing 114/523 atomic regions from SNP 34013 to 34614 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,387 DEBUG Processing 150/351 atomic regions from SNP 44761 to 45361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,473 DEBUG Processing 115/523 atomic regions from SNP 34314 to 34915 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,560 DEBUG Processing 151/351 atomic regions from SNP 45061 to 45661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,657 DEBUG Processing 116/523 atomic regions from SNP 34615 to 35216 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,730 DEBUG Processing 152/351 atomic regions from SNP 45361 to 45961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,840 DEBUG Processing 117/523 atomic regions from SNP 34916 to 35517 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,910 DEBUG Processing 153/351 atomic regions from SNP 45661 to 46261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,023 DEBUG Processing 118/523 atomic regions from SNP 35217 to 35818 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,081 DEBUG Processing 154/351 atomic regions from SNP 45961 to 46561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,204 DEBUG Processing 119/523 atomic regions from SNP 35518 to 36119 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,270 DEBUG Processing 155/351 atomic regions from SNP 46261 to 46861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,384 DEBUG Processing 120/523 atomic regions from SNP 35819 to 36420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,465 DEBUG Processing 156/351 atomic regions from SNP 46561 to 47161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,567 DEBUG Processing 121/523 atomic regions from SNP 36120 to 36721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,635 DEBUG Processing 157/351 atomic regions from SNP 46861 to 47461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,768 DEBUG Processing 122/523 atomic regions from SNP 36421 to 37022 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,814 DEBUG Processing 158/351 atomic regions from SNP 47161 to 47761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,963 DEBUG Processing 123/523 atomic regions from SNP 36722 to 37323 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,991 DEBUG Processing 159/351 atomic regions from SNP 47461 to 48061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,168 DEBUG Processing 124/523 atomic regions from SNP 37023 to 37624 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,174 DEBUG Processing 160/351 atomic regions from SNP 47761 to 48361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,348 DEBUG Processing 161/351 atomic regions from SNP 48061 to 48661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,374 DEBUG Processing 125/523 atomic regions from SNP 37324 to 37925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,524 DEBUG Processing 162/351 atomic regions from SNP 48361 to 48961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,575 DEBUG Processing 126/523 atomic regions from SNP 37625 to 38226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,694 DEBUG Processing 163/351 atomic regions from SNP 48661 to 49261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,769 DEBUG Processing 127/523 atomic regions from SNP 37926 to 38527 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,870 DEBUG Processing 164/351 atomic regions from SNP 48961 to 49561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,964 DEBUG Processing 128/523 atomic regions from SNP 38227 to 38828 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,047 DEBUG Processing 165/351 atomic regions from SNP 49261 to 49861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,155 DEBUG Processing 129/523 atomic regions from SNP 38528 to 39129 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,217 DEBUG Processing 166/351 atomic regions from SNP 49561 to 50161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,356 DEBUG Processing 130/523 atomic regions from SNP 38829 to 39430 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,385 DEBUG Processing 167/351 atomic regions from SNP 49861 to 50461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,546 DEBUG Processing 131/523 atomic regions from SNP 39130 to 39731 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,561 DEBUG Processing 168/351 atomic regions from SNP 50161 to 50761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,735 DEBUG Processing 132/523 atomic regions from SNP 39431 to 40032 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,750 DEBUG Processing 169/351 atomic regions from SNP 50461 to 51061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,940 DEBUG Processing 170/351 atomic regions from SNP 50761 to 51361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,942 DEBUG Processing 133/523 atomic regions from SNP 39732 to 40333 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,129 DEBUG Processing 171/351 atomic regions from SNP 51061 to 51661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:07,137 DEBUG Processing 134/523 atomic regions from SNP 40033 to 40634 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,313 DEBUG Processing 172/351 atomic regions from SNP 51361 to 51961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:07,326 DEBUG Processing 135/523 atomic regions from SNP 40334 to 40935 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,486 DEBUG Processing 173/351 atomic regions from SNP 51661 to 52261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:07,511 DEBUG Processing 136/523 atomic regions from SNP 40635 to 41236 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,024 DEBUG Processing 174/351 atomic regions from SNP 51961 to 52561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,051 DEBUG Processing 137/523 atomic regions from SNP 40936 to 41537 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,264 DEBUG Processing 175/351 atomic regions from SNP 52261 to 52861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,299 DEBUG Processing 138/523 atomic regions from SNP 41237 to 41838 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,450 DEBUG Processing 176/351 atomic regions from SNP 52561 to 53161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,484 DEBUG Processing 139/523 atomic regions from SNP 41538 to 42139 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,636 DEBUG Processing 177/351 atomic regions from SNP 52861 to 53461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,673 DEBUG Processing 140/523 atomic regions from SNP 41839 to 42440 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,825 DEBUG Processing 178/351 atomic regions from SNP 53161 to 53761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,863 DEBUG Processing 141/523 atomic regions from SNP 42140 to 42741 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,086 DEBUG Processing 179/351 atomic regions from SNP 53461 to 54061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,116 DEBUG Processing 142/523 atomic regions from SNP 42441 to 43042 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,270 DEBUG Processing 180/351 atomic regions from SNP 53761 to 54361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,303 DEBUG Processing 143/523 atomic regions from SNP 42742 to 43343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,447 DEBUG Processing 181/351 atomic regions from SNP 54061 to 54661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,492 DEBUG Processing 144/523 atomic regions from SNP 43043 to 43644 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,636 DEBUG Processing 182/351 atomic regions from SNP 54361 to 54961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,682 DEBUG Processing 145/523 atomic regions from SNP 43344 to 43945 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,825 DEBUG Processing 183/351 atomic regions from SNP 54661 to 55261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,878 DEBUG Processing 146/523 atomic regions from SNP 43645 to 44246 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,004 DEBUG Processing 184/351 atomic regions from SNP 54961 to 55561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,067 DEBUG Processing 147/523 atomic regions from SNP 43946 to 44547 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,187 DEBUG Processing 185/351 atomic regions from SNP 55261 to 55861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,254 DEBUG Processing 148/523 atomic regions from SNP 44247 to 44848 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,357 DEBUG Processing 186/351 atomic regions from SNP 55561 to 56161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,433 DEBUG Processing 149/523 atomic regions from SNP 44548 to 45149 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,527 DEBUG Processing 187/351 atomic regions from SNP 55861 to 56461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,607 DEBUG Processing 150/523 atomic regions from SNP 44849 to 45450 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,699 DEBUG Processing 188/351 atomic regions from SNP 56161 to 56761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,783 DEBUG Processing 151/523 atomic regions from SNP 45150 to 45751 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,865 DEBUG Processing 189/351 atomic regions from SNP 56461 to 57061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,965 DEBUG Processing 152/523 atomic regions from SNP 45451 to 46052 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,030 DEBUG Processing 190/351 atomic regions from SNP 56761 to 57361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,150 DEBUG Processing 153/523 atomic regions from SNP 45752 to 46353 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,192 DEBUG Processing 191/351 atomic regions from SNP 57061 to 57661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,334 DEBUG Processing 154/523 atomic regions from SNP 46053 to 46654 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,362 DEBUG Processing 192/351 atomic regions from SNP 57361 to 57961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,510 DEBUG Processing 155/523 atomic regions from SNP 46354 to 46955 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,531 DEBUG Processing 193/351 atomic regions from SNP 57661 to 58261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,686 DEBUG Processing 156/523 atomic regions from SNP 46655 to 47256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,702 DEBUG Processing 194/351 atomic regions from SNP 57961 to 58561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,872 DEBUG Processing 157/523 atomic regions from SNP 46956 to 47557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,873 DEBUG Processing 195/351 atomic regions from SNP 58261 to 58861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,052 DEBUG Processing 196/351 atomic regions from SNP 58561 to 59161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,055 DEBUG Processing 158/523 atomic regions from SNP 47257 to 47858 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,227 DEBUG Processing 197/351 atomic regions from SNP 58861 to 59461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,233 DEBUG Processing 159/523 atomic regions from SNP 47558 to 48159 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,399 DEBUG Processing 198/351 atomic regions from SNP 59161 to 59761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,412 DEBUG Processing 160/523 atomic regions from SNP 47859 to 48460 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,568 DEBUG Processing 199/351 atomic regions from SNP 59461 to 60061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,590 DEBUG Processing 161/523 atomic regions from SNP 48160 to 48761 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,735 DEBUG Processing 200/351 atomic regions from SNP 59761 to 60361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,768 DEBUG Processing 162/523 atomic regions from SNP 48461 to 49062 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,898 DEBUG Processing 201/351 atomic regions from SNP 60061 to 60661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,941 DEBUG Processing 163/523 atomic regions from SNP 48762 to 49363 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,074 DEBUG Processing 202/351 atomic regions from SNP 60361 to 60961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,121 DEBUG Processing 164/523 atomic regions from SNP 49063 to 49664 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,249 DEBUG Processing 203/351 atomic regions from SNP 60661 to 61261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,302 DEBUG Processing 165/523 atomic regions from SNP 49364 to 49965 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,424 DEBUG Processing 204/351 atomic regions from SNP 60961 to 61561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,480 DEBUG Processing 166/523 atomic regions from SNP 49665 to 50266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,609 DEBUG Processing 205/351 atomic regions from SNP 61261 to 61861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,658 DEBUG Processing 167/523 atomic regions from SNP 49966 to 50567 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,788 DEBUG Processing 206/351 atomic regions from SNP 61561 to 62161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,836 DEBUG Processing 168/523 atomic regions from SNP 50267 to 50868 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,964 DEBUG Processing 207/351 atomic regions from SNP 61861 to 62461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,012 DEBUG Processing 169/523 atomic regions from SNP 50568 to 51169 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,147 DEBUG Processing 208/351 atomic regions from SNP 62161 to 62761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,219 DEBUG Processing 170/523 atomic regions from SNP 50869 to 51470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,313 DEBUG Processing 209/351 atomic regions from SNP 62461 to 63061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,420 DEBUG Processing 171/523 atomic regions from SNP 51170 to 51771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,478 DEBUG Processing 210/351 atomic regions from SNP 62761 to 63361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,615 DEBUG Processing 172/523 atomic regions from SNP 51471 to 52072 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,646 DEBUG Processing 211/351 atomic regions from SNP 63061 to 63661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,800 DEBUG Processing 173/523 atomic regions from SNP 51772 to 52373 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,826 DEBUG Processing 212/351 atomic regions from SNP 63361 to 63961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,979 DEBUG Processing 174/523 atomic regions from SNP 52073 to 52674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,005 DEBUG Processing 213/351 atomic regions from SNP 63661 to 64261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,158 DEBUG Processing 175/523 atomic regions from SNP 52374 to 52975 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,176 DEBUG Processing 214/351 atomic regions from SNP 63961 to 64561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,349 DEBUG Processing 176/523 atomic regions from SNP 52675 to 53276 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,363 DEBUG Processing 215/351 atomic regions from SNP 64261 to 64861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,547 DEBUG Processing 216/351 atomic regions from SNP 64561 to 65161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,562 DEBUG Processing 177/523 atomic regions from SNP 52976 to 53577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,723 DEBUG Processing 217/351 atomic regions from SNP 64861 to 65461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,748 DEBUG Processing 178/523 atomic regions from SNP 53277 to 53878 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,905 DEBUG Processing 218/351 atomic regions from SNP 65161 to 65761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,929 DEBUG Processing 179/523 atomic regions from SNP 53578 to 54179 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,084 DEBUG Processing 219/351 atomic regions from SNP 65461 to 66061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,111 DEBUG Processing 180/523 atomic regions from SNP 53879 to 54480 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,272 DEBUG Processing 220/351 atomic regions from SNP 65761 to 66361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,289 DEBUG Processing 181/523 atomic regions from SNP 54180 to 54781 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,455 DEBUG Processing 221/351 atomic regions from SNP 66061 to 66661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,473 DEBUG Processing 182/523 atomic regions from SNP 54481 to 55082 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,626 DEBUG Processing 222/351 atomic regions from SNP 66361 to 66961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,661 DEBUG Processing 183/523 atomic regions from SNP 54782 to 55383 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,799 DEBUG Processing 223/351 atomic regions from SNP 66661 to 67261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,850 DEBUG Processing 184/523 atomic regions from SNP 55083 to 55684 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,989 DEBUG Processing 224/351 atomic regions from SNP 66961 to 67561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,054 DEBUG Processing 185/523 atomic regions from SNP 55384 to 55985 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,202 DEBUG Processing 225/351 atomic regions from SNP 67261 to 67861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,420 DEBUG Processing 186/523 atomic regions from SNP 55685 to 56286 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,458 DEBUG Processing 226/351 atomic regions from SNP 67561 to 68161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,650 DEBUG Processing 187/523 atomic regions from SNP 55986 to 56587 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,655 DEBUG Processing 227/351 atomic regions from SNP 67861 to 68461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,832 DEBUG Processing 228/351 atomic regions from SNP 68161 to 68761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,866 DEBUG Processing 188/523 atomic regions from SNP 56287 to 56888 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,996 DEBUG Processing 229/351 atomic regions from SNP 68461 to 69061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,073 DEBUG Processing 189/523 atomic regions from SNP 56588 to 57189 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,159 DEBUG Processing 230/351 atomic regions from SNP 68761 to 69361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,272 DEBUG Processing 190/523 atomic regions from SNP 56889 to 57490 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,347 DEBUG Processing 231/351 atomic regions from SNP 69061 to 69661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,461 DEBUG Processing 191/523 atomic regions from SNP 57190 to 57791 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,551 DEBUG Processing 232/351 atomic regions from SNP 69361 to 69961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,639 DEBUG Processing 192/523 atomic regions from SNP 57491 to 58092 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,753 DEBUG Processing 233/351 atomic regions from SNP 69661 to 70261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,830 DEBUG Processing 193/523 atomic regions from SNP 57792 to 58393 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,998 DEBUG Processing 234/351 atomic regions from SNP 69961 to 70561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,177 DEBUG Processing 194/523 atomic regions from SNP 58093 to 58694 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,285 DEBUG Processing 235/351 atomic regions from SNP 70261 to 70861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,420 DEBUG Processing 195/523 atomic regions from SNP 58394 to 58995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,464 DEBUG Processing 236/351 atomic regions from SNP 70561 to 71161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,631 DEBUG Processing 196/523 atomic regions from SNP 58695 to 59296 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,645 DEBUG Processing 237/351 atomic regions from SNP 70861 to 71461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,836 DEBUG Processing 238/351 atomic regions from SNP 71161 to 71761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,837 DEBUG Processing 197/523 atomic regions from SNP 58996 to 59597 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,006 DEBUG Processing 239/351 atomic regions from SNP 71461 to 72061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,044 DEBUG Processing 198/523 atomic regions from SNP 59297 to 59898 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,182 DEBUG Processing 240/351 atomic regions from SNP 71761 to 72361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,250 DEBUG Processing 199/523 atomic regions from SNP 59598 to 60199 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,358 DEBUG Processing 241/351 atomic regions from SNP 72061 to 72661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,454 DEBUG Processing 200/523 atomic regions from SNP 59899 to 60500 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,526 DEBUG Processing 242/351 atomic regions from SNP 72361 to 72961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,658 DEBUG Processing 201/523 atomic regions from SNP 60200 to 60801 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,709 DEBUG Processing 243/351 atomic regions from SNP 72661 to 73261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,840 DEBUG Processing 202/523 atomic regions from SNP 60501 to 61102 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,892 DEBUG Processing 244/351 atomic regions from SNP 72961 to 73561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,015 DEBUG Processing 203/523 atomic regions from SNP 60802 to 61403 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,058 DEBUG Processing 245/351 atomic regions from SNP 73261 to 73861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,186 DEBUG Processing 204/523 atomic regions from SNP 61103 to 61704 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,229 DEBUG Processing 246/351 atomic regions from SNP 73561 to 74161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,358 DEBUG Processing 205/523 atomic regions from SNP 61404 to 62005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,422 DEBUG Processing 247/351 atomic regions from SNP 73861 to 74461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,554 DEBUG Processing 206/523 atomic regions from SNP 61705 to 62306 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,652 DEBUG Processing 248/351 atomic regions from SNP 74161 to 74761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,749 DEBUG Processing 207/523 atomic regions from SNP 62006 to 62607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,850 DEBUG Processing 249/351 atomic regions from SNP 74461 to 75061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,950 DEBUG Processing 208/523 atomic regions from SNP 62307 to 62908 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,042 DEBUG Processing 250/351 atomic regions from SNP 74761 to 75361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,149 DEBUG Processing 209/523 atomic regions from SNP 62608 to 63209 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,227 DEBUG Processing 251/351 atomic regions from SNP 75061 to 75661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,351 DEBUG Processing 210/523 atomic regions from SNP 62909 to 63510 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,433 DEBUG Processing 252/351 atomic regions from SNP 75361 to 75961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,545 DEBUG Processing 211/523 atomic regions from SNP 63210 to 63811 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,629 DEBUG Processing 253/351 atomic regions from SNP 75661 to 76261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,732 DEBUG Processing 212/523 atomic regions from SNP 63511 to 64112 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,806 DEBUG Processing 254/351 atomic regions from SNP 75961 to 76561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,911 DEBUG Processing 213/523 atomic regions from SNP 63812 to 64413 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,990 DEBUG Processing 255/351 atomic regions from SNP 76261 to 76861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,089 DEBUG Processing 214/523 atomic regions from SNP 64113 to 64714 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,186 DEBUG Processing 256/351 atomic regions from SNP 76561 to 77161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,263 DEBUG Processing 215/523 atomic regions from SNP 64414 to 65015 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,379 DEBUG Processing 257/351 atomic regions from SNP 76861 to 77461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,440 DEBUG Processing 216/523 atomic regions from SNP 64715 to 65316 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,566 DEBUG Processing 258/351 atomic regions from SNP 77161 to 77761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,628 DEBUG Processing 217/523 atomic regions from SNP 65016 to 65617 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,756 DEBUG Processing 259/351 atomic regions from SNP 77461 to 78061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,810 DEBUG Processing 218/523 atomic regions from SNP 65317 to 65918 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,944 DEBUG Processing 260/351 atomic regions from SNP 77761 to 78361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,985 DEBUG Processing 219/523 atomic regions from SNP 65618 to 66219 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,148 DEBUG Processing 261/351 atomic regions from SNP 78061 to 78661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,155 DEBUG Processing 220/523 atomic regions from SNP 65919 to 66520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,334 DEBUG Processing 221/523 atomic regions from SNP 66220 to 66821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,353 DEBUG Processing 262/351 atomic regions from SNP 78361 to 78961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,514 DEBUG Processing 222/523 atomic regions from SNP 66521 to 67122 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,548 DEBUG Processing 263/351 atomic regions from SNP 78661 to 79261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,690 DEBUG Processing 223/523 atomic regions from SNP 66822 to 67423 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,740 DEBUG Processing 264/351 atomic regions from SNP 78961 to 79561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,861 DEBUG Processing 224/523 atomic regions from SNP 67123 to 67724 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,937 DEBUG Processing 265/351 atomic regions from SNP 79261 to 79861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,034 DEBUG Processing 225/523 atomic regions from SNP 67424 to 68025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,128 DEBUG Processing 266/351 atomic regions from SNP 79561 to 80161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,209 DEBUG Processing 226/523 atomic regions from SNP 67725 to 68326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,315 DEBUG Processing 267/351 atomic regions from SNP 79861 to 80461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,388 DEBUG Processing 227/523 atomic regions from SNP 68026 to 68627 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,484 DEBUG Processing 268/351 atomic regions from SNP 80161 to 80761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,562 DEBUG Processing 228/523 atomic regions from SNP 68327 to 68928 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,659 DEBUG Processing 269/351 atomic regions from SNP 80461 to 81061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,738 DEBUG Processing 229/523 atomic regions from SNP 68628 to 69229 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,831 DEBUG Processing 270/351 atomic regions from SNP 80761 to 81361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,911 DEBUG Processing 230/523 atomic regions from SNP 68929 to 69530 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,002 DEBUG Processing 271/351 atomic regions from SNP 81061 to 81661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,088 DEBUG Processing 231/523 atomic regions from SNP 69230 to 69831 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,166 DEBUG Processing 272/351 atomic regions from SNP 81361 to 81961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,258 DEBUG Processing 232/523 atomic regions from SNP 69531 to 70132 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,326 DEBUG Processing 273/351 atomic regions from SNP 81661 to 82261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,434 DEBUG Processing 233/523 atomic regions from SNP 69832 to 70433 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,485 DEBUG Processing 274/351 atomic regions from SNP 81961 to 82561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,608 DEBUG Processing 234/523 atomic regions from SNP 70133 to 70734 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,644 DEBUG Processing 275/351 atomic regions from SNP 82261 to 82861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,785 DEBUG Processing 235/523 atomic regions from SNP 70434 to 71035 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,803 DEBUG Processing 276/351 atomic regions from SNP 82561 to 83161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,966 DEBUG Processing 277/351 atomic regions from SNP 82861 to 83461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,969 DEBUG Processing 236/523 atomic regions from SNP 70735 to 71336 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,128 DEBUG Processing 278/351 atomic regions from SNP 83161 to 83761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,143 DEBUG Processing 237/523 atomic regions from SNP 71036 to 71637 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,292 DEBUG Processing 279/351 atomic regions from SNP 83461 to 84061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,318 DEBUG Processing 238/523 atomic regions from SNP 71337 to 71938 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,457 DEBUG Processing 280/351 atomic regions from SNP 83761 to 84361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,491 DEBUG Processing 239/523 atomic regions from SNP 71638 to 72239 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,622 DEBUG Processing 281/351 atomic regions from SNP 84061 to 84661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,662 DEBUG Processing 240/523 atomic regions from SNP 71939 to 72540 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,789 DEBUG Processing 282/351 atomic regions from SNP 84361 to 84961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,845 DEBUG Processing 241/523 atomic regions from SNP 72240 to 72841 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,952 DEBUG Processing 283/351 atomic regions from SNP 84661 to 85261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,017 DEBUG Processing 242/523 atomic regions from SNP 72541 to 73142 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,114 DEBUG Processing 284/351 atomic regions from SNP 84961 to 85561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,190 DEBUG Processing 243/523 atomic regions from SNP 72842 to 73443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,277 DEBUG Processing 285/351 atomic regions from SNP 85261 to 85861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,372 DEBUG Processing 244/523 atomic regions from SNP 73143 to 73744 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,443 DEBUG Processing 286/351 atomic regions from SNP 85561 to 86161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,547 DEBUG Processing 245/523 atomic regions from SNP 73444 to 74045 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,609 DEBUG Processing 287/351 atomic regions from SNP 85861 to 86461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,722 DEBUG Processing 246/523 atomic regions from SNP 73745 to 74346 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,783 DEBUG Processing 288/351 atomic regions from SNP 86161 to 86761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,894 DEBUG Processing 247/523 atomic regions from SNP 74046 to 74647 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,959 DEBUG Processing 289/351 atomic regions from SNP 86461 to 87061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,068 DEBUG Processing 248/523 atomic regions from SNP 74347 to 74948 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,132 DEBUG Processing 290/351 atomic regions from SNP 86761 to 87361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,243 DEBUG Processing 249/523 atomic regions from SNP 74648 to 75249 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,300 DEBUG Processing 291/351 atomic regions from SNP 87061 to 87661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,420 DEBUG Processing 250/523 atomic regions from SNP 74949 to 75550 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,473 DEBUG Processing 292/351 atomic regions from SNP 87361 to 87961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,593 DEBUG Processing 251/523 atomic regions from SNP 75250 to 75851 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,646 DEBUG Processing 293/351 atomic regions from SNP 87661 to 88261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,765 DEBUG Processing 252/523 atomic regions from SNP 75551 to 76152 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,823 DEBUG Processing 294/351 atomic regions from SNP 87961 to 88561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,946 DEBUG Processing 253/523 atomic regions from SNP 75852 to 76453 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,002 DEBUG Processing 295/351 atomic regions from SNP 88261 to 88861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,126 DEBUG Processing 254/523 atomic regions from SNP 76153 to 76754 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,179 DEBUG Processing 296/351 atomic regions from SNP 88561 to 89161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,309 DEBUG Processing 255/523 atomic regions from SNP 76454 to 77055 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,370 DEBUG Processing 297/351 atomic regions from SNP 88861 to 89461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,491 DEBUG Processing 256/523 atomic regions from SNP 76755 to 77356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,550 DEBUG Processing 298/351 atomic regions from SNP 89161 to 89761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,666 DEBUG Processing 257/523 atomic regions from SNP 77056 to 77656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,725 DEBUG Processing 299/351 atomic regions from SNP 89461 to 90061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,841 DEBUG Processing 258/523 atomic regions from SNP 77356 to 77956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,892 DEBUG Processing 300/351 atomic regions from SNP 89761 to 90361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,025 DEBUG Processing 259/523 atomic regions from SNP 77656 to 78256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,062 DEBUG Processing 301/351 atomic regions from SNP 90061 to 90661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,215 DEBUG Processing 260/523 atomic regions from SNP 77956 to 78556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,253 DEBUG Processing 302/351 atomic regions from SNP 90361 to 90961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,396 DEBUG Processing 261/523 atomic regions from SNP 78256 to 78856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,456 DEBUG Processing 303/351 atomic regions from SNP 90661 to 91261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,572 DEBUG Processing 262/523 atomic regions from SNP 78556 to 79156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,640 DEBUG Processing 304/351 atomic regions from SNP 90961 to 91561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,750 DEBUG Processing 263/523 atomic regions from SNP 78856 to 79456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,820 DEBUG Processing 305/351 atomic regions from SNP 91261 to 91861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,935 DEBUG Processing 264/523 atomic regions from SNP 79156 to 79756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,016 DEBUG Processing 306/351 atomic regions from SNP 91561 to 92161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,121 DEBUG Processing 265/523 atomic regions from SNP 79456 to 80056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,203 DEBUG Processing 307/351 atomic regions from SNP 91861 to 92461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,296 DEBUG Processing 266/523 atomic regions from SNP 79756 to 80356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,378 DEBUG Processing 308/351 atomic regions from SNP 92161 to 92761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,472 DEBUG Processing 267/523 atomic regions from SNP 80056 to 80656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,547 DEBUG Processing 309/351 atomic regions from SNP 92461 to 93061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,642 DEBUG Processing 268/523 atomic regions from SNP 80356 to 80956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,714 DEBUG Processing 310/351 atomic regions from SNP 92761 to 93361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,815 DEBUG Processing 269/523 atomic regions from SNP 80656 to 81256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,878 DEBUG Processing 311/351 atomic regions from SNP 93061 to 93661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,992 DEBUG Processing 270/523 atomic regions from SNP 80956 to 81556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,048 DEBUG Processing 312/351 atomic regions from SNP 93361 to 93961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:33,167 DEBUG Processing 271/523 atomic regions from SNP 81256 to 81856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,218 DEBUG Processing 313/351 atomic regions from SNP 93661 to 94261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:33,343 DEBUG Processing 272/523 atomic regions from SNP 81556 to 82156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,391 DEBUG Processing 314/351 atomic regions from SNP 93961 to 94561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:33,517 DEBUG Processing 273/523 atomic regions from SNP 81856 to 82456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,563 DEBUG Processing 315/351 atomic regions from SNP 94261 to 94861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:33,695 DEBUG Processing 274/523 atomic regions from SNP 82156 to 82756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,727 DEBUG Processing 316/351 atomic regions from SNP 94561 to 95161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:33,872 DEBUG Processing 275/523 atomic regions from SNP 82456 to 83056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,894 DEBUG Processing 317/351 atomic regions from SNP 94861 to 95461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,044 DEBUG Processing 276/523 atomic regions from SNP 82756 to 83356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,064 DEBUG Processing 318/351 atomic regions from SNP 95161 to 95761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,215 DEBUG Processing 277/523 atomic regions from SNP 83056 to 83656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,233 DEBUG Processing 319/351 atomic regions from SNP 95461 to 96061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,386 DEBUG Processing 278/523 atomic regions from SNP 83356 to 83956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,397 DEBUG Processing 320/351 atomic regions from SNP 95761 to 96361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,556 DEBUG Processing 321/351 atomic regions from SNP 96061 to 96661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,571 DEBUG Processing 279/523 atomic regions from SNP 83656 to 84256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,740 DEBUG Processing 322/351 atomic regions from SNP 96361 to 96961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,748 DEBUG Processing 280/523 atomic regions from SNP 83956 to 84556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,913 DEBUG Processing 323/351 atomic regions from SNP 96661 to 97261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,941 DEBUG Processing 281/523 atomic regions from SNP 84256 to 84856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,090 DEBUG Processing 324/351 atomic regions from SNP 96961 to 97561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,112 DEBUG Processing 282/523 atomic regions from SNP 84556 to 85156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,262 DEBUG Processing 325/351 atomic regions from SNP 97261 to 97861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,281 DEBUG Processing 283/523 atomic regions from SNP 84856 to 85456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,437 DEBUG Processing 326/351 atomic regions from SNP 97561 to 98161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,453 DEBUG Processing 284/523 atomic regions from SNP 85156 to 85756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,605 DEBUG Processing 327/351 atomic regions from SNP 97861 to 98461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,625 DEBUG Processing 285/523 atomic regions from SNP 85456 to 86056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,774 DEBUG Processing 328/351 atomic regions from SNP 98161 to 98761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,797 DEBUG Processing 286/523 atomic regions from SNP 85756 to 86356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,942 DEBUG Processing 329/351 atomic regions from SNP 98461 to 99061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,968 DEBUG Processing 287/523 atomic regions from SNP 86056 to 86656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,107 DEBUG Processing 330/351 atomic regions from SNP 98761 to 99361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,137 DEBUG Processing 288/523 atomic regions from SNP 86356 to 86956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,274 DEBUG Processing 331/351 atomic regions from SNP 99061 to 99661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,305 DEBUG Processing 289/523 atomic regions from SNP 86656 to 87256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,435 DEBUG Processing 332/351 atomic regions from SNP 99361 to 99961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,475 DEBUG Processing 290/523 atomic regions from SNP 86956 to 87556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,596 DEBUG Processing 333/351 atomic regions from SNP 99661 to 100261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,643 DEBUG Processing 291/523 atomic regions from SNP 87256 to 87856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,757 DEBUG Processing 334/351 atomic regions from SNP 99961 to 100561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,810 DEBUG Processing 292/523 atomic regions from SNP 87556 to 88156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,931 DEBUG Processing 335/351 atomic regions from SNP 100261 to 100861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,981 DEBUG Processing 293/523 atomic regions from SNP 87856 to 88456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,102 DEBUG Processing 336/351 atomic regions from SNP 100561 to 101161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,153 DEBUG Processing 294/523 atomic regions from SNP 88156 to 88756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,268 DEBUG Processing 337/351 atomic regions from SNP 100861 to 101461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,323 DEBUG Processing 295/523 atomic regions from SNP 88456 to 89056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,437 DEBUG Processing 338/351 atomic regions from SNP 101161 to 101761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,494 DEBUG Processing 296/523 atomic regions from SNP 88756 to 89356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,609 DEBUG Processing 339/351 atomic regions from SNP 101461 to 102061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,665 DEBUG Processing 297/523 atomic regions from SNP 89056 to 89656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,787 DEBUG Processing 340/351 atomic regions from SNP 101761 to 102361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,841 DEBUG Processing 298/523 atomic regions from SNP 89356 to 89956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,962 DEBUG Processing 341/351 atomic regions from SNP 102061 to 102661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,018 DEBUG Processing 299/523 atomic regions from SNP 89656 to 90256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,133 DEBUG Processing 342/351 atomic regions from SNP 102361 to 102961 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,190 DEBUG Processing 300/523 atomic regions from SNP 89956 to 90556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,306 DEBUG Processing 343/351 atomic regions from SNP 102661 to 103261 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,365 DEBUG Processing 301/523 atomic regions from SNP 90256 to 90856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,478 DEBUG Processing 344/351 atomic regions from SNP 102961 to 103561 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,536 DEBUG Processing 302/523 atomic regions from SNP 90556 to 91156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,650 DEBUG Processing 345/351 atomic regions from SNP 103261 to 103861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,708 DEBUG Processing 303/523 atomic regions from SNP 90856 to 91456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,825 DEBUG Processing 346/351 atomic regions from SNP 103561 to 104161 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,880 DEBUG Processing 304/523 atomic regions from SNP 91156 to 91756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,994 DEBUG Processing 347/351 atomic regions from SNP 103861 to 104461 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,051 DEBUG Processing 305/523 atomic regions from SNP 91456 to 92056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,160 DEBUG Processing 348/351 atomic regions from SNP 104161 to 104761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,220 DEBUG Processing 306/523 atomic regions from SNP 91756 to 92356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,334 DEBUG Processing 349/351 atomic regions from SNP 104461 to 105061 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,389 DEBUG Processing 307/523 atomic regions from SNP 92056 to 92656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,513 DEBUG Processing 350/351 atomic regions from SNP 104761 to 105361 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,558 DEBUG Processing 308/523 atomic regions from SNP 92356 to 92956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,688 DEBUG Processing 351/351 atomic regions from SNP 105061 to 105661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,727 DEBUG Processing 309/523 atomic regions from SNP 92656 to 93256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,818 DEBUG Unique SNPs positions in subchromosome 1: 105662 2025-01-31 09:57:39,898 DEBUG Processing 310/523 atomic regions from SNP 92956 to 93556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,066 DEBUG Processing 311/523 atomic regions from SNP 93256 to 93856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,247 DEBUG Processing 312/523 atomic regions from SNP 93556 to 94156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,418 DEBUG Processing 313/523 atomic regions from SNP 93856 to 94456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,589 DEBUG Processing 314/523 atomic regions from SNP 94156 to 94756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,757 DEBUG Processing 315/523 atomic regions from SNP 94456 to 95056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,932 DEBUG Processing 316/523 atomic regions from SNP 94756 to 95356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,039 DEBUG Subchromosome time: 79.97919052198995, subchromosome SNPs: 105662 2025-01-31 09:57:41,039 DEBUG Estimated BADs: [4.15, 0.69, 2.77, 0.69, 1.38, 0.69, 1.38, 0.46, 1.38, 0.35, 1.38, 2.77, 1.38, 0.35, 1.38] SNP counts: [8288, 833, 4517, 8122, 3600, 10004, 19162, 3824, 6304, 1175, 3408, 9887, 4439, 5385, 16714] SNP IDs counts: [8288, 833, 4517, 8122, 3600, 10004, 19162, 3824, 6304, 1175, 3408, 9887, 4439, 5385, 16714] Critical gap: 411171bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 7.62Mbp, 8.20Mbp, 11.00Mbp, 15.63Mbp, 17.56Mbp, 23.09Mbp, 33.39Mbp, 35.65Mbp, 39.02Mbp, 39.87Mbp, 41.73Mbp, 46.96Mbp, 49.33Mbp, 52.39Mbp, 61.43Mbp] 2025-01-31 09:57:41,039 DEBUG chr19 time: 79.97968771099113 s 2025-01-31 09:57:41,100 DEBUG chr19: Fitting background model for 15 segments 2025-01-31 09:57:41,106 DEBUG Processing 317/523 atomic regions from SNP 95056 to 95656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,281 DEBUG Processing 318/523 atomic regions from SNP 95356 to 95956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,460 DEBUG Processing 319/523 atomic regions from SNP 95656 to 96256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,653 DEBUG Processing 320/523 atomic regions from SNP 95956 to 96556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,846 DEBUG Processing 321/523 atomic regions from SNP 96256 to 96856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,029 DEBUG Processing 322/523 atomic regions from SNP 96556 to 97156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,211 DEBUG Processing 323/523 atomic regions from SNP 96856 to 97456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,387 DEBUG Processing 324/523 atomic regions from SNP 97156 to 97756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,565 DEBUG Processing 325/523 atomic regions from SNP 97456 to 98056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,742 DEBUG Processing 326/523 atomic regions from SNP 97756 to 98356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,916 DEBUG Processing 327/523 atomic regions from SNP 98056 to 98656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,087 DEBUG Processing 328/523 atomic regions from SNP 98356 to 98956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,260 DEBUG Processing 329/523 atomic regions from SNP 98656 to 99256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,434 DEBUG Processing 330/523 atomic regions from SNP 98956 to 99556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,609 DEBUG Processing 331/523 atomic regions from SNP 99256 to 99856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,792 DEBUG Processing 332/523 atomic regions from SNP 99556 to 100156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,970 DEBUG Processing 333/523 atomic regions from SNP 99856 to 100456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,148 DEBUG Processing 334/523 atomic regions from SNP 100156 to 100756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,326 DEBUG Processing 335/523 atomic regions from SNP 100456 to 101056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,504 DEBUG Processing 336/523 atomic regions from SNP 100756 to 101356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,677 DEBUG Processing 337/523 atomic regions from SNP 101056 to 101656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,856 DEBUG Processing 338/523 atomic regions from SNP 101356 to 101956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,035 DEBUG Processing 339/523 atomic regions from SNP 101656 to 102256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,216 DEBUG Processing 340/523 atomic regions from SNP 101956 to 102556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,396 DEBUG Processing 341/523 atomic regions from SNP 102256 to 102856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,575 DEBUG Processing 342/523 atomic regions from SNP 102556 to 103156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,753 DEBUG Processing 343/523 atomic regions from SNP 102856 to 103456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,945 DEBUG Processing 344/523 atomic regions from SNP 103156 to 103756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,148 DEBUG Processing 345/523 atomic regions from SNP 103456 to 104056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,352 DEBUG Processing 346/523 atomic regions from SNP 103756 to 104356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,553 DEBUG Processing 347/523 atomic regions from SNP 104056 to 104656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,754 DEBUG Processing 348/523 atomic regions from SNP 104356 to 104956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,959 DEBUG Processing 349/523 atomic regions from SNP 104656 to 105256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,161 DEBUG Processing 350/523 atomic regions from SNP 104956 to 105556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,366 DEBUG Processing 351/523 atomic regions from SNP 105256 to 105856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,559 DEBUG Processing 352/523 atomic regions from SNP 105556 to 106156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,739 DEBUG Processing 353/523 atomic regions from SNP 105856 to 106456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,933 DEBUG Processing 354/523 atomic regions from SNP 106156 to 106756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,118 DEBUG Processing 355/523 atomic regions from SNP 106456 to 107056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,302 DEBUG Processing 356/523 atomic regions from SNP 106756 to 107356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,481 DEBUG Processing 357/523 atomic regions from SNP 107056 to 107656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,655 DEBUG Processing 358/523 atomic regions from SNP 107356 to 107956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,834 DEBUG Processing 359/523 atomic regions from SNP 107656 to 108256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,010 DEBUG Processing 360/523 atomic regions from SNP 107956 to 108556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,181 DEBUG Processing 361/523 atomic regions from SNP 108256 to 108856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,354 DEBUG Processing 362/523 atomic regions from SNP 108556 to 109156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,529 DEBUG Processing 363/523 atomic regions from SNP 108856 to 109456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,707 DEBUG Processing 364/523 atomic regions from SNP 109156 to 109756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,883 DEBUG Processing 365/523 atomic regions from SNP 109456 to 110056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,054 DEBUG Processing 366/523 atomic regions from SNP 109756 to 110356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,224 DEBUG Processing 367/523 atomic regions from SNP 110056 to 110656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,420 DEBUG Processing 368/523 atomic regions from SNP 110356 to 110956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,603 DEBUG Processing 369/523 atomic regions from SNP 110656 to 111256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,781 DEBUG Processing 370/523 atomic regions from SNP 110956 to 111556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,955 DEBUG Processing 371/523 atomic regions from SNP 111256 to 111856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,130 DEBUG Processing 372/523 atomic regions from SNP 111556 to 112156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,305 DEBUG Processing 373/523 atomic regions from SNP 111856 to 112456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,481 DEBUG Processing 374/523 atomic regions from SNP 112156 to 112756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,651 DEBUG Processing 375/523 atomic regions from SNP 112456 to 113056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,821 DEBUG Processing 376/523 atomic regions from SNP 112756 to 113356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,998 DEBUG Processing 377/523 atomic regions from SNP 113056 to 113656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,170 DEBUG Processing 378/523 atomic regions from SNP 113356 to 113956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,344 DEBUG Processing 379/523 atomic regions from SNP 113656 to 114256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,520 DEBUG Processing 380/523 atomic regions from SNP 113956 to 114556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,701 DEBUG Processing 381/523 atomic regions from SNP 114256 to 114856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,877 DEBUG Processing 382/523 atomic regions from SNP 114556 to 115156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,053 DEBUG Processing 383/523 atomic regions from SNP 114856 to 115456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,224 DEBUG Processing 384/523 atomic regions from SNP 115156 to 115756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,406 DEBUG Processing 385/523 atomic regions from SNP 115456 to 116056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,604 DEBUG Processing 386/523 atomic regions from SNP 115756 to 116356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,797 DEBUG Processing 387/523 atomic regions from SNP 116056 to 116656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,989 DEBUG Processing 388/523 atomic regions from SNP 116356 to 116956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,185 DEBUG Processing 389/523 atomic regions from SNP 116656 to 117256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,362 DEBUG Processing 390/523 atomic regions from SNP 116956 to 117556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,539 DEBUG Processing 391/523 atomic regions from SNP 117256 to 117856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,710 DEBUG Processing 392/523 atomic regions from SNP 117556 to 118156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,880 DEBUG Processing 393/523 atomic regions from SNP 117856 to 118456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,050 DEBUG Processing 394/523 atomic regions from SNP 118156 to 118756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,219 DEBUG Processing 395/523 atomic regions from SNP 118456 to 119056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,388 DEBUG Processing 396/523 atomic regions from SNP 118756 to 119356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,557 DEBUG Processing 397/523 atomic regions from SNP 119056 to 119656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,726 DEBUG Processing 398/523 atomic regions from SNP 119356 to 119956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,896 DEBUG Processing 399/523 atomic regions from SNP 119656 to 120256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,067 DEBUG Processing 400/523 atomic regions from SNP 119956 to 120556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,239 DEBUG Processing 401/523 atomic regions from SNP 120256 to 120856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,408 DEBUG Processing 402/523 atomic regions from SNP 120556 to 121156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,577 DEBUG Processing 403/523 atomic regions from SNP 120856 to 121456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,745 DEBUG Processing 404/523 atomic regions from SNP 121156 to 121756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,916 DEBUG Processing 405/523 atomic regions from SNP 121456 to 122056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,109 DEBUG Processing 406/523 atomic regions from SNP 121756 to 122356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,281 DEBUG Processing 407/523 atomic regions from SNP 122056 to 122656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,449 DEBUG Processing 408/523 atomic regions from SNP 122356 to 122956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,616 DEBUG Processing 409/523 atomic regions from SNP 122656 to 123256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,784 DEBUG Processing 410/523 atomic regions from SNP 122956 to 123556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,954 DEBUG Processing 411/523 atomic regions from SNP 123256 to 123856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,133 DEBUG Processing 412/523 atomic regions from SNP 123556 to 124156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,305 DEBUG Processing 413/523 atomic regions from SNP 123856 to 124456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,474 DEBUG Processing 414/523 atomic regions from SNP 124156 to 124756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,644 DEBUG Processing 415/523 atomic regions from SNP 124456 to 125056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,816 DEBUG Processing 416/523 atomic regions from SNP 124756 to 125356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,990 DEBUG Processing 417/523 atomic regions from SNP 125056 to 125656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,163 DEBUG Processing 418/523 atomic regions from SNP 125356 to 125956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,335 DEBUG Processing 419/523 atomic regions from SNP 125656 to 126256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,507 DEBUG Processing 420/523 atomic regions from SNP 125956 to 126556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,680 DEBUG Processing 421/523 atomic regions from SNP 126256 to 126856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,863 DEBUG Processing 422/523 atomic regions from SNP 126556 to 127156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,038 DEBUG Processing 423/523 atomic regions from SNP 126856 to 127456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,214 DEBUG Processing 424/523 atomic regions from SNP 127156 to 127756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,413 DEBUG Processing 425/523 atomic regions from SNP 127456 to 128056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,602 DEBUG Processing 426/523 atomic regions from SNP 127756 to 128356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,779 DEBUG Processing 427/523 atomic regions from SNP 128056 to 128656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,965 DEBUG Processing 428/523 atomic regions from SNP 128356 to 128956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,151 DEBUG Processing 429/523 atomic regions from SNP 128656 to 129256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,341 DEBUG Processing 430/523 atomic regions from SNP 128956 to 129556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,540 DEBUG Processing 431/523 atomic regions from SNP 129256 to 129856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,730 DEBUG Processing 432/523 atomic regions from SNP 129556 to 130156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,921 DEBUG Processing 433/523 atomic regions from SNP 129856 to 130456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,111 DEBUG Processing 434/523 atomic regions from SNP 130156 to 130756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,308 DEBUG Processing 435/523 atomic regions from SNP 130456 to 131056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,506 DEBUG Processing 436/523 atomic regions from SNP 130756 to 131356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,691 DEBUG Processing 437/523 atomic regions from SNP 131056 to 131656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,936 DEBUG Processing 438/523 atomic regions from SNP 131356 to 131956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,161 DEBUG Processing 439/523 atomic regions from SNP 131656 to 132256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,407 DEBUG Processing 440/523 atomic regions from SNP 131956 to 132556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,614 DEBUG Processing 441/523 atomic regions from SNP 132256 to 132856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,855 DEBUG Processing 442/523 atomic regions from SNP 132556 to 133156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,068 DEBUG Processing 443/523 atomic regions from SNP 132856 to 133456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,280 DEBUG Processing 444/523 atomic regions from SNP 133156 to 133756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,494 DEBUG Processing 445/523 atomic regions from SNP 133456 to 134056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,702 DEBUG Processing 446/523 atomic regions from SNP 133756 to 134356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,953 DEBUG Processing 447/523 atomic regions from SNP 134056 to 134656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,157 DEBUG Processing 448/523 atomic regions from SNP 134356 to 134956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,362 DEBUG Processing 449/523 atomic regions from SNP 134656 to 135256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,572 DEBUG Processing 450/523 atomic regions from SNP 134956 to 135556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,779 DEBUG Processing 451/523 atomic regions from SNP 135256 to 135856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,987 DEBUG Processing 452/523 atomic regions from SNP 135556 to 136156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,182 DEBUG Processing 453/523 atomic regions from SNP 135856 to 136456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,370 DEBUG Processing 454/523 atomic regions from SNP 136156 to 136756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,558 DEBUG Processing 455/523 atomic regions from SNP 136456 to 137056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,750 DEBUG Processing 456/523 atomic regions from SNP 136756 to 137356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,935 DEBUG Processing 457/523 atomic regions from SNP 137056 to 137656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,129 DEBUG Processing 458/523 atomic regions from SNP 137356 to 137956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,316 DEBUG Processing 459/523 atomic regions from SNP 137656 to 138256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,499 DEBUG Processing 460/523 atomic regions from SNP 137956 to 138556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,701 DEBUG Processing 461/523 atomic regions from SNP 138256 to 138856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,903 DEBUG Processing 462/523 atomic regions from SNP 138556 to 139156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,096 DEBUG Processing 463/523 atomic regions from SNP 138856 to 139456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,325 DEBUG Processing 464/523 atomic regions from SNP 139156 to 139756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,538 DEBUG Processing 465/523 atomic regions from SNP 139456 to 140056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,741 DEBUG Processing 466/523 atomic regions from SNP 139756 to 140356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,940 DEBUG Processing 467/523 atomic regions from SNP 140056 to 140656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,134 DEBUG Processing 468/523 atomic regions from SNP 140356 to 140956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,323 DEBUG Processing 469/523 atomic regions from SNP 140656 to 141256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,516 DEBUG Processing 470/523 atomic regions from SNP 140956 to 141556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,704 DEBUG Processing 471/523 atomic regions from SNP 141256 to 141856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,894 DEBUG Processing 472/523 atomic regions from SNP 141556 to 142156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,081 DEBUG Processing 473/523 atomic regions from SNP 141856 to 142456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,272 DEBUG Processing 474/523 atomic regions from SNP 142156 to 142756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,464 DEBUG Processing 475/523 atomic regions from SNP 142456 to 143056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,651 DEBUG Processing 476/523 atomic regions from SNP 142756 to 143356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,840 DEBUG Processing 477/523 atomic regions from SNP 143056 to 143656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,028 DEBUG Processing 478/523 atomic regions from SNP 143356 to 143956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,227 DEBUG Processing 479/523 atomic regions from SNP 143656 to 144256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,421 DEBUG Processing 480/523 atomic regions from SNP 143956 to 144556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,607 DEBUG Processing 481/523 atomic regions from SNP 144256 to 144856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,796 DEBUG Processing 482/523 atomic regions from SNP 144556 to 145156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,976 DEBUG Processing 483/523 atomic regions from SNP 144856 to 145456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,158 DEBUG Processing 484/523 atomic regions from SNP 145156 to 145756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,341 DEBUG Processing 485/523 atomic regions from SNP 145456 to 146056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,527 DEBUG Processing 486/523 atomic regions from SNP 145756 to 146356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,709 DEBUG Processing 487/523 atomic regions from SNP 146056 to 146656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,902 DEBUG Processing 488/523 atomic regions from SNP 146356 to 146956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,134 DEBUG Processing 489/523 atomic regions from SNP 146656 to 147256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,316 DEBUG Processing 490/523 atomic regions from SNP 146956 to 147556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,504 DEBUG Processing 491/523 atomic regions from SNP 147256 to 147856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,697 DEBUG Processing 492/523 atomic regions from SNP 147556 to 148156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,893 DEBUG Processing 493/523 atomic regions from SNP 147856 to 148456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,080 DEBUG Processing 494/523 atomic regions from SNP 148156 to 148756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,271 DEBUG Processing 495/523 atomic regions from SNP 148456 to 149056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,460 DEBUG Processing 496/523 atomic regions from SNP 148756 to 149356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,654 DEBUG Processing 497/523 atomic regions from SNP 149056 to 149656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,838 DEBUG Processing 498/523 atomic regions from SNP 149356 to 149956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,031 DEBUG Processing 499/523 atomic regions from SNP 149656 to 150256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,225 DEBUG Processing 500/523 atomic regions from SNP 149956 to 150556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,416 DEBUG Processing 501/523 atomic regions from SNP 150256 to 150856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,611 DEBUG Processing 502/523 atomic regions from SNP 150556 to 151156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,807 DEBUG Processing 503/523 atomic regions from SNP 150856 to 151456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,003 DEBUG Processing 504/523 atomic regions from SNP 151156 to 151756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,212 DEBUG Processing 505/523 atomic regions from SNP 151456 to 152056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,422 DEBUG Processing 506/523 atomic regions from SNP 151756 to 152356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,714 DEBUG Processing 507/523 atomic regions from SNP 152056 to 152656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,988 DEBUG Processing 508/523 atomic regions from SNP 152356 to 152956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,191 DEBUG Processing 509/523 atomic regions from SNP 152656 to 153256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,450 DEBUG Processing 510/523 atomic regions from SNP 152956 to 153556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,977 DEBUG Processing 511/523 atomic regions from SNP 153256 to 153856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,185 DEBUG Processing 512/523 atomic regions from SNP 153556 to 154156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,521 DEBUG Processing 513/523 atomic regions from SNP 153856 to 154456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,752 DEBUG Processing 514/523 atomic regions from SNP 154156 to 154756 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,948 DEBUG Processing 515/523 atomic regions from SNP 154456 to 155056 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,152 DEBUG Processing 516/523 atomic regions from SNP 154756 to 155356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,355 DEBUG Processing 517/523 atomic regions from SNP 155056 to 155656 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,557 DEBUG Processing 518/523 atomic regions from SNP 155356 to 155956 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,761 DEBUG Processing 519/523 atomic regions from SNP 155656 to 156256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,966 DEBUG Processing 520/523 atomic regions from SNP 155956 to 156556 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,165 DEBUG Processing 521/523 atomic regions from SNP 156256 to 156856 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,377 DEBUG Processing 522/523 atomic regions from SNP 156556 to 157156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,581 DEBUG Processing 523/523 atomic regions from SNP 156856 to 157456 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,705 DEBUG Unique SNPs positions in subchromosome 1: 157457 2025-01-31 09:58:22,090 DEBUG Subchromosome time: 119.87846034904942, subchromosome SNPs: 157457 2025-01-31 09:58:22,091 DEBUG Estimated BADs: [1.09, 0.36, 1.09, 0.54, 1.09, 3.26, 1.09, 3.26, 1.09, 0.54, 2.17, 1.09, 0.36] SNP counts: [25374, 2719, 13244, 9614, 4603, 4318, 43087, 2151, 17968, 4289, 7980, 13804, 8306] SNP IDs counts: [25374, 2719, 13244, 9614, 4603, 4318, 43087, 2151, 17968, 4289, 7980, 13804, 8306] Critical gap: 506859bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 17.35Mbp, 18.96Mbp, 26.36Mbp, 31.76Mbp, 34.32Mbp, 36.57Mbp, 60.49Mbp, 61.61Mbp, 71.31Mbp, 73.70Mbp, 78.03Mbp, 85.61Mbp, 90.70Mbp] 2025-01-31 09:58:22,091 DEBUG chr18 time: 119.87895045999903 s 2025-01-31 09:58:22,178 DEBUG chr18: Fitting background model for 13 segments 2025-01-31 09:58:28,984 DEBUG Results of fit_background_model emitted. 2025-01-31 09:58:29,084 INFO Signal to noise fit: SPOT=0.15±0.09 2025-01-31 09:58:29,090 INFO Found 5 outlier SPOT score segments at iteration 1. Refitting with approximated signal/noise constraint. 2025-01-31 09:58:29,133 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:58:29,133 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 09:58:34,822 DEBUG chr10: Fitting background model for 1 segments 2025-01-31 09:58:34,884 DEBUG chr11: Fitting background model for 1 segments 2025-01-31 09:58:35,115 DEBUG chr13: Fitting background model for 2 segments 2025-01-31 09:58:37,730 DEBUG chr1: Fitting background model for 1 segments 2025-01-31 09:58:45,858 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 09:58:45,934 INFO Signal to noise fit: SPOT=0.15±0.09 2025-01-31 09:58:45,943 INFO Final SPOT score: 0.15±0.09. Refitted 5 segments. 2025-01-31 09:58:45,989 INFO Estimating per-bp parameters of background model 2025-01-31 09:58:45,995 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:58:45,995 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 09:58:51,809 DEBUG chr5:3002500-5883251: Successfully fit background model for 2,527,549 bp. Use segment r for 0 bp 2025-01-31 09:58:52,863 DEBUG chr3:3000000-8530251: Successfully fit background model for 4,769,105 bp. Use segment r for 0 bp 2025-01-31 09:58:53,039 DEBUG chr3:8530251-10168751: Successfully fit background model for 1,503,730 bp. Use segment r for 0 bp 2025-01-31 09:58:53,830 DEBUG chr4:3050000-16311751: Successfully fit background model for 11,638,689 bp. Use segment r for 0 bp 2025-01-31 09:58:53,918 DEBUG chr2:3051000-15347751: Successfully fit background model for 11,317,844 bp. Use segment r for 0 bp 2025-01-31 09:58:54,068 DEBUG chrX:3055000-7517251: Successfully fit background model for 1,972,384 bp. Use segment r for 240 bp 2025-01-31 09:58:54,103 DEBUG chr2:15347751-17088001: Successfully fit background model for 1,525,701 bp. Use segment r for 0 bp 2025-01-31 09:58:54,184 DEBUG chr3:10168751-19044251: Successfully fit background model for 7,472,947 bp. Use segment r for 0 bp 2025-01-31 09:58:54,291 DEBUG chr3:19044251-19959251: Successfully fit background model for 830,507 bp. Use segment r for 0 bp 2025-01-31 09:58:54,404 DEBUG chr5:5883251-20874751: Successfully fit background model for 11,951,090 bp. Use segment r for 1,771 bp 2025-01-31 09:58:54,744 DEBUG chr5:20874751-24316751: Successfully fit background model for 3,170,694 bp. Use segment r for 0 bp 2025-01-31 09:58:54,833 DEBUG chr5:24316751-25040251: Successfully fit background model for 700,904 bp. Use segment r for 0 bp 2025-01-31 09:58:54,878 DEBUG chrX:7517251-14596251: Successfully fit background model for 6,251,394 bp. Use segment r for 0 bp 2025-01-31 09:58:54,954 DEBUG chr2:17088001-24916251: Successfully fit background model for 7,000,118 bp. Use segment r for 0 bp 2025-01-31 09:58:55,103 DEBUG chr3:19959251-27062751: Successfully fit background model for 6,198,877 bp. Use segment r for 0 bp 2025-01-31 09:58:55,381 DEBUG chr5:25040251-30418751: Successfully fit background model for 4,800,803 bp. Use segment r for 0 bp 2025-01-31 09:58:55,720 DEBUG chr2:24916251-32925751: Successfully fit background model for 7,768,515 bp. Use segment r for 0 bp 2025-01-31 09:58:55,818 DEBUG chr4:16311751-32471751: Successfully fit background model for 14,317,581 bp. Use segment r for 0 bp 2025-01-31 09:58:55,883 DEBUG chr3:27062751-33952251: Successfully fit background model for 6,326,612 bp. Use segment r for 0 bp 2025-01-31 09:58:56,071 DEBUG chr2:32925751-36385751: Successfully fit background model for 3,347,550 bp. Use segment r for 0 bp 2025-01-31 09:58:56,100 DEBUG chr4:32471751-34915251: Successfully fit background model for 2,307,707 bp. Use segment r for 0 bp 2025-01-31 09:58:56,376 DEBUG chr5:30418751-39289251: Successfully fit background model for 8,443,765 bp. Use segment r for 0 bp 2025-01-31 09:58:56,403 DEBUG chr2:36385751-39697251: Successfully fit background model for 3,001,754 bp. Use segment r for 0 bp 2025-01-31 09:58:56,611 DEBUG chr4:34915251-40122501: Successfully fit background model for 4,621,823 bp. Use segment r for 0 bp 2025-01-31 09:58:56,681 DEBUG chr1:3000500-33401251: Successfully fit background model for 27,056,204 bp. Use segment r for 0 bp 2025-01-31 09:58:56,796 DEBUG chr4:40122501-41855501: Successfully fit background model for 1,572,910 bp. Use segment r for 0 bp 2025-01-31 09:58:56,813 DEBUG chr2:39697251-43764751: Successfully fit background model for 3,721,351 bp. Use segment r for 0 bp 2025-01-31 09:58:56,840 DEBUG chr3:33952251-42522751: Successfully fit background model for 7,857,384 bp. Use segment r for 0 bp 2025-01-31 09:58:57,035 DEBUG chrX:14596251-26917001: Successfully fit background model for 8,757,785 bp. Use segment r for 449 bp 2025-01-31 09:58:57,320 DEBUG chr4:42724000-47648251: Successfully fit background model for 4,677,930 bp. Use segment r for 0 bp 2025-01-31 09:58:57,340 DEBUG chr1:33401251-39664251: Successfully fit background model for 5,969,320 bp. Use segment r for 0 bp 2025-01-31 09:58:57,496 DEBUG chr3:42522751-48990751: Successfully fit background model for 5,742,747 bp. Use segment r for 0 bp 2025-01-31 09:58:57,532 DEBUG chr4:47648251-49692001: Successfully fit background model for 1,881,730 bp. Use segment r for 0 bp 2025-01-31 09:58:57,677 DEBUG chr5:39289251-50937251: Successfully fit background model for 10,569,854 bp. Use segment r for 0 bp 2025-01-31 09:58:57,709 DEBUG chr1:39664251-43685251: Successfully fit background model for 3,845,012 bp. Use segment r for 0 bp 2025-01-31 09:58:57,760 DEBUG chr4:49692001-51970251: Successfully fit background model for 2,008,749 bp. Use segment r for 0 bp 2025-01-31 09:58:57,820 DEBUG chr3:48990751-52192751: Successfully fit background model for 2,915,725 bp. Use segment r for 0 bp 2025-01-31 09:58:57,834 DEBUG chr2:43764751-53391751: Successfully fit background model for 9,004,202 bp. Use segment r for 0 bp 2025-01-31 09:58:58,004 DEBUG chr5:50937251-54378751: Successfully fit background model for 3,290,810 bp. Use segment r for 0 bp 2025-01-31 09:58:58,109 DEBUG chr2:53391751-56288251: Successfully fit background model for 2,475,043 bp. Use segment r for 0 bp 2025-01-31 09:58:58,304 DEBUG chrX:31133000-39271251: Successfully fit background model for 3,112,347 bp. Use segment r for 2,693 bp 2025-01-31 09:58:58,468 DEBUG chr1:43685251-51862251: Successfully fit background model for 7,129,146 bp. Use segment r for 0 bp 2025-01-31 09:58:58,765 DEBUG chr2:56288251-62802751: Successfully fit background model for 6,039,805 bp. Use segment r for 0 bp 2025-01-31 09:58:59,042 DEBUG chr5:54378751-63381751: Successfully fit background model for 7,962,750 bp. Use segment r for 0 bp 2025-01-31 09:58:59,247 DEBUG chr2:62802751-67823751: Successfully fit background model for 4,634,296 bp. Use segment r for 0 bp 2025-01-31 09:58:59,255 DEBUG chrX:39271251-47907251: Successfully fit background model for 7,468,040 bp. Use segment r for 0 bp 2025-01-31 09:58:59,519 DEBUG chr5:63381751-68273751: Successfully fit background model for 4,638,451 bp. Use segment r for 0 bp 2025-01-31 09:58:59,539 DEBUG chrX:47907251-50635751: Successfully fit background model for 2,367,308 bp. Use segment r for 0 bp 2025-01-31 09:58:59,820 DEBUG chr5:68273751-71478751: Successfully fit background model for 2,811,507 bp. Use segment r for 0 bp 2025-01-31 09:59:00,112 DEBUG chr4:51970251-64265251: Successfully fit background model for 9,897,923 bp. Use segment r for 3,822 bp 2025-01-31 09:59:00,207 DEBUG chr3:52192751-65315751: Successfully fit background model for 11,785,658 bp. Use segment r for 5,448 bp 2025-01-31 09:59:00,446 DEBUG chr5:71478751-77810251: Successfully fit background model for 5,983,942 bp. Use segment r for 0 bp 2025-01-31 09:59:00,729 DEBUG chr2:67823751-81024251: Successfully fit background model for 12,573,104 bp. Use segment r for 0 bp 2025-01-31 09:59:00,800 DEBUG chr3:65315751-71031751: Successfully fit background model for 5,232,064 bp. Use segment r for 0 bp 2025-01-31 09:59:00,930 DEBUG chr2:81024251-83004751: Successfully fit background model for 1,741,590 bp. Use segment r for 0 bp 2025-01-31 09:59:00,945 DEBUG chr1:51862251-73879251: Successfully fit background model for 20,459,847 bp. Use segment r for 0 bp 2025-01-31 09:59:01,098 DEBUG chr1:73879251-75123751: Successfully fit background model for 1,136,028 bp. Use segment r for 0 bp 2025-01-31 09:59:01,099 DEBUG chr2:83004751-84653251: Successfully fit background model for 1,346,589 bp. Use segment r for 0 bp 2025-01-31 09:59:01,143 DEBUG chr1:75123751-75482251: Successfully fit background model for 354,988 bp. Use segment r for 0 bp 2025-01-31 09:59:01,173 DEBUG chr2:84653251-85335251: Successfully fit background model for 642,892 bp. Use segment r for 0 bp 2025-01-31 09:59:01,551 DEBUG chr5:77810251-88035751: Successfully fit background model for 9,133,604 bp. Use segment r for 0 bp 2025-01-31 09:59:01,601 DEBUG chr2:85335251-89641751: Successfully fit background model for 3,762,438 bp. Use segment r for 0 bp 2025-01-31 09:59:01,711 DEBUG chr3:71031751-79321251: Successfully fit background model for 7,371,464 bp. Use segment r for 0 bp 2025-01-31 09:59:01,731 DEBUG chr2:89641751-90892251: Successfully fit background model for 940,087 bp. Use segment r for 0 bp 2025-01-31 09:59:01,785 DEBUG chr3:79321251-79792251: Successfully fit background model for 442,404 bp. Use segment r for 0 bp 2025-01-31 09:59:02,098 DEBUG chrX:50635751-71267751: Successfully fit background model for 16,766,051 bp. Use segment r for 0 bp 2025-01-31 09:59:02,120 DEBUG chr4:64265251-80492751: Successfully fit background model for 14,368,033 bp. Use segment r for 0 bp 2025-01-31 09:59:02,153 DEBUG chr2:90892251-95005751: Successfully fit background model for 3,968,499 bp. Use segment r for 0 bp 2025-01-31 09:59:02,196 DEBUG chr1:75482251-84837751: Successfully fit background model for 8,623,890 bp. Use segment r for 0 bp 2025-01-31 09:59:02,220 DEBUG chr3:79792251-83722751: Successfully fit background model for 3,602,641 bp. Use segment r for 0 bp 2025-01-31 09:59:02,628 DEBUG chr3:83722751-87694251: Successfully fit background model for 3,788,793 bp. Use segment r for 0 bp 2025-01-31 09:59:02,650 DEBUG chr4:80492751-85574751: Successfully fit background model for 4,661,230 bp. Use segment r for 0 bp 2025-01-31 09:59:02,777 DEBUG chr2:95005751-101103251: Successfully fit background model for 5,073,819 bp. Use segment r for 0 bp 2025-01-31 09:59:02,781 DEBUG chrX:71267751-75672751: Successfully fit background model for 3,572,663 bp. Use segment r for 2,791 bp 2025-01-31 09:59:02,906 DEBUG chr3:87694251-90423251: Successfully fit background model for 2,592,470 bp. Use segment r for 0 bp 2025-01-31 09:59:03,056 DEBUG chr4:85574751-89680251: Successfully fit background model for 3,710,698 bp. Use segment r for 0 bp 2025-01-31 09:59:03,305 DEBUG chr4:89680251-92040251: Successfully fit background model for 2,044,683 bp. Use segment r for 0 bp 2025-01-31 09:59:03,310 DEBUG chr3:90423251-94332751: Successfully fit background model for 2,999,533 bp. Use segment r for 0 bp 2025-01-31 09:59:03,332 DEBUG chr1:84837751-94960751: Successfully fit background model for 9,018,060 bp. Use segment r for 0 bp 2025-01-31 09:59:03,467 DEBUG chr2:101103251-107922751: Successfully fit background model for 6,459,213 bp. Use segment r for 0 bp 2025-01-31 09:59:03,558 DEBUG chr3:94332751-96734251: Successfully fit background model for 2,199,929 bp. Use segment r for 0 bp 2025-01-31 09:59:03,949 DEBUG chr3:96734251-100394251: Successfully fit background model for 3,229,344 bp. Use segment r for 0 bp 2025-01-31 09:59:04,348 DEBUG chr1:94960751-104302251: Successfully fit background model for 8,207,097 bp. Use segment r for 0 bp 2025-01-31 09:59:04,414 DEBUG chr4:92040251-100879751: Successfully fit background model for 8,111,271 bp. Use segment r for 0 bp 2025-01-31 09:59:04,606 DEBUG chr2:107922751-118649251: Successfully fit background model for 9,805,694 bp. Use segment r for 0 bp 2025-01-31 09:59:04,694 DEBUG chr1:104302251-107853251: Successfully fit background model for 3,244,157 bp. Use segment r for 0 bp 2025-01-31 09:59:04,966 DEBUG chr3:100394251-108766751: Successfully fit background model for 7,940,557 bp. Use segment r for 0 bp 2025-01-31 09:59:04,996 DEBUG chrX:75672751-93712251: Successfully fit background model for 15,288,284 bp. Use segment r for 0 bp 2025-01-31 09:59:05,050 DEBUG chr2:118649251-122928251: Successfully fit background model for 4,075,263 bp. Use segment r for 0 bp 2025-01-31 09:59:05,109 DEBUG chrX:93712251-94492751: Successfully fit background model for 726,915 bp. Use segment r for 0 bp 2025-01-31 09:59:05,145 DEBUG chr4:100879751-106453251: Successfully fit background model for 5,233,280 bp. Use segment r for 0 bp 2025-01-31 09:59:05,178 DEBUG chr2:122928251-124141251: Successfully fit background model for 1,095,019 bp. Use segment r for 0 bp 2025-01-31 09:59:05,448 DEBUG chr2:124141251-127078751: Successfully fit background model for 2,762,993 bp. Use segment r for 0 bp 2025-01-31 09:59:05,542 DEBUG chr4:106453251-110328501: Successfully fit background model for 3,684,434 bp. Use segment r for 0 bp 2025-01-31 09:59:05,566 DEBUG chr5:88035751-110337251: Successfully fit background model for 18,452,860 bp. Use segment r for 3,511 bp 2025-01-31 09:59:05,626 DEBUG chrX:94492751-99016751: Successfully fit background model for 3,731,610 bp. Use segment r for 0 bp 2025-01-31 09:59:05,708 DEBUG chr4:110328501-111908251: Successfully fit background model for 1,400,175 bp. Use segment r for 0 bp 2025-01-31 09:59:05,841 DEBUG chr2:127078751-131044251: Successfully fit background model for 3,817,654 bp. Use segment r for 0 bp 2025-01-31 09:59:05,896 DEBUG chr1:107853251-118310751: Successfully fit background model for 9,105,389 bp. Use segment r for 0 bp 2025-01-31 09:59:05,912 DEBUG chr5:110337251-113734251: Successfully fit background model for 3,312,386 bp. Use segment r for 0 bp 2025-01-31 09:59:05,941 DEBUG chr4:111908251-114031751: Successfully fit background model for 1,852,415 bp. Use segment r for 0 bp 2025-01-31 09:59:06,071 DEBUG chr1:118310751-119968751: Successfully fit background model for 1,609,947 bp. Use segment r for 0 bp 2025-01-31 09:59:06,076 DEBUG chrX:99016751-103586251: Successfully fit background model for 4,148,550 bp. Use segment r for 0 bp 2025-01-31 09:59:06,115 DEBUG chr5:113734251-115547251: Successfully fit background model for 1,763,778 bp. Use segment r for 0 bp 2025-01-31 09:59:06,130 DEBUG chr4:114031751-115823251: Successfully fit background model for 1,539,225 bp. Use segment r for 0 bp 2025-01-31 09:59:06,325 DEBUG chr3:108766751-121156751: Successfully fit background model for 11,043,387 bp. Use segment r for 0 bp 2025-01-31 09:59:06,350 DEBUG chr1:119968751-122783251: Successfully fit background model for 2,620,361 bp. Use segment r for 0 bp 2025-01-31 09:59:06,356 DEBUG chr2:131044251-136257751: Successfully fit background model for 4,909,209 bp. Use segment r for 0 bp 2025-01-31 09:59:06,486 DEBUG chr1:122783251-124106251: Successfully fit background model for 1,234,836 bp. Use segment r for 0 bp 2025-01-31 09:59:06,555 DEBUG chr3:121156751-123111751: Successfully fit background model for 1,905,892 bp. Use segment r for 0 bp 2025-01-31 09:59:06,581 DEBUG chr5:115547251-120091751: Successfully fit background model for 4,449,496 bp. Use segment r for 0 bp 2025-01-31 09:59:06,860 DEBUG chr2:136257751-141440751: Successfully fit background model for 4,795,592 bp. Use segment r for 0 bp 2025-01-31 09:59:06,959 DEBUG chr3:123111751-127193251: Successfully fit background model for 3,756,241 bp. Use segment r for 0 bp 2025-01-31 09:59:07,090 DEBUG chr5:120091751-125369751: Successfully fit background model for 5,056,129 bp. Use segment r for 0 bp 2025-01-31 09:59:07,143 DEBUG chrX:103586251-113261751: Successfully fit background model for 8,205,676 bp. Use segment r for 0 bp 2025-01-31 09:59:07,162 DEBUG chr1:124106251-131022751: Successfully fit background model for 6,423,594 bp. Use segment r for 0 bp 2025-01-31 09:59:07,308 DEBUG chr3:127193251-130661251: Successfully fit background model for 3,286,295 bp. Use segment r for 0 bp 2025-01-31 09:59:07,670 DEBUG chr1:131022751-136409251: Successfully fit background model for 5,254,642 bp. Use segment r for 0 bp 2025-01-31 09:59:07,962 DEBUG chr1:136409251-139516751: Successfully fit background model for 2,914,491 bp. Use segment r for 0 bp 2025-01-31 09:59:07,962 DEBUG chr5:125369751-134172751: Successfully fit background model for 8,387,339 bp. Use segment r for 0 bp 2025-01-31 09:59:08,108 DEBUG chr2:141440751-152321251: Successfully fit background model for 9,846,150 bp. Use segment r for 0 bp 2025-01-31 09:59:08,281 DEBUG chr1:139516751-142787751: Successfully fit background model for 2,801,031 bp. Use segment r for 0 bp 2025-01-31 09:59:08,400 DEBUG chr3:130661251-139154751: Successfully fit background model for 7,796,077 bp. Use segment r for 0 bp 2025-01-31 09:59:08,441 DEBUG chr1:142787751-144414251: Successfully fit background model for 1,373,716 bp. Use segment r for 0 bp 2025-01-31 09:59:08,685 DEBUG chr3:139154751-141965251: Successfully fit background model for 2,559,661 bp. Use segment r for 0 bp 2025-01-31 09:59:08,715 DEBUG chr2:152321251-158518251: Successfully fit background model for 5,955,179 bp. Use segment r for 0 bp 2025-01-31 09:59:08,935 DEBUG chr1:144414251-149416251: Successfully fit background model for 4,402,759 bp. Use segment r for 0 bp 2025-01-31 09:59:09,028 DEBUG chr5:134172751-144962751: Successfully fit background model for 10,211,308 bp. Use segment r for 0 bp 2025-01-31 09:59:09,081 DEBUG chrX:113261751-124235001: Successfully fit background model for 8,609,103 bp. Use segment r for 484 bp 2025-01-31 09:59:09,148 DEBUG chr2:158518251-163195751: Successfully fit background model for 4,469,044 bp. Use segment r for 0 bp 2025-01-31 09:59:09,233 DEBUG chr3:141965251-147078751: Successfully fit background model for 4,856,334 bp. Use segment r for 0 bp 2025-01-31 09:59:09,307 DEBUG chr4:115823251-141637751: Successfully fit background model for 24,093,941 bp. Use segment r for 0 bp 2025-01-31 09:59:09,440 DEBUG chr1:149416251-154980251: Successfully fit background model for 5,224,046 bp. Use segment r for 0 bp 2025-01-31 09:59:09,603 DEBUG chr1:154980251-156614251: Successfully fit background model for 1,529,911 bp. Use segment r for 0 bp 2025-01-31 09:59:09,607 DEBUG chr2:163195751-168112251: Successfully fit background model for 4,741,884 bp. Use segment r for 0 bp 2025-01-31 09:59:09,657 DEBUG chr5:144962751-151834684: Successfully fit background model for 6,223,682 bp. Use segment r for 0 bp 2025-01-31 09:59:09,702 DEBUG chr3:147078751-151694251: Successfully fit background model for 4,349,676 bp. Use segment r for 0 bp 2025-01-31 09:59:09,864 DEBUG chrX:126001000-133923251: Successfully fit background model for 6,808,707 bp. Use segment r for 0 bp 2025-01-31 09:59:10,036 DEBUG chr3:151694251-154816251: Successfully fit background model for 2,968,193 bp. Use segment r for 0 bp 2025-01-31 09:59:10,328 DEBUG chr4:141637751-147865751: Successfully fit background model for 3,993,752 bp. Use segment r for 1,775 bp 2025-01-31 09:59:10,509 DEBUG chrX:133923251-140518251: Successfully fit background model for 5,731,622 bp. Use segment r for 0 bp 2025-01-31 09:59:10,599 DEBUG chr3:154816251-160039680: Successfully fit background model for 4,602,967 bp. Use segment r for 0 bp 2025-01-31 09:59:10,615 DEBUG chr1:156614251-165058751: Successfully fit background model for 7,976,885 bp. Use segment r for 0 bp 2025-01-31 09:59:10,651 DEBUG chr2:168112251-175179001: Successfully fit background model for 6,724,695 bp. Use segment r for 512 bp 2025-01-31 09:59:10,931 DEBUG chr1:165058751-168212251: Successfully fit background model for 2,912,793 bp. Use segment r for 0 bp 2025-01-31 09:59:10,951 DEBUG chr2:176700000-179701751: Successfully fit background model for 1,814,072 bp. Use segment r for 0 bp 2025-01-31 09:59:11,206 DEBUG chr2:179701751-182113224: Successfully fit background model for 2,219,141 bp. Use segment r for 0 bp 2025-01-31 09:59:11,219 DEBUG chr1:168212251-171030751: Successfully fit background model for 2,649,164 bp. Use segment r for 0 bp 2025-01-31 09:59:11,296 DEBUG chr4:147865751-156508116: Successfully fit background model for 8,224,833 bp. Use segment r for 0 bp 2025-01-31 09:59:11,353 DEBUG chr1:171030751-172307751: Successfully fit background model for 1,185,213 bp. Use segment r for 0 bp 2025-01-31 09:59:12,065 DEBUG chr1:172307751-178301751: Successfully fit background model for 5,408,220 bp. Use segment r for 0 bp 2025-01-31 09:59:12,391 DEBUG chrX:140518251-150425751: Successfully fit background model for 6,736,591 bp. Use segment r for 6,939 bp 2025-01-31 09:59:12,606 DEBUG chrX:150425751-152268751: Successfully fit background model for 1,653,218 bp. Use segment r for 0 bp 2025-01-31 09:59:12,788 DEBUG chr1:178301751-185414751: Successfully fit background model for 6,727,443 bp. Use segment r for 0 bp 2025-01-31 09:59:13,342 DEBUG chr1:185414751-190834751: Successfully fit background model for 5,219,967 bp. Use segment r for 0 bp 2025-01-31 09:59:13,475 DEBUG chr1:190834751-191944751: Successfully fit background model for 1,068,125 bp. Use segment r for 0 bp 2025-01-31 09:59:13,563 DEBUG chrX:152268751-159241251: Successfully fit background model for 5,944,315 bp. Use segment r for 0 bp 2025-01-31 09:59:14,005 DEBUG chr1:191944751-195471971: Successfully fit background model for 3,174,974 bp. Use segment r for 0 bp 2025-01-31 09:59:15,204 DEBUG chrX:159241251-169968751: Successfully fit background model for 9,821,005 bp. Use segment r for 0 bp 2025-01-31 09:59:15,355 DEBUG chrX:169968751-171031299: Successfully fit background model for 15,046 bp. Use segment r for 0 bp 2025-01-31 10:00:45,423 DEBUG chr7:3004000-4444751: Successfully fit background model for 1,035,075 bp. Use segment r for 0 bp 2025-01-31 10:00:45,498 DEBUG chr7:4444751-5121251: Successfully fit background model for 632,872 bp. Use segment r for 0 bp 2025-01-31 10:00:45,713 DEBUG chr7:5121251-7300751: Successfully fit background model for 1,764,769 bp. Use segment r for 0 bp 2025-01-31 10:00:45,719 DEBUG chr6:3050000-9337751: Successfully fit background model for 5,591,504 bp. Use segment r for 0 bp 2025-01-31 10:00:45,789 DEBUG chr10:3101500-14868751: Successfully fit background model for 10,707,821 bp. Use segment r for 0 bp 2025-01-31 10:00:45,969 DEBUG chr10:14868751-16672251: Successfully fit background model for 1,572,437 bp. Use segment r for 0 bp 2025-01-31 10:00:46,432 DEBUG chr7:7300751-12086751: Successfully fit background model for 1,518,551 bp. Use segment r for 3,951 bp 2025-01-31 10:00:46,570 DEBUG chr7:12086751-13459251: Successfully fit background model for 1,124,419 bp. Use segment r for 0 bp 2025-01-31 10:00:46,910 DEBUG chr7:13459251-15895751: Successfully fit background model for 1,427,104 bp. Use segment r for 97 bp 2025-01-31 10:00:47,043 DEBUG chr7:15895751-17220751: Successfully fit background model for 1,256,675 bp. Use segment r for 0 bp 2025-01-31 10:00:47,286 DEBUG chr7:17220751-18888751: Successfully fit background model for 1,166,193 bp. Use segment r for 1,562 bp 2025-01-31 10:00:47,409 DEBUG chr7:18888751-20102001: Successfully fit background model for 1,137,649 bp. Use segment r for 0 bp 2025-01-31 10:00:47,540 DEBUG chr10:16672251-31883001: Successfully fit background model for 13,897,066 bp. Use segment r for 0 bp 2025-01-31 10:00:47,622 DEBUG chr7:22787000-24298751: Successfully fit background model for 842,700 bp. Use segment r for 3,171 bp 2025-01-31 10:00:47,773 DEBUG chr7:24298751-25954751: Successfully fit background model for 1,552,816 bp. Use segment r for 0 bp 2025-01-31 10:00:47,835 DEBUG chr6:9337751-28311001: Successfully fit background model for 16,800,962 bp. Use segment r for 0 bp 2025-01-31 10:00:47,854 DEBUG chr7:25954751-26761751: Successfully fit background model for 631,964 bp. Use segment r for 0 bp 2025-01-31 10:00:48,079 DEBUG chr10:31883001-37998751: Successfully fit background model for 5,530,332 bp. Use segment r for 0 bp 2025-01-31 10:00:48,263 DEBUG chr10:37998751-40084251: Successfully fit background model for 1,910,288 bp. Use segment r for 0 bp 2025-01-31 10:00:48,273 DEBUG chr7:26761751-31144251: Successfully fit background model for 4,064,327 bp. Use segment r for 0 bp 2025-01-31 10:00:48,427 DEBUG chr6:28311001-34861751: Successfully fit background model for 6,259,001 bp. Use segment r for 0 bp 2025-01-31 10:00:48,551 DEBUG chr10:40084251-43530001: Successfully fit background model for 3,308,865 bp. Use segment r for 0 bp 2025-01-31 10:00:48,644 DEBUG chr7:31144251-33783751: Successfully fit background model for 1,050,580 bp. Use segment r for 4,790 bp 2025-01-31 10:00:48,749 DEBUG chr6:34861751-38395251: Successfully fit background model for 3,284,934 bp. Use segment r for 0 bp 2025-01-31 10:00:48,828 DEBUG chr10:43530001-46825501: Successfully fit background model for 3,060,698 bp. Use segment r for 0 bp 2025-01-31 10:00:48,842 DEBUG chr6:38395251-39327751: Successfully fit background model for 917,720 bp. Use segment r for 0 bp 2025-01-31 10:00:49,060 DEBUG chr7:33783751-38272251: Successfully fit background model for 4,323,391 bp. Use segment r for 0 bp 2025-01-31 10:00:49,078 DEBUG chr10:46825501-49853751: Successfully fit background model for 2,655,753 bp. Use segment r for 0 bp 2025-01-31 10:00:49,296 DEBUG chr6:39327751-44169251: Successfully fit background model for 4,334,539 bp. Use segment r for 0 bp 2025-01-31 10:00:49,497 DEBUG chr6:44169251-46411751: Successfully fit background model for 2,030,897 bp. Use segment r for 0 bp 2025-01-31 10:00:49,705 DEBUG chr10:49853751-57019751: Successfully fit background model for 6,370,951 bp. Use segment r for 0 bp 2025-01-31 10:00:49,873 DEBUG chr7:38272251-44245751: Successfully fit background model for 4,393,624 bp. Use segment r for 3,333 bp 2025-01-31 10:00:49,947 DEBUG chr10:57019751-59775751: Successfully fit background model for 2,229,659 bp. Use segment r for 0 bp 2025-01-31 10:00:50,130 DEBUG chr7:44245751-47151751: Successfully fit background model for 2,849,524 bp. Use segment r for 0 bp 2025-01-31 10:00:50,232 DEBUG chr7:47151751-48233251: Successfully fit background model for 862,223 bp. Use segment r for 0 bp 2025-01-31 10:00:50,297 DEBUG chr10:59775751-64002751: Successfully fit background model for 4,057,123 bp. Use segment r for 0 bp 2025-01-31 10:00:50,428 DEBUG chr7:48233251-50442751: Successfully fit background model for 2,024,870 bp. Use segment r for 0 bp 2025-01-31 10:00:50,531 DEBUG chr10:64002751-65822501: Successfully fit background model for 1,603,019 bp. Use segment r for 72,354 bp 2025-01-31 10:00:50,882 DEBUG chr7:50442751-55259751: Successfully fit background model for 4,237,742 bp. Use segment r for 0 bp 2025-01-31 10:00:50,936 DEBUG chr6:46411751-59627251: Successfully fit background model for 12,159,186 bp. Use segment r for 0 bp 2025-01-31 10:00:51,013 DEBUG chr7:55259751-56649751: Successfully fit background model for 1,216,970 bp. Use segment r for 0 bp 2025-01-31 10:00:51,067 DEBUG chr10:65822501-72098251: Successfully fit background model for 5,864,125 bp. Use segment r for 0 bp 2025-01-31 10:00:51,373 DEBUG chr10:72098251-75480751: Successfully fit background model for 3,095,006 bp. Use segment r for 0 bp 2025-01-31 10:00:51,630 DEBUG chr7:56649751-62983001: Successfully fit background model for 5,176,994 bp. Use segment r for 0 bp 2025-01-31 10:00:51,748 DEBUG chr10:75480751-79609251: Successfully fit background model for 3,833,259 bp. Use segment r for 0 bp 2025-01-31 10:00:51,939 DEBUG chr10:79609251-81646751: Successfully fit background model for 2,002,918 bp. Use segment r for 0 bp 2025-01-31 10:00:52,173 DEBUG chr6:59627251-70725751: Successfully fit background model for 9,560,803 bp. Use segment r for 0 bp 2025-01-31 10:00:52,202 DEBUG chr7:62983001-69030001: Successfully fit background model for 5,705,560 bp. Use segment r for 0 bp 2025-01-31 10:00:52,356 DEBUG chr6:70725751-72580251: Successfully fit background model for 1,790,486 bp. Use segment r for 0 bp 2025-01-31 10:00:52,501 DEBUG chr6:72580251-74083751: Successfully fit background model for 1,381,066 bp. Use segment r for 0 bp 2025-01-31 10:00:52,592 DEBUG chr7:69030001-73556751: Successfully fit background model for 4,232,116 bp. Use segment r for 0 bp 2025-01-31 10:00:52,886 DEBUG chr7:73556751-76547751: Successfully fit background model for 2,744,417 bp. Use segment r for 0 bp 2025-01-31 10:00:52,998 DEBUG chr7:76547751-77736001: Successfully fit background model for 1,087,382 bp. Use segment r for 0 bp 2025-01-31 10:00:53,160 DEBUG chr6:74083751-80734751: Successfully fit background model for 5,990,138 bp. Use segment r for 0 bp 2025-01-31 10:00:53,216 DEBUG chr7:77736001-80022251: Successfully fit background model for 2,201,696 bp. Use segment r for 0 bp 2025-01-31 10:00:53,252 DEBUG chr7:80022251-80323751: Successfully fit background model for 297,710 bp. Use segment r for 0 bp 2025-01-31 10:00:53,374 DEBUG chr6:80734751-82982751: Successfully fit background model for 2,052,190 bp. Use segment r for 0 bp 2025-01-31 10:00:53,693 DEBUG chr7:80323751-84876751: Successfully fit background model for 4,307,559 bp. Use segment r for 0 bp 2025-01-31 10:00:53,890 DEBUG chr10:81646751-100752251: Successfully fit background model for 17,552,141 bp. Use segment r for 0 bp 2025-01-31 10:00:54,010 DEBUG chr7:84876751-88541751: Successfully fit background model for 3,256,918 bp. Use segment r for 0 bp 2025-01-31 10:00:54,211 DEBUG chr7:88541751-90772751: Successfully fit background model for 2,021,799 bp. Use segment r for 0 bp 2025-01-31 10:00:54,234 DEBUG chr6:82982751-91881251: Successfully fit background model for 8,412,585 bp. Use segment r for 0 bp 2025-01-31 10:00:54,255 DEBUG chr10:100752251-104784751: Successfully fit background model for 3,631,164 bp. Use segment r for 0 bp 2025-01-31 10:00:54,419 DEBUG chr7:90772751-93097251: Successfully fit background model for 2,177,582 bp. Use segment r for 0 bp 2025-01-31 10:00:54,637 DEBUG chr7:93097251-95573251: Successfully fit background model for 2,187,060 bp. Use segment r for 0 bp 2025-01-31 10:00:54,911 DEBUG chr7:95573251-98655751: Successfully fit background model for 2,931,535 bp. Use segment r for 0 bp 2025-01-31 10:00:55,040 DEBUG chr10:104784751-113390501: Successfully fit background model for 7,937,406 bp. Use segment r for 0 bp 2025-01-31 10:00:55,179 DEBUG chr6:91881251-101906251: Successfully fit background model for 9,546,651 bp. Use segment r for 0 bp 2025-01-31 10:00:55,301 DEBUG chr7:98655751-103107751: Successfully fit background model for 4,291,987 bp. Use segment r for 0 bp 2025-01-31 10:00:55,540 DEBUG chr6:101906251-106040251: Successfully fit background model for 3,730,644 bp. Use segment r for 0 bp 2025-01-31 10:00:55,785 DEBUG chr7:103107751-108462751: Successfully fit background model for 4,214,770 bp. Use segment r for 0 bp 2025-01-31 10:00:56,029 DEBUG chr10:113390501-123897251: Successfully fit background model for 9,864,877 bp. Use segment r for 0 bp 2025-01-31 10:00:56,191 DEBUG chr6:106040251-112899751: Successfully fit background model for 6,221,678 bp. Use segment r for 0 bp 2025-01-31 10:00:56,291 DEBUG chr10:123897251-126889251: Successfully fit background model for 2,780,185 bp. Use segment r for 0 bp 2025-01-31 10:00:56,506 DEBUG chr10:126889251-129377751: Successfully fit background model for 2,339,735 bp. Use segment r for 0 bp 2025-01-31 10:00:56,634 DEBUG chr10:129377751-130694993: Successfully fit background model for 1,020,457 bp. Use segment r for 0 bp 2025-01-31 10:00:57,209 DEBUG chr6:112899751-122724501: Successfully fit background model for 9,140,666 bp. Use segment r for 0 bp 2025-01-31 10:00:57,397 DEBUG chr6:122724501-124655251: Successfully fit background model for 1,436,295 bp. Use segment r for 0 bp 2025-01-31 10:00:57,469 DEBUG chr6:124655251-125308751: Successfully fit background model for 627,312 bp. Use segment r for 0 bp 2025-01-31 10:00:57,621 DEBUG chr7:108462751-125368751: Successfully fit background model for 16,087,922 bp. Use segment r for 0 bp 2025-01-31 10:00:57,882 DEBUG chr6:125308751-129585251: Successfully fit background model for 4,061,191 bp. Use segment r for 0 bp 2025-01-31 10:00:57,913 DEBUG chr7:125368751-128511751: Successfully fit background model for 3,036,576 bp. Use segment r for 0 bp 2025-01-31 10:00:58,271 DEBUG chr6:129585251-133457751: Successfully fit background model for 3,124,954 bp. Use segment r for 0 bp 2025-01-31 10:00:58,747 DEBUG chr6:133457751-138381751: Successfully fit background model for 4,634,389 bp. Use segment r for 0 bp 2025-01-31 10:00:59,078 DEBUG chr6:138381751-141917251: Successfully fit background model for 3,269,388 bp. Use segment r for 0 bp 2025-01-31 10:00:59,620 DEBUG chr7:128511751-140934251: Successfully fit background model for 11,862,803 bp. Use segment r for 0 bp 2025-01-31 10:00:59,857 DEBUG chr6:141917251-149736546: Successfully fit background model for 7,192,958 bp. Use segment r for 0 bp 2025-01-31 10:00:59,902 DEBUG chr8:3070000-4711001: Successfully fit background model for 1,435,060 bp. Use segment r for 0 bp 2025-01-31 10:01:00,072 DEBUG chr7:140934251-145441459: Successfully fit background model for 4,221,656 bp. Use segment r for 0 bp 2025-01-31 10:01:00,140 DEBUG chr8:4711001-7077251: Successfully fit background model for 2,079,620 bp. Use segment r for 0 bp 2025-01-31 10:01:00,380 DEBUG chr8:7077251-9611751: Successfully fit background model for 2,359,135 bp. Use segment r for 0 bp 2025-01-31 10:01:02,589 DEBUG chr14:3006500-5131001: Successfully fit background model for 74,262 bp. Use segment r for 509 bp 2025-01-31 10:01:03,617 DEBUG chr8:9611751-27914751: Successfully fit background model for 15,662,512 bp. Use segment r for 26,815 bp 2025-01-31 10:01:03,863 DEBUG chr8:27914751-30402251: Successfully fit background model for 2,190,695 bp. Use segment r for 0 bp 2025-01-31 10:01:04,562 DEBUG chr8:30402251-37131751: Successfully fit background model for 6,319,649 bp. Use segment r for 0 bp 2025-01-31 10:01:05,034 DEBUG chr14:5838000-19638751: Successfully fit background model for 10,885,538 bp. Use segment r for 2,732 bp 2025-01-31 10:01:05,180 DEBUG chr8:37131751-43878751: Successfully fit background model for 5,954,839 bp. Use segment r for 0 bp 2025-01-31 10:01:05,689 DEBUG chr8:43878751-49096251: Successfully fit background model for 4,930,066 bp. Use segment r for 0 bp 2025-01-31 10:01:06,051 DEBUG chr8:49096251-53106751: Successfully fit background model for 3,646,007 bp. Use segment r for 0 bp 2025-01-31 10:01:06,760 DEBUG chr14:19638751-34611251: Successfully fit background model for 13,982,356 bp. Use segment r for 0 bp 2025-01-31 10:01:06,833 DEBUG chr8:53106751-60802501: Successfully fit background model for 6,552,756 bp. Use segment r for 0 bp 2025-01-31 10:01:06,867 DEBUG chr8:60802501-61002501: Successfully fit background model for 180,310 bp. Use segment r for 0 bp 2025-01-31 10:01:07,846 DEBUG chr8:61002501-69611251: Successfully fit background model for 7,690,289 bp. Use segment r for 0 bp 2025-01-31 10:01:07,982 DEBUG chr8:69611251-70907251: Successfully fit background model for 1,249,843 bp. Use segment r for 0 bp 2025-01-31 10:01:08,230 DEBUG chr8:70907251-72443251: Successfully fit background model for 1,288,950 bp. Use segment r for 0 bp 2025-01-31 10:01:09,570 DEBUG chr8:72443251-83565751: Successfully fit background model for 10,098,914 bp. Use segment r for 0 bp 2025-01-31 10:01:09,715 DEBUG chr8:83565751-84900751: Successfully fit background model for 1,311,176 bp. Use segment r for 0 bp 2025-01-31 10:01:09,749 DEBUG chr14:34611251-50784751: Successfully fit background model for 12,293,301 bp. Use segment r for 3,753 bp 2025-01-31 10:01:10,746 DEBUG chr8:84900751-94106251: Successfully fit background model for 8,796,029 bp. Use segment r for 0 bp 2025-01-31 10:01:10,976 DEBUG chr8:94106251-96378751: Successfully fit background model for 2,159,174 bp. Use segment r for 0 bp 2025-01-31 10:01:11,306 DEBUG chr14:50784751-65338751: Successfully fit background model for 12,956,551 bp. Use segment r for 0 bp 2025-01-31 10:01:11,636 DEBUG chr8:96378751-102895251: Successfully fit background model for 5,957,261 bp. Use segment r for 0 bp 2025-01-31 10:01:11,695 DEBUG chr14:65338751-69232751: Successfully fit background model for 3,721,574 bp. Use segment r for 0 bp 2025-01-31 10:01:11,842 DEBUG chr14:69232751-70575751: Successfully fit background model for 887,313 bp. Use segment r for 0 bp 2025-01-31 10:01:11,869 DEBUG chr8:102895251-105249751: Successfully fit background model for 2,163,426 bp. Use segment r for 0 bp 2025-01-31 10:01:12,083 DEBUG chr8:105249751-107351751: Successfully fit background model for 2,034,392 bp. Use segment r for 0 bp 2025-01-31 10:01:12,896 DEBUG chr9:3002500-13288251: Successfully fit background model for 9,005,347 bp. Use segment r for 0 bp 2025-01-31 10:01:13,111 DEBUG chr9:13288251-15438751: Successfully fit background model for 1,963,519 bp. Use segment r for 0 bp 2025-01-31 10:01:13,118 DEBUG chr14:70575751-80784251: Successfully fit background model for 9,555,690 bp. Use segment r for 0 bp 2025-01-31 10:01:13,617 DEBUG chr14:80784251-85570501: Successfully fit background model for 4,277,624 bp. Use segment r for 0 bp 2025-01-31 10:01:13,628 DEBUG chr9:15438751-20525251: Successfully fit background model for 4,478,932 bp. Use segment r for 0 bp 2025-01-31 10:01:13,741 DEBUG chr8:107351751-116866251: Successfully fit background model for 8,917,997 bp. Use segment r for 287,219 bp 2025-01-31 10:01:13,769 DEBUG chr9:20525251-21946751: Successfully fit background model for 1,369,051 bp. Use segment r for 0 bp 2025-01-31 10:01:13,897 DEBUG chr14:85570501-88483751: Successfully fit background model for 2,637,508 bp. Use segment r for 0 bp 2025-01-31 10:01:13,995 DEBUG chr8:116866251-119393251: Successfully fit background model for 2,453,122 bp. Use segment r for 0 bp 2025-01-31 10:01:14,136 DEBUG chr9:21946751-25617251: Successfully fit background model for 3,388,008 bp. Use segment r for 0 bp 2025-01-31 10:01:14,626 DEBUG chr8:119393251-124331751: Successfully fit background model for 4,721,744 bp. Use segment r for 0 bp 2025-01-31 10:01:14,996 DEBUG chr14:88483751-98033251: Successfully fit background model for 8,695,130 bp. Use segment r for 0 bp 2025-01-31 10:01:15,034 DEBUG chr9:25617251-33936251: Successfully fit background model for 7,884,340 bp. Use segment r for 0 bp 2025-01-31 10:01:15,201 DEBUG chr8:124331751-129401213: Successfully fit background model for 4,702,416 bp. Use segment r for 0 bp 2025-01-31 10:01:15,558 DEBUG chr9:33936251-37985751: Successfully fit background model for 3,704,815 bp. Use segment r for 0 bp 2025-01-31 10:01:15,785 DEBUG chr9:37985751-39887751: Successfully fit background model for 1,694,219 bp. Use segment r for 0 bp 2025-01-31 10:01:15,841 DEBUG chr14:98033251-106052751: Successfully fit background model for 7,420,805 bp. Use segment r for 0 bp 2025-01-31 10:01:16,197 DEBUG chr9:39887751-43129251: Successfully fit background model for 3,123,914 bp. Use segment r for 0 bp 2025-01-31 10:01:16,534 DEBUG chr9:43129251-45775251: Successfully fit background model for 2,594,687 bp. Use segment r for 0 bp 2025-01-31 10:01:16,901 DEBUG chr14:106052751-116243751: Successfully fit background model for 9,168,912 bp. Use segment r for 0 bp 2025-01-31 10:01:18,129 DEBUG chr14:116243751-124902244: Successfully fit background model for 7,843,926 bp. Use segment r for 0 bp 2025-01-31 10:01:18,211 DEBUG chr9:45775251-56920251: Successfully fit background model for 10,615,701 bp. Use segment r for 0 bp 2025-01-31 10:01:19,209 DEBUG chr9:56920251-66055751: Successfully fit background model for 8,893,036 bp. Use segment r for 0 bp 2025-01-31 10:01:20,688 DEBUG chr9:66055751-78892251: Successfully fit background model for 12,140,867 bp. Use segment r for 0 bp 2025-01-31 10:01:23,007 DEBUG chr9:78892251-90583751: Successfully fit background model for 10,225,800 bp. Use segment r for 169 bp 2025-01-31 10:01:23,367 DEBUG chr9:90583751-93928751: Successfully fit background model for 2,970,736 bp. Use segment r for 0 bp 2025-01-31 10:01:25,055 DEBUG chr9:93928751-106189251: Successfully fit background model for 11,695,743 bp. Use segment r for 0 bp 2025-01-31 10:01:25,504 DEBUG chr9:106189251-110677501: Successfully fit background model for 4,135,337 bp. Use segment r for 0 bp 2025-01-31 10:01:26,779 DEBUG chr9:110677501-120013251: Successfully fit background model for 8,834,587 bp. Use segment r for 0 bp 2025-01-31 10:01:27,237 DEBUG chr9:120013251-124595110: Successfully fit background model for 4,064,078 bp. Use segment r for 0 bp 2025-01-31 10:02:21,468 DEBUG chr11:3100500-3203251: Successfully fit background model for 75,714 bp. Use segment r for 0 bp 2025-01-31 10:02:21,802 DEBUG chr11:3203251-6718251: Successfully fit background model for 3,380,244 bp. Use segment r for 0 bp 2025-01-31 10:02:22,356 DEBUG chr11:6718251-12584751: Successfully fit background model for 5,275,426 bp. Use segment r for 0 bp 2025-01-31 10:02:22,954 DEBUG chr11:12584751-19250251: Successfully fit background model for 5,965,367 bp. Use segment r for 0 bp 2025-01-31 10:02:23,433 DEBUG chr11:19250251-24339251: Successfully fit background model for 4,806,615 bp. Use segment r for 0 bp 2025-01-31 10:02:23,819 DEBUG chr11:24339251-28675251: Successfully fit background model for 3,890,075 bp. Use segment r for 0 bp 2025-01-31 10:02:24,567 DEBUG chr11:28675251-36350251: Successfully fit background model for 7,130,639 bp. Use segment r for 0 bp 2025-01-31 10:02:25,565 DEBUG chr11:36350251-43470251: Successfully fit background model for 6,598,054 bp. Use segment r for 0 bp 2025-01-31 10:02:26,072 DEBUG chr11:43470251-48771751: Successfully fit background model for 4,936,270 bp. Use segment r for 0 bp 2025-01-31 10:02:26,098 DEBUG chr11:48771751-48875251: Successfully fit background model for 100,529 bp. Use segment r for 0 bp 2025-01-31 10:02:27,279 DEBUG chr11:48875251-58903251: Successfully fit background model for 9,415,377 bp. Use segment r for 0 bp 2025-01-31 10:02:27,477 DEBUG chr11:58903251-60924251: Successfully fit background model for 1,885,120 bp. Use segment r for 0 bp 2025-01-31 10:02:28,302 DEBUG chr11:60924251-69028751: Successfully fit background model for 7,835,120 bp. Use segment r for 0 bp 2025-01-31 10:02:28,514 DEBUG chr11:69028751-70703251: Successfully fit background model for 1,636,045 bp. Use segment r for 0 bp 2025-01-31 10:02:29,019 DEBUG chr11:70703251-74829751: Successfully fit background model for 3,790,315 bp. Use segment r for 0 bp 2025-01-31 10:02:29,491 DEBUG chr11:74829751-79603751: Successfully fit background model for 4,640,579 bp. Use segment r for 0 bp 2025-01-31 10:02:30,817 DEBUG chr11:79603751-90802251: Successfully fit background model for 10,764,279 bp. Use segment r for 0 bp 2025-01-31 10:02:31,055 DEBUG chr11:90802251-93175501: Successfully fit background model for 2,178,578 bp. Use segment r for 0 bp 2025-01-31 10:02:31,153 DEBUG chr11:93175501-94129251: Successfully fit background model for 908,122 bp. Use segment r for 0 bp 2025-01-31 10:02:32,254 DEBUG chr11:94129251-103063251: Successfully fit background model for 8,689,499 bp. Use segment r for 0 bp 2025-01-31 10:02:32,990 DEBUG chr11:103063251-110538251: Successfully fit background model for 7,181,646 bp. Use segment r for 0 bp 2025-01-31 10:02:33,412 DEBUG chr11:110538251-115151751: Successfully fit background model for 4,431,187 bp. Use segment r for 0 bp 2025-01-31 10:02:34,044 DEBUG chr11:115151751-122082543: Successfully fit background model for 6,615,205 bp. Use segment r for 0 bp 2025-01-31 10:02:35,534 DEBUG chr13:3000500-8532251: Successfully fit background model for 4,834,044 bp. Use segment r for 0 bp 2025-01-31 10:02:36,991 DEBUG chr13:8532251-21157751: Successfully fit background model for 11,090,138 bp. Use segment r for 0 bp 2025-01-31 10:02:37,096 DEBUG chr13:21157751-22056251: Successfully fit background model for 805,283 bp. Use segment r for 0 bp 2025-01-31 10:02:37,247 DEBUG chr13:22056251-23395251: Successfully fit background model for 1,021,086 bp. Use segment r for 0 bp 2025-01-31 10:02:37,273 DEBUG chr13:23395251-23619251: Successfully fit background model for 215,344 bp. Use segment r for 0 bp 2025-01-31 10:02:37,462 DEBUG chr13:23619251-25569251: Successfully fit background model for 1,816,010 bp. Use segment r for 0 bp 2025-01-31 10:02:37,684 DEBUG chr13:25569251-27800751: Successfully fit background model for 2,019,340 bp. Use segment r for 0 bp 2025-01-31 10:02:37,936 DEBUG chr12:3000500-5443751: Successfully fit background model for 2,249,434 bp. Use segment r for 0 bp 2025-01-31 10:02:38,489 DEBUG chr15:3050500-5097251: Successfully fit background model for 1,741,917 bp. Use segment r for 0 bp 2025-01-31 10:02:39,074 DEBUG chr12:5443751-15169251: Successfully fit background model for 8,834,965 bp. Use segment r for 0 bp 2025-01-31 10:02:39,251 DEBUG chr16:3092500-6114251: Successfully fit background model for 2,567,161 bp. Use segment r for 0 bp 2025-01-31 10:02:39,415 DEBUG chr15:5097251-13622251: Successfully fit background model for 7,863,629 bp. Use segment r for 0 bp 2025-01-31 10:02:39,467 DEBUG chr16:6114251-8406751: Successfully fit background model for 2,165,563 bp. Use segment r for 0 bp 2025-01-31 10:02:40,080 DEBUG chr13:27800751-48641751: Successfully fit background model for 19,534,414 bp. Use segment r for 0 bp 2025-01-31 10:02:40,092 DEBUG chr16:8406751-14538251: Successfully fit background model for 5,802,201 bp. Use segment r for 0 bp 2025-01-31 10:02:40,173 DEBUG chr13:48641751-49226251: Successfully fit background model for 575,888 bp. Use segment r for 0 bp 2025-01-31 10:02:40,334 DEBUG chr16:14538251-17066751: Successfully fit background model for 2,206,573 bp. Use segment r for 0 bp 2025-01-31 10:02:40,517 DEBUG chr16:17066751-18978251: Successfully fit background model for 1,844,057 bp. Use segment r for 0 bp 2025-01-31 10:02:40,594 DEBUG chr16:18978251-19673001: Successfully fit background model for 552,226 bp. Use segment r for 0 bp 2025-01-31 10:02:40,701 DEBUG chr13:49226251-54457251: Successfully fit background model for 4,624,380 bp. Use segment r for 0 bp 2025-01-31 10:02:40,814 DEBUG chr13:54457251-55566751: Successfully fit background model for 1,070,183 bp. Use segment r for 0 bp 2025-01-31 10:02:40,884 DEBUG chr15:13622251-27312251: Successfully fit background model for 12,279,005 bp. Use segment r for 0 bp 2025-01-31 10:02:40,930 DEBUG chr15:27312251-27589251: Successfully fit background model for 260,252 bp. Use segment r for 0 bp 2025-01-31 10:02:40,957 DEBUG chr16:19673001-23310251: Successfully fit background model for 3,391,073 bp. Use segment r for 0 bp 2025-01-31 10:02:41,064 DEBUG chr13:55566751-58004751: Successfully fit background model for 2,379,972 bp. Use segment r for 0 bp 2025-01-31 10:02:41,275 DEBUG chr15:27589251-31124251: Successfully fit background model for 3,224,582 bp. Use segment r for 0 bp 2025-01-31 10:02:41,338 DEBUG chr13:58004751-60943251: Successfully fit background model for 2,811,183 bp. Use segment r for 0 bp 2025-01-31 10:02:41,386 DEBUG chr16:23310251-28110251: Successfully fit background model for 4,508,339 bp. Use segment r for 0 bp 2025-01-31 10:02:41,653 DEBUG chr13:60943251-63154251: Successfully fit background model for 1,667,497 bp. Use segment r for 30,162 bp 2025-01-31 10:02:41,724 DEBUG chr15:31124251-36080251: Successfully fit background model for 4,462,634 bp. Use segment r for 0 bp 2025-01-31 10:02:41,750 DEBUG chr13:63154251-64152251: Successfully fit background model for 956,857 bp. Use segment r for 0 bp 2025-01-31 10:02:41,764 DEBUG chr16:28110251-32371251: Successfully fit background model for 4,044,413 bp. Use segment r for 0 bp 2025-01-31 10:02:41,821 DEBUG chr15:36080251-37044251: Successfully fit background model for 922,764 bp. Use segment r for 0 bp 2025-01-31 10:02:42,344 DEBUG chr15:37044251-42592751: Successfully fit background model for 5,064,772 bp. Use segment r for 0 bp 2025-01-31 10:02:42,452 DEBUG chr16:32371251-39418751: Successfully fit background model for 6,735,669 bp. Use segment r for 0 bp 2025-01-31 10:02:42,564 DEBUG chr15:42592751-45008501: Successfully fit background model for 2,155,152 bp. Use segment r for 0 bp 2025-01-31 10:02:42,805 DEBUG chr12:15169251-36534751: Successfully fit background model for 16,096,169 bp. Use segment r for 906 bp 2025-01-31 10:02:43,093 DEBUG chr12:36534751-39245751: Successfully fit background model for 2,496,908 bp. Use segment r for 0 bp 2025-01-31 10:02:43,230 DEBUG chr15:45008501-51702751: Successfully fit background model for 6,044,794 bp. Use segment r for 0 bp 2025-01-31 10:02:43,332 DEBUG chr13:64152251-73247251: Successfully fit background model for 7,004,720 bp. Use segment r for 60 bp 2025-01-31 10:02:43,428 DEBUG chr13:73247251-74004251: Successfully fit background model for 744,297 bp. Use segment r for 0 bp 2025-01-31 10:02:43,556 DEBUG chr12:39245751-42272251: Successfully fit background model for 2,667,332 bp. Use segment r for 132,046 bp 2025-01-31 10:02:43,672 DEBUG chr16:39418751-51072251: Successfully fit background model for 10,713,940 bp. Use segment r for 0 bp 2025-01-31 10:02:43,762 DEBUG chr15:51702751-57496251: Successfully fit background model for 5,272,278 bp. Use segment r for 0 bp 2025-01-31 10:02:43,890 DEBUG chr13:74004251-78664251: Successfully fit background model for 4,150,675 bp. Use segment r for 0 bp 2025-01-31 10:02:43,955 DEBUG chr15:57496251-59529251: Successfully fit background model for 1,964,651 bp. Use segment r for 0 bp 2025-01-31 10:02:44,103 DEBUG chr13:78664251-80881751: Successfully fit background model for 1,993,678 bp. Use segment r for 0 bp 2025-01-31 10:02:44,113 DEBUG chr16:51072251-55819751: Successfully fit background model for 4,233,210 bp. Use segment r for 0 bp 2025-01-31 10:02:44,237 DEBUG chr13:80881751-82207751: Successfully fit background model for 1,226,431 bp. Use segment r for 0 bp 2025-01-31 10:02:44,276 DEBUG chr12:42272251-48935001: Successfully fit background model for 5,941,451 bp. Use segment r for 0 bp 2025-01-31 10:02:44,375 DEBUG chr15:59529251-63993251: Successfully fit background model for 4,048,237 bp. Use segment r for 0 bp 2025-01-31 10:02:44,411 DEBUG chr16:55819751-58906751: Successfully fit background model for 2,759,013 bp. Use segment r for 0 bp 2025-01-31 10:02:44,466 DEBUG chr13:82207751-84398251: Successfully fit background model for 2,036,026 bp. Use segment r for 0 bp 2025-01-31 10:02:44,657 DEBUG chr15:63993251-66973251: Successfully fit background model for 2,736,232 bp. Use segment r for 0 bp 2025-01-31 10:02:44,926 DEBUG chr16:58906751-64238251: Successfully fit background model for 4,743,533 bp. Use segment r for 0 bp 2025-01-31 10:02:45,224 DEBUG chr13:84398251-90155251: Successfully fit background model for 5,101,379 bp. Use segment r for 0 bp 2025-01-31 10:02:45,624 DEBUG chr12:48935001-59918251: Successfully fit background model for 9,874,868 bp. Use segment r for 0 bp 2025-01-31 10:02:45,625 DEBUG chr15:66973251-72884251: Successfully fit background model for 5,440,712 bp. Use segment r for 0 bp 2025-01-31 10:02:45,994 DEBUG chr15:72884251-75653251: Successfully fit background model for 2,592,754 bp. Use segment r for 0 bp 2025-01-31 10:02:46,019 DEBUG chr12:59918251-64005751: Successfully fit background model for 3,587,774 bp. Use segment r for 0 bp 2025-01-31 10:02:46,224 DEBUG chr13:90155251-96927751: Successfully fit background model for 6,359,407 bp. Use segment r for 0 bp 2025-01-31 10:02:46,525 DEBUG chr12:64005751-69119751: Successfully fit background model for 4,612,677 bp. Use segment r for 0 bp 2025-01-31 10:02:46,716 DEBUG chr15:75653251-82385751: Successfully fit background model for 6,445,332 bp. Use segment r for 0 bp 2025-01-31 10:02:46,797 DEBUG chr12:69119751-71870251: Successfully fit background model for 2,638,071 bp. Use segment r for 0 bp 2025-01-31 10:02:46,934 DEBUG chr13:96927751-100650251: Successfully fit background model for 3,491,246 bp. Use segment r for 0 bp 2025-01-31 10:02:47,053 DEBUG chr15:82385751-85876751: Successfully fit background model for 3,330,051 bp. Use segment r for 0 bp 2025-01-31 10:02:47,219 DEBUG chr12:71870251-76234251: Successfully fit background model for 4,139,126 bp. Use segment r for 0 bp 2025-01-31 10:02:47,274 DEBUG chr12:76234251-76706251: Successfully fit background model for 460,372 bp. Use segment r for 0 bp 2025-01-31 10:02:47,336 DEBUG chr15:85876751-88800251: Successfully fit background model for 2,835,679 bp. Use segment r for 0 bp 2025-01-31 10:02:47,393 DEBUG chr15:88800251-89352251: Successfully fit background model for 532,479 bp. Use segment r for 0 bp 2025-01-31 10:02:47,524 DEBUG chr16:64238251-87362251: Successfully fit background model for 21,013,510 bp. Use segment r for 0 bp 2025-01-31 10:02:47,606 DEBUG chr12:76706251-79839501: Successfully fit background model for 2,927,973 bp. Use segment r for 0 bp 2025-01-31 10:02:47,822 DEBUG chr16:87362251-90052251: Successfully fit background model for 2,517,557 bp. Use segment r for 0 bp 2025-01-31 10:02:48,268 DEBUG chr16:90052251-94473251: Successfully fit background model for 4,288,012 bp. Use segment r for 0 bp 2025-01-31 10:02:48,358 DEBUG chr12:79839501-87036251: Successfully fit background model for 6,895,273 bp. Use segment r for 0 bp 2025-01-31 10:02:48,439 DEBUG chr15:89352251-98500251: Successfully fit background model for 8,638,800 bp. Use segment r for 0 bp 2025-01-31 10:02:48,624 DEBUG chr16:94473251-98207768: Successfully fit background model for 3,475,502 bp. Use segment r for 0 bp 2025-01-31 10:02:48,859 DEBUG chr12:87036251-92270751: Successfully fit background model for 4,477,051 bp. Use segment r for 0 bp 2025-01-31 10:02:48,931 DEBUG chr15:98500251-103360751: Successfully fit background model for 4,707,260 bp. Use segment r for 0 bp 2025-01-31 10:02:49,013 DEBUG chr15:103360751-104043685: Successfully fit background model for 435,803 bp. Use segment r for 0 bp 2025-01-31 10:02:49,449 DEBUG chr12:92270751-97512001: Successfully fit background model for 4,722,728 bp. Use segment r for 0 bp 2025-01-31 10:02:49,631 DEBUG chr12:97512001-99192251: Successfully fit background model for 1,551,421 bp. Use segment r for 0 bp 2025-01-31 10:02:50,072 DEBUG chr13:100650251-115205251: Successfully fit background model for 13,613,945 bp. Use segment r for 0 bp 2025-01-31 10:02:50,114 DEBUG chr17:3002000-16076501: Successfully fit background model for 11,028,772 bp. Use segment r for 0 bp 2025-01-31 10:02:50,341 DEBUG chr12:99192251-105782751: Successfully fit background model for 6,187,907 bp. Use segment r for 0 bp 2025-01-31 10:02:50,409 DEBUG chr13:115205251-118037251: Successfully fit background model for 2,626,595 bp. Use segment r for 0 bp 2025-01-31 10:02:50,649 DEBUG chr13:118037251-120421639: Successfully fit background model for 1,638,636 bp. Use segment r for 0 bp 2025-01-31 10:02:50,777 DEBUG chr12:105782751-110393751: Successfully fit background model for 4,466,987 bp. Use segment r for 0 bp 2025-01-31 10:02:51,030 DEBUG chr12:110393751-113059751: Successfully fit background model for 2,593,629 bp. Use segment r for 0 bp 2025-01-31 10:02:51,123 DEBUG chr12:113059751-113932751: Successfully fit background model for 757,461 bp. Use segment r for 0 bp 2025-01-31 10:02:51,252 DEBUG chr12:113932751-115199251: Successfully fit background model for 1,087,424 bp. Use segment r for 0 bp 2025-01-31 10:02:51,294 DEBUG chr17:16076501-23534751: Successfully fit background model for 6,133,492 bp. Use segment r for 210 bp 2025-01-31 10:02:51,758 DEBUG chr12:115199251-120129022: Successfully fit background model for 4,288,085 bp. Use segment r for 0 bp 2025-01-31 10:02:51,855 DEBUG chr17:23534751-29556251: Successfully fit background model for 5,831,231 bp. Use segment r for 0 bp 2025-01-31 10:02:52,679 DEBUG chr17:29556251-37282751: Successfully fit background model for 7,107,340 bp. Use segment r for 0 bp 2025-01-31 10:02:52,953 DEBUG chr17:37282751-40052251: Successfully fit background model for 2,347,941 bp. Use segment r for 0 bp 2025-01-31 10:02:53,469 DEBUG chr17:40052251-45432251: Successfully fit background model for 4,862,825 bp. Use segment r for 0 bp 2025-01-31 10:02:53,707 DEBUG chr17:45432251-47920251: Successfully fit background model for 2,430,176 bp. Use segment r for 0 bp 2025-01-31 10:02:54,104 DEBUG chr17:47920251-52255001: Successfully fit background model for 4,160,428 bp. Use segment r for 0 bp 2025-01-31 10:02:54,448 DEBUG chr17:52255001-55931751: Successfully fit background model for 3,169,606 bp. Use segment r for 0 bp 2025-01-31 10:02:54,604 DEBUG chr17:55931751-57495251: Successfully fit background model for 1,498,201 bp. Use segment r for 0 bp 2025-01-31 10:02:54,981 DEBUG chr17:57495251-61169751: Successfully fit background model for 3,285,833 bp. Use segment r for 0 bp 2025-01-31 10:02:56,678 DEBUG chr17:61169751-75958251: Successfully fit background model for 13,877,629 bp. Use segment r for 0 bp 2025-01-31 10:02:56,843 DEBUG chr17:75958251-77670251: Successfully fit background model for 1,573,444 bp. Use segment r for 0 bp 2025-01-31 10:02:58,033 DEBUG chr17:77670251-89202751: Successfully fit background model for 10,954,881 bp. Use segment r for 0 bp 2025-01-31 10:02:58,697 DEBUG chr17:89202751-94987271: Successfully fit background model for 5,139,887 bp. Use segment r for 0 bp 2025-01-31 10:03:52,819 DEBUG chr19:3080000-7618251: Successfully fit background model for 4,234,014 bp. Use segment r for 0 bp 2025-01-31 10:03:52,887 DEBUG chr19:7618251-8198251: Successfully fit background model for 433,140 bp. Use segment r for 0 bp 2025-01-31 10:03:53,180 DEBUG chr19:8198251-10996751: Successfully fit background model for 2,346,595 bp. Use segment r for 0 bp 2025-01-31 10:03:53,621 DEBUG chr19:10996751-15628251: Successfully fit background model for 4,203,465 bp. Use segment r for 0 bp 2025-01-31 10:03:53,814 DEBUG chr19:15628251-17558251: Successfully fit background model for 1,848,330 bp. Use segment r for 0 bp 2025-01-31 10:03:54,400 DEBUG chr19:17558251-23091751: Successfully fit background model for 5,152,182 bp. Use segment r for 0 bp 2025-01-31 10:03:54,563 DEBUG chr18:3000500-17349501: Successfully fit background model for 13,041,413 bp. Use segment r for 0 bp 2025-01-31 10:03:54,751 DEBUG chr18:17349501-18959751: Successfully fit background model for 1,428,455 bp. Use segment r for 0 bp 2025-01-31 10:03:55,513 DEBUG chr19:23091751-33386751: Successfully fit background model for 9,844,085 bp. Use segment r for 0 bp 2025-01-31 10:03:55,536 DEBUG chr18:18959751-26358751: Successfully fit background model for 6,816,493 bp. Use segment r for 0 bp 2025-01-31 10:03:55,742 DEBUG chr19:33386751-35653501: Successfully fit background model for 1,982,357 bp. Use segment r for 0 bp 2025-01-31 10:03:56,044 DEBUG chr18:26358751-31760751: Successfully fit background model for 4,976,231 bp. Use segment r for 0 bp 2025-01-31 10:03:56,074 DEBUG chr19:35653501-39021751: Successfully fit background model for 3,227,827 bp. Use segment r for 0 bp 2025-01-31 10:03:56,162 DEBUG chr19:39021751-39873501: Successfully fit background model for 616,879 bp. Use segment r for 0 bp 2025-01-31 10:03:56,295 DEBUG chr18:31760751-34315251: Successfully fit background model for 2,366,130 bp. Use segment r for 0 bp 2025-01-31 10:03:56,336 DEBUG chr19:39873501-41734251: Successfully fit background model for 1,744,807 bp. Use segment r for 0 bp 2025-01-31 10:03:56,536 DEBUG chr18:34315251-36565751: Successfully fit background model for 2,198,456 bp. Use segment r for 0 bp 2025-01-31 10:03:56,913 DEBUG chr19:41734251-46956251: Successfully fit background model for 5,050,154 bp. Use segment r for 0 bp 2025-01-31 10:03:57,139 DEBUG chr19:46956251-49329751: Successfully fit background model for 2,271,580 bp. Use segment r for 0 bp 2025-01-31 10:03:57,417 DEBUG chr19:49329751-52385251: Successfully fit background model for 2,808,537 bp. Use segment r for 0 bp 2025-01-31 10:03:58,393 DEBUG chr19:52385251-61431566: Successfully fit background model for 8,582,785 bp. Use segment r for 0 bp 2025-01-31 10:03:59,462 DEBUG chr18:36565751-60490251: Successfully fit background model for 22,154,147 bp. Use segment r for 0 bp 2025-01-31 10:03:59,613 DEBUG chr18:60490251-61607751: Successfully fit background model for 1,095,171 bp. Use segment r for 0 bp 2025-01-31 10:04:00,757 DEBUG chr18:61607751-71313251: Successfully fit background model for 9,203,186 bp. Use segment r for 0 bp 2025-01-31 10:04:00,992 DEBUG chr18:71313251-73702751: Successfully fit background model for 2,212,367 bp. Use segment r for 0 bp 2025-01-31 10:04:01,404 DEBUG chr18:73702751-78031751: Successfully fit background model for 4,069,859 bp. Use segment r for 0 bp 2025-01-31 10:04:02,147 DEBUG chr18:78031751-85605251: Successfully fit background model for 7,104,570 bp. Use segment r for 0 bp 2025-01-31 10:04:02,608 DEBUG chr18:85605251-90702639: Successfully fit background model for 4,313,707 bp. Use segment r for 0 bp 2025-01-31 10:05:12,393 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:05:12,394 INFO Calculating per-bp p-values 2025-01-31 10:05:12,395 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:05:12,463 DEBUG chr1: Calculating p-values 2025-01-31 10:05:12,467 DEBUG chr3: Calculating p-values 2025-01-31 10:05:12,467 DEBUG chr2: Calculating p-values 2025-01-31 10:05:12,468 DEBUG chrX: Calculating p-values 2025-01-31 10:05:12,469 DEBUG chr4: Calculating p-values 2025-01-31 10:05:12,470 DEBUG chr5: Calculating p-values 2025-01-31 10:05:45,331 DEBUG Saving p-values for chrX 2025-01-31 10:05:50,414 DEBUG Saving p-values for chr3 2025-01-31 10:05:55,390 DEBUG Saving p-values for chr5 2025-01-31 10:05:56,738 DEBUG Saving p-values for chr4 2025-01-31 10:06:06,069 DEBUG Saving p-values for chr2 2025-01-31 10:06:11,992 DEBUG Saving p-values for chr1 2025-01-31 10:06:13,010 DEBUG chr6: Calculating p-values 2025-01-31 10:06:18,683 DEBUG chr7: Calculating p-values 2025-01-31 10:06:21,883 DEBUG chr10: Calculating p-values 2025-01-31 10:06:26,758 DEBUG chr8: Calculating p-values 2025-01-31 10:06:40,643 DEBUG chr14: Calculating p-values 2025-01-31 10:06:48,047 DEBUG chr9: Calculating p-values 2025-01-31 10:06:49,086 DEBUG Saving p-values for chr6 2025-01-31 10:06:55,444 DEBUG Saving p-values for chr10 2025-01-31 10:06:59,970 DEBUG Saving p-values for chr7 2025-01-31 10:07:03,044 DEBUG Saving p-values for chr8 2025-01-31 10:07:10,488 DEBUG Saving p-values for chr14 2025-01-31 10:07:17,275 DEBUG chr11: Calculating p-values 2025-01-31 10:07:18,302 DEBUG chr13: Calculating p-values 2025-01-31 10:07:25,323 DEBUG Saving p-values for chr9 2025-01-31 10:07:30,984 DEBUG chr12: Calculating p-values 2025-01-31 10:07:30,998 DEBUG chr15: Calculating p-values 2025-01-31 10:07:34,195 DEBUG chr16: Calculating p-values 2025-01-31 10:07:50,325 DEBUG chr17: Calculating p-values 2025-01-31 10:08:03,067 DEBUG Saving p-values for chr16 2025-01-31 10:08:04,186 DEBUG Saving p-values for chr12 2025-01-31 10:08:05,571 DEBUG Saving p-values for chr11 2025-01-31 10:08:07,823 DEBUG Saving p-values for chr13 2025-01-31 10:08:14,429 DEBUG Saving p-values for chr15 2025-01-31 10:08:22,682 DEBUG chrY: Calculating p-values 2025-01-31 10:08:24,556 DEBUG Saving p-values for chr17 2025-01-31 10:08:25,341 DEBUG chr18: Calculating p-values 2025-01-31 10:08:26,396 DEBUG chr19: Calculating p-values 2025-01-31 10:08:43,959 DEBUG Saving p-values for chr18 2025-01-31 10:08:44,596 DEBUG Saving p-values for chr19 2025-01-31 10:09:06,651 DEBUG Results of calc_pvals emitted. 2025-01-31 10:09:06,651 INFO Converting threshold values to bigwig 2025-01-31 10:09:06,651 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:09:24,957 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:09:55,790 INFO Converting background quantile values to bigwig 2025-01-31 10:09:55,790 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:10:39,184 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:11:07,449 INFO Calculating per-bp FDRs 2025-01-31 10:11:07,451 DEBUG AG81963: Extracting raw P-values 2025-01-31 10:11:42,814 DEBUG AG81963: Computing FDR 2025-01-31 10:11:55,853 DEBUG AG81963: Saving FDRs to parquet 2025-01-31 10:12:40,132 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:12:40,136 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:12:40,136 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:12:43,601 DEBUG chr5: Calling hotspots 2025-01-31 10:12:43,692 DEBUG chr4: Calling hotspots 2025-01-31 10:12:43,711 DEBUG chr3: Calling hotspots 2025-01-31 10:12:44,368 DEBUG chrX: Calling hotspots 2025-01-31 10:12:44,549 DEBUG chr1: Calling hotspots 2025-01-31 10:12:44,640 DEBUG chr2: Calling hotspots 2025-01-31 10:12:47,187 DEBUG chr3: 2438 hotspots called 2025-01-31 10:12:47,367 DEBUG chr5: 3248 hotspots called 2025-01-31 10:12:47,525 DEBUG chr4: 3378 hotspots called 2025-01-31 10:12:48,680 DEBUG chrX: 1954 hotspots called 2025-01-31 10:12:48,946 DEBUG chr1: 3185 hotspots called 2025-01-31 10:12:49,316 DEBUG chr2: 4041 hotspots called 2025-01-31 10:12:49,854 DEBUG chr10: Calling hotspots 2025-01-31 10:12:49,973 DEBUG chr7: Calling hotspots 2025-01-31 10:12:50,102 DEBUG chr6: Calling hotspots 2025-01-31 10:12:50,967 DEBUG chr14: Calling hotspots 2025-01-31 10:12:51,019 DEBUG chr8: Calling hotspots 2025-01-31 10:12:51,458 DEBUG chr9: Calling hotspots 2025-01-31 10:12:52,940 DEBUG chr10: 2355 hotspots called 2025-01-31 10:12:53,598 DEBUG chr7: 3582 hotspots called 2025-01-31 10:12:53,689 DEBUG chr14: 1711 hotspots called 2025-01-31 10:12:54,205 DEBUG chr6: 2494 hotspots called 2025-01-31 10:12:54,375 DEBUG chr8: 2515 hotspots called 2025-01-31 10:12:54,744 DEBUG chr9: 2812 hotspots called 2025-01-31 10:12:55,368 DEBUG chr11: Calling hotspots 2025-01-31 10:12:55,744 DEBUG chr13: Calling hotspots 2025-01-31 10:12:55,889 DEBUG chr12: Calling hotspots 2025-01-31 10:12:56,177 DEBUG chr15: Calling hotspots 2025-01-31 10:12:56,239 DEBUG chr16: Calling hotspots 2025-01-31 10:12:56,268 DEBUG chr17: Calling hotspots 2025-01-31 10:12:58,451 DEBUG chr11: 4231 hotspots called 2025-01-31 10:12:58,609 DEBUG chr13: 2241 hotspots called 2025-01-31 10:12:58,664 DEBUG chr12: 1987 hotspots called 2025-01-31 10:12:58,730 DEBUG chr17: 2293 hotspots called 2025-01-31 10:12:58,734 DEBUG chr16: 1525 hotspots called 2025-01-31 10:12:58,795 DEBUG chr15: 2351 hotspots called 2025-01-31 10:12:59,312 DEBUG chr19: Calling hotspots 2025-01-31 10:12:59,508 DEBUG chr18: Calling hotspots 2025-01-31 10:13:00,734 DEBUG chr19: 1730 hotspots called 2025-01-31 10:13:01,537 DEBUG chr18: 1432 hotspots called 2025-01-31 10:13:01,717 DEBUG Results of call_hotspots emitted. 2025-01-31 10:13:01,750 INFO There are 51503 hotspots called at FDR=0.05 2025-01-31 10:13:04,117 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:13:04,117 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:13:12,535 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:13:12,740 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:13:12,787 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:13:13,351 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:13:14,453 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:13:15,137 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:13:17,123 DEBUG chr3: 2685 peaks called 2025-01-31 10:13:17,228 DEBUG chr4: 3673 peaks called 2025-01-31 10:13:17,372 DEBUG chr5: 3563 peaks called 2025-01-31 10:13:17,879 DEBUG chrX: 1995 peaks called 2025-01-31 10:13:20,821 DEBUG chr1: 3495 peaks called 2025-01-31 10:13:21,360 DEBUG chr2: 4432 peaks called 2025-01-31 10:13:23,930 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:13:24,181 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:13:24,569 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:13:25,181 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:13:26,801 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:13:27,250 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:13:27,372 DEBUG chr10: 2609 peaks called 2025-01-31 10:13:27,979 DEBUG chr7: 4034 peaks called 2025-01-31 10:13:28,824 DEBUG chr8: 2782 peaks called 2025-01-31 10:13:29,926 DEBUG chr6: 2702 peaks called 2025-01-31 10:13:30,976 DEBUG chr9: 3043 peaks called 2025-01-31 10:13:31,103 DEBUG chr14: 1840 peaks called 2025-01-31 10:13:33,028 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:13:33,819 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:13:34,830 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:13:35,293 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:13:35,529 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:13:35,656 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:13:36,885 DEBUG chr11: 4754 peaks called 2025-01-31 10:13:37,431 DEBUG chr13: 2489 peaks called 2025-01-31 10:13:38,134 DEBUG chr15: 2556 peaks called 2025-01-31 10:13:38,497 DEBUG chr16: 1678 peaks called 2025-01-31 10:13:38,629 DEBUG chr12: 2143 peaks called 2025-01-31 10:13:38,814 DEBUG chr17: 2589 peaks called 2025-01-31 10:13:39,884 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:13:40,158 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:13:41,617 DEBUG chr19: 1944 peaks called 2025-01-31 10:13:42,415 DEBUG chr18: 1525 peaks called 2025-01-31 10:13:42,691 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:13:42,722 INFO There are 56531 peaks called at FDR=0.05 2025-01-31 10:13:43,709 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:13:43,709 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:13:47,170 DEBUG chr3: Calling hotspots 2025-01-31 10:13:47,180 DEBUG chr4: Calling hotspots 2025-01-31 10:13:47,327 DEBUG chr5: Calling hotspots 2025-01-31 10:13:47,634 DEBUG chrX: Calling hotspots 2025-01-31 10:13:47,658 DEBUG chr2: Calling hotspots 2025-01-31 10:13:47,998 DEBUG chr1: Calling hotspots 2025-01-31 10:13:50,717 DEBUG chr3: 1977 hotspots called 2025-01-31 10:13:51,010 DEBUG chr4: 2805 hotspots called 2025-01-31 10:13:51,072 DEBUG chr5: 2706 hotspots called 2025-01-31 10:13:51,623 DEBUG chrX: 1323 hotspots called 2025-01-31 10:13:52,294 DEBUG chr2: 3347 hotspots called 2025-01-31 10:13:52,487 DEBUG chr1: 2569 hotspots called 2025-01-31 10:13:53,642 DEBUG chr6: Calling hotspots 2025-01-31 10:13:53,698 DEBUG chr10: Calling hotspots 2025-01-31 10:13:54,039 DEBUG chr8: Calling hotspots 2025-01-31 10:13:54,202 DEBUG chr7: Calling hotspots 2025-01-31 10:13:54,445 DEBUG chr14: Calling hotspots 2025-01-31 10:13:54,537 DEBUG chr9: Calling hotspots 2025-01-31 10:13:56,788 DEBUG chr10: 1961 hotspots called 2025-01-31 10:13:57,273 DEBUG chr8: 2120 hotspots called 2025-01-31 10:13:57,287 DEBUG chr14: 1354 hotspots called 2025-01-31 10:13:57,357 DEBUG chr9: 2318 hotspots called 2025-01-31 10:13:57,511 DEBUG chr6: 2015 hotspots called 2025-01-31 10:13:57,961 DEBUG chr7: 3024 hotspots called 2025-01-31 10:13:59,045 DEBUG chr11: Calling hotspots 2025-01-31 10:13:59,302 DEBUG chr15: Calling hotspots 2025-01-31 10:13:59,437 DEBUG chr13: Calling hotspots 2025-01-31 10:13:59,508 DEBUG chr16: Calling hotspots 2025-01-31 10:13:59,549 DEBUG chr12: Calling hotspots 2025-01-31 10:13:59,668 DEBUG chr17: Calling hotspots 2025-01-31 10:14:01,572 DEBUG chr15: 1949 hotspots called 2025-01-31 10:14:01,778 DEBUG chr11: 3594 hotspots called 2025-01-31 10:14:01,814 DEBUG chr16: 1243 hotspots called 2025-01-31 10:14:01,928 DEBUG chr17: 1945 hotspots called 2025-01-31 10:14:02,040 DEBUG chr13: 1836 hotspots called 2025-01-31 10:14:02,333 DEBUG chr12: 1568 hotspots called 2025-01-31 10:14:02,607 DEBUG chr19: Calling hotspots 2025-01-31 10:14:02,808 DEBUG chr18: Calling hotspots 2025-01-31 10:14:03,882 DEBUG chr19: 1475 hotspots called 2025-01-31 10:14:04,623 DEBUG chr18: 1119 hotspots called 2025-01-31 10:14:04,794 DEBUG Results of call_hotspots emitted. 2025-01-31 10:14:04,822 INFO There are 42248 hotspots called at FDR=0.01 2025-01-31 10:14:06,770 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:14:06,771 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:14:15,197 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:14:15,427 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:14:15,703 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:14:15,999 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:14:16,198 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:14:17,258 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:14:20,161 DEBUG chr4: 3051 peaks called 2025-01-31 10:14:20,348 DEBUG chr3: 2219 peaks called 2025-01-31 10:14:20,620 DEBUG chr5: 2958 peaks called 2025-01-31 10:14:21,335 DEBUG chr2: 3676 peaks called 2025-01-31 10:14:21,448 DEBUG chrX: 1387 peaks called 2025-01-31 10:14:23,772 DEBUG chr1: 2844 peaks called 2025-01-31 10:14:27,031 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:14:27,478 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:14:27,560 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:14:27,673 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:14:27,758 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:14:29,885 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:14:30,486 DEBUG chr10: 2174 peaks called 2025-01-31 10:14:31,002 DEBUG chr8: 2337 peaks called 2025-01-31 10:14:31,394 DEBUG chr7: 3401 peaks called 2025-01-31 10:14:31,404 DEBUG chr14: 1477 peaks called 2025-01-31 10:14:32,074 DEBUG chr6: 2194 peaks called 2025-01-31 10:14:33,449 DEBUG chr9: 2512 peaks called 2025-01-31 10:14:37,057 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:14:37,232 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:14:37,935 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:14:38,140 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:14:38,314 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:14:38,476 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:14:39,846 DEBUG chr16: 1375 peaks called 2025-01-31 10:14:40,131 DEBUG chr15: 2111 peaks called 2025-01-31 10:14:41,016 DEBUG chr17: 2180 peaks called 2025-01-31 10:14:42,306 DEBUG chr13: 2040 peaks called 2025-01-31 10:14:42,464 DEBUG chr12: 1714 peaks called 2025-01-31 10:14:42,583 DEBUG chr11: 3990 peaks called 2025-01-31 10:14:43,464 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:14:43,581 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:14:45,113 DEBUG chr19: 1650 peaks called 2025-01-31 10:14:46,137 DEBUG chr18: 1212 peaks called 2025-01-31 10:14:46,419 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:14:46,448 INFO There are 46502 peaks called at FDR=0.01 2025-01-31 10:14:47,308 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:14:47,309 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:14:50,737 DEBUG chr5: Calling hotspots 2025-01-31 10:14:50,888 DEBUG chr4: Calling hotspots 2025-01-31 10:14:50,934 DEBUG chr3: Calling hotspots 2025-01-31 10:14:51,227 DEBUG chrX: Calling hotspots 2025-01-31 10:14:51,474 DEBUG chr2: Calling hotspots 2025-01-31 10:14:51,686 DEBUG chr1: Calling hotspots 2025-01-31 10:14:54,624 DEBUG chr5: 2291 hotspots called 2025-01-31 10:14:55,161 DEBUG chr3: 1645 hotspots called 2025-01-31 10:14:55,238 DEBUG chr4: 2375 hotspots called 2025-01-31 10:14:55,307 DEBUG chrX: 993 hotspots called 2025-01-31 10:14:55,847 DEBUG chr2: 2787 hotspots called 2025-01-31 10:14:56,795 DEBUG chr1: 2129 hotspots called 2025-01-31 10:14:56,978 DEBUG chr6: Calling hotspots 2025-01-31 10:14:57,970 DEBUG chr10: Calling hotspots 2025-01-31 10:14:58,064 DEBUG chr8: Calling hotspots 2025-01-31 10:14:58,206 DEBUG chr7: Calling hotspots 2025-01-31 10:14:58,263 DEBUG chr14: Calling hotspots 2025-01-31 10:14:58,917 DEBUG chr9: Calling hotspots 2025-01-31 10:15:00,396 DEBUG chr6: 1629 hotspots called 2025-01-31 10:15:01,197 DEBUG chr8: 1770 hotspots called 2025-01-31 10:15:01,308 DEBUG chr14: 1083 hotspots called 2025-01-31 10:15:01,317 DEBUG chr10: 1635 hotspots called 2025-01-31 10:15:01,903 DEBUG chr7: 2550 hotspots called 2025-01-31 10:15:02,418 DEBUG chr9: 1905 hotspots called 2025-01-31 10:15:02,904 DEBUG chr11: Calling hotspots 2025-01-31 10:15:03,369 DEBUG chr15: Calling hotspots 2025-01-31 10:15:03,750 DEBUG chr13: Calling hotspots 2025-01-31 10:15:03,875 DEBUG chr12: Calling hotspots 2025-01-31 10:15:03,953 DEBUG chr16: Calling hotspots 2025-01-31 10:15:04,315 DEBUG chr17: Calling hotspots 2025-01-31 10:15:05,704 DEBUG chr11: 3040 hotspots called 2025-01-31 10:15:05,875 DEBUG chr15: 1634 hotspots called 2025-01-31 10:15:06,147 DEBUG chr16: 1045 hotspots called 2025-01-31 10:15:06,790 DEBUG chr17: 1635 hotspots called 2025-01-31 10:15:06,817 DEBUG chr13: 1530 hotspots called 2025-01-31 10:15:06,832 DEBUG chr19: Calling hotspots 2025-01-31 10:15:06,841 DEBUG chr12: 1248 hotspots called 2025-01-31 10:15:07,076 DEBUG chr18: Calling hotspots 2025-01-31 10:15:08,141 DEBUG chr19: 1257 hotspots called 2025-01-31 10:15:09,153 DEBUG chr18: 891 hotspots called 2025-01-31 10:15:09,308 DEBUG Results of call_hotspots emitted. 2025-01-31 10:15:09,333 INFO There are 35072 hotspots called at FDR=0.001 2025-01-31 10:15:10,992 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:15:10,993 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:15:19,780 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:15:19,822 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:15:20,322 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:15:20,403 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:15:20,535 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:15:21,011 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:15:24,848 DEBUG chr5: 2474 peaks called 2025-01-31 10:15:25,207 DEBUG chr3: 1822 peaks called 2025-01-31 10:15:25,230 DEBUG chr4: 2551 peaks called 2025-01-31 10:15:25,308 DEBUG chrX: 1058 peaks called 2025-01-31 10:15:26,673 DEBUG chr2: 3048 peaks called 2025-01-31 10:15:26,890 DEBUG chr1: 2327 peaks called 2025-01-31 10:15:32,054 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:15:32,054 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:15:32,071 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:15:32,492 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:15:32,733 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:15:32,929 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:15:36,214 DEBUG chr10: 1792 peaks called 2025-01-31 10:15:36,563 DEBUG chr8: 1947 peaks called 2025-01-31 10:15:36,763 DEBUG chr7: 2869 peaks called 2025-01-31 10:15:36,765 DEBUG chr6: 1785 peaks called 2025-01-31 10:15:36,870 DEBUG chr9: 2076 peaks called 2025-01-31 10:15:36,870 DEBUG chr14: 1183 peaks called 2025-01-31 10:15:41,795 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:15:41,853 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:15:41,948 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:15:42,026 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:15:43,191 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:15:43,437 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:15:44,793 DEBUG chr16: 1154 peaks called 2025-01-31 10:15:44,920 DEBUG chr17: 1816 peaks called 2025-01-31 10:15:45,330 DEBUG chr15: 1769 peaks called 2025-01-31 10:15:45,599 DEBUG chr11: 3344 peaks called 2025-01-31 10:15:47,197 DEBUG chr12: 1380 peaks called 2025-01-31 10:15:47,479 DEBUG chr13: 1680 peaks called 2025-01-31 10:15:47,818 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:15:48,308 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:15:49,717 DEBUG chr19: 1378 peaks called 2025-01-31 10:15:50,881 DEBUG chr18: 961 peaks called 2025-01-31 10:15:51,179 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:15:51,209 INFO There are 38414 peaks called at FDR=0.001 2025-01-31 10:15:54,757 INFO Saving density 2025-01-31 10:15:54,757 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:16:10,224 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:16:15,654 DEBUG Converting density to bigwig 2025-01-31 10:17:27,704 INFO Program finished