2025-01-31 09:31:55,494 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:55,497 INFO Extracting cutcounts from bam file 2025-01-31 09:34:26,972 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:34:27,020 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:34:27,020 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:34:27,022 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:34:27,023 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:34:27,023 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:34:27,035 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:34:29,119 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:34:29,146 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:34:29,234 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:34:29,271 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:34:29,469 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:34:29,614 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:34:30,530 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:34:30,626 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:34:30,631 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:34:30,752 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:34:30,851 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:34:31,117 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:34:31,807 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:34:31,878 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:34:31,896 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:34:32,763 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:34:32,763 INFO Total cutcounts = 25264834 2025-01-31 09:34:32,768 INFO Smoothing signal using MODWT 2025-01-31 09:34:32,769 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:34:32,799 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:32,801 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:32,803 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:32,804 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:32,813 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:32,816 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:44,703 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:49,004 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:49,831 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:54,416 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:14,045 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:35,633 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:33,926 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:37,288 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:44,669 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:46,539 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:50,622 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:28,573 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:10,846 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:19,173 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:20,458 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:50,552 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:41:50,553 INFO Estimating parameters of background model 2025-01-31 09:41:50,553 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:41:57,317 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:41:57,688 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:41:57,898 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:41:58,550 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:41:58,882 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:41:59,243 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:42:23,090 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:42:23,139 DEBUG chrX: Signal quantile: 0.995. signal threshold: 13. Best RMSEA: 0.027 2025-01-31 09:42:25,015 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:42:25,061 DEBUG chr3: Signal quantile: 0.992. signal threshold: 16. Best RMSEA: 0.017 2025-01-31 09:42:28,877 DEBUG chrX total SNP count: 244447 2025-01-31 09:42:28,877 DEBUG chrX length: 171031299 2025-01-31 09:42:28,877 DEBUG ----------------------------------------- 2025-01-31 09:42:28,877 INFO Processing SNPs in chrX 2025-01-31 09:42:29,287 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 32646), (32646, 32688), (32688, 173782), (173782, 244447)] 2025-01-31 09:42:29,397 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:29,859 DEBUG chr3 total SNP count: 264742 2025-01-31 09:42:29,859 DEBUG chr3 length: 160039680 2025-01-31 09:42:29,859 DEBUG ----------------------------------------- 2025-01-31 09:42:29,859 INFO Processing SNPs in chr3 2025-01-31 09:42:30,114 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 264742)] 2025-01-31 09:42:30,206 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:42:30,245 DEBUG chr5: Signal quantile: 0.988. signal threshold: 15. Best RMSEA: 0.017 2025-01-31 09:42:30,286 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:31,524 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:42:31,579 DEBUG chr4: Signal quantile: 0.989. signal threshold: 16. Best RMSEA: 0.016 2025-01-31 09:42:33,274 DEBUG Segmenting atomic regions: 2025-01-31 09:42:33,379 DEBUG Processing 1/107 atomic regions from SNP 0 to 603 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:34,919 DEBUG chr5 total SNP count: 254597 2025-01-31 09:42:34,919 DEBUG chr5 length: 151834684 2025-01-31 09:42:34,919 DEBUG ----------------------------------------- 2025-01-31 09:42:34,919 INFO Processing SNPs in chr5 2025-01-31 09:42:35,165 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 254597)] 2025-01-31 09:42:35,205 DEBUG Processing 2/107 atomic regions from SNP 303 to 906 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:35,329 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:35,479 DEBUG Processing 3/107 atomic regions from SNP 606 to 1209 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:35,748 DEBUG Processing 4/107 atomic regions from SNP 909 to 1512 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:36,041 DEBUG Processing 5/107 atomic regions from SNP 1212 to 1815 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:36,312 DEBUG Processing 6/107 atomic regions from SNP 1515 to 2118 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:36,595 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:42:36,623 DEBUG Processing 7/107 atomic regions from SNP 1818 to 2421 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:36,660 DEBUG chr1: Signal quantile: 0.991. signal threshold: 17. Best RMSEA: 0.017 2025-01-31 09:42:36,744 DEBUG chr4 total SNP count: 257952 2025-01-31 09:42:36,744 DEBUG chr4 length: 156508116 2025-01-31 09:42:36,744 DEBUG ----------------------------------------- 2025-01-31 09:42:36,744 INFO Processing SNPs in chr4 2025-01-31 09:42:36,932 DEBUG Processing 8/107 atomic regions from SNP 2121 to 2724 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:37,137 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 64952), (64952, 257952)] 2025-01-31 09:42:37,244 DEBUG Processing 9/107 atomic regions from SNP 2424 to 3027 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:37,260 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:37,533 DEBUG Processing 10/107 atomic regions from SNP 2727 to 3330 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:37,808 DEBUG Processing 11/107 atomic regions from SNP 3030 to 3633 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:38,082 DEBUG Processing 12/107 atomic regions from SNP 3333 to 3936 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:38,355 DEBUG Processing 13/107 atomic regions from SNP 3636 to 4239 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:38,645 DEBUG Processing 14/107 atomic regions from SNP 3939 to 4542 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:38,946 DEBUG Processing 15/107 atomic regions from SNP 4242 to 4845 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:39,245 DEBUG Processing 16/107 atomic regions from SNP 4545 to 5148 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:39,540 DEBUG Processing 17/107 atomic regions from SNP 4848 to 5451 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:39,783 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:42:39,819 DEBUG chr2: Signal quantile: 0.989. signal threshold: 16. Best RMSEA: 0.017 2025-01-31 09:42:39,879 DEBUG Processing 18/107 atomic regions from SNP 5151 to 5754 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:40,190 DEBUG Processing 19/107 atomic regions from SNP 5454 to 6057 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:40,501 DEBUG Processing 20/107 atomic regions from SNP 5757 to 6360 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:40,802 DEBUG Processing 21/107 atomic regions from SNP 6060 to 6663 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:41,094 DEBUG Processing 22/107 atomic regions from SNP 6363 to 6966 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:41,392 DEBUG Processing 23/107 atomic regions from SNP 6666 to 7269 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:41,700 DEBUG Processing 24/107 atomic regions from SNP 6969 to 7572 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:41,991 DEBUG Processing 25/107 atomic regions from SNP 7272 to 7875 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:42,269 DEBUG Processing 26/107 atomic regions from SNP 7575 to 8178 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:42,457 DEBUG chr1 total SNP count: 339108 2025-01-31 09:42:42,458 DEBUG chr1 length: 195471971 2025-01-31 09:42:42,458 DEBUG ----------------------------------------- 2025-01-31 09:42:42,458 INFO Processing SNPs in chr1 2025-01-31 09:42:42,571 DEBUG Processing 27/107 atomic regions from SNP 7878 to 8481 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:42,784 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 339108)] 2025-01-31 09:42:42,865 DEBUG Processing 28/107 atomic regions from SNP 8181 to 8784 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:43,004 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:43,167 DEBUG Processing 29/107 atomic regions from SNP 8484 to 9087 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:43,471 DEBUG Processing 30/107 atomic regions from SNP 8787 to 9390 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:43,779 DEBUG Processing 31/107 atomic regions from SNP 9090 to 9693 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:44,079 DEBUG Processing 32/107 atomic regions from SNP 9393 to 9995 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:44,378 DEBUG Processing 33/107 atomic regions from SNP 9695 to 10297 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:44,678 DEBUG Processing 34/107 atomic regions from SNP 9997 to 10599 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:44,983 DEBUG Processing 35/107 atomic regions from SNP 10299 to 10901 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:45,026 DEBUG Segmenting atomic regions: 2025-01-31 09:42:45,136 DEBUG Processing 1/215 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,290 DEBUG Processing 36/107 atomic regions from SNP 10601 to 11203 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:45,524 DEBUG chr2 total SNP count: 312082 2025-01-31 09:42:45,524 DEBUG chr2 length: 182113224 2025-01-31 09:42:45,524 DEBUG ----------------------------------------- 2025-01-31 09:42:45,524 INFO Processing SNPs in chr2 2025-01-31 09:42:45,603 DEBUG Processing 37/107 atomic regions from SNP 10903 to 11505 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:45,918 DEBUG Processing 2/215 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,927 DEBUG Processing 38/107 atomic regions from SNP 11205 to 11807 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:46,001 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 304245), (304245, 312082)] 2025-01-31 09:42:46,200 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:46,222 DEBUG Processing 3/215 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,260 DEBUG Processing 39/107 atomic regions from SNP 11507 to 12109 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:46,531 DEBUG Processing 4/215 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,583 DEBUG Processing 40/107 atomic regions from SNP 11809 to 12411 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:46,842 DEBUG Processing 5/215 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,894 DEBUG Processing 41/107 atomic regions from SNP 12111 to 12713 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:47,145 DEBUG Processing 6/215 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,198 DEBUG Processing 42/107 atomic regions from SNP 12413 to 13015 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:47,448 DEBUG Processing 7/215 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,504 DEBUG Processing 43/107 atomic regions from SNP 12715 to 13317 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:47,752 DEBUG Processing 8/215 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,818 DEBUG Processing 44/107 atomic regions from SNP 13017 to 13619 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:48,054 DEBUG Processing 9/215 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,143 DEBUG Processing 45/107 atomic regions from SNP 13319 to 13921 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:48,358 DEBUG Processing 10/215 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,459 DEBUG Processing 46/107 atomic regions from SNP 13621 to 14223 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:48,659 DEBUG Processing 11/215 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,760 DEBUG Processing 47/107 atomic regions from SNP 13923 to 14525 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:48,960 DEBUG Processing 12/215 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,055 DEBUG Processing 48/107 atomic regions from SNP 14225 to 14827 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:49,261 DEBUG Processing 13/215 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,349 DEBUG Processing 49/107 atomic regions from SNP 14527 to 15129 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:49,563 DEBUG Processing 14/215 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,643 DEBUG Processing 50/107 atomic regions from SNP 14829 to 15431 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:49,864 DEBUG Processing 15/215 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,937 DEBUG Processing 51/107 atomic regions from SNP 15131 to 15733 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:50,175 DEBUG Processing 16/215 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,231 DEBUG Processing 52/107 atomic regions from SNP 15433 to 16035 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:50,469 DEBUG Processing 17/215 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,526 DEBUG Processing 53/107 atomic regions from SNP 15735 to 16337 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:50,773 DEBUG Processing 18/215 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,821 DEBUG Processing 54/107 atomic regions from SNP 16037 to 16639 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:51,078 DEBUG Processing 19/215 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,115 DEBUG Processing 55/107 atomic regions from SNP 16339 to 16941 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:51,378 DEBUG Processing 20/215 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,412 DEBUG Processing 56/107 atomic regions from SNP 16641 to 17243 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:51,677 DEBUG Processing 21/215 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,711 DEBUG Processing 57/107 atomic regions from SNP 16943 to 17545 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:51,974 DEBUG Processing 22/215 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,006 DEBUG Processing 58/107 atomic regions from SNP 17245 to 17847 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:52,285 DEBUG Processing 23/215 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,305 DEBUG Processing 59/107 atomic regions from SNP 17547 to 18149 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:52,596 DEBUG Processing 24/215 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,606 DEBUG Processing 60/107 atomic regions from SNP 17849 to 18451 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:52,907 DEBUG Processing 25/215 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,908 DEBUG Processing 61/107 atomic regions from SNP 18151 to 18753 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:53,212 DEBUG Processing 62/107 atomic regions from SNP 18453 to 19055 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:53,220 DEBUG Processing 26/215 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,515 DEBUG Processing 63/107 atomic regions from SNP 18755 to 19357 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:53,530 DEBUG Processing 27/215 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,816 DEBUG Processing 64/107 atomic regions from SNP 19057 to 19659 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:53,840 DEBUG Processing 28/215 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,118 DEBUG Processing 65/107 atomic regions from SNP 19359 to 19961 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:54,150 DEBUG Processing 29/215 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,420 DEBUG Processing 66/107 atomic regions from SNP 19661 to 20263 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:54,459 DEBUG Processing 30/215 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,719 DEBUG Processing 67/107 atomic regions from SNP 19963 to 20565 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:54,787 DEBUG Processing 31/215 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,016 DEBUG Processing 68/107 atomic regions from SNP 20265 to 20867 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:55,093 DEBUG Processing 32/215 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,313 DEBUG Processing 69/107 atomic regions from SNP 20567 to 21169 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:55,396 DEBUG Processing 33/215 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,608 DEBUG Processing 70/107 atomic regions from SNP 20869 to 21471 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:55,700 DEBUG Processing 34/215 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,904 DEBUG Processing 71/107 atomic regions from SNP 21171 to 21773 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:56,006 DEBUG Processing 35/215 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,200 DEBUG Processing 72/107 atomic regions from SNP 21473 to 22075 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:56,310 DEBUG Processing 36/215 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,495 DEBUG Processing 73/107 atomic regions from SNP 21775 to 22377 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:56,616 DEBUG Processing 37/215 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,791 DEBUG Processing 74/107 atomic regions from SNP 22077 to 22679 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:56,923 DEBUG Processing 38/215 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,088 DEBUG Processing 75/107 atomic regions from SNP 22379 to 22981 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:57,228 DEBUG Processing 39/215 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,383 DEBUG Processing 76/107 atomic regions from SNP 22681 to 23283 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:57,532 DEBUG Processing 40/215 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,678 DEBUG Processing 77/107 atomic regions from SNP 22983 to 23585 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:57,835 DEBUG Processing 41/215 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,975 DEBUG Processing 78/107 atomic regions from SNP 23285 to 23887 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:58,138 DEBUG Processing 42/215 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,269 DEBUG Processing 79/107 atomic regions from SNP 23587 to 24189 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:58,441 DEBUG Processing 43/215 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,566 DEBUG Processing 80/107 atomic regions from SNP 23889 to 24491 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:58,763 DEBUG Processing 44/215 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,859 DEBUG Processing 81/107 atomic regions from SNP 24191 to 24793 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:59,097 DEBUG Processing 45/215 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,152 DEBUG Processing 82/107 atomic regions from SNP 24493 to 25095 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:59,430 DEBUG Processing 46/215 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,453 DEBUG Processing 83/107 atomic regions from SNP 24795 to 25397 for chrX (subchromosome 1 of 4). 2025-01-31 09:42:59,740 DEBUG Processing 47/215 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,754 DEBUG Processing 84/107 atomic regions from SNP 25097 to 25699 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:00,052 DEBUG Processing 48/215 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,071 DEBUG Processing 85/107 atomic regions from SNP 25399 to 26001 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:00,363 DEBUG Processing 49/215 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,390 DEBUG Processing 86/107 atomic regions from SNP 25701 to 26303 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:00,672 DEBUG Processing 50/215 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,716 DEBUG Processing 87/107 atomic regions from SNP 26003 to 26605 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:00,981 DEBUG Processing 51/215 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,024 DEBUG Processing 88/107 atomic regions from SNP 26305 to 26907 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:01,290 DEBUG Processing 52/215 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,321 DEBUG Processing 89/107 atomic regions from SNP 26607 to 27209 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:01,600 DEBUG Processing 53/215 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,620 DEBUG Processing 90/107 atomic regions from SNP 26909 to 27511 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:01,910 DEBUG Processing 54/215 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,921 DEBUG Processing 91/107 atomic regions from SNP 27211 to 27813 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:01,947 DEBUG Segmenting atomic regions: 2025-01-31 09:43:02,059 DEBUG Processing 1/881 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,222 DEBUG Processing 55/215 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,227 DEBUG Processing 92/107 atomic regions from SNP 27513 to 28115 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:02,533 DEBUG Processing 93/107 atomic regions from SNP 27815 to 28417 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:02,538 DEBUG Processing 56/215 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,839 DEBUG Processing 94/107 atomic regions from SNP 28117 to 28719 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:02,852 DEBUG Processing 57/215 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,877 DEBUG Processing 2/881 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,146 DEBUG Processing 95/107 atomic regions from SNP 28419 to 29021 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:03,167 DEBUG Processing 58/215 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,180 DEBUG Processing 3/881 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,452 DEBUG Processing 96/107 atomic regions from SNP 28721 to 29323 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:03,482 DEBUG Processing 59/215 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,485 DEBUG Processing 4/881 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,759 DEBUG Processing 97/107 atomic regions from SNP 29023 to 29625 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:03,790 DEBUG Processing 5/881 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,795 DEBUG Processing 60/215 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,063 DEBUG Processing 98/107 atomic regions from SNP 29325 to 29927 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:04,092 DEBUG Processing 6/881 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,128 DEBUG Processing 61/215 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,368 DEBUG Processing 99/107 atomic regions from SNP 29627 to 30229 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:04,394 DEBUG Processing 7/881 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,444 DEBUG Processing 62/215 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,670 DEBUG Processing 100/107 atomic regions from SNP 29929 to 30531 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:04,697 DEBUG Processing 8/881 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,753 DEBUG Processing 63/215 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,974 DEBUG Processing 101/107 atomic regions from SNP 30231 to 30833 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:04,997 DEBUG Processing 9/881 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,062 DEBUG Processing 64/215 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,276 DEBUG Processing 102/107 atomic regions from SNP 30533 to 31135 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:05,297 DEBUG Processing 10/881 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,371 DEBUG Processing 65/215 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,580 DEBUG Processing 103/107 atomic regions from SNP 30835 to 31437 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:05,597 DEBUG Processing 11/881 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,680 DEBUG Processing 66/215 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,767 DEBUG Segmenting atomic regions: 2025-01-31 09:43:05,874 DEBUG Processing 1/847 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,882 DEBUG Processing 104/107 atomic regions from SNP 31137 to 31739 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:05,899 DEBUG Processing 12/881 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,989 DEBUG Processing 67/215 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,189 DEBUG Processing 105/107 atomic regions from SNP 31439 to 32041 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:06,203 DEBUG Processing 13/881 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,302 DEBUG Processing 68/215 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,494 DEBUG Processing 106/107 atomic regions from SNP 31741 to 32343 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:06,507 DEBUG Processing 14/881 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,600 DEBUG Processing 2/847 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,617 DEBUG Processing 69/215 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,801 DEBUG Processing 107/107 atomic regions from SNP 32043 to 32645 for chrX (subchromosome 1 of 4). 2025-01-31 09:43:06,810 DEBUG Processing 15/881 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,898 DEBUG Processing 3/847 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,941 DEBUG Processing 70/215 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,005 DEBUG Unique SNPs positions in subchromosome 1: 32646 2025-01-31 09:43:07,063 DEBUG Subchromosome time: 37.6660456500249, subchromosome SNPs: 32646 2025-01-31 09:43:07,096 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:07,114 DEBUG Processing 16/881 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,198 DEBUG Processing 4/847 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,252 DEBUG Processing 71/215 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,406 DEBUG Processing 17/881 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,492 DEBUG Processing 5/847 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,564 DEBUG Processing 72/215 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,699 DEBUG Processing 18/881 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,786 DEBUG Processing 6/847 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,872 DEBUG Processing 73/215 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,991 DEBUG Processing 19/881 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,080 DEBUG Processing 7/847 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,184 DEBUG Processing 74/215 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,282 DEBUG Processing 20/881 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,372 DEBUG Processing 8/847 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,497 DEBUG Processing 75/215 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,576 DEBUG Processing 21/881 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,663 DEBUG Processing 9/847 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,811 DEBUG Processing 76/215 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,871 DEBUG Processing 22/881 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,956 DEBUG Processing 10/847 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,125 DEBUG Processing 77/215 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,166 DEBUG Processing 23/881 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,249 DEBUG Processing 11/847 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,442 DEBUG Processing 78/215 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,464 DEBUG Processing 24/881 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,543 DEBUG Processing 12/847 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,757 DEBUG Processing 79/215 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,762 DEBUG Processing 25/881 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,837 DEBUG Processing 13/847 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,062 DEBUG Processing 26/881 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,075 DEBUG Processing 80/215 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,134 DEBUG Processing 14/847 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,361 DEBUG Processing 27/881 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,393 DEBUG Processing 81/215 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,430 DEBUG Processing 15/847 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,658 DEBUG Processing 28/881 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,708 DEBUG Processing 82/215 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,727 DEBUG Processing 16/847 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,954 DEBUG Processing 29/881 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,025 DEBUG Processing 83/215 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,025 DEBUG Processing 17/847 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,249 DEBUG Processing 30/881 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,326 DEBUG Processing 18/847 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,343 DEBUG Processing 84/215 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,542 DEBUG Processing 31/881 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,623 DEBUG Processing 19/847 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,658 DEBUG Processing 85/215 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,847 DEBUG Processing 32/881 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,918 DEBUG Processing 20/847 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,972 DEBUG Processing 86/215 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,160 DEBUG Processing 33/881 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,212 DEBUG Processing 21/847 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,283 DEBUG Processing 87/215 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,455 DEBUG Processing 34/881 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,507 DEBUG Processing 22/847 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,593 DEBUG Processing 88/215 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,749 DEBUG Processing 35/881 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,801 DEBUG Processing 23/847 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,903 DEBUG Processing 89/215 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,044 DEBUG Processing 36/881 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,096 DEBUG Processing 24/847 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,215 DEBUG Processing 90/215 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,339 DEBUG Processing 37/881 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,390 DEBUG Processing 25/847 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,524 DEBUG Processing 91/215 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,635 DEBUG Processing 38/881 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,684 DEBUG Processing 26/847 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,834 DEBUG Processing 92/215 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,934 DEBUG Processing 39/881 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,978 DEBUG Processing 27/847 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,145 DEBUG Processing 93/215 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,233 DEBUG Processing 40/881 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,270 DEBUG Processing 28/847 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,460 DEBUG Processing 94/215 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,544 DEBUG Processing 41/881 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,566 DEBUG Processing 29/847 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,769 DEBUG Processing 95/215 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,841 DEBUG Processing 42/881 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,862 DEBUG Processing 30/847 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,080 DEBUG Processing 96/215 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,140 DEBUG Processing 43/881 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,159 DEBUG Processing 31/847 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,391 DEBUG Processing 97/215 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,438 DEBUG Processing 44/881 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,457 DEBUG Processing 32/847 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,703 DEBUG Processing 98/215 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,737 DEBUG Processing 45/881 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,754 DEBUG Processing 33/847 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,017 DEBUG Processing 99/215 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,037 DEBUG Processing 46/881 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,052 DEBUG Processing 34/847 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,341 DEBUG Processing 47/881 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,342 DEBUG Processing 100/215 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,354 DEBUG Processing 35/847 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,645 DEBUG Processing 48/881 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,657 DEBUG Processing 36/847 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,662 DEBUG Processing 101/215 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,946 DEBUG Processing 49/881 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,959 DEBUG Processing 37/847 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,981 DEBUG Processing 102/215 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,246 DEBUG Processing 50/881 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,261 DEBUG Processing 38/847 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,300 DEBUG Processing 103/215 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,545 DEBUG Processing 51/881 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,560 DEBUG Processing 39/847 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,626 DEBUG Processing 104/215 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,842 DEBUG Processing 52/881 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,858 DEBUG Processing 40/847 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,943 DEBUG Processing 105/215 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,138 DEBUG Processing 53/881 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,154 DEBUG Processing 41/847 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,255 DEBUG Processing 106/215 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,433 DEBUG Processing 54/881 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,451 DEBUG Processing 42/847 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,568 DEBUG Processing 107/215 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,729 DEBUG Processing 55/881 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,747 DEBUG Processing 43/847 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,889 DEBUG Processing 108/215 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,029 DEBUG Processing 56/881 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,046 DEBUG Processing 44/847 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,204 DEBUG Processing 109/215 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,328 DEBUG Processing 57/881 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,345 DEBUG Processing 45/847 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,522 DEBUG Processing 110/215 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,626 DEBUG Processing 58/881 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,643 DEBUG Processing 46/847 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,834 DEBUG Processing 111/215 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,922 DEBUG Processing 59/881 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,939 DEBUG Processing 47/847 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,145 DEBUG Processing 112/215 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,219 DEBUG Processing 60/881 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,236 DEBUG Processing 48/847 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,460 DEBUG Processing 113/215 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,517 DEBUG Processing 61/881 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,533 DEBUG Processing 49/847 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,778 DEBUG Processing 114/215 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,815 DEBUG Processing 62/881 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,830 DEBUG Processing 50/847 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,095 DEBUG Processing 115/215 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,115 DEBUG Processing 63/881 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,128 DEBUG Processing 51/847 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,416 DEBUG Processing 116/215 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,427 DEBUG Processing 64/881 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,430 DEBUG Processing 52/847 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,734 DEBUG Processing 53/847 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,739 DEBUG Processing 117/215 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,771 DEBUG Processing 65/881 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,038 DEBUG Processing 54/847 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,059 DEBUG Processing 118/215 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,069 DEBUG Processing 66/881 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,339 DEBUG Processing 55/847 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,369 DEBUG Processing 67/881 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,380 DEBUG Processing 119/215 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,557 DEBUG Segmenting atomic regions: 2025-01-31 09:43:22,638 DEBUG Processing 56/847 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,671 DEBUG Processing 68/881 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,689 DEBUG Processing 1/1013 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,696 DEBUG Processing 120/215 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,939 DEBUG Processing 57/847 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,972 DEBUG Processing 69/881 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,014 DEBUG Processing 121/215 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,240 DEBUG Processing 58/847 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,272 DEBUG Processing 70/881 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,328 DEBUG Processing 122/215 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,426 DEBUG Processing 2/1013 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,527 DEBUG Segmenting atomic regions: 2025-01-31 09:43:23,539 DEBUG Processing 59/847 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,570 DEBUG Processing 71/881 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,647 DEBUG Processing 123/215 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,671 DEBUG Processing 1/1129 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,752 DEBUG Processing 3/1013 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,836 DEBUG Processing 60/847 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,866 DEBUG Processing 72/881 atomic regions from SNP 21371 to 21972 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,968 DEBUG Processing 124/215 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,000 DEBUG Segmenting atomic regions: 2025-01-31 09:43:24,072 DEBUG Processing 4/1013 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,103 DEBUG Processing 1/469 atomic regions from SNP 0 to 601 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:24,134 DEBUG Processing 61/847 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,164 DEBUG Processing 73/881 atomic regions from SNP 21672 to 22273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,289 DEBUG Processing 125/215 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,400 DEBUG Processing 5/1013 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,408 DEBUG Processing 2/469 atomic regions from SNP 301 to 902 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:24,418 DEBUG Processing 2/1129 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,441 DEBUG Processing 62/847 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,467 DEBUG Processing 74/881 atomic regions from SNP 21973 to 22574 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,606 DEBUG Processing 126/215 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,721 DEBUG Processing 3/469 atomic regions from SNP 602 to 1203 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:24,731 DEBUG Processing 6/1013 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,749 DEBUG Processing 63/847 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,762 DEBUG Processing 3/1129 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,771 DEBUG Processing 75/881 atomic regions from SNP 22274 to 22875 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,921 DEBUG Processing 127/215 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,033 DEBUG Processing 4/469 atomic regions from SNP 903 to 1504 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:25,060 DEBUG Processing 64/847 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,065 DEBUG Processing 7/1013 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,079 DEBUG Processing 76/881 atomic regions from SNP 22575 to 23176 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,104 DEBUG Processing 4/1129 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,237 DEBUG Processing 128/215 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,342 DEBUG Processing 5/469 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:25,369 DEBUG Processing 65/847 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,387 DEBUG Processing 77/881 atomic regions from SNP 22876 to 23477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,398 DEBUG Processing 8/1013 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,443 DEBUG Processing 5/1129 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,552 DEBUG Processing 129/215 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,648 DEBUG Processing 6/469 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:25,676 DEBUG Processing 66/847 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,695 DEBUG Processing 78/881 atomic regions from SNP 23177 to 23778 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,727 DEBUG Processing 9/1013 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,780 DEBUG Processing 6/1129 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,867 DEBUG Processing 130/215 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,954 DEBUG Processing 7/469 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:25,980 DEBUG Processing 67/847 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,000 DEBUG Processing 79/881 atomic regions from SNP 23478 to 24079 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,055 DEBUG Processing 10/1013 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,114 DEBUG Processing 7/1129 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,188 DEBUG Processing 131/215 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,260 DEBUG Processing 8/469 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:26,285 DEBUG Processing 68/847 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,304 DEBUG Processing 80/881 atomic regions from SNP 23779 to 24380 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,380 DEBUG Processing 11/1013 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,449 DEBUG Processing 8/1129 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,508 DEBUG Processing 132/215 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,589 DEBUG Processing 9/469 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:26,592 DEBUG Processing 69/847 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,609 DEBUG Processing 81/881 atomic regions from SNP 24080 to 24681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,705 DEBUG Processing 12/1013 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,782 DEBUG Processing 9/1129 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,838 DEBUG Processing 133/215 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,898 DEBUG Processing 70/847 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,913 DEBUG Processing 82/881 atomic regions from SNP 24381 to 24982 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,925 DEBUG Processing 10/469 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:27,032 DEBUG Processing 13/1013 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,117 DEBUG Processing 10/1129 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,160 DEBUG Processing 134/215 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,202 DEBUG Processing 71/847 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,219 DEBUG Processing 83/881 atomic regions from SNP 24682 to 25283 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,254 DEBUG Processing 11/469 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:27,357 DEBUG Processing 14/1013 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,452 DEBUG Processing 11/1129 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,482 DEBUG Processing 135/215 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,507 DEBUG Processing 72/847 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,522 DEBUG Processing 84/881 atomic regions from SNP 24983 to 25584 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,575 DEBUG Processing 12/469 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:27,679 DEBUG Processing 15/1013 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,791 DEBUG Processing 12/1129 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,803 DEBUG Processing 136/215 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,811 DEBUG Processing 73/847 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,827 DEBUG Processing 85/881 atomic regions from SNP 25284 to 25885 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,883 DEBUG Processing 13/469 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:27,999 DEBUG Processing 16/1013 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,121 DEBUG Processing 74/847 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,128 DEBUG Processing 137/215 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,130 DEBUG Processing 13/1129 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,150 DEBUG Processing 86/881 atomic regions from SNP 25585 to 26186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,191 DEBUG Processing 14/469 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:28,318 DEBUG Processing 17/1013 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,429 DEBUG Processing 75/847 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,453 DEBUG Processing 138/215 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,472 DEBUG Processing 14/1129 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,476 DEBUG Processing 87/881 atomic regions from SNP 25886 to 26487 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,499 DEBUG Processing 15/469 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:28,639 DEBUG Processing 18/1013 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,739 DEBUG Processing 76/847 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,779 DEBUG Processing 139/215 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,784 DEBUG Processing 88/881 atomic regions from SNP 26187 to 26788 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,809 DEBUG Processing 16/469 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:28,813 DEBUG Processing 15/1129 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,967 DEBUG Processing 19/1013 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,045 DEBUG Processing 77/847 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,112 DEBUG Processing 140/215 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,117 DEBUG Processing 89/881 atomic regions from SNP 26488 to 27089 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,134 DEBUG Processing 17/469 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:29,155 DEBUG Processing 16/1129 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,304 DEBUG Processing 20/1013 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,348 DEBUG Processing 78/847 atomic regions from SNP 23177 to 23778 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,435 DEBUG Processing 90/881 atomic regions from SNP 26789 to 27390 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,440 DEBUG Processing 141/215 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,462 DEBUG Processing 18/469 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:29,494 DEBUG Processing 17/1129 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,651 DEBUG Processing 79/847 atomic regions from SNP 23478 to 24079 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,652 DEBUG Processing 21/1013 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,743 DEBUG Processing 91/881 atomic regions from SNP 27090 to 27691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,765 DEBUG Processing 142/215 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,774 DEBUG Processing 19/469 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:29,832 DEBUG Processing 18/1129 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,954 DEBUG Processing 80/847 atomic regions from SNP 23779 to 24380 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,989 DEBUG Processing 22/1013 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,046 DEBUG Processing 92/881 atomic regions from SNP 27391 to 27992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,085 DEBUG Processing 20/469 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:30,091 DEBUG Processing 143/215 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,166 DEBUG Processing 19/1129 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,255 DEBUG Processing 81/847 atomic regions from SNP 24080 to 24681 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,308 DEBUG Processing 23/1013 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,348 DEBUG Processing 93/881 atomic regions from SNP 27692 to 28293 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,395 DEBUG Processing 21/469 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:30,414 DEBUG Processing 144/215 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,501 DEBUG Processing 20/1129 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,561 DEBUG Processing 82/847 atomic regions from SNP 24381 to 24982 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,631 DEBUG Processing 24/1013 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,647 DEBUG Processing 94/881 atomic regions from SNP 27993 to 28594 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,702 DEBUG Processing 22/469 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:30,735 DEBUG Processing 145/215 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,830 DEBUG Processing 21/1129 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,865 DEBUG Processing 83/847 atomic regions from SNP 24682 to 25283 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,947 DEBUG Processing 95/881 atomic regions from SNP 28294 to 28895 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,952 DEBUG Processing 25/1013 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,009 DEBUG Processing 23/469 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:31,056 DEBUG Processing 146/215 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,165 DEBUG Processing 22/1129 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,168 DEBUG Processing 84/847 atomic regions from SNP 24983 to 25584 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,249 DEBUG Processing 96/881 atomic regions from SNP 28595 to 29196 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,276 DEBUG Processing 26/1013 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,315 DEBUG Processing 24/469 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:31,374 DEBUG Processing 147/215 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,472 DEBUG Processing 85/847 atomic regions from SNP 25284 to 25885 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,501 DEBUG Processing 23/1129 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,551 DEBUG Processing 97/881 atomic regions from SNP 28896 to 29497 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,598 DEBUG Processing 27/1013 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,622 DEBUG Processing 25/469 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:31,689 DEBUG Processing 148/215 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,775 DEBUG Processing 86/847 atomic regions from SNP 25585 to 26186 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,837 DEBUG Processing 24/1129 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,855 DEBUG Processing 98/881 atomic regions from SNP 29197 to 29798 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,919 DEBUG Processing 28/1013 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,929 DEBUG Processing 26/469 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:32,004 DEBUG Processing 149/215 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,078 DEBUG Processing 87/847 atomic regions from SNP 25886 to 26487 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,160 DEBUG Processing 99/881 atomic regions from SNP 29498 to 30099 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,176 DEBUG Processing 25/1129 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,238 DEBUG Processing 27/469 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:32,245 DEBUG Processing 29/1013 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,322 DEBUG Processing 150/215 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,380 DEBUG Processing 88/847 atomic regions from SNP 26187 to 26788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,465 DEBUG Processing 100/881 atomic regions from SNP 29799 to 30400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,517 DEBUG Processing 26/1129 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,545 DEBUG Processing 28/469 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:32,569 DEBUG Processing 30/1013 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,639 DEBUG Processing 151/215 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,680 DEBUG Processing 89/847 atomic regions from SNP 26488 to 27089 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,768 DEBUG Processing 101/881 atomic regions from SNP 30100 to 30701 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,852 DEBUG Processing 29/469 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:32,855 DEBUG Processing 27/1129 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,892 DEBUG Processing 31/1013 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,957 DEBUG Processing 152/215 atomic regions from SNP 45451 to 46051 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,981 DEBUG Processing 90/847 atomic regions from SNP 26789 to 27390 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,068 DEBUG Processing 102/881 atomic regions from SNP 30401 to 31002 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,159 DEBUG Processing 30/469 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:33,191 DEBUG Processing 28/1129 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,216 DEBUG Processing 32/1013 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,280 DEBUG Processing 153/215 atomic regions from SNP 45751 to 46351 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,294 DEBUG Processing 91/847 atomic regions from SNP 27090 to 27691 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,367 DEBUG Processing 103/881 atomic regions from SNP 30702 to 31303 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,467 DEBUG Processing 31/469 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:33,527 DEBUG Processing 29/1129 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,539 DEBUG Processing 33/1013 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,603 DEBUG Processing 154/215 atomic regions from SNP 46051 to 46651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,604 DEBUG Processing 92/847 atomic regions from SNP 27391 to 27992 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,666 DEBUG Processing 104/881 atomic regions from SNP 31003 to 31604 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,771 DEBUG Processing 32/469 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:33,863 DEBUG Processing 30/1129 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,863 DEBUG Processing 34/1013 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,911 DEBUG Processing 93/847 atomic regions from SNP 27692 to 28293 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,926 DEBUG Processing 155/215 atomic regions from SNP 46351 to 46951 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,966 DEBUG Processing 105/881 atomic regions from SNP 31304 to 31905 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,073 DEBUG Processing 33/469 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:34,189 DEBUG Processing 35/1013 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,203 DEBUG Processing 31/1129 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,218 DEBUG Processing 94/847 atomic regions from SNP 27993 to 28594 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,252 DEBUG Processing 156/215 atomic regions from SNP 46651 to 47251 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,268 DEBUG Processing 106/881 atomic regions from SNP 31605 to 32206 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,373 DEBUG Processing 34/469 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:34,517 DEBUG Processing 36/1013 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,526 DEBUG Processing 95/847 atomic regions from SNP 28294 to 28895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,542 DEBUG Processing 32/1129 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,572 DEBUG Processing 107/881 atomic regions from SNP 31906 to 32507 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,576 DEBUG Processing 157/215 atomic regions from SNP 46951 to 47551 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,672 DEBUG Processing 35/469 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:34,839 DEBUG Processing 96/847 atomic regions from SNP 28595 to 29196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,846 DEBUG Processing 37/1013 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,878 DEBUG Processing 108/881 atomic regions from SNP 32207 to 32808 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,886 DEBUG Processing 33/1129 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,907 DEBUG Processing 158/215 atomic regions from SNP 47251 to 47851 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,983 DEBUG Processing 36/469 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:35,148 DEBUG Processing 97/847 atomic regions from SNP 28896 to 29497 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,175 DEBUG Processing 38/1013 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,184 DEBUG Processing 109/881 atomic regions from SNP 32508 to 33109 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,226 DEBUG Processing 34/1129 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,231 DEBUG Processing 159/215 atomic regions from SNP 47551 to 48151 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,294 DEBUG Processing 37/469 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:35,454 DEBUG Processing 98/847 atomic regions from SNP 29197 to 29798 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,490 DEBUG Processing 110/881 atomic regions from SNP 32809 to 33410 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,503 DEBUG Processing 39/1013 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,553 DEBUG Processing 160/215 atomic regions from SNP 47851 to 48451 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,563 DEBUG Processing 35/1129 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,597 DEBUG Processing 38/469 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:35,757 DEBUG Processing 99/847 atomic regions from SNP 29498 to 30099 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,793 DEBUG Processing 111/881 atomic regions from SNP 33110 to 33711 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,826 DEBUG Processing 40/1013 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,877 DEBUG Processing 161/215 atomic regions from SNP 48151 to 48751 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,902 DEBUG Processing 36/1129 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,904 DEBUG Processing 39/469 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:36,060 DEBUG Processing 100/847 atomic regions from SNP 29799 to 30400 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,095 DEBUG Processing 112/881 atomic regions from SNP 33411 to 34012 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,149 DEBUG Processing 41/1013 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,200 DEBUG Processing 162/215 atomic regions from SNP 48451 to 49051 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,215 DEBUG Processing 40/469 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:36,254 DEBUG Processing 37/1129 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,360 DEBUG Processing 101/847 atomic regions from SNP 30100 to 30701 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,397 DEBUG Processing 113/881 atomic regions from SNP 33712 to 34313 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,472 DEBUG Processing 42/1013 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,523 DEBUG Processing 41/469 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:36,530 DEBUG Processing 163/215 atomic regions from SNP 48751 to 49351 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,614 DEBUG Processing 38/1129 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,660 DEBUG Processing 102/847 atomic regions from SNP 30401 to 31002 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,699 DEBUG Processing 114/881 atomic regions from SNP 34013 to 34614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,792 DEBUG Processing 43/1013 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,831 DEBUG Processing 42/469 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:36,853 DEBUG Processing 164/215 atomic regions from SNP 49051 to 49651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,957 DEBUG Processing 39/1129 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,961 DEBUG Processing 103/847 atomic regions from SNP 30702 to 31303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,003 DEBUG Processing 115/881 atomic regions from SNP 34314 to 34915 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,113 DEBUG Processing 44/1013 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,141 DEBUG Processing 43/469 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:37,177 DEBUG Processing 165/215 atomic regions from SNP 49351 to 49951 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,266 DEBUG Processing 104/847 atomic regions from SNP 31003 to 31604 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,297 DEBUG Processing 40/1129 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,306 DEBUG Processing 116/881 atomic regions from SNP 34615 to 35216 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,436 DEBUG Processing 45/1013 atomic regions from SNP 13244 to 13844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,452 DEBUG Processing 44/469 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:37,514 DEBUG Processing 166/215 atomic regions from SNP 49651 to 50251 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,585 DEBUG Processing 105/847 atomic regions from SNP 31304 to 31905 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,611 DEBUG Processing 117/881 atomic regions from SNP 34916 to 35517 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,634 DEBUG Processing 41/1129 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,758 DEBUG Processing 46/1013 atomic regions from SNP 13544 to 14144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,760 DEBUG Processing 45/469 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:37,852 DEBUG Processing 167/215 atomic regions from SNP 49951 to 50551 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,909 DEBUG Processing 106/847 atomic regions from SNP 31605 to 32206 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,918 DEBUG Processing 118/881 atomic regions from SNP 35217 to 35818 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,970 DEBUG Processing 42/1129 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,066 DEBUG Processing 46/469 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:38,082 DEBUG Processing 47/1013 atomic regions from SNP 13844 to 14444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,199 DEBUG Processing 168/215 atomic regions from SNP 50251 to 50851 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,227 DEBUG Processing 107/847 atomic regions from SNP 31906 to 32507 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,230 DEBUG Processing 119/881 atomic regions from SNP 35518 to 36119 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,308 DEBUG Processing 43/1129 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,374 DEBUG Processing 47/469 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:38,404 DEBUG Processing 48/1013 atomic regions from SNP 14144 to 14744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,536 DEBUG Processing 108/847 atomic regions from SNP 32207 to 32808 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,537 DEBUG Processing 120/881 atomic regions from SNP 35819 to 36420 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,546 DEBUG Processing 169/215 atomic regions from SNP 50551 to 51151 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,645 DEBUG Processing 44/1129 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,686 DEBUG Processing 48/469 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:38,725 DEBUG Processing 49/1013 atomic regions from SNP 14444 to 15044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,845 DEBUG Processing 109/847 atomic regions from SNP 32508 to 33109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,849 DEBUG Processing 121/881 atomic regions from SNP 36120 to 36721 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,881 DEBUG Processing 170/215 atomic regions from SNP 50851 to 51451 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,983 DEBUG Processing 45/1129 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,997 DEBUG Processing 49/469 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:39,049 DEBUG Processing 50/1013 atomic regions from SNP 14744 to 15344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,151 DEBUG Processing 110/847 atomic regions from SNP 32809 to 33410 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,156 DEBUG Processing 122/881 atomic regions from SNP 36421 to 37022 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,201 DEBUG Processing 171/215 atomic regions from SNP 51151 to 51751 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,307 DEBUG Processing 50/469 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:39,324 DEBUG Processing 46/1129 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,374 DEBUG Processing 51/1013 atomic regions from SNP 15044 to 15644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,461 DEBUG Processing 123/881 atomic regions from SNP 36722 to 37323 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,482 DEBUG Processing 111/847 atomic regions from SNP 33110 to 33711 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,521 DEBUG Processing 172/215 atomic regions from SNP 51451 to 52051 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,614 DEBUG Processing 51/469 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:39,660 DEBUG Processing 47/1129 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,699 DEBUG Processing 52/1013 atomic regions from SNP 15344 to 15944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,764 DEBUG Processing 124/881 atomic regions from SNP 37023 to 37624 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,813 DEBUG Processing 112/847 atomic regions from SNP 33411 to 34012 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,839 DEBUG Processing 173/215 atomic regions from SNP 51751 to 52351 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,920 DEBUG Processing 52/469 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:39,998 DEBUG Processing 48/1129 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,022 DEBUG Processing 53/1013 atomic regions from SNP 15644 to 16244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,068 DEBUG Processing 125/881 atomic regions from SNP 37324 to 37925 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,142 DEBUG Processing 113/847 atomic regions from SNP 33712 to 34313 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,159 DEBUG Processing 174/215 atomic regions from SNP 52051 to 52651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,224 DEBUG Processing 53/469 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:40,336 DEBUG Processing 49/1129 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,347 DEBUG Processing 54/1013 atomic regions from SNP 15944 to 16544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,370 DEBUG Processing 126/881 atomic regions from SNP 37625 to 38226 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,476 DEBUG Processing 114/847 atomic regions from SNP 34013 to 34614 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,490 DEBUG Processing 175/215 atomic regions from SNP 52351 to 52951 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,530 DEBUG Processing 54/469 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:40,672 DEBUG Processing 50/1129 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,672 DEBUG Processing 55/1013 atomic regions from SNP 16244 to 16844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,674 DEBUG Processing 127/881 atomic regions from SNP 37926 to 38527 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,813 DEBUG Processing 115/847 atomic regions from SNP 34314 to 34915 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,817 DEBUG Processing 176/215 atomic regions from SNP 52651 to 53251 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,838 DEBUG Processing 55/469 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:40,986 DEBUG Processing 128/881 atomic regions from SNP 38227 to 38828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,004 DEBUG Processing 56/1013 atomic regions from SNP 16544 to 17144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,016 DEBUG Processing 51/1129 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,129 DEBUG Processing 116/847 atomic regions from SNP 34615 to 35216 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,144 DEBUG Processing 177/215 atomic regions from SNP 52951 to 53551 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,148 DEBUG Processing 56/469 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:41,295 DEBUG Processing 129/881 atomic regions from SNP 38528 to 39129 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,331 DEBUG Processing 57/1013 atomic regions from SNP 16844 to 17444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,352 DEBUG Processing 52/1129 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,433 DEBUG Processing 117/847 atomic regions from SNP 34916 to 35517 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,459 DEBUG Processing 57/469 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:41,469 DEBUG Processing 178/215 atomic regions from SNP 53251 to 53851 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,596 DEBUG Processing 130/881 atomic regions from SNP 38829 to 39430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,654 DEBUG Processing 58/1013 atomic regions from SNP 17144 to 17744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,686 DEBUG Processing 53/1129 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,759 DEBUG Processing 118/847 atomic regions from SNP 35217 to 35818 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,768 DEBUG Processing 58/469 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:41,789 DEBUG Processing 179/215 atomic regions from SNP 53551 to 54151 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,896 DEBUG Processing 131/881 atomic regions from SNP 39130 to 39731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,978 DEBUG Processing 59/1013 atomic regions from SNP 17444 to 18044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,022 DEBUG Processing 54/1129 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,078 DEBUG Processing 59/469 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:42,080 DEBUG Processing 119/847 atomic regions from SNP 35518 to 36119 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,111 DEBUG Processing 180/215 atomic regions from SNP 53851 to 54451 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,198 DEBUG Processing 132/881 atomic regions from SNP 39431 to 40032 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,300 DEBUG Processing 60/1013 atomic regions from SNP 17744 to 18344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,356 DEBUG Processing 55/1129 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,386 DEBUG Processing 120/847 atomic regions from SNP 35819 to 36420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,388 DEBUG Processing 60/469 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:42,431 DEBUG Processing 181/215 atomic regions from SNP 54151 to 54751 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,498 DEBUG Processing 133/881 atomic regions from SNP 39732 to 40333 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,623 DEBUG Processing 61/1013 atomic regions from SNP 18044 to 18644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,690 DEBUG Processing 121/847 atomic regions from SNP 36120 to 36721 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,693 DEBUG Processing 56/1129 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,697 DEBUG Processing 61/469 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:42,750 DEBUG Processing 182/215 atomic regions from SNP 54451 to 55051 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,798 DEBUG Processing 134/881 atomic regions from SNP 40033 to 40634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,946 DEBUG Processing 62/1013 atomic regions from SNP 18344 to 18944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,998 DEBUG Processing 122/847 atomic regions from SNP 36421 to 37022 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,008 DEBUG Processing 62/469 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:43,033 DEBUG Processing 57/1129 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,072 DEBUG Processing 183/215 atomic regions from SNP 54751 to 55351 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,099 DEBUG Processing 135/881 atomic regions from SNP 40334 to 40935 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,268 DEBUG Processing 63/1013 atomic regions from SNP 18644 to 19244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,304 DEBUG Processing 123/847 atomic regions from SNP 36722 to 37323 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,318 DEBUG Processing 63/469 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:43,387 DEBUG Processing 58/1129 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,392 DEBUG Processing 184/215 atomic regions from SNP 55051 to 55651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,399 DEBUG Processing 136/881 atomic regions from SNP 40635 to 41236 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,588 DEBUG Processing 64/1013 atomic regions from SNP 18944 to 19544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,611 DEBUG Processing 124/847 atomic regions from SNP 37023 to 37624 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,627 DEBUG Processing 64/469 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:43,707 DEBUG Processing 137/881 atomic regions from SNP 40936 to 41537 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,713 DEBUG Processing 185/215 atomic regions from SNP 55351 to 55951 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,737 DEBUG Processing 59/1129 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,912 DEBUG Processing 65/1013 atomic regions from SNP 19244 to 19844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,915 DEBUG Processing 125/847 atomic regions from SNP 37324 to 37925 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,934 DEBUG Processing 65/469 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:44,014 DEBUG Processing 138/881 atomic regions from SNP 41237 to 41838 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,034 DEBUG Processing 186/215 atomic regions from SNP 55651 to 56251 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,082 DEBUG Processing 60/1129 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,220 DEBUG Processing 126/847 atomic regions from SNP 37625 to 38226 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,239 DEBUG Processing 66/1013 atomic regions from SNP 19544 to 20144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,242 DEBUG Processing 66/469 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:44,321 DEBUG Processing 139/881 atomic regions from SNP 41538 to 42139 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,353 DEBUG Processing 187/215 atomic regions from SNP 55951 to 56551 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,416 DEBUG Processing 61/1129 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,525 DEBUG Processing 127/847 atomic regions from SNP 37926 to 38527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,549 DEBUG Processing 67/469 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:44,563 DEBUG Processing 67/1013 atomic regions from SNP 19844 to 20444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,641 DEBUG Processing 140/881 atomic regions from SNP 41839 to 42440 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,674 DEBUG Processing 188/215 atomic regions from SNP 56251 to 56851 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,748 DEBUG Processing 62/1129 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,829 DEBUG Processing 128/847 atomic regions from SNP 38227 to 38828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,859 DEBUG Processing 68/469 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:44,887 DEBUG Processing 68/1013 atomic regions from SNP 20144 to 20744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,964 DEBUG Processing 141/881 atomic regions from SNP 42140 to 42741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,995 DEBUG Processing 189/215 atomic regions from SNP 56551 to 57151 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,081 DEBUG Processing 63/1129 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,131 DEBUG Processing 129/847 atomic regions from SNP 38528 to 39129 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,164 DEBUG Processing 69/469 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:45,210 DEBUG Processing 69/1013 atomic regions from SNP 20444 to 21044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,266 DEBUG Processing 142/881 atomic regions from SNP 42441 to 43041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,314 DEBUG Processing 190/215 atomic regions from SNP 56851 to 57451 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,418 DEBUG Processing 64/1129 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,433 DEBUG Processing 130/847 atomic regions from SNP 38829 to 39430 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,493 DEBUG Processing 70/469 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:45,532 DEBUG Processing 70/1013 atomic regions from SNP 20744 to 21344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,566 DEBUG Processing 143/881 atomic regions from SNP 42741 to 43341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,632 DEBUG Processing 191/215 atomic regions from SNP 57151 to 57751 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,733 DEBUG Processing 131/847 atomic regions from SNP 39130 to 39731 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,752 DEBUG Processing 65/1129 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,835 DEBUG Processing 71/469 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:45,855 DEBUG Processing 71/1013 atomic regions from SNP 21044 to 21644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,869 DEBUG Processing 144/881 atomic regions from SNP 43041 to 43641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,949 DEBUG Processing 192/215 atomic regions from SNP 57451 to 58051 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,033 DEBUG Processing 132/847 atomic regions from SNP 39431 to 40032 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,088 DEBUG Processing 66/1129 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,155 DEBUG Processing 72/469 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:46,172 DEBUG Processing 145/881 atomic regions from SNP 43341 to 43941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,180 DEBUG Processing 72/1013 atomic regions from SNP 21344 to 21944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,266 DEBUG Processing 193/215 atomic regions from SNP 57751 to 58351 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,337 DEBUG Processing 133/847 atomic regions from SNP 39732 to 40333 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,424 DEBUG Processing 67/1129 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,464 DEBUG Processing 73/469 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:46,477 DEBUG Processing 146/881 atomic regions from SNP 43641 to 44241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,504 DEBUG Processing 73/1013 atomic regions from SNP 21644 to 22244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,588 DEBUG Processing 194/215 atomic regions from SNP 58051 to 58651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,636 DEBUG Processing 134/847 atomic regions from SNP 40033 to 40634 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,762 DEBUG Processing 68/1129 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,775 DEBUG Processing 74/469 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:46,784 DEBUG Processing 147/881 atomic regions from SNP 43941 to 44541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,828 DEBUG Processing 74/1013 atomic regions from SNP 21944 to 22544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,909 DEBUG Processing 195/215 atomic regions from SNP 58351 to 58951 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,937 DEBUG Processing 135/847 atomic regions from SNP 40334 to 40935 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,087 DEBUG Processing 75/469 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:47,094 DEBUG Processing 148/881 atomic regions from SNP 44241 to 44841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,104 DEBUG Processing 69/1129 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,151 DEBUG Processing 75/1013 atomic regions from SNP 22244 to 22844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,232 DEBUG Processing 196/215 atomic regions from SNP 58651 to 59251 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,241 DEBUG Processing 136/847 atomic regions from SNP 40635 to 41236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,397 DEBUG Processing 76/469 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:47,402 DEBUG Processing 149/881 atomic regions from SNP 44541 to 45141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,442 DEBUG Processing 70/1129 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,475 DEBUG Processing 76/1013 atomic regions from SNP 22544 to 23144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,545 DEBUG Processing 137/847 atomic regions from SNP 40936 to 41537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,554 DEBUG Processing 197/215 atomic regions from SNP 58951 to 59551 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,706 DEBUG Processing 77/469 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:47,711 DEBUG Processing 150/881 atomic regions from SNP 44841 to 45441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,778 DEBUG Processing 71/1129 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,799 DEBUG Processing 77/1013 atomic regions from SNP 22844 to 23444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,848 DEBUG Processing 138/847 atomic regions from SNP 41237 to 41838 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,873 DEBUG Processing 198/215 atomic regions from SNP 59251 to 59851 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,014 DEBUG Processing 78/469 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:48,040 DEBUG Processing 151/881 atomic regions from SNP 45141 to 45741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,117 DEBUG Processing 72/1129 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,126 DEBUG Processing 78/1013 atomic regions from SNP 23144 to 23744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,149 DEBUG Processing 139/847 atomic regions from SNP 41538 to 42139 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,189 DEBUG Processing 199/215 atomic regions from SNP 59551 to 60151 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,317 DEBUG Processing 79/469 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:48,355 DEBUG Processing 152/881 atomic regions from SNP 45441 to 46041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,451 DEBUG Processing 79/1013 atomic regions from SNP 23444 to 24044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,453 DEBUG Processing 140/847 atomic regions from SNP 41839 to 42440 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,454 DEBUG Processing 73/1129 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,507 DEBUG Processing 200/215 atomic regions from SNP 59851 to 60451 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,620 DEBUG Processing 80/469 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:48,663 DEBUG Processing 153/881 atomic regions from SNP 45741 to 46341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,761 DEBUG Processing 141/847 atomic regions from SNP 42140 to 42741 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,781 DEBUG Processing 80/1013 atomic regions from SNP 23744 to 24344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,795 DEBUG Processing 74/1129 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,827 DEBUG Processing 201/215 atomic regions from SNP 60151 to 60751 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,922 DEBUG Processing 81/469 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:48,990 DEBUG Processing 154/881 atomic regions from SNP 46041 to 46641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,066 DEBUG Processing 142/847 atomic regions from SNP 42441 to 43042 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,108 DEBUG Processing 81/1013 atomic regions from SNP 24044 to 24644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,131 DEBUG Processing 75/1129 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,146 DEBUG Processing 202/215 atomic regions from SNP 60451 to 61051 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,226 DEBUG Processing 82/469 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:49,290 DEBUG Processing 155/881 atomic regions from SNP 46341 to 46941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,371 DEBUG Processing 143/847 atomic regions from SNP 42742 to 43343 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,434 DEBUG Processing 82/1013 atomic regions from SNP 24344 to 24944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,466 DEBUG Processing 203/215 atomic regions from SNP 60751 to 61351 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,467 DEBUG Processing 76/1129 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,556 DEBUG Processing 83/469 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:49,592 DEBUG Processing 156/881 atomic regions from SNP 46641 to 47241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,673 DEBUG Processing 144/847 atomic regions from SNP 43043 to 43644 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,759 DEBUG Processing 83/1013 atomic regions from SNP 24644 to 25244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,789 DEBUG Processing 204/215 atomic regions from SNP 61051 to 61651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,805 DEBUG Processing 77/1129 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,870 DEBUG Processing 84/469 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:49,891 DEBUG Processing 157/881 atomic regions from SNP 46941 to 47541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,972 DEBUG Processing 145/847 atomic regions from SNP 43344 to 43945 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,081 DEBUG Processing 84/1013 atomic regions from SNP 24944 to 25544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,110 DEBUG Processing 205/215 atomic regions from SNP 61351 to 61951 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,145 DEBUG Processing 78/1129 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,179 DEBUG Processing 85/469 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:50,195 DEBUG Processing 158/881 atomic regions from SNP 47241 to 47841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,278 DEBUG Processing 146/847 atomic regions from SNP 43645 to 44246 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,402 DEBUG Processing 85/1013 atomic regions from SNP 25244 to 25844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,433 DEBUG Processing 206/215 atomic regions from SNP 61651 to 62251 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,482 DEBUG Processing 79/1129 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,493 DEBUG Processing 86/469 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:50,501 DEBUG Processing 159/881 atomic regions from SNP 47541 to 48141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,597 DEBUG Processing 147/847 atomic regions from SNP 43946 to 44547 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,723 DEBUG Processing 86/1013 atomic regions from SNP 25544 to 26144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,761 DEBUG Processing 207/215 atomic regions from SNP 61951 to 62551 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,803 DEBUG Processing 87/469 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:50,808 DEBUG Processing 160/881 atomic regions from SNP 47841 to 48441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,821 DEBUG Processing 80/1129 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,912 DEBUG Processing 148/847 atomic regions from SNP 44247 to 44848 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,044 DEBUG Processing 87/1013 atomic regions from SNP 25844 to 26444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,090 DEBUG Processing 208/215 atomic regions from SNP 62251 to 62851 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,112 DEBUG Processing 88/469 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:51,115 DEBUG Processing 161/881 atomic regions from SNP 48141 to 48741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,159 DEBUG Processing 81/1129 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,246 DEBUG Processing 149/847 atomic regions from SNP 44548 to 45149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,388 DEBUG Processing 88/1013 atomic regions from SNP 26144 to 26744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,414 DEBUG Processing 209/215 atomic regions from SNP 62551 to 63151 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,425 DEBUG Processing 89/469 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:51,434 DEBUG Processing 162/881 atomic regions from SNP 48441 to 49041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,495 DEBUG Processing 82/1129 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,575 DEBUG Processing 150/847 atomic regions from SNP 44849 to 45450 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,732 DEBUG Processing 89/1013 atomic regions from SNP 26444 to 27044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,739 DEBUG Processing 90/469 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:51,747 DEBUG Processing 163/881 atomic regions from SNP 48741 to 49341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,751 DEBUG Processing 210/215 atomic regions from SNP 62851 to 63451 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,832 DEBUG Processing 83/1129 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,908 DEBUG Processing 151/847 atomic regions from SNP 45150 to 45751 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,051 DEBUG Processing 91/469 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:52,055 DEBUG Processing 164/881 atomic regions from SNP 49041 to 49641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,061 DEBUG Processing 90/1013 atomic regions from SNP 26744 to 27344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,105 DEBUG Processing 211/215 atomic regions from SNP 63151 to 63751 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,173 DEBUG Processing 84/1129 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,220 DEBUG Processing 152/847 atomic regions from SNP 45451 to 46052 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,363 DEBUG Processing 165/881 atomic regions from SNP 49341 to 49941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,363 DEBUG Processing 92/469 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:52,388 DEBUG Processing 91/1013 atomic regions from SNP 27044 to 27644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,461 DEBUG Processing 212/215 atomic regions from SNP 63451 to 64051 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,512 DEBUG Processing 85/1129 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,524 DEBUG Processing 153/847 atomic regions from SNP 45752 to 46353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,669 DEBUG Processing 166/881 atomic regions from SNP 49641 to 50241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,672 DEBUG Processing 93/469 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:52,737 DEBUG Processing 92/1013 atomic regions from SNP 27344 to 27944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,815 DEBUG Processing 213/215 atomic regions from SNP 63751 to 64351 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,829 DEBUG Processing 154/847 atomic regions from SNP 46053 to 46654 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,849 DEBUG Processing 86/1129 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,976 DEBUG Processing 167/881 atomic regions from SNP 49941 to 50541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,981 DEBUG Processing 94/469 atomic regions from SNP 27993 to 28593 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:53,071 DEBUG Processing 93/1013 atomic regions from SNP 27644 to 28244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,133 DEBUG Processing 155/847 atomic regions from SNP 46354 to 46955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,159 DEBUG Processing 214/215 atomic regions from SNP 64051 to 64651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,185 DEBUG Processing 87/1129 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,277 DEBUG Processing 168/881 atomic regions from SNP 50241 to 50841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,287 DEBUG Processing 95/469 atomic regions from SNP 28293 to 28893 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:53,417 DEBUG Processing 94/1013 atomic regions from SNP 27944 to 28544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,450 DEBUG Processing 156/847 atomic regions from SNP 46655 to 47256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,499 DEBUG Processing 215/215 atomic regions from SNP 64351 to 64951 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,518 DEBUG Processing 88/1129 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,579 DEBUG Processing 169/881 atomic regions from SNP 50541 to 51141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,591 DEBUG Processing 96/469 atomic regions from SNP 28593 to 29193 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:53,740 DEBUG Processing 95/1013 atomic regions from SNP 28244 to 28844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,744 DEBUG Unique SNPs positions in subchromosome 1: 64952 2025-01-31 09:43:53,780 DEBUG Processing 157/847 atomic regions from SNP 46956 to 47557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,854 DEBUG Processing 89/1129 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,874 DEBUG Subchromosome time: 76.61340435501188, subchromosome SNPs: 64952 2025-01-31 09:43:53,901 DEBUG Processing 170/881 atomic regions from SNP 50841 to 51441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,918 DEBUG Processing 97/469 atomic regions from SNP 28893 to 29493 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:53,920 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:54,058 DEBUG Processing 96/1013 atomic regions from SNP 28544 to 29144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,081 DEBUG Processing 158/847 atomic regions from SNP 47257 to 47858 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,191 DEBUG Processing 90/1129 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,200 DEBUG Processing 171/881 atomic regions from SNP 51141 to 51741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,240 DEBUG Processing 98/469 atomic regions from SNP 29193 to 29793 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:54,375 DEBUG Processing 97/1013 atomic regions from SNP 28844 to 29444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,380 DEBUG Processing 159/847 atomic regions from SNP 47558 to 48159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,500 DEBUG Processing 172/881 atomic regions from SNP 51441 to 52041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,524 DEBUG Processing 91/1129 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,548 DEBUG Processing 99/469 atomic regions from SNP 29493 to 30093 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:54,679 DEBUG Processing 160/847 atomic regions from SNP 47859 to 48460 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,695 DEBUG Processing 98/1013 atomic regions from SNP 29144 to 29744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,801 DEBUG Processing 173/881 atomic regions from SNP 51741 to 52341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,856 DEBUG Processing 92/1129 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,859 DEBUG Processing 100/469 atomic regions from SNP 29793 to 30393 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:54,993 DEBUG Processing 161/847 atomic regions from SNP 48160 to 48761 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,016 DEBUG Processing 99/1013 atomic regions from SNP 29444 to 30044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,102 DEBUG Processing 174/881 atomic regions from SNP 52041 to 52641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,165 DEBUG Processing 101/469 atomic regions from SNP 30093 to 30693 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:55,189 DEBUG Processing 93/1129 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,319 DEBUG Processing 162/847 atomic regions from SNP 48461 to 49062 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,338 DEBUG Processing 100/1013 atomic regions from SNP 29744 to 30344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,402 DEBUG Processing 175/881 atomic regions from SNP 52341 to 52941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,473 DEBUG Processing 102/469 atomic regions from SNP 30393 to 30993 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:55,518 DEBUG Processing 94/1129 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,639 DEBUG Processing 163/847 atomic regions from SNP 48762 to 49363 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,659 DEBUG Processing 101/1013 atomic regions from SNP 30044 to 30644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,701 DEBUG Processing 176/881 atomic regions from SNP 52641 to 53241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,779 DEBUG Processing 103/469 atomic regions from SNP 30693 to 31293 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:55,847 DEBUG Processing 95/1129 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,971 DEBUG Processing 164/847 atomic regions from SNP 49063 to 49664 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,981 DEBUG Processing 102/1013 atomic regions from SNP 30344 to 30944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,001 DEBUG Processing 177/881 atomic regions from SNP 52941 to 53541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,084 DEBUG Processing 104/469 atomic regions from SNP 30993 to 31593 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:56,178 DEBUG Processing 96/1129 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,300 DEBUG Processing 178/881 atomic regions from SNP 53241 to 53841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,301 DEBUG Processing 165/847 atomic regions from SNP 49364 to 49965 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,305 DEBUG Processing 103/1013 atomic regions from SNP 30644 to 31244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,389 DEBUG Processing 105/469 atomic regions from SNP 31293 to 31893 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:56,505 DEBUG Processing 97/1129 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,602 DEBUG Processing 179/881 atomic regions from SNP 53541 to 54141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,627 DEBUG Processing 104/1013 atomic regions from SNP 30944 to 31544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,635 DEBUG Processing 166/847 atomic regions from SNP 49665 to 50266 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,694 DEBUG Processing 106/469 atomic regions from SNP 31593 to 32193 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:56,828 DEBUG Processing 98/1129 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,900 DEBUG Processing 180/881 atomic regions from SNP 53841 to 54441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,949 DEBUG Processing 167/847 atomic regions from SNP 49966 to 50567 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,957 DEBUG Processing 105/1013 atomic regions from SNP 31244 to 31844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,998 DEBUG Processing 107/469 atomic regions from SNP 31893 to 32493 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:57,154 DEBUG Processing 99/1129 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,199 DEBUG Processing 181/881 atomic regions from SNP 54141 to 54741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,247 DEBUG Processing 168/847 atomic regions from SNP 50267 to 50868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,299 DEBUG Processing 106/1013 atomic regions from SNP 31544 to 32144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,301 DEBUG Processing 108/469 atomic regions from SNP 32193 to 32793 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:57,486 DEBUG Processing 100/1129 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,500 DEBUG Processing 182/881 atomic regions from SNP 54441 to 55041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,546 DEBUG Processing 169/847 atomic regions from SNP 50568 to 51169 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,611 DEBUG Processing 109/469 atomic regions from SNP 32493 to 33093 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:57,617 DEBUG Processing 107/1013 atomic regions from SNP 31844 to 32444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,801 DEBUG Processing 183/881 atomic regions from SNP 54741 to 55341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,817 DEBUG Processing 101/1129 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,854 DEBUG Processing 170/847 atomic regions from SNP 50869 to 51470 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,921 DEBUG Processing 110/469 atomic regions from SNP 32793 to 33393 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:57,937 DEBUG Processing 108/1013 atomic regions from SNP 32144 to 32744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,100 DEBUG Processing 184/881 atomic regions from SNP 55041 to 55641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,151 DEBUG Processing 102/1129 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,179 DEBUG Processing 171/847 atomic regions from SNP 51170 to 51771 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,228 DEBUG Processing 111/469 atomic regions from SNP 33093 to 33693 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:58,257 DEBUG Processing 109/1013 atomic regions from SNP 32444 to 33044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,395 DEBUG Processing 185/881 atomic regions from SNP 55341 to 55941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,486 DEBUG Processing 103/1129 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,515 DEBUG Processing 172/847 atomic regions from SNP 51471 to 52072 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,536 DEBUG Processing 112/469 atomic regions from SNP 33393 to 33993 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:58,577 DEBUG Processing 110/1013 atomic regions from SNP 32744 to 33344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,689 DEBUG Processing 186/881 atomic regions from SNP 55641 to 56241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,817 DEBUG Processing 104/1129 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,823 DEBUG Processing 173/847 atomic regions from SNP 51772 to 52373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,843 DEBUG Processing 113/469 atomic regions from SNP 33693 to 34293 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:58,896 DEBUG Processing 111/1013 atomic regions from SNP 33044 to 33644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,985 DEBUG Processing 187/881 atomic regions from SNP 55941 to 56541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,152 DEBUG Processing 105/1129 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,153 DEBUG Processing 114/469 atomic regions from SNP 33993 to 34593 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:59,156 DEBUG Processing 174/847 atomic regions from SNP 52073 to 52674 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,217 DEBUG Processing 112/1013 atomic regions from SNP 33344 to 33944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,277 DEBUG Processing 188/881 atomic regions from SNP 56241 to 56841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,462 DEBUG Processing 115/469 atomic regions from SNP 34293 to 34893 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:59,485 DEBUG Processing 175/847 atomic regions from SNP 52374 to 52975 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,488 DEBUG Processing 106/1129 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,538 DEBUG Processing 113/1013 atomic regions from SNP 33644 to 34244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,568 DEBUG Processing 189/881 atomic regions from SNP 56541 to 57141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,770 DEBUG Processing 116/469 atomic regions from SNP 34593 to 35193 for chrX (subchromosome 3 of 4). 2025-01-31 09:43:59,791 DEBUG Processing 176/847 atomic regions from SNP 52675 to 53276 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,826 DEBUG Processing 107/1129 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,861 DEBUG Processing 114/1013 atomic regions from SNP 33944 to 34544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,867 DEBUG Processing 190/881 atomic regions from SNP 56841 to 57441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,077 DEBUG Processing 117/469 atomic regions from SNP 34893 to 35493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:00,097 DEBUG Processing 177/847 atomic regions from SNP 52976 to 53577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,165 DEBUG Processing 108/1129 atomic regions from SNP 32207 to 32807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,167 DEBUG Processing 191/881 atomic regions from SNP 57141 to 57741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,184 DEBUG Processing 115/1013 atomic regions from SNP 34244 to 34844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,381 DEBUG Processing 118/469 atomic regions from SNP 35193 to 35793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:00,408 DEBUG Processing 178/847 atomic regions from SNP 53277 to 53878 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,470 DEBUG Processing 192/881 atomic regions from SNP 57441 to 58041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,501 DEBUG Processing 109/1129 atomic regions from SNP 32507 to 33107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,505 DEBUG Processing 116/1013 atomic regions from SNP 34544 to 35144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,683 DEBUG Processing 119/469 atomic regions from SNP 35493 to 36093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:00,708 DEBUG Processing 179/847 atomic regions from SNP 53578 to 54179 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,771 DEBUG Processing 193/881 atomic regions from SNP 57741 to 58341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,827 DEBUG Processing 117/1013 atomic regions from SNP 34844 to 35444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,834 DEBUG Processing 110/1129 atomic regions from SNP 32807 to 33407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,987 DEBUG Processing 120/469 atomic regions from SNP 35793 to 36393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:01,006 DEBUG Processing 180/847 atomic regions from SNP 53879 to 54480 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,073 DEBUG Processing 194/881 atomic regions from SNP 58041 to 58641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,147 DEBUG Processing 118/1013 atomic regions from SNP 35144 to 35744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,167 DEBUG Processing 111/1129 atomic regions from SNP 33107 to 33707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,294 DEBUG Processing 121/469 atomic regions from SNP 36093 to 36693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:01,304 DEBUG Processing 181/847 atomic regions from SNP 54180 to 54781 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,374 DEBUG Processing 195/881 atomic regions from SNP 58341 to 58941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,470 DEBUG Processing 119/1013 atomic regions from SNP 35444 to 36044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,497 DEBUG Processing 112/1129 atomic regions from SNP 33407 to 34007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,603 DEBUG Processing 122/469 atomic regions from SNP 36393 to 36993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:01,606 DEBUG Processing 182/847 atomic regions from SNP 54481 to 55082 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,672 DEBUG Processing 196/881 atomic regions from SNP 58641 to 59241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,787 DEBUG Processing 120/1013 atomic regions from SNP 35744 to 36344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,827 DEBUG Processing 113/1129 atomic regions from SNP 33707 to 34307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,910 DEBUG Processing 123/469 atomic regions from SNP 36693 to 37293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:01,917 DEBUG Processing 183/847 atomic regions from SNP 54782 to 55383 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,971 DEBUG Processing 197/881 atomic regions from SNP 58941 to 59541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,106 DEBUG Processing 121/1013 atomic regions from SNP 36044 to 36644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,158 DEBUG Processing 114/1129 atomic regions from SNP 34007 to 34607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,216 DEBUG Processing 124/469 atomic regions from SNP 36993 to 37593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:02,248 DEBUG Processing 184/847 atomic regions from SNP 55083 to 55684 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,269 DEBUG Processing 198/881 atomic regions from SNP 59241 to 59841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,423 DEBUG Processing 122/1013 atomic regions from SNP 36344 to 36944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,490 DEBUG Processing 115/1129 atomic regions from SNP 34307 to 34907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,524 DEBUG Processing 125/469 atomic regions from SNP 37293 to 37893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:02,570 DEBUG Processing 199/881 atomic regions from SNP 59541 to 60141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,582 DEBUG Processing 185/847 atomic regions from SNP 55384 to 55985 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,738 DEBUG Processing 123/1013 atomic regions from SNP 36644 to 37244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,824 DEBUG Processing 116/1129 atomic regions from SNP 34607 to 35207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,832 DEBUG Processing 126/469 atomic regions from SNP 37593 to 38193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:02,870 DEBUG Processing 200/881 atomic regions from SNP 59841 to 60441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,901 DEBUG Processing 186/847 atomic regions from SNP 55685 to 56286 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,050 DEBUG Processing 124/1013 atomic regions from SNP 36944 to 37544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,141 DEBUG Processing 127/469 atomic regions from SNP 37893 to 38493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:03,162 DEBUG Processing 117/1129 atomic regions from SNP 34907 to 35507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,170 DEBUG Processing 201/881 atomic regions from SNP 60141 to 60741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,198 DEBUG Processing 187/847 atomic regions from SNP 55986 to 56587 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,364 DEBUG Processing 125/1013 atomic regions from SNP 37244 to 37844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,450 DEBUG Processing 128/469 atomic regions from SNP 38193 to 38793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:03,475 DEBUG Processing 202/881 atomic regions from SNP 60441 to 61041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,498 DEBUG Processing 188/847 atomic regions from SNP 56287 to 56888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,500 DEBUG Processing 118/1129 atomic regions from SNP 35207 to 35807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,677 DEBUG Processing 126/1013 atomic regions from SNP 37544 to 38144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,758 DEBUG Processing 129/469 atomic regions from SNP 38493 to 39093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:03,778 DEBUG Processing 203/881 atomic regions from SNP 60741 to 61341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,800 DEBUG Processing 189/847 atomic regions from SNP 56588 to 57189 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,835 DEBUG Processing 119/1129 atomic regions from SNP 35507 to 36107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,003 DEBUG Processing 127/1013 atomic regions from SNP 37844 to 38444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,066 DEBUG Processing 130/469 atomic regions from SNP 38793 to 39393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:04,081 DEBUG Processing 204/881 atomic regions from SNP 61041 to 61641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,102 DEBUG Processing 190/847 atomic regions from SNP 56889 to 57490 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,167 DEBUG Processing 120/1129 atomic regions from SNP 35807 to 36407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,349 DEBUG Processing 128/1013 atomic regions from SNP 38144 to 38744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,375 DEBUG Processing 131/469 atomic regions from SNP 39093 to 39693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:04,385 DEBUG Processing 205/881 atomic regions from SNP 61341 to 61941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,404 DEBUG Processing 191/847 atomic regions from SNP 57190 to 57791 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,494 DEBUG Processing 121/1129 atomic regions from SNP 36107 to 36707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,686 DEBUG Processing 132/469 atomic regions from SNP 39393 to 39993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:04,692 DEBUG Processing 206/881 atomic regions from SNP 61641 to 62241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,703 DEBUG Processing 129/1013 atomic regions from SNP 38444 to 39044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,709 DEBUG Processing 192/847 atomic regions from SNP 57491 to 58092 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,822 DEBUG Processing 122/1129 atomic regions from SNP 36407 to 37007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,995 DEBUG Processing 133/469 atomic regions from SNP 39693 to 40293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:04,999 DEBUG Processing 207/881 atomic regions from SNP 61941 to 62541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,014 DEBUG Processing 193/847 atomic regions from SNP 57792 to 58393 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,062 DEBUG Processing 130/1013 atomic regions from SNP 38744 to 39344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,150 DEBUG Processing 123/1129 atomic regions from SNP 36707 to 37307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,302 DEBUG Processing 208/881 atomic regions from SNP 62241 to 62841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,303 DEBUG Processing 134/469 atomic regions from SNP 39993 to 40593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:05,317 DEBUG Processing 194/847 atomic regions from SNP 58093 to 58694 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,422 DEBUG Processing 131/1013 atomic regions from SNP 39044 to 39644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,480 DEBUG Processing 124/1129 atomic regions from SNP 37007 to 37607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,605 DEBUG Processing 209/881 atomic regions from SNP 62541 to 63141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,612 DEBUG Processing 135/469 atomic regions from SNP 40293 to 40893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:05,620 DEBUG Processing 195/847 atomic regions from SNP 58394 to 58995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,771 DEBUG Processing 132/1013 atomic regions from SNP 39344 to 39944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,812 DEBUG Processing 125/1129 atomic regions from SNP 37307 to 37907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,908 DEBUG Processing 210/881 atomic regions from SNP 62841 to 63441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,921 DEBUG Processing 136/469 atomic regions from SNP 40593 to 41193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:05,943 DEBUG Processing 196/847 atomic regions from SNP 58695 to 59296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,093 DEBUG Processing 133/1013 atomic regions from SNP 39644 to 40244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,144 DEBUG Processing 126/1129 atomic regions from SNP 37607 to 38207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,210 DEBUG Processing 211/881 atomic regions from SNP 63141 to 63741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,229 DEBUG Processing 137/469 atomic regions from SNP 40893 to 41493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:06,241 DEBUG Processing 197/847 atomic regions from SNP 58996 to 59596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,438 DEBUG Processing 134/1013 atomic regions from SNP 39944 to 40544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,475 DEBUG Processing 127/1129 atomic regions from SNP 37907 to 38507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,510 DEBUG Processing 212/881 atomic regions from SNP 63441 to 64041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,538 DEBUG Processing 138/469 atomic regions from SNP 41193 to 41793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:06,540 DEBUG Processing 198/847 atomic regions from SNP 59296 to 59896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,795 DEBUG Processing 135/1013 atomic regions from SNP 40244 to 40844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,812 DEBUG Processing 128/1129 atomic regions from SNP 38207 to 38807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,812 DEBUG Processing 213/881 atomic regions from SNP 63741 to 64341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,842 DEBUG Processing 199/847 atomic regions from SNP 59596 to 60196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,846 DEBUG Processing 139/469 atomic regions from SNP 41493 to 42093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:07,120 DEBUG Processing 214/881 atomic regions from SNP 64041 to 64641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,146 DEBUG Processing 200/847 atomic regions from SNP 59896 to 60496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,149 DEBUG Processing 136/1013 atomic regions from SNP 40544 to 41144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,151 DEBUG Processing 129/1129 atomic regions from SNP 38507 to 39107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,155 DEBUG Processing 140/469 atomic regions from SNP 41793 to 42393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:07,425 DEBUG Processing 215/881 atomic regions from SNP 64341 to 64941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,454 DEBUG Processing 201/847 atomic regions from SNP 60196 to 60796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,466 DEBUG Processing 141/469 atomic regions from SNP 42093 to 42693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:07,492 DEBUG Processing 130/1129 atomic regions from SNP 38807 to 39407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,510 DEBUG Processing 137/1013 atomic regions from SNP 40844 to 41444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,724 DEBUG Processing 216/881 atomic regions from SNP 64641 to 65241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,758 DEBUG Processing 202/847 atomic regions from SNP 60496 to 61096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,774 DEBUG Processing 142/469 atomic regions from SNP 42393 to 42993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:07,826 DEBUG Processing 131/1129 atomic regions from SNP 39107 to 39707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,858 DEBUG Processing 138/1013 atomic regions from SNP 41144 to 41744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,021 DEBUG Processing 217/881 atomic regions from SNP 64941 to 65541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,058 DEBUG Processing 203/847 atomic regions from SNP 60796 to 61396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,082 DEBUG Processing 143/469 atomic regions from SNP 42693 to 43293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:08,162 DEBUG Processing 132/1129 atomic regions from SNP 39407 to 40007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,181 DEBUG Processing 139/1013 atomic regions from SNP 41444 to 42044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,318 DEBUG Processing 218/881 atomic regions from SNP 65241 to 65841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,357 DEBUG Processing 204/847 atomic regions from SNP 61096 to 61696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,389 DEBUG Processing 144/469 atomic regions from SNP 42993 to 43593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:08,492 DEBUG Processing 133/1129 atomic regions from SNP 39707 to 40307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,527 DEBUG Processing 140/1013 atomic regions from SNP 41744 to 42344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,617 DEBUG Processing 219/881 atomic regions from SNP 65541 to 66141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,655 DEBUG Processing 205/847 atomic regions from SNP 61396 to 61996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,694 DEBUG Processing 145/469 atomic regions from SNP 43293 to 43893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:08,826 DEBUG Processing 134/1129 atomic regions from SNP 40007 to 40607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,860 DEBUG Processing 141/1013 atomic regions from SNP 42044 to 42644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,916 DEBUG Processing 220/881 atomic regions from SNP 65841 to 66441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,950 DEBUG Processing 206/847 atomic regions from SNP 61696 to 62296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,997 DEBUG Processing 146/469 atomic regions from SNP 43593 to 44193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:09,156 DEBUG Processing 135/1129 atomic regions from SNP 40307 to 40907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,187 DEBUG Processing 142/1013 atomic regions from SNP 42344 to 42944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,215 DEBUG Processing 221/881 atomic regions from SNP 66141 to 66741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,244 DEBUG Processing 207/847 atomic regions from SNP 61996 to 62596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,297 DEBUG Processing 147/469 atomic regions from SNP 43893 to 44493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:09,488 DEBUG Processing 136/1129 atomic regions from SNP 40607 to 41207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,516 DEBUG Processing 222/881 atomic regions from SNP 66441 to 67041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,541 DEBUG Processing 143/1013 atomic regions from SNP 42644 to 43244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,543 DEBUG Processing 208/847 atomic regions from SNP 62296 to 62896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,598 DEBUG Processing 148/469 atomic regions from SNP 44193 to 44793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:09,816 DEBUG Processing 223/881 atomic regions from SNP 66741 to 67341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,820 DEBUG Processing 137/1129 atomic regions from SNP 40907 to 41507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,843 DEBUG Processing 209/847 atomic regions from SNP 62596 to 63196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,895 DEBUG Processing 144/1013 atomic regions from SNP 42944 to 43544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,900 DEBUG Processing 149/469 atomic regions from SNP 44493 to 45093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:10,118 DEBUG Processing 224/881 atomic regions from SNP 67041 to 67641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,144 DEBUG Processing 210/847 atomic regions from SNP 62896 to 63496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,158 DEBUG Processing 138/1129 atomic regions from SNP 41207 to 41807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,208 DEBUG Processing 150/469 atomic regions from SNP 44793 to 45393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:10,245 DEBUG Processing 145/1013 atomic regions from SNP 43244 to 43844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,417 DEBUG Processing 225/881 atomic regions from SNP 67341 to 67941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,444 DEBUG Processing 211/847 atomic regions from SNP 63196 to 63796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,492 DEBUG Processing 139/1129 atomic regions from SNP 41507 to 42107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,514 DEBUG Processing 151/469 atomic regions from SNP 45093 to 45693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:10,578 DEBUG Processing 146/1013 atomic regions from SNP 43544 to 44144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,713 DEBUG Processing 226/881 atomic regions from SNP 67641 to 68241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,742 DEBUG Processing 212/847 atomic regions from SNP 63496 to 64096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,820 DEBUG Processing 152/469 atomic regions from SNP 45393 to 45993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:10,826 DEBUG Processing 140/1129 atomic regions from SNP 41807 to 42407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,922 DEBUG Processing 147/1013 atomic regions from SNP 43844 to 44444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,007 DEBUG Processing 227/881 atomic regions from SNP 67941 to 68541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,036 DEBUG Processing 213/847 atomic regions from SNP 63796 to 64396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,127 DEBUG Processing 153/469 atomic regions from SNP 45693 to 46293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:11,162 DEBUG Processing 141/1129 atomic regions from SNP 42107 to 42707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,266 DEBUG Processing 148/1013 atomic regions from SNP 44144 to 44744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,306 DEBUG Processing 228/881 atomic regions from SNP 68241 to 68841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,332 DEBUG Processing 214/847 atomic regions from SNP 64096 to 64696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,432 DEBUG Processing 154/469 atomic regions from SNP 45993 to 46593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:11,492 DEBUG Processing 142/1129 atomic regions from SNP 42407 to 43007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,596 DEBUG Processing 149/1013 atomic regions from SNP 44444 to 45044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,604 DEBUG Processing 229/881 atomic regions from SNP 68541 to 69141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,629 DEBUG Processing 215/847 atomic regions from SNP 64396 to 64996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,737 DEBUG Processing 155/469 atomic regions from SNP 46293 to 46893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:11,820 DEBUG Processing 143/1129 atomic regions from SNP 42707 to 43307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,906 DEBUG Processing 230/881 atomic regions from SNP 68841 to 69441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,927 DEBUG Processing 216/847 atomic regions from SNP 64696 to 65296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,947 DEBUG Processing 150/1013 atomic regions from SNP 44744 to 45344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,043 DEBUG Processing 156/469 atomic regions from SNP 46593 to 47193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:12,152 DEBUG Processing 144/1129 atomic regions from SNP 43007 to 43607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,207 DEBUG Processing 231/881 atomic regions from SNP 69141 to 69741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,225 DEBUG Processing 217/847 atomic regions from SNP 64996 to 65596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,300 DEBUG Processing 151/1013 atomic regions from SNP 45044 to 45644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,346 DEBUG Processing 157/469 atomic regions from SNP 46893 to 47493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:12,483 DEBUG Processing 145/1129 atomic regions from SNP 43307 to 43907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,509 DEBUG Processing 232/881 atomic regions from SNP 69441 to 70041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,524 DEBUG Processing 218/847 atomic regions from SNP 65296 to 65896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,642 DEBUG Processing 152/1013 atomic regions from SNP 45344 to 45944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,650 DEBUG Processing 158/469 atomic regions from SNP 47193 to 47793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:12,812 DEBUG Processing 233/881 atomic regions from SNP 69741 to 70341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,824 DEBUG Processing 146/1129 atomic regions from SNP 43607 to 44207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,825 DEBUG Processing 219/847 atomic regions from SNP 65596 to 66196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,958 DEBUG Processing 159/469 atomic regions from SNP 47493 to 48093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:12,988 DEBUG Processing 153/1013 atomic regions from SNP 45644 to 46244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,116 DEBUG Processing 234/881 atomic regions from SNP 70041 to 70641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,127 DEBUG Processing 220/847 atomic regions from SNP 65896 to 66496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,161 DEBUG Processing 147/1129 atomic regions from SNP 43907 to 44507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,265 DEBUG Processing 160/469 atomic regions from SNP 47793 to 48393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:13,318 DEBUG Processing 154/1013 atomic regions from SNP 45944 to 46544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,420 DEBUG Processing 235/881 atomic regions from SNP 70341 to 70941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,428 DEBUG Processing 221/847 atomic regions from SNP 66196 to 66796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,492 DEBUG Processing 148/1129 atomic regions from SNP 44207 to 44807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,570 DEBUG Processing 161/469 atomic regions from SNP 48093 to 48693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:13,637 DEBUG Processing 155/1013 atomic regions from SNP 46244 to 46844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,722 DEBUG Processing 236/881 atomic regions from SNP 70641 to 71241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,729 DEBUG Processing 222/847 atomic regions from SNP 66496 to 67096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,822 DEBUG Processing 149/1129 atomic regions from SNP 44507 to 45107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,876 DEBUG Processing 162/469 atomic regions from SNP 48393 to 48993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:13,964 DEBUG Processing 156/1013 atomic regions from SNP 46544 to 47144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,023 DEBUG Processing 237/881 atomic regions from SNP 70941 to 71541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,027 DEBUG Processing 223/847 atomic regions from SNP 66796 to 67396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,153 DEBUG Processing 150/1129 atomic regions from SNP 44807 to 45407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,181 DEBUG Processing 163/469 atomic regions from SNP 48693 to 49293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:14,313 DEBUG Processing 157/1013 atomic regions from SNP 46844 to 47444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,326 DEBUG Processing 238/881 atomic regions from SNP 71241 to 71841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,327 DEBUG Processing 224/847 atomic regions from SNP 67096 to 67696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,485 DEBUG Processing 151/1129 atomic regions from SNP 45107 to 45707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,488 DEBUG Processing 164/469 atomic regions from SNP 48993 to 49593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:14,631 DEBUG Processing 225/847 atomic regions from SNP 67396 to 67996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,633 DEBUG Processing 239/881 atomic regions from SNP 71541 to 72141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,673 DEBUG Processing 158/1013 atomic regions from SNP 47144 to 47744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,793 DEBUG Processing 165/469 atomic regions from SNP 49293 to 49893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:14,819 DEBUG Processing 152/1129 atomic regions from SNP 45407 to 46007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,934 DEBUG Processing 226/847 atomic regions from SNP 67696 to 68296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,937 DEBUG Processing 240/881 atomic regions from SNP 71841 to 72441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,031 DEBUG Processing 159/1013 atomic regions from SNP 47444 to 48044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,098 DEBUG Processing 166/469 atomic regions from SNP 49593 to 50193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:15,148 DEBUG Processing 153/1129 atomic regions from SNP 45707 to 46307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,232 DEBUG Processing 227/847 atomic regions from SNP 67996 to 68596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,237 DEBUG Processing 241/881 atomic regions from SNP 72141 to 72741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,389 DEBUG Processing 160/1013 atomic regions from SNP 47744 to 48344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,405 DEBUG Processing 167/469 atomic regions from SNP 49893 to 50493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:15,480 DEBUG Processing 154/1129 atomic regions from SNP 46007 to 46607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,529 DEBUG Processing 228/847 atomic regions from SNP 68296 to 68896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,536 DEBUG Processing 242/881 atomic regions from SNP 72441 to 73041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,711 DEBUG Processing 168/469 atomic regions from SNP 50193 to 50793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:15,745 DEBUG Processing 161/1013 atomic regions from SNP 48044 to 48644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,815 DEBUG Processing 155/1129 atomic regions from SNP 46307 to 46907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,828 DEBUG Processing 229/847 atomic regions from SNP 68596 to 69196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,834 DEBUG Processing 243/881 atomic regions from SNP 72741 to 73341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,012 DEBUG Processing 169/469 atomic regions from SNP 50493 to 51093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:16,099 DEBUG Processing 162/1013 atomic regions from SNP 48344 to 48944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,130 DEBUG Processing 230/847 atomic regions from SNP 68896 to 69496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,136 DEBUG Processing 244/881 atomic regions from SNP 73041 to 73641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,151 DEBUG Processing 156/1129 atomic regions from SNP 46607 to 47207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,312 DEBUG Processing 170/469 atomic regions from SNP 50793 to 51393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:16,432 DEBUG Processing 231/847 atomic regions from SNP 69196 to 69796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,439 DEBUG Processing 245/881 atomic regions from SNP 73341 to 73941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,441 DEBUG Processing 163/1013 atomic regions from SNP 48644 to 49244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,508 DEBUG Processing 157/1129 atomic regions from SNP 46907 to 47507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,612 DEBUG Processing 171/469 atomic regions from SNP 51093 to 51693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:16,734 DEBUG Processing 232/847 atomic regions from SNP 69496 to 70096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,742 DEBUG Processing 246/881 atomic regions from SNP 73641 to 74241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,792 DEBUG Processing 164/1013 atomic regions from SNP 48944 to 49544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,843 DEBUG Processing 158/1129 atomic regions from SNP 47207 to 47807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,913 DEBUG Processing 172/469 atomic regions from SNP 51393 to 51993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:17,029 DEBUG Segmenting atomic regions: 2025-01-31 09:44:17,033 DEBUG Processing 233/847 atomic regions from SNP 69796 to 70396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,042 DEBUG Processing 247/881 atomic regions from SNP 73941 to 74541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,140 DEBUG Processing 1/642 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,152 DEBUG Processing 165/1013 atomic regions from SNP 49244 to 49844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,175 DEBUG Processing 159/1129 atomic regions from SNP 47507 to 48107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,216 DEBUG Processing 173/469 atomic regions from SNP 51693 to 52293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:17,334 DEBUG Processing 234/847 atomic regions from SNP 70096 to 70696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,343 DEBUG Processing 248/881 atomic regions from SNP 74241 to 74841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,484 DEBUG Processing 2/642 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,511 DEBUG Processing 166/1013 atomic regions from SNP 49544 to 50144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,516 DEBUG Processing 160/1129 atomic regions from SNP 47807 to 48407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,525 DEBUG Processing 174/469 atomic regions from SNP 51993 to 52593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:17,637 DEBUG Processing 235/847 atomic regions from SNP 70396 to 70996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,647 DEBUG Processing 249/881 atomic regions from SNP 74541 to 75141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,828 DEBUG Processing 3/642 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,836 DEBUG Processing 175/469 atomic regions from SNP 52293 to 52893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:17,860 DEBUG Processing 161/1129 atomic regions from SNP 48107 to 48707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,861 DEBUG Processing 167/1013 atomic regions from SNP 49844 to 50444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,938 DEBUG Processing 236/847 atomic regions from SNP 70696 to 71296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,950 DEBUG Processing 250/881 atomic regions from SNP 74841 to 75441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,146 DEBUG Processing 176/469 atomic regions from SNP 52593 to 53193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:18,149 DEBUG Processing 4/642 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,205 DEBUG Processing 168/1013 atomic regions from SNP 50144 to 50744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,205 DEBUG Processing 162/1129 atomic regions from SNP 48407 to 49007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,240 DEBUG Processing 237/847 atomic regions from SNP 70996 to 71596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,251 DEBUG Processing 251/881 atomic regions from SNP 75141 to 75741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,454 DEBUG Processing 177/469 atomic regions from SNP 52893 to 53493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:18,500 DEBUG Processing 5/642 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,545 DEBUG Processing 238/847 atomic regions from SNP 71296 to 71896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,546 DEBUG Processing 163/1129 atomic regions from SNP 48707 to 49307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,549 DEBUG Processing 169/1013 atomic regions from SNP 50444 to 51044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,556 DEBUG Processing 252/881 atomic regions from SNP 75441 to 76041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,758 DEBUG Processing 178/469 atomic regions from SNP 53193 to 53793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:18,855 DEBUG Processing 239/847 atomic regions from SNP 71596 to 72196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,856 DEBUG Processing 6/642 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,864 DEBUG Processing 253/881 atomic regions from SNP 75741 to 76341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,890 DEBUG Processing 164/1129 atomic regions from SNP 49007 to 49607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,902 DEBUG Processing 170/1013 atomic regions from SNP 50744 to 51344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,057 DEBUG Processing 179/469 atomic regions from SNP 53493 to 54093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:19,162 DEBUG Processing 240/847 atomic regions from SNP 71896 to 72496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,173 DEBUG Processing 254/881 atomic regions from SNP 76041 to 76641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,196 DEBUG Processing 7/642 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,230 DEBUG Processing 165/1129 atomic regions from SNP 49307 to 49907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,253 DEBUG Processing 171/1013 atomic regions from SNP 51044 to 51644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,356 DEBUG Processing 180/469 atomic regions from SNP 53793 to 54393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:19,465 DEBUG Processing 241/847 atomic regions from SNP 72196 to 72796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,481 DEBUG Processing 255/881 atomic regions from SNP 76341 to 76941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,542 DEBUG Processing 8/642 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,569 DEBUG Processing 166/1129 atomic regions from SNP 49607 to 50207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,588 DEBUG Processing 172/1013 atomic regions from SNP 51344 to 51944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,659 DEBUG Processing 181/469 atomic regions from SNP 54093 to 54693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:19,765 DEBUG Processing 242/847 atomic regions from SNP 72496 to 73096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,785 DEBUG Processing 256/881 atomic regions from SNP 76641 to 77241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,889 DEBUG Processing 9/642 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,906 DEBUG Processing 167/1129 atomic regions from SNP 49907 to 50507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,941 DEBUG Processing 173/1013 atomic regions from SNP 51644 to 52244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,964 DEBUG Processing 182/469 atomic regions from SNP 54393 to 54993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:20,066 DEBUG Processing 243/847 atomic regions from SNP 72796 to 73396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,087 DEBUG Processing 257/881 atomic regions from SNP 76941 to 77541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,231 DEBUG Processing 10/642 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,248 DEBUG Processing 168/1129 atomic regions from SNP 50207 to 50807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,273 DEBUG Processing 183/469 atomic regions from SNP 54693 to 55293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:20,303 DEBUG Processing 174/1013 atomic regions from SNP 51944 to 52544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,368 DEBUG Processing 244/847 atomic regions from SNP 73096 to 73696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,391 DEBUG Processing 258/881 atomic regions from SNP 77241 to 77841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,555 DEBUG Processing 11/642 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,580 DEBUG Processing 184/469 atomic regions from SNP 54993 to 55593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:20,590 DEBUG Processing 169/1129 atomic regions from SNP 50507 to 51107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,664 DEBUG Processing 175/1013 atomic regions from SNP 52244 to 52844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,671 DEBUG Processing 245/847 atomic regions from SNP 73396 to 73996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,690 DEBUG Processing 259/881 atomic regions from SNP 77541 to 78141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,873 DEBUG Processing 12/642 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,891 DEBUG Processing 185/469 atomic regions from SNP 55293 to 55893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:20,931 DEBUG Processing 170/1129 atomic regions from SNP 50807 to 51407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,975 DEBUG Processing 246/847 atomic regions from SNP 73696 to 74296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,022 DEBUG Processing 176/1013 atomic regions from SNP 52544 to 53144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,022 DEBUG Processing 260/881 atomic regions from SNP 77841 to 78441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,189 DEBUG Processing 13/642 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,197 DEBUG Processing 186/469 atomic regions from SNP 55593 to 56193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:21,268 DEBUG Processing 171/1129 atomic regions from SNP 51107 to 51707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,279 DEBUG Processing 247/847 atomic regions from SNP 73996 to 74596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,356 DEBUG Processing 261/881 atomic regions from SNP 78141 to 78741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,384 DEBUG Processing 177/1013 atomic regions from SNP 52844 to 53444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,507 DEBUG Processing 187/469 atomic regions from SNP 55893 to 56493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:21,521 DEBUG Processing 14/642 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,582 DEBUG Processing 248/847 atomic regions from SNP 74296 to 74896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,605 DEBUG Processing 172/1129 atomic regions from SNP 51407 to 52007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,690 DEBUG Processing 262/881 atomic regions from SNP 78441 to 79041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,748 DEBUG Processing 178/1013 atomic regions from SNP 53144 to 53744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,813 DEBUG Processing 188/469 atomic regions from SNP 56193 to 56793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:21,867 DEBUG Processing 15/642 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,885 DEBUG Processing 249/847 atomic regions from SNP 74596 to 75196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,966 DEBUG Processing 173/1129 atomic regions from SNP 51707 to 52307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,023 DEBUG Processing 263/881 atomic regions from SNP 78741 to 79341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,089 DEBUG Processing 179/1013 atomic regions from SNP 53444 to 54044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,121 DEBUG Processing 189/469 atomic regions from SNP 56493 to 57093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:22,184 DEBUG Processing 250/847 atomic regions from SNP 74896 to 75496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,199 DEBUG Processing 16/642 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,326 DEBUG Processing 174/1129 atomic regions from SNP 52007 to 52607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,338 DEBUG Processing 264/881 atomic regions from SNP 79041 to 79641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,412 DEBUG Processing 180/1013 atomic regions from SNP 53744 to 54344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,427 DEBUG Processing 190/469 atomic regions from SNP 56793 to 57393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:22,484 DEBUG Processing 251/847 atomic regions from SNP 75196 to 75796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,523 DEBUG Processing 17/642 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,639 DEBUG Processing 265/881 atomic regions from SNP 79341 to 79941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,660 DEBUG Processing 175/1129 atomic regions from SNP 52307 to 52907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,739 DEBUG Processing 181/1013 atomic regions from SNP 54044 to 54644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,745 DEBUG Processing 191/469 atomic regions from SNP 57093 to 57693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:22,785 DEBUG Processing 252/847 atomic regions from SNP 75496 to 76096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,841 DEBUG Processing 18/642 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,938 DEBUG Processing 266/881 atomic regions from SNP 79641 to 80241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,996 DEBUG Processing 176/1129 atomic regions from SNP 52607 to 53207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,074 DEBUG Processing 182/1013 atomic regions from SNP 54344 to 54944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,079 DEBUG Processing 192/469 atomic regions from SNP 57393 to 57993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:23,085 DEBUG Processing 253/847 atomic regions from SNP 75796 to 76396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,174 DEBUG Processing 19/642 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,238 DEBUG Processing 267/881 atomic regions from SNP 79941 to 80541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,341 DEBUG Processing 177/1129 atomic regions from SNP 52907 to 53507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,389 DEBUG Processing 254/847 atomic regions from SNP 76096 to 76696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,390 DEBUG Processing 193/469 atomic regions from SNP 57693 to 58293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:23,406 DEBUG Processing 183/1013 atomic regions from SNP 54644 to 55244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,504 DEBUG Processing 20/642 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,540 DEBUG Processing 268/881 atomic regions from SNP 80241 to 80841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,694 DEBUG Processing 255/847 atomic regions from SNP 76396 to 76996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,699 DEBUG Processing 194/469 atomic regions from SNP 57993 to 58593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:23,702 DEBUG Processing 178/1129 atomic regions from SNP 53207 to 53807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,760 DEBUG Processing 184/1013 atomic regions from SNP 54944 to 55544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,841 DEBUG Processing 269/881 atomic regions from SNP 80541 to 81141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,844 DEBUG Processing 21/642 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,000 DEBUG Processing 256/847 atomic regions from SNP 76696 to 77296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,008 DEBUG Processing 195/469 atomic regions from SNP 58293 to 58893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:24,060 DEBUG Processing 179/1129 atomic regions from SNP 53507 to 54107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,099 DEBUG Processing 185/1013 atomic regions from SNP 55244 to 55844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,142 DEBUG Processing 270/881 atomic regions from SNP 80841 to 81441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,174 DEBUG Processing 22/642 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,302 DEBUG Processing 257/847 atomic regions from SNP 76996 to 77596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,314 DEBUG Processing 196/469 atomic regions from SNP 58593 to 59193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:24,426 DEBUG Processing 186/1013 atomic regions from SNP 55544 to 56144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,429 DEBUG Processing 180/1129 atomic regions from SNP 53807 to 54407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,445 DEBUG Processing 271/881 atomic regions from SNP 81141 to 81741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,517 DEBUG Processing 23/642 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,603 DEBUG Processing 258/847 atomic regions from SNP 77296 to 77896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,616 DEBUG Processing 197/469 atomic regions from SNP 58893 to 59493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:24,752 DEBUG Processing 272/881 atomic regions from SNP 81441 to 82041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,753 DEBUG Processing 187/1013 atomic regions from SNP 55844 to 56444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,781 DEBUG Processing 181/1129 atomic regions from SNP 54107 to 54707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,878 DEBUG Processing 24/642 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,908 DEBUG Processing 259/847 atomic regions from SNP 77596 to 78196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,921 DEBUG Processing 198/469 atomic regions from SNP 59193 to 59793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:25,059 DEBUG Processing 273/881 atomic regions from SNP 81741 to 82341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,085 DEBUG Processing 188/1013 atomic regions from SNP 56144 to 56744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,120 DEBUG Processing 182/1129 atomic regions from SNP 54407 to 55007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,214 DEBUG Processing 260/847 atomic regions from SNP 77896 to 78496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,220 DEBUG Processing 25/642 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,232 DEBUG Processing 199/469 atomic regions from SNP 59493 to 60093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:25,365 DEBUG Processing 274/881 atomic regions from SNP 82041 to 82641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,438 DEBUG Processing 189/1013 atomic regions from SNP 56444 to 57044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,456 DEBUG Processing 183/1129 atomic regions from SNP 54707 to 55307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,516 DEBUG Processing 261/847 atomic regions from SNP 78196 to 78796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,550 DEBUG Processing 200/469 atomic regions from SNP 59793 to 60393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:25,553 DEBUG Processing 26/642 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,661 DEBUG Processing 275/881 atomic regions from SNP 82341 to 82941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,789 DEBUG Processing 190/1013 atomic regions from SNP 56744 to 57344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,794 DEBUG Processing 184/1129 atomic regions from SNP 55007 to 55607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,817 DEBUG Processing 262/847 atomic regions from SNP 78496 to 79096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,872 DEBUG Processing 201/469 atomic regions from SNP 60093 to 60693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:25,878 DEBUG Processing 27/642 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,958 DEBUG Processing 276/881 atomic regions from SNP 82641 to 83241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,120 DEBUG Processing 263/847 atomic regions from SNP 78796 to 79396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,137 DEBUG Processing 185/1129 atomic regions from SNP 55307 to 55907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,141 DEBUG Processing 191/1013 atomic regions from SNP 57044 to 57644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,200 DEBUG Processing 28/642 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,208 DEBUG Processing 202/469 atomic regions from SNP 60393 to 60993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:26,261 DEBUG Processing 277/881 atomic regions from SNP 82941 to 83541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,423 DEBUG Processing 264/847 atomic regions from SNP 79096 to 79696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,476 DEBUG Processing 186/1129 atomic regions from SNP 55607 to 56207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,477 DEBUG Processing 192/1013 atomic regions from SNP 57344 to 57944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,520 DEBUG Processing 29/642 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,546 DEBUG Processing 203/469 atomic regions from SNP 60693 to 61293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:26,564 DEBUG Processing 278/881 atomic regions from SNP 83241 to 83841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,722 DEBUG Processing 265/847 atomic regions from SNP 79396 to 79996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,834 DEBUG Processing 193/1013 atomic regions from SNP 57644 to 58244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,837 DEBUG Processing 187/1129 atomic regions from SNP 55907 to 56507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,853 DEBUG Processing 30/642 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,870 DEBUG Processing 279/881 atomic regions from SNP 83541 to 84141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,893 DEBUG Processing 204/469 atomic regions from SNP 60993 to 61593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:27,018 DEBUG Processing 266/847 atomic regions from SNP 79696 to 80296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,181 DEBUG Processing 31/642 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,182 DEBUG Processing 280/881 atomic regions from SNP 83841 to 84441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,199 DEBUG Processing 194/1013 atomic regions from SNP 57944 to 58544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,215 DEBUG Processing 188/1129 atomic regions from SNP 56207 to 56807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,238 DEBUG Processing 205/469 atomic regions from SNP 61293 to 61893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:27,320 DEBUG Processing 267/847 atomic regions from SNP 79996 to 80596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,491 DEBUG Processing 281/881 atomic regions from SNP 84141 to 84741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,507 DEBUG Processing 32/642 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,548 DEBUG Processing 195/1013 atomic regions from SNP 58244 to 58844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,571 DEBUG Processing 206/469 atomic regions from SNP 61593 to 62193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:27,585 DEBUG Processing 189/1129 atomic regions from SNP 56507 to 57107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,619 DEBUG Processing 268/847 atomic regions from SNP 80296 to 80896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,804 DEBUG Processing 282/881 atomic regions from SNP 84441 to 85041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,835 DEBUG Processing 33/642 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,876 DEBUG Processing 196/1013 atomic regions from SNP 58544 to 59144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,920 DEBUG Processing 207/469 atomic regions from SNP 61893 to 62493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:27,925 DEBUG Processing 269/847 atomic regions from SNP 80596 to 81196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,961 DEBUG Processing 190/1129 atomic regions from SNP 56807 to 57407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,106 DEBUG Processing 283/881 atomic regions from SNP 84741 to 85341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,180 DEBUG Processing 34/642 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,206 DEBUG Processing 197/1013 atomic regions from SNP 58844 to 59444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,231 DEBUG Processing 270/847 atomic regions from SNP 80896 to 81496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,253 DEBUG Processing 208/469 atomic regions from SNP 62193 to 62793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:28,338 DEBUG Processing 191/1129 atomic regions from SNP 57107 to 57707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,405 DEBUG Processing 284/881 atomic regions from SNP 85041 to 85641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,499 DEBUG Processing 35/642 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,532 DEBUG Processing 198/1013 atomic regions from SNP 59144 to 59744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,535 DEBUG Processing 271/847 atomic regions from SNP 81196 to 81796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,560 DEBUG Processing 209/469 atomic regions from SNP 62493 to 63093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:28,707 DEBUG Processing 192/1129 atomic regions from SNP 57407 to 58007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,707 DEBUG Processing 285/881 atomic regions from SNP 85341 to 85941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,831 DEBUG Processing 36/642 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,842 DEBUG Processing 272/847 atomic regions from SNP 81496 to 82096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,863 DEBUG Processing 199/1013 atomic regions from SNP 59444 to 60044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,881 DEBUG Processing 210/469 atomic regions from SNP 62793 to 63393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:29,009 DEBUG Processing 286/881 atomic regions from SNP 85641 to 86241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,067 DEBUG Processing 193/1129 atomic regions from SNP 57707 to 58307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,152 DEBUG Processing 273/847 atomic regions from SNP 81796 to 82396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,153 DEBUG Processing 37/642 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,192 DEBUG Processing 200/1013 atomic regions from SNP 59744 to 60344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,204 DEBUG Processing 211/469 atomic regions from SNP 63093 to 63693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:29,312 DEBUG Processing 287/881 atomic regions from SNP 85941 to 86541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,407 DEBUG Processing 194/1129 atomic regions from SNP 58007 to 58607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,459 DEBUG Processing 274/847 atomic regions from SNP 82096 to 82696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,474 DEBUG Processing 38/642 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,512 DEBUG Processing 212/469 atomic regions from SNP 63393 to 63993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:29,520 DEBUG Processing 201/1013 atomic regions from SNP 60044 to 60644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,609 DEBUG Processing 288/881 atomic regions from SNP 86241 to 86841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,746 DEBUG Processing 195/1129 atomic regions from SNP 58307 to 58907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,762 DEBUG Processing 275/847 atomic regions from SNP 82396 to 82996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,793 DEBUG Processing 39/642 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,830 DEBUG Processing 213/469 atomic regions from SNP 63693 to 64293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:29,849 DEBUG Processing 202/1013 atomic regions from SNP 60344 to 60944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,907 DEBUG Processing 289/881 atomic regions from SNP 86541 to 87141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,068 DEBUG Processing 276/847 atomic regions from SNP 82696 to 83296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,101 DEBUG Processing 196/1129 atomic regions from SNP 58607 to 59207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,111 DEBUG Processing 40/642 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,163 DEBUG Processing 214/469 atomic regions from SNP 63993 to 64593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:30,177 DEBUG Processing 203/1013 atomic regions from SNP 60644 to 61244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,208 DEBUG Processing 290/881 atomic regions from SNP 86841 to 87441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,375 DEBUG Processing 277/847 atomic regions from SNP 82996 to 83596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,431 DEBUG Processing 41/642 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,444 DEBUG Processing 197/1129 atomic regions from SNP 58907 to 59507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,472 DEBUG Processing 215/469 atomic regions from SNP 64293 to 64893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:30,504 DEBUG Processing 204/1013 atomic regions from SNP 60944 to 61544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,511 DEBUG Processing 291/881 atomic regions from SNP 87141 to 87741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,680 DEBUG Processing 278/847 atomic regions from SNP 83296 to 83896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,759 DEBUG Processing 42/642 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,783 DEBUG Processing 216/469 atomic regions from SNP 64593 to 65193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:30,793 DEBUG Processing 198/1129 atomic regions from SNP 59207 to 59807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,818 DEBUG Processing 292/881 atomic regions from SNP 87441 to 88041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,838 DEBUG Processing 205/1013 atomic regions from SNP 61244 to 61844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,976 DEBUG Processing 279/847 atomic regions from SNP 83596 to 84196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,084 DEBUG Processing 43/642 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,095 DEBUG Processing 217/469 atomic regions from SNP 64893 to 65493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:31,126 DEBUG Processing 293/881 atomic regions from SNP 87741 to 88341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,164 DEBUG Processing 199/1129 atomic regions from SNP 59507 to 60107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,165 DEBUG Processing 206/1013 atomic regions from SNP 61544 to 62144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,271 DEBUG Processing 280/847 atomic regions from SNP 83896 to 84496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,403 DEBUG Processing 44/642 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,406 DEBUG Processing 218/469 atomic regions from SNP 65193 to 65793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:31,434 DEBUG Processing 294/881 atomic regions from SNP 88041 to 88641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,506 DEBUG Processing 207/1013 atomic regions from SNP 61844 to 62444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,529 DEBUG Processing 200/1129 atomic regions from SNP 59807 to 60407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,567 DEBUG Processing 281/847 atomic regions from SNP 84196 to 84796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,717 DEBUG Processing 219/469 atomic regions from SNP 65493 to 66093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:31,721 DEBUG Processing 45/642 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,735 DEBUG Processing 295/881 atomic regions from SNP 88341 to 88941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,853 DEBUG Processing 208/1013 atomic regions from SNP 62144 to 62744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,870 DEBUG Processing 201/1129 atomic regions from SNP 60107 to 60707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,871 DEBUG Processing 282/847 atomic regions from SNP 84496 to 85096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,029 DEBUG Processing 220/469 atomic regions from SNP 65793 to 66393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:32,040 DEBUG Processing 296/881 atomic regions from SNP 88641 to 89241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,040 DEBUG Processing 46/642 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,182 DEBUG Processing 209/1013 atomic regions from SNP 62444 to 63044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,183 DEBUG Processing 283/847 atomic regions from SNP 84796 to 85396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,216 DEBUG Processing 202/1129 atomic regions from SNP 60407 to 61007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,343 DEBUG Processing 221/469 atomic regions from SNP 66093 to 66693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:32,351 DEBUG Processing 297/881 atomic regions from SNP 88941 to 89541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,361 DEBUG Processing 47/642 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,491 DEBUG Processing 284/847 atomic regions from SNP 85096 to 85696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,513 DEBUG Processing 210/1013 atomic regions from SNP 62744 to 63344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,555 DEBUG Processing 203/1129 atomic regions from SNP 60707 to 61307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,655 DEBUG Processing 222/469 atomic regions from SNP 66393 to 66993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:32,659 DEBUG Processing 298/881 atomic regions from SNP 89241 to 89841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,681 DEBUG Processing 48/642 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,801 DEBUG Processing 285/847 atomic regions from SNP 85396 to 85996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,844 DEBUG Processing 211/1013 atomic regions from SNP 63044 to 63644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,891 DEBUG Processing 204/1129 atomic regions from SNP 61007 to 61607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,963 DEBUG Processing 299/881 atomic regions from SNP 89541 to 90141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,991 DEBUG Processing 223/469 atomic regions from SNP 66693 to 67293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:33,000 DEBUG Processing 49/642 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,102 DEBUG Processing 286/847 atomic regions from SNP 85696 to 86296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,180 DEBUG Processing 212/1013 atomic regions from SNP 63344 to 63944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,247 DEBUG Processing 205/1129 atomic regions from SNP 61307 to 61907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,264 DEBUG Processing 300/881 atomic regions from SNP 89841 to 90441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,312 DEBUG Processing 224/469 atomic regions from SNP 66993 to 67593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:33,318 DEBUG Processing 50/642 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,401 DEBUG Processing 287/847 atomic regions from SNP 85996 to 86596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,527 DEBUG Processing 213/1013 atomic regions from SNP 63644 to 64244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,568 DEBUG Processing 301/881 atomic regions from SNP 90141 to 90741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,599 DEBUG Processing 206/1129 atomic regions from SNP 61607 to 62207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,622 DEBUG Processing 225/469 atomic regions from SNP 67293 to 67893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:33,633 DEBUG Processing 51/642 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,701 DEBUG Processing 288/847 atomic regions from SNP 86296 to 86896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,859 DEBUG Processing 214/1013 atomic regions from SNP 63944 to 64544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,871 DEBUG Processing 302/881 atomic regions from SNP 90441 to 91041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,936 DEBUG Processing 226/469 atomic regions from SNP 67593 to 68193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:33,937 DEBUG Processing 207/1129 atomic regions from SNP 61907 to 62507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,951 DEBUG Processing 52/642 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,001 DEBUG Processing 289/847 atomic regions from SNP 86596 to 87196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,190 DEBUG Processing 303/881 atomic regions from SNP 90741 to 91341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,214 DEBUG Processing 215/1013 atomic regions from SNP 64244 to 64844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,251 DEBUG Processing 227/469 atomic regions from SNP 67893 to 68493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:34,274 DEBUG Processing 53/642 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,303 DEBUG Processing 290/847 atomic regions from SNP 86896 to 87496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,304 DEBUG Processing 208/1129 atomic regions from SNP 62207 to 62807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,492 DEBUG Processing 304/881 atomic regions from SNP 91041 to 91641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,553 DEBUG Processing 216/1013 atomic regions from SNP 64544 to 65144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,561 DEBUG Processing 228/469 atomic regions from SNP 68193 to 68793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:34,594 DEBUG Processing 54/642 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,609 DEBUG Processing 291/847 atomic regions from SNP 87196 to 87796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,673 DEBUG Processing 209/1129 atomic regions from SNP 62507 to 63107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,790 DEBUG Processing 305/881 atomic regions from SNP 91341 to 91941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,873 DEBUG Processing 229/469 atomic regions from SNP 68493 to 69093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:34,883 DEBUG Processing 217/1013 atomic regions from SNP 64844 to 65444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,914 DEBUG Processing 292/847 atomic regions from SNP 87496 to 88096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,922 DEBUG Processing 55/642 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,026 DEBUG Processing 210/1129 atomic regions from SNP 62807 to 63407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,087 DEBUG Processing 306/881 atomic regions from SNP 91641 to 92241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,186 DEBUG Processing 230/469 atomic regions from SNP 68793 to 69393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:35,213 DEBUG Processing 218/1013 atomic regions from SNP 65144 to 65744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,221 DEBUG Processing 293/847 atomic regions from SNP 87796 to 88396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,239 DEBUG Processing 56/642 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,363 DEBUG Processing 211/1129 atomic regions from SNP 63107 to 63707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,387 DEBUG Processing 307/881 atomic regions from SNP 91941 to 92541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,498 DEBUG Processing 231/469 atomic regions from SNP 69093 to 69693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:35,528 DEBUG Processing 294/847 atomic regions from SNP 88096 to 88696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,544 DEBUG Processing 219/1013 atomic regions from SNP 65444 to 66044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,557 DEBUG Processing 57/642 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,691 DEBUG Processing 308/881 atomic regions from SNP 92241 to 92841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,700 DEBUG Processing 212/1129 atomic regions from SNP 63407 to 64007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,811 DEBUG Processing 232/469 atomic regions from SNP 69393 to 69993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:35,838 DEBUG Processing 295/847 atomic regions from SNP 88396 to 88996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,875 DEBUG Processing 58/642 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,875 DEBUG Processing 220/1013 atomic regions from SNP 65744 to 66344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,994 DEBUG Processing 309/881 atomic regions from SNP 92541 to 93141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,039 DEBUG Processing 213/1129 atomic regions from SNP 63707 to 64307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,123 DEBUG Processing 233/469 atomic regions from SNP 69693 to 70293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:36,145 DEBUG Processing 296/847 atomic regions from SNP 88696 to 89296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,192 DEBUG Processing 59/642 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,203 DEBUG Processing 221/1013 atomic regions from SNP 66044 to 66644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,296 DEBUG Processing 310/881 atomic regions from SNP 92841 to 93441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,374 DEBUG Processing 214/1129 atomic regions from SNP 64007 to 64607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,432 DEBUG Processing 234/469 atomic regions from SNP 69993 to 70593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:36,448 DEBUG Processing 297/847 atomic regions from SNP 88996 to 89596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,510 DEBUG Processing 60/642 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,532 DEBUG Processing 222/1013 atomic regions from SNP 66344 to 66944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,597 DEBUG Processing 311/881 atomic regions from SNP 93141 to 93741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,709 DEBUG Processing 215/1129 atomic regions from SNP 64307 to 64907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,741 DEBUG Processing 235/469 atomic regions from SNP 70293 to 70893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:36,752 DEBUG Processing 298/847 atomic regions from SNP 89296 to 89896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,830 DEBUG Processing 61/642 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,858 DEBUG Processing 223/1013 atomic regions from SNP 66644 to 67244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,898 DEBUG Processing 312/881 atomic regions from SNP 93441 to 94041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,045 DEBUG Processing 216/1129 atomic regions from SNP 64607 to 65207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,053 DEBUG Processing 236/469 atomic regions from SNP 70593 to 71193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:37,057 DEBUG Processing 299/847 atomic regions from SNP 89596 to 90196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,146 DEBUG Processing 62/642 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,184 DEBUG Processing 224/1013 atomic regions from SNP 66944 to 67544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,201 DEBUG Processing 313/881 atomic regions from SNP 93741 to 94341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,363 DEBUG Processing 300/847 atomic regions from SNP 89896 to 90496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,363 DEBUG Processing 237/469 atomic regions from SNP 70893 to 71493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:37,384 DEBUG Processing 217/1129 atomic regions from SNP 64907 to 65507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,463 DEBUG Processing 63/642 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,507 DEBUG Processing 314/881 atomic regions from SNP 94041 to 94641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,512 DEBUG Processing 225/1013 atomic regions from SNP 67244 to 67844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,669 DEBUG Processing 301/847 atomic regions from SNP 90196 to 90796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,673 DEBUG Processing 238/469 atomic regions from SNP 71193 to 71793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:37,724 DEBUG Processing 218/1129 atomic regions from SNP 65207 to 65807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,790 DEBUG Processing 64/642 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,815 DEBUG Processing 315/881 atomic regions from SNP 94341 to 94941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,838 DEBUG Processing 226/1013 atomic regions from SNP 67544 to 68144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,974 DEBUG Processing 302/847 atomic regions from SNP 90496 to 91096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,982 DEBUG Processing 239/469 atomic regions from SNP 71493 to 72093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:38,063 DEBUG Processing 219/1129 atomic regions from SNP 65507 to 66107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,120 DEBUG Processing 316/881 atomic regions from SNP 94641 to 95241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,126 DEBUG Processing 65/642 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,166 DEBUG Processing 227/1013 atomic regions from SNP 67844 to 68444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,278 DEBUG Processing 303/847 atomic regions from SNP 90796 to 91396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,288 DEBUG Processing 240/469 atomic regions from SNP 71793 to 72393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:38,401 DEBUG Processing 220/1129 atomic regions from SNP 65807 to 66407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,427 DEBUG Processing 317/881 atomic regions from SNP 94941 to 95541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,446 DEBUG Processing 66/642 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,490 DEBUG Processing 228/1013 atomic regions from SNP 68144 to 68744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,579 DEBUG Processing 304/847 atomic regions from SNP 91096 to 91696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,593 DEBUG Processing 241/469 atomic regions from SNP 72093 to 72693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:38,734 DEBUG Processing 318/881 atomic regions from SNP 95241 to 95841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,740 DEBUG Processing 221/1129 atomic regions from SNP 66107 to 66707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,763 DEBUG Processing 67/642 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,817 DEBUG Processing 229/1013 atomic regions from SNP 68444 to 69044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,882 DEBUG Processing 305/847 atomic regions from SNP 91396 to 91996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,902 DEBUG Processing 242/469 atomic regions from SNP 72393 to 72993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:39,040 DEBUG Processing 319/881 atomic regions from SNP 95541 to 96141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,079 DEBUG Processing 68/642 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,079 DEBUG Processing 222/1129 atomic regions from SNP 66407 to 67007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,143 DEBUG Processing 230/1013 atomic regions from SNP 68744 to 69344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,186 DEBUG Processing 306/847 atomic regions from SNP 91696 to 92296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,207 DEBUG Processing 243/469 atomic regions from SNP 72693 to 73293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:39,344 DEBUG Processing 320/881 atomic regions from SNP 95841 to 96441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,394 DEBUG Processing 69/642 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,420 DEBUG Processing 223/1129 atomic regions from SNP 66707 to 67307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,471 DEBUG Processing 231/1013 atomic regions from SNP 69044 to 69644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,488 DEBUG Processing 307/847 atomic regions from SNP 91996 to 92596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,514 DEBUG Processing 244/469 atomic regions from SNP 72993 to 73593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:39,643 DEBUG Processing 321/881 atomic regions from SNP 96141 to 96741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,709 DEBUG Processing 70/642 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,761 DEBUG Processing 224/1129 atomic regions from SNP 67007 to 67607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,792 DEBUG Processing 308/847 atomic regions from SNP 92296 to 92896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,797 DEBUG Processing 232/1013 atomic regions from SNP 69344 to 69944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,822 DEBUG Processing 245/469 atomic regions from SNP 73293 to 73893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:39,943 DEBUG Processing 322/881 atomic regions from SNP 96441 to 97041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,024 DEBUG Processing 71/642 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,099 DEBUG Processing 309/847 atomic regions from SNP 92596 to 93196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,105 DEBUG Processing 225/1129 atomic regions from SNP 67307 to 67907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,125 DEBUG Processing 233/1013 atomic regions from SNP 69644 to 70244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,131 DEBUG Processing 246/469 atomic regions from SNP 73593 to 74193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:40,246 DEBUG Processing 323/881 atomic regions from SNP 96741 to 97341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,339 DEBUG Processing 72/642 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,407 DEBUG Processing 310/847 atomic regions from SNP 92896 to 93496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,440 DEBUG Processing 247/469 atomic regions from SNP 73893 to 74493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:40,447 DEBUG Processing 226/1129 atomic regions from SNP 67607 to 68207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,455 DEBUG Processing 234/1013 atomic regions from SNP 69944 to 70544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,545 DEBUG Processing 324/881 atomic regions from SNP 97041 to 97641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,657 DEBUG Processing 73/642 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,713 DEBUG Processing 311/847 atomic regions from SNP 93196 to 93796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,751 DEBUG Processing 248/469 atomic regions from SNP 74193 to 74793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:40,783 DEBUG Processing 235/1013 atomic regions from SNP 70244 to 70844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,789 DEBUG Processing 227/1129 atomic regions from SNP 67907 to 68507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,846 DEBUG Processing 325/881 atomic regions from SNP 97341 to 97941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,972 DEBUG Processing 74/642 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,015 DEBUG Processing 312/847 atomic regions from SNP 93496 to 94096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,058 DEBUG Processing 249/469 atomic regions from SNP 74493 to 75093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:41,112 DEBUG Processing 236/1013 atomic regions from SNP 70544 to 71144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,129 DEBUG Processing 228/1129 atomic regions from SNP 68207 to 68807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,147 DEBUG Processing 326/881 atomic regions from SNP 97641 to 98241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,320 DEBUG Processing 75/642 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,365 DEBUG Processing 313/847 atomic regions from SNP 93796 to 94396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,435 DEBUG Processing 250/469 atomic regions from SNP 74793 to 75393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:41,572 DEBUG Processing 237/1013 atomic regions from SNP 70844 to 71444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,573 DEBUG Processing 327/881 atomic regions from SNP 97941 to 98541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,595 DEBUG Processing 229/1129 atomic regions from SNP 68507 to 69107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,788 DEBUG Processing 76/642 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,817 DEBUG Processing 314/847 atomic regions from SNP 94096 to 94696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,885 DEBUG Processing 251/469 atomic regions from SNP 75093 to 75693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:42,041 DEBUG Processing 328/881 atomic regions from SNP 98241 to 98841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,093 DEBUG Processing 238/1013 atomic regions from SNP 71144 to 71744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,098 DEBUG Processing 230/1129 atomic regions from SNP 68807 to 69407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,253 DEBUG Processing 77/642 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,269 DEBUG Processing 315/847 atomic regions from SNP 94396 to 94996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,323 DEBUG Processing 252/469 atomic regions from SNP 75393 to 75993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:42,499 DEBUG Processing 329/881 atomic regions from SNP 98541 to 99141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,595 DEBUG Processing 231/1129 atomic regions from SNP 69107 to 69707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,607 DEBUG Processing 239/1013 atomic regions from SNP 71444 to 72044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,724 DEBUG Processing 316/847 atomic regions from SNP 94696 to 95296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,725 DEBUG Processing 78/642 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,764 DEBUG Processing 253/469 atomic regions from SNP 75693 to 76293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:42,951 DEBUG Processing 330/881 atomic regions from SNP 98841 to 99441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,094 DEBUG Processing 232/1129 atomic regions from SNP 69407 to 70007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,109 DEBUG Processing 240/1013 atomic regions from SNP 71744 to 72344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,185 DEBUG Processing 317/847 atomic regions from SNP 94996 to 95596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,193 DEBUG Processing 79/642 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,203 DEBUG Processing 254/469 atomic regions from SNP 75993 to 76593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:43,404 DEBUG Processing 331/881 atomic regions from SNP 99141 to 99741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,596 DEBUG Processing 233/1129 atomic regions from SNP 69707 to 70307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,622 DEBUG Processing 241/1013 atomic regions from SNP 72044 to 72644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,647 DEBUG Processing 255/469 atomic regions from SNP 76293 to 76893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:43,649 DEBUG Processing 318/847 atomic regions from SNP 95296 to 95896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,657 DEBUG Processing 80/642 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,861 DEBUG Processing 332/881 atomic regions from SNP 99441 to 100041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,101 DEBUG Processing 256/469 atomic regions from SNP 76593 to 77193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:44,110 DEBUG Processing 234/1129 atomic regions from SNP 70007 to 70607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,123 DEBUG Processing 81/642 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,124 DEBUG Processing 319/847 atomic regions from SNP 95596 to 96196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,146 DEBUG Processing 242/1013 atomic regions from SNP 72344 to 72944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,318 DEBUG Processing 333/881 atomic regions from SNP 99741 to 100341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,498 DEBUG Processing 257/469 atomic regions from SNP 76893 to 77493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:44,515 DEBUG Processing 320/847 atomic regions from SNP 95896 to 96496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,522 DEBUG Processing 82/642 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,538 DEBUG Processing 235/1129 atomic regions from SNP 70307 to 70907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,552 DEBUG Processing 243/1013 atomic regions from SNP 72644 to 73244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,628 DEBUG Processing 334/881 atomic regions from SNP 100041 to 100641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,811 DEBUG Processing 258/469 atomic regions from SNP 77193 to 77793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:44,825 DEBUG Processing 321/847 atomic regions from SNP 96196 to 96796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,856 DEBUG Processing 83/642 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,881 DEBUG Processing 244/1013 atomic regions from SNP 72944 to 73544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,883 DEBUG Processing 236/1129 atomic regions from SNP 70607 to 71207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,927 DEBUG Processing 335/881 atomic regions from SNP 100341 to 100941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,122 DEBUG Processing 259/469 atomic regions from SNP 77493 to 78093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:45,133 DEBUG Processing 322/847 atomic regions from SNP 96496 to 97096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,181 DEBUG Processing 84/642 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,210 DEBUG Processing 245/1013 atomic regions from SNP 73244 to 73844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,228 DEBUG Processing 237/1129 atomic regions from SNP 70907 to 71507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,230 DEBUG Processing 336/881 atomic regions from SNP 100641 to 101241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,430 DEBUG Processing 260/469 atomic regions from SNP 77793 to 78393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:45,438 DEBUG Processing 323/847 atomic regions from SNP 96796 to 97396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,500 DEBUG Processing 85/642 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,536 DEBUG Processing 337/881 atomic regions from SNP 100941 to 101541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,539 DEBUG Processing 246/1013 atomic regions from SNP 73544 to 74144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,593 DEBUG Processing 238/1129 atomic regions from SNP 71207 to 71807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,738 DEBUG Processing 261/469 atomic regions from SNP 78093 to 78693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:45,743 DEBUG Processing 324/847 atomic regions from SNP 97096 to 97696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,820 DEBUG Processing 86/642 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,845 DEBUG Processing 338/881 atomic regions from SNP 101241 to 101841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,867 DEBUG Processing 247/1013 atomic regions from SNP 73844 to 74444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,929 DEBUG Processing 239/1129 atomic regions from SNP 71507 to 72107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,044 DEBUG Processing 325/847 atomic regions from SNP 97396 to 97996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,046 DEBUG Processing 262/469 atomic regions from SNP 78393 to 78993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:46,140 DEBUG Processing 87/642 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,151 DEBUG Processing 339/881 atomic regions from SNP 101541 to 102141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,196 DEBUG Processing 248/1013 atomic regions from SNP 74144 to 74744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,266 DEBUG Processing 240/1129 atomic regions from SNP 71807 to 72407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,346 DEBUG Processing 326/847 atomic regions from SNP 97696 to 98296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,352 DEBUG Processing 263/469 atomic regions from SNP 78693 to 79293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:46,459 DEBUG Processing 88/642 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,460 DEBUG Processing 340/881 atomic regions from SNP 101841 to 102441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,526 DEBUG Processing 249/1013 atomic regions from SNP 74444 to 75044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,603 DEBUG Processing 241/1129 atomic regions from SNP 72107 to 72707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,648 DEBUG Processing 327/847 atomic regions from SNP 97996 to 98596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,658 DEBUG Processing 264/469 atomic regions from SNP 78993 to 79593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:46,766 DEBUG Processing 341/881 atomic regions from SNP 102141 to 102741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,778 DEBUG Processing 89/642 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,875 DEBUG Processing 250/1013 atomic regions from SNP 74744 to 75344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,940 DEBUG Processing 242/1129 atomic regions from SNP 72407 to 73007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,951 DEBUG Processing 328/847 atomic regions from SNP 98296 to 98896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,966 DEBUG Processing 265/469 atomic regions from SNP 79293 to 79893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:47,068 DEBUG Processing 342/881 atomic regions from SNP 102441 to 103041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,122 DEBUG Processing 90/642 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,201 DEBUG Processing 251/1013 atomic regions from SNP 75044 to 75644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,256 DEBUG Processing 329/847 atomic regions from SNP 98596 to 99196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,273 DEBUG Processing 266/469 atomic regions from SNP 79593 to 80193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:47,278 DEBUG Processing 243/1129 atomic regions from SNP 72707 to 73307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,370 DEBUG Processing 343/881 atomic regions from SNP 102741 to 103341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,452 DEBUG Processing 91/642 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,527 DEBUG Processing 252/1013 atomic regions from SNP 75344 to 75944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,562 DEBUG Processing 330/847 atomic regions from SNP 98896 to 99496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,586 DEBUG Processing 267/469 atomic regions from SNP 79893 to 80493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:47,619 DEBUG Processing 244/1129 atomic regions from SNP 73007 to 73607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,680 DEBUG Processing 344/881 atomic regions from SNP 103041 to 103641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,765 DEBUG Processing 92/642 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,853 DEBUG Processing 253/1013 atomic regions from SNP 75644 to 76244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,867 DEBUG Processing 331/847 atomic regions from SNP 99196 to 99796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,897 DEBUG Processing 268/469 atomic regions from SNP 80193 to 80793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:47,959 DEBUG Processing 245/1129 atomic regions from SNP 73307 to 73907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,011 DEBUG Processing 345/881 atomic regions from SNP 103341 to 103941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,080 DEBUG Processing 93/642 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,172 DEBUG Processing 332/847 atomic regions from SNP 99496 to 100096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,178 DEBUG Processing 254/1013 atomic regions from SNP 75944 to 76544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,204 DEBUG Processing 269/469 atomic regions from SNP 80493 to 81093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:48,301 DEBUG Processing 246/1129 atomic regions from SNP 73607 to 74207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,311 DEBUG Processing 346/881 atomic regions from SNP 103641 to 104241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,395 DEBUG Processing 94/642 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,477 DEBUG Processing 333/847 atomic regions from SNP 99796 to 100396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,505 DEBUG Processing 255/1013 atomic regions from SNP 76244 to 76844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,514 DEBUG Processing 270/469 atomic regions from SNP 80793 to 81393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:48,618 DEBUG Processing 347/881 atomic regions from SNP 103941 to 104541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,649 DEBUG Processing 247/1129 atomic regions from SNP 73907 to 74507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,713 DEBUG Processing 95/642 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,782 DEBUG Processing 334/847 atomic regions from SNP 100096 to 100696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,822 DEBUG Processing 271/469 atomic regions from SNP 81093 to 81693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:48,832 DEBUG Processing 256/1013 atomic regions from SNP 76544 to 77144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,922 DEBUG Processing 348/881 atomic regions from SNP 104241 to 104841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,986 DEBUG Processing 248/1129 atomic regions from SNP 74207 to 74807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,029 DEBUG Processing 96/642 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,085 DEBUG Processing 335/847 atomic regions from SNP 100396 to 100996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,130 DEBUG Processing 272/469 atomic regions from SNP 81393 to 81993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:49,158 DEBUG Processing 257/1013 atomic regions from SNP 76844 to 77444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,225 DEBUG Processing 349/881 atomic regions from SNP 104541 to 105141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,321 DEBUG Processing 249/1129 atomic regions from SNP 74507 to 75107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,362 DEBUG Processing 97/642 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,386 DEBUG Processing 336/847 atomic regions from SNP 100696 to 101296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,437 DEBUG Processing 273/469 atomic regions from SNP 81693 to 82293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:49,483 DEBUG Processing 258/1013 atomic regions from SNP 77144 to 77744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,530 DEBUG Processing 350/881 atomic regions from SNP 104841 to 105441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,658 DEBUG Processing 250/1129 atomic regions from SNP 74807 to 75407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,688 DEBUG Processing 337/847 atomic regions from SNP 100996 to 101596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,704 DEBUG Processing 98/642 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,745 DEBUG Processing 274/469 atomic regions from SNP 81993 to 82593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:49,808 DEBUG Processing 259/1013 atomic regions from SNP 77444 to 78044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,830 DEBUG Processing 351/881 atomic regions from SNP 105141 to 105741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,992 DEBUG Processing 338/847 atomic regions from SNP 101296 to 101896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,993 DEBUG Processing 251/1129 atomic regions from SNP 75107 to 75707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,044 DEBUG Processing 99/642 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,054 DEBUG Processing 275/469 atomic regions from SNP 82293 to 82893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:50,132 DEBUG Processing 260/1013 atomic regions from SNP 77744 to 78344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,133 DEBUG Processing 352/881 atomic regions from SNP 105441 to 106041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,297 DEBUG Processing 339/847 atomic regions from SNP 101596 to 102196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,353 DEBUG Processing 252/1129 atomic regions from SNP 75407 to 76007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,367 DEBUG Processing 276/469 atomic regions from SNP 82593 to 83193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:50,372 DEBUG Processing 100/642 atomic regions from SNP 29799 to 30399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,441 DEBUG Processing 353/881 atomic regions from SNP 105741 to 106341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,459 DEBUG Processing 261/1013 atomic regions from SNP 78044 to 78644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,597 DEBUG Processing 340/847 atomic regions from SNP 101896 to 102496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,681 DEBUG Processing 277/469 atomic regions from SNP 82893 to 83493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:50,710 DEBUG Processing 101/642 atomic regions from SNP 30099 to 30699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,720 DEBUG Processing 253/1129 atomic regions from SNP 75707 to 76307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,763 DEBUG Processing 354/881 atomic regions from SNP 106041 to 106641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,784 DEBUG Processing 262/1013 atomic regions from SNP 78344 to 78944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,894 DEBUG Processing 341/847 atomic regions from SNP 102196 to 102796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,990 DEBUG Processing 278/469 atomic regions from SNP 83193 to 83793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:51,048 DEBUG Processing 102/642 atomic regions from SNP 30399 to 30999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,062 DEBUG Processing 254/1129 atomic regions from SNP 76007 to 76607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,069 DEBUG Processing 355/881 atomic regions from SNP 106341 to 106941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,110 DEBUG Processing 263/1013 atomic regions from SNP 78644 to 79244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,202 DEBUG Processing 342/847 atomic regions from SNP 102496 to 103096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,300 DEBUG Processing 279/469 atomic regions from SNP 83493 to 84093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:51,376 DEBUG Processing 356/881 atomic regions from SNP 106641 to 107241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,383 DEBUG Processing 103/642 atomic regions from SNP 30699 to 31299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,404 DEBUG Processing 255/1129 atomic regions from SNP 76307 to 76907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,437 DEBUG Processing 264/1013 atomic regions from SNP 78944 to 79544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,506 DEBUG Processing 343/847 atomic regions from SNP 102796 to 103396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,605 DEBUG Processing 280/469 atomic regions from SNP 83793 to 84393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:51,684 DEBUG Processing 357/881 atomic regions from SNP 106941 to 107541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,701 DEBUG Processing 104/642 atomic regions from SNP 30999 to 31599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,743 DEBUG Processing 256/1129 atomic regions from SNP 76607 to 77207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,763 DEBUG Processing 265/1013 atomic regions from SNP 79244 to 79844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,807 DEBUG Processing 344/847 atomic regions from SNP 103096 to 103696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,908 DEBUG Processing 281/469 atomic regions from SNP 84093 to 84693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:51,987 DEBUG Processing 358/881 atomic regions from SNP 107241 to 107841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,019 DEBUG Processing 105/642 atomic regions from SNP 31299 to 31899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,086 DEBUG Processing 257/1129 atomic regions from SNP 76907 to 77507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,092 DEBUG Processing 266/1013 atomic regions from SNP 79544 to 80144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,107 DEBUG Processing 345/847 atomic regions from SNP 103396 to 103996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,211 DEBUG Processing 282/469 atomic regions from SNP 84393 to 84993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:52,288 DEBUG Processing 359/881 atomic regions from SNP 107541 to 108141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,338 DEBUG Processing 106/642 atomic regions from SNP 31599 to 32199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,411 DEBUG Processing 346/847 atomic regions from SNP 103696 to 104296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,421 DEBUG Processing 267/1013 atomic regions from SNP 79844 to 80444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,427 DEBUG Processing 258/1129 atomic regions from SNP 77207 to 77807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,515 DEBUG Processing 283/469 atomic regions from SNP 84693 to 85293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:52,588 DEBUG Processing 360/881 atomic regions from SNP 107841 to 108441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,656 DEBUG Processing 107/642 atomic regions from SNP 31899 to 32499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,733 DEBUG Processing 347/847 atomic regions from SNP 103996 to 104596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,753 DEBUG Processing 268/1013 atomic regions from SNP 80144 to 80744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,768 DEBUG Processing 259/1129 atomic regions from SNP 77507 to 78107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,820 DEBUG Processing 284/469 atomic regions from SNP 84993 to 85593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:52,891 DEBUG Processing 361/881 atomic regions from SNP 108141 to 108741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,999 DEBUG Processing 108/642 atomic regions from SNP 32199 to 32799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,052 DEBUG Processing 348/847 atomic regions from SNP 104296 to 104896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,082 DEBUG Processing 269/1013 atomic regions from SNP 80444 to 81044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,107 DEBUG Processing 260/1129 atomic regions from SNP 77807 to 78407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,128 DEBUG Processing 285/469 atomic regions from SNP 85293 to 85893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:53,199 DEBUG Processing 362/881 atomic regions from SNP 108441 to 109041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,335 DEBUG Processing 109/642 atomic regions from SNP 32499 to 33099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,379 DEBUG Processing 349/847 atomic regions from SNP 104596 to 105196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,411 DEBUG Processing 270/1013 atomic regions from SNP 80744 to 81344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,437 DEBUG Processing 286/469 atomic regions from SNP 85593 to 86193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:53,448 DEBUG Processing 261/1129 atomic regions from SNP 78107 to 78707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,525 DEBUG Processing 363/881 atomic regions from SNP 108741 to 109341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,651 DEBUG Processing 110/642 atomic regions from SNP 32799 to 33399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,684 DEBUG Processing 350/847 atomic regions from SNP 104896 to 105496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,742 DEBUG Processing 271/1013 atomic regions from SNP 81044 to 81644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,748 DEBUG Processing 287/469 atomic regions from SNP 85893 to 86493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:53,788 DEBUG Processing 262/1129 atomic regions from SNP 78407 to 79007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,844 DEBUG Processing 364/881 atomic regions from SNP 109041 to 109641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,965 DEBUG Processing 111/642 atomic regions from SNP 33099 to 33699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,986 DEBUG Processing 351/847 atomic regions from SNP 105196 to 105796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,058 DEBUG Processing 288/469 atomic regions from SNP 86193 to 86793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:54,077 DEBUG Processing 272/1013 atomic regions from SNP 81344 to 81944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,130 DEBUG Processing 263/1129 atomic regions from SNP 78707 to 79307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,166 DEBUG Processing 365/881 atomic regions from SNP 109341 to 109941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,280 DEBUG Processing 112/642 atomic regions from SNP 33399 to 33999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,289 DEBUG Processing 352/847 atomic regions from SNP 105496 to 106096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,365 DEBUG Processing 289/469 atomic regions from SNP 86493 to 87093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:54,409 DEBUG Processing 273/1013 atomic regions from SNP 81644 to 82244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,466 DEBUG Processing 366/881 atomic regions from SNP 109641 to 110241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,469 DEBUG Processing 264/1129 atomic regions from SNP 79007 to 79607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,592 DEBUG Processing 353/847 atomic regions from SNP 105796 to 106396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,597 DEBUG Processing 113/642 atomic regions from SNP 33699 to 34299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,674 DEBUG Processing 290/469 atomic regions from SNP 86793 to 87393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:54,740 DEBUG Processing 274/1013 atomic regions from SNP 81944 to 82544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,770 DEBUG Processing 367/881 atomic regions from SNP 109941 to 110541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,806 DEBUG Processing 265/1129 atomic regions from SNP 79307 to 79907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,895 DEBUG Processing 354/847 atomic regions from SNP 106096 to 106696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,913 DEBUG Processing 114/642 atomic regions from SNP 33999 to 34599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,980 DEBUG Processing 291/469 atomic regions from SNP 87093 to 87693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:55,069 DEBUG Processing 275/1013 atomic regions from SNP 82244 to 82844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,076 DEBUG Processing 368/881 atomic regions from SNP 110241 to 110841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,142 DEBUG Processing 266/1129 atomic regions from SNP 79607 to 80207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,196 DEBUG Processing 355/847 atomic regions from SNP 106396 to 106996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,229 DEBUG Processing 115/642 atomic regions from SNP 34299 to 34899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,286 DEBUG Processing 292/469 atomic regions from SNP 87393 to 87993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:55,381 DEBUG Processing 369/881 atomic regions from SNP 110541 to 111141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,398 DEBUG Processing 276/1013 atomic regions from SNP 82544 to 83144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,482 DEBUG Processing 267/1129 atomic regions from SNP 79907 to 80507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,497 DEBUG Processing 356/847 atomic regions from SNP 106696 to 107296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,546 DEBUG Processing 116/642 atomic regions from SNP 34599 to 35199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,588 DEBUG Processing 293/469 atomic regions from SNP 87693 to 88293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:55,684 DEBUG Processing 370/881 atomic regions from SNP 110841 to 111441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,728 DEBUG Processing 277/1013 atomic regions from SNP 82844 to 83444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,799 DEBUG Processing 357/847 atomic regions from SNP 106996 to 107596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,819 DEBUG Processing 268/1129 atomic regions from SNP 80207 to 80807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,862 DEBUG Processing 117/642 atomic regions from SNP 34899 to 35499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,894 DEBUG Processing 294/469 atomic regions from SNP 87993 to 88593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:55,985 DEBUG Processing 371/881 atomic regions from SNP 111141 to 111741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,056 DEBUG Processing 278/1013 atomic regions from SNP 83144 to 83744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,103 DEBUG Processing 358/847 atomic regions from SNP 107296 to 107896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,158 DEBUG Processing 269/1129 atomic regions from SNP 80507 to 81107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,180 DEBUG Processing 118/642 atomic regions from SNP 35199 to 35799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,202 DEBUG Processing 295/469 atomic regions from SNP 88293 to 88893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:56,285 DEBUG Processing 372/881 atomic regions from SNP 111441 to 112041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,383 DEBUG Processing 279/1013 atomic regions from SNP 83444 to 84044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,417 DEBUG Processing 359/847 atomic regions from SNP 107596 to 108196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,494 DEBUG Processing 270/1129 atomic regions from SNP 80807 to 81407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,497 DEBUG Processing 119/642 atomic regions from SNP 35499 to 36099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,510 DEBUG Processing 296/469 atomic regions from SNP 88593 to 89193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:56,585 DEBUG Processing 373/881 atomic regions from SNP 111741 to 112341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,706 DEBUG Processing 280/1013 atomic regions from SNP 83744 to 84344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,717 DEBUG Processing 360/847 atomic regions from SNP 107896 to 108496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,822 DEBUG Processing 297/469 atomic regions from SNP 88893 to 89493 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:56,828 DEBUG Processing 120/642 atomic regions from SNP 35799 to 36399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,836 DEBUG Processing 271/1129 atomic regions from SNP 81107 to 81707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,887 DEBUG Processing 374/881 atomic regions from SNP 112041 to 112641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,016 DEBUG Processing 361/847 atomic regions from SNP 108196 to 108796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,030 DEBUG Processing 281/1013 atomic regions from SNP 84044 to 84644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,157 DEBUG Processing 298/469 atomic regions from SNP 89193 to 89793 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:57,159 DEBUG Processing 121/642 atomic regions from SNP 36099 to 36699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,181 DEBUG Processing 272/1129 atomic regions from SNP 81407 to 82007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,191 DEBUG Processing 375/881 atomic regions from SNP 112341 to 112941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,341 DEBUG Processing 362/847 atomic regions from SNP 108496 to 109096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,356 DEBUG Processing 282/1013 atomic regions from SNP 84344 to 84944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,482 DEBUG Processing 299/469 atomic regions from SNP 89493 to 90093 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:57,483 DEBUG Processing 122/642 atomic regions from SNP 36399 to 36999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,498 DEBUG Processing 376/881 atomic regions from SNP 112641 to 113241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,522 DEBUG Processing 273/1129 atomic regions from SNP 81707 to 82307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,647 DEBUG Processing 363/847 atomic regions from SNP 108796 to 109396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,681 DEBUG Processing 283/1013 atomic regions from SNP 84644 to 85244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,810 DEBUG Processing 377/881 atomic regions from SNP 112941 to 113541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,811 DEBUG Processing 300/469 atomic regions from SNP 89793 to 90393 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:57,814 DEBUG Processing 123/642 atomic regions from SNP 36699 to 37299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,861 DEBUG Processing 274/1129 atomic regions from SNP 82007 to 82607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,953 DEBUG Processing 364/847 atomic regions from SNP 109096 to 109696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,005 DEBUG Processing 284/1013 atomic regions from SNP 84944 to 85544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,118 DEBUG Processing 378/881 atomic regions from SNP 113241 to 113841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,141 DEBUG Processing 124/642 atomic regions from SNP 36999 to 37599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,151 DEBUG Processing 301/469 atomic regions from SNP 90093 to 90693 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:58,200 DEBUG Processing 275/1129 atomic regions from SNP 82307 to 82907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,254 DEBUG Processing 365/847 atomic regions from SNP 109396 to 109996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,329 DEBUG Processing 285/1013 atomic regions from SNP 85244 to 85844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,421 DEBUG Processing 379/881 atomic regions from SNP 113541 to 114141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,462 DEBUG Processing 302/469 atomic regions from SNP 90393 to 90993 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:58,466 DEBUG Processing 125/642 atomic regions from SNP 37299 to 37899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,537 DEBUG Processing 276/1129 atomic regions from SNP 82607 to 83207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,554 DEBUG Processing 366/847 atomic regions from SNP 109696 to 110296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,650 DEBUG Processing 286/1013 atomic regions from SNP 85544 to 86144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,718 DEBUG Processing 380/881 atomic regions from SNP 113841 to 114441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,772 DEBUG Processing 303/469 atomic regions from SNP 90693 to 91293 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:58,790 DEBUG Processing 126/642 atomic regions from SNP 37599 to 38199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,857 DEBUG Processing 367/847 atomic regions from SNP 109996 to 110596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,876 DEBUG Processing 277/1129 atomic regions from SNP 82907 to 83507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,976 DEBUG Processing 287/1013 atomic regions from SNP 85844 to 86444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,017 DEBUG Processing 381/881 atomic regions from SNP 114141 to 114741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,082 DEBUG Processing 304/469 atomic regions from SNP 90993 to 91593 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:59,111 DEBUG Processing 127/642 atomic regions from SNP 37899 to 38499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,160 DEBUG Processing 368/847 atomic regions from SNP 110296 to 110896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,212 DEBUG Processing 278/1129 atomic regions from SNP 83207 to 83807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,299 DEBUG Processing 288/1013 atomic regions from SNP 86144 to 86744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,317 DEBUG Processing 382/881 atomic regions from SNP 114441 to 115041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,389 DEBUG Processing 305/469 atomic regions from SNP 91293 to 91893 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:59,433 DEBUG Processing 128/642 atomic regions from SNP 38199 to 38799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,461 DEBUG Processing 369/847 atomic regions from SNP 110596 to 111196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,548 DEBUG Processing 279/1129 atomic regions from SNP 83507 to 84107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,617 DEBUG Processing 383/881 atomic regions from SNP 114741 to 115341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,623 DEBUG Processing 289/1013 atomic regions from SNP 86444 to 87044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,699 DEBUG Processing 306/469 atomic regions from SNP 91593 to 92193 for chrX (subchromosome 3 of 4). 2025-01-31 09:44:59,752 DEBUG Processing 129/642 atomic regions from SNP 38499 to 39099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,764 DEBUG Processing 370/847 atomic regions from SNP 110896 to 111496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,886 DEBUG Processing 280/1129 atomic regions from SNP 83807 to 84407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,919 DEBUG Processing 384/881 atomic regions from SNP 115041 to 115641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,946 DEBUG Processing 290/1013 atomic regions from SNP 86744 to 87344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,008 DEBUG Processing 307/469 atomic regions from SNP 91893 to 92493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:00,069 DEBUG Processing 371/847 atomic regions from SNP 111196 to 111796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,072 DEBUG Processing 130/642 atomic regions from SNP 38799 to 39399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,223 DEBUG Processing 385/881 atomic regions from SNP 115341 to 115941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,228 DEBUG Processing 281/1129 atomic regions from SNP 84107 to 84707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,272 DEBUG Processing 291/1013 atomic regions from SNP 87044 to 87644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,318 DEBUG Processing 308/469 atomic regions from SNP 92193 to 92793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:00,372 DEBUG Processing 372/847 atomic regions from SNP 111496 to 112096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,390 DEBUG Processing 131/642 atomic regions from SNP 39099 to 39699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,528 DEBUG Processing 386/881 atomic regions from SNP 115641 to 116241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,596 DEBUG Processing 282/1129 atomic regions from SNP 84407 to 85007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,597 DEBUG Processing 292/1013 atomic regions from SNP 87344 to 87944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,626 DEBUG Processing 309/469 atomic regions from SNP 92493 to 93093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:00,679 DEBUG Processing 373/847 atomic regions from SNP 111796 to 112396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,709 DEBUG Processing 132/642 atomic regions from SNP 39399 to 39999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,829 DEBUG Processing 387/881 atomic regions from SNP 115941 to 116541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,938 DEBUG Processing 310/469 atomic regions from SNP 92793 to 93393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:00,941 DEBUG Processing 293/1013 atomic regions from SNP 87644 to 88244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,953 DEBUG Processing 283/1129 atomic regions from SNP 84707 to 85307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,986 DEBUG Processing 374/847 atomic regions from SNP 112096 to 112696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,028 DEBUG Processing 133/642 atomic regions from SNP 39699 to 40299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,125 DEBUG Processing 388/881 atomic regions from SNP 116241 to 116841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,260 DEBUG Processing 311/469 atomic regions from SNP 93093 to 93693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:01,280 DEBUG Processing 294/1013 atomic regions from SNP 87944 to 88544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,293 DEBUG Processing 375/847 atomic regions from SNP 112396 to 112996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,304 DEBUG Processing 284/1129 atomic regions from SNP 85007 to 85607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,349 DEBUG Processing 134/642 atomic regions from SNP 39999 to 40599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,427 DEBUG Processing 389/881 atomic regions from SNP 116541 to 117141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,589 DEBUG Processing 312/469 atomic regions from SNP 93393 to 93993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:01,599 DEBUG Processing 376/847 atomic regions from SNP 112696 to 113296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,609 DEBUG Processing 295/1013 atomic regions from SNP 88244 to 88844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,667 DEBUG Processing 285/1129 atomic regions from SNP 85307 to 85907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,668 DEBUG Processing 135/642 atomic regions from SNP 40299 to 40899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,729 DEBUG Processing 390/881 atomic regions from SNP 116841 to 117441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,906 DEBUG Processing 377/847 atomic regions from SNP 112996 to 113596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,930 DEBUG Processing 313/469 atomic regions from SNP 93693 to 94293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:01,936 DEBUG Processing 296/1013 atomic regions from SNP 88544 to 89144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,989 DEBUG Processing 136/642 atomic regions from SNP 40599 to 41199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,031 DEBUG Processing 391/881 atomic regions from SNP 117141 to 117741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,041 DEBUG Processing 286/1129 atomic regions from SNP 85607 to 86207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,208 DEBUG Processing 378/847 atomic regions from SNP 113296 to 113896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,257 DEBUG Processing 314/469 atomic regions from SNP 93993 to 94593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:02,263 DEBUG Processing 297/1013 atomic regions from SNP 88844 to 89444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,309 DEBUG Processing 137/642 atomic regions from SNP 40899 to 41499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,336 DEBUG Processing 392/881 atomic regions from SNP 117441 to 118041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,384 DEBUG Processing 287/1129 atomic regions from SNP 85907 to 86507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,507 DEBUG Processing 379/847 atomic regions from SNP 113596 to 114196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,572 DEBUG Processing 315/469 atomic regions from SNP 94293 to 94893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:02,591 DEBUG Processing 298/1013 atomic regions from SNP 89144 to 89744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,626 DEBUG Processing 138/642 atomic regions from SNP 41199 to 41799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,645 DEBUG Processing 393/881 atomic regions from SNP 117741 to 118341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,720 DEBUG Processing 288/1129 atomic regions from SNP 86207 to 86807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,807 DEBUG Processing 380/847 atomic regions from SNP 113896 to 114496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,890 DEBUG Processing 316/469 atomic regions from SNP 94593 to 95193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:02,918 DEBUG Processing 299/1013 atomic regions from SNP 89444 to 90044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,949 DEBUG Processing 139/642 atomic regions from SNP 41499 to 42099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,952 DEBUG Processing 394/881 atomic regions from SNP 118041 to 118641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,054 DEBUG Processing 289/1129 atomic regions from SNP 86507 to 87107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,106 DEBUG Processing 381/847 atomic regions from SNP 114196 to 114796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,204 DEBUG Processing 317/469 atomic regions from SNP 94893 to 95493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:03,249 DEBUG Processing 300/1013 atomic regions from SNP 89744 to 90344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,258 DEBUG Processing 395/881 atomic regions from SNP 118341 to 118941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,267 DEBUG Processing 140/642 atomic regions from SNP 41799 to 42399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,391 DEBUG Processing 290/1129 atomic regions from SNP 86807 to 87407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,408 DEBUG Processing 382/847 atomic regions from SNP 114496 to 115096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,518 DEBUG Processing 318/469 atomic regions from SNP 95193 to 95793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:03,564 DEBUG Processing 396/881 atomic regions from SNP 118641 to 119241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,578 DEBUG Processing 301/1013 atomic regions from SNP 90044 to 90644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,585 DEBUG Processing 141/642 atomic regions from SNP 42099 to 42699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,709 DEBUG Processing 383/847 atomic regions from SNP 114796 to 115396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,728 DEBUG Processing 291/1129 atomic regions from SNP 87107 to 87707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,832 DEBUG Processing 319/469 atomic regions from SNP 95493 to 96093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:03,872 DEBUG Processing 397/881 atomic regions from SNP 118941 to 119541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,902 DEBUG Processing 142/642 atomic regions from SNP 42399 to 42999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,906 DEBUG Processing 302/1013 atomic regions from SNP 90344 to 90944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,012 DEBUG Processing 384/847 atomic regions from SNP 115096 to 115696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,066 DEBUG Processing 292/1129 atomic regions from SNP 87407 to 88007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,146 DEBUG Processing 320/469 atomic regions from SNP 95793 to 96393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:04,179 DEBUG Processing 398/881 atomic regions from SNP 119241 to 119841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,218 DEBUG Processing 143/642 atomic regions from SNP 42699 to 43299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,232 DEBUG Processing 303/1013 atomic regions from SNP 90644 to 91244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,314 DEBUG Processing 385/847 atomic regions from SNP 115396 to 115996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,404 DEBUG Processing 293/1129 atomic regions from SNP 87707 to 88307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,460 DEBUG Processing 321/469 atomic regions from SNP 96093 to 96693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:04,486 DEBUG Processing 399/881 atomic regions from SNP 119541 to 120141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,535 DEBUG Processing 144/642 atomic regions from SNP 42999 to 43599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,559 DEBUG Processing 304/1013 atomic regions from SNP 90944 to 91544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,617 DEBUG Processing 386/847 atomic regions from SNP 115696 to 116296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,739 DEBUG Processing 294/1129 atomic regions from SNP 88007 to 88607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,770 DEBUG Processing 322/469 atomic regions from SNP 96393 to 96993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:04,790 DEBUG Processing 400/881 atomic regions from SNP 119841 to 120441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,851 DEBUG Processing 145/642 atomic regions from SNP 43299 to 43899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,883 DEBUG Processing 305/1013 atomic regions from SNP 91244 to 91844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,921 DEBUG Processing 387/847 atomic regions from SNP 115996 to 116596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,077 DEBUG Processing 295/1129 atomic regions from SNP 88307 to 88907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,083 DEBUG Processing 323/469 atomic regions from SNP 96693 to 97293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:05,094 DEBUG Processing 401/881 atomic regions from SNP 120141 to 120741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,170 DEBUG Processing 146/642 atomic regions from SNP 43599 to 44199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,209 DEBUG Processing 306/1013 atomic regions from SNP 91544 to 92144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,226 DEBUG Processing 388/847 atomic regions from SNP 116296 to 116896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,396 DEBUG Processing 324/469 atomic regions from SNP 96993 to 97593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:05,402 DEBUG Processing 402/881 atomic regions from SNP 120441 to 121041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,415 DEBUG Processing 296/1129 atomic regions from SNP 88607 to 89207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,489 DEBUG Processing 147/642 atomic regions from SNP 43899 to 44499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,529 DEBUG Processing 389/847 atomic regions from SNP 116596 to 117196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,538 DEBUG Processing 307/1013 atomic regions from SNP 91844 to 92444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,709 DEBUG Processing 403/881 atomic regions from SNP 120741 to 121341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,709 DEBUG Processing 325/469 atomic regions from SNP 97293 to 97893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:05,754 DEBUG Processing 297/1129 atomic regions from SNP 88907 to 89507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,805 DEBUG Processing 148/642 atomic regions from SNP 44199 to 44799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,844 DEBUG Processing 390/847 atomic regions from SNP 116896 to 117496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,865 DEBUG Processing 308/1013 atomic regions from SNP 92144 to 92744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,013 DEBUG Processing 404/881 atomic regions from SNP 121041 to 121641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,020 DEBUG Processing 326/469 atomic regions from SNP 97593 to 98193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:06,094 DEBUG Processing 298/1129 atomic regions from SNP 89207 to 89807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,120 DEBUG Processing 149/642 atomic regions from SNP 44499 to 45099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,153 DEBUG Processing 391/847 atomic regions from SNP 117196 to 117796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,192 DEBUG Processing 309/1013 atomic regions from SNP 92444 to 93044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,317 DEBUG Processing 405/881 atomic regions from SNP 121341 to 121941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,331 DEBUG Processing 327/469 atomic regions from SNP 97893 to 98493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:06,438 DEBUG Processing 150/642 atomic regions from SNP 44799 to 45399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,453 DEBUG Processing 299/1129 atomic regions from SNP 89507 to 90107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,481 DEBUG Processing 392/847 atomic regions from SNP 117496 to 118096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,518 DEBUG Processing 310/1013 atomic regions from SNP 92744 to 93344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,620 DEBUG Processing 406/881 atomic regions from SNP 121641 to 122241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,641 DEBUG Processing 328/469 atomic regions from SNP 98193 to 98793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:06,756 DEBUG Processing 151/642 atomic regions from SNP 45099 to 45699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,809 DEBUG Processing 393/847 atomic regions from SNP 117796 to 118396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,831 DEBUG Processing 300/1129 atomic regions from SNP 89807 to 90407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,845 DEBUG Processing 311/1013 atomic regions from SNP 93044 to 93644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,920 DEBUG Processing 407/881 atomic regions from SNP 121941 to 122541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,950 DEBUG Processing 329/469 atomic regions from SNP 98493 to 99093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:07,075 DEBUG Processing 152/642 atomic regions from SNP 45399 to 45999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,116 DEBUG Processing 394/847 atomic regions from SNP 118096 to 118696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,172 DEBUG Processing 312/1013 atomic regions from SNP 93344 to 93944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,190 DEBUG Processing 301/1129 atomic regions from SNP 90107 to 90707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,221 DEBUG Processing 408/881 atomic regions from SNP 122241 to 122841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,260 DEBUG Processing 330/469 atomic regions from SNP 98793 to 99393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:07,391 DEBUG Processing 153/642 atomic regions from SNP 45699 to 46299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,422 DEBUG Processing 395/847 atomic regions from SNP 118396 to 118996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,500 DEBUG Processing 313/1013 atomic regions from SNP 93644 to 94244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,525 DEBUG Processing 409/881 atomic regions from SNP 122541 to 123141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,529 DEBUG Processing 302/1129 atomic regions from SNP 90407 to 91007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,568 DEBUG Processing 331/469 atomic regions from SNP 99093 to 99693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:07,703 DEBUG Processing 154/642 atomic regions from SNP 45999 to 46599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,726 DEBUG Processing 396/847 atomic regions from SNP 118696 to 119296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,826 DEBUG Processing 314/1013 atomic regions from SNP 93944 to 94544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,832 DEBUG Processing 410/881 atomic regions from SNP 122841 to 123441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,867 DEBUG Processing 303/1129 atomic regions from SNP 90707 to 91307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,878 DEBUG Processing 332/469 atomic regions from SNP 99393 to 99993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:08,016 DEBUG Processing 155/642 atomic regions from SNP 46299 to 46899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,054 DEBUG Processing 397/847 atomic regions from SNP 118996 to 119596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,140 DEBUG Processing 411/881 atomic regions from SNP 123141 to 123741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,153 DEBUG Processing 315/1013 atomic regions from SNP 94244 to 94844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,187 DEBUG Processing 333/469 atomic regions from SNP 99693 to 100293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:08,210 DEBUG Processing 304/1129 atomic regions from SNP 91007 to 91607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,333 DEBUG Processing 156/642 atomic regions from SNP 46599 to 47199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,368 DEBUG Processing 398/847 atomic regions from SNP 119296 to 119896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,446 DEBUG Processing 412/881 atomic regions from SNP 123441 to 124041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,480 DEBUG Processing 316/1013 atomic regions from SNP 94544 to 95144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,497 DEBUG Processing 334/469 atomic regions from SNP 99993 to 100593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:08,546 DEBUG Processing 305/1129 atomic regions from SNP 91307 to 91907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,648 DEBUG Processing 157/642 atomic regions from SNP 46899 to 47499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,668 DEBUG Processing 399/847 atomic regions from SNP 119596 to 120196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,750 DEBUG Processing 413/881 atomic regions from SNP 123741 to 124341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,807 DEBUG Processing 335/469 atomic regions from SNP 100293 to 100893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:08,837 DEBUG Processing 317/1013 atomic regions from SNP 94844 to 95444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,880 DEBUG Processing 306/1129 atomic regions from SNP 91607 to 92207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,963 DEBUG Processing 158/642 atomic regions from SNP 47199 to 47799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,969 DEBUG Processing 400/847 atomic regions from SNP 119896 to 120496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,054 DEBUG Processing 414/881 atomic regions from SNP 124041 to 124641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,117 DEBUG Processing 336/469 atomic regions from SNP 100593 to 101193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:09,186 DEBUG Processing 318/1013 atomic regions from SNP 95144 to 95744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,217 DEBUG Processing 307/1129 atomic regions from SNP 91907 to 92507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,276 DEBUG Processing 401/847 atomic regions from SNP 120196 to 120796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,279 DEBUG Processing 159/642 atomic regions from SNP 47499 to 48099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,355 DEBUG Processing 415/881 atomic regions from SNP 124341 to 124941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,428 DEBUG Processing 337/469 atomic regions from SNP 100893 to 101493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:09,515 DEBUG Processing 319/1013 atomic regions from SNP 95444 to 96044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,555 DEBUG Processing 308/1129 atomic regions from SNP 92207 to 92807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,582 DEBUG Processing 402/847 atomic regions from SNP 120496 to 121096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,594 DEBUG Processing 160/642 atomic regions from SNP 47799 to 48399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,656 DEBUG Processing 416/881 atomic regions from SNP 124641 to 125241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,736 DEBUG Processing 338/469 atomic regions from SNP 101193 to 101793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:09,838 DEBUG Processing 320/1013 atomic regions from SNP 95744 to 96344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,890 DEBUG Processing 403/847 atomic regions from SNP 120796 to 121396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,893 DEBUG Processing 309/1129 atomic regions from SNP 92507 to 93107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,911 DEBUG Processing 161/642 atomic regions from SNP 48099 to 48699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,957 DEBUG Processing 417/881 atomic regions from SNP 124941 to 125541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,047 DEBUG Processing 339/469 atomic regions from SNP 101493 to 102093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:10,162 DEBUG Processing 321/1013 atomic regions from SNP 96044 to 96644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,200 DEBUG Processing 404/847 atomic regions from SNP 121096 to 121696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,232 DEBUG Processing 162/642 atomic regions from SNP 48399 to 48999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,238 DEBUG Processing 310/1129 atomic regions from SNP 92807 to 93407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,264 DEBUG Processing 418/881 atomic regions from SNP 125241 to 125841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,358 DEBUG Processing 340/469 atomic regions from SNP 101793 to 102393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:10,486 DEBUG Processing 322/1013 atomic regions from SNP 96344 to 96944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,508 DEBUG Processing 405/847 atomic regions from SNP 121396 to 121996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,551 DEBUG Processing 163/642 atomic regions from SNP 48699 to 49299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,571 DEBUG Processing 419/881 atomic regions from SNP 125541 to 126141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,579 DEBUG Processing 311/1129 atomic regions from SNP 93107 to 93707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,669 DEBUG Processing 341/469 atomic regions from SNP 102093 to 102693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:10,812 DEBUG Processing 323/1013 atomic regions from SNP 96644 to 97244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,814 DEBUG Processing 406/847 atomic regions from SNP 121696 to 122296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,870 DEBUG Processing 164/642 atomic regions from SNP 48999 to 49599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,891 DEBUG Processing 420/881 atomic regions from SNP 125841 to 126441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,921 DEBUG Processing 312/1129 atomic regions from SNP 93407 to 94007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,976 DEBUG Processing 342/469 atomic regions from SNP 102393 to 102993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:11,120 DEBUG Processing 407/847 atomic regions from SNP 121996 to 122596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,140 DEBUG Processing 324/1013 atomic regions from SNP 96944 to 97544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,187 DEBUG Processing 165/642 atomic regions from SNP 49299 to 49899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,223 DEBUG Processing 421/881 atomic regions from SNP 126141 to 126741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,261 DEBUG Processing 313/1129 atomic regions from SNP 93707 to 94307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,282 DEBUG Processing 343/469 atomic regions from SNP 102693 to 103293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:11,425 DEBUG Processing 408/847 atomic regions from SNP 122296 to 122896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,467 DEBUG Processing 325/1013 atomic regions from SNP 97244 to 97844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,505 DEBUG Processing 166/642 atomic regions from SNP 49599 to 50199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,530 DEBUG Processing 422/881 atomic regions from SNP 126441 to 127041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,593 DEBUG Processing 344/469 atomic regions from SNP 102993 to 103593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:11,599 DEBUG Processing 314/1129 atomic regions from SNP 94007 to 94607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,729 DEBUG Processing 409/847 atomic regions from SNP 122596 to 123196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,794 DEBUG Processing 326/1013 atomic regions from SNP 97544 to 98144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,823 DEBUG Processing 167/642 atomic regions from SNP 49899 to 50499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,836 DEBUG Processing 423/881 atomic regions from SNP 126741 to 127341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,903 DEBUG Processing 345/469 atomic regions from SNP 103293 to 103893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:11,938 DEBUG Processing 315/1129 atomic regions from SNP 94307 to 94907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,031 DEBUG Processing 410/847 atomic regions from SNP 122896 to 123496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,119 DEBUG Processing 327/1013 atomic regions from SNP 97844 to 98444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,141 DEBUG Processing 168/642 atomic regions from SNP 50199 to 50799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,143 DEBUG Processing 424/881 atomic regions from SNP 127041 to 127641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,214 DEBUG Processing 346/469 atomic regions from SNP 103593 to 104193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:12,275 DEBUG Processing 316/1129 atomic regions from SNP 94607 to 95207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,331 DEBUG Processing 411/847 atomic regions from SNP 123196 to 123796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,443 DEBUG Processing 328/1013 atomic regions from SNP 98144 to 98744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,451 DEBUG Processing 425/881 atomic regions from SNP 127341 to 127941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,460 DEBUG Processing 169/642 atomic regions from SNP 50499 to 51099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,523 DEBUG Processing 347/469 atomic regions from SNP 103893 to 104493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:12,613 DEBUG Processing 317/1129 atomic regions from SNP 94907 to 95507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,632 DEBUG Processing 412/847 atomic regions from SNP 123496 to 124096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,760 DEBUG Processing 426/881 atomic regions from SNP 127641 to 128241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,771 DEBUG Processing 329/1013 atomic regions from SNP 98444 to 99044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,780 DEBUG Processing 170/642 atomic regions from SNP 50799 to 51399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,833 DEBUG Processing 348/469 atomic regions from SNP 104193 to 104793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:12,936 DEBUG Processing 413/847 atomic regions from SNP 123796 to 124396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,955 DEBUG Processing 318/1129 atomic regions from SNP 95207 to 95807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,066 DEBUG Processing 427/881 atomic regions from SNP 127941 to 128541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,100 DEBUG Processing 330/1013 atomic regions from SNP 98744 to 99344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,102 DEBUG Processing 171/642 atomic regions from SNP 51099 to 51699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,148 DEBUG Processing 349/469 atomic regions from SNP 104493 to 105093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:13,240 DEBUG Processing 414/847 atomic regions from SNP 124096 to 124696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,299 DEBUG Processing 319/1129 atomic regions from SNP 95507 to 96107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,374 DEBUG Processing 428/881 atomic regions from SNP 128241 to 128841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,423 DEBUG Processing 172/642 atomic regions from SNP 51399 to 51999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,428 DEBUG Processing 331/1013 atomic regions from SNP 99044 to 99644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,456 DEBUG Processing 350/469 atomic regions from SNP 104793 to 105393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:13,568 DEBUG Processing 415/847 atomic regions from SNP 124396 to 124996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,661 DEBUG Processing 320/1129 atomic regions from SNP 95807 to 96407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,678 DEBUG Processing 429/881 atomic regions from SNP 128541 to 129141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,741 DEBUG Processing 173/642 atomic regions from SNP 51699 to 52299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,753 DEBUG Processing 332/1013 atomic regions from SNP 99344 to 99944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,767 DEBUG Processing 351/469 atomic regions from SNP 105093 to 105693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:13,886 DEBUG Processing 416/847 atomic regions from SNP 124696 to 125296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,983 DEBUG Processing 430/881 atomic regions from SNP 128841 to 129441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,003 DEBUG Processing 321/1129 atomic regions from SNP 96107 to 96707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,061 DEBUG Processing 174/642 atomic regions from SNP 51999 to 52599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,079 DEBUG Processing 333/1013 atomic regions from SNP 99644 to 100244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,099 DEBUG Processing 352/469 atomic regions from SNP 105393 to 105993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:14,201 DEBUG Processing 417/847 atomic regions from SNP 124996 to 125596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,287 DEBUG Processing 431/881 atomic regions from SNP 129141 to 129741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,356 DEBUG Processing 322/1129 atomic regions from SNP 96407 to 97007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,380 DEBUG Processing 175/642 atomic regions from SNP 52299 to 52899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,405 DEBUG Processing 334/1013 atomic regions from SNP 99944 to 100544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,436 DEBUG Processing 353/469 atomic regions from SNP 105693 to 106293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:14,501 DEBUG Processing 418/847 atomic regions from SNP 125296 to 125896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,589 DEBUG Processing 432/881 atomic regions from SNP 129441 to 130041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,699 DEBUG Processing 176/642 atomic regions from SNP 52599 to 53199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,707 DEBUG Processing 323/1129 atomic regions from SNP 96707 to 97307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,737 DEBUG Processing 335/1013 atomic regions from SNP 100244 to 100844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,762 DEBUG Processing 354/469 atomic regions from SNP 105993 to 106593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:14,803 DEBUG Processing 419/847 atomic regions from SNP 125596 to 126196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,886 DEBUG Processing 433/881 atomic regions from SNP 129741 to 130341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,020 DEBUG Processing 177/642 atomic regions from SNP 52899 to 53499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,066 DEBUG Processing 336/1013 atomic regions from SNP 100544 to 101144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,073 DEBUG Processing 324/1129 atomic regions from SNP 97007 to 97607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,078 DEBUG Processing 355/469 atomic regions from SNP 106293 to 106893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:15,108 DEBUG Processing 420/847 atomic regions from SNP 125896 to 126496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,183 DEBUG Processing 434/881 atomic regions from SNP 130041 to 130641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,338 DEBUG Processing 178/642 atomic regions from SNP 53199 to 53799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,391 DEBUG Processing 356/469 atomic regions from SNP 106593 to 107193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:15,398 DEBUG Processing 337/1013 atomic regions from SNP 100844 to 101444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,416 DEBUG Processing 421/847 atomic regions from SNP 126196 to 126796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,442 DEBUG Processing 325/1129 atomic regions from SNP 97307 to 97907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,483 DEBUG Processing 435/881 atomic regions from SNP 130341 to 130941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,655 DEBUG Processing 179/642 atomic regions from SNP 53499 to 54099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,722 DEBUG Processing 357/469 atomic regions from SNP 106893 to 107493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:15,725 DEBUG Processing 422/847 atomic regions from SNP 126496 to 127096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,730 DEBUG Processing 338/1013 atomic regions from SNP 101144 to 101744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,786 DEBUG Processing 436/881 atomic regions from SNP 130641 to 131241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,807 DEBUG Processing 326/1129 atomic regions from SNP 97607 to 98207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,970 DEBUG Processing 180/642 atomic regions from SNP 53799 to 54399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,034 DEBUG Processing 423/847 atomic regions from SNP 126796 to 127396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,058 DEBUG Processing 358/469 atomic regions from SNP 107193 to 107793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:16,063 DEBUG Processing 339/1013 atomic regions from SNP 101444 to 102044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,094 DEBUG Processing 437/881 atomic regions from SNP 130941 to 131541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,172 DEBUG Processing 327/1129 atomic regions from SNP 97907 to 98507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,284 DEBUG Processing 181/642 atomic regions from SNP 54099 to 54699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,340 DEBUG Processing 424/847 atomic regions from SNP 127096 to 127696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,370 DEBUG Processing 359/469 atomic regions from SNP 107493 to 108093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:16,394 DEBUG Processing 340/1013 atomic regions from SNP 101744 to 102344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,401 DEBUG Processing 438/881 atomic regions from SNP 131241 to 131841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,525 DEBUG Processing 328/1129 atomic regions from SNP 98207 to 98807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,599 DEBUG Processing 182/642 atomic regions from SNP 54399 to 54999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,645 DEBUG Processing 425/847 atomic regions from SNP 127396 to 127996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,683 DEBUG Processing 360/469 atomic regions from SNP 107793 to 108393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:16,708 DEBUG Processing 439/881 atomic regions from SNP 131541 to 132141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,721 DEBUG Processing 341/1013 atomic regions from SNP 102044 to 102644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,890 DEBUG Processing 329/1129 atomic regions from SNP 98507 to 99107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,914 DEBUG Processing 183/642 atomic regions from SNP 54699 to 55299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,950 DEBUG Processing 426/847 atomic regions from SNP 127696 to 128296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,992 DEBUG Processing 361/469 atomic regions from SNP 108093 to 108693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:17,014 DEBUG Processing 440/881 atomic regions from SNP 131841 to 132441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,045 DEBUG Processing 342/1013 atomic regions from SNP 102344 to 102944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,237 DEBUG Processing 184/642 atomic regions from SNP 54999 to 55599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,248 DEBUG Processing 330/1129 atomic regions from SNP 98807 to 99407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,257 DEBUG Processing 427/847 atomic regions from SNP 127996 to 128596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,304 DEBUG Processing 362/469 atomic regions from SNP 108393 to 108993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:17,320 DEBUG Processing 441/881 atomic regions from SNP 132141 to 132741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,367 DEBUG Processing 343/1013 atomic regions from SNP 102644 to 103244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,558 DEBUG Processing 185/642 atomic regions from SNP 55299 to 55899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,564 DEBUG Processing 428/847 atomic regions from SNP 128296 to 128896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,596 DEBUG Processing 331/1129 atomic regions from SNP 99107 to 99707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,616 DEBUG Processing 363/469 atomic regions from SNP 108693 to 109293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:17,630 DEBUG Processing 442/881 atomic regions from SNP 132441 to 133041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,689 DEBUG Processing 344/1013 atomic regions from SNP 102944 to 103544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,873 DEBUG Processing 429/847 atomic regions from SNP 128596 to 129196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,881 DEBUG Processing 186/642 atomic regions from SNP 55599 to 56199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,933 DEBUG Processing 364/469 atomic regions from SNP 108993 to 109593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:17,941 DEBUG Processing 443/881 atomic regions from SNP 132741 to 133341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,943 DEBUG Processing 332/1129 atomic regions from SNP 99407 to 100007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,010 DEBUG Processing 345/1013 atomic regions from SNP 103244 to 103844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,179 DEBUG Processing 430/847 atomic regions from SNP 128896 to 129496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,202 DEBUG Processing 187/642 atomic regions from SNP 55899 to 56499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,250 DEBUG Processing 444/881 atomic regions from SNP 133041 to 133641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,280 DEBUG Processing 365/469 atomic regions from SNP 109293 to 109893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:18,294 DEBUG Processing 333/1129 atomic regions from SNP 99707 to 100307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,335 DEBUG Processing 346/1013 atomic regions from SNP 103544 to 104144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,481 DEBUG Processing 431/847 atomic regions from SNP 129196 to 129796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,520 DEBUG Processing 188/642 atomic regions from SNP 56199 to 56799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,557 DEBUG Processing 445/881 atomic regions from SNP 133341 to 133941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,619 DEBUG Processing 366/469 atomic regions from SNP 109593 to 110193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:18,637 DEBUG Processing 334/1129 atomic regions from SNP 100007 to 100607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,657 DEBUG Processing 347/1013 atomic regions from SNP 103844 to 104444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,786 DEBUG Processing 432/847 atomic regions from SNP 129496 to 130096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,844 DEBUG Processing 189/642 atomic regions from SNP 56499 to 57099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,877 DEBUG Processing 446/881 atomic regions from SNP 133641 to 134241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,928 DEBUG Processing 367/469 atomic regions from SNP 109893 to 110493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:18,974 DEBUG Processing 335/1129 atomic regions from SNP 100307 to 100907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,983 DEBUG Processing 348/1013 atomic regions from SNP 104144 to 104744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,087 DEBUG Processing 433/847 atomic regions from SNP 129796 to 130396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,158 DEBUG Processing 190/642 atomic regions from SNP 56799 to 57399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,216 DEBUG Processing 447/881 atomic regions from SNP 133941 to 134541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,237 DEBUG Processing 368/469 atomic regions from SNP 110193 to 110793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:19,308 DEBUG Processing 349/1013 atomic regions from SNP 104444 to 105044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,313 DEBUG Processing 336/1129 atomic regions from SNP 100607 to 101207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,388 DEBUG Processing 434/847 atomic regions from SNP 130096 to 130696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,473 DEBUG Processing 191/642 atomic regions from SNP 57099 to 57699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,539 DEBUG Processing 448/881 atomic regions from SNP 134241 to 134841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,549 DEBUG Processing 369/469 atomic regions from SNP 110493 to 111093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:19,636 DEBUG Processing 350/1013 atomic regions from SNP 104744 to 105344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,652 DEBUG Processing 337/1129 atomic regions from SNP 100907 to 101507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,689 DEBUG Processing 435/847 atomic regions from SNP 130396 to 130996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,790 DEBUG Processing 192/642 atomic regions from SNP 57399 to 57999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,859 DEBUG Processing 370/469 atomic regions from SNP 110793 to 111393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:19,867 DEBUG Processing 449/881 atomic regions from SNP 134541 to 135141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,965 DEBUG Processing 351/1013 atomic regions from SNP 105044 to 105644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,989 DEBUG Processing 436/847 atomic regions from SNP 130696 to 131296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,989 DEBUG Processing 338/1129 atomic regions from SNP 101207 to 101807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,107 DEBUG Processing 193/642 atomic regions from SNP 57699 to 58299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,169 DEBUG Processing 371/469 atomic regions from SNP 111093 to 111693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:20,196 DEBUG Processing 450/881 atomic regions from SNP 134841 to 135441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,292 DEBUG Processing 352/1013 atomic regions from SNP 105344 to 105944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,294 DEBUG Processing 437/847 atomic regions from SNP 130996 to 131596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,329 DEBUG Processing 339/1129 atomic regions from SNP 101507 to 102107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,424 DEBUG Processing 194/642 atomic regions from SNP 57999 to 58599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,476 DEBUG Processing 372/469 atomic regions from SNP 111393 to 111993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:20,512 DEBUG Processing 451/881 atomic regions from SNP 135141 to 135741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,599 DEBUG Processing 438/847 atomic regions from SNP 131296 to 131896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,621 DEBUG Processing 353/1013 atomic regions from SNP 105644 to 106244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,667 DEBUG Processing 340/1129 atomic regions from SNP 101807 to 102407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,744 DEBUG Processing 195/642 atomic regions from SNP 58299 to 58899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,785 DEBUG Processing 373/469 atomic regions from SNP 111693 to 112293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:20,816 DEBUG Processing 452/881 atomic regions from SNP 135441 to 136041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,907 DEBUG Processing 439/847 atomic regions from SNP 131596 to 132196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,951 DEBUG Processing 354/1013 atomic regions from SNP 105944 to 106544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,004 DEBUG Processing 341/1129 atomic regions from SNP 102107 to 102707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,065 DEBUG Processing 196/642 atomic regions from SNP 58599 to 59199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,096 DEBUG Processing 374/469 atomic regions from SNP 111993 to 112593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:21,119 DEBUG Processing 453/881 atomic regions from SNP 135741 to 136341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,212 DEBUG Processing 440/847 atomic regions from SNP 131896 to 132496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,278 DEBUG Processing 355/1013 atomic regions from SNP 106244 to 106844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,340 DEBUG Processing 342/1129 atomic regions from SNP 102407 to 103007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,382 DEBUG Processing 197/642 atomic regions from SNP 58899 to 59499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,406 DEBUG Processing 375/469 atomic regions from SNP 112293 to 112893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:21,423 DEBUG Processing 454/881 atomic regions from SNP 136041 to 136641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,514 DEBUG Processing 441/847 atomic regions from SNP 132196 to 132796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,600 DEBUG Processing 356/1013 atomic regions from SNP 106544 to 107144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,679 DEBUG Processing 343/1129 atomic regions from SNP 102707 to 103307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,701 DEBUG Processing 198/642 atomic regions from SNP 59199 to 59799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,719 DEBUG Processing 376/469 atomic regions from SNP 112593 to 113193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:21,729 DEBUG Processing 455/881 atomic regions from SNP 136341 to 136941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,815 DEBUG Processing 442/847 atomic regions from SNP 132496 to 133096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,923 DEBUG Processing 357/1013 atomic regions from SNP 106844 to 107444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,020 DEBUG Processing 344/1129 atomic regions from SNP 103007 to 103607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,020 DEBUG Processing 199/642 atomic regions from SNP 59499 to 60099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,031 DEBUG Processing 377/469 atomic regions from SNP 112893 to 113493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:22,050 DEBUG Processing 456/881 atomic regions from SNP 136641 to 137241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,116 DEBUG Processing 443/847 atomic regions from SNP 132796 to 133396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,242 DEBUG Processing 358/1013 atomic regions from SNP 107144 to 107744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,340 DEBUG Processing 200/642 atomic regions from SNP 59799 to 60399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,345 DEBUG Processing 378/469 atomic regions from SNP 113193 to 113793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:22,365 DEBUG Processing 345/1129 atomic regions from SNP 103307 to 103907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,384 DEBUG Processing 457/881 atomic regions from SNP 136941 to 137541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,419 DEBUG Processing 444/847 atomic regions from SNP 133096 to 133696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,560 DEBUG Processing 359/1013 atomic regions from SNP 107444 to 108044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,661 DEBUG Processing 201/642 atomic regions from SNP 60099 to 60699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,679 DEBUG Processing 379/469 atomic regions from SNP 113493 to 114093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:22,719 DEBUG Processing 458/881 atomic regions from SNP 137241 to 137841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,724 DEBUG Processing 445/847 atomic regions from SNP 133396 to 133996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,725 DEBUG Processing 346/1129 atomic regions from SNP 103607 to 104207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,880 DEBUG Processing 360/1013 atomic regions from SNP 107744 to 108344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,979 DEBUG Processing 202/642 atomic regions from SNP 60399 to 60999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,015 DEBUG Processing 380/469 atomic regions from SNP 113793 to 114393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:23,031 DEBUG Processing 446/847 atomic regions from SNP 133696 to 134296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,056 DEBUG Processing 459/881 atomic regions from SNP 137541 to 138141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,089 DEBUG Processing 347/1129 atomic regions from SNP 103907 to 104507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,201 DEBUG Processing 361/1013 atomic regions from SNP 108044 to 108644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,296 DEBUG Processing 203/642 atomic regions from SNP 60699 to 61299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,326 DEBUG Processing 381/469 atomic regions from SNP 114093 to 114693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:23,337 DEBUG Processing 447/847 atomic regions from SNP 133996 to 134596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,394 DEBUG Processing 460/881 atomic regions from SNP 137841 to 138441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,447 DEBUG Processing 348/1129 atomic regions from SNP 104207 to 104807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,521 DEBUG Processing 362/1013 atomic regions from SNP 108344 to 108944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,622 DEBUG Processing 204/642 atomic regions from SNP 60999 to 61599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,636 DEBUG Processing 382/469 atomic regions from SNP 114393 to 114993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:23,643 DEBUG Processing 448/847 atomic regions from SNP 134296 to 134896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,719 DEBUG Processing 461/881 atomic regions from SNP 138141 to 138741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,812 DEBUG Processing 349/1129 atomic regions from SNP 104507 to 105107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,842 DEBUG Processing 363/1013 atomic regions from SNP 108644 to 109244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,942 DEBUG Processing 205/642 atomic regions from SNP 61299 to 61899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,950 DEBUG Processing 383/469 atomic regions from SNP 114693 to 115293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:23,951 DEBUG Processing 449/847 atomic regions from SNP 134596 to 135196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,045 DEBUG Processing 462/881 atomic regions from SNP 138441 to 139041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,153 DEBUG Processing 350/1129 atomic regions from SNP 104807 to 105407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,163 DEBUG Processing 364/1013 atomic regions from SNP 108944 to 109544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,260 DEBUG Processing 450/847 atomic regions from SNP 134896 to 135496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,262 DEBUG Processing 384/469 atomic regions from SNP 114993 to 115593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:24,263 DEBUG Processing 206/642 atomic regions from SNP 61599 to 62199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,364 DEBUG Processing 463/881 atomic regions from SNP 138741 to 139341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,485 DEBUG Processing 365/1013 atomic regions from SNP 109244 to 109844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,486 DEBUG Processing 351/1129 atomic regions from SNP 105107 to 105707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,567 DEBUG Processing 451/847 atomic regions from SNP 135196 to 135796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,577 DEBUG Processing 385/469 atomic regions from SNP 115293 to 115893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:24,585 DEBUG Processing 207/642 atomic regions from SNP 61899 to 62499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,693 DEBUG Processing 464/881 atomic regions from SNP 139041 to 139641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,811 DEBUG Processing 366/1013 atomic regions from SNP 109544 to 110144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,824 DEBUG Processing 352/1129 atomic regions from SNP 105407 to 106007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,874 DEBUG Processing 452/847 atomic regions from SNP 135496 to 136096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,889 DEBUG Processing 386/469 atomic regions from SNP 115593 to 116193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:24,905 DEBUG Processing 208/642 atomic regions from SNP 62199 to 62799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,994 DEBUG Processing 465/881 atomic regions from SNP 139341 to 139941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,138 DEBUG Processing 367/1013 atomic regions from SNP 109844 to 110444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,162 DEBUG Processing 353/1129 atomic regions from SNP 105707 to 106307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,182 DEBUG Processing 453/847 atomic regions from SNP 135796 to 136396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,203 DEBUG Processing 387/469 atomic regions from SNP 115893 to 116493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:25,226 DEBUG Processing 209/642 atomic regions from SNP 62499 to 63099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,295 DEBUG Processing 466/881 atomic regions from SNP 139641 to 140241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,465 DEBUG Processing 368/1013 atomic regions from SNP 110144 to 110744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,489 DEBUG Processing 454/847 atomic regions from SNP 136096 to 136696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,501 DEBUG Processing 354/1129 atomic regions from SNP 106007 to 106607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,516 DEBUG Processing 388/469 atomic regions from SNP 116193 to 116793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:25,545 DEBUG Processing 210/642 atomic regions from SNP 62799 to 63399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,596 DEBUG Processing 467/881 atomic regions from SNP 139941 to 140541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,791 DEBUG Processing 369/1013 atomic regions from SNP 110444 to 111044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,796 DEBUG Processing 455/847 atomic regions from SNP 136396 to 136996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,829 DEBUG Processing 389/469 atomic regions from SNP 116493 to 117093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:25,865 DEBUG Processing 211/642 atomic regions from SNP 63099 to 63699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,867 DEBUG Processing 355/1129 atomic regions from SNP 106307 to 106907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,898 DEBUG Processing 468/881 atomic regions from SNP 140241 to 140841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,103 DEBUG Processing 456/847 atomic regions from SNP 136696 to 137296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,118 DEBUG Processing 370/1013 atomic regions from SNP 110744 to 111344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,142 DEBUG Processing 390/469 atomic regions from SNP 116793 to 117393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:26,185 DEBUG Processing 212/642 atomic regions from SNP 63399 to 63999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,209 DEBUG Processing 469/881 atomic regions from SNP 140541 to 141141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,214 DEBUG Processing 356/1129 atomic regions from SNP 106607 to 107207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,408 DEBUG Processing 457/847 atomic regions from SNP 136996 to 137596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,448 DEBUG Processing 371/1013 atomic regions from SNP 111044 to 111644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,455 DEBUG Processing 391/469 atomic regions from SNP 117093 to 117693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:26,503 DEBUG Processing 213/642 atomic regions from SNP 63699 to 64299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,549 DEBUG Processing 470/881 atomic regions from SNP 140841 to 141441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,564 DEBUG Processing 357/1129 atomic regions from SNP 106907 to 107507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,709 DEBUG Processing 458/847 atomic regions from SNP 137296 to 137896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,768 DEBUG Processing 392/469 atomic regions from SNP 117393 to 117993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:26,776 DEBUG Processing 372/1013 atomic regions from SNP 111344 to 111944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,820 DEBUG Processing 214/642 atomic regions from SNP 63999 to 64599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,887 DEBUG Processing 471/881 atomic regions from SNP 141141 to 141741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,931 DEBUG Processing 358/1129 atomic regions from SNP 107207 to 107807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,010 DEBUG Processing 459/847 atomic regions from SNP 137596 to 138196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,081 DEBUG Processing 393/469 atomic regions from SNP 117693 to 118293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:27,104 DEBUG Processing 373/1013 atomic regions from SNP 111644 to 112244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,142 DEBUG Processing 215/642 atomic regions from SNP 64299 to 64899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,224 DEBUG Processing 472/881 atomic regions from SNP 141441 to 142041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,298 DEBUG Processing 359/1129 atomic regions from SNP 107507 to 108107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,313 DEBUG Processing 460/847 atomic regions from SNP 137896 to 138496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,391 DEBUG Processing 394/469 atomic regions from SNP 117993 to 118593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:27,429 DEBUG Processing 374/1013 atomic regions from SNP 111944 to 112544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,458 DEBUG Processing 216/642 atomic regions from SNP 64599 to 65199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,566 DEBUG Processing 473/881 atomic regions from SNP 141741 to 142341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,617 DEBUG Processing 461/847 atomic regions from SNP 138196 to 138796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,644 DEBUG Processing 360/1129 atomic regions from SNP 107807 to 108407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,704 DEBUG Processing 395/469 atomic regions from SNP 118293 to 118893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:27,754 DEBUG Processing 375/1013 atomic regions from SNP 112244 to 112844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,775 DEBUG Processing 217/642 atomic regions from SNP 64899 to 65499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,904 DEBUG Processing 474/881 atomic regions from SNP 142041 to 142641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,922 DEBUG Processing 462/847 atomic regions from SNP 138496 to 139096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,005 DEBUG Processing 361/1129 atomic regions from SNP 108107 to 108707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,013 DEBUG Processing 396/469 atomic regions from SNP 118593 to 119193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:28,077 DEBUG Processing 376/1013 atomic regions from SNP 112544 to 113144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,090 DEBUG Processing 218/642 atomic regions from SNP 65199 to 65799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,226 DEBUG Processing 463/847 atomic regions from SNP 138796 to 139396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,239 DEBUG Processing 475/881 atomic regions from SNP 142341 to 142941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,325 DEBUG Processing 397/469 atomic regions from SNP 118893 to 119493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:28,370 DEBUG Processing 362/1129 atomic regions from SNP 108407 to 109007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,404 DEBUG Processing 377/1013 atomic regions from SNP 112844 to 113444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,407 DEBUG Processing 219/642 atomic regions from SNP 65499 to 66099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,528 DEBUG Processing 464/847 atomic regions from SNP 139096 to 139696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,577 DEBUG Processing 476/881 atomic regions from SNP 142641 to 143241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,635 DEBUG Processing 398/469 atomic regions from SNP 119193 to 119793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:28,708 DEBUG Processing 363/1129 atomic regions from SNP 108707 to 109307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,723 DEBUG Processing 220/642 atomic regions from SNP 65799 to 66399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,731 DEBUG Processing 378/1013 atomic regions from SNP 113144 to 113744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,829 DEBUG Processing 465/847 atomic regions from SNP 139396 to 139996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,910 DEBUG Processing 477/881 atomic regions from SNP 142941 to 143541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,945 DEBUG Processing 399/469 atomic regions from SNP 119493 to 120093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:29,040 DEBUG Processing 221/642 atomic regions from SNP 66099 to 66699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,048 DEBUG Processing 364/1129 atomic regions from SNP 109007 to 109607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,060 DEBUG Processing 379/1013 atomic regions from SNP 113444 to 114044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,133 DEBUG Processing 466/847 atomic regions from SNP 139696 to 140296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,243 DEBUG Processing 478/881 atomic regions from SNP 143241 to 143841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,253 DEBUG Processing 400/469 atomic regions from SNP 119793 to 120393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:29,359 DEBUG Processing 222/642 atomic regions from SNP 66399 to 66999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,388 DEBUG Processing 380/1013 atomic regions from SNP 113744 to 114344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,390 DEBUG Processing 365/1129 atomic regions from SNP 109307 to 109907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,437 DEBUG Processing 467/847 atomic regions from SNP 139996 to 140596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,560 DEBUG Processing 401/469 atomic regions from SNP 120093 to 120693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:29,583 DEBUG Processing 479/881 atomic regions from SNP 143541 to 144141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,680 DEBUG Processing 223/642 atomic regions from SNP 66699 to 67299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,722 DEBUG Processing 381/1013 atomic regions from SNP 114044 to 114644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,734 DEBUG Processing 366/1129 atomic regions from SNP 109607 to 110207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,742 DEBUG Processing 468/847 atomic regions from SNP 140296 to 140896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,867 DEBUG Processing 402/469 atomic regions from SNP 120393 to 120993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:29,914 DEBUG Processing 480/881 atomic regions from SNP 143841 to 144441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,001 DEBUG Processing 224/642 atomic regions from SNP 66999 to 67599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,047 DEBUG Processing 469/847 atomic regions from SNP 140596 to 141196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,052 DEBUG Processing 382/1013 atomic regions from SNP 114344 to 114944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,077 DEBUG Processing 367/1129 atomic regions from SNP 109907 to 110507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,175 DEBUG Processing 403/469 atomic regions from SNP 120693 to 121293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:30,239 DEBUG Processing 481/881 atomic regions from SNP 144141 to 144741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,321 DEBUG Processing 225/642 atomic regions from SNP 67299 to 67899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,355 DEBUG Processing 470/847 atomic regions from SNP 140896 to 141496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,381 DEBUG Processing 383/1013 atomic regions from SNP 114644 to 115244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,414 DEBUG Processing 368/1129 atomic regions from SNP 110207 to 110807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,480 DEBUG Processing 404/469 atomic regions from SNP 120993 to 121593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:30,567 DEBUG Processing 482/881 atomic regions from SNP 144441 to 145041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,638 DEBUG Processing 226/642 atomic regions from SNP 67599 to 68199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,661 DEBUG Processing 471/847 atomic regions from SNP 141196 to 141796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,709 DEBUG Processing 384/1013 atomic regions from SNP 114944 to 115544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,751 DEBUG Processing 369/1129 atomic regions from SNP 110507 to 111107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,786 DEBUG Processing 405/469 atomic regions from SNP 121293 to 121893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:30,891 DEBUG Processing 483/881 atomic regions from SNP 144741 to 145341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,954 DEBUG Processing 227/642 atomic regions from SNP 67899 to 68499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,970 DEBUG Processing 472/847 atomic regions from SNP 141496 to 142096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,036 DEBUG Processing 385/1013 atomic regions from SNP 115244 to 115844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,086 DEBUG Processing 370/1129 atomic regions from SNP 110807 to 111407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,097 DEBUG Processing 406/469 atomic regions from SNP 121593 to 122193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:31,223 DEBUG Processing 484/881 atomic regions from SNP 145041 to 145641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,270 DEBUG Processing 228/642 atomic regions from SNP 68199 to 68799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,276 DEBUG Processing 473/847 atomic regions from SNP 141796 to 142396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,362 DEBUG Processing 386/1013 atomic regions from SNP 115544 to 116144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,409 DEBUG Processing 407/469 atomic regions from SNP 121893 to 122493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:31,428 DEBUG Processing 371/1129 atomic regions from SNP 111107 to 111707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,558 DEBUG Processing 485/881 atomic regions from SNP 145341 to 145941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,585 DEBUG Processing 474/847 atomic regions from SNP 142096 to 142696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,589 DEBUG Processing 229/642 atomic regions from SNP 68499 to 69099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,689 DEBUG Processing 387/1013 atomic regions from SNP 115844 to 116444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,718 DEBUG Processing 408/469 atomic regions from SNP 122193 to 122793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:31,765 DEBUG Processing 372/1129 atomic regions from SNP 111407 to 112007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,891 DEBUG Processing 475/847 atomic regions from SNP 142396 to 142996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,903 DEBUG Processing 486/881 atomic regions from SNP 145641 to 146241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,906 DEBUG Processing 230/642 atomic regions from SNP 68799 to 69399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,016 DEBUG Processing 388/1013 atomic regions from SNP 116144 to 116744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,029 DEBUG Processing 409/469 atomic regions from SNP 122493 to 123093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:32,104 DEBUG Processing 373/1129 atomic regions from SNP 111707 to 112307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,198 DEBUG Processing 476/847 atomic regions from SNP 142696 to 143296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,229 DEBUG Processing 231/642 atomic regions from SNP 69099 to 69699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,247 DEBUG Processing 487/881 atomic regions from SNP 145941 to 146541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,341 DEBUG Processing 410/469 atomic regions from SNP 122793 to 123393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:32,347 DEBUG Processing 389/1013 atomic regions from SNP 116444 to 117044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,439 DEBUG Processing 374/1129 atomic regions from SNP 112007 to 112607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,504 DEBUG Processing 477/847 atomic regions from SNP 142996 to 143596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,547 DEBUG Processing 232/642 atomic regions from SNP 69399 to 69999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,575 DEBUG Processing 488/881 atomic regions from SNP 146241 to 146841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,650 DEBUG Processing 411/469 atomic regions from SNP 123093 to 123693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:32,674 DEBUG Processing 390/1013 atomic regions from SNP 116744 to 117344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,775 DEBUG Processing 375/1129 atomic regions from SNP 112307 to 112907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,818 DEBUG Processing 478/847 atomic regions from SNP 143296 to 143896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,863 DEBUG Processing 233/642 atomic regions from SNP 69699 to 70299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,879 DEBUG Processing 489/881 atomic regions from SNP 146541 to 147141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,957 DEBUG Processing 412/469 atomic regions from SNP 123393 to 123993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:32,997 DEBUG Processing 391/1013 atomic regions from SNP 117044 to 117644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,113 DEBUG Processing 376/1129 atomic regions from SNP 112607 to 113207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,137 DEBUG Processing 479/847 atomic regions from SNP 143596 to 144196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,182 DEBUG Processing 234/642 atomic regions from SNP 69999 to 70599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,184 DEBUG Processing 490/881 atomic regions from SNP 146841 to 147441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,264 DEBUG Processing 413/469 atomic regions from SNP 123693 to 124293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:33,333 DEBUG Processing 392/1013 atomic regions from SNP 117344 to 117944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,442 DEBUG Processing 480/847 atomic regions from SNP 143896 to 144496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,453 DEBUG Processing 377/1129 atomic regions from SNP 112907 to 113507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,491 DEBUG Processing 491/881 atomic regions from SNP 147141 to 147741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,500 DEBUG Processing 235/642 atomic regions from SNP 70299 to 70899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,571 DEBUG Processing 414/469 atomic regions from SNP 123993 to 124593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:33,673 DEBUG Processing 393/1013 atomic regions from SNP 117644 to 118244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,747 DEBUG Processing 481/847 atomic regions from SNP 144196 to 144796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,792 DEBUG Processing 378/1129 atomic regions from SNP 113207 to 113807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,797 DEBUG Processing 492/881 atomic regions from SNP 147441 to 148041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,820 DEBUG Processing 236/642 atomic regions from SNP 70599 to 71199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,876 DEBUG Processing 415/469 atomic regions from SNP 124293 to 124893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:33,997 DEBUG Processing 394/1013 atomic regions from SNP 117944 to 118544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,053 DEBUG Processing 482/847 atomic regions from SNP 144496 to 145096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,103 DEBUG Processing 493/881 atomic regions from SNP 147741 to 148341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,135 DEBUG Processing 379/1129 atomic regions from SNP 113507 to 114107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,141 DEBUG Processing 237/642 atomic regions from SNP 70899 to 71499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,183 DEBUG Processing 416/469 atomic regions from SNP 124593 to 125193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:34,321 DEBUG Processing 395/1013 atomic regions from SNP 118244 to 118844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,358 DEBUG Processing 483/847 atomic regions from SNP 144796 to 145396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,409 DEBUG Processing 494/881 atomic regions from SNP 148041 to 148641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,462 DEBUG Processing 238/642 atomic regions from SNP 71199 to 71799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,473 DEBUG Processing 380/1129 atomic regions from SNP 113807 to 114407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,490 DEBUG Processing 417/469 atomic regions from SNP 124893 to 125493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:34,645 DEBUG Processing 396/1013 atomic regions from SNP 118544 to 119144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,662 DEBUG Processing 484/847 atomic regions from SNP 145096 to 145696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,714 DEBUG Processing 495/881 atomic regions from SNP 148341 to 148941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,786 DEBUG Processing 239/642 atomic regions from SNP 71499 to 72099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,803 DEBUG Processing 418/469 atomic regions from SNP 125193 to 125793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:34,817 DEBUG Processing 381/1129 atomic regions from SNP 114107 to 114707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,972 DEBUG Processing 485/847 atomic regions from SNP 145396 to 145996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,974 DEBUG Processing 397/1013 atomic regions from SNP 118844 to 119444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,017 DEBUG Processing 496/881 atomic regions from SNP 148641 to 149241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,111 DEBUG Processing 240/642 atomic regions from SNP 71799 to 72399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,116 DEBUG Processing 419/469 atomic regions from SNP 125493 to 126093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:35,156 DEBUG Processing 382/1129 atomic regions from SNP 114407 to 115007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,281 DEBUG Processing 486/847 atomic regions from SNP 145696 to 146296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,305 DEBUG Processing 398/1013 atomic regions from SNP 119144 to 119744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,320 DEBUG Processing 497/881 atomic regions from SNP 148941 to 149541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,430 DEBUG Processing 420/469 atomic regions from SNP 125793 to 126393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:35,431 DEBUG Processing 241/642 atomic regions from SNP 72099 to 72699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,494 DEBUG Processing 383/1129 atomic regions from SNP 114707 to 115307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,588 DEBUG Processing 487/847 atomic regions from SNP 145996 to 146596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,624 DEBUG Processing 498/881 atomic regions from SNP 149241 to 149841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,645 DEBUG Processing 399/1013 atomic regions from SNP 119444 to 120044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,742 DEBUG Processing 421/469 atomic regions from SNP 126093 to 126693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:35,759 DEBUG Processing 242/642 atomic regions from SNP 72399 to 72999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,828 DEBUG Processing 384/1129 atomic regions from SNP 115007 to 115607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,895 DEBUG Processing 488/847 atomic regions from SNP 146296 to 146896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,929 DEBUG Processing 499/881 atomic regions from SNP 149541 to 150141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,978 DEBUG Processing 400/1013 atomic regions from SNP 119744 to 120344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,052 DEBUG Processing 422/469 atomic regions from SNP 126393 to 126993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:36,096 DEBUG Processing 243/642 atomic regions from SNP 72699 to 73299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,165 DEBUG Processing 385/1129 atomic regions from SNP 115307 to 115907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,199 DEBUG Processing 489/847 atomic regions from SNP 146596 to 147196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,234 DEBUG Processing 500/881 atomic regions from SNP 149841 to 150441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,299 DEBUG Processing 401/1013 atomic regions from SNP 120044 to 120644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,361 DEBUG Processing 423/469 atomic regions from SNP 126693 to 127293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:36,422 DEBUG Processing 244/642 atomic regions from SNP 72999 to 73599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,501 DEBUG Processing 386/1129 atomic regions from SNP 115607 to 116207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,506 DEBUG Processing 490/847 atomic regions from SNP 146896 to 147496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,538 DEBUG Processing 501/881 atomic regions from SNP 150141 to 150741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,645 DEBUG Processing 402/1013 atomic regions from SNP 120344 to 120944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,668 DEBUG Processing 424/469 atomic regions from SNP 126993 to 127593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:36,734 DEBUG Processing 245/642 atomic regions from SNP 73299 to 73899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,811 DEBUG Processing 491/847 atomic regions from SNP 147196 to 147796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,843 DEBUG Processing 387/1129 atomic regions from SNP 115907 to 116507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,843 DEBUG Processing 502/881 atomic regions from SNP 150441 to 151041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,978 DEBUG Processing 425/469 atomic regions from SNP 127293 to 127893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:36,998 DEBUG Processing 403/1013 atomic regions from SNP 120644 to 121244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,051 DEBUG Processing 246/642 atomic regions from SNP 73599 to 74199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,119 DEBUG Processing 492/847 atomic regions from SNP 147496 to 148096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,151 DEBUG Processing 503/881 atomic regions from SNP 150741 to 151341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,183 DEBUG Processing 388/1129 atomic regions from SNP 116207 to 116807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,287 DEBUG Processing 426/469 atomic regions from SNP 127593 to 128193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:37,329 DEBUG Processing 404/1013 atomic regions from SNP 120944 to 121544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,367 DEBUG Processing 247/642 atomic regions from SNP 73899 to 74499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,427 DEBUG Processing 493/847 atomic regions from SNP 147796 to 148396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,457 DEBUG Processing 504/881 atomic regions from SNP 151041 to 151641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,520 DEBUG Processing 389/1129 atomic regions from SNP 116507 to 117107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,597 DEBUG Processing 427/469 atomic regions from SNP 127893 to 128493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:37,651 DEBUG Processing 405/1013 atomic regions from SNP 121244 to 121844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,682 DEBUG Processing 248/642 atomic regions from SNP 74199 to 74799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,732 DEBUG Processing 494/847 atomic regions from SNP 148096 to 148696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,763 DEBUG Processing 505/881 atomic regions from SNP 151341 to 151941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,856 DEBUG Processing 390/1129 atomic regions from SNP 116807 to 117407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,905 DEBUG Processing 428/469 atomic regions from SNP 128193 to 128793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:37,976 DEBUG Processing 406/1013 atomic regions from SNP 121544 to 122144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,998 DEBUG Processing 249/642 atomic regions from SNP 74499 to 75099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,035 DEBUG Processing 495/847 atomic regions from SNP 148396 to 148996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,086 DEBUG Processing 506/881 atomic regions from SNP 151641 to 152241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,193 DEBUG Processing 391/1129 atomic regions from SNP 117107 to 117707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,211 DEBUG Processing 429/469 atomic regions from SNP 128493 to 129093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:38,305 DEBUG Processing 407/1013 atomic regions from SNP 121844 to 122444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,315 DEBUG Processing 250/642 atomic regions from SNP 74799 to 75399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,339 DEBUG Processing 496/847 atomic regions from SNP 148696 to 149296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,417 DEBUG Processing 507/881 atomic regions from SNP 151941 to 152541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,518 DEBUG Processing 430/469 atomic regions from SNP 128793 to 129393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:38,527 DEBUG Processing 392/1129 atomic regions from SNP 117407 to 118007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,634 DEBUG Processing 251/642 atomic regions from SNP 75099 to 75699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,635 DEBUG Processing 408/1013 atomic regions from SNP 122144 to 122744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,643 DEBUG Processing 497/847 atomic regions from SNP 148996 to 149596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,750 DEBUG Processing 508/881 atomic regions from SNP 152241 to 152841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,827 DEBUG Processing 431/469 atomic regions from SNP 129093 to 129693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:38,866 DEBUG Processing 393/1129 atomic regions from SNP 117707 to 118307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,952 DEBUG Processing 498/847 atomic regions from SNP 149296 to 149896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,954 DEBUG Processing 252/642 atomic regions from SNP 75399 to 75999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,965 DEBUG Processing 409/1013 atomic regions from SNP 122444 to 123044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,090 DEBUG Processing 509/881 atomic regions from SNP 152541 to 153141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,135 DEBUG Processing 432/469 atomic regions from SNP 129393 to 129993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:39,204 DEBUG Processing 394/1129 atomic regions from SNP 118007 to 118607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,275 DEBUG Processing 253/642 atomic regions from SNP 75699 to 76299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,279 DEBUG Processing 499/847 atomic regions from SNP 149596 to 150196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,295 DEBUG Processing 410/1013 atomic regions from SNP 122744 to 123344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,434 DEBUG Processing 510/881 atomic regions from SNP 152841 to 153441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,445 DEBUG Processing 433/469 atomic regions from SNP 129693 to 130293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:39,542 DEBUG Processing 395/1129 atomic regions from SNP 118307 to 118907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,595 DEBUG Processing 500/847 atomic regions from SNP 149896 to 150496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,598 DEBUG Processing 254/642 atomic regions from SNP 75999 to 76599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,624 DEBUG Processing 411/1013 atomic regions from SNP 123044 to 123644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,755 DEBUG Processing 434/469 atomic regions from SNP 129993 to 130593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:39,778 DEBUG Processing 511/881 atomic regions from SNP 153141 to 153741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,882 DEBUG Processing 396/1129 atomic regions from SNP 118607 to 119207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,916 DEBUG Processing 255/642 atomic regions from SNP 76299 to 76899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,918 DEBUG Processing 501/847 atomic regions from SNP 150196 to 150796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,970 DEBUG Processing 412/1013 atomic regions from SNP 123344 to 123944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,062 DEBUG Processing 435/469 atomic regions from SNP 130293 to 130893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:40,110 DEBUG Processing 512/881 atomic regions from SNP 153441 to 154041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,225 DEBUG Processing 397/1129 atomic regions from SNP 118907 to 119507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,229 DEBUG Processing 502/847 atomic regions from SNP 150496 to 151096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,234 DEBUG Processing 256/642 atomic regions from SNP 76599 to 77199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,318 DEBUG Processing 413/1013 atomic regions from SNP 123644 to 124244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,369 DEBUG Processing 436/469 atomic regions from SNP 130593 to 131193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:40,441 DEBUG Processing 513/881 atomic regions from SNP 153741 to 154341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,536 DEBUG Processing 503/847 atomic regions from SNP 150796 to 151396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,551 DEBUG Processing 257/642 atomic regions from SNP 76899 to 77499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,567 DEBUG Processing 398/1129 atomic regions from SNP 119207 to 119807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,645 DEBUG Processing 414/1013 atomic regions from SNP 123944 to 124544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,678 DEBUG Processing 437/469 atomic regions from SNP 130893 to 131493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:40,778 DEBUG Processing 514/881 atomic regions from SNP 154041 to 154641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,843 DEBUG Processing 504/847 atomic regions from SNP 151096 to 151696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,873 DEBUG Processing 258/642 atomic regions from SNP 77199 to 77799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,907 DEBUG Processing 399/1129 atomic regions from SNP 119507 to 120107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,979 DEBUG Processing 415/1013 atomic regions from SNP 124244 to 124844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,988 DEBUG Processing 438/469 atomic regions from SNP 131193 to 131793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:41,118 DEBUG Processing 515/881 atomic regions from SNP 154341 to 154941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,150 DEBUG Processing 505/847 atomic regions from SNP 151396 to 151996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,192 DEBUG Processing 259/642 atomic regions from SNP 77499 to 78099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,246 DEBUG Processing 400/1129 atomic regions from SNP 119807 to 120407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,297 DEBUG Processing 439/469 atomic regions from SNP 131493 to 132093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:41,330 DEBUG Processing 416/1013 atomic regions from SNP 124544 to 125144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,456 DEBUG Processing 506/847 atomic regions from SNP 151696 to 152296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,462 DEBUG Processing 516/881 atomic regions from SNP 154641 to 155241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,509 DEBUG Processing 260/642 atomic regions from SNP 77799 to 78399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,584 DEBUG Processing 401/1129 atomic regions from SNP 120107 to 120707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,605 DEBUG Processing 440/469 atomic regions from SNP 131793 to 132393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:41,654 DEBUG Processing 417/1013 atomic regions from SNP 124844 to 125444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,761 DEBUG Processing 507/847 atomic regions from SNP 151996 to 152596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,801 DEBUG Processing 517/881 atomic regions from SNP 154941 to 155541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,827 DEBUG Processing 261/642 atomic regions from SNP 78099 to 78699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,916 DEBUG Processing 441/469 atomic regions from SNP 132093 to 132693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:41,924 DEBUG Processing 402/1129 atomic regions from SNP 120407 to 121007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,979 DEBUG Processing 418/1013 atomic regions from SNP 125144 to 125744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,067 DEBUG Processing 508/847 atomic regions from SNP 152296 to 152896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,144 DEBUG Processing 518/881 atomic regions from SNP 155241 to 155841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,146 DEBUG Processing 262/642 atomic regions from SNP 78399 to 78999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,224 DEBUG Processing 442/469 atomic regions from SNP 132393 to 132993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:42,286 DEBUG Processing 403/1129 atomic regions from SNP 120707 to 121307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,304 DEBUG Processing 419/1013 atomic regions from SNP 125444 to 126044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,371 DEBUG Processing 509/847 atomic regions from SNP 152596 to 153196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,471 DEBUG Processing 263/642 atomic regions from SNP 78699 to 79299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,489 DEBUG Processing 519/881 atomic regions from SNP 155541 to 156141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,533 DEBUG Processing 443/469 atomic regions from SNP 132693 to 133293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:42,634 DEBUG Processing 420/1013 atomic regions from SNP 125744 to 126344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,651 DEBUG Processing 404/1129 atomic regions from SNP 121007 to 121607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,676 DEBUG Processing 510/847 atomic regions from SNP 152896 to 153496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,792 DEBUG Processing 264/642 atomic regions from SNP 78999 to 79599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,827 DEBUG Processing 520/881 atomic regions from SNP 155841 to 156441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,841 DEBUG Processing 444/469 atomic regions from SNP 132993 to 133593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:42,962 DEBUG Processing 421/1013 atomic regions from SNP 126044 to 126644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,981 DEBUG Processing 511/847 atomic regions from SNP 153196 to 153796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,999 DEBUG Processing 405/1129 atomic regions from SNP 121307 to 121907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,114 DEBUG Processing 265/642 atomic regions from SNP 79299 to 79899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,146 DEBUG Processing 521/881 atomic regions from SNP 156141 to 156741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,150 DEBUG Processing 445/469 atomic regions from SNP 133293 to 133893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:43,288 DEBUG Processing 512/847 atomic regions from SNP 153496 to 154096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,294 DEBUG Processing 422/1013 atomic regions from SNP 126344 to 126944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,348 DEBUG Processing 406/1129 atomic regions from SNP 121607 to 122207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,438 DEBUG Processing 266/642 atomic regions from SNP 79599 to 80199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,463 DEBUG Processing 446/469 atomic regions from SNP 133593 to 134193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:43,474 DEBUG Processing 522/881 atomic regions from SNP 156441 to 157041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,596 DEBUG Processing 513/847 atomic regions from SNP 153796 to 154396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,623 DEBUG Processing 423/1013 atomic regions from SNP 126644 to 127244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,699 DEBUG Processing 407/1129 atomic regions from SNP 121907 to 122507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,760 DEBUG Processing 267/642 atomic regions from SNP 79899 to 80499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,775 DEBUG Processing 447/469 atomic regions from SNP 133893 to 134493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:43,804 DEBUG Processing 523/881 atomic regions from SNP 156741 to 157341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,907 DEBUG Processing 514/847 atomic regions from SNP 154096 to 154696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,950 DEBUG Processing 424/1013 atomic regions from SNP 126944 to 127544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,035 DEBUG Processing 408/1129 atomic regions from SNP 122207 to 122807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,081 DEBUG Processing 268/642 atomic regions from SNP 80199 to 80799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,087 DEBUG Processing 448/469 atomic regions from SNP 134193 to 134793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:44,108 DEBUG Processing 524/881 atomic regions from SNP 157041 to 157641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,233 DEBUG Processing 515/847 atomic regions from SNP 154396 to 154996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,278 DEBUG Processing 425/1013 atomic regions from SNP 127244 to 127844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,376 DEBUG Processing 409/1129 atomic regions from SNP 122507 to 123107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,400 DEBUG Processing 449/469 atomic regions from SNP 134493 to 135093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:44,403 DEBUG Processing 269/642 atomic regions from SNP 80499 to 81099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,441 DEBUG Processing 525/881 atomic regions from SNP 157341 to 157941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,534 DEBUG Processing 516/847 atomic regions from SNP 154696 to 155296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,601 DEBUG Processing 426/1013 atomic regions from SNP 127544 to 128144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,714 DEBUG Processing 450/469 atomic regions from SNP 134793 to 135393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:44,716 DEBUG Processing 410/1129 atomic regions from SNP 122807 to 123407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,725 DEBUG Processing 270/642 atomic regions from SNP 80799 to 81399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,775 DEBUG Processing 526/881 atomic regions from SNP 157641 to 158241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,833 DEBUG Processing 517/847 atomic regions from SNP 154996 to 155596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,922 DEBUG Processing 427/1013 atomic regions from SNP 127844 to 128444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,027 DEBUG Processing 451/469 atomic regions from SNP 135093 to 135693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:45,045 DEBUG Processing 271/642 atomic regions from SNP 81099 to 81699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,061 DEBUG Processing 411/1129 atomic regions from SNP 123107 to 123707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,104 DEBUG Processing 527/881 atomic regions from SNP 157941 to 158541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,135 DEBUG Processing 518/847 atomic regions from SNP 155296 to 155896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,243 DEBUG Processing 428/1013 atomic regions from SNP 128144 to 128744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,338 DEBUG Processing 452/469 atomic regions from SNP 135393 to 135993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:45,368 DEBUG Processing 272/642 atomic regions from SNP 81399 to 81999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,403 DEBUG Processing 412/1129 atomic regions from SNP 123407 to 124007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,432 DEBUG Processing 528/881 atomic regions from SNP 158241 to 158841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,439 DEBUG Processing 519/847 atomic regions from SNP 155596 to 156196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,582 DEBUG Processing 429/1013 atomic regions from SNP 128444 to 129044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,647 DEBUG Processing 453/469 atomic regions from SNP 135693 to 136293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:45,689 DEBUG Processing 273/642 atomic regions from SNP 81699 to 82299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,744 DEBUG Processing 413/1129 atomic regions from SNP 123707 to 124307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,745 DEBUG Processing 520/847 atomic regions from SNP 155896 to 156496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,747 DEBUG Processing 529/881 atomic regions from SNP 158541 to 159141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,928 DEBUG Processing 430/1013 atomic regions from SNP 128744 to 129344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,959 DEBUG Processing 454/469 atomic regions from SNP 135993 to 136593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:46,008 DEBUG Processing 274/642 atomic regions from SNP 81999 to 82599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,053 DEBUG Processing 521/847 atomic regions from SNP 156196 to 156796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,057 DEBUG Processing 530/881 atomic regions from SNP 158841 to 159441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,092 DEBUG Processing 414/1129 atomic regions from SNP 124007 to 124607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,252 DEBUG Processing 431/1013 atomic regions from SNP 129044 to 129644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,269 DEBUG Processing 455/469 atomic regions from SNP 136293 to 136893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:46,327 DEBUG Processing 275/642 atomic regions from SNP 82299 to 82899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,360 DEBUG Processing 522/847 atomic regions from SNP 156496 to 157096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,365 DEBUG Processing 531/881 atomic regions from SNP 159141 to 159741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,440 DEBUG Processing 415/1129 atomic regions from SNP 124307 to 124907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,577 DEBUG Processing 432/1013 atomic regions from SNP 129344 to 129944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,581 DEBUG Processing 456/469 atomic regions from SNP 136593 to 137193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:46,648 DEBUG Processing 276/642 atomic regions from SNP 82599 to 83199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,669 DEBUG Processing 523/847 atomic regions from SNP 156796 to 157396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,675 DEBUG Processing 532/881 atomic regions from SNP 159441 to 160041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,808 DEBUG Processing 416/1129 atomic regions from SNP 124607 to 125207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,891 DEBUG Processing 457/469 atomic regions from SNP 136893 to 137493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:46,903 DEBUG Processing 433/1013 atomic regions from SNP 129644 to 130244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,969 DEBUG Processing 277/642 atomic regions from SNP 82899 to 83499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,974 DEBUG Processing 524/847 atomic regions from SNP 157096 to 157696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,981 DEBUG Processing 533/881 atomic regions from SNP 159741 to 160341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,171 DEBUG Processing 417/1129 atomic regions from SNP 124907 to 125507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,205 DEBUG Processing 458/469 atomic regions from SNP 137193 to 137793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:47,234 DEBUG Processing 434/1013 atomic regions from SNP 129944 to 130544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,281 DEBUG Processing 525/847 atomic regions from SNP 157396 to 157996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,290 DEBUG Processing 534/881 atomic regions from SNP 160041 to 160641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,293 DEBUG Processing 278/642 atomic regions from SNP 83199 to 83799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,516 DEBUG Processing 459/469 atomic regions from SNP 137493 to 138093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:47,537 DEBUG Processing 418/1129 atomic regions from SNP 125207 to 125807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,564 DEBUG Processing 435/1013 atomic regions from SNP 130244 to 130844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,590 DEBUG Processing 526/847 atomic regions from SNP 157696 to 158296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,598 DEBUG Processing 535/881 atomic regions from SNP 160341 to 160941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,613 DEBUG Processing 279/642 atomic regions from SNP 83499 to 84099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,827 DEBUG Processing 460/469 atomic regions from SNP 137793 to 138393 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:47,895 DEBUG Processing 436/1013 atomic regions from SNP 130544 to 131144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,899 DEBUG Processing 527/847 atomic regions from SNP 157996 to 158596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,904 DEBUG Processing 419/1129 atomic regions from SNP 125507 to 126107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,908 DEBUG Processing 536/881 atomic regions from SNP 160641 to 161241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,933 DEBUG Processing 280/642 atomic regions from SNP 83799 to 84399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,136 DEBUG Processing 461/469 atomic regions from SNP 138093 to 138693 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:48,211 DEBUG Processing 528/847 atomic regions from SNP 158296 to 158896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,223 DEBUG Processing 537/881 atomic regions from SNP 160941 to 161541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,231 DEBUG Processing 437/1013 atomic regions from SNP 130844 to 131444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,259 DEBUG Processing 281/642 atomic regions from SNP 84099 to 84699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,272 DEBUG Processing 420/1129 atomic regions from SNP 125807 to 126407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,438 DEBUG Processing 462/469 atomic regions from SNP 138393 to 138993 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:48,519 DEBUG Processing 529/847 atomic regions from SNP 158596 to 159196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,534 DEBUG Processing 538/881 atomic regions from SNP 161241 to 161841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,562 DEBUG Processing 438/1013 atomic regions from SNP 131144 to 131744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,581 DEBUG Processing 282/642 atomic regions from SNP 84399 to 84999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,640 DEBUG Processing 421/1129 atomic regions from SNP 126107 to 126707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,741 DEBUG Processing 463/469 atomic regions from SNP 138693 to 139293 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:48,825 DEBUG Processing 530/847 atomic regions from SNP 158896 to 159496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,840 DEBUG Processing 539/881 atomic regions from SNP 161541 to 162141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,890 DEBUG Processing 439/1013 atomic regions from SNP 131444 to 132044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,907 DEBUG Processing 283/642 atomic regions from SNP 84699 to 85299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,014 DEBUG Processing 422/1129 atomic regions from SNP 126407 to 127007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,046 DEBUG Processing 464/469 atomic regions from SNP 138993 to 139593 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:49,129 DEBUG Processing 531/847 atomic regions from SNP 159196 to 159796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,147 DEBUG Processing 540/881 atomic regions from SNP 161841 to 162441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,217 DEBUG Processing 440/1013 atomic regions from SNP 131744 to 132344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,223 DEBUG Processing 284/642 atomic regions from SNP 84999 to 85599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,354 DEBUG Processing 465/469 atomic regions from SNP 139293 to 139893 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:49,386 DEBUG Processing 423/1129 atomic regions from SNP 126707 to 127307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,435 DEBUG Processing 532/847 atomic regions from SNP 159496 to 160096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,475 DEBUG Processing 541/881 atomic regions from SNP 162141 to 162741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,539 DEBUG Processing 285/642 atomic regions from SNP 85299 to 85899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,543 DEBUG Processing 441/1013 atomic regions from SNP 132044 to 132644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,662 DEBUG Processing 466/469 atomic regions from SNP 139593 to 140193 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:49,745 DEBUG Processing 424/1129 atomic regions from SNP 127007 to 127607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,774 DEBUG Processing 533/847 atomic regions from SNP 159796 to 160396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,801 DEBUG Processing 542/881 atomic regions from SNP 162441 to 163041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,854 DEBUG Processing 286/642 atomic regions from SNP 85599 to 86199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,871 DEBUG Processing 442/1013 atomic regions from SNP 132344 to 132944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,970 DEBUG Processing 467/469 atomic regions from SNP 139893 to 140493 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:50,078 DEBUG Processing 534/847 atomic regions from SNP 160096 to 160696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,085 DEBUG Processing 425/1129 atomic regions from SNP 127307 to 127907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,120 DEBUG Processing 543/881 atomic regions from SNP 162741 to 163341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,172 DEBUG Processing 287/642 atomic regions from SNP 85899 to 86499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,195 DEBUG Processing 443/1013 atomic regions from SNP 132644 to 133244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,274 DEBUG Processing 468/469 atomic regions from SNP 140193 to 140793 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:50,383 DEBUG Processing 535/847 atomic regions from SNP 160396 to 160996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,425 DEBUG Processing 426/1129 atomic regions from SNP 127607 to 128207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,457 DEBUG Processing 544/881 atomic regions from SNP 163041 to 163641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,488 DEBUG Processing 288/642 atomic regions from SNP 86199 to 86799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,521 DEBUG Processing 444/1013 atomic regions from SNP 132944 to 133544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,577 DEBUG Processing 469/469 atomic regions from SNP 140493 to 141093 for chrX (subchromosome 3 of 4). 2025-01-31 09:45:50,699 DEBUG Processing 536/847 atomic regions from SNP 160696 to 161296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,765 DEBUG Processing 427/1129 atomic regions from SNP 127907 to 128507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,780 DEBUG Processing 545/881 atomic regions from SNP 163341 to 163941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,783 DEBUG Unique SNPs positions in subchromosome 3: 141094 2025-01-31 09:45:50,808 DEBUG Processing 289/642 atomic regions from SNP 86499 to 87099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,846 DEBUG Processing 445/1013 atomic regions from SNP 133244 to 133844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,006 DEBUG Processing 537/847 atomic regions from SNP 160996 to 161596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,093 DEBUG Processing 546/881 atomic regions from SNP 163641 to 164241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,103 DEBUG Processing 428/1129 atomic regions from SNP 128207 to 128807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,127 DEBUG Processing 290/642 atomic regions from SNP 86799 to 87399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,169 DEBUG Processing 446/1013 atomic regions from SNP 133544 to 134144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,244 DEBUG Subchromosome time: 164.1472629349446, subchromosome SNPs: 141094 2025-01-31 09:45:51,261 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:51,301 DEBUG Processing 538/847 atomic regions from SNP 161296 to 161896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,431 DEBUG Processing 547/881 atomic regions from SNP 163941 to 164541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,444 DEBUG Processing 429/1129 atomic regions from SNP 128507 to 129107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,446 DEBUG Processing 291/642 atomic regions from SNP 87099 to 87699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,492 DEBUG Processing 447/1013 atomic regions from SNP 133844 to 134444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,595 DEBUG Processing 539/847 atomic regions from SNP 161596 to 162196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,767 DEBUG Processing 292/642 atomic regions from SNP 87399 to 87999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,772 DEBUG Processing 548/881 atomic regions from SNP 164241 to 164841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,784 DEBUG Processing 430/1129 atomic regions from SNP 128807 to 129407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,816 DEBUG Processing 448/1013 atomic regions from SNP 134144 to 134744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,889 DEBUG Processing 540/847 atomic regions from SNP 161896 to 162496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,087 DEBUG Processing 293/642 atomic regions from SNP 87699 to 88299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,100 DEBUG Processing 549/881 atomic regions from SNP 164541 to 165141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,126 DEBUG Processing 431/1129 atomic regions from SNP 129107 to 129707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,142 DEBUG Processing 449/1013 atomic regions from SNP 134444 to 135044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,185 DEBUG Processing 541/847 atomic regions from SNP 162196 to 162796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,408 DEBUG Processing 294/642 atomic regions from SNP 87999 to 88599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,410 DEBUG Processing 550/881 atomic regions from SNP 164841 to 165441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,466 DEBUG Processing 432/1129 atomic regions from SNP 129407 to 130007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,468 DEBUG Processing 450/1013 atomic regions from SNP 134744 to 135344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,483 DEBUG Processing 542/847 atomic regions from SNP 162496 to 163096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,730 DEBUG Processing 295/642 atomic regions from SNP 88299 to 88899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,735 DEBUG Processing 551/881 atomic regions from SNP 165141 to 165741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,787 DEBUG Processing 543/847 atomic regions from SNP 162796 to 163396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,795 DEBUG Processing 451/1013 atomic regions from SNP 135044 to 135644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,804 DEBUG Processing 433/1129 atomic regions from SNP 129707 to 130307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,049 DEBUG Processing 296/642 atomic regions from SNP 88599 to 89199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,077 DEBUG Processing 552/881 atomic regions from SNP 165441 to 166041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,093 DEBUG Processing 544/847 atomic regions from SNP 163096 to 163696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,122 DEBUG Processing 452/1013 atomic regions from SNP 135344 to 135944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,143 DEBUG Processing 434/1129 atomic regions from SNP 130007 to 130607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,364 DEBUG Processing 297/642 atomic regions from SNP 88899 to 89499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,397 DEBUG Processing 545/847 atomic regions from SNP 163396 to 163996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,399 DEBUG Processing 553/881 atomic regions from SNP 165741 to 166341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,447 DEBUG Processing 453/1013 atomic regions from SNP 135644 to 136244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,478 DEBUG Processing 435/1129 atomic regions from SNP 130307 to 130907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,679 DEBUG Processing 298/642 atomic regions from SNP 89199 to 89799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,703 DEBUG Processing 546/847 atomic regions from SNP 163696 to 164296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,707 DEBUG Processing 554/881 atomic regions from SNP 166041 to 166641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,771 DEBUG Processing 454/1013 atomic regions from SNP 135944 to 136544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,812 DEBUG Processing 436/1129 atomic regions from SNP 130607 to 131207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,995 DEBUG Processing 299/642 atomic regions from SNP 89499 to 90099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,010 DEBUG Processing 547/847 atomic regions from SNP 163996 to 164596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,014 DEBUG Processing 555/881 atomic regions from SNP 166341 to 166941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,096 DEBUG Processing 455/1013 atomic regions from SNP 136244 to 136844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,145 DEBUG Processing 437/1129 atomic regions from SNP 130907 to 131507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,314 DEBUG Processing 300/642 atomic regions from SNP 89799 to 90399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,316 DEBUG Processing 548/847 atomic regions from SNP 164296 to 164896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,321 DEBUG Processing 556/881 atomic regions from SNP 166641 to 167241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,420 DEBUG Processing 456/1013 atomic regions from SNP 136544 to 137144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,475 DEBUG Processing 438/1129 atomic regions from SNP 131207 to 131807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,620 DEBUG Processing 549/847 atomic regions from SNP 164596 to 165196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,634 DEBUG Processing 301/642 atomic regions from SNP 90099 to 90699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,657 DEBUG Processing 557/881 atomic regions from SNP 166941 to 167541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,743 DEBUG Processing 457/1013 atomic regions from SNP 136844 to 137444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,803 DEBUG Processing 439/1129 atomic regions from SNP 131507 to 132107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,924 DEBUG Processing 550/847 atomic regions from SNP 164896 to 165496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,953 DEBUG Processing 302/642 atomic regions from SNP 90399 to 90999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,995 DEBUG Processing 558/881 atomic regions from SNP 167241 to 167841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,064 DEBUG Processing 458/1013 atomic regions from SNP 137144 to 137744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,135 DEBUG Processing 440/1129 atomic regions from SNP 131807 to 132407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,224 DEBUG Processing 551/847 atomic regions from SNP 165196 to 165796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,269 DEBUG Processing 303/642 atomic regions from SNP 90699 to 91299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,327 DEBUG Processing 559/881 atomic regions from SNP 167541 to 168141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,384 DEBUG Processing 459/1013 atomic regions from SNP 137444 to 138044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,473 DEBUG Processing 441/1129 atomic regions from SNP 132107 to 132707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,522 DEBUG Processing 552/847 atomic regions from SNP 165496 to 166096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,583 DEBUG Processing 304/642 atomic regions from SNP 90999 to 91599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,650 DEBUG Processing 560/881 atomic regions from SNP 167841 to 168441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,703 DEBUG Processing 460/1013 atomic regions from SNP 137744 to 138344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,814 DEBUG Processing 442/1129 atomic regions from SNP 132407 to 133007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,821 DEBUG Processing 553/847 atomic regions from SNP 165796 to 166396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,898 DEBUG Processing 305/642 atomic regions from SNP 91299 to 91899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,960 DEBUG Processing 561/881 atomic regions from SNP 168141 to 168741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,025 DEBUG Processing 461/1013 atomic regions from SNP 138044 to 138644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,121 DEBUG Processing 554/847 atomic regions from SNP 166096 to 166696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,150 DEBUG Processing 443/1129 atomic regions from SNP 132707 to 133307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,218 DEBUG Processing 306/642 atomic regions from SNP 91599 to 92199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,285 DEBUG Processing 562/881 atomic regions from SNP 168441 to 169041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,346 DEBUG Processing 462/1013 atomic regions from SNP 138344 to 138944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,452 DEBUG Processing 555/847 atomic regions from SNP 166396 to 166996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,485 DEBUG Processing 444/1129 atomic regions from SNP 133007 to 133607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,538 DEBUG Processing 307/642 atomic regions from SNP 91899 to 92499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,608 DEBUG Processing 563/881 atomic regions from SNP 168741 to 169341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,670 DEBUG Processing 463/1013 atomic regions from SNP 138644 to 139244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,782 DEBUG Processing 556/847 atomic regions from SNP 166696 to 167296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,820 DEBUG Processing 445/1129 atomic regions from SNP 133307 to 133907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,856 DEBUG Processing 308/642 atomic regions from SNP 92199 to 92799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,913 DEBUG Processing 564/881 atomic regions from SNP 169041 to 169641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,994 DEBUG Processing 464/1013 atomic regions from SNP 138944 to 139544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,102 DEBUG Processing 557/847 atomic regions from SNP 166996 to 167596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,154 DEBUG Processing 446/1129 atomic regions from SNP 133607 to 134207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,174 DEBUG Processing 309/642 atomic regions from SNP 92499 to 93099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,234 DEBUG Processing 565/881 atomic regions from SNP 169341 to 169941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,316 DEBUG Processing 465/1013 atomic regions from SNP 139244 to 139844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,417 DEBUG Processing 558/847 atomic regions from SNP 167296 to 167896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,490 DEBUG Processing 447/1129 atomic regions from SNP 133907 to 134507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,493 DEBUG Processing 310/642 atomic regions from SNP 92799 to 93399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,557 DEBUG Processing 566/881 atomic regions from SNP 169641 to 170241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,638 DEBUG Processing 466/1013 atomic regions from SNP 139544 to 140144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,715 DEBUG Processing 559/847 atomic regions from SNP 167596 to 168196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,811 DEBUG Processing 311/642 atomic regions from SNP 93099 to 93699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,826 DEBUG Processing 448/1129 atomic regions from SNP 134207 to 134807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,883 DEBUG Processing 567/881 atomic regions from SNP 169941 to 170541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,956 DEBUG Processing 467/1013 atomic regions from SNP 139844 to 140444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,011 DEBUG Processing 560/847 atomic regions from SNP 167896 to 168496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,130 DEBUG Processing 312/642 atomic regions from SNP 93399 to 93999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,167 DEBUG Processing 449/1129 atomic regions from SNP 134507 to 135107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,221 DEBUG Processing 568/881 atomic regions from SNP 170241 to 170841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,276 DEBUG Processing 468/1013 atomic regions from SNP 140144 to 140744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,307 DEBUG Processing 561/847 atomic regions from SNP 168196 to 168796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,447 DEBUG Processing 313/642 atomic regions from SNP 93699 to 94299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,499 DEBUG Processing 450/1129 atomic regions from SNP 134807 to 135407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,553 DEBUG Processing 569/881 atomic regions from SNP 170541 to 171141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,599 DEBUG Processing 469/1013 atomic regions from SNP 140444 to 141044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,605 DEBUG Processing 562/847 atomic regions from SNP 168496 to 169096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,762 DEBUG Processing 314/642 atomic regions from SNP 93999 to 94599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,831 DEBUG Processing 451/1129 atomic regions from SNP 135107 to 135707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,885 DEBUG Processing 570/881 atomic regions from SNP 170841 to 171441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,907 DEBUG Processing 563/847 atomic regions from SNP 168796 to 169396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,925 DEBUG Processing 470/1013 atomic regions from SNP 140744 to 141344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,079 DEBUG Processing 315/642 atomic regions from SNP 94299 to 94899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,165 DEBUG Processing 452/1129 atomic regions from SNP 135407 to 136007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,188 DEBUG Processing 571/881 atomic regions from SNP 171141 to 171741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,208 DEBUG Processing 564/847 atomic regions from SNP 169096 to 169696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,249 DEBUG Processing 471/1013 atomic regions from SNP 141044 to 141644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,393 DEBUG Processing 316/642 atomic regions from SNP 94599 to 95199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,494 DEBUG Processing 572/881 atomic regions from SNP 171441 to 172041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,501 DEBUG Processing 453/1129 atomic regions from SNP 135707 to 136307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,516 DEBUG Processing 565/847 atomic regions from SNP 169396 to 169996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,571 DEBUG Processing 472/1013 atomic regions from SNP 141344 to 141944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,706 DEBUG Processing 317/642 atomic regions from SNP 94899 to 95499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,714 DEBUG Segmenting atomic regions: 2025-01-31 09:45:59,805 DEBUG Processing 573/881 atomic regions from SNP 171741 to 172341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,821 DEBUG Processing 1/234 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 4). 2025-01-31 09:45:59,838 DEBUG Processing 454/1129 atomic regions from SNP 136007 to 136607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,840 DEBUG Processing 566/847 atomic regions from SNP 169696 to 170296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,893 DEBUG Processing 473/1013 atomic regions from SNP 141644 to 142244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,020 DEBUG Processing 318/642 atomic regions from SNP 95199 to 95799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,127 DEBUG Processing 2/234 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:00,152 DEBUG Processing 574/881 atomic regions from SNP 172041 to 172641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,161 DEBUG Processing 567/847 atomic regions from SNP 169996 to 170596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,185 DEBUG Processing 455/1129 atomic regions from SNP 136307 to 136907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,219 DEBUG Processing 474/1013 atomic regions from SNP 141944 to 142544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,342 DEBUG Processing 319/642 atomic regions from SNP 95499 to 96099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,433 DEBUG Processing 3/234 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:00,469 DEBUG Processing 568/847 atomic regions from SNP 170296 to 170896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,500 DEBUG Processing 575/881 atomic regions from SNP 172341 to 172941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,527 DEBUG Processing 456/1129 atomic regions from SNP 136607 to 137207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,547 DEBUG Processing 475/1013 atomic regions from SNP 142244 to 142844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,653 DEBUG Processing 320/642 atomic regions from SNP 95799 to 96399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,737 DEBUG Processing 4/234 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:00,775 DEBUG Processing 569/847 atomic regions from SNP 170596 to 171196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,823 DEBUG Processing 576/881 atomic regions from SNP 172641 to 173241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,867 DEBUG Processing 457/1129 atomic regions from SNP 136907 to 137507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,872 DEBUG Processing 476/1013 atomic regions from SNP 142544 to 143144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,966 DEBUG Processing 321/642 atomic regions from SNP 96099 to 96699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,040 DEBUG Processing 5/234 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:01,080 DEBUG Processing 570/847 atomic regions from SNP 170896 to 171496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,138 DEBUG Processing 577/881 atomic regions from SNP 172941 to 173541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,200 DEBUG Processing 477/1013 atomic regions from SNP 142844 to 143444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,205 DEBUG Processing 458/1129 atomic regions from SNP 137207 to 137807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,281 DEBUG Processing 322/642 atomic regions from SNP 96399 to 96999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,345 DEBUG Processing 6/234 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:01,383 DEBUG Processing 571/847 atomic regions from SNP 171196 to 171796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,450 DEBUG Processing 578/881 atomic regions from SNP 173241 to 173841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,529 DEBUG Processing 478/1013 atomic regions from SNP 143144 to 143744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,544 DEBUG Processing 459/1129 atomic regions from SNP 137507 to 138107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,600 DEBUG Processing 323/642 atomic regions from SNP 96699 to 97299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,650 DEBUG Processing 7/234 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:01,687 DEBUG Processing 572/847 atomic regions from SNP 171496 to 172096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,769 DEBUG Processing 579/881 atomic regions from SNP 173541 to 174141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,857 DEBUG Processing 479/1013 atomic regions from SNP 143444 to 144044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,880 DEBUG Processing 460/1129 atomic regions from SNP 137807 to 138407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,919 DEBUG Processing 324/642 atomic regions from SNP 96999 to 97599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,956 DEBUG Processing 8/234 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:01,989 DEBUG Processing 573/847 atomic regions from SNP 171796 to 172396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,076 DEBUG Processing 580/881 atomic regions from SNP 173841 to 174441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,180 DEBUG Processing 480/1013 atomic regions from SNP 143744 to 144344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,221 DEBUG Processing 461/1129 atomic regions from SNP 138107 to 138707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,245 DEBUG Processing 325/642 atomic regions from SNP 97299 to 97899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,264 DEBUG Processing 9/234 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:02,294 DEBUG Processing 574/847 atomic regions from SNP 172096 to 172696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,378 DEBUG Processing 581/881 atomic regions from SNP 174141 to 174741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,539 DEBUG Processing 481/1013 atomic regions from SNP 144044 to 144644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,561 DEBUG Processing 462/1129 atomic regions from SNP 138407 to 139007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,577 DEBUG Processing 10/234 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:02,582 DEBUG Processing 326/642 atomic regions from SNP 97599 to 98199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,601 DEBUG Processing 575/847 atomic regions from SNP 172396 to 172996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,678 DEBUG Processing 582/881 atomic regions from SNP 174441 to 175041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,892 DEBUG Processing 11/234 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:02,905 DEBUG Processing 482/1013 atomic regions from SNP 144344 to 144944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,906 DEBUG Processing 327/642 atomic regions from SNP 97899 to 98499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,907 DEBUG Processing 463/1129 atomic regions from SNP 138707 to 139307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,913 DEBUG Processing 576/847 atomic regions from SNP 172696 to 173296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,004 DEBUG Processing 583/881 atomic regions from SNP 174741 to 175341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,206 DEBUG Processing 12/234 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:03,230 DEBUG Processing 577/847 atomic regions from SNP 172996 to 173596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,231 DEBUG Processing 328/642 atomic regions from SNP 98199 to 98799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,255 DEBUG Processing 464/1129 atomic regions from SNP 139007 to 139607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,276 DEBUG Processing 483/1013 atomic regions from SNP 144644 to 145244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,335 DEBUG Processing 584/881 atomic regions from SNP 175041 to 175641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,518 DEBUG Processing 13/234 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:03,541 DEBUG Processing 578/847 atomic regions from SNP 173296 to 173896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,553 DEBUG Processing 329/642 atomic regions from SNP 98499 to 99099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,599 DEBUG Processing 465/1129 atomic regions from SNP 139307 to 139907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,621 DEBUG Processing 484/1013 atomic regions from SNP 144944 to 145544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,652 DEBUG Processing 585/881 atomic regions from SNP 175341 to 175941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,828 DEBUG Processing 14/234 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:03,852 DEBUG Processing 579/847 atomic regions from SNP 173596 to 174196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,874 DEBUG Processing 330/642 atomic regions from SNP 98799 to 99399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,951 DEBUG Processing 485/1013 atomic regions from SNP 145244 to 145844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,960 DEBUG Processing 466/1129 atomic regions from SNP 139607 to 140207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,977 DEBUG Processing 586/881 atomic regions from SNP 175641 to 176241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,136 DEBUG Processing 15/234 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:04,182 DEBUG Processing 580/847 atomic regions from SNP 173896 to 174496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,192 DEBUG Processing 331/642 atomic regions from SNP 99099 to 99699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,280 DEBUG Processing 486/1013 atomic regions from SNP 145544 to 146144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,316 DEBUG Processing 587/881 atomic regions from SNP 175941 to 176541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,335 DEBUG Processing 467/1129 atomic regions from SNP 139907 to 140507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,443 DEBUG Processing 16/234 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:04,509 DEBUG Processing 581/847 atomic regions from SNP 174196 to 174796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,509 DEBUG Processing 332/642 atomic regions from SNP 99399 to 99999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,608 DEBUG Processing 487/1013 atomic regions from SNP 145844 to 146444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,661 DEBUG Processing 588/881 atomic regions from SNP 176241 to 176841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,680 DEBUG Processing 468/1129 atomic regions from SNP 140207 to 140807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,750 DEBUG Processing 17/234 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:04,818 DEBUG Processing 582/847 atomic regions from SNP 174496 to 175096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,826 DEBUG Processing 333/642 atomic regions from SNP 99699 to 100299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,937 DEBUG Processing 488/1013 atomic regions from SNP 146144 to 146744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,007 DEBUG Processing 589/881 atomic regions from SNP 176541 to 177141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,018 DEBUG Processing 469/1129 atomic regions from SNP 140507 to 141107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,058 DEBUG Processing 18/234 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:05,130 DEBUG Processing 583/847 atomic regions from SNP 174796 to 175396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,140 DEBUG Processing 334/642 atomic regions from SNP 99999 to 100599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,263 DEBUG Processing 489/1013 atomic regions from SNP 146444 to 147044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,351 DEBUG Processing 590/881 atomic regions from SNP 176841 to 177441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,358 DEBUG Processing 470/1129 atomic regions from SNP 140807 to 141407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,365 DEBUG Processing 19/234 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:05,447 DEBUG Processing 584/847 atomic regions from SNP 175096 to 175696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,454 DEBUG Processing 335/642 atomic regions from SNP 100299 to 100899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,588 DEBUG Processing 490/1013 atomic regions from SNP 146744 to 147344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,675 DEBUG Processing 20/234 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:05,695 DEBUG Processing 591/881 atomic regions from SNP 177141 to 177741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,699 DEBUG Processing 471/1129 atomic regions from SNP 141107 to 141707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,779 DEBUG Processing 336/642 atomic regions from SNP 100599 to 101199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,782 DEBUG Processing 585/847 atomic regions from SNP 175396 to 175996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,910 DEBUG Processing 491/1013 atomic regions from SNP 147044 to 147644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,983 DEBUG Processing 21/234 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:06,037 DEBUG Processing 592/881 atomic regions from SNP 177441 to 178041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,042 DEBUG Processing 472/1129 atomic regions from SNP 141407 to 142007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,086 DEBUG Processing 586/847 atomic regions from SNP 175696 to 176296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,119 DEBUG Processing 337/642 atomic regions from SNP 100899 to 101499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,236 DEBUG Processing 492/1013 atomic regions from SNP 147344 to 147944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,289 DEBUG Processing 22/234 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:06,377 DEBUG Processing 593/881 atomic regions from SNP 177741 to 178341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,386 DEBUG Processing 473/1129 atomic regions from SNP 141707 to 142307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,392 DEBUG Processing 587/847 atomic regions from SNP 175996 to 176596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,437 DEBUG Processing 338/642 atomic regions from SNP 101199 to 101799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,561 DEBUG Processing 493/1013 atomic regions from SNP 147644 to 148244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,594 DEBUG Processing 23/234 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:06,700 DEBUG Processing 588/847 atomic regions from SNP 176296 to 176896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,707 DEBUG Processing 594/881 atomic regions from SNP 178041 to 178641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,728 DEBUG Processing 474/1129 atomic regions from SNP 142007 to 142607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,754 DEBUG Processing 339/642 atomic regions from SNP 101499 to 102099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,887 DEBUG Processing 494/1013 atomic regions from SNP 147944 to 148544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,899 DEBUG Processing 24/234 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:07,008 DEBUG Processing 589/847 atomic regions from SNP 176596 to 177196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,016 DEBUG Processing 595/881 atomic regions from SNP 178341 to 178941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,068 DEBUG Processing 475/1129 atomic regions from SNP 142307 to 142907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,068 DEBUG Processing 340/642 atomic regions from SNP 101799 to 102399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,205 DEBUG Processing 25/234 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:07,215 DEBUG Processing 495/1013 atomic regions from SNP 148244 to 148844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,314 DEBUG Processing 590/847 atomic regions from SNP 176896 to 177496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,324 DEBUG Processing 596/881 atomic regions from SNP 178641 to 179241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,387 DEBUG Processing 341/642 atomic regions from SNP 102099 to 102699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,412 DEBUG Processing 476/1129 atomic regions from SNP 142607 to 143207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,511 DEBUG Processing 26/234 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:07,541 DEBUG Processing 496/1013 atomic regions from SNP 148544 to 149144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,619 DEBUG Processing 591/847 atomic regions from SNP 177196 to 177796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,634 DEBUG Processing 597/881 atomic regions from SNP 178941 to 179541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,703 DEBUG Processing 342/642 atomic regions from SNP 102399 to 102999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,749 DEBUG Processing 477/1129 atomic regions from SNP 142907 to 143507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,816 DEBUG Processing 27/234 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:07,869 DEBUG Processing 497/1013 atomic regions from SNP 148844 to 149444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,941 DEBUG Processing 598/881 atomic regions from SNP 179241 to 179841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,956 DEBUG Processing 592/847 atomic regions from SNP 177496 to 178096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,020 DEBUG Processing 343/642 atomic regions from SNP 102699 to 103299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,089 DEBUG Processing 478/1129 atomic regions from SNP 143207 to 143807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,124 DEBUG Processing 28/234 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:08,197 DEBUG Processing 498/1013 atomic regions from SNP 149144 to 149744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,247 DEBUG Processing 599/881 atomic regions from SNP 179541 to 180141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,278 DEBUG Processing 593/847 atomic regions from SNP 177796 to 178396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,336 DEBUG Processing 344/642 atomic regions from SNP 102999 to 103599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,431 DEBUG Processing 29/234 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:08,451 DEBUG Processing 479/1129 atomic regions from SNP 143507 to 144107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,525 DEBUG Processing 499/1013 atomic regions from SNP 149444 to 150044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,550 DEBUG Processing 600/881 atomic regions from SNP 179841 to 180441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,606 DEBUG Processing 594/847 atomic regions from SNP 178096 to 178696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,650 DEBUG Processing 345/642 atomic regions from SNP 103299 to 103899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,735 DEBUG Processing 30/234 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:08,803 DEBUG Processing 480/1129 atomic regions from SNP 143807 to 144407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,851 DEBUG Processing 500/1013 atomic regions from SNP 149744 to 150344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,857 DEBUG Processing 601/881 atomic regions from SNP 180141 to 180741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,934 DEBUG Processing 595/847 atomic regions from SNP 178396 to 178996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,964 DEBUG Processing 346/642 atomic regions from SNP 103599 to 104199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,038 DEBUG Processing 31/234 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:09,156 DEBUG Processing 481/1129 atomic regions from SNP 144107 to 144707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,163 DEBUG Processing 602/881 atomic regions from SNP 180441 to 181041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,178 DEBUG Processing 501/1013 atomic regions from SNP 150044 to 150644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,256 DEBUG Processing 596/847 atomic regions from SNP 178696 to 179296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,282 DEBUG Processing 347/642 atomic regions from SNP 103899 to 104499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,342 DEBUG Processing 32/234 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:09,473 DEBUG Processing 603/881 atomic regions from SNP 180741 to 181341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,502 DEBUG Processing 482/1129 atomic regions from SNP 144407 to 145007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,508 DEBUG Processing 502/1013 atomic regions from SNP 150344 to 150944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,576 DEBUG Processing 597/847 atomic regions from SNP 178996 to 179596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,602 DEBUG Processing 348/642 atomic regions from SNP 104199 to 104799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,648 DEBUG Processing 33/234 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:09,779 DEBUG Processing 604/881 atomic regions from SNP 181041 to 181641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,836 DEBUG Processing 503/1013 atomic regions from SNP 150644 to 151244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,852 DEBUG Processing 483/1129 atomic regions from SNP 144707 to 145307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,881 DEBUG Processing 598/847 atomic regions from SNP 179296 to 179896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,923 DEBUG Processing 349/642 atomic regions from SNP 104499 to 105099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,953 DEBUG Processing 34/234 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:10,084 DEBUG Processing 605/881 atomic regions from SNP 181341 to 181941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,164 DEBUG Processing 504/1013 atomic regions from SNP 150944 to 151544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,195 DEBUG Processing 599/847 atomic regions from SNP 179596 to 180196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,218 DEBUG Processing 484/1129 atomic regions from SNP 145007 to 145607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,242 DEBUG Processing 350/642 atomic regions from SNP 104799 to 105399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,260 DEBUG Processing 35/234 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:10,386 DEBUG Processing 606/881 atomic regions from SNP 181641 to 182241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,491 DEBUG Processing 505/1013 atomic regions from SNP 151244 to 151844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,501 DEBUG Processing 600/847 atomic regions from SNP 179896 to 180496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,561 DEBUG Processing 351/642 atomic regions from SNP 105099 to 105699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,569 DEBUG Processing 36/234 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:10,596 DEBUG Processing 485/1129 atomic regions from SNP 145307 to 145907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,686 DEBUG Processing 607/881 atomic regions from SNP 181941 to 182541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,808 DEBUG Processing 601/847 atomic regions from SNP 180196 to 180796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,818 DEBUG Processing 506/1013 atomic regions from SNP 151544 to 152144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,881 DEBUG Processing 37/234 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:10,886 DEBUG Processing 352/642 atomic regions from SNP 105399 to 105999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,965 DEBUG Processing 486/1129 atomic regions from SNP 145607 to 146207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,987 DEBUG Processing 608/881 atomic regions from SNP 182241 to 182841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,113 DEBUG Processing 602/847 atomic regions from SNP 180496 to 181096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,146 DEBUG Processing 507/1013 atomic regions from SNP 151844 to 152444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,194 DEBUG Processing 38/234 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:11,207 DEBUG Processing 353/642 atomic regions from SNP 105699 to 106299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,291 DEBUG Processing 609/881 atomic regions from SNP 182541 to 183141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,328 DEBUG Processing 487/1129 atomic regions from SNP 145907 to 146507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,418 DEBUG Processing 603/847 atomic regions from SNP 180796 to 181396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,471 DEBUG Processing 508/1013 atomic regions from SNP 152144 to 152744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,502 DEBUG Processing 39/234 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:11,525 DEBUG Processing 354/642 atomic regions from SNP 105999 to 106599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,595 DEBUG Processing 610/881 atomic regions from SNP 182841 to 183441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,667 DEBUG Processing 488/1129 atomic regions from SNP 146207 to 146807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,723 DEBUG Processing 604/847 atomic regions from SNP 181096 to 181696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,796 DEBUG Processing 509/1013 atomic regions from SNP 152444 to 153044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,810 DEBUG Processing 40/234 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:11,844 DEBUG Processing 355/642 atomic regions from SNP 106299 to 106899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,898 DEBUG Processing 611/881 atomic regions from SNP 183141 to 183741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,016 DEBUG Processing 489/1129 atomic regions from SNP 146507 to 147107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,040 DEBUG Processing 605/847 atomic regions from SNP 181396 to 181996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,121 DEBUG Processing 41/234 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:12,124 DEBUG Processing 510/1013 atomic regions from SNP 152744 to 153344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,162 DEBUG Processing 356/642 atomic regions from SNP 106599 to 107199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,200 DEBUG Processing 612/881 atomic regions from SNP 183441 to 184041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,380 DEBUG Processing 606/847 atomic regions from SNP 181696 to 182296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,382 DEBUG Processing 490/1129 atomic regions from SNP 146807 to 147407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,433 DEBUG Processing 42/234 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:12,478 DEBUG Processing 511/1013 atomic regions from SNP 153044 to 153644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,488 DEBUG Processing 357/642 atomic regions from SNP 106899 to 107499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,505 DEBUG Processing 613/881 atomic regions from SNP 183741 to 184341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,705 DEBUG Processing 607/847 atomic regions from SNP 181996 to 182596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,742 DEBUG Processing 43/234 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:12,745 DEBUG Processing 491/1129 atomic regions from SNP 147107 to 147707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,813 DEBUG Processing 614/881 atomic regions from SNP 184041 to 184641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,818 DEBUG Processing 512/1013 atomic regions from SNP 153344 to 153944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,834 DEBUG Processing 358/642 atomic regions from SNP 107199 to 107799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,010 DEBUG Processing 608/847 atomic regions from SNP 182296 to 182896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,052 DEBUG Processing 44/234 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:13,099 DEBUG Processing 492/1129 atomic regions from SNP 147407 to 148007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,120 DEBUG Processing 615/881 atomic regions from SNP 184341 to 184941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,173 DEBUG Processing 513/1013 atomic regions from SNP 153644 to 154244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,178 DEBUG Processing 359/642 atomic regions from SNP 107499 to 108099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,313 DEBUG Processing 609/847 atomic regions from SNP 182596 to 183196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,356 DEBUG Processing 45/234 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:13,431 DEBUG Processing 616/881 atomic regions from SNP 184641 to 185241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,471 DEBUG Processing 493/1129 atomic regions from SNP 147707 to 148307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,524 DEBUG Processing 360/642 atomic regions from SNP 107799 to 108399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,537 DEBUG Processing 514/1013 atomic regions from SNP 153944 to 154544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,614 DEBUG Processing 610/847 atomic regions from SNP 182896 to 183496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,661 DEBUG Processing 46/234 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:13,737 DEBUG Processing 617/881 atomic regions from SNP 184941 to 185541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,837 DEBUG Processing 494/1129 atomic regions from SNP 148007 to 148607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,865 DEBUG Processing 361/642 atomic regions from SNP 108099 to 108699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,902 DEBUG Processing 515/1013 atomic regions from SNP 154244 to 154844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,920 DEBUG Processing 611/847 atomic regions from SNP 183196 to 183796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,968 DEBUG Processing 47/234 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:14,039 DEBUG Processing 618/881 atomic regions from SNP 185241 to 185841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,197 DEBUG Processing 495/1129 atomic regions from SNP 148307 to 148907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,214 DEBUG Processing 362/642 atomic regions from SNP 108399 to 108999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,227 DEBUG Processing 612/847 atomic regions from SNP 183496 to 184096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,255 DEBUG Processing 516/1013 atomic regions from SNP 154544 to 155144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,299 DEBUG Processing 48/234 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:14,340 DEBUG Processing 619/881 atomic regions from SNP 185541 to 186141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,534 DEBUG Processing 613/847 atomic regions from SNP 183796 to 184396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,545 DEBUG Processing 496/1129 atomic regions from SNP 148607 to 149207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,550 DEBUG Processing 363/642 atomic regions from SNP 108699 to 109299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,608 DEBUG Processing 49/234 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:14,610 DEBUG Processing 517/1013 atomic regions from SNP 154844 to 155444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,642 DEBUG Processing 620/881 atomic regions from SNP 185841 to 186441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,842 DEBUG Processing 614/847 atomic regions from SNP 184096 to 184696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,889 DEBUG Processing 364/642 atomic regions from SNP 108999 to 109599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,913 DEBUG Processing 497/1129 atomic regions from SNP 148907 to 149507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,918 DEBUG Processing 50/234 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:14,949 DEBUG Processing 621/881 atomic regions from SNP 186141 to 186741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,957 DEBUG Processing 518/1013 atomic regions from SNP 155144 to 155744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,161 DEBUG Processing 615/847 atomic regions from SNP 184396 to 184996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,236 DEBUG Processing 51/234 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:15,241 DEBUG Processing 365/642 atomic regions from SNP 109299 to 109899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,260 DEBUG Processing 622/881 atomic regions from SNP 186441 to 187041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,274 DEBUG Processing 498/1129 atomic regions from SNP 149207 to 149807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,295 DEBUG Processing 519/1013 atomic regions from SNP 155444 to 156044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,495 DEBUG Processing 616/847 atomic regions from SNP 184696 to 185296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,549 DEBUG Processing 52/234 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:15,569 DEBUG Processing 623/881 atomic regions from SNP 186741 to 187341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,596 DEBUG Processing 366/642 atomic regions from SNP 109599 to 110199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,622 DEBUG Processing 499/1129 atomic regions from SNP 149507 to 150107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,660 DEBUG Processing 520/1013 atomic regions from SNP 155744 to 156344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,830 DEBUG Processing 617/847 atomic regions from SNP 184996 to 185596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,858 DEBUG Processing 53/234 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:15,879 DEBUG Processing 624/881 atomic regions from SNP 187041 to 187641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,942 DEBUG Processing 367/642 atomic regions from SNP 109899 to 110499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,961 DEBUG Processing 500/1129 atomic regions from SNP 149807 to 150407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,008 DEBUG Processing 521/1013 atomic regions from SNP 156044 to 156644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,168 DEBUG Processing 54/234 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:16,169 DEBUG Processing 618/847 atomic regions from SNP 185296 to 185896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,186 DEBUG Processing 625/881 atomic regions from SNP 187341 to 187941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,269 DEBUG Processing 368/642 atomic regions from SNP 110199 to 110799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,304 DEBUG Processing 501/1129 atomic regions from SNP 150107 to 150707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,351 DEBUG Processing 522/1013 atomic regions from SNP 156344 to 156944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,478 DEBUG Processing 55/234 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:16,495 DEBUG Processing 626/881 atomic regions from SNP 187641 to 188241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,504 DEBUG Processing 619/847 atomic regions from SNP 185596 to 186196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,589 DEBUG Processing 369/642 atomic regions from SNP 110499 to 111099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,645 DEBUG Processing 502/1129 atomic regions from SNP 150407 to 151007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,711 DEBUG Processing 523/1013 atomic regions from SNP 156644 to 157244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,786 DEBUG Processing 56/234 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:16,801 DEBUG Processing 627/881 atomic regions from SNP 187941 to 188541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,832 DEBUG Processing 620/847 atomic regions from SNP 185896 to 186496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,908 DEBUG Processing 370/642 atomic regions from SNP 110799 to 111399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,982 DEBUG Processing 503/1129 atomic regions from SNP 150707 to 151307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,043 DEBUG Processing 524/1013 atomic regions from SNP 156944 to 157544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,098 DEBUG Processing 57/234 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:17,106 DEBUG Processing 628/881 atomic regions from SNP 188241 to 188841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,171 DEBUG Processing 621/847 atomic regions from SNP 186196 to 186796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,228 DEBUG Processing 371/642 atomic regions from SNP 111099 to 111699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,321 DEBUG Processing 504/1129 atomic regions from SNP 151007 to 151607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,368 DEBUG Processing 525/1013 atomic regions from SNP 157244 to 157844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,405 DEBUG Processing 58/234 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:17,415 DEBUG Processing 629/881 atomic regions from SNP 188541 to 189141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,502 DEBUG Processing 622/847 atomic regions from SNP 186496 to 187096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,564 DEBUG Processing 372/642 atomic regions from SNP 111399 to 111999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,662 DEBUG Processing 505/1129 atomic regions from SNP 151307 to 151907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,693 DEBUG Processing 526/1013 atomic regions from SNP 157544 to 158144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,712 DEBUG Processing 59/234 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:17,726 DEBUG Processing 630/881 atomic regions from SNP 188841 to 189441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,836 DEBUG Processing 623/847 atomic regions from SNP 186796 to 187396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,888 DEBUG Processing 373/642 atomic regions from SNP 111699 to 112299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,002 DEBUG Processing 506/1129 atomic regions from SNP 151607 to 152207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,020 DEBUG Processing 527/1013 atomic regions from SNP 157844 to 158444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,035 DEBUG Processing 60/234 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:18,052 DEBUG Processing 631/881 atomic regions from SNP 189141 to 189741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,174 DEBUG Processing 624/847 atomic regions from SNP 187096 to 187696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,218 DEBUG Processing 374/642 atomic regions from SNP 111999 to 112599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,345 DEBUG Processing 61/234 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:18,346 DEBUG Processing 507/1129 atomic regions from SNP 151907 to 152507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,352 DEBUG Processing 528/1013 atomic regions from SNP 158144 to 158744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,364 DEBUG Processing 632/881 atomic regions from SNP 189441 to 190041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,515 DEBUG Processing 625/847 atomic regions from SNP 187396 to 187996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,551 DEBUG Processing 375/642 atomic regions from SNP 112299 to 112899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,658 DEBUG Processing 62/234 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:18,674 DEBUG Processing 633/881 atomic regions from SNP 189741 to 190341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,686 DEBUG Processing 529/1013 atomic regions from SNP 158444 to 159044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,694 DEBUG Processing 508/1129 atomic regions from SNP 152207 to 152807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,857 DEBUG Processing 626/847 atomic regions from SNP 187696 to 188296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,886 DEBUG Processing 376/642 atomic regions from SNP 112599 to 113199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,966 DEBUG Processing 63/234 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:19,006 DEBUG Processing 634/881 atomic regions from SNP 190041 to 190641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,015 DEBUG Processing 530/1013 atomic regions from SNP 158744 to 159344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,065 DEBUG Processing 509/1129 atomic regions from SNP 152507 to 153107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,198 DEBUG Processing 627/847 atomic regions from SNP 187996 to 188596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,225 DEBUG Processing 377/642 atomic regions from SNP 112899 to 113499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,274 DEBUG Processing 64/234 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:19,343 DEBUG Processing 531/1013 atomic regions from SNP 159044 to 159644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,346 DEBUG Processing 635/881 atomic regions from SNP 190341 to 190941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,432 DEBUG Processing 510/1129 atomic regions from SNP 152807 to 153407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,510 DEBUG Processing 628/847 atomic regions from SNP 188296 to 188896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,544 DEBUG Processing 378/642 atomic regions from SNP 113199 to 113799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,578 DEBUG Processing 65/234 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:19,670 DEBUG Processing 532/1013 atomic regions from SNP 159344 to 159944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,679 DEBUG Processing 636/881 atomic regions from SNP 190641 to 191241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,777 DEBUG Processing 511/1129 atomic regions from SNP 153107 to 153707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,825 DEBUG Processing 629/847 atomic regions from SNP 188596 to 189196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,861 DEBUG Processing 379/642 atomic regions from SNP 113499 to 114099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,884 DEBUG Processing 66/234 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:19,996 DEBUG Processing 533/1013 atomic regions from SNP 159644 to 160244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,013 DEBUG Processing 637/881 atomic regions from SNP 190941 to 191541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,118 DEBUG Processing 512/1129 atomic regions from SNP 153407 to 154007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,140 DEBUG Processing 630/847 atomic regions from SNP 188896 to 189496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,179 DEBUG Processing 380/642 atomic regions from SNP 113799 to 114399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,191 DEBUG Processing 67/234 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:20,319 DEBUG Processing 534/1013 atomic regions from SNP 159944 to 160544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,331 DEBUG Processing 638/881 atomic regions from SNP 191241 to 191841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,445 DEBUG Processing 631/847 atomic regions from SNP 189196 to 189796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,457 DEBUG Processing 513/1129 atomic regions from SNP 153707 to 154307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,498 DEBUG Processing 381/642 atomic regions from SNP 114099 to 114699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,499 DEBUG Processing 68/234 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:20,635 DEBUG Processing 639/881 atomic regions from SNP 191541 to 192141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,648 DEBUG Processing 535/1013 atomic regions from SNP 160244 to 160844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,750 DEBUG Processing 632/847 atomic regions from SNP 189496 to 190096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,797 DEBUG Processing 514/1129 atomic regions from SNP 154007 to 154607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,811 DEBUG Processing 69/234 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:20,818 DEBUG Processing 382/642 atomic regions from SNP 114399 to 114999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,939 DEBUG Processing 640/881 atomic regions from SNP 191841 to 192441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,974 DEBUG Processing 536/1013 atomic regions from SNP 160544 to 161144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,058 DEBUG Processing 633/847 atomic regions from SNP 189796 to 190396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,121 DEBUG Processing 70/234 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:21,138 DEBUG Processing 383/642 atomic regions from SNP 114699 to 115299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,149 DEBUG Processing 515/1129 atomic regions from SNP 154307 to 154907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,245 DEBUG Processing 641/881 atomic regions from SNP 192141 to 192741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,302 DEBUG Processing 537/1013 atomic regions from SNP 160844 to 161444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,364 DEBUG Processing 634/847 atomic regions from SNP 190096 to 190696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,433 DEBUG Processing 71/234 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:21,459 DEBUG Processing 384/642 atomic regions from SNP 114999 to 115599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,522 DEBUG Processing 516/1129 atomic regions from SNP 154607 to 155207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,549 DEBUG Processing 642/881 atomic regions from SNP 192441 to 193041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,628 DEBUG Processing 538/1013 atomic regions from SNP 161144 to 161744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,668 DEBUG Processing 635/847 atomic regions from SNP 190396 to 190996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,742 DEBUG Processing 72/234 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:21,776 DEBUG Processing 385/642 atomic regions from SNP 115299 to 115899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,856 DEBUG Processing 643/881 atomic regions from SNP 192741 to 193341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,898 DEBUG Processing 517/1129 atomic regions from SNP 154907 to 155507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,954 DEBUG Processing 539/1013 atomic regions from SNP 161444 to 162044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,987 DEBUG Processing 636/847 atomic regions from SNP 190696 to 191296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,048 DEBUG Processing 73/234 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:22,089 DEBUG Processing 386/642 atomic regions from SNP 115599 to 116199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,158 DEBUG Processing 644/881 atomic regions from SNP 193041 to 193641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,266 DEBUG Processing 518/1129 atomic regions from SNP 155207 to 155807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,278 DEBUG Processing 540/1013 atomic regions from SNP 161744 to 162344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,316 DEBUG Processing 637/847 atomic regions from SNP 190996 to 191596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,355 DEBUG Processing 74/234 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:22,401 DEBUG Processing 387/642 atomic regions from SNP 115899 to 116499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,459 DEBUG Processing 645/881 atomic regions from SNP 193341 to 193941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,607 DEBUG Processing 541/1013 atomic regions from SNP 162044 to 162644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,612 DEBUG Processing 519/1129 atomic regions from SNP 155507 to 156107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,651 DEBUG Processing 638/847 atomic regions from SNP 191296 to 191896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,666 DEBUG Processing 75/234 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:22,716 DEBUG Processing 388/642 atomic regions from SNP 116199 to 116799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,761 DEBUG Processing 646/881 atomic regions from SNP 193641 to 194241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,934 DEBUG Processing 542/1013 atomic regions from SNP 162344 to 162944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,962 DEBUG Processing 520/1129 atomic regions from SNP 155807 to 156407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,964 DEBUG Processing 639/847 atomic regions from SNP 191596 to 192196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,978 DEBUG Processing 76/234 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:23,047 DEBUG Processing 389/642 atomic regions from SNP 116499 to 117099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,062 DEBUG Processing 647/881 atomic regions from SNP 193941 to 194541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,259 DEBUG Processing 543/1013 atomic regions from SNP 162644 to 163244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,275 DEBUG Processing 640/847 atomic regions from SNP 191896 to 192496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,293 DEBUG Processing 77/234 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:23,329 DEBUG Processing 521/1129 atomic regions from SNP 156107 to 156707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,350 DEBUG Processing 390/642 atomic regions from SNP 116799 to 117399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,368 DEBUG Processing 648/881 atomic regions from SNP 194241 to 194841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,587 DEBUG Processing 641/847 atomic regions from SNP 192196 to 192796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,588 DEBUG Processing 544/1013 atomic regions from SNP 162944 to 163544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,606 DEBUG Processing 78/234 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:23,652 DEBUG Processing 391/642 atomic regions from SNP 117099 to 117699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,675 DEBUG Processing 649/881 atomic regions from SNP 194541 to 195141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,692 DEBUG Processing 522/1129 atomic regions from SNP 156407 to 157007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,912 DEBUG Processing 642/847 atomic regions from SNP 192496 to 193096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,919 DEBUG Processing 79/234 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:23,920 DEBUG Processing 545/1013 atomic regions from SNP 163244 to 163844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,965 DEBUG Processing 392/642 atomic regions from SNP 117399 to 117999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,985 DEBUG Processing 650/881 atomic regions from SNP 194841 to 195441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,039 DEBUG Processing 523/1129 atomic regions from SNP 156707 to 157307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,233 DEBUG Processing 643/847 atomic regions from SNP 192796 to 193396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,255 DEBUG Processing 80/234 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:24,257 DEBUG Processing 546/1013 atomic regions from SNP 163544 to 164144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,283 DEBUG Processing 393/642 atomic regions from SNP 117699 to 118299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,298 DEBUG Processing 651/881 atomic regions from SNP 195141 to 195741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,385 DEBUG Processing 524/1129 atomic regions from SNP 157007 to 157607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,540 DEBUG Processing 644/847 atomic regions from SNP 193096 to 193696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,583 DEBUG Processing 81/234 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:24,590 DEBUG Processing 547/1013 atomic regions from SNP 163844 to 164444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,601 DEBUG Processing 394/642 atomic regions from SNP 117999 to 118599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,611 DEBUG Processing 652/881 atomic regions from SNP 195441 to 196041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,732 DEBUG Processing 525/1129 atomic regions from SNP 157307 to 157907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,862 DEBUG Processing 645/847 atomic regions from SNP 193396 to 193996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,897 DEBUG Processing 82/234 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:24,922 DEBUG Processing 395/642 atomic regions from SNP 118299 to 118899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,924 DEBUG Processing 653/881 atomic regions from SNP 195741 to 196341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,925 DEBUG Processing 548/1013 atomic regions from SNP 164144 to 164744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,100 DEBUG Processing 526/1129 atomic regions from SNP 157607 to 158207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,182 DEBUG Processing 646/847 atomic regions from SNP 193696 to 194296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,209 DEBUG Processing 83/234 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:25,240 DEBUG Processing 654/881 atomic regions from SNP 196041 to 196641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,251 DEBUG Processing 396/642 atomic regions from SNP 118599 to 119199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,261 DEBUG Processing 549/1013 atomic regions from SNP 164444 to 165044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,457 DEBUG Processing 527/1129 atomic regions from SNP 157907 to 158507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,489 DEBUG Processing 647/847 atomic regions from SNP 193996 to 194596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,522 DEBUG Processing 84/234 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:25,551 DEBUG Processing 655/881 atomic regions from SNP 196341 to 196941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,570 DEBUG Processing 397/642 atomic regions from SNP 118899 to 119499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,592 DEBUG Processing 550/1013 atomic regions from SNP 164744 to 165344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,797 DEBUG Processing 648/847 atomic regions from SNP 194296 to 194896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,814 DEBUG Processing 528/1129 atomic regions from SNP 158207 to 158807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,835 DEBUG Processing 85/234 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:25,862 DEBUG Processing 656/881 atomic regions from SNP 196641 to 197241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,884 DEBUG Processing 398/642 atomic regions from SNP 119199 to 119799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,921 DEBUG Processing 551/1013 atomic regions from SNP 165044 to 165644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,102 DEBUG Processing 649/847 atomic regions from SNP 194596 to 195196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,149 DEBUG Processing 86/234 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:26,175 DEBUG Processing 657/881 atomic regions from SNP 196941 to 197541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,187 DEBUG Processing 529/1129 atomic regions from SNP 158507 to 159107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,201 DEBUG Processing 399/642 atomic regions from SNP 119499 to 120099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,248 DEBUG Processing 552/1013 atomic regions from SNP 165344 to 165944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,401 DEBUG Processing 650/847 atomic regions from SNP 194896 to 195496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,460 DEBUG Processing 87/234 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:26,487 DEBUG Processing 658/881 atomic regions from SNP 197241 to 197841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,518 DEBUG Processing 400/642 atomic regions from SNP 119799 to 120399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,555 DEBUG Processing 530/1129 atomic regions from SNP 158807 to 159407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,573 DEBUG Processing 553/1013 atomic regions from SNP 165644 to 166244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,702 DEBUG Processing 651/847 atomic regions from SNP 195196 to 195796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,772 DEBUG Processing 88/234 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:26,798 DEBUG Processing 659/881 atomic regions from SNP 197541 to 198141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,835 DEBUG Processing 401/642 atomic regions from SNP 120099 to 120699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,899 DEBUG Processing 554/1013 atomic regions from SNP 165944 to 166544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,929 DEBUG Processing 531/1129 atomic regions from SNP 159107 to 159707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,003 DEBUG Processing 652/847 atomic regions from SNP 195496 to 196096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,080 DEBUG Processing 89/234 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:27,104 DEBUG Processing 660/881 atomic regions from SNP 197841 to 198441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,150 DEBUG Processing 402/642 atomic regions from SNP 120399 to 120999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,225 DEBUG Processing 555/1013 atomic regions from SNP 166244 to 166844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,304 DEBUG Processing 532/1129 atomic regions from SNP 159407 to 160007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,307 DEBUG Processing 653/847 atomic regions from SNP 195796 to 196396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,387 DEBUG Processing 90/234 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:27,406 DEBUG Processing 661/881 atomic regions from SNP 198141 to 198741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,461 DEBUG Processing 403/642 atomic regions from SNP 120699 to 121299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,554 DEBUG Processing 556/1013 atomic regions from SNP 166544 to 167144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,616 DEBUG Processing 654/847 atomic regions from SNP 196096 to 196696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,651 DEBUG Processing 533/1129 atomic regions from SNP 159707 to 160307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,695 DEBUG Processing 91/234 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:27,712 DEBUG Processing 662/881 atomic regions from SNP 198441 to 199041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,791 DEBUG Processing 404/642 atomic regions from SNP 120999 to 121599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,878 DEBUG Processing 557/1013 atomic regions from SNP 166844 to 167444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,924 DEBUG Processing 655/847 atomic regions from SNP 196396 to 196996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,992 DEBUG Processing 534/1129 atomic regions from SNP 160007 to 160607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,026 DEBUG Processing 92/234 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:28,037 DEBUG Processing 663/881 atomic regions from SNP 198741 to 199341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,130 DEBUG Processing 405/642 atomic regions from SNP 121299 to 121899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,204 DEBUG Processing 558/1013 atomic regions from SNP 167144 to 167744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,252 DEBUG Processing 656/847 atomic regions from SNP 196696 to 197296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,334 DEBUG Processing 535/1129 atomic regions from SNP 160307 to 160907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,357 DEBUG Processing 93/234 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:28,362 DEBUG Processing 664/881 atomic regions from SNP 199041 to 199641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,440 DEBUG Processing 406/642 atomic regions from SNP 121599 to 122199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,530 DEBUG Processing 559/1013 atomic regions from SNP 167444 to 168044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,556 DEBUG Processing 657/847 atomic regions from SNP 196996 to 197596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,667 DEBUG Processing 94/234 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:28,671 DEBUG Processing 665/881 atomic regions from SNP 199341 to 199941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,674 DEBUG Processing 536/1129 atomic regions from SNP 160607 to 161207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,755 DEBUG Processing 407/642 atomic regions from SNP 121899 to 122499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,856 DEBUG Processing 560/1013 atomic regions from SNP 167744 to 168344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,889 DEBUG Processing 658/847 atomic regions from SNP 197296 to 197896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,978 DEBUG Processing 95/234 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:28,982 DEBUG Processing 666/881 atomic regions from SNP 199641 to 200241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,016 DEBUG Processing 537/1129 atomic regions from SNP 160907 to 161507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,088 DEBUG Processing 408/642 atomic regions from SNP 122199 to 122799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,182 DEBUG Processing 561/1013 atomic regions from SNP 168044 to 168644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,225 DEBUG Processing 659/847 atomic regions from SNP 197596 to 198196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,288 DEBUG Processing 96/234 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:29,294 DEBUG Processing 667/881 atomic regions from SNP 199941 to 200541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,353 DEBUG Processing 538/1129 atomic regions from SNP 161207 to 161807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,431 DEBUG Processing 409/642 atomic regions from SNP 122499 to 123099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,505 DEBUG Processing 562/1013 atomic regions from SNP 168344 to 168944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,558 DEBUG Processing 660/847 atomic regions from SNP 197896 to 198496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,596 DEBUG Processing 97/234 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:29,610 DEBUG Processing 668/881 atomic regions from SNP 200241 to 200841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,687 DEBUG Processing 539/1129 atomic regions from SNP 161507 to 162107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,774 DEBUG Processing 410/642 atomic regions from SNP 122799 to 123399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,830 DEBUG Processing 563/1013 atomic regions from SNP 168644 to 169244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,867 DEBUG Processing 661/847 atomic regions from SNP 198196 to 198796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,904 DEBUG Processing 98/234 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:29,942 DEBUG Processing 669/881 atomic regions from SNP 200541 to 201141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,023 DEBUG Processing 540/1129 atomic regions from SNP 161807 to 162407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,107 DEBUG Processing 411/642 atomic regions from SNP 123099 to 123699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,156 DEBUG Processing 564/1013 atomic regions from SNP 168944 to 169544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,186 DEBUG Processing 662/847 atomic regions from SNP 198496 to 199096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,212 DEBUG Processing 99/234 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:30,283 DEBUG Processing 670/881 atomic regions from SNP 200841 to 201441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,363 DEBUG Processing 541/1129 atomic regions from SNP 162107 to 162707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,420 DEBUG Processing 412/642 atomic regions from SNP 123399 to 123999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,483 DEBUG Processing 565/1013 atomic regions from SNP 169244 to 169844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,520 DEBUG Processing 100/234 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:30,524 DEBUG Processing 663/847 atomic regions from SNP 198796 to 199396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,593 DEBUG Processing 671/881 atomic regions from SNP 201141 to 201741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,706 DEBUG Processing 542/1129 atomic regions from SNP 162407 to 163007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,754 DEBUG Processing 413/642 atomic regions from SNP 123699 to 124299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,811 DEBUG Processing 566/1013 atomic regions from SNP 169544 to 170144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,829 DEBUG Processing 101/234 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:30,857 DEBUG Processing 664/847 atomic regions from SNP 199096 to 199696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,898 DEBUG Processing 672/881 atomic regions from SNP 201441 to 202041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,043 DEBUG Processing 543/1129 atomic regions from SNP 162707 to 163307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,095 DEBUG Processing 414/642 atomic regions from SNP 123999 to 124599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,138 DEBUG Processing 102/234 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:31,143 DEBUG Processing 567/1013 atomic regions from SNP 169844 to 170444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,192 DEBUG Processing 665/847 atomic regions from SNP 199396 to 199996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,202 DEBUG Processing 673/881 atomic regions from SNP 201741 to 202341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,380 DEBUG Processing 544/1129 atomic regions from SNP 163007 to 163607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,418 DEBUG Processing 415/642 atomic regions from SNP 124299 to 124899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,449 DEBUG Processing 103/234 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:31,478 DEBUG Processing 568/1013 atomic regions from SNP 170144 to 170744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,513 DEBUG Processing 674/881 atomic regions from SNP 202041 to 202641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,527 DEBUG Processing 666/847 atomic regions from SNP 199696 to 200296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,719 DEBUG Processing 545/1129 atomic regions from SNP 163307 to 163907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,757 DEBUG Processing 416/642 atomic regions from SNP 124599 to 125199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,760 DEBUG Processing 104/234 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:31,810 DEBUG Processing 569/1013 atomic regions from SNP 170444 to 171044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,821 DEBUG Processing 675/881 atomic regions from SNP 202341 to 202941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,855 DEBUG Processing 667/847 atomic regions from SNP 199996 to 200596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,054 DEBUG Processing 546/1129 atomic regions from SNP 163607 to 164207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,070 DEBUG Processing 105/234 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:32,107 DEBUG Processing 417/642 atomic regions from SNP 124899 to 125499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,139 DEBUG Processing 570/1013 atomic regions from SNP 170744 to 171344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,145 DEBUG Processing 676/881 atomic regions from SNP 202641 to 203241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,177 DEBUG Processing 668/847 atomic regions from SNP 200296 to 200896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,382 DEBUG Processing 106/234 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:32,398 DEBUG Processing 547/1129 atomic regions from SNP 163907 to 164507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,448 DEBUG Processing 418/642 atomic regions from SNP 125199 to 125799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,470 DEBUG Processing 677/881 atomic regions from SNP 202941 to 203541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,472 DEBUG Processing 571/1013 atomic regions from SNP 171044 to 171644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,508 DEBUG Processing 669/847 atomic regions from SNP 200596 to 201196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,691 DEBUG Processing 107/234 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:32,738 DEBUG Processing 548/1129 atomic regions from SNP 164207 to 164807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,776 DEBUG Processing 419/642 atomic regions from SNP 125499 to 126099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,786 DEBUG Processing 678/881 atomic regions from SNP 203241 to 203841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,802 DEBUG Processing 572/1013 atomic regions from SNP 171344 to 171944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,845 DEBUG Processing 670/847 atomic regions from SNP 200896 to 201496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,998 DEBUG Processing 108/234 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:33,079 DEBUG Processing 549/1129 atomic regions from SNP 164507 to 165107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,095 DEBUG Processing 679/881 atomic regions from SNP 203541 to 204141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,111 DEBUG Processing 420/642 atomic regions from SNP 125799 to 126399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,134 DEBUG Processing 573/1013 atomic regions from SNP 171644 to 172244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,177 DEBUG Processing 671/847 atomic regions from SNP 201196 to 201796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,298 DEBUG Processing 109/234 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:33,405 DEBUG Processing 680/881 atomic regions from SNP 203841 to 204441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,422 DEBUG Processing 550/1129 atomic regions from SNP 164807 to 165407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,463 DEBUG Processing 574/1013 atomic regions from SNP 171944 to 172544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,464 DEBUG Processing 421/642 atomic regions from SNP 126099 to 126699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,506 DEBUG Processing 672/847 atomic regions from SNP 201496 to 202096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,604 DEBUG Processing 110/234 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:33,711 DEBUG Processing 681/881 atomic regions from SNP 204141 to 204741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,766 DEBUG Processing 551/1129 atomic regions from SNP 165107 to 165707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,795 DEBUG Processing 575/1013 atomic regions from SNP 172244 to 172844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,801 DEBUG Processing 422/642 atomic regions from SNP 126399 to 126999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,835 DEBUG Processing 673/847 atomic regions from SNP 201796 to 202396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,906 DEBUG Processing 111/234 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:34,014 DEBUG Processing 682/881 atomic regions from SNP 204441 to 205041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,110 DEBUG Processing 552/1129 atomic regions from SNP 165407 to 166007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,122 DEBUG Processing 576/1013 atomic regions from SNP 172544 to 173144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,139 DEBUG Processing 423/642 atomic regions from SNP 126699 to 127299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,175 DEBUG Processing 674/847 atomic regions from SNP 202096 to 202696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,210 DEBUG Processing 112/234 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:34,314 DEBUG Processing 683/881 atomic regions from SNP 204741 to 205341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,456 DEBUG Processing 577/1013 atomic regions from SNP 172844 to 173444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,468 DEBUG Processing 553/1129 atomic regions from SNP 165707 to 166307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,482 DEBUG Processing 424/642 atomic regions from SNP 126999 to 127599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,509 DEBUG Processing 675/847 atomic regions from SNP 202396 to 202996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,518 DEBUG Processing 113/234 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:34,614 DEBUG Processing 684/881 atomic regions from SNP 205041 to 205641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,786 DEBUG Processing 578/1013 atomic regions from SNP 173144 to 173744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,811 DEBUG Processing 554/1129 atomic regions from SNP 166007 to 166607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,826 DEBUG Processing 425/642 atomic regions from SNP 127299 to 127899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,830 DEBUG Processing 114/234 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:34,843 DEBUG Processing 676/847 atomic regions from SNP 202696 to 203296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,911 DEBUG Processing 685/881 atomic regions from SNP 205341 to 205941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,113 DEBUG Processing 579/1013 atomic regions from SNP 173444 to 174044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,143 DEBUG Processing 115/234 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:35,150 DEBUG Processing 426/642 atomic regions from SNP 127599 to 128199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,156 DEBUG Processing 555/1129 atomic regions from SNP 166307 to 166907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,176 DEBUG Processing 677/847 atomic regions from SNP 202996 to 203596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,214 DEBUG Processing 686/881 atomic regions from SNP 205641 to 206241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,442 DEBUG Processing 580/1013 atomic regions from SNP 173744 to 174344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,456 DEBUG Processing 116/234 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:35,473 DEBUG Processing 427/642 atomic regions from SNP 127899 to 128499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,506 DEBUG Processing 678/847 atomic regions from SNP 203296 to 203896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,506 DEBUG Processing 556/1129 atomic regions from SNP 166607 to 167207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,520 DEBUG Processing 687/881 atomic regions from SNP 205941 to 206541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,769 DEBUG Processing 117/234 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:35,775 DEBUG Processing 581/1013 atomic regions from SNP 174044 to 174644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,808 DEBUG Processing 428/642 atomic regions from SNP 128199 to 128799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,821 DEBUG Processing 679/847 atomic regions from SNP 203596 to 204196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,830 DEBUG Processing 688/881 atomic regions from SNP 206241 to 206841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,851 DEBUG Processing 557/1129 atomic regions from SNP 166907 to 167507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,083 DEBUG Processing 118/234 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:36,110 DEBUG Processing 582/1013 atomic regions from SNP 174344 to 174944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,141 DEBUG Processing 689/881 atomic regions from SNP 206541 to 207141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,162 DEBUG Processing 680/847 atomic regions from SNP 203896 to 204496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,166 DEBUG Processing 429/642 atomic regions from SNP 128499 to 129099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,201 DEBUG Processing 558/1129 atomic regions from SNP 167207 to 167807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,390 DEBUG Processing 119/234 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:36,443 DEBUG Processing 583/1013 atomic regions from SNP 174644 to 175244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,450 DEBUG Processing 690/881 atomic regions from SNP 206841 to 207441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,511 DEBUG Processing 681/847 atomic regions from SNP 204196 to 204796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,514 DEBUG Processing 430/642 atomic regions from SNP 128799 to 129399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,546 DEBUG Processing 559/1129 atomic regions from SNP 167507 to 168107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,697 DEBUG Processing 120/234 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:36,759 DEBUG Processing 691/881 atomic regions from SNP 207141 to 207741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,789 DEBUG Processing 584/1013 atomic regions from SNP 174944 to 175544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,848 DEBUG Processing 431/642 atomic regions from SNP 129099 to 129699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,849 DEBUG Processing 682/847 atomic regions from SNP 204496 to 205096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,889 DEBUG Processing 560/1129 atomic regions from SNP 167807 to 168407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,007 DEBUG Processing 121/234 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:37,063 DEBUG Processing 692/881 atomic regions from SNP 207441 to 208041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,142 DEBUG Processing 585/1013 atomic regions from SNP 175244 to 175844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,165 DEBUG Processing 432/642 atomic regions from SNP 129399 to 129999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,195 DEBUG Processing 683/847 atomic regions from SNP 204796 to 205396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,232 DEBUG Processing 561/1129 atomic regions from SNP 168107 to 168707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,311 DEBUG Processing 122/234 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:37,364 DEBUG Processing 693/881 atomic regions from SNP 207741 to 208341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,482 DEBUG Processing 433/642 atomic regions from SNP 129699 to 130299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,495 DEBUG Processing 586/1013 atomic regions from SNP 175544 to 176144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,527 DEBUG Processing 684/847 atomic regions from SNP 205096 to 205696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,572 DEBUG Processing 562/1129 atomic regions from SNP 168407 to 169007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,621 DEBUG Processing 123/234 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:37,666 DEBUG Processing 694/881 atomic regions from SNP 208041 to 208641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,797 DEBUG Processing 434/642 atomic regions from SNP 129999 to 130599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,844 DEBUG Processing 587/1013 atomic regions from SNP 175844 to 176444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,849 DEBUG Processing 685/847 atomic regions from SNP 205396 to 205996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,910 DEBUG Processing 563/1129 atomic regions from SNP 168707 to 169307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,961 DEBUG Processing 124/234 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:37,967 DEBUG Processing 695/881 atomic regions from SNP 208341 to 208941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,114 DEBUG Processing 435/642 atomic regions from SNP 130299 to 130899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,162 DEBUG Processing 686/847 atomic regions from SNP 205696 to 206296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,187 DEBUG Processing 588/1013 atomic regions from SNP 176144 to 176744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,254 DEBUG Processing 564/1129 atomic regions from SNP 169007 to 169607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,275 DEBUG Processing 696/881 atomic regions from SNP 208641 to 209241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,284 DEBUG Processing 125/234 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:38,442 DEBUG Processing 436/642 atomic regions from SNP 130599 to 131199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,480 DEBUG Processing 687/847 atomic regions from SNP 205996 to 206596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,519 DEBUG Processing 589/1013 atomic regions from SNP 176444 to 177044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,583 DEBUG Processing 697/881 atomic regions from SNP 208941 to 209541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,593 DEBUG Processing 126/234 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:38,595 DEBUG Processing 565/1129 atomic regions from SNP 169307 to 169907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,761 DEBUG Processing 437/642 atomic regions from SNP 130899 to 131499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,817 DEBUG Processing 688/847 atomic regions from SNP 206296 to 206896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,849 DEBUG Processing 590/1013 atomic regions from SNP 176744 to 177344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,894 DEBUG Processing 698/881 atomic regions from SNP 209241 to 209841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,904 DEBUG Processing 127/234 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:38,937 DEBUG Processing 566/1129 atomic regions from SNP 169607 to 170207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,105 DEBUG Processing 438/642 atomic regions from SNP 131199 to 131799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,155 DEBUG Processing 689/847 atomic regions from SNP 206596 to 207196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,180 DEBUG Processing 591/1013 atomic regions from SNP 177044 to 177644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,207 DEBUG Processing 699/881 atomic regions from SNP 209541 to 210141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,214 DEBUG Processing 128/234 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:39,279 DEBUG Processing 567/1129 atomic regions from SNP 169907 to 170507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,458 DEBUG Processing 439/642 atomic regions from SNP 131499 to 132099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,472 DEBUG Processing 690/847 atomic regions from SNP 206896 to 207496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,512 DEBUG Processing 592/1013 atomic regions from SNP 177344 to 177944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,524 DEBUG Processing 129/234 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:39,540 DEBUG Processing 700/881 atomic regions from SNP 209841 to 210441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,613 DEBUG Processing 568/1129 atomic regions from SNP 170207 to 170807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,779 DEBUG Processing 691/847 atomic regions from SNP 207196 to 207796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,802 DEBUG Processing 440/642 atomic regions from SNP 131799 to 132399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,835 DEBUG Processing 130/234 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:39,845 DEBUG Processing 593/1013 atomic regions from SNP 177644 to 178244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,883 DEBUG Processing 701/881 atomic regions from SNP 210141 to 210741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,946 DEBUG Processing 569/1129 atomic regions from SNP 170507 to 171107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,085 DEBUG Processing 692/847 atomic regions from SNP 207496 to 208096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,126 DEBUG Processing 441/642 atomic regions from SNP 132099 to 132699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,175 DEBUG Processing 594/1013 atomic regions from SNP 177944 to 178544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,191 DEBUG Processing 131/234 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:40,219 DEBUG Processing 702/881 atomic regions from SNP 210441 to 211041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,282 DEBUG Processing 570/1129 atomic regions from SNP 170807 to 171407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,383 DEBUG Processing 693/847 atomic regions from SNP 207796 to 208396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,440 DEBUG Processing 442/642 atomic regions from SNP 132399 to 132999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,504 DEBUG Processing 595/1013 atomic regions from SNP 178244 to 178844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,535 DEBUG Processing 132/234 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:40,548 DEBUG Processing 703/881 atomic regions from SNP 210741 to 211341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,618 DEBUG Processing 571/1129 atomic regions from SNP 171107 to 171707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,685 DEBUG Processing 694/847 atomic regions from SNP 208096 to 208696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,756 DEBUG Processing 443/642 atomic regions from SNP 132699 to 133299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,834 DEBUG Processing 596/1013 atomic regions from SNP 178544 to 179144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,860 DEBUG Processing 133/234 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:40,879 DEBUG Processing 704/881 atomic regions from SNP 211041 to 211641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,956 DEBUG Processing 572/1129 atomic regions from SNP 171407 to 172007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,986 DEBUG Processing 695/847 atomic regions from SNP 208396 to 208996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,069 DEBUG Processing 444/642 atomic regions from SNP 132999 to 133599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,161 DEBUG Processing 597/1013 atomic regions from SNP 178844 to 179444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,176 DEBUG Processing 134/234 atomic regions from SNP 40033 to 40634 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:41,186 DEBUG Processing 705/881 atomic regions from SNP 211341 to 211941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,286 DEBUG Processing 696/847 atomic regions from SNP 208696 to 209296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,294 DEBUG Processing 573/1129 atomic regions from SNP 171707 to 172307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,383 DEBUG Processing 445/642 atomic regions from SNP 133299 to 133899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,489 DEBUG Processing 598/1013 atomic regions from SNP 179144 to 179744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,494 DEBUG Processing 706/881 atomic regions from SNP 211641 to 212241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,503 DEBUG Processing 135/234 atomic regions from SNP 40334 to 40935 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:41,590 DEBUG Processing 697/847 atomic regions from SNP 208996 to 209596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,632 DEBUG Processing 574/1129 atomic regions from SNP 172007 to 172607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,693 DEBUG Processing 446/642 atomic regions from SNP 133599 to 134199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,803 DEBUG Processing 707/881 atomic regions from SNP 211941 to 212541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,814 DEBUG Processing 136/234 atomic regions from SNP 40635 to 41236 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:41,820 DEBUG Processing 599/1013 atomic regions from SNP 179444 to 180044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,897 DEBUG Processing 698/847 atomic regions from SNP 209296 to 209896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,971 DEBUG Processing 575/1129 atomic regions from SNP 172307 to 172907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,004 DEBUG Processing 447/642 atomic regions from SNP 133899 to 134499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,114 DEBUG Processing 708/881 atomic regions from SNP 212241 to 212841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,127 DEBUG Processing 137/234 atomic regions from SNP 40936 to 41537 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:42,154 DEBUG Processing 600/1013 atomic regions from SNP 179744 to 180344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,203 DEBUG Processing 699/847 atomic regions from SNP 209596 to 210196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,310 DEBUG Processing 576/1129 atomic regions from SNP 172607 to 173207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,331 DEBUG Processing 448/642 atomic regions from SNP 134199 to 134799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,424 DEBUG Processing 709/881 atomic regions from SNP 212541 to 213141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,437 DEBUG Processing 138/234 atomic regions from SNP 41237 to 41838 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:42,485 DEBUG Processing 601/1013 atomic regions from SNP 180044 to 180644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,508 DEBUG Processing 700/847 atomic regions from SNP 209896 to 210496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,645 DEBUG Processing 577/1129 atomic regions from SNP 172907 to 173507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,656 DEBUG Processing 449/642 atomic regions from SNP 134499 to 135099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,735 DEBUG Processing 710/881 atomic regions from SNP 212841 to 213441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,748 DEBUG Processing 139/234 atomic regions from SNP 41538 to 42139 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:42,811 DEBUG Processing 602/1013 atomic regions from SNP 180344 to 180944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,813 DEBUG Processing 701/847 atomic regions from SNP 210196 to 210796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,982 DEBUG Processing 578/1129 atomic regions from SNP 173207 to 173807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,992 DEBUG Processing 450/642 atomic regions from SNP 134799 to 135399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,046 DEBUG Processing 711/881 atomic regions from SNP 213141 to 213741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,058 DEBUG Processing 140/234 atomic regions from SNP 41839 to 42440 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:43,118 DEBUG Processing 702/847 atomic regions from SNP 210496 to 211096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,140 DEBUG Processing 603/1013 atomic regions from SNP 180644 to 181244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,308 DEBUG Processing 451/642 atomic regions from SNP 135099 to 135699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,321 DEBUG Processing 579/1129 atomic regions from SNP 173507 to 174107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,357 DEBUG Processing 712/881 atomic regions from SNP 213441 to 214041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,371 DEBUG Processing 141/234 atomic regions from SNP 42140 to 42741 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:43,425 DEBUG Processing 703/847 atomic regions from SNP 210796 to 211396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,465 DEBUG Processing 604/1013 atomic regions from SNP 180944 to 181544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,650 DEBUG Processing 452/642 atomic regions from SNP 135399 to 135999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,661 DEBUG Processing 580/1129 atomic regions from SNP 173807 to 174407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,677 DEBUG Processing 713/881 atomic regions from SNP 213741 to 214341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,682 DEBUG Processing 142/234 atomic regions from SNP 42441 to 43042 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:43,731 DEBUG Processing 704/847 atomic regions from SNP 211096 to 211696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,786 DEBUG Processing 605/1013 atomic regions from SNP 181244 to 181844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,997 DEBUG Processing 143/234 atomic regions from SNP 42742 to 43343 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:44,003 DEBUG Processing 581/1129 atomic regions from SNP 174107 to 174707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,005 DEBUG Processing 453/642 atomic regions from SNP 135699 to 136299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,014 DEBUG Processing 714/881 atomic regions from SNP 214041 to 214641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,038 DEBUG Processing 705/847 atomic regions from SNP 211396 to 211996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,106 DEBUG Processing 606/1013 atomic regions from SNP 181544 to 182144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,314 DEBUG Processing 144/234 atomic regions from SNP 43043 to 43644 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:44,351 DEBUG Processing 706/847 atomic regions from SNP 211696 to 212296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,351 DEBUG Processing 715/881 atomic regions from SNP 214341 to 214941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,352 DEBUG Processing 582/1129 atomic regions from SNP 174407 to 175007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,361 DEBUG Processing 454/642 atomic regions from SNP 135999 to 136599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,431 DEBUG Processing 607/1013 atomic regions from SNP 181844 to 182444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,625 DEBUG Processing 145/234 atomic regions from SNP 43344 to 43945 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:44,668 DEBUG Processing 707/847 atomic regions from SNP 211996 to 212596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,680 DEBUG Processing 455/642 atomic regions from SNP 136299 to 136899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,689 DEBUG Processing 716/881 atomic regions from SNP 214641 to 215241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,702 DEBUG Processing 583/1129 atomic regions from SNP 174707 to 175307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,756 DEBUG Processing 608/1013 atomic regions from SNP 182144 to 182744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,933 DEBUG Processing 146/234 atomic regions from SNP 43645 to 44246 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:44,980 DEBUG Processing 708/847 atomic regions from SNP 212296 to 212896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,003 DEBUG Processing 456/642 atomic regions from SNP 136599 to 137199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,006 DEBUG Processing 717/881 atomic regions from SNP 214941 to 215541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,046 DEBUG Processing 584/1129 atomic regions from SNP 175007 to 175607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,082 DEBUG Processing 609/1013 atomic regions from SNP 182444 to 183044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,240 DEBUG Processing 147/234 atomic regions from SNP 43946 to 44547 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:45,288 DEBUG Processing 709/847 atomic regions from SNP 212596 to 213196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,319 DEBUG Processing 718/881 atomic regions from SNP 215241 to 215841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,322 DEBUG Processing 457/642 atomic regions from SNP 136899 to 137499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,389 DEBUG Processing 585/1129 atomic regions from SNP 175307 to 175907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,408 DEBUG Processing 610/1013 atomic regions from SNP 182744 to 183344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,546 DEBUG Processing 148/234 atomic regions from SNP 44247 to 44848 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:45,605 DEBUG Processing 710/847 atomic regions from SNP 212896 to 213496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,630 DEBUG Processing 719/881 atomic regions from SNP 215541 to 216141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,661 DEBUG Processing 458/642 atomic regions from SNP 137199 to 137799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,729 DEBUG Processing 586/1129 atomic regions from SNP 175607 to 176207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,736 DEBUG Processing 611/1013 atomic regions from SNP 183044 to 183644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,853 DEBUG Processing 149/234 atomic regions from SNP 44548 to 45149 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:45,935 DEBUG Processing 711/847 atomic regions from SNP 213196 to 213796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,939 DEBUG Processing 720/881 atomic regions from SNP 215841 to 216441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,014 DEBUG Processing 459/642 atomic regions from SNP 137499 to 138099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,065 DEBUG Processing 612/1013 atomic regions from SNP 183344 to 183944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,068 DEBUG Processing 587/1129 atomic regions from SNP 175907 to 176507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,159 DEBUG Processing 150/234 atomic regions from SNP 44849 to 45450 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:46,240 DEBUG Processing 712/847 atomic regions from SNP 213496 to 214096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,277 DEBUG Processing 721/881 atomic regions from SNP 216141 to 216741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,350 DEBUG Processing 460/642 atomic regions from SNP 137799 to 138399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,393 DEBUG Processing 613/1013 atomic regions from SNP 183644 to 184244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,408 DEBUG Processing 588/1129 atomic regions from SNP 176207 to 176807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,468 DEBUG Processing 151/234 atomic regions from SNP 45150 to 45751 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:46,544 DEBUG Processing 713/847 atomic regions from SNP 213796 to 214396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,594 DEBUG Processing 722/881 atomic regions from SNP 216441 to 217041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,697 DEBUG Processing 461/642 atomic regions from SNP 138099 to 138699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,721 DEBUG Processing 614/1013 atomic regions from SNP 183944 to 184544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,750 DEBUG Processing 589/1129 atomic regions from SNP 176507 to 177107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,776 DEBUG Processing 152/234 atomic regions from SNP 45451 to 46052 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:46,850 DEBUG Processing 714/847 atomic regions from SNP 214096 to 214696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,898 DEBUG Processing 723/881 atomic regions from SNP 216741 to 217341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,028 DEBUG Processing 462/642 atomic regions from SNP 138399 to 138999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,050 DEBUG Processing 615/1013 atomic regions from SNP 184244 to 184844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,087 DEBUG Processing 153/234 atomic regions from SNP 45752 to 46353 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:47,090 DEBUG Processing 590/1129 atomic regions from SNP 176807 to 177407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,184 DEBUG Processing 715/847 atomic regions from SNP 214396 to 214996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,201 DEBUG Processing 724/881 atomic regions from SNP 217041 to 217641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,365 DEBUG Processing 463/642 atomic regions from SNP 138699 to 139299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,380 DEBUG Processing 616/1013 atomic regions from SNP 184544 to 185144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,396 DEBUG Processing 154/234 atomic regions from SNP 46053 to 46654 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:47,435 DEBUG Processing 591/1129 atomic regions from SNP 177107 to 177707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,509 DEBUG Processing 725/881 atomic regions from SNP 217341 to 217941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,526 DEBUG Processing 716/847 atomic regions from SNP 214696 to 215296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,691 DEBUG Processing 464/642 atomic regions from SNP 138999 to 139599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,708 DEBUG Processing 155/234 atomic regions from SNP 46354 to 46955 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:47,713 DEBUG Processing 617/1013 atomic regions from SNP 184844 to 185444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,777 DEBUG Processing 592/1129 atomic regions from SNP 177407 to 178007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,812 DEBUG Processing 726/881 atomic regions from SNP 217641 to 218241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,863 DEBUG Processing 717/847 atomic regions from SNP 214996 to 215596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,009 DEBUG Processing 465/642 atomic regions from SNP 139299 to 139899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,020 DEBUG Processing 156/234 atomic regions from SNP 46655 to 47256 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:48,044 DEBUG Processing 618/1013 atomic regions from SNP 185144 to 185744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,118 DEBUG Processing 727/881 atomic regions from SNP 217941 to 218541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,123 DEBUG Processing 593/1129 atomic regions from SNP 177707 to 178307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,197 DEBUG Processing 718/847 atomic regions from SNP 215296 to 215896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,326 DEBUG Processing 466/642 atomic regions from SNP 139599 to 140199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,331 DEBUG Processing 157/234 atomic regions from SNP 46956 to 47557 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:48,373 DEBUG Processing 619/1013 atomic regions from SNP 185444 to 186044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,430 DEBUG Processing 728/881 atomic regions from SNP 218241 to 218841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,467 DEBUG Processing 594/1129 atomic regions from SNP 178007 to 178607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,502 DEBUG Processing 719/847 atomic regions from SNP 215596 to 216196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,643 DEBUG Processing 158/234 atomic regions from SNP 47257 to 47858 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:48,662 DEBUG Processing 467/642 atomic regions from SNP 139899 to 140499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,700 DEBUG Processing 620/1013 atomic regions from SNP 185744 to 186344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,738 DEBUG Processing 729/881 atomic regions from SNP 218541 to 219141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,805 DEBUG Processing 595/1129 atomic regions from SNP 178307 to 178907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,808 DEBUG Processing 720/847 atomic regions from SNP 215896 to 216496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,955 DEBUG Processing 159/234 atomic regions from SNP 47558 to 48159 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:49,012 DEBUG Processing 468/642 atomic regions from SNP 140199 to 140799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,032 DEBUG Processing 621/1013 atomic regions from SNP 186044 to 186644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,049 DEBUG Processing 730/881 atomic regions from SNP 218841 to 219441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,114 DEBUG Processing 721/847 atomic regions from SNP 216196 to 216796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,147 DEBUG Processing 596/1129 atomic regions from SNP 178607 to 179207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,265 DEBUG Processing 160/234 atomic regions from SNP 47859 to 48460 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:49,360 DEBUG Processing 469/642 atomic regions from SNP 140499 to 141099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,362 DEBUG Processing 731/881 atomic regions from SNP 219141 to 219741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,363 DEBUG Processing 622/1013 atomic regions from SNP 186344 to 186944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,421 DEBUG Processing 722/847 atomic regions from SNP 216496 to 217096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,485 DEBUG Processing 597/1129 atomic regions from SNP 178907 to 179507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,570 DEBUG Processing 161/234 atomic regions from SNP 48160 to 48761 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:49,676 DEBUG Processing 732/881 atomic regions from SNP 219441 to 220041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,693 DEBUG Processing 470/642 atomic regions from SNP 140799 to 141399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,697 DEBUG Processing 623/1013 atomic regions from SNP 186644 to 187244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,731 DEBUG Processing 723/847 atomic regions from SNP 216796 to 217396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,820 DEBUG Processing 598/1129 atomic regions from SNP 179207 to 179807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,876 DEBUG Processing 162/234 atomic regions from SNP 48461 to 49062 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:49,986 DEBUG Processing 733/881 atomic regions from SNP 219741 to 220341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,020 DEBUG Processing 471/642 atomic regions from SNP 141099 to 141699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,031 DEBUG Processing 624/1013 atomic regions from SNP 186944 to 187544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,040 DEBUG Processing 724/847 atomic regions from SNP 217096 to 217696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,178 DEBUG Processing 599/1129 atomic regions from SNP 179507 to 180107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,186 DEBUG Processing 163/234 atomic regions from SNP 48762 to 49363 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:50,298 DEBUG Processing 734/881 atomic regions from SNP 220041 to 220641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,342 DEBUG Processing 472/642 atomic regions from SNP 141399 to 141999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,351 DEBUG Processing 725/847 atomic regions from SNP 217396 to 217996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,366 DEBUG Processing 625/1013 atomic regions from SNP 187244 to 187844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,495 DEBUG Processing 164/234 atomic regions from SNP 49063 to 49664 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:50,541 DEBUG Processing 600/1129 atomic regions from SNP 179807 to 180407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,606 DEBUG Processing 735/881 atomic regions from SNP 220341 to 220941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,660 DEBUG Processing 726/847 atomic regions from SNP 217696 to 218296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,661 DEBUG Processing 473/642 atomic regions from SNP 141699 to 142299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,696 DEBUG Processing 626/1013 atomic regions from SNP 187544 to 188144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,803 DEBUG Processing 165/234 atomic regions from SNP 49364 to 49964 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:50,887 DEBUG Processing 601/1129 atomic regions from SNP 180107 to 180707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,913 DEBUG Processing 736/881 atomic regions from SNP 220641 to 221241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,968 DEBUG Processing 727/847 atomic regions from SNP 217996 to 218596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,977 DEBUG Processing 474/642 atomic regions from SNP 141999 to 142599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,020 DEBUG Processing 627/1013 atomic regions from SNP 187844 to 188444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,108 DEBUG Processing 166/234 atomic regions from SNP 49664 to 50264 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:51,220 DEBUG Processing 737/881 atomic regions from SNP 220941 to 221541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,225 DEBUG Processing 602/1129 atomic regions from SNP 180407 to 181007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,278 DEBUG Processing 728/847 atomic regions from SNP 218296 to 218896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,291 DEBUG Processing 475/642 atomic regions from SNP 142299 to 142899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,346 DEBUG Processing 628/1013 atomic regions from SNP 188144 to 188744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,412 DEBUG Processing 167/234 atomic regions from SNP 49964 to 50564 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:51,527 DEBUG Processing 738/881 atomic regions from SNP 221241 to 221841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,565 DEBUG Processing 603/1129 atomic regions from SNP 180707 to 181307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,586 DEBUG Processing 729/847 atomic regions from SNP 218596 to 219196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,606 DEBUG Processing 476/642 atomic regions from SNP 142599 to 143199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,671 DEBUG Processing 629/1013 atomic regions from SNP 188444 to 189044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,713 DEBUG Processing 168/234 atomic regions from SNP 50264 to 50864 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:51,833 DEBUG Processing 739/881 atomic regions from SNP 221541 to 222141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,894 DEBUG Processing 730/847 atomic regions from SNP 218896 to 219496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,908 DEBUG Processing 604/1129 atomic regions from SNP 181007 to 181607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,920 DEBUG Processing 477/642 atomic regions from SNP 142899 to 143499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,997 DEBUG Processing 630/1013 atomic regions from SNP 188744 to 189344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,016 DEBUG Processing 169/234 atomic regions from SNP 50564 to 51164 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:52,137 DEBUG Processing 740/881 atomic regions from SNP 221841 to 222441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,204 DEBUG Processing 731/847 atomic regions from SNP 219196 to 219796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,236 DEBUG Processing 478/642 atomic regions from SNP 143199 to 143799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,251 DEBUG Processing 605/1129 atomic regions from SNP 181307 to 181907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,322 DEBUG Processing 170/234 atomic regions from SNP 50864 to 51464 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:52,324 DEBUG Processing 631/1013 atomic regions from SNP 189044 to 189644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,438 DEBUG Processing 741/881 atomic regions from SNP 222141 to 222741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,512 DEBUG Processing 732/847 atomic regions from SNP 219496 to 220096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,551 DEBUG Processing 479/642 atomic regions from SNP 143499 to 144099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,593 DEBUG Processing 606/1129 atomic regions from SNP 181607 to 182207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,631 DEBUG Processing 171/234 atomic regions from SNP 51164 to 51764 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:52,656 DEBUG Processing 632/1013 atomic regions from SNP 189344 to 189944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,743 DEBUG Processing 742/881 atomic regions from SNP 222441 to 223041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,818 DEBUG Processing 733/847 atomic regions from SNP 219796 to 220396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,866 DEBUG Processing 480/642 atomic regions from SNP 143799 to 144399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,932 DEBUG Processing 607/1129 atomic regions from SNP 181907 to 182507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,938 DEBUG Processing 172/234 atomic regions from SNP 51464 to 52064 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:52,984 DEBUG Processing 633/1013 atomic regions from SNP 189644 to 190244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,045 DEBUG Processing 743/881 atomic regions from SNP 222741 to 223341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,119 DEBUG Processing 734/847 atomic regions from SNP 220096 to 220696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,182 DEBUG Processing 481/642 atomic regions from SNP 144099 to 144699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,270 DEBUG Processing 173/234 atomic regions from SNP 51764 to 52364 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:53,274 DEBUG Processing 608/1129 atomic regions from SNP 182207 to 182807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,339 DEBUG Processing 634/1013 atomic regions from SNP 189944 to 190544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,351 DEBUG Processing 744/881 atomic regions from SNP 223041 to 223641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,420 DEBUG Processing 735/847 atomic regions from SNP 220396 to 220996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,496 DEBUG Processing 482/642 atomic regions from SNP 144399 to 144999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,605 DEBUG Processing 174/234 atomic regions from SNP 52064 to 52664 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:53,612 DEBUG Processing 609/1129 atomic regions from SNP 182507 to 183107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,662 DEBUG Processing 745/881 atomic regions from SNP 223341 to 223941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,690 DEBUG Processing 635/1013 atomic regions from SNP 190244 to 190844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,725 DEBUG Processing 736/847 atomic regions from SNP 220696 to 221296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,805 DEBUG Processing 483/642 atomic regions from SNP 144699 to 145299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,919 DEBUG Processing 175/234 atomic regions from SNP 52364 to 52964 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:53,956 DEBUG Processing 610/1129 atomic regions from SNP 182807 to 183407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,972 DEBUG Processing 746/881 atomic regions from SNP 223641 to 224241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,027 DEBUG Processing 636/1013 atomic regions from SNP 190544 to 191144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,033 DEBUG Processing 737/847 atomic regions from SNP 220996 to 221596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,126 DEBUG Processing 484/642 atomic regions from SNP 144999 to 145599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,221 DEBUG Processing 176/234 atomic regions from SNP 52664 to 53264 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:54,297 DEBUG Processing 611/1129 atomic regions from SNP 183107 to 183707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,298 DEBUG Processing 747/881 atomic regions from SNP 223941 to 224541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,342 DEBUG Processing 738/847 atomic regions from SNP 221296 to 221896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,355 DEBUG Processing 637/1013 atomic regions from SNP 190844 to 191444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,463 DEBUG Processing 485/642 atomic regions from SNP 145299 to 145899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,522 DEBUG Processing 177/234 atomic regions from SNP 52964 to 53564 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:54,641 DEBUG Processing 612/1129 atomic regions from SNP 183407 to 184007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,646 DEBUG Processing 748/881 atomic regions from SNP 224241 to 224841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,654 DEBUG Processing 739/847 atomic regions from SNP 221596 to 222196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,683 DEBUG Processing 638/1013 atomic regions from SNP 191144 to 191744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,811 DEBUG Processing 486/642 atomic regions from SNP 145599 to 146199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,827 DEBUG Processing 178/234 atomic regions from SNP 53264 to 53864 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:54,971 DEBUG Processing 740/847 atomic regions from SNP 221896 to 222496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,984 DEBUG Processing 613/1129 atomic regions from SNP 183707 to 184307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,989 DEBUG Processing 749/881 atomic regions from SNP 224541 to 225141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,013 DEBUG Processing 639/1013 atomic regions from SNP 191444 to 192044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,135 DEBUG Processing 179/234 atomic regions from SNP 53564 to 54164 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:55,158 DEBUG Processing 487/642 atomic regions from SNP 145899 to 146499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,288 DEBUG Processing 741/847 atomic regions from SNP 222196 to 222796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,303 DEBUG Processing 750/881 atomic regions from SNP 224841 to 225441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,329 DEBUG Processing 614/1129 atomic regions from SNP 184007 to 184607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,345 DEBUG Processing 640/1013 atomic regions from SNP 191744 to 192344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,441 DEBUG Processing 180/234 atomic regions from SNP 53864 to 54464 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:55,501 DEBUG Processing 488/642 atomic regions from SNP 146199 to 146799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,623 DEBUG Processing 742/847 atomic regions from SNP 222496 to 223096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,643 DEBUG Processing 751/881 atomic regions from SNP 225141 to 225741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,673 DEBUG Processing 615/1129 atomic regions from SNP 184307 to 184907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,676 DEBUG Processing 641/1013 atomic regions from SNP 192044 to 192644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,746 DEBUG Processing 181/234 atomic regions from SNP 54164 to 54764 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:55,849 DEBUG Processing 489/642 atomic regions from SNP 146499 to 147099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,953 DEBUG Processing 752/881 atomic regions from SNP 225441 to 226041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,961 DEBUG Processing 743/847 atomic regions from SNP 222796 to 223396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,006 DEBUG Processing 642/1013 atomic regions from SNP 192344 to 192944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,015 DEBUG Processing 616/1129 atomic regions from SNP 184607 to 185207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,051 DEBUG Processing 182/234 atomic regions from SNP 54464 to 55064 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:56,183 DEBUG Processing 490/642 atomic regions from SNP 146799 to 147399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,263 DEBUG Processing 753/881 atomic regions from SNP 225741 to 226341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,289 DEBUG Processing 744/847 atomic regions from SNP 223096 to 223696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,336 DEBUG Processing 643/1013 atomic regions from SNP 192644 to 193244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,357 DEBUG Processing 617/1129 atomic regions from SNP 184907 to 185507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,371 DEBUG Processing 183/234 atomic regions from SNP 54764 to 55364 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:56,508 DEBUG Processing 491/642 atomic regions from SNP 147099 to 147699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,568 DEBUG Processing 754/881 atomic regions from SNP 226041 to 226641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,630 DEBUG Processing 745/847 atomic regions from SNP 223396 to 223996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,665 DEBUG Processing 644/1013 atomic regions from SNP 192944 to 193544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,678 DEBUG Processing 184/234 atomic regions from SNP 55064 to 55664 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:56,698 DEBUG Processing 618/1129 atomic regions from SNP 185207 to 185807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,832 DEBUG Processing 492/642 atomic regions from SNP 147399 to 147999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,870 DEBUG Processing 755/881 atomic regions from SNP 226341 to 226941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,959 DEBUG Processing 746/847 atomic regions from SNP 223696 to 224296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,989 DEBUG Processing 185/234 atomic regions from SNP 55364 to 55964 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:56,997 DEBUG Processing 645/1013 atomic regions from SNP 193244 to 193844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,039 DEBUG Processing 619/1129 atomic regions from SNP 185507 to 186107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,166 DEBUG Processing 493/642 atomic regions from SNP 147699 to 148299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,172 DEBUG Processing 756/881 atomic regions from SNP 226641 to 227241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,302 DEBUG Processing 186/234 atomic regions from SNP 55664 to 56264 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:57,303 DEBUG Processing 747/847 atomic regions from SNP 223996 to 224596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,332 DEBUG Processing 646/1013 atomic regions from SNP 193544 to 194144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,380 DEBUG Processing 620/1129 atomic regions from SNP 185807 to 186407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,477 DEBUG Processing 757/881 atomic regions from SNP 226941 to 227541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,496 DEBUG Processing 494/642 atomic regions from SNP 147999 to 148599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,613 DEBUG Processing 187/234 atomic regions from SNP 55964 to 56564 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:57,653 DEBUG Processing 748/847 atomic regions from SNP 224296 to 224896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,664 DEBUG Processing 647/1013 atomic regions from SNP 193844 to 194444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,720 DEBUG Processing 621/1129 atomic regions from SNP 186107 to 186707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,780 DEBUG Processing 758/881 atomic regions from SNP 227241 to 227841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,830 DEBUG Processing 495/642 atomic regions from SNP 148299 to 148899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,917 DEBUG Processing 188/234 atomic regions from SNP 56264 to 56864 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:57,993 DEBUG Processing 749/847 atomic regions from SNP 224596 to 225196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,994 DEBUG Processing 648/1013 atomic regions from SNP 194144 to 194744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,061 DEBUG Processing 622/1129 atomic regions from SNP 186407 to 187007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,084 DEBUG Processing 759/881 atomic regions from SNP 227541 to 228141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,143 DEBUG Processing 496/642 atomic regions from SNP 148599 to 149199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,220 DEBUG Processing 189/234 atomic regions from SNP 56564 to 57164 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:58,318 DEBUG Processing 750/847 atomic regions from SNP 224896 to 225496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,324 DEBUG Processing 649/1013 atomic regions from SNP 194444 to 195044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,389 DEBUG Processing 760/881 atomic regions from SNP 227841 to 228441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,404 DEBUG Processing 623/1129 atomic regions from SNP 186707 to 187307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,452 DEBUG Processing 497/642 atomic regions from SNP 148899 to 149499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,531 DEBUG Processing 190/234 atomic regions from SNP 56864 to 57464 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:58,632 DEBUG Processing 751/847 atomic regions from SNP 225196 to 225796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,653 DEBUG Processing 650/1013 atomic regions from SNP 194744 to 195344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,698 DEBUG Processing 761/881 atomic regions from SNP 228141 to 228741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,743 DEBUG Processing 624/1129 atomic regions from SNP 187007 to 187607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,763 DEBUG Processing 498/642 atomic regions from SNP 149199 to 149799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,846 DEBUG Processing 191/234 atomic regions from SNP 57164 to 57764 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:58,964 DEBUG Processing 752/847 atomic regions from SNP 225496 to 226096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,983 DEBUG Processing 651/1013 atomic regions from SNP 195044 to 195644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,007 DEBUG Processing 762/881 atomic regions from SNP 228441 to 229041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,081 DEBUG Processing 499/642 atomic regions from SNP 149499 to 150099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,081 DEBUG Processing 625/1129 atomic regions from SNP 187307 to 187907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,155 DEBUG Processing 192/234 atomic regions from SNP 57464 to 58064 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:59,306 DEBUG Processing 753/847 atomic regions from SNP 225796 to 226396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,312 DEBUG Processing 652/1013 atomic regions from SNP 195344 to 195944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,317 DEBUG Processing 763/881 atomic regions from SNP 228741 to 229341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,397 DEBUG Processing 500/642 atomic regions from SNP 149799 to 150399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,424 DEBUG Processing 626/1129 atomic regions from SNP 187607 to 188207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,484 DEBUG Processing 193/234 atomic regions from SNP 57764 to 58364 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:59,627 DEBUG Processing 764/881 atomic regions from SNP 229041 to 229641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,642 DEBUG Processing 653/1013 atomic regions from SNP 195644 to 196244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,650 DEBUG Processing 754/847 atomic regions from SNP 226096 to 226696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,712 DEBUG Processing 501/642 atomic regions from SNP 150099 to 150699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,763 DEBUG Processing 627/1129 atomic regions from SNP 187907 to 188507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,814 DEBUG Processing 194/234 atomic regions from SNP 58064 to 58664 for chrX (subchromosome 4 of 4). 2025-01-31 09:46:59,933 DEBUG Processing 765/881 atomic regions from SNP 229341 to 229941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,970 DEBUG Processing 654/1013 atomic regions from SNP 195944 to 196544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,985 DEBUG Processing 755/847 atomic regions from SNP 226396 to 226996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,053 DEBUG Processing 502/642 atomic regions from SNP 150399 to 150999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,101 DEBUG Processing 628/1129 atomic regions from SNP 188207 to 188807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,127 DEBUG Processing 195/234 atomic regions from SNP 58364 to 58964 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:00,239 DEBUG Processing 766/881 atomic regions from SNP 229641 to 230241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,292 DEBUG Processing 756/847 atomic regions from SNP 226696 to 227296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,300 DEBUG Processing 655/1013 atomic regions from SNP 196244 to 196844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,395 DEBUG Processing 503/642 atomic regions from SNP 150699 to 151299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,432 DEBUG Processing 196/234 atomic regions from SNP 58664 to 59264 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:00,439 DEBUG Processing 629/1129 atomic regions from SNP 188507 to 189107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,548 DEBUG Processing 767/881 atomic regions from SNP 229941 to 230541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,598 DEBUG Processing 757/847 atomic regions from SNP 226996 to 227596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,628 DEBUG Processing 656/1013 atomic regions from SNP 196544 to 197144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,737 DEBUG Processing 504/642 atomic regions from SNP 150999 to 151599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,742 DEBUG Processing 197/234 atomic regions from SNP 58964 to 59564 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:00,781 DEBUG Processing 630/1129 atomic regions from SNP 188807 to 189407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,856 DEBUG Processing 768/881 atomic regions from SNP 230241 to 230841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,904 DEBUG Processing 758/847 atomic regions from SNP 227296 to 227896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,954 DEBUG Processing 657/1013 atomic regions from SNP 196844 to 197444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,050 DEBUG Processing 198/234 atomic regions from SNP 59264 to 59864 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:01,085 DEBUG Processing 505/642 atomic regions from SNP 151299 to 151899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,119 DEBUG Processing 631/1129 atomic regions from SNP 189107 to 189707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,162 DEBUG Processing 769/881 atomic regions from SNP 230541 to 231141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,220 DEBUG Processing 759/847 atomic regions from SNP 227596 to 228196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,278 DEBUG Processing 658/1013 atomic regions from SNP 197144 to 197744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,358 DEBUG Processing 199/234 atomic regions from SNP 59564 to 60164 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:01,437 DEBUG Processing 506/642 atomic regions from SNP 151599 to 152199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,457 DEBUG Processing 632/1129 atomic regions from SNP 189407 to 190007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,469 DEBUG Processing 770/881 atomic regions from SNP 230841 to 231441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,560 DEBUG Processing 760/847 atomic regions from SNP 227896 to 228496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,603 DEBUG Processing 659/1013 atomic regions from SNP 197444 to 198044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,663 DEBUG Processing 200/234 atomic regions from SNP 59864 to 60464 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:01,775 DEBUG Processing 771/881 atomic regions from SNP 231141 to 231741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,786 DEBUG Processing 507/642 atomic regions from SNP 151899 to 152499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,798 DEBUG Processing 633/1129 atomic regions from SNP 189707 to 190307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,891 DEBUG Processing 761/847 atomic regions from SNP 228196 to 228796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,930 DEBUG Processing 660/1013 atomic regions from SNP 197744 to 198344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,996 DEBUG Processing 201/234 atomic regions from SNP 60164 to 60764 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:02,082 DEBUG Processing 772/881 atomic regions from SNP 231441 to 232041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,114 DEBUG Processing 508/642 atomic regions from SNP 152199 to 152799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,140 DEBUG Processing 634/1129 atomic regions from SNP 190007 to 190607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,224 DEBUG Processing 762/847 atomic regions from SNP 228496 to 229096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,259 DEBUG Processing 661/1013 atomic regions from SNP 198044 to 198644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,308 DEBUG Processing 202/234 atomic regions from SNP 60464 to 61064 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:02,388 DEBUG Processing 773/881 atomic regions from SNP 231741 to 232341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,451 DEBUG Processing 509/642 atomic regions from SNP 152499 to 153099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,482 DEBUG Processing 635/1129 atomic regions from SNP 190307 to 190907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,566 DEBUG Processing 763/847 atomic regions from SNP 228796 to 229396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,587 DEBUG Processing 662/1013 atomic regions from SNP 198344 to 198944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,631 DEBUG Processing 203/234 atomic regions from SNP 60764 to 61364 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:02,693 DEBUG Processing 774/881 atomic regions from SNP 232041 to 232641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,795 DEBUG Processing 510/642 atomic regions from SNP 152799 to 153399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,822 DEBUG Processing 636/1129 atomic regions from SNP 190607 to 191207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,909 DEBUG Processing 764/847 atomic regions from SNP 229096 to 229696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,916 DEBUG Processing 663/1013 atomic regions from SNP 198644 to 199244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,939 DEBUG Processing 204/234 atomic regions from SNP 61064 to 61664 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:02,996 DEBUG Processing 775/881 atomic regions from SNP 232341 to 232941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,141 DEBUG Processing 511/642 atomic regions from SNP 153099 to 153699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,160 DEBUG Processing 637/1129 atomic regions from SNP 190907 to 191507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,240 DEBUG Processing 765/847 atomic regions from SNP 229396 to 229996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,247 DEBUG Processing 664/1013 atomic regions from SNP 198944 to 199544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,249 DEBUG Processing 205/234 atomic regions from SNP 61364 to 61964 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:03,303 DEBUG Processing 776/881 atomic regions from SNP 232641 to 233241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,495 DEBUG Processing 512/642 atomic regions from SNP 153399 to 153999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,496 DEBUG Processing 638/1129 atomic regions from SNP 191207 to 191807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,558 DEBUG Processing 206/234 atomic regions from SNP 61664 to 62264 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:03,566 DEBUG Processing 766/847 atomic regions from SNP 229696 to 230296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,582 DEBUG Processing 665/1013 atomic regions from SNP 199244 to 199844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,606 DEBUG Processing 777/881 atomic regions from SNP 232941 to 233541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,837 DEBUG Processing 639/1129 atomic regions from SNP 191507 to 192107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,846 DEBUG Processing 513/642 atomic regions from SNP 153699 to 154299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,869 DEBUG Processing 207/234 atomic regions from SNP 61964 to 62564 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:03,902 DEBUG Processing 767/847 atomic regions from SNP 229996 to 230596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,916 DEBUG Processing 666/1013 atomic regions from SNP 199544 to 200144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,916 DEBUG Processing 778/881 atomic regions from SNP 233241 to 233841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,181 DEBUG Processing 208/234 atomic regions from SNP 62264 to 62864 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:04,184 DEBUG Processing 640/1129 atomic regions from SNP 191807 to 192407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,200 DEBUG Processing 514/642 atomic regions from SNP 153999 to 154599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,213 DEBUG Processing 768/847 atomic regions from SNP 230296 to 230896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,228 DEBUG Processing 779/881 atomic regions from SNP 233541 to 234141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,248 DEBUG Processing 667/1013 atomic regions from SNP 199844 to 200444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,496 DEBUG Processing 209/234 atomic regions from SNP 62564 to 63164 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:04,524 DEBUG Processing 769/847 atomic regions from SNP 230596 to 231196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,534 DEBUG Processing 641/1129 atomic regions from SNP 192107 to 192707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,541 DEBUG Processing 780/881 atomic regions from SNP 233841 to 234441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,552 DEBUG Processing 515/642 atomic regions from SNP 154299 to 154899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,579 DEBUG Processing 668/1013 atomic regions from SNP 200144 to 200744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,806 DEBUG Processing 210/234 atomic regions from SNP 62864 to 63464 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:04,836 DEBUG Processing 770/847 atomic regions from SNP 230896 to 231496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,854 DEBUG Processing 781/881 atomic regions from SNP 234141 to 234741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,879 DEBUG Processing 642/1129 atomic regions from SNP 192407 to 193007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,890 DEBUG Processing 516/642 atomic regions from SNP 154599 to 155199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,911 DEBUG Processing 669/1013 atomic regions from SNP 200444 to 201044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,112 DEBUG Processing 211/234 atomic regions from SNP 63164 to 63764 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:05,144 DEBUG Processing 771/847 atomic regions from SNP 231196 to 231796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,165 DEBUG Processing 782/881 atomic regions from SNP 234441 to 235041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,222 DEBUG Processing 643/1129 atomic regions from SNP 192707 to 193307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,239 DEBUG Processing 670/1013 atomic regions from SNP 200744 to 201344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,239 DEBUG Processing 517/642 atomic regions from SNP 154899 to 155499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,414 DEBUG Processing 212/234 atomic regions from SNP 63464 to 64064 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:05,469 DEBUG Processing 772/847 atomic regions from SNP 231496 to 232096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,476 DEBUG Processing 783/881 atomic regions from SNP 234741 to 235341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,565 DEBUG Processing 644/1129 atomic regions from SNP 193007 to 193607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,572 DEBUG Processing 671/1013 atomic regions from SNP 201044 to 201644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,590 DEBUG Processing 518/642 atomic regions from SNP 155199 to 155799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,743 DEBUG Processing 213/234 atomic regions from SNP 63764 to 64364 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:05,784 DEBUG Processing 784/881 atomic regions from SNP 235041 to 235641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,810 DEBUG Processing 773/847 atomic regions from SNP 231796 to 232396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,903 DEBUG Processing 645/1129 atomic regions from SNP 193307 to 193907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,922 DEBUG Processing 672/1013 atomic regions from SNP 201344 to 201944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,937 DEBUG Processing 519/642 atomic regions from SNP 155499 to 156099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,074 DEBUG Processing 214/234 atomic regions from SNP 64064 to 64664 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:06,091 DEBUG Processing 785/881 atomic regions from SNP 235341 to 235941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,143 DEBUG Processing 774/847 atomic regions from SNP 232096 to 232696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,243 DEBUG Processing 646/1129 atomic regions from SNP 193607 to 194207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,289 DEBUG Processing 520/642 atomic regions from SNP 155799 to 156399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,292 DEBUG Processing 673/1013 atomic regions from SNP 201644 to 202244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,393 DEBUG Processing 215/234 atomic regions from SNP 64364 to 64964 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:06,398 DEBUG Processing 786/881 atomic regions from SNP 235641 to 236241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,462 DEBUG Processing 775/847 atomic regions from SNP 232396 to 232996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,583 DEBUG Processing 647/1129 atomic regions from SNP 193907 to 194507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,642 DEBUG Processing 521/642 atomic regions from SNP 156099 to 156699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,648 DEBUG Processing 674/1013 atomic regions from SNP 201944 to 202544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,701 DEBUG Processing 216/234 atomic regions from SNP 64664 to 65264 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:06,705 DEBUG Processing 787/881 atomic regions from SNP 235941 to 236541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,800 DEBUG Processing 776/847 atomic regions from SNP 232696 to 233296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,919 DEBUG Processing 648/1129 atomic regions from SNP 194207 to 194807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,995 DEBUG Processing 522/642 atomic regions from SNP 156399 to 156999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,003 DEBUG Processing 675/1013 atomic regions from SNP 202244 to 202844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,011 DEBUG Processing 217/234 atomic regions from SNP 64964 to 65564 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:07,015 DEBUG Processing 788/881 atomic regions from SNP 236241 to 236841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,138 DEBUG Processing 777/847 atomic regions from SNP 232996 to 233596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,256 DEBUG Processing 649/1129 atomic regions from SNP 194507 to 195107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,326 DEBUG Processing 218/234 atomic regions from SNP 65264 to 65864 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:07,330 DEBUG Processing 789/881 atomic regions from SNP 236541 to 237141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,344 DEBUG Processing 523/642 atomic regions from SNP 156699 to 157299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,370 DEBUG Processing 676/1013 atomic regions from SNP 202544 to 203144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,467 DEBUG Processing 778/847 atomic regions from SNP 233296 to 233896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,593 DEBUG Processing 650/1129 atomic regions from SNP 194807 to 195407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,638 DEBUG Processing 219/234 atomic regions from SNP 65564 to 66164 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:07,641 DEBUG Processing 790/881 atomic regions from SNP 236841 to 237441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,686 DEBUG Processing 524/642 atomic regions from SNP 156999 to 157599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,728 DEBUG Processing 677/1013 atomic regions from SNP 202844 to 203444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,787 DEBUG Processing 779/847 atomic regions from SNP 233596 to 234196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,931 DEBUG Processing 651/1129 atomic regions from SNP 195107 to 195707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,949 DEBUG Processing 220/234 atomic regions from SNP 65864 to 66464 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:07,950 DEBUG Processing 791/881 atomic regions from SNP 237141 to 237741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,036 DEBUG Processing 525/642 atomic regions from SNP 157299 to 157899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,069 DEBUG Processing 678/1013 atomic regions from SNP 203144 to 203744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,122 DEBUG Processing 780/847 atomic regions from SNP 233896 to 234496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,257 DEBUG Processing 221/234 atomic regions from SNP 66164 to 66764 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:08,261 DEBUG Processing 792/881 atomic regions from SNP 237441 to 238041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,271 DEBUG Processing 652/1129 atomic regions from SNP 195407 to 196007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,392 DEBUG Processing 526/642 atomic regions from SNP 157599 to 158199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,420 DEBUG Processing 679/1013 atomic regions from SNP 203444 to 204044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,465 DEBUG Processing 781/847 atomic regions from SNP 234196 to 234796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,564 DEBUG Processing 222/234 atomic regions from SNP 66464 to 67064 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:08,571 DEBUG Processing 793/881 atomic regions from SNP 237741 to 238341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,610 DEBUG Processing 653/1129 atomic regions from SNP 195707 to 196307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,740 DEBUG Processing 527/642 atomic regions from SNP 157899 to 158499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,774 DEBUG Processing 680/1013 atomic regions from SNP 203744 to 204344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,809 DEBUG Processing 782/847 atomic regions from SNP 234496 to 235096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,872 DEBUG Processing 223/234 atomic regions from SNP 66764 to 67364 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:08,881 DEBUG Processing 794/881 atomic regions from SNP 238041 to 238641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,947 DEBUG Processing 654/1129 atomic regions from SNP 196007 to 196607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,090 DEBUG Processing 528/642 atomic regions from SNP 158199 to 158799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,124 DEBUG Processing 681/1013 atomic regions from SNP 204044 to 204644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,135 DEBUG Processing 783/847 atomic regions from SNP 234796 to 235396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,178 DEBUG Processing 224/234 atomic regions from SNP 67064 to 67664 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:09,189 DEBUG Processing 795/881 atomic regions from SNP 238341 to 238941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,281 DEBUG Processing 655/1129 atomic regions from SNP 196307 to 196907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,437 DEBUG Processing 529/642 atomic regions from SNP 158499 to 159099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,445 DEBUG Processing 784/847 atomic regions from SNP 235096 to 235696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,471 DEBUG Processing 682/1013 atomic regions from SNP 204344 to 204944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,491 DEBUG Processing 225/234 atomic regions from SNP 67364 to 67964 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:09,500 DEBUG Processing 796/881 atomic regions from SNP 238641 to 239241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,615 DEBUG Processing 656/1129 atomic regions from SNP 196607 to 197207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,754 DEBUG Processing 785/847 atomic regions from SNP 235396 to 235996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,788 DEBUG Processing 530/642 atomic regions from SNP 158799 to 159399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,805 DEBUG Processing 226/234 atomic regions from SNP 67664 to 68264 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:09,807 DEBUG Processing 683/1013 atomic regions from SNP 204644 to 205244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,812 DEBUG Processing 797/881 atomic regions from SNP 238941 to 239541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,946 DEBUG Processing 657/1129 atomic regions from SNP 196907 to 197507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,068 DEBUG Processing 786/847 atomic regions from SNP 235696 to 236296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,121 DEBUG Processing 227/234 atomic regions from SNP 67964 to 68564 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:10,127 DEBUG Processing 798/881 atomic regions from SNP 239241 to 239841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,132 DEBUG Processing 531/642 atomic regions from SNP 159099 to 159699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,148 DEBUG Processing 684/1013 atomic regions from SNP 204944 to 205544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,282 DEBUG Processing 658/1129 atomic regions from SNP 197207 to 197807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,377 DEBUG Processing 787/847 atomic regions from SNP 235996 to 236596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,433 DEBUG Processing 228/234 atomic regions from SNP 68264 to 68864 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:10,448 DEBUG Processing 799/881 atomic regions from SNP 239541 to 240141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,451 DEBUG Processing 532/642 atomic regions from SNP 159399 to 159999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,502 DEBUG Processing 685/1013 atomic regions from SNP 205244 to 205844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,619 DEBUG Processing 659/1129 atomic regions from SNP 197507 to 198107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,683 DEBUG Processing 788/847 atomic regions from SNP 236296 to 236896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,743 DEBUG Processing 229/234 atomic regions from SNP 68564 to 69164 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:10,760 DEBUG Processing 800/881 atomic regions from SNP 239841 to 240441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,769 DEBUG Processing 533/642 atomic regions from SNP 159699 to 160299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,829 DEBUG Processing 686/1013 atomic regions from SNP 205544 to 206144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,956 DEBUG Processing 660/1129 atomic regions from SNP 197807 to 198407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,987 DEBUG Processing 789/847 atomic regions from SNP 236596 to 237196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,053 DEBUG Processing 230/234 atomic regions from SNP 68864 to 69464 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:11,070 DEBUG Processing 801/881 atomic regions from SNP 240141 to 240741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,088 DEBUG Processing 534/642 atomic regions from SNP 159999 to 160599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,176 DEBUG Processing 687/1013 atomic regions from SNP 205844 to 206444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,291 DEBUG Processing 790/847 atomic regions from SNP 236896 to 237496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,292 DEBUG Processing 661/1129 atomic regions from SNP 198107 to 198707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,362 DEBUG Processing 231/234 atomic regions from SNP 69164 to 69764 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:11,378 DEBUG Processing 802/881 atomic regions from SNP 240441 to 241041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,421 DEBUG Processing 535/642 atomic regions from SNP 160299 to 160899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,525 DEBUG Processing 688/1013 atomic regions from SNP 206144 to 206744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,603 DEBUG Processing 791/847 atomic regions from SNP 237196 to 237796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,638 DEBUG Processing 662/1129 atomic regions from SNP 198407 to 199007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,675 DEBUG Processing 232/234 atomic regions from SNP 69464 to 70064 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:11,689 DEBUG Processing 803/881 atomic regions from SNP 240741 to 241341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,737 DEBUG Processing 536/642 atomic regions from SNP 160599 to 161199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,879 DEBUG Processing 689/1013 atomic regions from SNP 206444 to 207044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,914 DEBUG Processing 792/847 atomic regions from SNP 237496 to 238096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,978 DEBUG Processing 663/1129 atomic regions from SNP 198707 to 199307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,983 DEBUG Processing 233/234 atomic regions from SNP 69764 to 70364 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:11,994 DEBUG Processing 804/881 atomic regions from SNP 241041 to 241641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,064 DEBUG Processing 537/642 atomic regions from SNP 160899 to 161499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,239 DEBUG Processing 690/1013 atomic regions from SNP 206744 to 207344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,256 DEBUG Processing 793/847 atomic regions from SNP 237796 to 238396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,294 DEBUG Processing 234/234 atomic regions from SNP 70064 to 70664 for chrX (subchromosome 4 of 4). 2025-01-31 09:47:12,303 DEBUG Processing 805/881 atomic regions from SNP 241341 to 241941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,320 DEBUG Processing 664/1129 atomic regions from SNP 199007 to 199607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,402 DEBUG Processing 538/642 atomic regions from SNP 161199 to 161799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,509 DEBUG Unique SNPs positions in subchromosome 4: 70665 2025-01-31 09:47:12,574 DEBUG Processing 691/1013 atomic regions from SNP 207044 to 207644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,598 DEBUG Processing 794/847 atomic regions from SNP 238096 to 238696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,614 DEBUG Processing 806/881 atomic regions from SNP 241641 to 242241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,643 DEBUG Subchromosome time: 81.38224054197781, subchromosome SNPs: 70665 2025-01-31 09:47:12,643 DEBUG Estimated BADs: [1.63, 14.66, 3.26, 1.63, 0.81, 0.00, 3.26, 0.81, 3.26, 16.29, 1.63, 11.40, 3.26, 0.81, 3.26, 1.63, 3.26, 0.81, 0.81, 3.26, 1.63, 3.26, 1.63, 3.26, 1.63, 16.29] SNP counts: [3904, 737, 11498, 11160, 5347, 42, 5796, 14923, 3877, 154, 35549, 1691, 4601, 22665, 5460, 10702, 8207, 27469, 13050, 2428, 21466, 2963, 11670, 9144, 9907, 37] SNP IDs counts: [3904, 737, 11498, 11160, 5347, 42, 5796, 14923, 3877, 154, 35549, 1691, 4601, 22665, 5460, 10702, 8207, 27469, 13050, 2428, 21466, 2963, 11670, 9144, 9907, 37] Critical gap: 759431bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.56Mbp, 7.95Mbp, 14.69Mbp, 21.44Mbp, 26.91Mbp[1.11Mbp], 29.68Mbp[1.45Mbp], 39.09Mbp, 48.21Mbp, 50.55Mbp, 50.64Mbp, 73.44Mbp, 74.34Mbp, 77.42Mbp, 91.31Mbp, 94.82Mbp, 101.25Mbp, 106.01Mbp, 124.23Mbp[1.78Mbp], 134.02Mbp, 135.67Mbp, 150.43Mbp, 152.14Mbp, 159.25Mbp, 164.36Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:47:12,643 DEBUG chrX time: 81.3828369100811 s 2025-01-31 09:47:12,662 DEBUG Processing 665/1129 atomic regions from SNP 199307 to 199907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,726 DEBUG Processing 539/642 atomic regions from SNP 161499 to 162099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,904 DEBUG Processing 692/1013 atomic regions from SNP 207344 to 207944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,905 DEBUG chrX: Fitting background model for 25 segments 2025-01-31 09:47:12,925 DEBUG Processing 807/881 atomic regions from SNP 241941 to 242541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,940 DEBUG Processing 795/847 atomic regions from SNP 238396 to 238996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,002 DEBUG Processing 666/1129 atomic regions from SNP 199607 to 200207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,067 DEBUG Processing 540/642 atomic regions from SNP 161799 to 162399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,233 DEBUG Processing 693/1013 atomic regions from SNP 207644 to 208244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,234 DEBUG Processing 808/881 atomic regions from SNP 242241 to 242841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,281 DEBUG Processing 796/847 atomic regions from SNP 238696 to 239296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,362 DEBUG Processing 667/1129 atomic regions from SNP 199907 to 200507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,409 DEBUG Processing 541/642 atomic regions from SNP 162099 to 162699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,540 DEBUG Processing 809/881 atomic regions from SNP 242541 to 243141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,575 DEBUG Processing 694/1013 atomic regions from SNP 207944 to 208544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,610 DEBUG Processing 797/847 atomic regions from SNP 238996 to 239596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,729 DEBUG Processing 668/1129 atomic regions from SNP 200207 to 200807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,734 DEBUG Processing 542/642 atomic regions from SNP 162399 to 162999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,858 DEBUG Processing 810/881 atomic regions from SNP 242841 to 243441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,922 DEBUG Processing 695/1013 atomic regions from SNP 208244 to 208844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,933 DEBUG Processing 798/847 atomic regions from SNP 239296 to 239896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,070 DEBUG Processing 669/1129 atomic regions from SNP 200507 to 201107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,079 DEBUG Processing 543/642 atomic regions from SNP 162699 to 163299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,161 DEBUG Processing 811/881 atomic regions from SNP 243141 to 243741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,265 DEBUG Processing 799/847 atomic regions from SNP 239596 to 240196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,268 DEBUG Processing 696/1013 atomic regions from SNP 208544 to 209144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,405 DEBUG Processing 670/1129 atomic regions from SNP 200807 to 201407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,422 DEBUG Processing 544/642 atomic regions from SNP 162999 to 163599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,462 DEBUG Processing 812/881 atomic regions from SNP 243441 to 244041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,595 DEBUG Processing 697/1013 atomic regions from SNP 208844 to 209444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,601 DEBUG Processing 800/847 atomic regions from SNP 239896 to 240496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,742 DEBUG Processing 545/642 atomic regions from SNP 163299 to 163899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,742 DEBUG Processing 671/1129 atomic regions from SNP 201107 to 201707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,766 DEBUG Processing 813/881 atomic regions from SNP 243741 to 244341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,924 DEBUG Processing 698/1013 atomic regions from SNP 209144 to 209744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,938 DEBUG Processing 801/847 atomic regions from SNP 240196 to 240796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,068 DEBUG Processing 546/642 atomic regions from SNP 163599 to 164199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,071 DEBUG Processing 814/881 atomic regions from SNP 244041 to 244641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,082 DEBUG Processing 672/1129 atomic regions from SNP 201407 to 202007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,251 DEBUG Processing 699/1013 atomic regions from SNP 209444 to 210044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,271 DEBUG Processing 802/847 atomic regions from SNP 240496 to 241096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,377 DEBUG Processing 815/881 atomic regions from SNP 244341 to 244941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,404 DEBUG Processing 547/642 atomic regions from SNP 163899 to 164499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,419 DEBUG Processing 673/1129 atomic regions from SNP 201707 to 202307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,576 DEBUG Processing 700/1013 atomic regions from SNP 209744 to 210344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,601 DEBUG Processing 803/847 atomic regions from SNP 240796 to 241396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,681 DEBUG Processing 816/881 atomic regions from SNP 244641 to 245241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,736 DEBUG Processing 548/642 atomic regions from SNP 164199 to 164799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,776 DEBUG Processing 674/1129 atomic regions from SNP 202007 to 202607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,902 DEBUG Processing 701/1013 atomic regions from SNP 210044 to 210644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,935 DEBUG Processing 804/847 atomic regions from SNP 241096 to 241696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,982 DEBUG Processing 817/881 atomic regions from SNP 244941 to 245541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,087 DEBUG Processing 549/642 atomic regions from SNP 164499 to 165099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,139 DEBUG Processing 675/1129 atomic regions from SNP 202307 to 202907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,226 DEBUG Processing 702/1013 atomic regions from SNP 210344 to 210944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,257 DEBUG Processing 805/847 atomic regions from SNP 241396 to 241996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,283 DEBUG Processing 818/881 atomic regions from SNP 245241 to 245841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,448 DEBUG Processing 550/642 atomic regions from SNP 164799 to 165399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,474 DEBUG Processing 676/1129 atomic regions from SNP 202607 to 203207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,558 DEBUG Processing 703/1013 atomic regions from SNP 210644 to 211244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,564 DEBUG Processing 806/847 atomic regions from SNP 241696 to 242296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,590 DEBUG Processing 819/881 atomic regions from SNP 245541 to 246141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,782 DEBUG Processing 551/642 atomic regions from SNP 165099 to 165699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,826 DEBUG Processing 677/1129 atomic regions from SNP 202907 to 203507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,870 DEBUG Processing 807/847 atomic regions from SNP 241996 to 242596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,885 DEBUG Processing 704/1013 atomic regions from SNP 210944 to 211544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,894 DEBUG Processing 820/881 atomic regions from SNP 245841 to 246441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,126 DEBUG Processing 552/642 atomic regions from SNP 165399 to 165999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,187 DEBUG Processing 808/847 atomic regions from SNP 242296 to 242896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,188 DEBUG Processing 678/1129 atomic regions from SNP 203207 to 203807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,203 DEBUG Processing 821/881 atomic regions from SNP 246141 to 246741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,217 DEBUG Processing 705/1013 atomic regions from SNP 211244 to 211844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,459 DEBUG Processing 553/642 atomic regions from SNP 165699 to 166299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,516 DEBUG Processing 822/881 atomic regions from SNP 246441 to 247041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,517 DEBUG Processing 809/847 atomic regions from SNP 242596 to 243196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,549 DEBUG Processing 706/1013 atomic regions from SNP 211544 to 212144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,561 DEBUG Processing 679/1129 atomic regions from SNP 203507 to 204107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,778 DEBUG Processing 554/642 atomic regions from SNP 165999 to 166599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,828 DEBUG Processing 823/881 atomic regions from SNP 246741 to 247341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,858 DEBUG Processing 810/847 atomic regions from SNP 242896 to 243496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,879 DEBUG Processing 707/1013 atomic regions from SNP 211844 to 212444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,918 DEBUG Processing 680/1129 atomic regions from SNP 203807 to 204407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,097 DEBUG Processing 555/642 atomic regions from SNP 166299 to 166899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,133 DEBUG Processing 824/881 atomic regions from SNP 247041 to 247641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,165 DEBUG Processing 811/847 atomic regions from SNP 243196 to 243796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,206 DEBUG Processing 708/1013 atomic regions from SNP 212144 to 212744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,252 DEBUG Processing 681/1129 atomic regions from SNP 204107 to 204707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,418 DEBUG Processing 556/642 atomic regions from SNP 166599 to 167199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,437 DEBUG Processing 825/881 atomic regions from SNP 247341 to 247941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,471 DEBUG Processing 812/847 atomic regions from SNP 243496 to 244096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,533 DEBUG Processing 709/1013 atomic regions from SNP 212444 to 213044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,583 DEBUG Processing 682/1129 atomic regions from SNP 204407 to 205007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,739 DEBUG Processing 557/642 atomic regions from SNP 166899 to 167499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,744 DEBUG Processing 826/881 atomic regions from SNP 247641 to 248241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,778 DEBUG Processing 813/847 atomic regions from SNP 243796 to 244396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,861 DEBUG Processing 710/1013 atomic regions from SNP 212744 to 213344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,919 DEBUG Processing 683/1129 atomic regions from SNP 204707 to 205307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,055 DEBUG Processing 827/881 atomic regions from SNP 247941 to 248541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,073 DEBUG Processing 558/642 atomic regions from SNP 167199 to 167799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,087 DEBUG Processing 814/847 atomic regions from SNP 244096 to 244696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,188 DEBUG Processing 711/1013 atomic regions from SNP 213044 to 213644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,253 DEBUG Processing 684/1129 atomic regions from SNP 205007 to 205607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,362 DEBUG Processing 828/881 atomic regions from SNP 248241 to 248841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,418 DEBUG Processing 815/847 atomic regions from SNP 244396 to 244996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,428 DEBUG Processing 559/642 atomic regions from SNP 167499 to 168099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,517 DEBUG Processing 712/1013 atomic regions from SNP 213344 to 213944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,591 DEBUG Processing 685/1129 atomic regions from SNP 205307 to 205907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,670 DEBUG Processing 829/881 atomic regions from SNP 248541 to 249141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,736 DEBUG Processing 816/847 atomic regions from SNP 244696 to 245296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,771 DEBUG Processing 560/642 atomic regions from SNP 167799 to 168399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,841 DEBUG Processing 713/1013 atomic regions from SNP 213644 to 214244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,926 DEBUG Processing 686/1129 atomic regions from SNP 205607 to 206207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,969 DEBUG Processing 830/881 atomic regions from SNP 248841 to 249441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,036 DEBUG Processing 817/847 atomic regions from SNP 244996 to 245596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,128 DEBUG Processing 561/642 atomic regions from SNP 168099 to 168699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,164 DEBUG Processing 714/1013 atomic regions from SNP 213944 to 214544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,272 DEBUG Processing 687/1129 atomic regions from SNP 205907 to 206507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,272 DEBUG Processing 831/881 atomic regions from SNP 249141 to 249741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,354 DEBUG Processing 818/847 atomic regions from SNP 245296 to 245896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,473 DEBUG Processing 562/642 atomic regions from SNP 168399 to 168999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,505 DEBUG Processing 715/1013 atomic regions from SNP 214244 to 214844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,579 DEBUG Processing 832/881 atomic regions from SNP 249441 to 250041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,609 DEBUG Processing 688/1129 atomic regions from SNP 206207 to 206807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,680 DEBUG Processing 819/847 atomic regions from SNP 245596 to 246196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,812 DEBUG Processing 563/642 atomic regions from SNP 168699 to 169299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,829 DEBUG Processing 716/1013 atomic regions from SNP 214544 to 215144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,884 DEBUG Processing 833/881 atomic regions from SNP 249741 to 250341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,946 DEBUG Processing 689/1129 atomic regions from SNP 206507 to 207107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,995 DEBUG Processing 820/847 atomic regions from SNP 245896 to 246496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,153 DEBUG Processing 717/1013 atomic regions from SNP 214844 to 215444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,162 DEBUG Processing 564/642 atomic regions from SNP 168999 to 169599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,189 DEBUG Processing 834/881 atomic regions from SNP 250041 to 250641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,284 DEBUG Processing 690/1129 atomic regions from SNP 206807 to 207407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,298 DEBUG Processing 821/847 atomic regions from SNP 246196 to 246796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,482 DEBUG Processing 718/1013 atomic regions from SNP 215144 to 215744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,498 DEBUG Processing 835/881 atomic regions from SNP 250341 to 250941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,511 DEBUG Processing 565/642 atomic regions from SNP 169299 to 169899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,608 DEBUG Processing 822/847 atomic regions from SNP 246496 to 247096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,624 DEBUG Processing 691/1129 atomic regions from SNP 207107 to 207707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,808 DEBUG Processing 836/881 atomic regions from SNP 250641 to 251241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,811 DEBUG Processing 719/1013 atomic regions from SNP 215444 to 216044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,853 DEBUG Processing 566/642 atomic regions from SNP 169599 to 170199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,913 DEBUG Processing 823/847 atomic regions from SNP 246796 to 247396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,960 DEBUG Processing 692/1129 atomic regions from SNP 207407 to 208007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,114 DEBUG Processing 837/881 atomic regions from SNP 250941 to 251541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,138 DEBUG Processing 720/1013 atomic regions from SNP 215744 to 216344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,170 DEBUG Processing 567/642 atomic regions from SNP 169899 to 170499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,221 DEBUG Processing 824/847 atomic regions from SNP 247096 to 247696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,296 DEBUG Processing 693/1129 atomic regions from SNP 207707 to 208307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,420 DEBUG Processing 838/881 atomic regions from SNP 251241 to 251841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,465 DEBUG Processing 721/1013 atomic regions from SNP 216044 to 216644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,487 DEBUG Processing 568/642 atomic regions from SNP 170199 to 170799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,542 DEBUG Processing 825/847 atomic regions from SNP 247396 to 247996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,636 DEBUG Processing 694/1129 atomic regions from SNP 208007 to 208607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,733 DEBUG Processing 839/881 atomic regions from SNP 251541 to 252141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,800 DEBUG Processing 722/1013 atomic regions from SNP 216344 to 216944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,806 DEBUG Processing 569/642 atomic regions from SNP 170499 to 171099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,852 DEBUG Processing 826/847 atomic regions from SNP 247696 to 248296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,977 DEBUG Processing 695/1129 atomic regions from SNP 208307 to 208907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,045 DEBUG Processing 840/881 atomic regions from SNP 251841 to 252441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,122 DEBUG Processing 570/642 atomic regions from SNP 170799 to 171399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,144 DEBUG Processing 723/1013 atomic regions from SNP 216644 to 217244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,160 DEBUG Processing 827/847 atomic regions from SNP 247996 to 248596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,320 DEBUG Processing 696/1129 atomic regions from SNP 208607 to 209207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,356 DEBUG Processing 841/881 atomic regions from SNP 252141 to 252741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,441 DEBUG Processing 571/642 atomic regions from SNP 171099 to 171699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,484 DEBUG Processing 724/1013 atomic regions from SNP 216944 to 217544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,484 DEBUG Processing 828/847 atomic regions from SNP 248296 to 248896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,659 DEBUG Processing 697/1129 atomic regions from SNP 208907 to 209507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,663 DEBUG Processing 842/881 atomic regions from SNP 252441 to 253041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,759 DEBUG Processing 572/642 atomic regions from SNP 171399 to 171999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,801 DEBUG Processing 829/847 atomic regions from SNP 248596 to 249196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,835 DEBUG Processing 725/1013 atomic regions from SNP 217244 to 217844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,967 DEBUG Processing 843/881 atomic regions from SNP 252741 to 253341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,995 DEBUG Processing 698/1129 atomic regions from SNP 209207 to 209807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,081 DEBUG Processing 573/642 atomic regions from SNP 171699 to 172299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,107 DEBUG Processing 830/847 atomic regions from SNP 248896 to 249496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,188 DEBUG Processing 726/1013 atomic regions from SNP 217544 to 218144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,265 DEBUG Processing 844/881 atomic regions from SNP 253041 to 253641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,329 DEBUG Processing 699/1129 atomic regions from SNP 209507 to 210107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,401 DEBUG Processing 574/642 atomic regions from SNP 171999 to 172599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,420 DEBUG Processing 831/847 atomic regions from SNP 249196 to 249796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,527 DEBUG Processing 727/1013 atomic regions from SNP 217844 to 218444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,565 DEBUG Processing 845/881 atomic regions from SNP 253341 to 253941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,665 DEBUG Processing 700/1129 atomic regions from SNP 209807 to 210407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,722 DEBUG Processing 575/642 atomic regions from SNP 172299 to 172899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,752 DEBUG Processing 832/847 atomic regions from SNP 249496 to 250096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,851 DEBUG Processing 728/1013 atomic regions from SNP 218144 to 218744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,867 DEBUG Processing 846/881 atomic regions from SNP 253641 to 254241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,001 DEBUG Processing 701/1129 atomic regions from SNP 210107 to 210707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,041 DEBUG Processing 576/642 atomic regions from SNP 172599 to 173199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,091 DEBUG Processing 833/847 atomic regions from SNP 249796 to 250396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,167 DEBUG Processing 847/881 atomic regions from SNP 253941 to 254541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,172 DEBUG Processing 729/1013 atomic regions from SNP 218444 to 219044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,334 DEBUG Processing 702/1129 atomic regions from SNP 210407 to 211007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,358 DEBUG Processing 577/642 atomic regions from SNP 172899 to 173499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,421 DEBUG Processing 834/847 atomic regions from SNP 250096 to 250696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,470 DEBUG Processing 848/881 atomic regions from SNP 254241 to 254841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,496 DEBUG Processing 730/1013 atomic regions from SNP 218744 to 219344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,670 DEBUG Processing 703/1129 atomic regions from SNP 210707 to 211307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,674 DEBUG Processing 578/642 atomic regions from SNP 173199 to 173799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,727 DEBUG Processing 835/847 atomic regions from SNP 250396 to 250996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,772 DEBUG Processing 849/881 atomic regions from SNP 254541 to 255141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,817 DEBUG Processing 731/1013 atomic regions from SNP 219044 to 219644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,990 DEBUG Processing 579/642 atomic regions from SNP 173499 to 174099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,007 DEBUG Processing 704/1129 atomic regions from SNP 211007 to 211607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,058 DEBUG Processing 836/847 atomic regions from SNP 250696 to 251296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,077 DEBUG Processing 850/881 atomic regions from SNP 254841 to 255441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,135 DEBUG Processing 732/1013 atomic regions from SNP 219344 to 219944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,307 DEBUG Processing 580/642 atomic regions from SNP 173799 to 174399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,344 DEBUG Processing 705/1129 atomic regions from SNP 211307 to 211907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,385 DEBUG Processing 851/881 atomic regions from SNP 255141 to 255741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,386 DEBUG Processing 837/847 atomic regions from SNP 250996 to 251596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,455 DEBUG Processing 733/1013 atomic regions from SNP 219644 to 220244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,622 DEBUG Processing 581/642 atomic regions from SNP 174099 to 174699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,683 DEBUG Processing 706/1129 atomic regions from SNP 211607 to 212207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,692 DEBUG Processing 838/847 atomic regions from SNP 251296 to 251896 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,694 DEBUG Processing 852/881 atomic regions from SNP 255441 to 256041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,778 DEBUG Processing 734/1013 atomic regions from SNP 219944 to 220544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,950 DEBUG Processing 582/642 atomic regions from SNP 174399 to 174999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,000 DEBUG Processing 839/847 atomic regions from SNP 251596 to 252196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,004 DEBUG Processing 853/881 atomic regions from SNP 255741 to 256341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,025 DEBUG Processing 707/1129 atomic regions from SNP 211907 to 212507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,112 DEBUG Processing 735/1013 atomic regions from SNP 220244 to 220844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,304 DEBUG Processing 583/642 atomic regions from SNP 174699 to 175299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,312 DEBUG Processing 854/881 atomic regions from SNP 256041 to 256641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,315 DEBUG Processing 840/847 atomic regions from SNP 251896 to 252496 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,367 DEBUG Processing 708/1129 atomic regions from SNP 212207 to 212807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,450 DEBUG Processing 736/1013 atomic regions from SNP 220544 to 221144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,625 DEBUG Processing 855/881 atomic regions from SNP 256341 to 256941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,631 DEBUG Processing 584/642 atomic regions from SNP 174999 to 175599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,646 DEBUG Processing 841/847 atomic regions from SNP 252196 to 252796 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,709 DEBUG Processing 709/1129 atomic regions from SNP 212507 to 213107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,801 DEBUG Processing 737/1013 atomic regions from SNP 220844 to 221444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,930 DEBUG Processing 856/881 atomic regions from SNP 256641 to 257241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,957 DEBUG Processing 585/642 atomic regions from SNP 175299 to 175899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,972 DEBUG Processing 842/847 atomic regions from SNP 252496 to 253096 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,076 DEBUG Processing 710/1129 atomic regions from SNP 212807 to 213407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,124 DEBUG Processing 738/1013 atomic regions from SNP 221144 to 221744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,239 DEBUG Processing 857/881 atomic regions from SNP 256941 to 257541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,277 DEBUG Processing 586/642 atomic regions from SNP 175599 to 176199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,294 DEBUG Processing 843/847 atomic regions from SNP 252796 to 253396 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,422 DEBUG Processing 711/1129 atomic regions from SNP 213107 to 213707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,452 DEBUG Processing 739/1013 atomic regions from SNP 221444 to 222044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,548 DEBUG Processing 858/881 atomic regions from SNP 257241 to 257841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,599 DEBUG Processing 587/642 atomic regions from SNP 175899 to 176499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,602 DEBUG Processing 844/847 atomic regions from SNP 253096 to 253696 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,769 DEBUG Processing 712/1129 atomic regions from SNP 213407 to 214007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,788 DEBUG Processing 740/1013 atomic regions from SNP 221744 to 222344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,857 DEBUG Processing 859/881 atomic regions from SNP 257541 to 258141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,907 DEBUG Processing 845/847 atomic regions from SNP 253396 to 253996 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,918 DEBUG Processing 588/642 atomic regions from SNP 176199 to 176799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,107 DEBUG Processing 713/1129 atomic regions from SNP 213707 to 214307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,113 DEBUG Processing 741/1013 atomic regions from SNP 222044 to 222644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,162 DEBUG Processing 860/881 atomic regions from SNP 257841 to 258441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,214 DEBUG Processing 846/847 atomic regions from SNP 253696 to 254296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,239 DEBUG Processing 589/642 atomic regions from SNP 176499 to 177099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,440 DEBUG Processing 742/1013 atomic regions from SNP 222344 to 222944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,445 DEBUG Processing 714/1129 atomic regions from SNP 214007 to 214607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,468 DEBUG Processing 861/881 atomic regions from SNP 258141 to 258741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,521 DEBUG Processing 847/847 atomic regions from SNP 253996 to 254596 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,557 DEBUG Processing 590/642 atomic regions from SNP 176799 to 177399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,720 DEBUG Unique SNPs positions in subchromosome 1: 254597 2025-01-31 09:47:29,777 DEBUG Processing 862/881 atomic regions from SNP 258441 to 259041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,785 DEBUG Processing 715/1129 atomic regions from SNP 214307 to 214907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,790 DEBUG Processing 743/1013 atomic regions from SNP 222644 to 223244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,899 DEBUG Processing 591/642 atomic regions from SNP 177099 to 177699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,083 DEBUG Processing 863/881 atomic regions from SNP 258741 to 259341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,122 DEBUG Processing 716/1129 atomic regions from SNP 214607 to 215207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,138 DEBUG Processing 744/1013 atomic regions from SNP 222944 to 223544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,252 DEBUG Processing 592/642 atomic regions from SNP 177399 to 177999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,390 DEBUG Processing 864/881 atomic regions from SNP 259041 to 259641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,461 DEBUG Processing 717/1129 atomic regions from SNP 214907 to 215507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,482 DEBUG Processing 745/1013 atomic regions from SNP 223244 to 223844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,584 DEBUG Processing 593/642 atomic regions from SNP 177699 to 178299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,692 DEBUG Processing 865/881 atomic regions from SNP 259341 to 259941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,799 DEBUG Processing 718/1129 atomic regions from SNP 215207 to 215807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,837 DEBUG Processing 746/1013 atomic regions from SNP 223544 to 224144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,922 DEBUG Processing 594/642 atomic regions from SNP 177999 to 178599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,993 DEBUG Processing 866/881 atomic regions from SNP 259641 to 260241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,135 DEBUG Processing 719/1129 atomic regions from SNP 215507 to 216107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,163 DEBUG Processing 747/1013 atomic regions from SNP 223844 to 224444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,268 DEBUG Processing 595/642 atomic regions from SNP 178299 to 178899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,292 DEBUG Processing 867/881 atomic regions from SNP 259941 to 260541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,470 DEBUG Processing 720/1129 atomic regions from SNP 215807 to 216407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,513 DEBUG Processing 748/1013 atomic regions from SNP 224144 to 224744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,591 DEBUG Processing 868/881 atomic regions from SNP 260241 to 260841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,622 DEBUG Processing 596/642 atomic regions from SNP 178599 to 179199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,811 DEBUG Processing 721/1129 atomic regions from SNP 216107 to 216707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,874 DEBUG Processing 749/1013 atomic regions from SNP 224444 to 225044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,896 DEBUG Processing 869/881 atomic regions from SNP 260541 to 261141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,971 DEBUG Processing 597/642 atomic regions from SNP 178899 to 179499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,150 DEBUG Processing 722/1129 atomic regions from SNP 216407 to 217007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,205 DEBUG Processing 870/881 atomic regions from SNP 260841 to 261441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,220 DEBUG Processing 750/1013 atomic regions from SNP 224744 to 225344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,306 DEBUG Processing 598/642 atomic regions from SNP 179199 to 179799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,486 DEBUG Processing 723/1129 atomic regions from SNP 216707 to 217307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,507 DEBUG Processing 871/881 atomic regions from SNP 261141 to 261741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,569 DEBUG Processing 751/1013 atomic regions from SNP 225044 to 225644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,638 DEBUG Processing 599/642 atomic regions from SNP 179499 to 180099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,816 DEBUG Processing 872/881 atomic regions from SNP 261441 to 262041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,839 DEBUG Processing 724/1129 atomic regions from SNP 217007 to 217607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,903 DEBUG Processing 752/1013 atomic regions from SNP 225344 to 225944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,963 DEBUG Processing 600/642 atomic regions from SNP 179799 to 180399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,128 DEBUG Processing 873/881 atomic regions from SNP 261741 to 262341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,200 DEBUG Processing 725/1129 atomic regions from SNP 217307 to 217907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,246 DEBUG Processing 753/1013 atomic regions from SNP 225644 to 226244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,302 DEBUG Processing 601/642 atomic regions from SNP 180099 to 180699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,440 DEBUG Processing 874/881 atomic regions from SNP 262041 to 262641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,568 DEBUG Processing 726/1129 atomic regions from SNP 217607 to 218207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,596 DEBUG Processing 754/1013 atomic regions from SNP 225944 to 226544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,639 DEBUG Processing 602/642 atomic regions from SNP 180399 to 180999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,742 DEBUG Processing 875/881 atomic regions from SNP 262341 to 262941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,928 DEBUG Processing 727/1129 atomic regions from SNP 217907 to 218507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,939 DEBUG Processing 755/1013 atomic regions from SNP 226244 to 226844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,969 DEBUG Processing 603/642 atomic regions from SNP 180699 to 181299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,052 DEBUG Processing 876/881 atomic regions from SNP 262641 to 263241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,295 DEBUG Processing 728/1129 atomic regions from SNP 218207 to 218807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,297 DEBUG Processing 756/1013 atomic regions from SNP 226544 to 227144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,304 DEBUG Processing 604/642 atomic regions from SNP 180999 to 181599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,358 DEBUG Processing 877/881 atomic regions from SNP 262941 to 263541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,633 DEBUG Processing 757/1013 atomic regions from SNP 226844 to 227444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,649 DEBUG Processing 729/1129 atomic regions from SNP 218507 to 219107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,660 DEBUG Processing 605/642 atomic regions from SNP 181299 to 181899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,666 DEBUG Processing 878/881 atomic regions from SNP 263241 to 263841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,980 DEBUG Processing 758/1013 atomic regions from SNP 227144 to 227744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,982 DEBUG Processing 879/881 atomic regions from SNP 263541 to 264141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,998 DEBUG Processing 730/1129 atomic regions from SNP 218807 to 219407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,013 DEBUG Processing 606/642 atomic regions from SNP 181599 to 182199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,300 DEBUG Processing 880/881 atomic regions from SNP 263841 to 264441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,327 DEBUG Processing 759/1013 atomic regions from SNP 227444 to 228044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,350 DEBUG Processing 731/1129 atomic regions from SNP 219107 to 219707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,355 DEBUG Processing 607/642 atomic regions from SNP 181899 to 182499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,609 DEBUG Processing 881/881 atomic regions from SNP 264141 to 264741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,660 DEBUG Processing 760/1013 atomic regions from SNP 227744 to 228344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,697 DEBUG Processing 732/1129 atomic regions from SNP 219407 to 220007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,703 DEBUG Processing 608/642 atomic regions from SNP 182199 to 182799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,816 DEBUG Unique SNPs positions in subchromosome 1: 264742 2025-01-31 09:47:35,998 DEBUG Processing 761/1013 atomic regions from SNP 228044 to 228644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,037 DEBUG Processing 609/642 atomic regions from SNP 182499 to 183099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,047 DEBUG Processing 733/1129 atomic regions from SNP 219707 to 220307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,334 DEBUG Processing 762/1013 atomic regions from SNP 228344 to 228944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,368 DEBUG Processing 610/642 atomic regions from SNP 182799 to 183399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,391 DEBUG Processing 734/1129 atomic regions from SNP 220007 to 220607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,663 DEBUG Processing 763/1013 atomic regions from SNP 228644 to 229244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,712 DEBUG Processing 611/642 atomic regions from SNP 183099 to 183699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,730 DEBUG Processing 735/1129 atomic regions from SNP 220307 to 220907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,993 DEBUG Processing 764/1013 atomic regions from SNP 228944 to 229544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,031 DEBUG Processing 612/642 atomic regions from SNP 183399 to 183999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,072 DEBUG Processing 736/1129 atomic regions from SNP 220607 to 221207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,322 DEBUG Processing 765/1013 atomic regions from SNP 229244 to 229844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,353 DEBUG Processing 613/642 atomic regions from SNP 183699 to 184299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,413 DEBUG Processing 737/1129 atomic regions from SNP 220907 to 221507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,650 DEBUG Processing 766/1013 atomic regions from SNP 229544 to 230144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,672 DEBUG Processing 614/642 atomic regions from SNP 183999 to 184599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,751 DEBUG Processing 738/1129 atomic regions from SNP 221207 to 221807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,979 DEBUG Processing 767/1013 atomic regions from SNP 229844 to 230444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,992 DEBUG Processing 615/642 atomic regions from SNP 184299 to 184899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,091 DEBUG Processing 739/1129 atomic regions from SNP 221507 to 222107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,308 DEBUG Processing 768/1013 atomic regions from SNP 230144 to 230744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,333 DEBUG Processing 616/642 atomic regions from SNP 184599 to 185199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,431 DEBUG Processing 740/1129 atomic regions from SNP 221807 to 222407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,637 DEBUG Processing 769/1013 atomic regions from SNP 230444 to 231044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,694 DEBUG Processing 617/642 atomic regions from SNP 184899 to 185499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,773 DEBUG Processing 741/1129 atomic regions from SNP 222107 to 222707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,967 DEBUG Processing 770/1013 atomic regions from SNP 230744 to 231344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,050 DEBUG Processing 618/642 atomic regions from SNP 185199 to 185799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,140 DEBUG Processing 742/1129 atomic regions from SNP 222407 to 223007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,294 DEBUG Processing 771/1013 atomic regions from SNP 231044 to 231644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,403 DEBUG Processing 619/642 atomic regions from SNP 185499 to 186099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,488 DEBUG Processing 743/1129 atomic regions from SNP 222707 to 223307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,617 DEBUG Processing 772/1013 atomic regions from SNP 231344 to 231944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,726 DEBUG Processing 620/642 atomic regions from SNP 185799 to 186399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,855 DEBUG Processing 744/1129 atomic regions from SNP 223007 to 223607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,939 DEBUG Processing 773/1013 atomic regions from SNP 231644 to 232244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,039 DEBUG Processing 621/642 atomic regions from SNP 186099 to 186699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,231 DEBUG Processing 745/1129 atomic regions from SNP 223307 to 223907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,264 DEBUG Processing 774/1013 atomic regions from SNP 231944 to 232544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,354 DEBUG Processing 622/642 atomic regions from SNP 186399 to 186999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,593 DEBUG Processing 746/1129 atomic regions from SNP 223607 to 224207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,594 DEBUG Processing 775/1013 atomic regions from SNP 232244 to 232844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,664 DEBUG Processing 623/642 atomic regions from SNP 186699 to 187299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,925 DEBUG Processing 776/1013 atomic regions from SNP 232544 to 233144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,962 DEBUG Processing 747/1129 atomic regions from SNP 223907 to 224507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,978 DEBUG Processing 624/642 atomic regions from SNP 186999 to 187599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,256 DEBUG Processing 777/1013 atomic regions from SNP 232844 to 233444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,297 DEBUG Processing 625/642 atomic regions from SNP 187299 to 187899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,313 DEBUG Processing 748/1129 atomic regions from SNP 224207 to 224807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,587 DEBUG Processing 778/1013 atomic regions from SNP 233144 to 233744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,617 DEBUG Processing 626/642 atomic regions from SNP 187599 to 188199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,667 DEBUG Processing 749/1129 atomic regions from SNP 224507 to 225107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,916 DEBUG Processing 779/1013 atomic regions from SNP 233444 to 234044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,937 DEBUG Processing 627/642 atomic regions from SNP 187899 to 188499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,030 DEBUG Processing 750/1129 atomic regions from SNP 224807 to 225407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,248 DEBUG Processing 780/1013 atomic regions from SNP 233744 to 234344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,257 DEBUG Processing 628/642 atomic regions from SNP 188199 to 188799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,394 DEBUG Processing 751/1129 atomic regions from SNP 225107 to 225707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,579 DEBUG Processing 781/1013 atomic regions from SNP 234044 to 234644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,600 DEBUG Processing 629/642 atomic regions from SNP 188499 to 189099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,759 DEBUG Processing 752/1129 atomic regions from SNP 225407 to 226007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,907 DEBUG Processing 782/1013 atomic regions from SNP 234344 to 234944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,955 DEBUG Processing 630/642 atomic regions from SNP 188799 to 189399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,126 DEBUG Processing 753/1129 atomic regions from SNP 225707 to 226307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,236 DEBUG Processing 783/1013 atomic regions from SNP 234644 to 235244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,304 DEBUG Processing 631/642 atomic regions from SNP 189099 to 189699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,482 DEBUG Processing 754/1129 atomic regions from SNP 226007 to 226607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,562 DEBUG Processing 784/1013 atomic regions from SNP 234944 to 235544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,626 DEBUG Processing 632/642 atomic regions from SNP 189399 to 189999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,822 DEBUG Processing 755/1129 atomic regions from SNP 226307 to 226907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,888 DEBUG Processing 785/1013 atomic regions from SNP 235244 to 235844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,941 DEBUG Processing 633/642 atomic regions from SNP 189699 to 190299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,176 DEBUG Processing 756/1129 atomic regions from SNP 226607 to 227207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,215 DEBUG Processing 786/1013 atomic regions from SNP 235544 to 236144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,254 DEBUG Processing 634/642 atomic regions from SNP 189999 to 190599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,547 DEBUG Processing 787/1013 atomic regions from SNP 235844 to 236444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,551 DEBUG Processing 757/1129 atomic regions from SNP 226907 to 227507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,596 DEBUG Processing 635/642 atomic regions from SNP 190299 to 190899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,878 DEBUG Processing 788/1013 atomic regions from SNP 236144 to 236744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,914 DEBUG Processing 758/1129 atomic regions from SNP 227207 to 227807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,948 DEBUG Processing 636/642 atomic regions from SNP 190599 to 191199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,208 DEBUG Processing 789/1013 atomic regions from SNP 236444 to 237044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,256 DEBUG Processing 759/1129 atomic regions from SNP 227507 to 228107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,290 DEBUG Processing 637/642 atomic regions from SNP 190899 to 191499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,555 DEBUG Processing 790/1013 atomic regions from SNP 236744 to 237344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,609 DEBUG Processing 638/642 atomic regions from SNP 191199 to 191799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,612 DEBUG Processing 760/1129 atomic regions from SNP 227807 to 228407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,884 DEBUG Processing 791/1013 atomic regions from SNP 237044 to 237644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,956 DEBUG Processing 639/642 atomic regions from SNP 191499 to 192099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,989 DEBUG Processing 761/1129 atomic regions from SNP 228107 to 228707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,209 DEBUG Processing 792/1013 atomic regions from SNP 237344 to 237944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,310 DEBUG Processing 640/642 atomic regions from SNP 191799 to 192399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,370 DEBUG Processing 762/1129 atomic regions from SNP 228407 to 229007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,535 DEBUG Processing 793/1013 atomic regions from SNP 237644 to 238244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,672 DEBUG Processing 641/642 atomic regions from SNP 192099 to 192699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,742 DEBUG Processing 763/1129 atomic regions from SNP 228707 to 229307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,870 DEBUG Processing 794/1013 atomic regions from SNP 237944 to 238544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,027 DEBUG Processing 642/642 atomic regions from SNP 192399 to 192999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,122 DEBUG Processing 764/1129 atomic regions from SNP 229007 to 229607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,208 DEBUG Processing 795/1013 atomic regions from SNP 238244 to 238844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,263 DEBUG Unique SNPs positions in subchromosome 2: 193000 2025-01-31 09:47:47,501 DEBUG Processing 765/1129 atomic regions from SNP 229307 to 229907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,550 DEBUG Processing 796/1013 atomic regions from SNP 238544 to 239144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,876 DEBUG Processing 797/1013 atomic regions from SNP 238844 to 239444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,879 DEBUG Processing 766/1129 atomic regions from SNP 229607 to 230207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,197 DEBUG Processing 798/1013 atomic regions from SNP 239144 to 239744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,239 DEBUG Processing 767/1129 atomic regions from SNP 229907 to 230507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,513 DEBUG Processing 799/1013 atomic regions from SNP 239444 to 240044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,582 DEBUG Processing 768/1129 atomic regions from SNP 230207 to 230807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,828 DEBUG Processing 800/1013 atomic regions from SNP 239744 to 240344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,913 DEBUG Processing 769/1129 atomic regions from SNP 230507 to 231107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,144 DEBUG Processing 801/1013 atomic regions from SNP 240044 to 240644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,272 DEBUG Processing 770/1129 atomic regions from SNP 230807 to 231407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,487 DEBUG Processing 802/1013 atomic regions from SNP 240344 to 240944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,641 DEBUG Processing 771/1129 atomic regions from SNP 231107 to 231707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,813 DEBUG Processing 803/1013 atomic regions from SNP 240644 to 241244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,979 DEBUG Processing 772/1129 atomic regions from SNP 231407 to 232007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,136 DEBUG Processing 804/1013 atomic regions from SNP 240944 to 241544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,326 DEBUG Processing 773/1129 atomic regions from SNP 231707 to 232307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,461 DEBUG Processing 805/1013 atomic regions from SNP 241244 to 241844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,694 DEBUG Processing 774/1129 atomic regions from SNP 232007 to 232607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,784 DEBUG Processing 806/1013 atomic regions from SNP 241544 to 242144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,995 DEBUG Subchromosome time: 315.6665454269387, subchromosome SNPs: 254597 2025-01-31 09:47:50,996 DEBUG Estimated BADs: [0.80, 2.39, 16.70, 2.39, 4.77, 0.40, 1.19, 0.60, 2.39, 0.27, 2.39, 0.40, 2.39, 0.34, 0.80, 2.39, 1.19, 14.31, 2.39, 4.77, 0.80, 4.77, 11.93, 4.77, 9.54, 2.39, 9.54, 1.19, 9.54, 2.39, 9.54, 4.77] SNP counts: [26602, 6486, 1021, 9671, 15892, 3612, 8683, 8127, 6001, 14396, 9103, 5298, 11153, 9545, 6902, 12674, 11219, 438, 6968, 2311, 1449, 6899, 3343, 9486, 9115, 8048, 687, 7472, 7338, 1679, 9272, 13707] SNP IDs counts: [26602, 6486, 1021, 9671, 15892, 3612, 8683, 8127, 6001, 14396, 9103, 5298, 11153, 9545, 6902, 12674, 11219, 438, 6968, 2311, 1449, 6899, 3343, 9486, 9115, 8048, 687, 7472, 7338, 1679, 9272, 13707] Critical gap: 677178bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 20.66Mbp, 24.32Mbp, 24.86Mbp, 30.46Mbp, 39.06Mbp, 41.24Mbp, 46.32Mbp, 51.10Mbp, 54.33Mbp, 63.46Mbp, 68.43Mbp, 71.78Mbp, 77.87Mbp, 83.85Mbp, 88.01Mbp, 97.41Mbp, 103.65Mbp, 103.88Mbp, 107.85Mbp, 109.17Mbp, 110.09Mbp, 113.73Mbp, 115.49Mbp, 120.46Mbp, 125.34Mbp, 129.72Mbp, 130.13Mbp, 134.17Mbp, 138.20Mbp, 139.15Mbp, 144.11Mbp, 151.83Mbp] 2025-01-31 09:47:50,996 DEBUG chr5 time: 315.66709882300347 s 2025-01-31 09:47:51,069 DEBUG Processing 775/1129 atomic regions from SNP 232307 to 232907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,110 DEBUG Subchromosome time: 320.82436172501184, subchromosome SNPs: 264742 2025-01-31 09:47:51,111 DEBUG Estimated BADs: [0.87, 5.21, 1.30, 7.82, 1.30, 13.03, 2.61, 0.87, 23.45, 2.61, 0.87, 2.61, 7.82, 26.06, 2.61, 20.85, 7.82, 0.87, 5.21, 1.30, 5.21, 2.61, 0.65, 2.61, 0.33, 2.61, 0.65] SNP counts: [9490, 2339, 13864, 1330, 18117, 413, 18869, 13326, 844, 33829, 13518, 7780, 7028, 5001, 5827, 4990, 23065, 8095, 5409, 3609, 30663, 3531, 7195, 5705, 7493, 5402, 8010] SNP IDs counts: [9490, 2339, 13864, 1330, 18117, 413, 18869, 13326, 844, 33829, 13518, 7780, 7028, 5001, 5827, 4990, 23065, 8095, 5409, 3609, 30663, 3531, 7195, 5705, 7493, 5402, 8010] Critical gap: 700749bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.90Mbp, 10.21Mbp, 19.16Mbp, 19.89Mbp, 30.59Mbp, 30.81Mbp, 41.78Mbp, 51.15Mbp, 51.60Mbp, 71.19Mbp, 79.52Mbp, 83.97Mbp, 87.73Mbp, 90.41Mbp, 94.36Mbp, 97.13Mbp, 109.87Mbp, 115.04Mbp, 118.02Mbp, 120.04Mbp, 137.09Mbp, 139.09Mbp, 143.84Mbp, 146.99Mbp, 151.74Mbp, 154.71Mbp, 160.04Mbp] 2025-01-31 09:47:51,111 DEBUG chr3 time: 320.82510183996055 s 2025-01-31 09:47:51,115 DEBUG Processing 807/1013 atomic regions from SNP 241844 to 242444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,221 DEBUG chr5: Fitting background model for 32 segments 2025-01-31 09:47:51,344 DEBUG chr3: Fitting background model for 27 segments 2025-01-31 09:47:51,447 DEBUG Processing 776/1129 atomic regions from SNP 232607 to 233207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,454 DEBUG Processing 808/1013 atomic regions from SNP 242144 to 242744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,786 DEBUG Processing 809/1013 atomic regions from SNP 242444 to 243044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,812 DEBUG Processing 777/1129 atomic regions from SNP 232907 to 233507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,104 DEBUG Processing 810/1013 atomic regions from SNP 242744 to 243344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,159 DEBUG Processing 778/1129 atomic regions from SNP 233207 to 233807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,359 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:47:52,433 DEBUG Processing 811/1013 atomic regions from SNP 243044 to 243644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,522 DEBUG Processing 779/1129 atomic regions from SNP 233507 to 234107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,768 DEBUG Processing 812/1013 atomic regions from SNP 243344 to 243944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,862 DEBUG Processing 780/1129 atomic regions from SNP 233807 to 234407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,096 DEBUG Processing 813/1013 atomic regions from SNP 243644 to 244244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,204 DEBUG Processing 781/1129 atomic regions from SNP 234107 to 234707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,420 DEBUG Processing 814/1013 atomic regions from SNP 243944 to 244544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,538 DEBUG Processing 782/1129 atomic regions from SNP 234407 to 235007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,740 DEBUG Processing 815/1013 atomic regions from SNP 244244 to 244844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,866 DEBUG Processing 783/1129 atomic regions from SNP 234707 to 235307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,053 DEBUG Processing 816/1013 atomic regions from SNP 244544 to 245144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,192 DEBUG Processing 784/1129 atomic regions from SNP 235007 to 235607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,369 DEBUG Processing 817/1013 atomic regions from SNP 244844 to 245444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,516 DEBUG Processing 785/1129 atomic regions from SNP 235307 to 235907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,684 DEBUG Processing 818/1013 atomic regions from SNP 245144 to 245744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,839 DEBUG Processing 786/1129 atomic regions from SNP 235607 to 236207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,992 DEBUG Processing 819/1013 atomic regions from SNP 245444 to 246044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,156 DEBUG Processing 787/1129 atomic regions from SNP 235907 to 236507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,332 DEBUG Processing 820/1013 atomic regions from SNP 245744 to 246344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,492 DEBUG Processing 788/1129 atomic regions from SNP 236207 to 236807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,662 DEBUG Processing 821/1013 atomic regions from SNP 246044 to 246644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,825 DEBUG Processing 789/1129 atomic regions from SNP 236507 to 237107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,984 DEBUG Processing 822/1013 atomic regions from SNP 246344 to 246944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,160 DEBUG Processing 790/1129 atomic regions from SNP 236807 to 237407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,311 DEBUG Processing 823/1013 atomic regions from SNP 246644 to 247244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,497 DEBUG Processing 791/1129 atomic regions from SNP 237107 to 237707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,634 DEBUG Processing 824/1013 atomic regions from SNP 246944 to 247544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,827 DEBUG Processing 792/1129 atomic regions from SNP 237407 to 238007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,974 DEBUG Processing 825/1013 atomic regions from SNP 247244 to 247844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,171 DEBUG Processing 793/1129 atomic regions from SNP 237707 to 238307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,292 DEBUG Processing 826/1013 atomic regions from SNP 247544 to 248144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,515 DEBUG Processing 794/1129 atomic regions from SNP 238007 to 238607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,619 DEBUG Processing 827/1013 atomic regions from SNP 247844 to 248444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,848 DEBUG Processing 795/1129 atomic regions from SNP 238307 to 238907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,946 DEBUG Processing 828/1013 atomic regions from SNP 248144 to 248744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,181 DEBUG Processing 796/1129 atomic regions from SNP 238607 to 239207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,268 DEBUG Processing 829/1013 atomic regions from SNP 248444 to 249044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,514 DEBUG Processing 797/1129 atomic regions from SNP 238907 to 239507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,588 DEBUG Processing 830/1013 atomic regions from SNP 248744 to 249344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,853 DEBUG Processing 798/1129 atomic regions from SNP 239207 to 239807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,909 DEBUG Processing 831/1013 atomic regions from SNP 249044 to 249644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,188 DEBUG Processing 799/1129 atomic regions from SNP 239507 to 240107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,221 DEBUG Processing 832/1013 atomic regions from SNP 249344 to 249944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,518 DEBUG Processing 800/1129 atomic regions from SNP 239807 to 240407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,536 DEBUG Processing 833/1013 atomic regions from SNP 249644 to 250244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,847 DEBUG Processing 801/1129 atomic regions from SNP 240107 to 240707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,854 DEBUG Processing 834/1013 atomic regions from SNP 249944 to 250544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,176 DEBUG Processing 835/1013 atomic regions from SNP 250244 to 250844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,182 DEBUG Processing 802/1129 atomic regions from SNP 240407 to 241007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,495 DEBUG Processing 836/1013 atomic regions from SNP 250544 to 251144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,511 DEBUG Processing 803/1129 atomic regions from SNP 240707 to 241307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,818 DEBUG Processing 837/1013 atomic regions from SNP 250844 to 251444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,844 DEBUG Processing 804/1129 atomic regions from SNP 241007 to 241607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,122 DEBUG Subchromosome time: 247.2018530589994, subchromosome SNPs: 193000 2025-01-31 09:48:01,123 DEBUG Estimated BADs: [1.26, 2.52, 0.84, 2.52, 0.63, 7.56, 7.56, 2.52, 0.63, 2.52, 0.50, 1.26, 2.52, 0.36, 1.26, 5.04, 0.42, 2.52, 7.56, 5.04, 12.59, 7.56, 2.52, 7.56] SNP counts: [8971, 13374, 27227, 3493, 8849, 3038, 8822, 2236, 6795, 17137, 28822, 8693, 5084, 5396, 24106, 7110, 5063, 3055, 6280, 21827, 8479, 10503, 7488, 16104] SNP IDs counts: [8971, 13374, 27227, 3493, 8849, 3038, 8822, 2236, 6795, 17137, 28822, 8693, 5084, 5396, 24106, 7110, 5063, 3055, 6280, 21827, 8479, 10503, 7488, 16104] Critical gap: 689622bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 8.64Mbp, 16.33Mbp, 32.79Mbp, 34.72Mbp, 40.13Mbp, 41.86Mbp[0.85Mbp], 47.49Mbp, 48.70Mbp, 52.80Mbp, 63.98Mbp, 81.73Mbp, 86.62Mbp, 89.56Mbp, 92.96Mbp, 106.56Mbp, 110.40Mbp, 113.96Mbp, 115.82Mbp, 119.20Mbp, 131.77Mbp, 136.22Mbp, 141.72Mbp, 147.85Mbp, 156.51Mbp] 2025-01-31 09:48:01,123 DEBUG chr4 time: 247.20242909609806 s 2025-01-31 09:48:01,139 DEBUG Processing 838/1013 atomic regions from SNP 251144 to 251744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,176 DEBUG Processing 805/1129 atomic regions from SNP 241307 to 241907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,351 DEBUG chr4: Fitting background model for 24 segments 2025-01-31 09:48:01,459 DEBUG Processing 839/1013 atomic regions from SNP 251444 to 252044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,504 DEBUG Processing 806/1129 atomic regions from SNP 241607 to 242207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,782 DEBUG Processing 840/1013 atomic regions from SNP 251744 to 252344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,828 DEBUG Processing 807/1129 atomic regions from SNP 241907 to 242507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,113 DEBUG Processing 841/1013 atomic regions from SNP 252044 to 252644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,171 DEBUG Processing 808/1129 atomic regions from SNP 242207 to 242807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,433 DEBUG Processing 842/1013 atomic regions from SNP 252344 to 252944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,502 DEBUG Processing 809/1129 atomic regions from SNP 242507 to 243107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,751 DEBUG Processing 843/1013 atomic regions from SNP 252644 to 253244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,831 DEBUG Processing 810/1129 atomic regions from SNP 242807 to 243407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,063 DEBUG Processing 844/1013 atomic regions from SNP 252944 to 253544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,154 DEBUG Processing 811/1129 atomic regions from SNP 243107 to 243707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,379 DEBUG Processing 845/1013 atomic regions from SNP 253244 to 253844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,482 DEBUG Processing 812/1129 atomic regions from SNP 243407 to 244007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,685 DEBUG Processing 846/1013 atomic regions from SNP 253544 to 254144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,802 DEBUG Processing 813/1129 atomic regions from SNP 243707 to 244307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,992 DEBUG Processing 847/1013 atomic regions from SNP 253844 to 254444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,116 DEBUG Processing 814/1129 atomic regions from SNP 244007 to 244607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,298 DEBUG Processing 848/1013 atomic regions from SNP 254144 to 254744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,435 DEBUG Processing 815/1129 atomic regions from SNP 244307 to 244907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,616 DEBUG Processing 849/1013 atomic regions from SNP 254444 to 255044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,785 DEBUG Processing 816/1129 atomic regions from SNP 244607 to 245207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,944 DEBUG Processing 850/1013 atomic regions from SNP 254744 to 255344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,126 DEBUG Processing 817/1129 atomic regions from SNP 244907 to 245507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,261 DEBUG Processing 851/1013 atomic regions from SNP 255044 to 255644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,461 DEBUG Processing 818/1129 atomic regions from SNP 245207 to 245807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,578 DEBUG Processing 852/1013 atomic regions from SNP 255344 to 255944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,813 DEBUG Processing 819/1129 atomic regions from SNP 245507 to 246107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,930 DEBUG Processing 853/1013 atomic regions from SNP 255644 to 256244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,178 DEBUG Processing 820/1129 atomic regions from SNP 245807 to 246407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,268 DEBUG Processing 854/1013 atomic regions from SNP 255944 to 256544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,526 DEBUG Processing 821/1129 atomic regions from SNP 246107 to 246707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,595 DEBUG Processing 855/1013 atomic regions from SNP 256244 to 256844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,866 DEBUG Processing 822/1129 atomic regions from SNP 246407 to 247007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,918 DEBUG Processing 856/1013 atomic regions from SNP 256544 to 257144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,191 DEBUG Processing 823/1129 atomic regions from SNP 246707 to 247307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,229 DEBUG Processing 857/1013 atomic regions from SNP 256844 to 257444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,514 DEBUG Processing 824/1129 atomic regions from SNP 247007 to 247607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,536 DEBUG Processing 858/1013 atomic regions from SNP 257144 to 257744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,871 DEBUG Processing 825/1129 atomic regions from SNP 247307 to 247907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,875 DEBUG Processing 859/1013 atomic regions from SNP 257444 to 258044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,204 DEBUG Processing 860/1013 atomic regions from SNP 257744 to 258344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,215 DEBUG Processing 826/1129 atomic regions from SNP 247607 to 248207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,524 DEBUG Processing 861/1013 atomic regions from SNP 258044 to 258644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,545 DEBUG Processing 827/1129 atomic regions from SNP 247907 to 248507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,872 DEBUG Processing 862/1013 atomic regions from SNP 258344 to 258944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,905 DEBUG Processing 828/1129 atomic regions from SNP 248207 to 248807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,219 DEBUG Processing 863/1013 atomic regions from SNP 258644 to 259244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,258 DEBUG Processing 829/1129 atomic regions from SNP 248507 to 249107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,559 DEBUG Processing 864/1013 atomic regions from SNP 258944 to 259544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,611 DEBUG Processing 830/1129 atomic regions from SNP 248807 to 249407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,908 DEBUG Processing 865/1013 atomic regions from SNP 259244 to 259844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,968 DEBUG Processing 831/1129 atomic regions from SNP 249107 to 249707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,272 DEBUG Processing 866/1013 atomic regions from SNP 259544 to 260144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,318 DEBUG Processing 832/1129 atomic regions from SNP 249407 to 250007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,622 DEBUG Processing 867/1013 atomic regions from SNP 259844 to 260444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,670 DEBUG Processing 833/1129 atomic regions from SNP 249707 to 250307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,963 DEBUG Processing 868/1013 atomic regions from SNP 260144 to 260744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,021 DEBUG Processing 834/1129 atomic regions from SNP 250007 to 250607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,306 DEBUG Processing 869/1013 atomic regions from SNP 260444 to 261044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,372 DEBUG Processing 835/1129 atomic regions from SNP 250307 to 250907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,642 DEBUG Processing 870/1013 atomic regions from SNP 260744 to 261344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,723 DEBUG Processing 836/1129 atomic regions from SNP 250607 to 251207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,976 DEBUG Processing 871/1013 atomic regions from SNP 261044 to 261644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,064 DEBUG Processing 837/1129 atomic regions from SNP 250907 to 251507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,316 DEBUG Processing 872/1013 atomic regions from SNP 261344 to 261944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,416 DEBUG Processing 838/1129 atomic regions from SNP 251207 to 251807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,676 DEBUG Processing 873/1013 atomic regions from SNP 261644 to 262244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,758 DEBUG Processing 839/1129 atomic regions from SNP 251507 to 252107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,043 DEBUG Processing 874/1013 atomic regions from SNP 261944 to 262544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,106 DEBUG Processing 840/1129 atomic regions from SNP 251807 to 252407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,388 DEBUG Processing 875/1013 atomic regions from SNP 262244 to 262844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,455 DEBUG Processing 841/1129 atomic regions from SNP 252107 to 252707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,759 DEBUG Processing 876/1013 atomic regions from SNP 262544 to 263144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,803 DEBUG Processing 842/1129 atomic regions from SNP 252407 to 253007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,115 DEBUG Processing 877/1013 atomic regions from SNP 262844 to 263444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,147 DEBUG Processing 843/1129 atomic regions from SNP 252707 to 253307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,455 DEBUG Processing 878/1013 atomic regions from SNP 263144 to 263744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,494 DEBUG Processing 844/1129 atomic regions from SNP 253007 to 253607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,815 DEBUG Processing 879/1013 atomic regions from SNP 263444 to 264044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,843 DEBUG Processing 845/1129 atomic regions from SNP 253307 to 253907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,174 DEBUG Processing 880/1013 atomic regions from SNP 263744 to 264344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,191 DEBUG Processing 846/1129 atomic regions from SNP 253607 to 254207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,539 DEBUG Processing 847/1129 atomic regions from SNP 253907 to 254507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,541 DEBUG Processing 881/1013 atomic regions from SNP 264044 to 264644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,882 DEBUG Processing 848/1129 atomic regions from SNP 254207 to 254807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,897 DEBUG Processing 882/1013 atomic regions from SNP 264344 to 264944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,223 DEBUG Processing 849/1129 atomic regions from SNP 254507 to 255107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,231 DEBUG Processing 883/1013 atomic regions from SNP 264644 to 265244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,558 DEBUG Processing 884/1013 atomic regions from SNP 264944 to 265544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,566 DEBUG Processing 850/1129 atomic regions from SNP 254807 to 255407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,879 DEBUG Processing 885/1013 atomic regions from SNP 265244 to 265844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,900 DEBUG Processing 851/1129 atomic regions from SNP 255107 to 255707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,217 DEBUG Processing 886/1013 atomic regions from SNP 265544 to 266144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,233 DEBUG Processing 852/1129 atomic regions from SNP 255407 to 256007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,573 DEBUG Processing 853/1129 atomic regions from SNP 255707 to 256307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,577 DEBUG Processing 887/1013 atomic regions from SNP 265844 to 266444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,915 DEBUG Processing 854/1129 atomic regions from SNP 256007 to 256607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,935 DEBUG Processing 888/1013 atomic regions from SNP 266144 to 266744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,244 DEBUG Processing 855/1129 atomic regions from SNP 256307 to 256907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,269 DEBUG Processing 889/1013 atomic regions from SNP 266444 to 267044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,579 DEBUG Processing 856/1129 atomic regions from SNP 256607 to 257207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,595 DEBUG Processing 890/1013 atomic regions from SNP 266744 to 267344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,925 DEBUG Processing 891/1013 atomic regions from SNP 267044 to 267644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,932 DEBUG Processing 857/1129 atomic regions from SNP 256907 to 257507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,240 DEBUG Processing 892/1013 atomic regions from SNP 267344 to 267944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,247 DEBUG Processing 858/1129 atomic regions from SNP 257207 to 257807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,556 DEBUG Processing 893/1013 atomic regions from SNP 267644 to 268244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,563 DEBUG Processing 859/1129 atomic regions from SNP 257507 to 258107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,894 DEBUG Processing 860/1129 atomic regions from SNP 257807 to 258407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,894 DEBUG Processing 894/1013 atomic regions from SNP 267944 to 268544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,107 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:48:20,154 DEBUG chr6: Signal quantile: 0.991. signal threshold: 14. Best RMSEA: 0.020 2025-01-31 09:48:20,267 DEBUG Processing 895/1013 atomic regions from SNP 268244 to 268844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,282 DEBUG Processing 861/1129 atomic regions from SNP 258107 to 258707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,633 DEBUG Processing 896/1013 atomic regions from SNP 268544 to 269144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,669 DEBUG Processing 862/1129 atomic regions from SNP 258407 to 259007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,992 DEBUG Processing 897/1013 atomic regions from SNP 268844 to 269444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,032 DEBUG Processing 863/1129 atomic regions from SNP 258707 to 259307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,334 DEBUG Processing 898/1013 atomic regions from SNP 269144 to 269744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,367 DEBUG Processing 864/1129 atomic regions from SNP 259007 to 259607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,673 DEBUG Processing 899/1013 atomic regions from SNP 269444 to 270044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,700 DEBUG Processing 865/1129 atomic regions from SNP 259307 to 259907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,007 DEBUG Processing 900/1013 atomic regions from SNP 269744 to 270344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,030 DEBUG Processing 866/1129 atomic regions from SNP 259607 to 260207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,358 DEBUG Processing 901/1013 atomic regions from SNP 270044 to 270644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,363 DEBUG Processing 867/1129 atomic regions from SNP 259907 to 260507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,692 DEBUG Processing 868/1129 atomic regions from SNP 260207 to 260807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,699 DEBUG Processing 902/1013 atomic regions from SNP 270344 to 270944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,013 DEBUG Processing 869/1129 atomic regions from SNP 260507 to 261107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,018 DEBUG Processing 903/1013 atomic regions from SNP 270644 to 271244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,362 DEBUG Processing 870/1129 atomic regions from SNP 260807 to 261407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,367 DEBUG Processing 904/1013 atomic regions from SNP 270944 to 271544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,699 DEBUG Processing 871/1129 atomic regions from SNP 261107 to 261707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,714 DEBUG Processing 905/1013 atomic regions from SNP 271244 to 271844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,043 DEBUG Processing 872/1129 atomic regions from SNP 261407 to 262007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,059 DEBUG Processing 906/1013 atomic regions from SNP 271544 to 272144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,378 DEBUG Processing 873/1129 atomic regions from SNP 261707 to 262307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,379 DEBUG Processing 907/1013 atomic regions from SNP 271844 to 272444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,727 DEBUG Processing 908/1013 atomic regions from SNP 272144 to 272744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,742 DEBUG Processing 874/1129 atomic regions from SNP 262007 to 262607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,068 DEBUG Processing 909/1013 atomic regions from SNP 272444 to 273044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,094 DEBUG Processing 875/1129 atomic regions from SNP 262307 to 262907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,302 DEBUG chr6 total SNP count: 254503 2025-01-31 09:48:25,302 DEBUG chr6 length: 149736546 2025-01-31 09:48:25,302 DEBUG ----------------------------------------- 2025-01-31 09:48:25,302 INFO Processing SNPs in chr6 2025-01-31 09:48:25,430 DEBUG Processing 910/1013 atomic regions from SNP 272744 to 273344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,453 DEBUG Processing 876/1129 atomic regions from SNP 262607 to 263207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,551 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 254503)] 2025-01-31 09:48:25,718 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:25,779 DEBUG Processing 911/1013 atomic regions from SNP 273044 to 273644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,803 DEBUG Processing 877/1129 atomic regions from SNP 262907 to 263507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,121 DEBUG Processing 912/1013 atomic regions from SNP 273344 to 273944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,164 DEBUG Processing 878/1129 atomic regions from SNP 263207 to 263807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,475 DEBUG Processing 913/1013 atomic regions from SNP 273644 to 274244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,521 DEBUG Processing 879/1129 atomic regions from SNP 263507 to 264107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,826 DEBUG Processing 914/1013 atomic regions from SNP 273944 to 274544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,870 DEBUG Processing 880/1129 atomic regions from SNP 263807 to 264407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,168 DEBUG Processing 915/1013 atomic regions from SNP 274244 to 274844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,228 DEBUG Processing 881/1129 atomic regions from SNP 264107 to 264707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,512 DEBUG Processing 916/1013 atomic regions from SNP 274544 to 275144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,581 DEBUG Processing 882/1129 atomic regions from SNP 264407 to 265007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,852 DEBUG Processing 917/1013 atomic regions from SNP 274844 to 275444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,934 DEBUG Processing 883/1129 atomic regions from SNP 264707 to 265307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,193 DEBUG Processing 918/1013 atomic regions from SNP 275144 to 275744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,286 DEBUG Processing 884/1129 atomic regions from SNP 265007 to 265607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,537 DEBUG Processing 919/1013 atomic regions from SNP 275444 to 276044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,672 DEBUG Processing 885/1129 atomic regions from SNP 265307 to 265907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,880 DEBUG Processing 920/1013 atomic regions from SNP 275744 to 276344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,069 DEBUG Processing 886/1129 atomic regions from SNP 265607 to 266207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,221 DEBUG Processing 921/1013 atomic regions from SNP 276044 to 276644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,443 DEBUG Processing 887/1129 atomic regions from SNP 265907 to 266507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,551 DEBUG Processing 922/1013 atomic regions from SNP 276344 to 276944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,813 DEBUG Processing 888/1129 atomic regions from SNP 266207 to 266807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,889 DEBUG Processing 923/1013 atomic regions from SNP 276644 to 277244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,185 DEBUG Processing 889/1129 atomic regions from SNP 266507 to 267107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,227 DEBUG Processing 924/1013 atomic regions from SNP 276944 to 277544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,566 DEBUG Processing 890/1129 atomic regions from SNP 266807 to 267407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,572 DEBUG Processing 925/1013 atomic regions from SNP 277244 to 277844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,918 DEBUG Processing 926/1013 atomic regions from SNP 277544 to 278144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,944 DEBUG Processing 891/1129 atomic regions from SNP 267107 to 267707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,257 DEBUG Processing 927/1013 atomic regions from SNP 277844 to 278444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,326 DEBUG Processing 892/1129 atomic regions from SNP 267407 to 268007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,594 DEBUG Processing 928/1013 atomic regions from SNP 278144 to 278744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,694 DEBUG Processing 893/1129 atomic regions from SNP 267707 to 268307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,928 DEBUG Processing 929/1013 atomic regions from SNP 278444 to 279044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,054 DEBUG Processing 894/1129 atomic regions from SNP 268007 to 268607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,260 DEBUG Processing 930/1013 atomic regions from SNP 278744 to 279344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,433 DEBUG Processing 895/1129 atomic regions from SNP 268307 to 268907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,596 DEBUG Processing 931/1013 atomic regions from SNP 279044 to 279644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,808 DEBUG Processing 896/1129 atomic regions from SNP 268607 to 269207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,930 DEBUG Processing 932/1013 atomic regions from SNP 279344 to 279944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,183 DEBUG Processing 897/1129 atomic regions from SNP 268907 to 269507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,263 DEBUG Processing 933/1013 atomic regions from SNP 279644 to 280244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,553 DEBUG Processing 898/1129 atomic regions from SNP 269207 to 269807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,597 DEBUG Processing 934/1013 atomic regions from SNP 279944 to 280544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,899 DEBUG Processing 899/1129 atomic regions from SNP 269507 to 270107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,929 DEBUG Processing 935/1013 atomic regions from SNP 280244 to 280844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,266 DEBUG Processing 936/1013 atomic regions from SNP 280544 to 281144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,272 DEBUG Processing 900/1129 atomic regions from SNP 269807 to 270407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,604 DEBUG Processing 937/1013 atomic regions from SNP 280844 to 281444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,623 DEBUG Processing 901/1129 atomic regions from SNP 270107 to 270707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,938 DEBUG Processing 938/1013 atomic regions from SNP 281144 to 281744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,969 DEBUG Processing 902/1129 atomic regions from SNP 270407 to 271007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,276 DEBUG Processing 939/1013 atomic regions from SNP 281444 to 282044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,316 DEBUG Processing 903/1129 atomic regions from SNP 270707 to 271307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,618 DEBUG Processing 940/1013 atomic regions from SNP 281744 to 282344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,660 DEBUG Processing 904/1129 atomic regions from SNP 271007 to 271607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,960 DEBUG Processing 941/1013 atomic regions from SNP 282044 to 282644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,004 DEBUG Processing 905/1129 atomic regions from SNP 271307 to 271907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,321 DEBUG Processing 942/1013 atomic regions from SNP 282344 to 282944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,351 DEBUG Processing 906/1129 atomic regions from SNP 271607 to 272207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,672 DEBUG Processing 943/1013 atomic regions from SNP 282644 to 283244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,695 DEBUG Processing 907/1129 atomic regions from SNP 271907 to 272507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,032 DEBUG Processing 944/1013 atomic regions from SNP 282944 to 283544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,043 DEBUG Processing 908/1129 atomic regions from SNP 272207 to 272807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,369 DEBUG Processing 945/1013 atomic regions from SNP 283244 to 283844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,391 DEBUG Processing 909/1129 atomic regions from SNP 272507 to 273107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,702 DEBUG Processing 946/1013 atomic regions from SNP 283544 to 284144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,735 DEBUG Processing 910/1129 atomic regions from SNP 272807 to 273407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,035 DEBUG Processing 947/1013 atomic regions from SNP 283844 to 284444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,079 DEBUG Processing 911/1129 atomic regions from SNP 273107 to 273707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,373 DEBUG Processing 948/1013 atomic regions from SNP 284144 to 284744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,429 DEBUG Processing 912/1129 atomic regions from SNP 273407 to 274007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,724 DEBUG Processing 949/1013 atomic regions from SNP 284444 to 285044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,777 DEBUG Processing 913/1129 atomic regions from SNP 273707 to 274307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,084 DEBUG Processing 950/1013 atomic regions from SNP 284744 to 285344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,126 DEBUG Processing 914/1129 atomic regions from SNP 274007 to 274607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,462 DEBUG Processing 951/1013 atomic regions from SNP 285044 to 285644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,478 DEBUG Processing 915/1129 atomic regions from SNP 274307 to 274907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,824 DEBUG Processing 952/1013 atomic regions from SNP 285344 to 285944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,831 DEBUG Processing 916/1129 atomic regions from SNP 274607 to 275207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,168 DEBUG Processing 953/1013 atomic regions from SNP 285644 to 286244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,190 DEBUG Processing 917/1129 atomic regions from SNP 274907 to 275507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,515 DEBUG Processing 954/1013 atomic regions from SNP 285944 to 286544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,559 DEBUG Processing 918/1129 atomic regions from SNP 275207 to 275807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,857 DEBUG Processing 955/1013 atomic regions from SNP 286244 to 286844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,908 DEBUG Processing 919/1129 atomic regions from SNP 275507 to 276107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,198 DEBUG Processing 956/1013 atomic regions from SNP 286544 to 287144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,265 DEBUG Processing 920/1129 atomic regions from SNP 275807 to 276407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,556 DEBUG Processing 957/1013 atomic regions from SNP 286844 to 287444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,650 DEBUG Processing 921/1129 atomic regions from SNP 276107 to 276707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,927 DEBUG Processing 958/1013 atomic regions from SNP 287144 to 287744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,034 DEBUG Processing 922/1129 atomic regions from SNP 276407 to 277007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,282 DEBUG Processing 959/1013 atomic regions from SNP 287444 to 288044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,420 DEBUG Processing 923/1129 atomic regions from SNP 276707 to 277307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,618 DEBUG Processing 960/1013 atomic regions from SNP 287744 to 288344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,798 DEBUG Processing 924/1129 atomic regions from SNP 277007 to 277607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,953 DEBUG Processing 961/1013 atomic regions from SNP 288044 to 288644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,143 DEBUG Processing 925/1129 atomic regions from SNP 277307 to 277907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,296 DEBUG Processing 962/1013 atomic regions from SNP 288344 to 288944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,496 DEBUG Processing 926/1129 atomic regions from SNP 277607 to 278207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,650 DEBUG Processing 963/1013 atomic regions from SNP 288644 to 289244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,856 DEBUG Processing 927/1129 atomic regions from SNP 277907 to 278507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,009 DEBUG Processing 964/1013 atomic regions from SNP 288944 to 289544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,220 DEBUG Processing 928/1129 atomic regions from SNP 278207 to 278807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,379 DEBUG Processing 965/1013 atomic regions from SNP 289244 to 289844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,575 DEBUG Processing 929/1129 atomic regions from SNP 278507 to 279107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,742 DEBUG Processing 966/1013 atomic regions from SNP 289544 to 290144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,921 DEBUG Processing 930/1129 atomic regions from SNP 278807 to 279407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,105 DEBUG Processing 967/1013 atomic regions from SNP 289844 to 290444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,268 DEBUG Processing 931/1129 atomic regions from SNP 279107 to 279707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,481 DEBUG Processing 968/1013 atomic regions from SNP 290144 to 290744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,642 DEBUG Processing 932/1129 atomic regions from SNP 279407 to 280007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,856 DEBUG Processing 969/1013 atomic regions from SNP 290444 to 291044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,996 DEBUG Processing 933/1129 atomic regions from SNP 279707 to 280307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,227 DEBUG Processing 970/1013 atomic regions from SNP 290744 to 291344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,347 DEBUG Processing 934/1129 atomic regions from SNP 280007 to 280607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,597 DEBUG Processing 971/1013 atomic regions from SNP 291044 to 291644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,695 DEBUG Processing 935/1129 atomic regions from SNP 280307 to 280907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,968 DEBUG Processing 972/1013 atomic regions from SNP 291344 to 291944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,044 DEBUG Processing 936/1129 atomic regions from SNP 280607 to 281207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,314 DEBUG Processing 973/1013 atomic regions from SNP 291644 to 292244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,394 DEBUG Processing 937/1129 atomic regions from SNP 280907 to 281507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,652 DEBUG Processing 974/1013 atomic regions from SNP 291944 to 292544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,743 DEBUG Processing 938/1129 atomic regions from SNP 281207 to 281807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,989 DEBUG Processing 975/1013 atomic regions from SNP 292244 to 292844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,092 DEBUG Processing 939/1129 atomic regions from SNP 281507 to 282107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,327 DEBUG Processing 976/1013 atomic regions from SNP 292544 to 293144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,440 DEBUG Processing 940/1129 atomic regions from SNP 281807 to 282407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,663 DEBUG Processing 977/1013 atomic regions from SNP 292844 to 293444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,788 DEBUG Processing 941/1129 atomic regions from SNP 282107 to 282707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,997 DEBUG Processing 978/1013 atomic regions from SNP 293144 to 293744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,152 DEBUG Processing 942/1129 atomic regions from SNP 282407 to 283007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,330 DEBUG Processing 979/1013 atomic regions from SNP 293444 to 294044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,506 DEBUG Processing 943/1129 atomic regions from SNP 282707 to 283307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,666 DEBUG Processing 980/1013 atomic regions from SNP 293744 to 294344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,854 DEBUG Processing 944/1129 atomic regions from SNP 283007 to 283607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,001 DEBUG Processing 981/1013 atomic regions from SNP 294044 to 294644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,201 DEBUG Processing 945/1129 atomic regions from SNP 283307 to 283907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,332 DEBUG Processing 982/1013 atomic regions from SNP 294344 to 294944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,536 DEBUG Processing 946/1129 atomic regions from SNP 283607 to 284207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,666 DEBUG Processing 983/1013 atomic regions from SNP 294644 to 295244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,898 DEBUG Processing 947/1129 atomic regions from SNP 283907 to 284507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,016 DEBUG Processing 984/1013 atomic regions from SNP 294944 to 295544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,281 DEBUG Processing 948/1129 atomic regions from SNP 284207 to 284807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,385 DEBUG Processing 985/1013 atomic regions from SNP 295244 to 295844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,663 DEBUG Processing 949/1129 atomic regions from SNP 284507 to 285107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,725 DEBUG Processing 986/1013 atomic regions from SNP 295544 to 296144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,049 DEBUG Processing 950/1129 atomic regions from SNP 284807 to 285407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,064 DEBUG Processing 987/1013 atomic regions from SNP 295844 to 296444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,409 DEBUG Processing 988/1013 atomic regions from SNP 296144 to 296744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,442 DEBUG Processing 951/1129 atomic regions from SNP 285107 to 285707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,741 DEBUG Processing 989/1013 atomic regions from SNP 296444 to 297044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,820 DEBUG Processing 952/1129 atomic regions from SNP 285407 to 286007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,074 DEBUG Processing 990/1013 atomic regions from SNP 296744 to 297344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,188 DEBUG Processing 953/1129 atomic regions from SNP 285707 to 286307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,409 DEBUG Processing 991/1013 atomic regions from SNP 297044 to 297644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,534 DEBUG Processing 954/1129 atomic regions from SNP 286007 to 286607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,738 DEBUG Processing 992/1013 atomic regions from SNP 297344 to 297944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,876 DEBUG Processing 955/1129 atomic regions from SNP 286307 to 286907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,067 DEBUG Processing 993/1013 atomic regions from SNP 297644 to 298244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,216 DEBUG Processing 956/1129 atomic regions from SNP 286607 to 287207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,400 DEBUG Processing 994/1013 atomic regions from SNP 297944 to 298544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,562 DEBUG Processing 957/1129 atomic regions from SNP 286907 to 287507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,738 DEBUG Processing 995/1013 atomic regions from SNP 298244 to 298844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,909 DEBUG Processing 958/1129 atomic regions from SNP 287207 to 287807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,078 DEBUG Processing 996/1013 atomic regions from SNP 298544 to 299144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,271 DEBUG Processing 959/1129 atomic regions from SNP 287507 to 288107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,415 DEBUG Processing 997/1013 atomic regions from SNP 298844 to 299444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,650 DEBUG Processing 960/1129 atomic regions from SNP 287807 to 288407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,775 DEBUG Processing 998/1013 atomic regions from SNP 299144 to 299744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,028 DEBUG Processing 961/1129 atomic regions from SNP 288107 to 288707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,119 DEBUG Processing 999/1013 atomic regions from SNP 299444 to 300044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,372 DEBUG Processing 962/1129 atomic regions from SNP 288407 to 289007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,451 DEBUG Processing 1000/1013 atomic regions from SNP 299744 to 300344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,700 DEBUG Segmenting atomic regions: 2025-01-31 09:48:56,718 DEBUG Processing 963/1129 atomic regions from SNP 288707 to 289307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,788 DEBUG Processing 1001/1013 atomic regions from SNP 300044 to 300644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,809 DEBUG Processing 1/847 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,070 DEBUG Processing 964/1129 atomic regions from SNP 289007 to 289607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,119 DEBUG Processing 2/847 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,153 DEBUG Processing 1002/1013 atomic regions from SNP 300344 to 300944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,415 DEBUG Processing 965/1129 atomic regions from SNP 289307 to 289907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,437 DEBUG Processing 3/847 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,515 DEBUG Processing 1003/1013 atomic regions from SNP 300644 to 301244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,749 DEBUG Processing 4/847 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,784 DEBUG Processing 966/1129 atomic regions from SNP 289607 to 290207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,842 DEBUG Processing 1004/1013 atomic regions from SNP 300944 to 301544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,058 DEBUG Processing 5/847 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,150 DEBUG Processing 967/1129 atomic regions from SNP 289907 to 290507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,166 DEBUG Processing 1005/1013 atomic regions from SNP 301244 to 301844 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,357 DEBUG Processing 6/847 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,485 DEBUG Processing 968/1129 atomic regions from SNP 290207 to 290807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,488 DEBUG Processing 1006/1013 atomic regions from SNP 301544 to 302144 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,652 DEBUG Processing 7/847 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,811 DEBUG Processing 1007/1013 atomic regions from SNP 301844 to 302444 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,818 DEBUG Processing 969/1129 atomic regions from SNP 290507 to 291107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,946 DEBUG Processing 8/847 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,133 DEBUG Processing 1008/1013 atomic regions from SNP 302144 to 302744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,150 DEBUG Processing 970/1129 atomic regions from SNP 290807 to 291407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,262 DEBUG Processing 9/847 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,474 DEBUG Processing 1009/1013 atomic regions from SNP 302444 to 303044 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,499 DEBUG Processing 971/1129 atomic regions from SNP 291107 to 291707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,574 DEBUG Processing 10/847 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,827 DEBUG Processing 1010/1013 atomic regions from SNP 302744 to 303344 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,850 DEBUG Processing 972/1129 atomic regions from SNP 291407 to 292007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,888 DEBUG Processing 11/847 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,200 DEBUG Processing 1011/1013 atomic regions from SNP 303044 to 303644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,203 DEBUG Processing 973/1129 atomic regions from SNP 291707 to 292307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,206 DEBUG Processing 12/847 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,538 DEBUG Processing 13/847 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,558 DEBUG Processing 974/1129 atomic regions from SNP 292007 to 292607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,559 DEBUG Processing 1012/1013 atomic regions from SNP 303344 to 303944 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,867 DEBUG Processing 14/847 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,902 DEBUG Processing 1013/1013 atomic regions from SNP 303644 to 304244 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,912 DEBUG Processing 975/1129 atomic regions from SNP 292307 to 292907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,112 DEBUG Unique SNPs positions in subchromosome 1: 304245 2025-01-31 09:49:01,185 DEBUG Processing 15/847 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,259 DEBUG Processing 976/1129 atomic regions from SNP 292607 to 293207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,485 DEBUG Processing 16/847 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,599 DEBUG Processing 977/1129 atomic regions from SNP 292907 to 293507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,777 DEBUG Processing 17/847 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,950 DEBUG Processing 978/1129 atomic regions from SNP 293207 to 293807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,065 DEBUG Processing 18/847 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,170 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:49:02,280 DEBUG Processing 979/1129 atomic regions from SNP 293507 to 294107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,380 DEBUG Processing 19/847 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,618 DEBUG Processing 980/1129 atomic regions from SNP 293807 to 294407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,679 DEBUG Processing 20/847 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,951 DEBUG Processing 981/1129 atomic regions from SNP 294107 to 294707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,972 DEBUG Processing 21/847 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,269 DEBUG Processing 22/847 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,304 DEBUG Processing 982/1129 atomic regions from SNP 294407 to 295007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,562 DEBUG Processing 23/847 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,661 DEBUG Processing 983/1129 atomic regions from SNP 294707 to 295307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,853 DEBUG Processing 24/847 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,029 DEBUG Processing 984/1129 atomic regions from SNP 295007 to 295607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,146 DEBUG Processing 25/847 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,393 DEBUG Processing 985/1129 atomic regions from SNP 295307 to 295907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,443 DEBUG Processing 26/847 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,739 DEBUG Processing 27/847 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,745 DEBUG Processing 986/1129 atomic regions from SNP 295607 to 296207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,033 DEBUG Processing 28/847 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,071 DEBUG Processing 987/1129 atomic regions from SNP 295907 to 296507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,323 DEBUG Processing 29/847 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,401 DEBUG Processing 988/1129 atomic regions from SNP 296207 to 296807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,613 DEBUG Processing 30/847 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,749 DEBUG Processing 989/1129 atomic regions from SNP 296507 to 297107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,935 DEBUG Processing 31/847 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,118 DEBUG Processing 990/1129 atomic regions from SNP 296807 to 297407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,261 DEBUG Processing 32/847 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,489 DEBUG Processing 991/1129 atomic regions from SNP 297107 to 297707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,558 DEBUG Processing 33/847 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,834 DEBUG Processing 992/1129 atomic regions from SNP 297407 to 298007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,854 DEBUG Processing 34/847 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,160 DEBUG Processing 35/847 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,174 DEBUG Processing 993/1129 atomic regions from SNP 297707 to 298307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,461 DEBUG Processing 36/847 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,510 DEBUG Processing 994/1129 atomic regions from SNP 298007 to 298607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,762 DEBUG Processing 37/847 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,846 DEBUG Processing 995/1129 atomic regions from SNP 298307 to 298907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,067 DEBUG Processing 38/847 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,181 DEBUG Processing 996/1129 atomic regions from SNP 298607 to 299207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,373 DEBUG Processing 39/847 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,514 DEBUG Processing 997/1129 atomic regions from SNP 298907 to 299507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,675 DEBUG Processing 40/847 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,846 DEBUG Processing 998/1129 atomic regions from SNP 299207 to 299807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,971 DEBUG Processing 41/847 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,182 DEBUG Processing 999/1129 atomic regions from SNP 299507 to 300107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,264 DEBUG Processing 42/847 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,522 DEBUG Processing 1000/1129 atomic regions from SNP 299807 to 300407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,564 DEBUG Processing 43/847 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,859 DEBUG Processing 1001/1129 atomic regions from SNP 300107 to 300707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,862 DEBUG Processing 44/847 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,166 DEBUG Processing 45/847 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,199 DEBUG Processing 1002/1129 atomic regions from SNP 300407 to 301007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,464 DEBUG Processing 46/847 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,535 DEBUG Processing 1003/1129 atomic regions from SNP 300707 to 301307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,767 DEBUG Processing 47/847 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,869 DEBUG Processing 1004/1129 atomic regions from SNP 301007 to 301607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,070 DEBUG Processing 48/847 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,202 DEBUG Processing 1005/1129 atomic regions from SNP 301307 to 301907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,375 DEBUG Processing 49/847 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,535 DEBUG Processing 1006/1129 atomic regions from SNP 301607 to 302207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,674 DEBUG Processing 50/847 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,872 DEBUG Processing 1007/1129 atomic regions from SNP 301907 to 302507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,971 DEBUG Processing 51/847 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,213 DEBUG Processing 1008/1129 atomic regions from SNP 302207 to 302807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,267 DEBUG Processing 52/847 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,550 DEBUG Processing 1009/1129 atomic regions from SNP 302507 to 303107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,564 DEBUG Processing 53/847 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,866 DEBUG Processing 54/847 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,889 DEBUG Processing 1010/1129 atomic regions from SNP 302807 to 303407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,165 DEBUG Processing 55/847 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,224 DEBUG Processing 1011/1129 atomic regions from SNP 303107 to 303707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,466 DEBUG Processing 56/847 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,558 DEBUG Processing 1012/1129 atomic regions from SNP 303407 to 304007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,769 DEBUG Processing 57/847 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,893 DEBUG Processing 1013/1129 atomic regions from SNP 303707 to 304307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,073 DEBUG Processing 58/847 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,227 DEBUG Processing 1014/1129 atomic regions from SNP 304007 to 304607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,376 DEBUG Processing 59/847 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,559 DEBUG Processing 1015/1129 atomic regions from SNP 304307 to 304907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,668 DEBUG Processing 60/847 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,893 DEBUG Processing 1016/1129 atomic regions from SNP 304607 to 305207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,964 DEBUG Processing 61/847 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,240 DEBUG Processing 1017/1129 atomic regions from SNP 304907 to 305507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,260 DEBUG Processing 62/847 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,560 DEBUG Processing 63/847 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,598 DEBUG Processing 1018/1129 atomic regions from SNP 305207 to 305807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,859 DEBUG Processing 64/847 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,933 DEBUG Processing 1019/1129 atomic regions from SNP 305507 to 306107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,163 DEBUG Processing 65/847 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,268 DEBUG Processing 1020/1129 atomic regions from SNP 305807 to 306407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,465 DEBUG Processing 66/847 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,600 DEBUG Processing 1021/1129 atomic regions from SNP 306107 to 306707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,770 DEBUG Processing 67/847 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,931 DEBUG Processing 1022/1129 atomic regions from SNP 306407 to 307007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,061 DEBUG Processing 68/847 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,265 DEBUG Processing 1023/1129 atomic regions from SNP 306707 to 307307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,361 DEBUG Processing 69/847 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,598 DEBUG Processing 1024/1129 atomic regions from SNP 307007 to 307607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,652 DEBUG Processing 70/847 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,942 DEBUG Processing 71/847 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,945 DEBUG Processing 1025/1129 atomic regions from SNP 307307 to 307907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,239 DEBUG Processing 72/847 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,310 DEBUG Processing 1026/1129 atomic regions from SNP 307607 to 308207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,535 DEBUG Processing 73/847 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,660 DEBUG Processing 1027/1129 atomic regions from SNP 307907 to 308507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,829 DEBUG Processing 74/847 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,985 DEBUG Processing 1028/1129 atomic regions from SNP 308207 to 308807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,124 DEBUG Processing 75/847 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,312 DEBUG Processing 1029/1129 atomic regions from SNP 308507 to 309107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,418 DEBUG Processing 76/847 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,642 DEBUG Processing 1030/1129 atomic regions from SNP 308807 to 309407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,715 DEBUG Processing 77/847 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,975 DEBUG Processing 1031/1129 atomic regions from SNP 309107 to 309707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,008 DEBUG Processing 78/847 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,301 DEBUG Processing 79/847 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,311 DEBUG Processing 1032/1129 atomic regions from SNP 309407 to 310007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,597 DEBUG Processing 80/847 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,660 DEBUG Processing 1033/1129 atomic regions from SNP 309707 to 310307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,897 DEBUG Processing 81/847 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,027 DEBUG Processing 1034/1129 atomic regions from SNP 310007 to 310607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,200 DEBUG Processing 82/847 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,387 DEBUG Processing 1035/1129 atomic regions from SNP 310307 to 310907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,518 DEBUG Processing 83/847 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,730 DEBUG Processing 1036/1129 atomic regions from SNP 310607 to 311207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,812 DEBUG Processing 84/847 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,074 DEBUG Processing 1037/1129 atomic regions from SNP 310907 to 311507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,106 DEBUG Processing 85/847 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,399 DEBUG Processing 86/847 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,440 DEBUG Processing 1038/1129 atomic regions from SNP 311207 to 311807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,693 DEBUG Processing 87/847 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,806 DEBUG Processing 1039/1129 atomic regions from SNP 311507 to 312107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,987 DEBUG Processing 88/847 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,164 DEBUG Processing 1040/1129 atomic regions from SNP 311807 to 312407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,309 DEBUG Processing 89/847 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,540 DEBUG Processing 1041/1129 atomic regions from SNP 312107 to 312707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,620 DEBUG Processing 90/847 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,922 DEBUG Processing 1042/1129 atomic regions from SNP 312407 to 313007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,935 DEBUG Processing 91/847 atomic regions from SNP 27090 to 27691 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,255 DEBUG Processing 92/847 atomic regions from SNP 27391 to 27992 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,311 DEBUG Processing 1043/1129 atomic regions from SNP 312707 to 313307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,566 DEBUG Processing 93/847 atomic regions from SNP 27692 to 28293 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,686 DEBUG Processing 1044/1129 atomic regions from SNP 313007 to 313607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,877 DEBUG Processing 94/847 atomic regions from SNP 27993 to 28594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,053 DEBUG Processing 1045/1129 atomic regions from SNP 313307 to 313907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,192 DEBUG Processing 95/847 atomic regions from SNP 28294 to 28895 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,388 DEBUG Processing 1046/1129 atomic regions from SNP 313607 to 314207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,492 DEBUG Processing 96/847 atomic regions from SNP 28595 to 29196 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,733 DEBUG Processing 1047/1129 atomic regions from SNP 313907 to 314507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,795 DEBUG Processing 97/847 atomic regions from SNP 28896 to 29497 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,070 DEBUG Processing 1048/1129 atomic regions from SNP 314207 to 314807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,088 DEBUG Processing 98/847 atomic regions from SNP 29197 to 29798 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,387 DEBUG Processing 99/847 atomic regions from SNP 29498 to 30099 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,410 DEBUG Processing 1049/1129 atomic regions from SNP 314507 to 315107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,692 DEBUG Processing 100/847 atomic regions from SNP 29799 to 30400 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,758 DEBUG Processing 1050/1129 atomic regions from SNP 314807 to 315407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,006 DEBUG Processing 101/847 atomic regions from SNP 30100 to 30701 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,128 DEBUG Processing 1051/1129 atomic regions from SNP 315107 to 315707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,316 DEBUG Processing 102/847 atomic regions from SNP 30401 to 31002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,476 DEBUG Processing 1052/1129 atomic regions from SNP 315407 to 316007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,627 DEBUG Processing 103/847 atomic regions from SNP 30702 to 31302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,819 DEBUG Processing 1053/1129 atomic regions from SNP 315707 to 316307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,938 DEBUG Processing 104/847 atomic regions from SNP 31002 to 31602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,157 DEBUG Processing 1054/1129 atomic regions from SNP 316007 to 316607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,235 DEBUG Processing 105/847 atomic regions from SNP 31302 to 31902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,488 DEBUG Processing 1055/1129 atomic regions from SNP 316307 to 316907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,530 DEBUG Processing 106/847 atomic regions from SNP 31602 to 32202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,820 DEBUG Processing 107/847 atomic regions from SNP 31902 to 32502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,829 DEBUG Processing 1056/1129 atomic regions from SNP 316607 to 317207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,973 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:49:29,133 DEBUG Processing 108/847 atomic regions from SNP 32202 to 32802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,197 DEBUG Processing 1057/1129 atomic regions from SNP 316907 to 317507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,436 DEBUG Processing 109/847 atomic regions from SNP 32502 to 33102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,526 DEBUG Processing 1058/1129 atomic regions from SNP 317207 to 317807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,734 DEBUG Processing 110/847 atomic regions from SNP 32802 to 33402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,851 DEBUG Processing 1059/1129 atomic regions from SNP 317507 to 318107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,029 DEBUG Processing 111/847 atomic regions from SNP 33102 to 33702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,176 DEBUG Processing 1060/1129 atomic regions from SNP 317807 to 318407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,321 DEBUG Processing 112/847 atomic regions from SNP 33402 to 34002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,501 DEBUG Processing 1061/1129 atomic regions from SNP 318107 to 318707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,614 DEBUG Processing 113/847 atomic regions from SNP 33702 to 34302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,831 DEBUG Processing 1062/1129 atomic regions from SNP 318407 to 319007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,904 DEBUG Processing 114/847 atomic regions from SNP 34002 to 34602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,148 DEBUG Processing 1063/1129 atomic regions from SNP 318707 to 319307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,191 DEBUG Processing 115/847 atomic regions from SNP 34302 to 34902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,475 DEBUG Processing 1064/1129 atomic regions from SNP 319007 to 319607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,482 DEBUG Processing 116/847 atomic regions from SNP 34602 to 35202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,774 DEBUG Processing 117/847 atomic regions from SNP 34902 to 35502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,816 DEBUG Processing 1065/1129 atomic regions from SNP 319307 to 319907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,065 DEBUG Processing 118/847 atomic regions from SNP 35202 to 35802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,180 DEBUG Processing 1066/1129 atomic regions from SNP 319607 to 320207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,356 DEBUG Processing 119/847 atomic regions from SNP 35502 to 36102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,511 DEBUG Processing 1067/1129 atomic regions from SNP 319907 to 320507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,646 DEBUG Processing 120/847 atomic regions from SNP 35802 to 36402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,848 DEBUG Processing 1068/1129 atomic regions from SNP 320207 to 320807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,937 DEBUG Processing 121/847 atomic regions from SNP 36102 to 36702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,201 DEBUG Processing 1069/1129 atomic regions from SNP 320507 to 321107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,224 DEBUG Processing 122/847 atomic regions from SNP 36402 to 37002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,520 DEBUG Processing 123/847 atomic regions from SNP 36702 to 37302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,558 DEBUG Processing 1070/1129 atomic regions from SNP 320807 to 321407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,814 DEBUG Processing 124/847 atomic regions from SNP 37002 to 37602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,893 DEBUG Processing 1071/1129 atomic regions from SNP 321107 to 321707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,107 DEBUG Processing 125/847 atomic regions from SNP 37302 to 37902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,219 DEBUG Processing 1072/1129 atomic regions from SNP 321407 to 322007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,400 DEBUG Processing 126/847 atomic regions from SNP 37602 to 38202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,541 DEBUG Processing 1073/1129 atomic regions from SNP 321707 to 322307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,685 DEBUG Processing 127/847 atomic regions from SNP 37902 to 38502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,855 DEBUG Processing 1074/1129 atomic regions from SNP 322007 to 322607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,964 DEBUG Processing 128/847 atomic regions from SNP 38202 to 38802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,169 DEBUG Processing 1075/1129 atomic regions from SNP 322307 to 322907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,248 DEBUG Processing 129/847 atomic regions from SNP 38502 to 39102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,487 DEBUG Processing 1076/1129 atomic regions from SNP 322607 to 323207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,534 DEBUG Processing 130/847 atomic regions from SNP 38802 to 39402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,798 DEBUG Processing 1077/1129 atomic regions from SNP 322907 to 323507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,815 DEBUG Processing 131/847 atomic regions from SNP 39102 to 39702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,111 DEBUG Processing 132/847 atomic regions from SNP 39402 to 40002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,127 DEBUG Processing 1078/1129 atomic regions from SNP 323207 to 323807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,404 DEBUG Processing 133/847 atomic regions from SNP 39702 to 40302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,449 DEBUG Processing 1079/1129 atomic regions from SNP 323507 to 324107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,693 DEBUG Processing 134/847 atomic regions from SNP 40002 to 40602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,770 DEBUG Processing 1080/1129 atomic regions from SNP 323807 to 324407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,997 DEBUG Processing 135/847 atomic regions from SNP 40302 to 40902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,097 DEBUG Processing 1081/1129 atomic regions from SNP 324107 to 324707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,296 DEBUG Processing 136/847 atomic regions from SNP 40602 to 41202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,426 DEBUG Processing 1082/1129 atomic regions from SNP 324407 to 325007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,595 DEBUG Processing 137/847 atomic regions from SNP 40902 to 41502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,752 DEBUG Processing 1083/1129 atomic regions from SNP 324707 to 325307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,879 DEBUG Processing 138/847 atomic regions from SNP 41202 to 41802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,072 DEBUG Processing 1084/1129 atomic regions from SNP 325007 to 325607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,165 DEBUG Processing 139/847 atomic regions from SNP 41502 to 42102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,435 DEBUG Processing 1085/1129 atomic regions from SNP 325307 to 325907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,471 DEBUG Processing 140/847 atomic regions from SNP 41802 to 42402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,787 DEBUG Processing 1086/1129 atomic regions from SNP 325607 to 326207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,790 DEBUG Processing 141/847 atomic regions from SNP 42102 to 42702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,113 DEBUG Processing 142/847 atomic regions from SNP 42402 to 43002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,122 DEBUG Processing 1087/1129 atomic regions from SNP 325907 to 326507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,163 DEBUG Subchromosome time: 412.96335042791907, subchromosome SNPs: 304245 2025-01-31 09:49:39,166 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:39,452 DEBUG Processing 143/847 atomic regions from SNP 42702 to 43302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,469 DEBUG Processing 1088/1129 atomic regions from SNP 326207 to 326807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,778 DEBUG Processing 144/847 atomic regions from SNP 43002 to 43602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,822 DEBUG Processing 1089/1129 atomic regions from SNP 326507 to 327107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,094 DEBUG Processing 145/847 atomic regions from SNP 43302 to 43902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,111 DEBUG Segmenting atomic regions: 2025-01-31 09:49:40,171 DEBUG Processing 1090/1129 atomic regions from SNP 326807 to 327407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,246 DEBUG Processing 1/25 atomic regions from SNP 0 to 602 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:40,403 DEBUG Processing 146/847 atomic regions from SNP 43602 to 44202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,518 DEBUG Processing 1091/1129 atomic regions from SNP 327107 to 327707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,558 DEBUG Processing 2/25 atomic regions from SNP 302 to 904 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:40,725 DEBUG Processing 147/847 atomic regions from SNP 43902 to 44502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,854 DEBUG Processing 1092/1129 atomic regions from SNP 327407 to 328007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,872 DEBUG Processing 3/25 atomic regions from SNP 604 to 1206 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:41,047 DEBUG Processing 148/847 atomic regions from SNP 44202 to 44802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,182 DEBUG Processing 4/25 atomic regions from SNP 906 to 1508 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:41,183 DEBUG Processing 1093/1129 atomic regions from SNP 327707 to 328307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,360 DEBUG Processing 149/847 atomic regions from SNP 44502 to 45102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,512 DEBUG Processing 5/25 atomic regions from SNP 1208 to 1810 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:41,516 DEBUG Processing 1094/1129 atomic regions from SNP 328007 to 328607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,668 DEBUG Processing 150/847 atomic regions from SNP 44802 to 45402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,828 DEBUG Processing 6/25 atomic regions from SNP 1510 to 2112 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:41,854 DEBUG Processing 1095/1129 atomic regions from SNP 328307 to 328907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,000 DEBUG Processing 151/847 atomic regions from SNP 45102 to 45702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,159 DEBUG Processing 7/25 atomic regions from SNP 1812 to 2414 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:42,217 DEBUG Processing 1096/1129 atomic regions from SNP 328607 to 329207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,324 DEBUG Processing 152/847 atomic regions from SNP 45402 to 46002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,484 DEBUG Processing 8/25 atomic regions from SNP 2114 to 2716 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:42,582 DEBUG Processing 1097/1129 atomic regions from SNP 328907 to 329507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,663 DEBUG Processing 153/847 atomic regions from SNP 45702 to 46302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,810 DEBUG Processing 9/25 atomic regions from SNP 2416 to 3018 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:42,936 DEBUG Processing 1098/1129 atomic regions from SNP 329207 to 329807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,020 DEBUG Processing 154/847 atomic regions from SNP 46002 to 46602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,126 DEBUG Processing 10/25 atomic regions from SNP 2718 to 3320 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:43,273 DEBUG Processing 1099/1129 atomic regions from SNP 329507 to 330107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,347 DEBUG Processing 155/847 atomic regions from SNP 46302 to 46902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,441 DEBUG Processing 11/25 atomic regions from SNP 3020 to 3622 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:43,619 DEBUG Processing 1100/1129 atomic regions from SNP 329807 to 330407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,659 DEBUG Processing 156/847 atomic regions from SNP 46602 to 47202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,769 DEBUG Processing 12/25 atomic regions from SNP 3322 to 3923 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:43,959 DEBUG Processing 1101/1129 atomic regions from SNP 330107 to 330707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,962 DEBUG Processing 157/847 atomic regions from SNP 46902 to 47502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,088 DEBUG Processing 13/25 atomic regions from SNP 3623 to 4224 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:44,256 DEBUG Processing 158/847 atomic regions from SNP 47202 to 47802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,290 DEBUG Processing 1102/1129 atomic regions from SNP 330407 to 331007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,361 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:49:44,435 DEBUG Processing 14/25 atomic regions from SNP 3924 to 4525 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:44,585 DEBUG Processing 159/847 atomic regions from SNP 47502 to 48102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,641 DEBUG Processing 1103/1129 atomic regions from SNP 330707 to 331307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,788 DEBUG Processing 15/25 atomic regions from SNP 4225 to 4826 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:44,922 DEBUG Processing 160/847 atomic regions from SNP 47802 to 48402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,012 DEBUG Processing 1104/1129 atomic regions from SNP 331007 to 331607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,139 DEBUG Processing 16/25 atomic regions from SNP 4526 to 5127 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:45,225 DEBUG Processing 161/847 atomic regions from SNP 48102 to 48702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,377 DEBUG Processing 1105/1129 atomic regions from SNP 331307 to 331907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,471 DEBUG Processing 17/25 atomic regions from SNP 4827 to 5428 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:45,543 DEBUG Processing 162/847 atomic regions from SNP 48402 to 49002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,741 DEBUG Processing 1106/1129 atomic regions from SNP 331607 to 332207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,816 DEBUG Processing 18/25 atomic regions from SNP 5128 to 5729 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:45,877 DEBUG Processing 163/847 atomic regions from SNP 48702 to 49302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,113 DEBUG Processing 1107/1129 atomic regions from SNP 331907 to 332507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,169 DEBUG Processing 19/25 atomic regions from SNP 5429 to 6030 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:46,181 DEBUG Processing 164/847 atomic regions from SNP 49002 to 49602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,464 DEBUG Processing 1108/1129 atomic regions from SNP 332207 to 332807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,475 DEBUG Processing 165/847 atomic regions from SNP 49302 to 49902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,502 DEBUG Processing 20/25 atomic regions from SNP 5730 to 6331 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:46,771 DEBUG Processing 166/847 atomic regions from SNP 49602 to 50202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,815 DEBUG Processing 1109/1129 atomic regions from SNP 332507 to 333107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,843 DEBUG Processing 21/25 atomic regions from SNP 6031 to 6632 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:47,076 DEBUG Processing 167/847 atomic regions from SNP 49902 to 50502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,188 DEBUG Processing 22/25 atomic regions from SNP 6332 to 6933 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:47,189 DEBUG Processing 1110/1129 atomic regions from SNP 332807 to 333407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,384 DEBUG Processing 168/847 atomic regions from SNP 50202 to 50802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,538 DEBUG Processing 23/25 atomic regions from SNP 6633 to 7234 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:47,564 DEBUG Processing 1111/1129 atomic regions from SNP 333107 to 333707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,685 DEBUG Processing 169/847 atomic regions from SNP 50502 to 51102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,881 DEBUG Processing 24/25 atomic regions from SNP 6934 to 7535 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:47,905 DEBUG Processing 1112/1129 atomic regions from SNP 333407 to 334007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,979 DEBUG Processing 170/847 atomic regions from SNP 50802 to 51402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,231 DEBUG Processing 25/25 atomic regions from SNP 7235 to 7836 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:48,240 DEBUG Processing 1113/1129 atomic regions from SNP 333707 to 334307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,285 DEBUG Processing 171/847 atomic regions from SNP 51102 to 51702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,441 DEBUG Unique SNPs positions in subchromosome 2: 7837 2025-01-31 09:49:48,459 DEBUG Subchromosome time: 9.29311288392637, subchromosome SNPs: 7837 2025-01-31 09:49:48,459 DEBUG Estimated BADs: [2.54, 0.42, 1.27, 0.63, 25.37, 2.54, 10.15, 5.07, 0.42, 5.07, 0.51, 2.54, 0.42, 1.27, 0.36, 1.27, 0.85, 2.54, 0.32, 1.27, 12.69, 0.32, 2.54, 7.61, 2.54, 0.32, 2.54, 0.85, 15.22, 1.27, 12.69, 5.07, 0.42, 2.54, 5.07, 2.54, 0.85, 2.54, 7.61, 2.54, 7.61, 2.54, 2.54, 12.69] SNP counts: [7934, 2980, 10797, 4505, 138, 11672, 14953, 6566, 1186, 4262, 8665, 1779, 4493, 9293, 4811, 10877, 8930, 24292, 1793, 4089, 1320, 6294, 1973, 2846, 4765, 9034, 12588, 7096, 208, 11107, 2010, 6255, 1513, 6045, 9368, 8899, 11753, 14650, 9607, 10834, 8958, 13107, 3736, 4101] SNP IDs counts: [7934, 2980, 10797, 4505, 138, 11672, 14953, 6566, 1186, 4262, 8665, 1779, 4493, 9293, 4811, 10877, 8930, 24292, 1793, 4089, 1320, 6294, 1973, 2846, 4765, 9034, 12588, 7096, 208, 11107, 2010, 6255, 1513, 6045, 9368, 8899, 11753, 14650, 9607, 10834, 8958, 13107, 3736, 4101] Critical gap: 729860bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.37Mbp, 9.21Mbp, 15.33Mbp, 18.03Mbp, 18.10Mbp, 24.92Mbp, 32.82Mbp, 36.27Mbp, 37.05Mbp, 39.38Mbp, 44.54Mbp, 45.49Mbp, 48.31Mbp, 53.40Mbp, 56.52Mbp, 62.65Mbp, 67.80Mbp, 80.92Mbp, 82.07Mbp, 84.65Mbp, 85.36Mbp, 89.46Mbp, 90.84Mbp, 92.32Mbp, 94.89Mbp, 101.03Mbp, 107.90Mbp, 112.24Mbp, 112.35Mbp, 118.53Mbp, 119.58Mbp, 123.00Mbp, 123.92Mbp, 127.25Mbp, 132.25Mbp, 137.16Mbp, 143.83Mbp, 152.31Mbp, 157.43Mbp, 163.29Mbp, 168.06Mbp, 175.18Mbp[1.52Mbp], 179.83Mbp, 182.11Mbp] 2025-01-31 09:49:48,459 DEBUG chr2 time: 9.293699297006242 s 2025-01-31 09:49:48,586 DEBUG Processing 1114/1129 atomic regions from SNP 334007 to 334607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,603 DEBUG Processing 172/847 atomic regions from SNP 51402 to 52002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,714 DEBUG chr2: Fitting background model for 44 segments 2025-01-31 09:49:48,903 DEBUG Processing 173/847 atomic regions from SNP 51702 to 52302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,924 DEBUG Processing 1115/1129 atomic regions from SNP 334307 to 334907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,195 DEBUG Processing 174/847 atomic regions from SNP 52002 to 52602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,253 DEBUG Processing 1116/1129 atomic regions from SNP 334607 to 335207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,482 DEBUG Processing 175/847 atomic regions from SNP 52302 to 52902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,593 DEBUG Processing 1117/1129 atomic regions from SNP 334907 to 335507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,762 DEBUG Processing 176/847 atomic regions from SNP 52602 to 53202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,918 DEBUG Processing 1118/1129 atomic regions from SNP 335207 to 335807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,040 DEBUG Processing 177/847 atomic regions from SNP 52902 to 53502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,229 DEBUG Processing 1119/1129 atomic regions from SNP 335507 to 336107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,321 DEBUG Processing 178/847 atomic regions from SNP 53202 to 53802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,494 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:49:50,535 DEBUG chr7: Signal quantile: 0.986. signal threshold: 16. Best RMSEA: 0.014 2025-01-31 09:49:50,578 DEBUG Processing 1120/1129 atomic regions from SNP 335807 to 336407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,637 DEBUG Processing 179/847 atomic regions from SNP 53502 to 54102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,937 DEBUG Processing 1121/1129 atomic regions from SNP 336107 to 336707 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,966 DEBUG Processing 180/847 atomic regions from SNP 53802 to 54402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,286 DEBUG Processing 181/847 atomic regions from SNP 54102 to 54702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,290 DEBUG Processing 1122/1129 atomic regions from SNP 336407 to 337007 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,602 DEBUG Processing 182/847 atomic regions from SNP 54402 to 55002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,624 DEBUG Processing 1123/1129 atomic regions from SNP 336707 to 337307 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,927 DEBUG Processing 183/847 atomic regions from SNP 54702 to 55302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,957 DEBUG Processing 1124/1129 atomic regions from SNP 337007 to 337607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,224 DEBUG Processing 184/847 atomic regions from SNP 55002 to 55602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,281 DEBUG Processing 1125/1129 atomic regions from SNP 337307 to 337907 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,535 DEBUG Processing 185/847 atomic regions from SNP 55302 to 55902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,622 DEBUG Processing 1126/1129 atomic regions from SNP 337607 to 338207 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,827 DEBUG Processing 186/847 atomic regions from SNP 55602 to 56202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,980 DEBUG Processing 1127/1129 atomic regions from SNP 337907 to 338507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,106 DEBUG Processing 187/847 atomic regions from SNP 55902 to 56502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,327 DEBUG Processing 1128/1129 atomic regions from SNP 338207 to 338807 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,417 DEBUG Processing 188/847 atomic regions from SNP 56202 to 56802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,672 DEBUG Processing 1129/1129 atomic regions from SNP 338507 to 339107 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,711 DEBUG Processing 189/847 atomic regions from SNP 56502 to 57102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,869 DEBUG Unique SNPs positions in subchromosome 1: 339108 2025-01-31 09:49:54,005 DEBUG Processing 190/847 atomic regions from SNP 56802 to 57402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,289 DEBUG Processing 191/847 atomic regions from SNP 57102 to 57702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,603 DEBUG Processing 192/847 atomic regions from SNP 57402 to 58002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,916 DEBUG Processing 193/847 atomic regions from SNP 57702 to 58302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,179 DEBUG chr7 total SNP count: 229924 2025-01-31 09:49:55,179 DEBUG chr7 length: 145441459 2025-01-31 09:49:55,179 DEBUG ----------------------------------------- 2025-01-31 09:49:55,179 INFO Processing SNPs in chr7 2025-01-31 09:49:55,208 DEBUG Processing 194/847 atomic regions from SNP 58002 to 58602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,517 DEBUG Processing 195/847 atomic regions from SNP 58302 to 58902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,539 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 6738), (6738, 20583), (20583, 20599), (20599, 229924)] 2025-01-31 09:49:55,637 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:55,830 DEBUG Processing 196/847 atomic regions from SNP 58602 to 59202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,128 DEBUG Processing 197/847 atomic regions from SNP 58902 to 59502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,421 DEBUG Processing 198/847 atomic regions from SNP 59202 to 59802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,448 DEBUG Segmenting atomic regions: 2025-01-31 09:49:56,545 DEBUG Processing 1/21 atomic regions from SNP 0 to 607 for chr7 (subchromosome 1 of 4). 2025-01-31 09:49:56,712 DEBUG Processing 199/847 atomic regions from SNP 59502 to 60102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,800 DEBUG Processing 2/21 atomic regions from SNP 307 to 914 for chr7 (subchromosome 1 of 4). 2025-01-31 09:49:56,992 DEBUG Processing 200/847 atomic regions from SNP 59802 to 60402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,062 DEBUG Processing 3/21 atomic regions from SNP 614 to 1221 for chr7 (subchromosome 1 of 4). 2025-01-31 09:49:57,271 DEBUG Processing 201/847 atomic regions from SNP 60102 to 60702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,353 DEBUG Processing 4/21 atomic regions from SNP 921 to 1528 for chr7 (subchromosome 1 of 4). 2025-01-31 09:49:57,550 DEBUG Processing 202/847 atomic regions from SNP 60402 to 61002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,632 DEBUG Processing 5/21 atomic regions from SNP 1228 to 1835 for chr7 (subchromosome 1 of 4). 2025-01-31 09:49:57,839 DEBUG Processing 203/847 atomic regions from SNP 60702 to 61302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,920 DEBUG Processing 6/21 atomic regions from SNP 1535 to 2142 for chr7 (subchromosome 1 of 4). 2025-01-31 09:49:58,056 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:49:58,091 DEBUG chr10: Signal quantile: 0.989. signal threshold: 14. Best RMSEA: 0.017 2025-01-31 09:49:58,181 DEBUG Processing 204/847 atomic regions from SNP 61002 to 61602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,229 DEBUG Processing 7/21 atomic regions from SNP 1842 to 2449 for chr7 (subchromosome 1 of 4). 2025-01-31 09:49:58,530 DEBUG Processing 205/847 atomic regions from SNP 61302 to 61902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,567 DEBUG Processing 8/21 atomic regions from SNP 2149 to 2756 for chr7 (subchromosome 1 of 4). 2025-01-31 09:49:58,871 DEBUG Processing 206/847 atomic regions from SNP 61602 to 62202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,910 DEBUG Processing 9/21 atomic regions from SNP 2456 to 3063 for chr7 (subchromosome 1 of 4). 2025-01-31 09:49:59,204 DEBUG Processing 207/847 atomic regions from SNP 61902 to 62502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,234 DEBUG Processing 10/21 atomic regions from SNP 2763 to 3370 for chr7 (subchromosome 1 of 4). 2025-01-31 09:49:59,508 DEBUG Processing 208/847 atomic regions from SNP 62202 to 62802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,550 DEBUG Processing 11/21 atomic regions from SNP 3070 to 3677 for chr7 (subchromosome 1 of 4). 2025-01-31 09:49:59,802 DEBUG Processing 209/847 atomic regions from SNP 62502 to 63102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,818 DEBUG Processing 12/21 atomic regions from SNP 3377 to 3983 for chr7 (subchromosome 1 of 4). 2025-01-31 09:50:00,088 DEBUG Processing 13/21 atomic regions from SNP 3683 to 4289 for chr7 (subchromosome 1 of 4). 2025-01-31 09:50:00,111 DEBUG Processing 210/847 atomic regions from SNP 62802 to 63402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,355 DEBUG Processing 14/21 atomic regions from SNP 3989 to 4595 for chr7 (subchromosome 1 of 4). 2025-01-31 09:50:00,417 DEBUG Processing 211/847 atomic regions from SNP 63102 to 63702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,632 DEBUG Processing 15/21 atomic regions from SNP 4295 to 4901 for chr7 (subchromosome 1 of 4). 2025-01-31 09:50:00,726 DEBUG Processing 212/847 atomic regions from SNP 63402 to 64002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,953 DEBUG Processing 16/21 atomic regions from SNP 4601 to 5207 for chr7 (subchromosome 1 of 4). 2025-01-31 09:50:01,025 DEBUG Processing 213/847 atomic regions from SNP 63702 to 64302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,275 DEBUG Processing 17/21 atomic regions from SNP 4907 to 5513 for chr7 (subchromosome 1 of 4). 2025-01-31 09:50:01,321 DEBUG Processing 214/847 atomic regions from SNP 64002 to 64602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,572 DEBUG Processing 18/21 atomic regions from SNP 5213 to 5819 for chr7 (subchromosome 1 of 4). 2025-01-31 09:50:01,619 DEBUG Processing 215/847 atomic regions from SNP 64302 to 64902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,892 DEBUG Processing 19/21 atomic regions from SNP 5519 to 6125 for chr7 (subchromosome 1 of 4). 2025-01-31 09:50:01,938 DEBUG Processing 216/847 atomic regions from SNP 64602 to 65202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,222 DEBUG Processing 20/21 atomic regions from SNP 5825 to 6431 for chr7 (subchromosome 1 of 4). 2025-01-31 09:50:02,259 DEBUG Processing 217/847 atomic regions from SNP 64902 to 65502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,423 DEBUG chr10 total SNP count: 222586 2025-01-31 09:50:02,423 DEBUG chr10 length: 130694993 2025-01-31 09:50:02,423 DEBUG ----------------------------------------- 2025-01-31 09:50:02,423 INFO Processing SNPs in chr10 2025-01-31 09:50:02,525 DEBUG Processing 21/21 atomic regions from SNP 6131 to 6737 for chr7 (subchromosome 1 of 4). 2025-01-31 09:50:02,577 DEBUG Processing 218/847 atomic regions from SNP 65202 to 65802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,642 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 222586)] 2025-01-31 09:50:02,734 DEBUG Unique SNPs positions in subchromosome 1: 6738 2025-01-31 09:50:02,753 DEBUG Subchromosome time: 7.115418037981726, subchromosome SNPs: 6738 2025-01-31 09:50:02,757 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:02,789 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:02,891 DEBUG Processing 219/847 atomic regions from SNP 65502 to 66102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,181 DEBUG Processing 220/847 atomic regions from SNP 65802 to 66402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,470 DEBUG Processing 221/847 atomic regions from SNP 66102 to 66702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,767 DEBUG Processing 222/847 atomic regions from SNP 66402 to 67002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,080 DEBUG Processing 223/847 atomic regions from SNP 66702 to 67302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,381 DEBUG Processing 224/847 atomic regions from SNP 67002 to 67602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,417 DEBUG Segmenting atomic regions: 2025-01-31 09:50:04,516 DEBUG Processing 1/45 atomic regions from SNP 0 to 601 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:04,686 DEBUG Processing 225/847 atomic regions from SNP 67302 to 67902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,815 DEBUG Processing 2/45 atomic regions from SNP 301 to 902 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:04,993 DEBUG Processing 226/847 atomic regions from SNP 67602 to 68202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,118 DEBUG Processing 3/45 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:05,304 DEBUG Processing 227/847 atomic regions from SNP 67902 to 68502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,414 DEBUG Processing 4/45 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:05,611 DEBUG Processing 228/847 atomic regions from SNP 68202 to 68802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,708 DEBUG Processing 5/45 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:05,919 DEBUG Processing 229/847 atomic regions from SNP 68502 to 69102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,002 DEBUG Processing 6/45 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:06,224 DEBUG Processing 230/847 atomic regions from SNP 68802 to 69402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,296 DEBUG Processing 7/45 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:06,531 DEBUG Processing 231/847 atomic regions from SNP 69102 to 69702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,591 DEBUG Processing 8/45 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:06,840 DEBUG Processing 232/847 atomic regions from SNP 69402 to 70002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,887 DEBUG Processing 9/45 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:07,149 DEBUG Processing 233/847 atomic regions from SNP 69702 to 70302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,182 DEBUG Processing 10/45 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:07,460 DEBUG Processing 234/847 atomic regions from SNP 70002 to 70602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,480 DEBUG Processing 11/45 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:07,774 DEBUG Processing 235/847 atomic regions from SNP 70302 to 70902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,787 DEBUG Processing 12/45 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:08,090 DEBUG Processing 236/847 atomic regions from SNP 70602 to 71202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,106 DEBUG Processing 13/45 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:08,403 DEBUG Processing 237/847 atomic regions from SNP 70902 to 71502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,437 DEBUG Processing 14/45 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:08,716 DEBUG Processing 238/847 atomic regions from SNP 71202 to 71802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,735 DEBUG Processing 15/45 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:09,027 DEBUG Processing 239/847 atomic regions from SNP 71502 to 72102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,029 DEBUG Processing 16/45 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:09,325 DEBUG Processing 17/45 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:09,339 DEBUG Processing 240/847 atomic regions from SNP 71802 to 72402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,622 DEBUG Processing 18/45 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:09,650 DEBUG Processing 241/847 atomic regions from SNP 72102 to 72702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,914 DEBUG Processing 19/45 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:09,958 DEBUG Processing 242/847 atomic regions from SNP 72402 to 73002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,205 DEBUG Processing 20/45 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:10,263 DEBUG Processing 243/847 atomic regions from SNP 72702 to 73302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,500 DEBUG Processing 21/45 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:10,573 DEBUG Processing 244/847 atomic regions from SNP 73002 to 73602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,794 DEBUG Processing 22/45 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:10,886 DEBUG Processing 245/847 atomic regions from SNP 73302 to 73902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,085 DEBUG Processing 23/45 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:11,190 DEBUG Processing 246/847 atomic regions from SNP 73602 to 74202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,376 DEBUG Processing 24/45 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:11,499 DEBUG Processing 247/847 atomic regions from SNP 73902 to 74502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,703 DEBUG Processing 25/45 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:11,804 DEBUG Processing 248/847 atomic regions from SNP 74202 to 74802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,021 DEBUG Processing 26/45 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:12,100 DEBUG Processing 249/847 atomic regions from SNP 74502 to 75102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,338 DEBUG Processing 27/45 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:12,394 DEBUG Processing 250/847 atomic regions from SNP 74802 to 75402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,652 DEBUG Processing 28/45 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:12,687 DEBUG Processing 251/847 atomic regions from SNP 75102 to 75702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,937 DEBUG Processing 29/45 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:12,977 DEBUG Processing 252/847 atomic regions from SNP 75402 to 76002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,227 DEBUG Processing 30/45 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:13,266 DEBUG Processing 253/847 atomic regions from SNP 75702 to 76302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,534 DEBUG Processing 31/45 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:13,571 DEBUG Processing 254/847 atomic regions from SNP 76002 to 76602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,828 DEBUG Processing 32/45 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:13,856 DEBUG Processing 255/847 atomic regions from SNP 76302 to 76902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,092 DEBUG Processing 33/45 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:14,149 DEBUG Processing 256/847 atomic regions from SNP 76602 to 77202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,369 DEBUG Processing 34/45 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:14,472 DEBUG Processing 257/847 atomic regions from SNP 76902 to 77502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,494 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:50:14,540 DEBUG chr8: Signal quantile: 0.989. signal threshold: 16. Best RMSEA: 0.017 2025-01-31 09:50:14,670 DEBUG Processing 35/45 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:14,801 DEBUG Processing 258/847 atomic regions from SNP 77202 to 77802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,969 DEBUG Processing 36/45 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:15,111 DEBUG Processing 259/847 atomic regions from SNP 77502 to 78102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,267 DEBUG Processing 37/45 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:15,422 DEBUG Processing 260/847 atomic regions from SNP 77802 to 78402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,566 DEBUG Processing 38/45 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:15,732 DEBUG Processing 261/847 atomic regions from SNP 78102 to 78702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,849 DEBUG Processing 39/45 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:16,025 DEBUG Processing 262/847 atomic regions from SNP 78402 to 79002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,153 DEBUG Processing 40/45 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:16,316 DEBUG Processing 263/847 atomic regions from SNP 78702 to 79302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,469 DEBUG Processing 41/45 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:16,605 DEBUG Processing 264/847 atomic regions from SNP 79002 to 79602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,783 DEBUG Processing 42/45 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:16,924 DEBUG Processing 265/847 atomic regions from SNP 79302 to 79902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,101 DEBUG Processing 43/45 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:17,250 DEBUG Processing 266/847 atomic regions from SNP 79602 to 80202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,439 DEBUG Processing 44/45 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:17,563 DEBUG Processing 267/847 atomic regions from SNP 79902 to 80502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,761 DEBUG Processing 45/45 atomic regions from SNP 13244 to 13844 for chr7 (subchromosome 2 of 4). 2025-01-31 09:50:17,870 DEBUG Processing 268/847 atomic regions from SNP 80202 to 80802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,951 DEBUG Unique SNPs positions in subchromosome 2: 13845 2025-01-31 09:50:17,980 DEBUG Subchromosome time: 15.222915630089119, subchromosome SNPs: 13845 2025-01-31 09:50:18,028 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:18,173 DEBUG Processing 269/847 atomic regions from SNP 80502 to 81102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,479 DEBUG Processing 270/847 atomic regions from SNP 80802 to 81402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,790 DEBUG Processing 271/847 atomic regions from SNP 81102 to 81702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,947 DEBUG chr8 total SNP count: 217661 2025-01-31 09:50:18,947 DEBUG chr8 length: 129401213 2025-01-31 09:50:18,947 DEBUG ----------------------------------------- 2025-01-31 09:50:18,947 INFO Processing SNPs in chr8 2025-01-31 09:50:19,085 DEBUG Processing 272/847 atomic regions from SNP 81402 to 82002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,161 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 217661)] 2025-01-31 09:50:19,304 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:19,389 DEBUG Processing 273/847 atomic regions from SNP 81702 to 82302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,692 DEBUG Processing 274/847 atomic regions from SNP 82002 to 82602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,994 DEBUG Processing 275/847 atomic regions from SNP 82302 to 82902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,298 DEBUG Processing 276/847 atomic regions from SNP 82602 to 83202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,601 DEBUG Processing 277/847 atomic regions from SNP 82902 to 83502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,903 DEBUG Processing 278/847 atomic regions from SNP 83202 to 83802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,233 DEBUG Processing 279/847 atomic regions from SNP 83502 to 84102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,539 DEBUG Processing 280/847 atomic regions from SNP 83802 to 84402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,842 DEBUG Processing 281/847 atomic regions from SNP 84102 to 84702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,145 DEBUG Processing 282/847 atomic regions from SNP 84402 to 85002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,449 DEBUG Processing 283/847 atomic regions from SNP 84702 to 85302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,754 DEBUG Processing 284/847 atomic regions from SNP 85002 to 85602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,057 DEBUG Processing 285/847 atomic regions from SNP 85302 to 85902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,362 DEBUG Processing 286/847 atomic regions from SNP 85602 to 86202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,665 DEBUG Processing 287/847 atomic regions from SNP 85902 to 86502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,969 DEBUG Processing 288/847 atomic regions from SNP 86202 to 86802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,273 DEBUG Processing 289/847 atomic regions from SNP 86502 to 87102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,379 DEBUG Subchromosome time: 461.37507330894005, subchromosome SNPs: 339108 2025-01-31 09:50:24,380 DEBUG Estimated BADs: [0.82, 4.91, 1.23, 0.82, 4.91, 1.23, 4.91, 2.45, 0.61, 2.45, 4.91, 12.27, 1.23, 24.54, 2.45, 17.18, 2.45, 4.91, 24.54, 4.91, 22.08, 0.82, 2.45, 0.49, 4.91, 2.45, 0.82, 2.45, 9.81, 2.45, 0.61, 2.45, 0.49, 1.23, 4.91, 24.54, 2.45, 17.18, 4.91, 2.45, 7.36, 22.08, 4.91, 2.45, 9.81, 4.91] SNP counts: [10680, 853, 11391, 23813, 364, 4202, 11007, 14384, 4790, 15525, 9996, 1303, 12502, 176, 3542, 1977, 16972, 1631, 597, 13305, 422, 20179, 3594, 16739, 3369, 5684, 3829, 10215, 10035, 5920, 6647, 1203, 6845, 4231, 29750, 364, 6324, 1056, 1565, 10515, 4504, 1106, 7501, 10024, 2260, 6217] SNP IDs counts: [10680, 853, 11391, 23813, 364, 4202, 11007, 14384, 4790, 15525, 9996, 1303, 12502, 176, 3542, 1977, 16972, 1631, 597, 13305, 422, 20179, 3594, 16739, 3369, 5684, 3829, 10215, 10035, 5920, 6647, 1203, 6845, 4231, 29750, 364, 6324, 1056, 1565, 10515, 4504, 1106, 7501, 10024, 2260, 6217] Critical gap: 759151bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 9.54Mbp, 9.99Mbp, 16.61Mbp, 30.77Mbp, 30.98Mbp, 33.46Mbp, 39.36Mbp, 47.52Mbp, 50.46Mbp, 59.11Mbp, 64.52Mbp, 65.22Mbp, 72.22Mbp, 72.31Mbp, 74.23Mbp, 75.34Mbp, 84.84Mbp, 86.21Mbp, 86.52Mbp, 93.61Mbp, 93.83Mbp, 105.98Mbp, 108.02Mbp, 118.31Mbp, 120.09Mbp, 123.26Mbp, 125.43Mbp, 131.05Mbp, 136.29Mbp, 139.54Mbp, 143.70Mbp, 144.41Mbp, 148.64Mbp, 151.03Mbp, 167.21Mbp, 167.39Mbp, 170.84Mbp, 171.41Mbp, 172.28Mbp, 178.30Mbp, 180.70Mbp, 181.28Mbp, 185.40Mbp, 190.75Mbp, 191.94Mbp, 195.47Mbp] 2025-01-31 09:50:24,380 DEBUG chr1 time: 461.37563409202266 s 2025-01-31 09:50:24,580 DEBUG Processing 290/847 atomic regions from SNP 86802 to 87402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,677 DEBUG chr1: Fitting background model for 46 segments 2025-01-31 09:50:24,887 DEBUG Processing 291/847 atomic regions from SNP 87102 to 87702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,193 DEBUG Processing 292/847 atomic regions from SNP 87402 to 88002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,499 DEBUG Processing 293/847 atomic regions from SNP 87702 to 88302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,799 DEBUG Processing 294/847 atomic regions from SNP 88002 to 88602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,103 DEBUG Processing 295/847 atomic regions from SNP 88302 to 88902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,403 DEBUG Processing 296/847 atomic regions from SNP 88602 to 89202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,708 DEBUG Processing 297/847 atomic regions from SNP 88902 to 89502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,015 DEBUG Processing 298/847 atomic regions from SNP 89202 to 89802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,344 DEBUG Processing 299/847 atomic regions from SNP 89502 to 90102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,675 DEBUG Processing 300/847 atomic regions from SNP 89802 to 90402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,006 DEBUG Processing 301/847 atomic regions from SNP 90102 to 90702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,322 DEBUG Processing 302/847 atomic regions from SNP 90402 to 91002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,628 DEBUG Processing 303/847 atomic regions from SNP 90702 to 91302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,932 DEBUG Processing 304/847 atomic regions from SNP 91002 to 91602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,246 DEBUG Processing 305/847 atomic regions from SNP 91302 to 91902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,469 DEBUG Segmenting atomic regions: 2025-01-31 09:50:29,562 DEBUG Processing 306/847 atomic regions from SNP 91602 to 92202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,564 DEBUG Processing 1/740 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,857 DEBUG Processing 2/740 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,878 DEBUG Processing 307/847 atomic regions from SNP 91902 to 92502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,150 DEBUG Processing 3/740 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,192 DEBUG Processing 308/847 atomic regions from SNP 92202 to 92802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,449 DEBUG Processing 4/740 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,501 DEBUG Processing 309/847 atomic regions from SNP 92502 to 93102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,748 DEBUG Processing 5/740 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,812 DEBUG Processing 310/847 atomic regions from SNP 92802 to 93402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,050 DEBUG Processing 6/740 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,122 DEBUG Processing 311/847 atomic regions from SNP 93102 to 93702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,352 DEBUG Processing 7/740 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,454 DEBUG Processing 312/847 atomic regions from SNP 93402 to 94002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,665 DEBUG Processing 8/740 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,771 DEBUG Processing 313/847 atomic regions from SNP 93702 to 94302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,989 DEBUG Processing 9/740 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,081 DEBUG Processing 314/847 atomic regions from SNP 94002 to 94602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,289 DEBUG Processing 10/740 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,389 DEBUG Processing 315/847 atomic regions from SNP 94302 to 94902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,587 DEBUG Processing 11/740 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,715 DEBUG Processing 316/847 atomic regions from SNP 94602 to 95202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,881 DEBUG Processing 12/740 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,062 DEBUG Processing 317/847 atomic regions from SNP 94902 to 95502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,175 DEBUG Processing 13/740 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,370 DEBUG Processing 318/847 atomic regions from SNP 95202 to 95802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,475 DEBUG Processing 14/740 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,680 DEBUG Processing 319/847 atomic regions from SNP 95502 to 96102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,773 DEBUG Processing 15/740 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,984 DEBUG Processing 320/847 atomic regions from SNP 95802 to 96402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,066 DEBUG Processing 16/740 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,290 DEBUG Processing 321/847 atomic regions from SNP 96102 to 96702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,386 DEBUG Processing 17/740 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,596 DEBUG Processing 322/847 atomic regions from SNP 96402 to 97002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,682 DEBUG Processing 18/740 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,904 DEBUG Processing 323/847 atomic regions from SNP 96702 to 97302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,978 DEBUG Processing 19/740 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,212 DEBUG Processing 324/847 atomic regions from SNP 97002 to 97602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,272 DEBUG Processing 20/740 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,520 DEBUG Processing 325/847 atomic regions from SNP 97302 to 97902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,568 DEBUG Processing 21/740 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,829 DEBUG Processing 326/847 atomic regions from SNP 97602 to 98202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,865 DEBUG Processing 22/740 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,136 DEBUG Processing 327/847 atomic regions from SNP 97902 to 98502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,161 DEBUG Processing 23/740 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,448 DEBUG Processing 328/847 atomic regions from SNP 98202 to 98802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,459 DEBUG Processing 24/740 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,759 DEBUG Processing 25/740 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,762 DEBUG Processing 329/847 atomic regions from SNP 98502 to 99102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,067 DEBUG Processing 26/740 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,079 DEBUG Processing 330/847 atomic regions from SNP 98802 to 99402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,393 DEBUG Processing 331/847 atomic regions from SNP 99102 to 99702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,396 DEBUG Processing 27/740 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,693 DEBUG Processing 28/740 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,710 DEBUG Processing 332/847 atomic regions from SNP 99402 to 100002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,989 DEBUG Processing 29/740 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,024 DEBUG Processing 333/847 atomic regions from SNP 99702 to 100302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,286 DEBUG Processing 30/740 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,332 DEBUG Processing 334/847 atomic regions from SNP 100002 to 100602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,579 DEBUG Processing 31/740 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,643 DEBUG Processing 335/847 atomic regions from SNP 100302 to 100902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,880 DEBUG Processing 32/740 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,952 DEBUG Processing 336/847 atomic regions from SNP 100602 to 101202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,181 DEBUG Processing 33/740 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,263 DEBUG Processing 337/847 atomic regions from SNP 100902 to 101502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,479 DEBUG Processing 34/740 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,572 DEBUG Processing 338/847 atomic regions from SNP 101202 to 101802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,776 DEBUG Processing 35/740 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,880 DEBUG Processing 339/847 atomic regions from SNP 101502 to 102102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,073 DEBUG Processing 36/740 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,189 DEBUG Processing 340/847 atomic regions from SNP 101802 to 102402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,370 DEBUG Processing 37/740 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,497 DEBUG Processing 341/847 atomic regions from SNP 102102 to 102702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,666 DEBUG Processing 38/740 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,810 DEBUG Processing 342/847 atomic regions from SNP 102402 to 103002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,952 DEBUG Processing 39/740 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,124 DEBUG Processing 343/847 atomic regions from SNP 102702 to 103302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,245 DEBUG Processing 40/740 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,433 DEBUG Processing 344/847 atomic regions from SNP 103002 to 103602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,541 DEBUG Processing 41/740 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,741 DEBUG Processing 345/847 atomic regions from SNP 103302 to 103902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,836 DEBUG Processing 42/740 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,047 DEBUG Processing 346/847 atomic regions from SNP 103602 to 104202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,131 DEBUG Processing 43/740 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,354 DEBUG Processing 347/847 atomic regions from SNP 103902 to 104502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,426 DEBUG Processing 44/740 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,662 DEBUG Processing 348/847 atomic regions from SNP 104202 to 104802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,724 DEBUG Processing 45/740 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,970 DEBUG Processing 349/847 atomic regions from SNP 104502 to 105102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,021 DEBUG Processing 46/740 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,280 DEBUG Processing 350/847 atomic regions from SNP 104802 to 105402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,321 DEBUG Processing 47/740 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,493 DEBUG Segmenting atomic regions: 2025-01-31 09:50:43,590 DEBUG Processing 351/847 atomic regions from SNP 105102 to 105702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,592 DEBUG Processing 1/696 atomic regions from SNP 0 to 601 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:43,621 DEBUG Processing 48/740 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,892 DEBUG Processing 2/696 atomic regions from SNP 301 to 902 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:43,907 DEBUG Processing 352/847 atomic regions from SNP 105402 to 106002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,924 DEBUG Processing 49/740 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,196 DEBUG Processing 3/696 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:44,226 DEBUG Processing 353/847 atomic regions from SNP 105702 to 106302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,228 DEBUG Processing 50/740 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,495 DEBUG Processing 4/696 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:44,526 DEBUG Processing 51/740 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,543 DEBUG Processing 354/847 atomic regions from SNP 106002 to 106602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,788 DEBUG Processing 5/696 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:44,822 DEBUG Processing 52/740 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,857 DEBUG Processing 355/847 atomic regions from SNP 106302 to 106902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,108 DEBUG Processing 6/696 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:45,120 DEBUG Processing 53/740 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,168 DEBUG Processing 356/847 atomic regions from SNP 106602 to 107202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,418 DEBUG Processing 54/740 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,438 DEBUG Processing 7/696 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:45,480 DEBUG Processing 357/847 atomic regions from SNP 106902 to 107502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,604 DEBUG Segmenting atomic regions: 2025-01-31 09:50:45,698 DEBUG Processing 1/724 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,715 DEBUG Processing 55/740 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,750 DEBUG Processing 8/696 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:45,791 DEBUG Processing 358/847 atomic regions from SNP 107202 to 107802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,987 DEBUG Processing 2/724 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,015 DEBUG Processing 56/740 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,075 DEBUG Processing 9/696 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:46,108 DEBUG Processing 359/847 atomic regions from SNP 107502 to 108102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,305 DEBUG Processing 3/724 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,328 DEBUG Processing 57/740 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,411 DEBUG Processing 10/696 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:46,422 DEBUG Processing 360/847 atomic regions from SNP 107802 to 108402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,629 DEBUG Processing 4/724 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,649 DEBUG Processing 58/740 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,736 DEBUG Processing 361/847 atomic regions from SNP 108102 to 108702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,742 DEBUG Processing 11/696 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:46,928 DEBUG Processing 5/724 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,951 DEBUG Processing 59/740 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,052 DEBUG Processing 362/847 atomic regions from SNP 108402 to 109002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,076 DEBUG Processing 12/696 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:47,231 DEBUG Processing 6/724 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,252 DEBUG Processing 60/740 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,368 DEBUG Processing 363/847 atomic regions from SNP 108702 to 109302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,406 DEBUG Processing 13/696 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:47,552 DEBUG Processing 7/724 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,555 DEBUG Processing 61/740 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,683 DEBUG Processing 364/847 atomic regions from SNP 109002 to 109602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,742 DEBUG Processing 14/696 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:47,864 DEBUG Processing 62/740 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,876 DEBUG Processing 8/724 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,996 DEBUG Processing 365/847 atomic regions from SNP 109302 to 109902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,071 DEBUG Processing 15/696 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:48,168 DEBUG Processing 63/740 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,178 DEBUG Processing 9/724 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,317 DEBUG Processing 366/847 atomic regions from SNP 109602 to 110202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,369 DEBUG Processing 16/696 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:48,476 DEBUG Processing 10/724 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,495 DEBUG Processing 64/740 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,629 DEBUG Processing 367/847 atomic regions from SNP 109902 to 110502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,670 DEBUG Processing 17/696 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:48,773 DEBUG Processing 11/724 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,793 DEBUG Processing 65/740 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,950 DEBUG Processing 368/847 atomic regions from SNP 110202 to 110802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,963 DEBUG Processing 18/696 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:49,071 DEBUG Processing 12/724 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,089 DEBUG Processing 66/740 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,265 DEBUG Processing 19/696 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:49,297 DEBUG Processing 369/847 atomic regions from SNP 110502 to 111102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,367 DEBUG Processing 13/724 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,392 DEBUG Processing 67/740 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,568 DEBUG Processing 20/696 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:49,633 DEBUG Processing 370/847 atomic regions from SNP 110802 to 111402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,668 DEBUG Processing 14/724 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,696 DEBUG Processing 68/740 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,872 DEBUG Processing 21/696 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:49,951 DEBUG Processing 371/847 atomic regions from SNP 111102 to 111702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,966 DEBUG Processing 15/724 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,995 DEBUG Processing 69/740 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,201 DEBUG Processing 22/696 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:50,266 DEBUG Processing 16/724 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,268 DEBUG Processing 372/847 atomic regions from SNP 111402 to 112002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,292 DEBUG Processing 70/740 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,534 DEBUG Processing 23/696 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:50,568 DEBUG Processing 17/724 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,587 DEBUG Processing 373/847 atomic regions from SNP 111702 to 112302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,591 DEBUG Processing 71/740 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,856 DEBUG Processing 24/696 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:50,869 DEBUG Processing 18/724 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,892 DEBUG Processing 72/740 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,907 DEBUG Processing 374/847 atomic regions from SNP 112002 to 112602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,172 DEBUG Processing 19/724 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,184 DEBUG Processing 25/696 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:51,193 DEBUG Processing 73/740 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,225 DEBUG Processing 375/847 atomic regions from SNP 112302 to 112902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,475 DEBUG Processing 20/724 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,487 DEBUG Processing 26/696 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:51,495 DEBUG Processing 74/740 atomic regions from SNP 21973 to 22574 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,541 DEBUG Processing 376/847 atomic regions from SNP 112602 to 113202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,776 DEBUG Processing 21/724 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,788 DEBUG Processing 27/696 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:51,794 DEBUG Processing 75/740 atomic regions from SNP 22274 to 22875 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,854 DEBUG Processing 377/847 atomic regions from SNP 112902 to 113502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,075 DEBUG Processing 22/724 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,093 DEBUG Processing 76/740 atomic regions from SNP 22575 to 23176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,106 DEBUG Processing 28/696 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:52,165 DEBUG Processing 378/847 atomic regions from SNP 113202 to 113802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,374 DEBUG Processing 23/724 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,392 DEBUG Processing 77/740 atomic regions from SNP 22876 to 23477 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,432 DEBUG Processing 29/696 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:52,475 DEBUG Processing 379/847 atomic regions from SNP 113502 to 114102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,671 DEBUG Processing 24/724 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,693 DEBUG Processing 78/740 atomic regions from SNP 23177 to 23778 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,758 DEBUG Processing 30/696 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:52,787 DEBUG Processing 380/847 atomic regions from SNP 113802 to 114402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,967 DEBUG Processing 25/724 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,990 DEBUG Processing 79/740 atomic regions from SNP 23478 to 24079 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,084 DEBUG Processing 31/696 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:53,103 DEBUG Processing 381/847 atomic regions from SNP 114102 to 114702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,264 DEBUG Processing 26/724 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,285 DEBUG Processing 80/740 atomic regions from SNP 23779 to 24380 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,417 DEBUG Processing 382/847 atomic regions from SNP 114402 to 115002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,419 DEBUG Processing 32/696 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:53,561 DEBUG Processing 27/724 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,580 DEBUG Processing 81/740 atomic regions from SNP 24080 to 24681 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,731 DEBUG Processing 383/847 atomic regions from SNP 114702 to 115302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,753 DEBUG Processing 33/696 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:53,860 DEBUG Processing 28/724 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,879 DEBUG Processing 82/740 atomic regions from SNP 24381 to 24982 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,047 DEBUG Processing 384/847 atomic regions from SNP 115002 to 115602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,085 DEBUG Processing 34/696 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:54,159 DEBUG Processing 29/724 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,184 DEBUG Processing 83/740 atomic regions from SNP 24682 to 25283 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,361 DEBUG Processing 385/847 atomic regions from SNP 115302 to 115902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,417 DEBUG Processing 35/696 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:54,457 DEBUG Processing 30/724 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,486 DEBUG Processing 84/740 atomic regions from SNP 24983 to 25584 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,675 DEBUG Processing 386/847 atomic regions from SNP 115602 to 116202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,721 DEBUG Processing 36/696 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:54,756 DEBUG Processing 31/724 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,784 DEBUG Processing 85/740 atomic regions from SNP 25284 to 25885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,021 DEBUG Processing 387/847 atomic regions from SNP 115902 to 116502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,023 DEBUG Processing 37/696 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:55,065 DEBUG Processing 32/724 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,084 DEBUG Processing 86/740 atomic regions from SNP 25585 to 26186 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,331 DEBUG Processing 38/696 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:55,362 DEBUG Processing 388/847 atomic regions from SNP 116202 to 116802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,367 DEBUG Processing 33/724 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,387 DEBUG Processing 87/740 atomic regions from SNP 25886 to 26487 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,650 DEBUG Processing 39/696 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:55,671 DEBUG Processing 34/724 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,682 DEBUG Processing 389/847 atomic regions from SNP 116502 to 117102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,695 DEBUG Processing 88/740 atomic regions from SNP 26187 to 26788 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,972 DEBUG Processing 35/724 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,987 DEBUG Processing 40/696 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:56,000 DEBUG Processing 89/740 atomic regions from SNP 26488 to 27089 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,008 DEBUG Processing 390/847 atomic regions from SNP 116802 to 117402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,275 DEBUG Processing 36/724 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,308 DEBUG Processing 90/740 atomic regions from SNP 26789 to 27390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,325 DEBUG Processing 41/696 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:56,350 DEBUG Processing 391/847 atomic regions from SNP 117102 to 117702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,573 DEBUG Processing 37/724 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,612 DEBUG Processing 91/740 atomic regions from SNP 27090 to 27691 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,655 DEBUG Processing 42/696 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:56,684 DEBUG Processing 392/847 atomic regions from SNP 117402 to 118002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,866 DEBUG Processing 38/724 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,914 DEBUG Processing 92/740 atomic regions from SNP 27391 to 27992 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,992 DEBUG Processing 43/696 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:57,013 DEBUG Processing 393/847 atomic regions from SNP 117702 to 118302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,163 DEBUG Processing 39/724 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,214 DEBUG Processing 93/740 atomic regions from SNP 27692 to 28293 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,315 DEBUG Processing 44/696 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:57,343 DEBUG Processing 394/847 atomic regions from SNP 118002 to 118602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,460 DEBUG Processing 40/724 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,514 DEBUG Processing 94/740 atomic regions from SNP 27993 to 28594 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,615 DEBUG Processing 45/696 atomic regions from SNP 13244 to 13845 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:57,669 DEBUG Processing 395/847 atomic regions from SNP 118302 to 118902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,753 DEBUG Processing 41/724 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,815 DEBUG Processing 95/740 atomic regions from SNP 28294 to 28895 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,914 DEBUG Processing 46/696 atomic regions from SNP 13545 to 14146 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:58,006 DEBUG Processing 396/847 atomic regions from SNP 118602 to 119202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,044 DEBUG Processing 42/724 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,114 DEBUG Processing 96/740 atomic regions from SNP 28595 to 29196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,214 DEBUG Processing 47/696 atomic regions from SNP 13846 to 14447 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:58,347 DEBUG Processing 43/724 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,361 DEBUG Processing 397/847 atomic regions from SNP 118902 to 119502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,415 DEBUG Processing 97/740 atomic regions from SNP 28896 to 29497 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,514 DEBUG Processing 48/696 atomic regions from SNP 14147 to 14748 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:58,646 DEBUG Processing 44/724 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,714 DEBUG Processing 398/847 atomic regions from SNP 119202 to 119802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,728 DEBUG Processing 98/740 atomic regions from SNP 29197 to 29798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,809 DEBUG Processing 49/696 atomic regions from SNP 14448 to 15049 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:58,968 DEBUG Processing 45/724 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,037 DEBUG Processing 99/740 atomic regions from SNP 29498 to 30099 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,050 DEBUG Processing 399/847 atomic regions from SNP 119502 to 120102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,105 DEBUG Processing 50/696 atomic regions from SNP 14749 to 15350 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:59,278 DEBUG Processing 46/724 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,366 DEBUG Processing 400/847 atomic regions from SNP 119802 to 120402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,367 DEBUG Processing 100/740 atomic regions from SNP 29799 to 30400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,403 DEBUG Processing 51/696 atomic regions from SNP 15050 to 15651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:59,572 DEBUG Processing 47/724 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,695 DEBUG Processing 101/740 atomic regions from SNP 30100 to 30701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,698 DEBUG Processing 401/847 atomic regions from SNP 120102 to 120702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,710 DEBUG Processing 52/696 atomic regions from SNP 15351 to 15952 for chr7 (subchromosome 4 of 4). 2025-01-31 09:50:59,893 DEBUG Processing 48/724 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,008 DEBUG Processing 102/740 atomic regions from SNP 30401 to 31002 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,017 DEBUG Processing 402/847 atomic regions from SNP 120402 to 121002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,022 DEBUG Processing 53/696 atomic regions from SNP 15652 to 16253 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:00,225 DEBUG Processing 49/724 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,321 DEBUG Processing 103/740 atomic regions from SNP 30702 to 31303 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,335 DEBUG Processing 54/696 atomic regions from SNP 15953 to 16554 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:00,335 DEBUG Processing 403/847 atomic regions from SNP 120702 to 121302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,530 DEBUG Processing 50/724 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,632 DEBUG Processing 104/740 atomic regions from SNP 31003 to 31604 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,652 DEBUG Processing 55/696 atomic regions from SNP 16254 to 16855 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:00,653 DEBUG Processing 404/847 atomic regions from SNP 121002 to 121602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,825 DEBUG Processing 51/724 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,943 DEBUG Processing 105/740 atomic regions from SNP 31304 to 31905 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,965 DEBUG Processing 56/696 atomic regions from SNP 16555 to 17156 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:00,972 DEBUG Processing 405/847 atomic regions from SNP 121302 to 121902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,122 DEBUG Processing 52/724 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,257 DEBUG Processing 106/740 atomic regions from SNP 31605 to 32206 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,281 DEBUG Processing 57/696 atomic regions from SNP 16856 to 17457 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:01,292 DEBUG Processing 406/847 atomic regions from SNP 121602 to 122202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,422 DEBUG Processing 53/724 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,570 DEBUG Processing 107/740 atomic regions from SNP 31906 to 32507 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,595 DEBUG Processing 58/696 atomic regions from SNP 17157 to 17758 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:01,608 DEBUG Processing 407/847 atomic regions from SNP 121902 to 122502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,718 DEBUG Processing 54/724 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,883 DEBUG Processing 108/740 atomic regions from SNP 32207 to 32808 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,907 DEBUG Processing 59/696 atomic regions from SNP 17458 to 18059 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:01,924 DEBUG Processing 408/847 atomic regions from SNP 122202 to 122802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,011 DEBUG Processing 55/724 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,193 DEBUG Processing 109/740 atomic regions from SNP 32508 to 33109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,218 DEBUG Processing 60/696 atomic regions from SNP 17759 to 18360 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:02,239 DEBUG Processing 409/847 atomic regions from SNP 122502 to 123102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,303 DEBUG Processing 56/724 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,503 DEBUG Processing 110/740 atomic regions from SNP 32809 to 33410 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,555 DEBUG Processing 61/696 atomic regions from SNP 18060 to 18661 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:02,557 DEBUG Processing 410/847 atomic regions from SNP 122802 to 123402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,600 DEBUG Processing 57/724 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,813 DEBUG Processing 111/740 atomic regions from SNP 33110 to 33711 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,879 DEBUG Processing 411/847 atomic regions from SNP 123102 to 123702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,892 DEBUG Processing 62/696 atomic regions from SNP 18361 to 18962 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:02,913 DEBUG Processing 58/724 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,119 DEBUG Processing 112/740 atomic regions from SNP 33411 to 34012 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,196 DEBUG Processing 412/847 atomic regions from SNP 123402 to 124002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,224 DEBUG Processing 63/696 atomic regions from SNP 18662 to 19263 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:03,245 DEBUG Processing 59/724 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,427 DEBUG Processing 113/740 atomic regions from SNP 33712 to 34313 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,515 DEBUG Processing 413/847 atomic regions from SNP 123702 to 124302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,534 DEBUG Processing 64/696 atomic regions from SNP 18963 to 19564 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:03,572 DEBUG Processing 60/724 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,735 DEBUG Processing 114/740 atomic regions from SNP 34013 to 34614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,835 DEBUG Processing 414/847 atomic regions from SNP 124002 to 124602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,846 DEBUG Processing 65/696 atomic regions from SNP 19264 to 19865 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:03,869 DEBUG Processing 61/724 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,041 DEBUG Processing 115/740 atomic regions from SNP 34314 to 34915 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,154 DEBUG Processing 415/847 atomic regions from SNP 124302 to 124902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,157 DEBUG Processing 66/696 atomic regions from SNP 19565 to 20166 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:04,171 DEBUG Processing 62/724 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,347 DEBUG Processing 116/740 atomic regions from SNP 34615 to 35216 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,470 DEBUG Processing 67/696 atomic regions from SNP 19866 to 20467 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:04,474 DEBUG Processing 63/724 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,476 DEBUG Processing 416/847 atomic regions from SNP 124602 to 125202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,651 DEBUG Processing 117/740 atomic regions from SNP 34916 to 35517 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,781 DEBUG Processing 64/724 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,785 DEBUG Processing 68/696 atomic regions from SNP 20167 to 20768 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:04,800 DEBUG Processing 417/847 atomic regions from SNP 124902 to 125502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,961 DEBUG Processing 118/740 atomic regions from SNP 35217 to 35818 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,090 DEBUG Processing 65/724 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,099 DEBUG Processing 69/696 atomic regions from SNP 20468 to 21069 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:05,122 DEBUG Processing 418/847 atomic regions from SNP 125202 to 125802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,268 DEBUG Processing 119/740 atomic regions from SNP 35518 to 36119 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,394 DEBUG Processing 66/724 atomic regions from SNP 19565 to 20166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,412 DEBUG Processing 70/696 atomic regions from SNP 20769 to 21370 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:05,442 DEBUG Processing 419/847 atomic regions from SNP 125502 to 126102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,573 DEBUG Processing 120/740 atomic regions from SNP 35819 to 36420 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,698 DEBUG Processing 67/724 atomic regions from SNP 19866 to 20467 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,716 DEBUG Processing 71/696 atomic regions from SNP 21070 to 21671 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:05,760 DEBUG Processing 420/847 atomic regions from SNP 125802 to 126402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,869 DEBUG Processing 121/740 atomic regions from SNP 36120 to 36721 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,998 DEBUG Processing 68/724 atomic regions from SNP 20167 to 20768 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,015 DEBUG Processing 72/696 atomic regions from SNP 21371 to 21972 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:06,074 DEBUG Processing 421/847 atomic regions from SNP 126102 to 126702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,165 DEBUG Processing 122/740 atomic regions from SNP 36421 to 37022 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,313 DEBUG Processing 73/696 atomic regions from SNP 21672 to 22273 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:06,318 DEBUG Processing 69/724 atomic regions from SNP 20468 to 21069 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,389 DEBUG Processing 422/847 atomic regions from SNP 126402 to 127002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,465 DEBUG Processing 123/740 atomic regions from SNP 36722 to 37323 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,620 DEBUG Processing 74/696 atomic regions from SNP 21973 to 22574 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:06,642 DEBUG Processing 70/724 atomic regions from SNP 20769 to 21370 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,701 DEBUG Processing 423/847 atomic regions from SNP 126702 to 127302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,766 DEBUG Processing 124/740 atomic regions from SNP 37023 to 37624 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,922 DEBUG Processing 75/696 atomic regions from SNP 22274 to 22875 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:06,941 DEBUG Processing 71/724 atomic regions from SNP 21070 to 21671 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,013 DEBUG Processing 424/847 atomic regions from SNP 127002 to 127602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,068 DEBUG Processing 125/740 atomic regions from SNP 37324 to 37925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,221 DEBUG Processing 76/696 atomic regions from SNP 22575 to 23176 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:07,248 DEBUG Processing 72/724 atomic regions from SNP 21371 to 21972 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,333 DEBUG Processing 425/847 atomic regions from SNP 127302 to 127902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,373 DEBUG Processing 126/740 atomic regions from SNP 37625 to 38226 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,522 DEBUG Processing 77/696 atomic regions from SNP 22876 to 23477 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:07,551 DEBUG Processing 73/724 atomic regions from SNP 21672 to 22273 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,649 DEBUG Processing 426/847 atomic regions from SNP 127602 to 128202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,671 DEBUG Processing 127/740 atomic regions from SNP 37926 to 38527 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,842 DEBUG Processing 78/696 atomic regions from SNP 23177 to 23778 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:07,847 DEBUG Processing 74/724 atomic regions from SNP 21973 to 22574 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,963 DEBUG Processing 427/847 atomic regions from SNP 127902 to 128502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,977 DEBUG Processing 128/740 atomic regions from SNP 38227 to 38828 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,147 DEBUG Processing 75/724 atomic regions from SNP 22274 to 22875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,172 DEBUG Processing 79/696 atomic regions from SNP 23478 to 24079 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:08,279 DEBUG Processing 129/740 atomic regions from SNP 38528 to 39129 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,282 DEBUG Processing 428/847 atomic regions from SNP 128202 to 128802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,449 DEBUG Processing 76/724 atomic regions from SNP 22575 to 23176 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,476 DEBUG Processing 80/696 atomic regions from SNP 23779 to 24380 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:08,585 DEBUG Processing 130/740 atomic regions from SNP 38829 to 39430 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,602 DEBUG Processing 429/847 atomic regions from SNP 128502 to 129102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,748 DEBUG Processing 77/724 atomic regions from SNP 22876 to 23477 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,781 DEBUG Processing 81/696 atomic regions from SNP 24080 to 24681 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:08,896 DEBUG Processing 131/740 atomic regions from SNP 39130 to 39731 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,919 DEBUG Processing 430/847 atomic regions from SNP 128802 to 129402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,050 DEBUG Processing 78/724 atomic regions from SNP 23177 to 23778 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,090 DEBUG Processing 82/696 atomic regions from SNP 24381 to 24982 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:09,205 DEBUG Processing 132/740 atomic regions from SNP 39431 to 40032 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,235 DEBUG Processing 431/847 atomic regions from SNP 129102 to 129702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,353 DEBUG Processing 79/724 atomic regions from SNP 23478 to 24079 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,392 DEBUG Processing 83/696 atomic regions from SNP 24682 to 25283 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:09,507 DEBUG Processing 133/740 atomic regions from SNP 39732 to 40333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,553 DEBUG Processing 432/847 atomic regions from SNP 129402 to 130002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,656 DEBUG Processing 80/724 atomic regions from SNP 23779 to 24380 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,692 DEBUG Processing 84/696 atomic regions from SNP 24983 to 25584 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:09,811 DEBUG Processing 134/740 atomic regions from SNP 40033 to 40634 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,867 DEBUG Processing 433/847 atomic regions from SNP 129702 to 130302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,956 DEBUG Processing 81/724 atomic regions from SNP 24080 to 24681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,995 DEBUG Processing 85/696 atomic regions from SNP 25284 to 25885 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:10,115 DEBUG Processing 135/740 atomic regions from SNP 40334 to 40935 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,181 DEBUG Processing 434/847 atomic regions from SNP 130002 to 130602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,251 DEBUG Processing 82/724 atomic regions from SNP 24381 to 24982 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,299 DEBUG Processing 86/696 atomic regions from SNP 25585 to 26186 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:10,420 DEBUG Processing 136/740 atomic regions from SNP 40635 to 41236 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,494 DEBUG Processing 435/847 atomic regions from SNP 130302 to 130902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,546 DEBUG Processing 83/724 atomic regions from SNP 24682 to 25283 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,602 DEBUG Processing 87/696 atomic regions from SNP 25886 to 26487 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:10,726 DEBUG Processing 137/740 atomic regions from SNP 40936 to 41537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,810 DEBUG Processing 436/847 atomic regions from SNP 130602 to 131202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,840 DEBUG Processing 84/724 atomic regions from SNP 24983 to 25584 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,903 DEBUG Processing 88/696 atomic regions from SNP 26187 to 26788 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:11,029 DEBUG Processing 138/740 atomic regions from SNP 41237 to 41838 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,123 DEBUG Processing 437/847 atomic regions from SNP 130902 to 131502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,138 DEBUG Processing 85/724 atomic regions from SNP 25284 to 25885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,203 DEBUG Processing 89/696 atomic regions from SNP 26488 to 27089 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:11,330 DEBUG Processing 139/740 atomic regions from SNP 41538 to 42139 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,436 DEBUG Processing 86/724 atomic regions from SNP 25585 to 26186 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,438 DEBUG Processing 438/847 atomic regions from SNP 131202 to 131802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,505 DEBUG Processing 90/696 atomic regions from SNP 26789 to 27390 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:11,631 DEBUG Processing 140/740 atomic regions from SNP 41839 to 42440 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,739 DEBUG Processing 87/724 atomic regions from SNP 25886 to 26487 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,758 DEBUG Processing 439/847 atomic regions from SNP 131502 to 132102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,811 DEBUG Processing 91/696 atomic regions from SNP 27090 to 27691 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:11,936 DEBUG Processing 141/740 atomic regions from SNP 42140 to 42741 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,039 DEBUG Processing 88/724 atomic regions from SNP 26187 to 26788 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,076 DEBUG Processing 440/847 atomic regions from SNP 131802 to 132402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,114 DEBUG Processing 92/696 atomic regions from SNP 27391 to 27992 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:12,239 DEBUG Processing 142/740 atomic regions from SNP 42441 to 43042 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,342 DEBUG Processing 89/724 atomic regions from SNP 26488 to 27089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,392 DEBUG Processing 441/847 atomic regions from SNP 132102 to 132702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,417 DEBUG Processing 93/696 atomic regions from SNP 27692 to 28293 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:12,543 DEBUG Processing 143/740 atomic regions from SNP 42742 to 43343 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,641 DEBUG Processing 90/724 atomic regions from SNP 26789 to 27390 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,705 DEBUG Processing 442/847 atomic regions from SNP 132402 to 133002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,722 DEBUG Processing 94/696 atomic regions from SNP 27993 to 28594 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:12,847 DEBUG Processing 144/740 atomic regions from SNP 43043 to 43644 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,940 DEBUG Processing 91/724 atomic regions from SNP 27090 to 27691 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,020 DEBUG Processing 443/847 atomic regions from SNP 132702 to 133302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,028 DEBUG Processing 95/696 atomic regions from SNP 28294 to 28895 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:13,150 DEBUG Processing 145/740 atomic regions from SNP 43344 to 43945 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,242 DEBUG Processing 92/724 atomic regions from SNP 27391 to 27992 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,333 DEBUG Processing 96/696 atomic regions from SNP 28595 to 29196 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:13,335 DEBUG Processing 444/847 atomic regions from SNP 133002 to 133602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,453 DEBUG Processing 146/740 atomic regions from SNP 43645 to 44246 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,538 DEBUG Processing 93/724 atomic regions from SNP 27692 to 28293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,640 DEBUG Processing 97/696 atomic regions from SNP 28896 to 29497 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:13,650 DEBUG Processing 445/847 atomic regions from SNP 133302 to 133902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,762 DEBUG Processing 147/740 atomic regions from SNP 43946 to 44547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,835 DEBUG Processing 94/724 atomic regions from SNP 27993 to 28594 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,950 DEBUG Processing 98/696 atomic regions from SNP 29197 to 29798 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:13,966 DEBUG Processing 446/847 atomic regions from SNP 133602 to 134202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,071 DEBUG Processing 148/740 atomic regions from SNP 44247 to 44848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,130 DEBUG Processing 95/724 atomic regions from SNP 28294 to 28895 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,257 DEBUG Processing 99/696 atomic regions from SNP 29498 to 30099 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:14,279 DEBUG Processing 447/847 atomic regions from SNP 133902 to 134502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,377 DEBUG Processing 149/740 atomic regions from SNP 44548 to 45149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,425 DEBUG Processing 96/724 atomic regions from SNP 28595 to 29196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,564 DEBUG Processing 100/696 atomic regions from SNP 29799 to 30400 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:14,592 DEBUG Processing 448/847 atomic regions from SNP 134202 to 134802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,682 DEBUG Processing 150/740 atomic regions from SNP 44849 to 45450 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,723 DEBUG Processing 97/724 atomic regions from SNP 28896 to 29497 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,869 DEBUG Processing 101/696 atomic regions from SNP 30100 to 30701 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:14,903 DEBUG Processing 449/847 atomic regions from SNP 134502 to 135102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,992 DEBUG Processing 151/740 atomic regions from SNP 45150 to 45751 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,023 DEBUG Processing 98/724 atomic regions from SNP 29197 to 29798 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,180 DEBUG Processing 102/696 atomic regions from SNP 30401 to 31002 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:15,217 DEBUG Processing 450/847 atomic regions from SNP 134802 to 135402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,304 DEBUG Processing 152/740 atomic regions from SNP 45451 to 46052 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,330 DEBUG Processing 99/724 atomic regions from SNP 29498 to 30099 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,495 DEBUG Processing 103/696 atomic regions from SNP 30702 to 31303 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:15,530 DEBUG Processing 451/847 atomic regions from SNP 135102 to 135702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,616 DEBUG Processing 153/740 atomic regions from SNP 45752 to 46353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,630 DEBUG Processing 100/724 atomic regions from SNP 29799 to 30400 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,796 DEBUG Processing 104/696 atomic regions from SNP 31003 to 31604 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:15,845 DEBUG Processing 452/847 atomic regions from SNP 135402 to 136002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,920 DEBUG Processing 154/740 atomic regions from SNP 46053 to 46654 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,940 DEBUG Processing 101/724 atomic regions from SNP 30100 to 30701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,104 DEBUG Processing 105/696 atomic regions from SNP 31304 to 31905 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:16,157 DEBUG Processing 453/847 atomic regions from SNP 135702 to 136302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,231 DEBUG Processing 155/740 atomic regions from SNP 46354 to 46955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,240 DEBUG Processing 102/724 atomic regions from SNP 30401 to 31002 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,411 DEBUG Processing 106/696 atomic regions from SNP 31605 to 32206 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:16,470 DEBUG Processing 454/847 atomic regions from SNP 136002 to 136602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,542 DEBUG Processing 156/740 atomic regions from SNP 46655 to 47256 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,544 DEBUG Processing 103/724 atomic regions from SNP 30702 to 31303 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,735 DEBUG Processing 107/696 atomic regions from SNP 31906 to 32507 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:16,783 DEBUG Processing 455/847 atomic regions from SNP 136302 to 136902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,842 DEBUG Processing 104/724 atomic regions from SNP 31003 to 31604 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,852 DEBUG Processing 157/740 atomic regions from SNP 46956 to 47557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,079 DEBUG Processing 108/696 atomic regions from SNP 32207 to 32808 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:17,099 DEBUG Processing 456/847 atomic regions from SNP 136602 to 137202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,144 DEBUG Processing 105/724 atomic regions from SNP 31304 to 31905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,162 DEBUG Processing 158/740 atomic regions from SNP 47257 to 47858 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,427 DEBUG Processing 109/696 atomic regions from SNP 32508 to 33109 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:17,446 DEBUG Processing 457/847 atomic regions from SNP 136902 to 137502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,468 DEBUG Processing 106/724 atomic regions from SNP 31605 to 32206 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,474 DEBUG Processing 159/740 atomic regions from SNP 47558 to 48159 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,768 DEBUG Processing 110/696 atomic regions from SNP 32809 to 33410 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:17,788 DEBUG Processing 160/740 atomic regions from SNP 47859 to 48460 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,805 DEBUG Processing 107/724 atomic regions from SNP 31906 to 32507 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,805 DEBUG Processing 458/847 atomic regions from SNP 137202 to 137802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,103 DEBUG Processing 161/740 atomic regions from SNP 48160 to 48761 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,114 DEBUG Processing 111/696 atomic regions from SNP 33110 to 33711 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:18,125 DEBUG Processing 108/724 atomic regions from SNP 32207 to 32808 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,157 DEBUG Processing 459/847 atomic regions from SNP 137502 to 138102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,414 DEBUG Processing 162/740 atomic regions from SNP 48461 to 49062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,428 DEBUG Processing 109/724 atomic regions from SNP 32508 to 33109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,461 DEBUG Processing 112/696 atomic regions from SNP 33411 to 34012 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:18,511 DEBUG Processing 460/847 atomic regions from SNP 137802 to 138402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,726 DEBUG Processing 163/740 atomic regions from SNP 48762 to 49363 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,728 DEBUG Processing 110/724 atomic regions from SNP 32809 to 33410 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,806 DEBUG Processing 113/696 atomic regions from SNP 33712 to 34313 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:18,839 DEBUG Processing 461/847 atomic regions from SNP 138102 to 138702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,028 DEBUG Processing 111/724 atomic regions from SNP 33110 to 33711 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,036 DEBUG Processing 164/740 atomic regions from SNP 49063 to 49664 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,152 DEBUG Processing 114/696 atomic regions from SNP 34013 to 34614 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:19,166 DEBUG Processing 462/847 atomic regions from SNP 138402 to 139002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,328 DEBUG Processing 112/724 atomic regions from SNP 33411 to 34012 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,341 DEBUG Processing 165/740 atomic regions from SNP 49364 to 49965 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,486 DEBUG Processing 463/847 atomic regions from SNP 138702 to 139302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,494 DEBUG Processing 115/696 atomic regions from SNP 34314 to 34915 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:19,628 DEBUG Processing 113/724 atomic regions from SNP 33712 to 34313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,652 DEBUG Processing 166/740 atomic regions from SNP 49665 to 50266 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,800 DEBUG Processing 464/847 atomic regions from SNP 139002 to 139602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,841 DEBUG Processing 116/696 atomic regions from SNP 34615 to 35216 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:19,926 DEBUG Processing 114/724 atomic regions from SNP 34013 to 34614 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,960 DEBUG Processing 167/740 atomic regions from SNP 49966 to 50567 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,112 DEBUG Processing 465/847 atomic regions from SNP 139302 to 139902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,183 DEBUG Processing 117/696 atomic regions from SNP 34916 to 35517 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:20,226 DEBUG Processing 115/724 atomic regions from SNP 34314 to 34915 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,262 DEBUG Processing 168/740 atomic regions from SNP 50267 to 50868 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,430 DEBUG Processing 466/847 atomic regions from SNP 139602 to 140202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,508 DEBUG Processing 118/696 atomic regions from SNP 35217 to 35818 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:20,526 DEBUG Processing 116/724 atomic regions from SNP 34615 to 35216 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,572 DEBUG Processing 169/740 atomic regions from SNP 50568 to 51169 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,747 DEBUG Processing 467/847 atomic regions from SNP 139902 to 140502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,822 DEBUG Processing 119/696 atomic regions from SNP 35518 to 36119 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:20,825 DEBUG Processing 117/724 atomic regions from SNP 34916 to 35517 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,878 DEBUG Processing 170/740 atomic regions from SNP 50869 to 51470 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,065 DEBUG Processing 468/847 atomic regions from SNP 140202 to 140802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,128 DEBUG Processing 118/724 atomic regions from SNP 35217 to 35818 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,134 DEBUG Processing 120/696 atomic regions from SNP 35819 to 36420 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:21,181 DEBUG Processing 171/740 atomic regions from SNP 51170 to 51771 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,381 DEBUG Processing 469/847 atomic regions from SNP 140502 to 141102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,428 DEBUG Processing 119/724 atomic regions from SNP 35518 to 36119 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,445 DEBUG Processing 121/696 atomic regions from SNP 36120 to 36721 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:21,488 DEBUG Processing 172/740 atomic regions from SNP 51471 to 52072 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,698 DEBUG Processing 470/847 atomic regions from SNP 140802 to 141402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,726 DEBUG Processing 120/724 atomic regions from SNP 35819 to 36420 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,755 DEBUG Processing 122/696 atomic regions from SNP 36421 to 37022 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:21,795 DEBUG Processing 173/740 atomic regions from SNP 51772 to 52373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,018 DEBUG Processing 471/847 atomic regions from SNP 141102 to 141702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,026 DEBUG Processing 121/724 atomic regions from SNP 36120 to 36721 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,083 DEBUG Processing 123/696 atomic regions from SNP 36722 to 37323 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:22,101 DEBUG Processing 174/740 atomic regions from SNP 52073 to 52674 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,359 DEBUG Processing 122/724 atomic regions from SNP 36421 to 37022 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,367 DEBUG Processing 472/847 atomic regions from SNP 141402 to 142002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,407 DEBUG Processing 175/740 atomic regions from SNP 52374 to 52975 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,416 DEBUG Processing 124/696 atomic regions from SNP 37023 to 37624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:22,689 DEBUG Processing 123/724 atomic regions from SNP 36722 to 37323 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,698 DEBUG Processing 473/847 atomic regions from SNP 141702 to 142302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,717 DEBUG Processing 176/740 atomic regions from SNP 52675 to 53276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,745 DEBUG Processing 125/696 atomic regions from SNP 37324 to 37925 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:23,008 DEBUG Processing 124/724 atomic regions from SNP 37023 to 37624 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,028 DEBUG Processing 177/740 atomic regions from SNP 52976 to 53577 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,032 DEBUG Processing 474/847 atomic regions from SNP 142002 to 142602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,054 DEBUG Processing 126/696 atomic regions from SNP 37625 to 38226 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:23,318 DEBUG Processing 125/724 atomic regions from SNP 37324 to 37925 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,344 DEBUG Processing 178/740 atomic regions from SNP 53277 to 53878 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,369 DEBUG Processing 127/696 atomic regions from SNP 37926 to 38527 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:23,380 DEBUG Processing 475/847 atomic regions from SNP 142302 to 142902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,618 DEBUG Processing 126/724 atomic regions from SNP 37625 to 38226 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,658 DEBUG Processing 179/740 atomic regions from SNP 53578 to 54179 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,681 DEBUG Processing 128/696 atomic regions from SNP 38227 to 38828 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:23,718 DEBUG Processing 476/847 atomic regions from SNP 142602 to 143202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,915 DEBUG Processing 127/724 atomic regions from SNP 37926 to 38527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,968 DEBUG Processing 180/740 atomic regions from SNP 53879 to 54480 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,993 DEBUG Processing 129/696 atomic regions from SNP 38528 to 39129 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:24,048 DEBUG Processing 477/847 atomic regions from SNP 142902 to 143502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,207 DEBUG Processing 128/724 atomic regions from SNP 38227 to 38828 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,278 DEBUG Processing 181/740 atomic regions from SNP 54180 to 54781 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,304 DEBUG Processing 130/696 atomic regions from SNP 38829 to 39430 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:24,398 DEBUG Processing 478/847 atomic regions from SNP 143202 to 143802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,505 DEBUG Processing 129/724 atomic regions from SNP 38528 to 39129 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,588 DEBUG Processing 182/740 atomic regions from SNP 54481 to 55082 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,615 DEBUG Processing 131/696 atomic regions from SNP 39130 to 39731 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:24,754 DEBUG Processing 479/847 atomic regions from SNP 143502 to 144102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,803 DEBUG Processing 130/724 atomic regions from SNP 38829 to 39430 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,898 DEBUG Processing 183/740 atomic regions from SNP 54782 to 55383 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,924 DEBUG Processing 132/696 atomic regions from SNP 39431 to 40032 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:25,104 DEBUG Processing 480/847 atomic regions from SNP 143802 to 144402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,134 DEBUG Processing 131/724 atomic regions from SNP 39130 to 39731 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,207 DEBUG Processing 184/740 atomic regions from SNP 55083 to 55684 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,234 DEBUG Processing 133/696 atomic regions from SNP 39732 to 40333 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:25,436 DEBUG Processing 481/847 atomic regions from SNP 144102 to 144702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,469 DEBUG Processing 132/724 atomic regions from SNP 39431 to 40032 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,516 DEBUG Processing 185/740 atomic regions from SNP 55384 to 55985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,547 DEBUG Processing 134/696 atomic regions from SNP 40033 to 40634 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:25,774 DEBUG Processing 482/847 atomic regions from SNP 144402 to 145002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,789 DEBUG Processing 133/724 atomic regions from SNP 39732 to 40333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,827 DEBUG Processing 186/740 atomic regions from SNP 55685 to 56286 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,872 DEBUG Processing 135/696 atomic regions from SNP 40334 to 40935 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:26,090 DEBUG Processing 134/724 atomic regions from SNP 40033 to 40634 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,109 DEBUG Processing 483/847 atomic regions from SNP 144702 to 145302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,135 DEBUG Processing 187/740 atomic regions from SNP 55986 to 56587 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,182 DEBUG Processing 136/696 atomic regions from SNP 40635 to 41236 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:26,390 DEBUG Processing 135/724 atomic regions from SNP 40334 to 40935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,429 DEBUG Processing 484/847 atomic regions from SNP 145002 to 145602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,448 DEBUG Processing 188/740 atomic regions from SNP 56287 to 56888 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,490 DEBUG Processing 137/696 atomic regions from SNP 40936 to 41537 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:26,690 DEBUG Processing 136/724 atomic regions from SNP 40635 to 41236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,755 DEBUG Processing 485/847 atomic regions from SNP 145302 to 145902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,758 DEBUG Processing 189/740 atomic regions from SNP 56588 to 57189 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,798 DEBUG Processing 138/696 atomic regions from SNP 41237 to 41838 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:26,987 DEBUG Processing 137/724 atomic regions from SNP 40936 to 41537 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,073 DEBUG Processing 190/740 atomic regions from SNP 56889 to 57490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,108 DEBUG Processing 139/696 atomic regions from SNP 41538 to 42139 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:27,108 DEBUG Processing 486/847 atomic regions from SNP 145602 to 146202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,285 DEBUG Processing 138/724 atomic regions from SNP 41237 to 41838 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,384 DEBUG Processing 191/740 atomic regions from SNP 57190 to 57791 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,419 DEBUG Processing 140/696 atomic regions from SNP 41839 to 42440 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:27,458 DEBUG Processing 487/847 atomic regions from SNP 145902 to 146502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,581 DEBUG Processing 139/724 atomic regions from SNP 41538 to 42139 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,696 DEBUG Processing 192/740 atomic regions from SNP 57491 to 58092 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,731 DEBUG Processing 141/696 atomic regions from SNP 42140 to 42741 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:27,795 DEBUG Processing 488/847 atomic regions from SNP 146202 to 146802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,874 DEBUG Processing 140/724 atomic regions from SNP 41839 to 42440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,007 DEBUG Processing 193/740 atomic regions from SNP 57792 to 58393 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,040 DEBUG Processing 142/696 atomic regions from SNP 42441 to 43042 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:28,132 DEBUG Processing 489/847 atomic regions from SNP 146502 to 147102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,169 DEBUG Processing 141/724 atomic regions from SNP 42140 to 42741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,318 DEBUG Processing 194/740 atomic regions from SNP 58093 to 58694 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,350 DEBUG Processing 143/696 atomic regions from SNP 42742 to 43343 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:28,458 DEBUG Processing 490/847 atomic regions from SNP 146802 to 147402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,470 DEBUG Processing 142/724 atomic regions from SNP 42441 to 43042 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,627 DEBUG Processing 195/740 atomic regions from SNP 58394 to 58995 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,658 DEBUG Processing 144/696 atomic regions from SNP 43043 to 43644 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:28,773 DEBUG Processing 143/724 atomic regions from SNP 42742 to 43343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,797 DEBUG Processing 491/847 atomic regions from SNP 147102 to 147702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,938 DEBUG Processing 196/740 atomic regions from SNP 58695 to 59296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,967 DEBUG Processing 145/696 atomic regions from SNP 43344 to 43945 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:29,075 DEBUG Processing 144/724 atomic regions from SNP 43043 to 43644 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,141 DEBUG Processing 492/847 atomic regions from SNP 147402 to 148002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,248 DEBUG Processing 197/740 atomic regions from SNP 58996 to 59597 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,277 DEBUG Processing 146/696 atomic regions from SNP 43645 to 44246 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:29,377 DEBUG Processing 145/724 atomic regions from SNP 43344 to 43945 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,497 DEBUG Processing 493/847 atomic regions from SNP 147702 to 148302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,560 DEBUG Processing 198/740 atomic regions from SNP 59297 to 59898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,586 DEBUG Processing 147/696 atomic regions from SNP 43946 to 44547 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:29,671 DEBUG Processing 146/724 atomic regions from SNP 43645 to 44246 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,843 DEBUG Processing 494/847 atomic regions from SNP 148002 to 148602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,871 DEBUG Processing 199/740 atomic regions from SNP 59598 to 60199 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,898 DEBUG Processing 148/696 atomic regions from SNP 44247 to 44848 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:29,968 DEBUG Processing 147/724 atomic regions from SNP 43946 to 44547 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,160 DEBUG Processing 495/847 atomic regions from SNP 148302 to 148902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,174 DEBUG Processing 200/740 atomic regions from SNP 59899 to 60500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,202 DEBUG Processing 149/696 atomic regions from SNP 44548 to 45149 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:30,267 DEBUG Processing 148/724 atomic regions from SNP 44247 to 44848 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,489 DEBUG Processing 201/740 atomic regions from SNP 60200 to 60801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,503 DEBUG Processing 496/847 atomic regions from SNP 148602 to 149202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,514 DEBUG Processing 150/696 atomic regions from SNP 44849 to 45450 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:30,564 DEBUG Processing 149/724 atomic regions from SNP 44548 to 45149 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,800 DEBUG Processing 202/740 atomic regions from SNP 60501 to 61102 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,826 DEBUG Processing 151/696 atomic regions from SNP 45150 to 45751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:30,842 DEBUG Processing 497/847 atomic regions from SNP 148902 to 149502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,860 DEBUG Processing 150/724 atomic regions from SNP 44849 to 45450 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,109 DEBUG Processing 203/740 atomic regions from SNP 60802 to 61403 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,139 DEBUG Processing 152/696 atomic regions from SNP 45451 to 46052 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:31,165 DEBUG Processing 151/724 atomic regions from SNP 45150 to 45751 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,187 DEBUG Processing 498/847 atomic regions from SNP 149202 to 149802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,420 DEBUG Processing 204/740 atomic regions from SNP 61103 to 61704 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,451 DEBUG Processing 153/696 atomic regions from SNP 45752 to 46353 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:31,467 DEBUG Processing 152/724 atomic regions from SNP 45451 to 46052 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,513 DEBUG Processing 499/847 atomic regions from SNP 149502 to 150102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,729 DEBUG Processing 205/740 atomic regions from SNP 61404 to 62005 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,761 DEBUG Processing 154/696 atomic regions from SNP 46053 to 46654 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:31,771 DEBUG Processing 153/724 atomic regions from SNP 45752 to 46353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,827 DEBUG Processing 500/847 atomic regions from SNP 149802 to 150402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,031 DEBUG Processing 206/740 atomic regions from SNP 61705 to 62306 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,065 DEBUG Processing 155/696 atomic regions from SNP 46354 to 46955 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:32,070 DEBUG Processing 154/724 atomic regions from SNP 46053 to 46654 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,136 DEBUG Processing 501/847 atomic regions from SNP 150102 to 150702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,335 DEBUG Processing 207/740 atomic regions from SNP 62006 to 62607 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,372 DEBUG Processing 155/724 atomic regions from SNP 46354 to 46955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,372 DEBUG Processing 156/696 atomic regions from SNP 46655 to 47256 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:32,447 DEBUG Processing 502/847 atomic regions from SNP 150402 to 151002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,639 DEBUG Processing 208/740 atomic regions from SNP 62307 to 62908 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,674 DEBUG Processing 156/724 atomic regions from SNP 46655 to 47256 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,679 DEBUG Processing 157/696 atomic regions from SNP 46956 to 47557 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:32,788 DEBUG Processing 503/847 atomic regions from SNP 150702 to 151302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,945 DEBUG Processing 209/740 atomic regions from SNP 62608 to 63209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,974 DEBUG Processing 157/724 atomic regions from SNP 46956 to 47557 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,983 DEBUG Processing 158/696 atomic regions from SNP 47257 to 47858 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:33,139 DEBUG Processing 504/847 atomic regions from SNP 151002 to 151602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,250 DEBUG Processing 210/740 atomic regions from SNP 62909 to 63510 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,275 DEBUG Processing 158/724 atomic regions from SNP 47257 to 47858 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,289 DEBUG Processing 159/696 atomic regions from SNP 47558 to 48159 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:33,472 DEBUG Processing 505/847 atomic regions from SNP 151302 to 151902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,561 DEBUG Processing 211/740 atomic regions from SNP 63210 to 63811 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,577 DEBUG Processing 159/724 atomic regions from SNP 47558 to 48159 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,599 DEBUG Processing 160/696 atomic regions from SNP 47859 to 48460 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:33,818 DEBUG Processing 506/847 atomic regions from SNP 151602 to 152202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,880 DEBUG Processing 160/724 atomic regions from SNP 47859 to 48460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,889 DEBUG Processing 212/740 atomic regions from SNP 63511 to 64112 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,907 DEBUG Processing 161/696 atomic regions from SNP 48160 to 48761 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:34,159 DEBUG Processing 507/847 atomic regions from SNP 151902 to 152502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,181 DEBUG Processing 161/724 atomic regions from SNP 48160 to 48760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,201 DEBUG Processing 213/740 atomic regions from SNP 63812 to 64413 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,217 DEBUG Processing 162/696 atomic regions from SNP 48461 to 49062 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:34,486 DEBUG Processing 162/724 atomic regions from SNP 48460 to 49060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,490 DEBUG Processing 508/847 atomic regions from SNP 152202 to 152802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,523 DEBUG Processing 214/740 atomic regions from SNP 64113 to 64714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,528 DEBUG Processing 163/696 atomic regions from SNP 48762 to 49363 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:34,788 DEBUG Processing 163/724 atomic regions from SNP 48760 to 49360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,832 DEBUG Processing 164/696 atomic regions from SNP 49063 to 49664 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:34,834 DEBUG Processing 509/847 atomic regions from SNP 152502 to 153102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,859 DEBUG Processing 215/740 atomic regions from SNP 64414 to 65015 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,085 DEBUG Processing 164/724 atomic regions from SNP 49060 to 49660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,139 DEBUG Processing 165/696 atomic regions from SNP 49364 to 49965 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:35,157 DEBUG Processing 510/847 atomic regions from SNP 152802 to 153402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,193 DEBUG Processing 216/740 atomic regions from SNP 64715 to 65316 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,381 DEBUG Processing 165/724 atomic regions from SNP 49360 to 49960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,448 DEBUG Processing 166/696 atomic regions from SNP 49665 to 50266 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:35,482 DEBUG Processing 511/847 atomic regions from SNP 153102 to 153702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,499 DEBUG Processing 217/740 atomic regions from SNP 65016 to 65617 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,677 DEBUG Processing 166/724 atomic regions from SNP 49660 to 50260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,755 DEBUG Processing 167/696 atomic regions from SNP 49966 to 50567 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:35,805 DEBUG Processing 218/740 atomic regions from SNP 65317 to 65918 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,814 DEBUG Processing 512/847 atomic regions from SNP 153402 to 154002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,974 DEBUG Processing 167/724 atomic regions from SNP 49960 to 50560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,060 DEBUG Processing 168/696 atomic regions from SNP 50267 to 50868 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:36,111 DEBUG Processing 219/740 atomic regions from SNP 65618 to 66219 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,157 DEBUG Processing 513/847 atomic regions from SNP 153702 to 154302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,273 DEBUG Processing 168/724 atomic regions from SNP 50260 to 50860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,361 DEBUG Processing 169/696 atomic regions from SNP 50568 to 51169 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:36,409 DEBUG Processing 220/740 atomic regions from SNP 65919 to 66520 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,470 DEBUG Processing 514/847 atomic regions from SNP 154002 to 154602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,583 DEBUG Processing 169/724 atomic regions from SNP 50560 to 51160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,665 DEBUG Processing 170/696 atomic regions from SNP 50869 to 51470 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:36,712 DEBUG Processing 221/740 atomic regions from SNP 66220 to 66821 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,782 DEBUG Processing 515/847 atomic regions from SNP 154302 to 154902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,897 DEBUG Processing 170/724 atomic regions from SNP 50860 to 51460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,969 DEBUG Processing 171/696 atomic regions from SNP 51170 to 51771 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:37,029 DEBUG Processing 222/740 atomic regions from SNP 66521 to 67122 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,095 DEBUG Processing 516/847 atomic regions from SNP 154602 to 155202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,217 DEBUG Processing 171/724 atomic regions from SNP 51160 to 51760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,275 DEBUG Processing 172/696 atomic regions from SNP 51471 to 52072 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:37,360 DEBUG Processing 223/740 atomic regions from SNP 66822 to 67423 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,407 DEBUG Processing 517/847 atomic regions from SNP 154902 to 155502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,515 DEBUG Processing 172/724 atomic regions from SNP 51460 to 52060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,595 DEBUG Processing 173/696 atomic regions from SNP 51772 to 52373 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:37,664 DEBUG Processing 224/740 atomic regions from SNP 67123 to 67724 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,720 DEBUG Processing 518/847 atomic regions from SNP 155202 to 155802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,812 DEBUG Processing 173/724 atomic regions from SNP 51760 to 52360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,902 DEBUG Processing 174/696 atomic regions from SNP 52073 to 52674 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:37,978 DEBUG Processing 225/740 atomic regions from SNP 67424 to 68025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,033 DEBUG Processing 519/847 atomic regions from SNP 155502 to 156102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,104 DEBUG Processing 174/724 atomic regions from SNP 52060 to 52660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,205 DEBUG Processing 175/696 atomic regions from SNP 52374 to 52975 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:38,303 DEBUG Processing 226/740 atomic regions from SNP 67725 to 68326 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,349 DEBUG Processing 520/847 atomic regions from SNP 155802 to 156402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,399 DEBUG Processing 175/724 atomic regions from SNP 52360 to 52960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,508 DEBUG Processing 176/696 atomic regions from SNP 52675 to 53276 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:38,632 DEBUG Processing 227/740 atomic regions from SNP 68026 to 68627 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,667 DEBUG Processing 521/847 atomic regions from SNP 156102 to 156702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,694 DEBUG Processing 176/724 atomic regions from SNP 52660 to 53260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,808 DEBUG Processing 177/696 atomic regions from SNP 52976 to 53577 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:38,968 DEBUG Processing 228/740 atomic regions from SNP 68327 to 68928 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,986 DEBUG Processing 522/847 atomic regions from SNP 156402 to 157002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,992 DEBUG Processing 177/724 atomic regions from SNP 52960 to 53560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,108 DEBUG Processing 178/696 atomic regions from SNP 53277 to 53878 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:39,293 DEBUG Processing 178/724 atomic regions from SNP 53260 to 53860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,301 DEBUG Processing 229/740 atomic regions from SNP 68628 to 69229 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,306 DEBUG Processing 523/847 atomic regions from SNP 156702 to 157302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,411 DEBUG Processing 179/696 atomic regions from SNP 53578 to 54179 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:39,593 DEBUG Processing 179/724 atomic regions from SNP 53560 to 54160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,624 DEBUG Processing 524/847 atomic regions from SNP 157002 to 157602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,637 DEBUG Processing 230/740 atomic regions from SNP 68929 to 69530 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,712 DEBUG Processing 180/696 atomic regions from SNP 53879 to 54480 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:39,892 DEBUG Processing 180/724 atomic regions from SNP 53860 to 54460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,939 DEBUG Processing 525/847 atomic regions from SNP 157302 to 157902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,943 DEBUG Processing 231/740 atomic regions from SNP 69230 to 69831 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,015 DEBUG Processing 181/696 atomic regions from SNP 54180 to 54781 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:40,191 DEBUG Processing 181/724 atomic regions from SNP 54160 to 54760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,250 DEBUG Processing 232/740 atomic regions from SNP 69531 to 70132 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,255 DEBUG Processing 526/847 atomic regions from SNP 157602 to 158202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,322 DEBUG Processing 182/696 atomic regions from SNP 54481 to 55082 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:40,489 DEBUG Processing 182/724 atomic regions from SNP 54460 to 55060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,560 DEBUG Processing 233/740 atomic regions from SNP 69832 to 70433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,573 DEBUG Processing 527/847 atomic regions from SNP 157902 to 158502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,629 DEBUG Processing 183/696 atomic regions from SNP 54782 to 55383 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:40,787 DEBUG Processing 183/724 atomic regions from SNP 54760 to 55360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,867 DEBUG Processing 234/740 atomic regions from SNP 70133 to 70734 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,890 DEBUG Processing 528/847 atomic regions from SNP 158202 to 158802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,935 DEBUG Processing 184/696 atomic regions from SNP 55083 to 55684 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:41,082 DEBUG Processing 184/724 atomic regions from SNP 55060 to 55660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,193 DEBUG Processing 235/740 atomic regions from SNP 70434 to 71035 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,231 DEBUG Processing 529/847 atomic regions from SNP 158502 to 159102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,241 DEBUG Processing 185/696 atomic regions from SNP 55384 to 55985 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:41,378 DEBUG Processing 185/724 atomic regions from SNP 55360 to 55960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,535 DEBUG Processing 236/740 atomic regions from SNP 70735 to 71336 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,552 DEBUG Processing 186/696 atomic regions from SNP 55685 to 56286 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:41,561 DEBUG Processing 530/847 atomic regions from SNP 158802 to 159402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,676 DEBUG Processing 186/724 atomic regions from SNP 55660 to 56260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,854 DEBUG Processing 237/740 atomic regions from SNP 71036 to 71637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,862 DEBUG Processing 187/696 atomic regions from SNP 55986 to 56587 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:41,886 DEBUG Processing 531/847 atomic regions from SNP 159102 to 159702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,980 DEBUG Processing 187/724 atomic regions from SNP 55960 to 56560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,157 DEBUG Processing 238/740 atomic regions from SNP 71337 to 71938 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,164 DEBUG Processing 188/696 atomic regions from SNP 56287 to 56888 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:42,205 DEBUG Processing 532/847 atomic regions from SNP 159402 to 160002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,279 DEBUG Processing 188/724 atomic regions from SNP 56260 to 56860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,460 DEBUG Processing 239/740 atomic regions from SNP 71638 to 72239 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,467 DEBUG Processing 189/696 atomic regions from SNP 56588 to 57189 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:42,523 DEBUG Processing 533/847 atomic regions from SNP 159702 to 160302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,569 DEBUG Processing 189/724 atomic regions from SNP 56560 to 57160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,761 DEBUG Processing 240/740 atomic regions from SNP 71939 to 72540 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,768 DEBUG Processing 190/696 atomic regions from SNP 56889 to 57490 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:42,839 DEBUG Processing 534/847 atomic regions from SNP 160002 to 160602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,862 DEBUG Processing 190/724 atomic regions from SNP 56860 to 57460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,070 DEBUG Processing 241/740 atomic regions from SNP 72240 to 72841 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,079 DEBUG Processing 191/696 atomic regions from SNP 57190 to 57791 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:43,159 DEBUG Processing 535/847 atomic regions from SNP 160302 to 160902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,162 DEBUG Processing 191/724 atomic regions from SNP 57160 to 57760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,379 DEBUG Processing 242/740 atomic regions from SNP 72541 to 73142 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,390 DEBUG Processing 192/696 atomic regions from SNP 57491 to 58092 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:43,463 DEBUG Processing 192/724 atomic regions from SNP 57460 to 58060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,478 DEBUG Processing 536/847 atomic regions from SNP 160602 to 161202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,688 DEBUG Processing 243/740 atomic regions from SNP 72842 to 73443 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,700 DEBUG Processing 193/696 atomic regions from SNP 57792 to 58393 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:43,762 DEBUG Processing 193/724 atomic regions from SNP 57760 to 58360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,795 DEBUG Processing 537/847 atomic regions from SNP 160902 to 161502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,990 DEBUG Processing 244/740 atomic regions from SNP 73143 to 73744 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,003 DEBUG Processing 194/696 atomic regions from SNP 58093 to 58694 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:44,059 DEBUG Processing 194/724 atomic regions from SNP 58060 to 58660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,108 DEBUG Processing 538/847 atomic regions from SNP 161202 to 161802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,294 DEBUG Processing 245/740 atomic regions from SNP 73444 to 74045 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,307 DEBUG Processing 195/696 atomic regions from SNP 58394 to 58995 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:44,356 DEBUG Processing 195/724 atomic regions from SNP 58360 to 58960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,417 DEBUG Processing 539/847 atomic regions from SNP 161502 to 162102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,599 DEBUG Processing 246/740 atomic regions from SNP 73745 to 74346 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,611 DEBUG Processing 196/696 atomic regions from SNP 58695 to 59296 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:44,653 DEBUG Processing 196/724 atomic regions from SNP 58660 to 59260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,725 DEBUG Processing 540/847 atomic regions from SNP 161802 to 162402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,901 DEBUG Processing 247/740 atomic regions from SNP 74046 to 74647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,914 DEBUG Processing 197/696 atomic regions from SNP 58996 to 59597 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:44,949 DEBUG Processing 197/724 atomic regions from SNP 58960 to 59560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,035 DEBUG Processing 541/847 atomic regions from SNP 162102 to 162702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,206 DEBUG Processing 248/740 atomic regions from SNP 74347 to 74948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,220 DEBUG Processing 198/696 atomic regions from SNP 59297 to 59898 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:45,246 DEBUG Processing 198/724 atomic regions from SNP 59260 to 59860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,344 DEBUG Processing 542/847 atomic regions from SNP 162402 to 163002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,512 DEBUG Processing 249/740 atomic regions from SNP 74648 to 75249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,527 DEBUG Processing 199/696 atomic regions from SNP 59598 to 60199 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:45,544 DEBUG Processing 199/724 atomic regions from SNP 59560 to 60160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,654 DEBUG Processing 543/847 atomic regions from SNP 162702 to 163302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,819 DEBUG Processing 250/740 atomic regions from SNP 74949 to 75550 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,833 DEBUG Processing 200/696 atomic regions from SNP 59899 to 60500 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:45,842 DEBUG Processing 200/724 atomic regions from SNP 59860 to 60460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,994 DEBUG Processing 544/847 atomic regions from SNP 163002 to 163602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,125 DEBUG Processing 251/740 atomic regions from SNP 75250 to 75851 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,141 DEBUG Processing 201/724 atomic regions from SNP 60160 to 60760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,141 DEBUG Processing 201/696 atomic regions from SNP 60200 to 60801 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:46,311 DEBUG Processing 545/847 atomic regions from SNP 163302 to 163902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,431 DEBUG Processing 252/740 atomic regions from SNP 75551 to 76152 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,441 DEBUG Processing 202/724 atomic regions from SNP 60460 to 61060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,449 DEBUG Processing 202/696 atomic regions from SNP 60501 to 61102 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:46,624 DEBUG Processing 546/847 atomic regions from SNP 163602 to 164202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,739 DEBUG Processing 253/740 atomic regions from SNP 75852 to 76453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,743 DEBUG Processing 203/724 atomic regions from SNP 60760 to 61360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,756 DEBUG Processing 203/696 atomic regions from SNP 60802 to 61403 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:46,936 DEBUG Processing 547/847 atomic regions from SNP 163902 to 164502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,046 DEBUG Processing 204/724 atomic regions from SNP 61060 to 61660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,048 DEBUG Processing 254/740 atomic regions from SNP 76153 to 76754 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,064 DEBUG Processing 204/696 atomic regions from SNP 61103 to 61704 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:47,250 DEBUG Processing 548/847 atomic regions from SNP 164202 to 164802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,346 DEBUG Processing 205/724 atomic regions from SNP 61360 to 61960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,356 DEBUG Processing 255/740 atomic regions from SNP 76454 to 77055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,372 DEBUG Processing 205/696 atomic regions from SNP 61404 to 62005 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:47,564 DEBUG Processing 549/847 atomic regions from SNP 164502 to 165102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,644 DEBUG Processing 206/724 atomic regions from SNP 61660 to 62260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,662 DEBUG Processing 256/740 atomic regions from SNP 76755 to 77356 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,678 DEBUG Processing 206/696 atomic regions from SNP 61705 to 62306 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:47,876 DEBUG Processing 550/847 atomic regions from SNP 164802 to 165402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,940 DEBUG Processing 207/724 atomic regions from SNP 61960 to 62560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,968 DEBUG Processing 257/740 atomic regions from SNP 77056 to 77657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,984 DEBUG Processing 207/696 atomic regions from SNP 62006 to 62607 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:48,189 DEBUG Processing 551/847 atomic regions from SNP 165102 to 165702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,239 DEBUG Processing 208/724 atomic regions from SNP 62260 to 62860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,269 DEBUG Processing 258/740 atomic regions from SNP 77357 to 77958 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,288 DEBUG Processing 208/696 atomic regions from SNP 62307 to 62908 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:48,507 DEBUG Processing 552/847 atomic regions from SNP 165402 to 166002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,536 DEBUG Processing 209/724 atomic regions from SNP 62560 to 63160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,572 DEBUG Processing 259/740 atomic regions from SNP 77658 to 78259 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,593 DEBUG Processing 209/696 atomic regions from SNP 62608 to 63209 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:48,822 DEBUG Processing 553/847 atomic regions from SNP 165702 to 166302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,835 DEBUG Processing 210/724 atomic regions from SNP 62860 to 63460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,879 DEBUG Processing 260/740 atomic regions from SNP 77959 to 78560 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,902 DEBUG Processing 210/696 atomic regions from SNP 62909 to 63510 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:49,137 DEBUG Processing 211/724 atomic regions from SNP 63160 to 63760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,143 DEBUG Processing 554/847 atomic regions from SNP 166002 to 166602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,187 DEBUG Processing 261/740 atomic regions from SNP 78260 to 78861 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,212 DEBUG Processing 211/696 atomic regions from SNP 63210 to 63811 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:49,437 DEBUG Processing 212/724 atomic regions from SNP 63460 to 64060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,461 DEBUG Processing 555/847 atomic regions from SNP 166302 to 166902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,496 DEBUG Processing 262/740 atomic regions from SNP 78561 to 79162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,528 DEBUG Processing 212/696 atomic regions from SNP 63511 to 64112 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:49,735 DEBUG Processing 213/724 atomic regions from SNP 63760 to 64360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,778 DEBUG Processing 556/847 atomic regions from SNP 166602 to 167202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,805 DEBUG Processing 263/740 atomic regions from SNP 78862 to 79463 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,872 DEBUG Processing 213/696 atomic regions from SNP 63812 to 64413 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:50,042 DEBUG Processing 214/724 atomic regions from SNP 64060 to 64660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,094 DEBUG Processing 557/847 atomic regions from SNP 166902 to 167502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,112 DEBUG Processing 264/740 atomic regions from SNP 79163 to 79764 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,201 DEBUG Processing 214/696 atomic regions from SNP 64113 to 64714 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:50,344 DEBUG Processing 215/724 atomic regions from SNP 64360 to 64960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,412 DEBUG Processing 558/847 atomic regions from SNP 167202 to 167802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,415 DEBUG Processing 265/740 atomic regions from SNP 79464 to 80065 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,503 DEBUG Processing 215/696 atomic regions from SNP 64414 to 65015 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:50,642 DEBUG Processing 216/724 atomic regions from SNP 64660 to 65260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,722 DEBUG Processing 266/740 atomic regions from SNP 79765 to 80366 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,731 DEBUG Processing 559/847 atomic regions from SNP 167502 to 168102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,807 DEBUG Processing 216/696 atomic regions from SNP 64715 to 65316 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:50,938 DEBUG Processing 217/724 atomic regions from SNP 64960 to 65560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,026 DEBUG Processing 267/740 atomic regions from SNP 80066 to 80667 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,047 DEBUG Processing 560/847 atomic regions from SNP 167802 to 168402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,111 DEBUG Processing 217/696 atomic regions from SNP 65016 to 65617 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:51,231 DEBUG Processing 218/724 atomic regions from SNP 65260 to 65860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,330 DEBUG Processing 268/740 atomic regions from SNP 80367 to 80968 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,366 DEBUG Processing 561/847 atomic regions from SNP 168102 to 168702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,414 DEBUG Processing 218/696 atomic regions from SNP 65317 to 65918 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:51,522 DEBUG Processing 219/724 atomic regions from SNP 65560 to 66160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,634 DEBUG Processing 269/740 atomic regions from SNP 80668 to 81269 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,681 DEBUG Processing 562/847 atomic regions from SNP 168402 to 169002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,718 DEBUG Processing 219/696 atomic regions from SNP 65618 to 66219 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:51,815 DEBUG Processing 220/724 atomic regions from SNP 65860 to 66460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,937 DEBUG Processing 270/740 atomic regions from SNP 80969 to 81570 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,994 DEBUG Processing 563/847 atomic regions from SNP 168702 to 169302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,022 DEBUG Processing 220/696 atomic regions from SNP 65919 to 66520 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:52,108 DEBUG Processing 221/724 atomic regions from SNP 66160 to 66760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,240 DEBUG Processing 271/740 atomic regions from SNP 81270 to 81871 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,309 DEBUG Processing 564/847 atomic regions from SNP 169002 to 169602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,325 DEBUG Processing 221/696 atomic regions from SNP 66220 to 66821 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:52,403 DEBUG Processing 222/724 atomic regions from SNP 66460 to 67060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,543 DEBUG Processing 272/740 atomic regions from SNP 81571 to 82172 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,625 DEBUG Processing 565/847 atomic regions from SNP 169302 to 169902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,629 DEBUG Processing 222/696 atomic regions from SNP 66521 to 67122 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:52,695 DEBUG Processing 223/724 atomic regions from SNP 66760 to 67360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,844 DEBUG Processing 273/740 atomic regions from SNP 81872 to 82473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,935 DEBUG Processing 223/696 atomic regions from SNP 66822 to 67423 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:52,943 DEBUG Processing 566/847 atomic regions from SNP 169602 to 170202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,995 DEBUG Processing 224/724 atomic regions from SNP 67060 to 67660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,144 DEBUG Processing 274/740 atomic regions from SNP 82173 to 82774 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,239 DEBUG Processing 224/696 atomic regions from SNP 67123 to 67724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:53,262 DEBUG Processing 567/847 atomic regions from SNP 169902 to 170502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,292 DEBUG Processing 225/724 atomic regions from SNP 67360 to 67960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,444 DEBUG Processing 275/740 atomic regions from SNP 82474 to 83075 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,544 DEBUG Processing 225/696 atomic regions from SNP 67424 to 68024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:53,579 DEBUG Processing 568/847 atomic regions from SNP 170202 to 170802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,592 DEBUG Processing 226/724 atomic regions from SNP 67660 to 68260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,744 DEBUG Processing 276/740 atomic regions from SNP 82775 to 83376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,861 DEBUG Processing 226/696 atomic regions from SNP 67724 to 68324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:53,891 DEBUG Processing 227/724 atomic regions from SNP 67960 to 68560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,896 DEBUG Processing 569/847 atomic regions from SNP 170502 to 171102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,045 DEBUG Processing 277/740 atomic regions from SNP 83076 to 83677 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,180 DEBUG Processing 227/696 atomic regions from SNP 68024 to 68624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:54,192 DEBUG Processing 228/724 atomic regions from SNP 68260 to 68860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,216 DEBUG Processing 570/847 atomic regions from SNP 170802 to 171402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,345 DEBUG Processing 278/740 atomic regions from SNP 83377 to 83978 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,484 DEBUG Processing 228/696 atomic regions from SNP 68324 to 68924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:54,494 DEBUG Processing 229/724 atomic regions from SNP 68560 to 69160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,534 DEBUG Processing 571/847 atomic regions from SNP 171102 to 171702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,644 DEBUG Processing 279/740 atomic regions from SNP 83678 to 84279 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,787 DEBUG Processing 229/696 atomic regions from SNP 68624 to 69224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:54,795 DEBUG Processing 230/724 atomic regions from SNP 68860 to 69460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,846 DEBUG Processing 572/847 atomic regions from SNP 171402 to 172002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,941 DEBUG Processing 280/740 atomic regions from SNP 83979 to 84580 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,089 DEBUG Processing 230/696 atomic regions from SNP 68924 to 69524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:55,096 DEBUG Processing 231/724 atomic regions from SNP 69160 to 69760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,158 DEBUG Processing 573/847 atomic regions from SNP 171702 to 172302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,240 DEBUG Processing 281/740 atomic regions from SNP 84280 to 84881 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,392 DEBUG Processing 231/696 atomic regions from SNP 69224 to 69824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:55,400 DEBUG Processing 232/724 atomic regions from SNP 69460 to 70060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,471 DEBUG Processing 574/847 atomic regions from SNP 172002 to 172602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,540 DEBUG Processing 282/740 atomic regions from SNP 84581 to 85182 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,700 DEBUG Processing 233/724 atomic regions from SNP 69760 to 70360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,702 DEBUG Processing 232/696 atomic regions from SNP 69524 to 70124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:55,784 DEBUG Processing 575/847 atomic regions from SNP 172302 to 172902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,842 DEBUG Processing 283/740 atomic regions from SNP 84882 to 85483 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,001 DEBUG Processing 234/724 atomic regions from SNP 70060 to 70660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,019 DEBUG Processing 233/696 atomic regions from SNP 69824 to 70424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:56,098 DEBUG Processing 576/847 atomic regions from SNP 172602 to 173202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,143 DEBUG Processing 284/740 atomic regions from SNP 85183 to 85784 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,299 DEBUG Processing 235/724 atomic regions from SNP 70360 to 70960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,320 DEBUG Processing 234/696 atomic regions from SNP 70124 to 70724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:56,413 DEBUG Processing 577/847 atomic regions from SNP 172902 to 173502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,448 DEBUG Processing 285/740 atomic regions from SNP 85484 to 86085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,597 DEBUG Processing 236/724 atomic regions from SNP 70660 to 71260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,621 DEBUG Processing 235/696 atomic regions from SNP 70424 to 71024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:56,730 DEBUG Processing 578/847 atomic regions from SNP 173202 to 173802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,751 DEBUG Processing 286/740 atomic regions from SNP 85785 to 86385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,897 DEBUG Processing 237/724 atomic regions from SNP 70960 to 71560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,921 DEBUG Processing 236/696 atomic regions from SNP 70724 to 71324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:57,048 DEBUG Processing 579/847 atomic regions from SNP 173502 to 174102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,058 DEBUG Processing 287/740 atomic regions from SNP 86085 to 86685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,195 DEBUG Processing 238/724 atomic regions from SNP 71260 to 71860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,244 DEBUG Processing 237/696 atomic regions from SNP 71024 to 71624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:57,361 DEBUG Processing 288/740 atomic regions from SNP 86385 to 86985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,362 DEBUG Processing 580/847 atomic regions from SNP 173802 to 174402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,501 DEBUG Processing 239/724 atomic regions from SNP 71560 to 72160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,561 DEBUG Processing 238/696 atomic regions from SNP 71324 to 71924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:57,667 DEBUG Processing 289/740 atomic regions from SNP 86685 to 87285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,677 DEBUG Processing 581/847 atomic regions from SNP 174102 to 174702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,820 DEBUG Processing 240/724 atomic regions from SNP 71860 to 72460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,860 DEBUG Processing 239/696 atomic regions from SNP 71624 to 72224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:57,973 DEBUG Processing 290/740 atomic regions from SNP 86985 to 87585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,991 DEBUG Processing 582/847 atomic regions from SNP 174402 to 175002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,127 DEBUG Processing 241/724 atomic regions from SNP 72160 to 72760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,163 DEBUG Processing 240/696 atomic regions from SNP 71924 to 72524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:58,283 DEBUG Processing 291/740 atomic regions from SNP 87285 to 87885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,305 DEBUG Processing 583/847 atomic regions from SNP 174702 to 175302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,447 DEBUG Processing 242/724 atomic regions from SNP 72460 to 73060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,463 DEBUG Processing 241/696 atomic regions from SNP 72224 to 72824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:58,587 DEBUG Processing 292/740 atomic regions from SNP 87585 to 88185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,620 DEBUG Processing 584/847 atomic regions from SNP 175002 to 175602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,761 DEBUG Processing 243/724 atomic regions from SNP 72760 to 73360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,767 DEBUG Processing 242/696 atomic regions from SNP 72524 to 73124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:58,892 DEBUG Processing 293/740 atomic regions from SNP 87885 to 88485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,938 DEBUG Processing 585/847 atomic regions from SNP 175302 to 175902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,062 DEBUG Processing 244/724 atomic regions from SNP 73060 to 73660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,072 DEBUG Processing 243/696 atomic regions from SNP 72824 to 73424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:59,198 DEBUG Processing 294/740 atomic regions from SNP 88185 to 88785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,259 DEBUG Processing 586/847 atomic regions from SNP 175602 to 176202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,360 DEBUG Processing 245/724 atomic regions from SNP 73360 to 73960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,373 DEBUG Processing 244/696 atomic regions from SNP 73124 to 73724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:59,502 DEBUG Processing 295/740 atomic regions from SNP 88485 to 89085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,578 DEBUG Processing 587/847 atomic regions from SNP 175902 to 176502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,658 DEBUG Processing 246/724 atomic regions from SNP 73660 to 74260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,674 DEBUG Processing 245/696 atomic regions from SNP 73424 to 74024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:51:59,804 DEBUG Processing 296/740 atomic regions from SNP 88785 to 89385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,894 DEBUG Processing 588/847 atomic regions from SNP 176202 to 176802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,954 DEBUG Processing 247/724 atomic regions from SNP 73960 to 74560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,975 DEBUG Processing 246/696 atomic regions from SNP 73724 to 74324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:00,107 DEBUG Processing 297/740 atomic regions from SNP 89085 to 89685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,216 DEBUG Processing 589/847 atomic regions from SNP 176502 to 177102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,252 DEBUG Processing 248/724 atomic regions from SNP 74260 to 74860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,277 DEBUG Processing 247/696 atomic regions from SNP 74024 to 74624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:00,408 DEBUG Processing 298/740 atomic regions from SNP 89385 to 89985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,534 DEBUG Processing 590/847 atomic regions from SNP 176802 to 177402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,551 DEBUG Processing 249/724 atomic regions from SNP 74560 to 75160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,579 DEBUG Processing 248/696 atomic regions from SNP 74324 to 74924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:00,709 DEBUG Processing 299/740 atomic regions from SNP 89685 to 90285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,852 DEBUG Processing 250/724 atomic regions from SNP 74860 to 75460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,857 DEBUG Processing 591/847 atomic regions from SNP 177102 to 177702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,880 DEBUG Processing 249/696 atomic regions from SNP 74624 to 75224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:01,009 DEBUG Processing 300/740 atomic regions from SNP 89985 to 90585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,154 DEBUG Processing 251/724 atomic regions from SNP 75160 to 75760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,179 DEBUG Processing 592/847 atomic regions from SNP 177402 to 178002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,180 DEBUG Processing 250/696 atomic regions from SNP 74924 to 75524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:01,310 DEBUG Processing 301/740 atomic regions from SNP 90285 to 90885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,456 DEBUG Processing 252/724 atomic regions from SNP 75460 to 76060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,485 DEBUG Processing 251/696 atomic regions from SNP 75224 to 75824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:01,499 DEBUG Processing 593/847 atomic regions from SNP 177702 to 178302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,616 DEBUG Processing 302/740 atomic regions from SNP 90585 to 91185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,779 DEBUG Processing 253/724 atomic regions from SNP 75760 to 76360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,808 DEBUG Processing 252/696 atomic regions from SNP 75524 to 76124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:01,843 DEBUG Processing 594/847 atomic regions from SNP 178002 to 178602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,927 DEBUG Processing 303/740 atomic regions from SNP 90885 to 91485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,084 DEBUG Processing 254/724 atomic regions from SNP 76060 to 76660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,111 DEBUG Processing 253/696 atomic regions from SNP 75824 to 76424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:02,161 DEBUG Processing 595/847 atomic regions from SNP 178302 to 178902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,226 DEBUG Processing 304/740 atomic regions from SNP 91185 to 91785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,383 DEBUG Processing 255/724 atomic regions from SNP 76360 to 76960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,405 DEBUG Processing 254/696 atomic regions from SNP 76124 to 76724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:02,475 DEBUG Processing 596/847 atomic regions from SNP 178602 to 179202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,522 DEBUG Processing 305/740 atomic regions from SNP 91485 to 92085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,683 DEBUG Processing 256/724 atomic regions from SNP 76660 to 77260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,700 DEBUG Processing 255/696 atomic regions from SNP 76424 to 77024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:02,797 DEBUG Processing 597/847 atomic regions from SNP 178902 to 179502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,826 DEBUG Processing 306/740 atomic regions from SNP 91785 to 92385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,988 DEBUG Processing 257/724 atomic regions from SNP 76960 to 77560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,001 DEBUG Processing 256/696 atomic regions from SNP 76724 to 77324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:03,127 DEBUG Processing 598/847 atomic regions from SNP 179202 to 179802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,135 DEBUG Processing 307/740 atomic regions from SNP 92085 to 92685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,296 DEBUG Processing 258/724 atomic regions from SNP 77260 to 77860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,300 DEBUG Processing 257/696 atomic regions from SNP 77024 to 77624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:03,437 DEBUG Processing 308/740 atomic regions from SNP 92385 to 92985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,453 DEBUG Processing 599/847 atomic regions from SNP 179502 to 180102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,603 DEBUG Processing 259/724 atomic regions from SNP 77560 to 78160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,606 DEBUG Processing 258/696 atomic regions from SNP 77324 to 77924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:03,746 DEBUG Processing 309/740 atomic regions from SNP 92685 to 93285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,787 DEBUG Processing 600/847 atomic regions from SNP 179802 to 180402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,914 DEBUG Processing 259/696 atomic regions from SNP 77624 to 78224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:03,919 DEBUG Processing 260/724 atomic regions from SNP 77860 to 78460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,038 DEBUG Processing 310/740 atomic regions from SNP 92985 to 93585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,093 DEBUG Processing 601/847 atomic regions from SNP 180102 to 180702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,201 DEBUG Processing 260/696 atomic regions from SNP 77924 to 78524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:04,209 DEBUG Processing 261/724 atomic regions from SNP 78160 to 78760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,323 DEBUG Processing 311/740 atomic regions from SNP 93285 to 93885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,397 DEBUG Processing 602/847 atomic regions from SNP 180402 to 181002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,482 DEBUG Processing 261/696 atomic regions from SNP 78224 to 78824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:04,491 DEBUG Processing 262/724 atomic regions from SNP 78460 to 79060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,603 DEBUG Processing 312/740 atomic regions from SNP 93585 to 94185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,700 DEBUG Processing 603/847 atomic regions from SNP 180702 to 181302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,766 DEBUG Processing 262/696 atomic regions from SNP 78524 to 79124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:04,777 DEBUG Processing 263/724 atomic regions from SNP 78760 to 79360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,894 DEBUG Processing 313/740 atomic regions from SNP 93885 to 94485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,022 DEBUG Processing 604/847 atomic regions from SNP 181002 to 181602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,063 DEBUG Processing 263/696 atomic regions from SNP 78824 to 79424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:05,076 DEBUG Processing 264/724 atomic regions from SNP 79060 to 79660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,190 DEBUG Processing 314/740 atomic regions from SNP 94185 to 94785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,340 DEBUG Processing 605/847 atomic regions from SNP 181302 to 181902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,363 DEBUG Processing 264/696 atomic regions from SNP 79124 to 79724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:05,374 DEBUG Processing 265/724 atomic regions from SNP 79360 to 79960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,487 DEBUG Processing 315/740 atomic regions from SNP 94485 to 95085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,660 DEBUG Processing 606/847 atomic regions from SNP 181602 to 182202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,664 DEBUG Processing 265/696 atomic regions from SNP 79424 to 80024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:05,673 DEBUG Processing 266/724 atomic regions from SNP 79660 to 80260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,793 DEBUG Processing 316/740 atomic regions from SNP 94785 to 95385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,969 DEBUG Processing 266/696 atomic regions from SNP 79724 to 80324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:05,975 DEBUG Processing 267/724 atomic regions from SNP 79960 to 80560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,982 DEBUG Processing 607/847 atomic regions from SNP 181902 to 182502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,090 DEBUG Processing 317/740 atomic regions from SNP 95085 to 95685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,272 DEBUG Processing 267/696 atomic regions from SNP 80024 to 80624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:06,276 DEBUG Processing 268/724 atomic regions from SNP 80260 to 80860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,302 DEBUG Processing 608/847 atomic regions from SNP 182202 to 182802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,390 DEBUG Processing 318/740 atomic regions from SNP 95385 to 95985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,577 DEBUG Processing 268/696 atomic regions from SNP 80324 to 80924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:06,581 DEBUG Processing 269/724 atomic regions from SNP 80560 to 81160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,624 DEBUG Processing 609/847 atomic regions from SNP 182502 to 183102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,691 DEBUG Processing 319/740 atomic regions from SNP 95685 to 96285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,879 DEBUG Processing 269/696 atomic regions from SNP 80624 to 81224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:06,886 DEBUG Processing 270/724 atomic regions from SNP 80860 to 81460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,942 DEBUG Processing 610/847 atomic regions from SNP 182802 to 183402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,992 DEBUG Processing 320/740 atomic regions from SNP 95985 to 96585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,174 DEBUG Processing 270/696 atomic regions from SNP 80924 to 81524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:07,180 DEBUG Processing 271/724 atomic regions from SNP 81160 to 81760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,251 DEBUG Processing 611/847 atomic regions from SNP 183102 to 183702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,281 DEBUG Processing 321/740 atomic regions from SNP 96285 to 96885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,410 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:52:07,484 DEBUG Processing 272/724 atomic regions from SNP 81460 to 82060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,508 DEBUG Processing 271/696 atomic regions from SNP 81224 to 81824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:07,574 DEBUG Processing 612/847 atomic regions from SNP 183402 to 184002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,588 DEBUG Processing 322/740 atomic regions from SNP 96585 to 97185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,785 DEBUG Processing 273/724 atomic regions from SNP 81760 to 82360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,817 DEBUG Processing 272/696 atomic regions from SNP 81524 to 82124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:07,881 DEBUG Processing 323/740 atomic regions from SNP 96885 to 97485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,890 DEBUG Processing 613/847 atomic regions from SNP 183702 to 184302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,077 DEBUG Processing 274/724 atomic regions from SNP 82060 to 82660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,107 DEBUG Processing 273/696 atomic regions from SNP 81824 to 82424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:08,170 DEBUG Processing 324/740 atomic regions from SNP 97185 to 97785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,193 DEBUG Processing 614/847 atomic regions from SNP 184002 to 184602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,365 DEBUG Processing 275/724 atomic regions from SNP 82360 to 82960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,391 DEBUG Processing 274/696 atomic regions from SNP 82124 to 82724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:08,480 DEBUG Processing 325/740 atomic regions from SNP 97485 to 98085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,496 DEBUG Processing 615/847 atomic regions from SNP 184302 to 184902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,653 DEBUG Processing 276/724 atomic regions from SNP 82660 to 83260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,673 DEBUG Processing 275/696 atomic regions from SNP 82424 to 83024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:08,796 DEBUG Processing 616/847 atomic regions from SNP 184602 to 185202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,802 DEBUG Processing 326/740 atomic regions from SNP 97785 to 98385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,937 DEBUG Processing 277/724 atomic regions from SNP 82960 to 83560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,950 DEBUG Processing 276/696 atomic regions from SNP 82724 to 83324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:09,095 DEBUG Processing 617/847 atomic regions from SNP 184902 to 185502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,105 DEBUG Processing 327/740 atomic regions from SNP 98085 to 98685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,223 DEBUG Processing 278/724 atomic regions from SNP 83260 to 83860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,232 DEBUG Processing 277/696 atomic regions from SNP 83024 to 83624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:09,398 DEBUG Processing 618/847 atomic regions from SNP 185202 to 185802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,413 DEBUG Processing 328/740 atomic regions from SNP 98385 to 98985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,512 DEBUG Processing 279/724 atomic regions from SNP 83560 to 84160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,517 DEBUG Processing 278/696 atomic regions from SNP 83324 to 83924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:09,698 DEBUG Processing 329/740 atomic regions from SNP 98685 to 99285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,700 DEBUG Processing 619/847 atomic regions from SNP 185502 to 186102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,806 DEBUG Processing 279/696 atomic regions from SNP 83624 to 84224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:09,811 DEBUG Processing 280/724 atomic regions from SNP 83860 to 84460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,991 DEBUG Processing 330/740 atomic regions from SNP 98985 to 99585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,008 DEBUG Processing 620/847 atomic regions from SNP 185802 to 186402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,093 DEBUG Processing 280/696 atomic regions from SNP 83924 to 84524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:10,098 DEBUG Processing 281/724 atomic regions from SNP 84160 to 84760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,284 DEBUG Processing 331/740 atomic regions from SNP 99285 to 99885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,319 DEBUG Processing 621/847 atomic regions from SNP 186102 to 186702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,381 DEBUG Processing 281/696 atomic regions from SNP 84224 to 84824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:10,385 DEBUG Processing 282/724 atomic regions from SNP 84460 to 85060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,575 DEBUG Processing 332/740 atomic regions from SNP 99585 to 100185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,627 DEBUG Processing 622/847 atomic regions from SNP 186402 to 187002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,669 DEBUG Processing 282/696 atomic regions from SNP 84524 to 85124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:10,670 DEBUG Processing 283/724 atomic regions from SNP 84760 to 85360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,866 DEBUG Processing 333/740 atomic regions from SNP 99885 to 100485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,933 DEBUG Processing 623/847 atomic regions from SNP 186702 to 187302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,956 DEBUG Processing 284/724 atomic regions from SNP 85060 to 85660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,956 DEBUG Processing 283/696 atomic regions from SNP 84824 to 85424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:11,155 DEBUG Processing 334/740 atomic regions from SNP 100185 to 100785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,238 DEBUG Processing 624/847 atomic regions from SNP 187002 to 187602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,242 DEBUG Processing 285/724 atomic regions from SNP 85360 to 85960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,262 DEBUG Processing 284/696 atomic regions from SNP 85124 to 85724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:11,462 DEBUG Processing 335/740 atomic regions from SNP 100485 to 101085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,532 DEBUG Processing 286/724 atomic regions from SNP 85660 to 86260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,546 DEBUG Processing 625/847 atomic regions from SNP 187302 to 187902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,556 DEBUG Processing 285/696 atomic regions from SNP 85424 to 86024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:11,778 DEBUG Processing 336/740 atomic regions from SNP 100785 to 101385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,818 DEBUG Processing 287/724 atomic regions from SNP 85960 to 86560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,840 DEBUG Processing 286/696 atomic regions from SNP 85724 to 86324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:11,850 DEBUG Processing 626/847 atomic regions from SNP 187602 to 188202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,091 DEBUG Processing 337/740 atomic regions from SNP 101085 to 101685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,105 DEBUG Processing 288/724 atomic regions from SNP 86260 to 86860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,127 DEBUG Processing 287/696 atomic regions from SNP 86024 to 86624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:12,153 DEBUG Processing 627/847 atomic regions from SNP 187902 to 188502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,381 DEBUG Processing 338/740 atomic regions from SNP 101385 to 101985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,397 DEBUG Processing 289/724 atomic regions from SNP 86560 to 87160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,412 DEBUG Processing 288/696 atomic regions from SNP 86324 to 86924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:12,456 DEBUG Processing 628/847 atomic regions from SNP 188202 to 188802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,671 DEBUG Processing 339/740 atomic regions from SNP 101685 to 102285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,688 DEBUG Processing 290/724 atomic regions from SNP 86860 to 87460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,699 DEBUG Processing 289/696 atomic regions from SNP 86624 to 87224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:12,757 DEBUG Processing 629/847 atomic regions from SNP 188502 to 189102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,977 DEBUG Processing 291/724 atomic regions from SNP 87160 to 87760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,980 DEBUG Processing 340/740 atomic regions from SNP 101985 to 102585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,986 DEBUG Processing 290/696 atomic regions from SNP 86924 to 87524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:13,062 DEBUG Processing 630/847 atomic regions from SNP 188802 to 189402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,271 DEBUG Processing 292/724 atomic regions from SNP 87460 to 88060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,276 DEBUG Processing 291/696 atomic regions from SNP 87224 to 87824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:13,307 DEBUG Processing 341/740 atomic regions from SNP 102285 to 102885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,368 DEBUG Processing 631/847 atomic regions from SNP 189102 to 189702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,565 DEBUG Processing 293/724 atomic regions from SNP 87760 to 88360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,567 DEBUG Processing 292/696 atomic regions from SNP 87524 to 88124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:13,621 DEBUG Processing 342/740 atomic regions from SNP 102585 to 103185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,668 DEBUG Processing 632/847 atomic regions from SNP 189402 to 190002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,852 DEBUG Processing 294/724 atomic regions from SNP 88060 to 88660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,853 DEBUG Processing 293/696 atomic regions from SNP 87824 to 88424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:13,927 DEBUG Processing 343/740 atomic regions from SNP 102885 to 103485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,966 DEBUG Processing 633/847 atomic regions from SNP 189702 to 190302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,140 DEBUG Processing 295/724 atomic regions from SNP 88360 to 88960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,143 DEBUG Processing 294/696 atomic regions from SNP 88124 to 88724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:14,226 DEBUG Processing 344/740 atomic regions from SNP 103185 to 103785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,268 DEBUG Processing 634/847 atomic regions from SNP 190002 to 190602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,426 DEBUG Processing 296/724 atomic regions from SNP 88660 to 89260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,430 DEBUG Processing 295/696 atomic regions from SNP 88424 to 89024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:14,522 DEBUG Processing 345/740 atomic regions from SNP 103485 to 104085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,598 DEBUG Processing 635/847 atomic regions from SNP 190302 to 190902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,719 DEBUG Processing 297/724 atomic regions from SNP 88960 to 89560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,723 DEBUG Processing 296/696 atomic regions from SNP 88724 to 89324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:14,823 DEBUG Processing 346/740 atomic regions from SNP 103785 to 104385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,944 DEBUG Processing 636/847 atomic regions from SNP 190602 to 191202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,026 DEBUG Processing 298/724 atomic regions from SNP 89260 to 89860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,029 DEBUG Processing 297/696 atomic regions from SNP 89024 to 89624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:15,144 DEBUG Processing 347/740 atomic regions from SNP 104085 to 104685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,263 DEBUG Processing 637/847 atomic regions from SNP 190902 to 191502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,303 DEBUG Processing 299/724 atomic regions from SNP 89560 to 90160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,304 DEBUG Processing 298/696 atomic regions from SNP 89324 to 89924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:15,444 DEBUG Processing 348/740 atomic regions from SNP 104385 to 104985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,582 DEBUG Processing 299/696 atomic regions from SNP 89624 to 90224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:15,587 DEBUG Processing 300/724 atomic regions from SNP 89860 to 90460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,599 DEBUG Processing 638/847 atomic regions from SNP 191202 to 191802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,737 DEBUG Processing 349/740 atomic regions from SNP 104685 to 105285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,868 DEBUG Processing 300/696 atomic regions from SNP 89924 to 90524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:15,877 DEBUG Processing 301/724 atomic regions from SNP 90160 to 90760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,943 DEBUG Processing 639/847 atomic regions from SNP 191502 to 192102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,027 DEBUG Processing 350/740 atomic regions from SNP 104985 to 105585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,154 DEBUG Processing 301/696 atomic regions from SNP 90224 to 90824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:16,160 DEBUG Processing 302/724 atomic regions from SNP 90460 to 91060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,275 DEBUG Processing 640/847 atomic regions from SNP 191802 to 192402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,317 DEBUG Processing 351/740 atomic regions from SNP 105285 to 105885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,441 DEBUG Processing 303/724 atomic regions from SNP 90760 to 91360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,454 DEBUG Processing 302/696 atomic regions from SNP 90524 to 91124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:16,589 DEBUG Processing 641/847 atomic regions from SNP 192102 to 192702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,614 DEBUG Processing 352/740 atomic regions from SNP 105585 to 106185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,732 DEBUG Processing 304/724 atomic regions from SNP 91060 to 91660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,748 DEBUG Processing 303/696 atomic regions from SNP 90824 to 91424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:16,903 DEBUG Processing 642/847 atomic regions from SNP 192402 to 193002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,912 DEBUG Processing 353/740 atomic regions from SNP 105885 to 106485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,029 DEBUG Processing 305/724 atomic regions from SNP 91360 to 91960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,066 DEBUG Processing 304/696 atomic regions from SNP 91124 to 91724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:17,204 DEBUG Processing 354/740 atomic regions from SNP 106185 to 106785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,213 DEBUG Processing 643/847 atomic regions from SNP 192702 to 193302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,315 DEBUG Processing 306/724 atomic regions from SNP 91660 to 92260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,375 DEBUG Processing 305/696 atomic regions from SNP 91424 to 92024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:17,490 DEBUG Processing 355/740 atomic regions from SNP 106485 to 107085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,514 DEBUG Processing 644/847 atomic regions from SNP 193002 to 193602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,609 DEBUG Processing 307/724 atomic regions from SNP 91960 to 92560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,695 DEBUG Processing 306/696 atomic regions from SNP 91724 to 92324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:17,828 DEBUG Processing 356/740 atomic regions from SNP 106785 to 107385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,883 DEBUG Processing 645/847 atomic regions from SNP 193302 to 193902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,934 DEBUG Processing 308/724 atomic regions from SNP 92260 to 92860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,010 DEBUG Processing 307/696 atomic regions from SNP 92024 to 92624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:18,122 DEBUG Processing 357/740 atomic regions from SNP 107085 to 107685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,209 DEBUG Processing 646/847 atomic regions from SNP 193602 to 194202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,234 DEBUG Processing 309/724 atomic regions from SNP 92560 to 93160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,311 DEBUG Processing 308/696 atomic regions from SNP 92324 to 92924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:18,419 DEBUG Processing 358/740 atomic regions from SNP 107385 to 107985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,531 DEBUG Processing 647/847 atomic regions from SNP 193902 to 194502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,535 DEBUG Processing 310/724 atomic regions from SNP 92860 to 93460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,621 DEBUG Processing 309/696 atomic regions from SNP 92624 to 93224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:18,703 DEBUG Processing 359/740 atomic regions from SNP 107685 to 108285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,831 DEBUG Processing 311/724 atomic regions from SNP 93160 to 93760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,846 DEBUG Processing 648/847 atomic regions from SNP 194202 to 194802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,944 DEBUG Processing 310/696 atomic regions from SNP 92924 to 93524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:18,999 DEBUG Processing 360/740 atomic regions from SNP 107985 to 108585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,142 DEBUG Processing 312/724 atomic regions from SNP 93460 to 94060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,172 DEBUG Processing 649/847 atomic regions from SNP 194502 to 195102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,282 DEBUG Processing 311/696 atomic regions from SNP 93224 to 93824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:19,303 DEBUG Processing 361/740 atomic regions from SNP 108285 to 108885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,457 DEBUG Processing 313/724 atomic regions from SNP 93760 to 94360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,498 DEBUG Processing 650/847 atomic regions from SNP 194802 to 195402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,607 DEBUG Processing 362/740 atomic regions from SNP 108585 to 109185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,612 DEBUG Processing 312/696 atomic regions from SNP 93524 to 94124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:19,765 DEBUG Processing 314/724 atomic regions from SNP 94060 to 94660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,842 DEBUG Processing 651/847 atomic regions from SNP 195102 to 195702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,900 DEBUG Processing 363/740 atomic regions from SNP 108885 to 109485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,913 DEBUG Processing 313/696 atomic regions from SNP 93824 to 94424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:20,067 DEBUG Processing 315/724 atomic regions from SNP 94360 to 94960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,187 DEBUG Processing 364/740 atomic regions from SNP 109185 to 109785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,191 DEBUG Processing 652/847 atomic regions from SNP 195402 to 196002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,214 DEBUG Processing 314/696 atomic regions from SNP 94124 to 94724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:20,358 DEBUG Processing 316/724 atomic regions from SNP 94660 to 95260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,473 DEBUG Processing 365/740 atomic regions from SNP 109485 to 110085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,518 DEBUG Processing 315/696 atomic regions from SNP 94424 to 95024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:20,535 DEBUG Processing 653/847 atomic regions from SNP 195702 to 196302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,644 DEBUG Processing 317/724 atomic regions from SNP 94960 to 95560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,754 DEBUG Processing 366/740 atomic regions from SNP 109785 to 110385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,820 DEBUG Processing 316/696 atomic regions from SNP 94724 to 95324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:20,859 DEBUG Processing 654/847 atomic regions from SNP 196002 to 196602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,931 DEBUG Processing 318/724 atomic regions from SNP 95260 to 95860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,029 DEBUG Processing 367/740 atomic regions from SNP 110085 to 110685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,101 DEBUG Processing 317/696 atomic regions from SNP 95024 to 95624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:21,167 DEBUG Processing 655/847 atomic regions from SNP 196302 to 196902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,209 DEBUG Processing 319/724 atomic regions from SNP 95560 to 96160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,315 DEBUG Processing 368/740 atomic regions from SNP 110385 to 110985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,391 DEBUG Processing 318/696 atomic regions from SNP 95324 to 95924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:21,501 DEBUG Processing 656/847 atomic regions from SNP 196602 to 197202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,519 DEBUG Processing 320/724 atomic regions from SNP 95860 to 96460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,606 DEBUG Processing 369/740 atomic regions from SNP 110685 to 111285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,685 DEBUG Processing 319/696 atomic regions from SNP 95624 to 96224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:21,819 DEBUG Processing 657/847 atomic regions from SNP 196902 to 197502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,844 DEBUG Processing 321/724 atomic regions from SNP 96160 to 96760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,899 DEBUG Processing 370/740 atomic regions from SNP 110985 to 111585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,979 DEBUG Processing 320/696 atomic regions from SNP 95924 to 96524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:22,140 DEBUG Processing 658/847 atomic regions from SNP 197202 to 197802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,145 DEBUG Processing 322/724 atomic regions from SNP 96460 to 97060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,193 DEBUG Processing 371/740 atomic regions from SNP 111285 to 111885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,270 DEBUG Processing 321/696 atomic regions from SNP 96224 to 96824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:22,448 DEBUG Processing 323/724 atomic regions from SNP 96760 to 97360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,462 DEBUG Processing 659/847 atomic regions from SNP 197502 to 198102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,489 DEBUG Processing 372/740 atomic regions from SNP 111585 to 112185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,562 DEBUG Processing 322/696 atomic regions from SNP 96524 to 97124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:22,754 DEBUG Processing 324/724 atomic regions from SNP 97060 to 97660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,784 DEBUG Processing 660/847 atomic regions from SNP 197802 to 198402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,788 DEBUG Processing 373/740 atomic regions from SNP 111885 to 112485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,854 DEBUG Processing 323/696 atomic regions from SNP 96824 to 97424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:23,049 DEBUG Processing 325/724 atomic regions from SNP 97360 to 97960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,080 DEBUG Processing 374/740 atomic regions from SNP 112185 to 112785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,094 DEBUG Processing 661/847 atomic regions from SNP 198102 to 198702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,136 DEBUG Processing 324/696 atomic regions from SNP 97124 to 97724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:23,341 DEBUG Processing 326/724 atomic regions from SNP 97660 to 98260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,368 DEBUG Processing 375/740 atomic regions from SNP 112485 to 113085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,400 DEBUG Processing 662/847 atomic regions from SNP 198402 to 199002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,412 DEBUG Processing 325/696 atomic regions from SNP 97424 to 98024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:23,612 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:52:23,631 DEBUG Processing 327/724 atomic regions from SNP 97960 to 98560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,657 DEBUG Processing 376/740 atomic regions from SNP 112785 to 113385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,698 DEBUG Processing 326/696 atomic regions from SNP 97724 to 98324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:23,715 DEBUG Processing 663/847 atomic regions from SNP 198702 to 199302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,930 DEBUG Processing 328/724 atomic regions from SNP 98260 to 98860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,950 DEBUG Processing 377/740 atomic regions from SNP 113085 to 113685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,985 DEBUG Processing 327/696 atomic regions from SNP 98024 to 98624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:24,048 DEBUG Processing 664/847 atomic regions from SNP 199002 to 199602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,218 DEBUG Processing 329/724 atomic regions from SNP 98560 to 99160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,235 DEBUG Processing 378/740 atomic regions from SNP 113385 to 113985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,265 DEBUG Processing 328/696 atomic regions from SNP 98324 to 98924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:24,388 DEBUG Processing 665/847 atomic regions from SNP 199302 to 199902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,511 DEBUG Processing 330/724 atomic regions from SNP 98860 to 99460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,521 DEBUG Processing 379/740 atomic regions from SNP 113685 to 114285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,544 DEBUG Processing 329/696 atomic regions from SNP 98624 to 99224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:24,695 DEBUG Processing 666/847 atomic regions from SNP 199602 to 200202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,802 DEBUG Processing 331/724 atomic regions from SNP 99160 to 99760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,807 DEBUG Processing 380/740 atomic regions from SNP 113985 to 114585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,827 DEBUG Processing 330/696 atomic regions from SNP 98924 to 99524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:25,000 DEBUG Processing 667/847 atomic regions from SNP 199902 to 200502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,097 DEBUG Processing 332/724 atomic regions from SNP 99460 to 100060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,099 DEBUG Processing 381/740 atomic regions from SNP 114285 to 114885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,115 DEBUG Processing 331/696 atomic regions from SNP 99224 to 99824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:25,295 DEBUG Processing 668/847 atomic regions from SNP 200202 to 200802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,379 DEBUG Processing 382/740 atomic regions from SNP 114585 to 115185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,384 DEBUG Processing 333/724 atomic regions from SNP 99760 to 100360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,393 DEBUG Processing 332/696 atomic regions from SNP 99524 to 100124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:25,593 DEBUG Processing 669/847 atomic regions from SNP 200502 to 201102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,656 DEBUG Processing 383/740 atomic regions from SNP 114885 to 115485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,662 DEBUG Processing 334/724 atomic regions from SNP 100060 to 100660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,689 DEBUG Processing 333/696 atomic regions from SNP 99824 to 100424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:25,896 DEBUG Processing 670/847 atomic regions from SNP 200802 to 201402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,941 DEBUG Processing 384/740 atomic regions from SNP 115185 to 115785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,955 DEBUG Processing 335/724 atomic regions from SNP 100360 to 100960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,973 DEBUG Processing 334/696 atomic regions from SNP 100124 to 100724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:26,205 DEBUG Processing 671/847 atomic regions from SNP 201102 to 201702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,231 DEBUG Processing 385/740 atomic regions from SNP 115485 to 116085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,243 DEBUG Processing 336/724 atomic regions from SNP 100660 to 101260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,254 DEBUG Processing 335/696 atomic regions from SNP 100424 to 101024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:26,510 DEBUG Processing 672/847 atomic regions from SNP 201402 to 202002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,529 DEBUG Processing 337/724 atomic regions from SNP 100960 to 101560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,532 DEBUG Processing 386/740 atomic regions from SNP 115785 to 116385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,535 DEBUG Processing 336/696 atomic regions from SNP 100724 to 101324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:26,807 DEBUG Processing 338/724 atomic regions from SNP 101260 to 101860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,809 DEBUG Processing 337/696 atomic regions from SNP 101024 to 101624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:26,815 DEBUG Processing 673/847 atomic regions from SNP 201702 to 202302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,828 DEBUG Processing 387/740 atomic regions from SNP 116085 to 116685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,113 DEBUG Processing 339/724 atomic regions from SNP 101560 to 102160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,122 DEBUG Processing 338/696 atomic regions from SNP 101324 to 101924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:27,129 DEBUG Processing 388/740 atomic regions from SNP 116385 to 116985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,163 DEBUG Processing 674/847 atomic regions from SNP 202002 to 202602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,410 DEBUG Processing 340/724 atomic regions from SNP 101860 to 102460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,414 DEBUG Processing 339/696 atomic regions from SNP 101624 to 102224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:27,418 DEBUG Processing 389/740 atomic regions from SNP 116685 to 117285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,495 DEBUG Processing 675/847 atomic regions from SNP 202302 to 202902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,682 DEBUG Processing 341/724 atomic regions from SNP 102160 to 102760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,682 DEBUG Processing 340/696 atomic regions from SNP 101924 to 102524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:27,686 DEBUG Processing 390/740 atomic regions from SNP 116985 to 117585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,781 DEBUG Processing 676/847 atomic regions from SNP 202602 to 203202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,950 DEBUG Processing 341/696 atomic regions from SNP 102224 to 102824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:27,954 DEBUG Processing 342/724 atomic regions from SNP 102460 to 103060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,955 DEBUG Processing 391/740 atomic regions from SNP 117285 to 117885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,084 DEBUG Processing 677/847 atomic regions from SNP 202902 to 203502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,222 DEBUG Processing 342/696 atomic regions from SNP 102524 to 103124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:28,228 DEBUG Processing 392/740 atomic regions from SNP 117585 to 118185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,234 DEBUG Processing 343/724 atomic regions from SNP 102760 to 103360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,329 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:52:28,365 DEBUG chr14: Signal quantile: 0.993. signal threshold: 14. Best RMSEA: 0.024 2025-01-31 09:52:28,428 DEBUG Processing 678/847 atomic regions from SNP 203202 to 203802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,517 DEBUG Processing 343/696 atomic regions from SNP 102824 to 103424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:28,523 DEBUG Processing 393/740 atomic regions from SNP 117885 to 118485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,538 DEBUG Processing 344/724 atomic regions from SNP 103060 to 103660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,779 DEBUG Processing 679/847 atomic regions from SNP 203502 to 204102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,809 DEBUG Processing 344/696 atomic regions from SNP 103124 to 103724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:28,833 DEBUG Processing 345/724 atomic regions from SNP 103360 to 103960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,835 DEBUG Processing 394/740 atomic regions from SNP 118185 to 118785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,096 DEBUG Processing 345/696 atomic regions from SNP 103424 to 104024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:29,108 DEBUG Processing 680/847 atomic regions from SNP 203802 to 204402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,120 DEBUG Processing 346/724 atomic regions from SNP 103660 to 104260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,121 DEBUG Processing 395/740 atomic regions from SNP 118485 to 119085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,381 DEBUG Processing 346/696 atomic regions from SNP 103724 to 104324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:29,405 DEBUG Processing 396/740 atomic regions from SNP 118785 to 119385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,407 DEBUG Processing 347/724 atomic regions from SNP 103960 to 104560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,442 DEBUG Processing 681/847 atomic regions from SNP 204102 to 204702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,663 DEBUG Processing 347/696 atomic regions from SNP 104024 to 104624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:29,687 DEBUG Processing 397/740 atomic regions from SNP 119085 to 119685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,690 DEBUG Processing 348/724 atomic regions from SNP 104260 to 104860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,767 DEBUG Processing 682/847 atomic regions from SNP 204402 to 205002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,943 DEBUG Processing 348/696 atomic regions from SNP 104324 to 104924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:29,967 DEBUG Processing 398/740 atomic regions from SNP 119385 to 119985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,970 DEBUG Processing 349/724 atomic regions from SNP 104560 to 105160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,092 DEBUG Processing 683/847 atomic regions from SNP 204702 to 205302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,220 DEBUG Processing 349/696 atomic regions from SNP 104624 to 105224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:30,242 DEBUG Processing 399/740 atomic regions from SNP 119685 to 120285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,245 DEBUG Processing 350/724 atomic regions from SNP 104860 to 105460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,426 DEBUG Processing 684/847 atomic regions from SNP 205002 to 205602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,492 DEBUG Processing 350/696 atomic regions from SNP 104924 to 105524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:30,511 DEBUG Processing 400/740 atomic regions from SNP 119985 to 120585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,517 DEBUG Processing 351/724 atomic regions from SNP 105160 to 105760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,757 DEBUG Processing 685/847 atomic regions from SNP 205302 to 205902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,774 DEBUG Processing 351/696 atomic regions from SNP 105224 to 105824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:30,796 DEBUG Processing 401/740 atomic regions from SNP 120285 to 120885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,813 DEBUG Processing 352/724 atomic regions from SNP 105460 to 106060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,061 DEBUG Processing 352/696 atomic regions from SNP 105524 to 106124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:31,070 DEBUG Processing 686/847 atomic regions from SNP 205602 to 206202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,081 DEBUG Processing 402/740 atomic regions from SNP 120585 to 121185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,095 DEBUG Processing 353/724 atomic regions from SNP 105760 to 106360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,346 DEBUG Processing 353/696 atomic regions from SNP 105824 to 106424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:31,362 DEBUG Processing 403/740 atomic regions from SNP 120885 to 121485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,374 DEBUG Processing 687/847 atomic regions from SNP 205902 to 206502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,375 DEBUG Processing 354/724 atomic regions from SNP 106060 to 106660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,628 DEBUG Processing 354/696 atomic regions from SNP 106124 to 106724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:31,644 DEBUG Processing 404/740 atomic regions from SNP 121185 to 121785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,657 DEBUG Processing 355/724 atomic regions from SNP 106360 to 106960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,673 DEBUG Processing 688/847 atomic regions from SNP 206202 to 206802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,922 DEBUG Processing 355/696 atomic regions from SNP 106424 to 107024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:31,939 DEBUG Processing 405/740 atomic regions from SNP 121485 to 122085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,960 DEBUG Processing 356/724 atomic regions from SNP 106660 to 107260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,989 DEBUG Processing 689/847 atomic regions from SNP 206502 to 207102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,209 DEBUG Processing 356/696 atomic regions from SNP 106724 to 107324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:32,228 DEBUG Processing 406/740 atomic regions from SNP 121785 to 122385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,250 DEBUG Processing 357/724 atomic regions from SNP 106960 to 107560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,292 DEBUG Processing 690/847 atomic regions from SNP 206802 to 207402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,389 DEBUG chr14 total SNP count: 198014 2025-01-31 09:52:32,389 DEBUG chr14 length: 124902244 2025-01-31 09:52:32,389 DEBUG ----------------------------------------- 2025-01-31 09:52:32,390 INFO Processing SNPs in chr14 2025-01-31 09:52:32,502 DEBUG Processing 357/696 atomic regions from SNP 107024 to 107624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:32,523 DEBUG Processing 407/740 atomic regions from SNP 122085 to 122685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,556 DEBUG Processing 358/724 atomic regions from SNP 107260 to 107860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,626 DEBUG Processing 691/847 atomic regions from SNP 207102 to 207702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,694 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 139), (139, 198014)] 2025-01-31 09:52:32,778 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:32,795 DEBUG Processing 358/696 atomic regions from SNP 107324 to 107924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:32,795 DEBUG Segmenting atomic regions: 2025-01-31 09:52:32,817 DEBUG Processing 408/740 atomic regions from SNP 122385 to 122985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,853 DEBUG Processing 359/724 atomic regions from SNP 107560 to 108160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,879 DEBUG Processing 1/1 atomic regions from SNP 0 to 138 for chr14 (subchromosome 1 of 2). 2025-01-31 09:52:32,884 DEBUG Unique SNPs positions in subchromosome 1: 139 2025-01-31 09:52:32,884 DEBUG Subchromosome time: 0.10580166499130428, subchromosome SNPs: 139 2025-01-31 09:52:32,933 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:32,957 DEBUG Processing 692/847 atomic regions from SNP 207402 to 208002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,090 DEBUG Processing 359/696 atomic regions from SNP 107624 to 108224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:33,114 DEBUG Processing 409/740 atomic regions from SNP 122685 to 123285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,148 DEBUG Processing 360/724 atomic regions from SNP 107860 to 108460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,288 DEBUG Processing 693/847 atomic regions from SNP 207702 to 208302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,382 DEBUG Processing 360/696 atomic regions from SNP 107924 to 108524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:33,407 DEBUG Processing 410/740 atomic regions from SNP 122985 to 123585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,441 DEBUG Processing 361/724 atomic regions from SNP 108160 to 108760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,625 DEBUG Processing 694/847 atomic regions from SNP 208002 to 208602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,675 DEBUG Processing 361/696 atomic regions from SNP 108224 to 108824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:33,700 DEBUG Processing 411/740 atomic regions from SNP 123285 to 123885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,735 DEBUG Processing 362/724 atomic regions from SNP 108460 to 109060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,962 DEBUG Processing 695/847 atomic regions from SNP 208302 to 208902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,967 DEBUG Processing 362/696 atomic regions from SNP 108524 to 109124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:33,994 DEBUG Processing 412/740 atomic regions from SNP 123585 to 124185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,028 DEBUG Processing 363/724 atomic regions from SNP 108760 to 109360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,260 DEBUG Processing 363/696 atomic regions from SNP 108824 to 109424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:34,277 DEBUG Processing 696/847 atomic regions from SNP 208602 to 209202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,288 DEBUG Processing 413/740 atomic regions from SNP 123885 to 124485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,323 DEBUG Processing 364/724 atomic regions from SNP 109060 to 109660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,555 DEBUG Processing 364/696 atomic regions from SNP 109124 to 109724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:34,582 DEBUG Processing 414/740 atomic regions from SNP 124185 to 124785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,592 DEBUG Processing 697/847 atomic regions from SNP 208902 to 209502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,616 DEBUG Processing 365/724 atomic regions from SNP 109360 to 109960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,845 DEBUG Processing 365/696 atomic regions from SNP 109424 to 110024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:34,876 DEBUG Processing 415/740 atomic regions from SNP 124485 to 125085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,905 DEBUG Processing 698/847 atomic regions from SNP 209202 to 209802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,910 DEBUG Processing 366/724 atomic regions from SNP 109660 to 110260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,138 DEBUG Processing 366/696 atomic regions from SNP 109724 to 110324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:35,169 DEBUG Processing 416/740 atomic regions from SNP 124785 to 125385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,207 DEBUG Processing 367/724 atomic regions from SNP 109960 to 110560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,221 DEBUG Processing 699/847 atomic regions from SNP 209502 to 210102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,449 DEBUG Processing 367/696 atomic regions from SNP 110024 to 110624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:35,463 DEBUG Processing 417/740 atomic regions from SNP 125085 to 125685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,503 DEBUG Processing 368/724 atomic regions from SNP 110260 to 110860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,531 DEBUG Processing 700/847 atomic regions from SNP 209802 to 210402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,742 DEBUG Processing 368/696 atomic regions from SNP 110324 to 110924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:35,767 DEBUG Processing 418/740 atomic regions from SNP 125385 to 125985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,797 DEBUG Processing 369/724 atomic regions from SNP 110560 to 111160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,842 DEBUG Processing 701/847 atomic regions from SNP 210102 to 210702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,033 DEBUG Processing 369/696 atomic regions from SNP 110624 to 111224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:36,076 DEBUG Processing 419/740 atomic regions from SNP 125685 to 126285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,111 DEBUG Processing 370/724 atomic regions from SNP 110860 to 111460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,177 DEBUG Processing 702/847 atomic regions from SNP 210402 to 211002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,327 DEBUG Processing 370/696 atomic regions from SNP 110924 to 111524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:36,395 DEBUG Processing 420/740 atomic regions from SNP 125985 to 126585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,442 DEBUG Processing 371/724 atomic regions from SNP 111160 to 111760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,517 DEBUG Processing 703/847 atomic regions from SNP 210702 to 211302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,617 DEBUG Processing 371/696 atomic regions from SNP 111224 to 111824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:36,714 DEBUG Processing 421/740 atomic regions from SNP 126285 to 126885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,769 DEBUG Processing 372/724 atomic regions from SNP 111460 to 112060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,867 DEBUG Processing 704/847 atomic regions from SNP 211002 to 211602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,909 DEBUG Processing 372/696 atomic regions from SNP 111524 to 112124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:37,007 DEBUG Processing 422/740 atomic regions from SNP 126585 to 127185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,101 DEBUG Processing 373/724 atomic regions from SNP 111760 to 112360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,198 DEBUG Processing 373/696 atomic regions from SNP 111824 to 112424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:37,214 DEBUG Processing 705/847 atomic regions from SNP 211302 to 211902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,300 DEBUG Processing 423/740 atomic regions from SNP 126885 to 127485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,437 DEBUG Processing 374/724 atomic regions from SNP 112060 to 112660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,493 DEBUG Processing 374/696 atomic regions from SNP 112124 to 112724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:37,565 DEBUG Processing 706/847 atomic regions from SNP 211602 to 212202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,606 DEBUG Processing 424/740 atomic regions from SNP 127185 to 127785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,766 DEBUG Processing 375/724 atomic regions from SNP 112360 to 112960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,784 DEBUG Processing 375/696 atomic regions from SNP 112424 to 113024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:37,905 DEBUG Processing 707/847 atomic regions from SNP 211902 to 212502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,906 DEBUG Processing 425/740 atomic regions from SNP 127485 to 128085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,078 DEBUG Processing 376/696 atomic regions from SNP 112724 to 113324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:38,100 DEBUG Processing 376/724 atomic regions from SNP 112660 to 113260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,202 DEBUG Processing 426/740 atomic regions from SNP 127785 to 128385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,239 DEBUG Processing 708/847 atomic regions from SNP 212202 to 212802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,373 DEBUG Processing 377/696 atomic regions from SNP 113024 to 113624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:38,429 DEBUG Processing 377/724 atomic regions from SNP 112960 to 113560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,503 DEBUG Processing 427/740 atomic regions from SNP 128085 to 128685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,566 DEBUG Processing 709/847 atomic regions from SNP 212502 to 213102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,663 DEBUG Processing 378/696 atomic regions from SNP 113324 to 113924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:38,740 DEBUG Processing 378/724 atomic regions from SNP 113260 to 113860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,818 DEBUG Processing 428/740 atomic regions from SNP 128385 to 128985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,879 DEBUG Processing 710/847 atomic regions from SNP 212802 to 213402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,953 DEBUG Processing 379/696 atomic regions from SNP 113624 to 114224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:39,055 DEBUG Processing 379/724 atomic regions from SNP 113560 to 114160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,129 DEBUG Processing 429/740 atomic regions from SNP 128685 to 129285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,196 DEBUG Processing 711/847 atomic regions from SNP 213102 to 213702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,246 DEBUG Processing 380/696 atomic regions from SNP 113924 to 114524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:39,394 DEBUG Processing 380/724 atomic regions from SNP 113860 to 114460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,422 DEBUG Processing 430/740 atomic regions from SNP 128985 to 129585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,515 DEBUG Processing 712/847 atomic regions from SNP 213402 to 214002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,539 DEBUG Processing 381/696 atomic regions from SNP 114224 to 114824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:39,727 DEBUG Processing 381/724 atomic regions from SNP 114160 to 114760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,735 DEBUG Processing 431/740 atomic regions from SNP 129285 to 129885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,818 DEBUG Processing 382/696 atomic regions from SNP 114524 to 115124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:39,818 DEBUG Processing 713/847 atomic regions from SNP 213702 to 214302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,032 DEBUG Processing 432/740 atomic regions from SNP 129585 to 130185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,036 DEBUG Processing 382/724 atomic regions from SNP 114460 to 115060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,102 DEBUG Processing 383/696 atomic regions from SNP 114824 to 115424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:40,118 DEBUG Processing 714/847 atomic regions from SNP 214002 to 214602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,318 DEBUG Processing 383/724 atomic regions from SNP 114760 to 115360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,325 DEBUG Processing 433/740 atomic regions from SNP 129885 to 130485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,377 DEBUG Processing 384/696 atomic regions from SNP 115124 to 115724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:40,415 DEBUG Processing 715/847 atomic regions from SNP 214302 to 214902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,613 DEBUG Processing 384/724 atomic regions from SNP 115060 to 115660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,628 DEBUG Processing 434/740 atomic regions from SNP 130185 to 130785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,654 DEBUG Processing 385/696 atomic regions from SNP 115424 to 116024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:40,712 DEBUG Processing 716/847 atomic regions from SNP 214602 to 215202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,915 DEBUG Processing 385/724 atomic regions from SNP 115360 to 115960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,926 DEBUG Processing 435/740 atomic regions from SNP 130485 to 131085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,927 DEBUG Processing 386/696 atomic regions from SNP 115724 to 116324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:41,009 DEBUG Processing 717/847 atomic regions from SNP 214902 to 215502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,195 DEBUG Processing 387/696 atomic regions from SNP 116024 to 116624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:41,223 DEBUG Processing 436/740 atomic regions from SNP 130785 to 131385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,225 DEBUG Processing 386/724 atomic regions from SNP 115660 to 116260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,297 DEBUG Processing 718/847 atomic regions from SNP 215202 to 215802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,461 DEBUG Processing 388/696 atomic regions from SNP 116324 to 116924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:41,511 DEBUG Processing 437/740 atomic regions from SNP 131085 to 131685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,534 DEBUG Processing 387/724 atomic regions from SNP 115960 to 116560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,604 DEBUG Processing 719/847 atomic regions from SNP 215502 to 216102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,746 DEBUG Processing 389/696 atomic regions from SNP 116624 to 117224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:41,792 DEBUG Processing 438/740 atomic regions from SNP 131385 to 131985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,819 DEBUG Processing 388/724 atomic regions from SNP 116260 to 116860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,910 DEBUG Processing 720/847 atomic regions from SNP 215802 to 216402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,025 DEBUG Processing 390/696 atomic regions from SNP 116924 to 117524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:42,074 DEBUG Processing 439/740 atomic regions from SNP 131685 to 132285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,099 DEBUG Processing 389/724 atomic regions from SNP 116560 to 117160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,234 DEBUG Processing 721/847 atomic regions from SNP 216102 to 216702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,302 DEBUG Processing 391/696 atomic regions from SNP 117224 to 117824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:42,352 DEBUG Processing 440/740 atomic regions from SNP 131985 to 132585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,377 DEBUG Processing 390/724 atomic regions from SNP 116860 to 117460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,571 DEBUG Processing 722/847 atomic regions from SNP 216402 to 217002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,596 DEBUG Processing 392/696 atomic regions from SNP 117524 to 118124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:42,646 DEBUG Processing 441/740 atomic regions from SNP 132285 to 132885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,672 DEBUG Processing 391/724 atomic regions from SNP 117160 to 117760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,888 DEBUG Processing 723/847 atomic regions from SNP 216702 to 217302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,894 DEBUG Processing 393/696 atomic regions from SNP 117824 to 118424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:42,950 DEBUG Processing 442/740 atomic regions from SNP 132585 to 133185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,970 DEBUG Processing 392/724 atomic regions from SNP 117460 to 118060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,180 DEBUG Processing 394/696 atomic regions from SNP 118124 to 118724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:43,195 DEBUG Processing 724/847 atomic regions from SNP 217002 to 217602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,256 DEBUG Processing 393/724 atomic regions from SNP 117760 to 118360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,267 DEBUG Processing 443/740 atomic regions from SNP 132885 to 133485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,463 DEBUG Processing 395/696 atomic regions from SNP 118424 to 119024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:43,498 DEBUG Processing 725/847 atomic regions from SNP 217302 to 217902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,538 DEBUG Processing 394/724 atomic regions from SNP 118060 to 118660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,585 DEBUG Processing 444/740 atomic regions from SNP 133185 to 133785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,741 DEBUG Processing 396/696 atomic regions from SNP 118724 to 119324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:43,814 DEBUG Processing 726/847 atomic regions from SNP 217602 to 218202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,814 DEBUG Processing 395/724 atomic regions from SNP 118360 to 118960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,891 DEBUG Processing 445/740 atomic regions from SNP 133485 to 134085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,017 DEBUG Processing 397/696 atomic regions from SNP 119024 to 119624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:44,116 DEBUG Processing 396/724 atomic regions from SNP 118660 to 119260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,161 DEBUG Processing 727/847 atomic regions from SNP 217902 to 218502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,218 DEBUG Processing 446/740 atomic regions from SNP 133785 to 134385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,306 DEBUG Processing 398/696 atomic regions from SNP 119324 to 119924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:44,406 DEBUG Processing 397/724 atomic regions from SNP 118960 to 119560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,468 DEBUG Processing 728/847 atomic regions from SNP 218202 to 218802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,537 DEBUG Processing 447/740 atomic regions from SNP 134085 to 134685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,586 DEBUG Processing 399/696 atomic regions from SNP 119624 to 120224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:44,690 DEBUG Processing 398/724 atomic regions from SNP 119260 to 119860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,801 DEBUG Processing 729/847 atomic regions from SNP 218502 to 219102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,855 DEBUG Processing 448/740 atomic regions from SNP 134385 to 134985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,870 DEBUG Processing 400/696 atomic regions from SNP 119924 to 120524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:44,997 DEBUG Processing 399/724 atomic regions from SNP 119560 to 120160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,136 DEBUG Processing 730/847 atomic regions from SNP 218802 to 219402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,167 DEBUG Processing 401/696 atomic regions from SNP 120224 to 120824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:45,183 DEBUG Processing 449/740 atomic regions from SNP 134685 to 135285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,328 DEBUG Processing 400/724 atomic regions from SNP 119860 to 120460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,459 DEBUG Processing 731/847 atomic regions from SNP 219102 to 219702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,464 DEBUG Processing 402/696 atomic regions from SNP 120524 to 121124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:45,513 DEBUG Processing 450/740 atomic regions from SNP 134985 to 135585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,618 DEBUG Processing 401/724 atomic regions from SNP 120160 to 120760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,762 DEBUG Processing 403/696 atomic regions from SNP 120824 to 121424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:45,775 DEBUG Processing 732/847 atomic regions from SNP 219402 to 220002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,843 DEBUG Processing 451/740 atomic regions from SNP 135285 to 135885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,910 DEBUG Processing 402/724 atomic regions from SNP 120460 to 121060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,057 DEBUG Processing 404/696 atomic regions from SNP 121124 to 121724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:46,086 DEBUG Processing 733/847 atomic regions from SNP 219702 to 220302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,170 DEBUG Processing 452/740 atomic regions from SNP 135585 to 136185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,206 DEBUG Processing 403/724 atomic regions from SNP 120760 to 121360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,348 DEBUG Processing 405/696 atomic regions from SNP 121424 to 122024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:46,397 DEBUG Processing 734/847 atomic regions from SNP 220002 to 220602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,501 DEBUG Processing 453/740 atomic regions from SNP 135885 to 136485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,503 DEBUG Processing 404/724 atomic regions from SNP 121060 to 121660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,640 DEBUG Processing 406/696 atomic regions from SNP 121724 to 122324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:46,711 DEBUG Processing 735/847 atomic regions from SNP 220302 to 220902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,800 DEBUG Processing 405/724 atomic regions from SNP 121360 to 121960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,831 DEBUG Processing 454/740 atomic regions from SNP 136185 to 136785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,932 DEBUG Processing 407/696 atomic regions from SNP 122024 to 122624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:47,026 DEBUG Processing 736/847 atomic regions from SNP 220602 to 221202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,096 DEBUG Processing 406/724 atomic regions from SNP 121660 to 122260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,162 DEBUG Processing 455/740 atomic regions from SNP 136485 to 137085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,221 DEBUG Processing 408/696 atomic regions from SNP 122324 to 122924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:47,340 DEBUG Processing 737/847 atomic regions from SNP 220902 to 221502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,393 DEBUG Processing 407/724 atomic regions from SNP 121960 to 122560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,480 DEBUG Processing 456/740 atomic regions from SNP 136785 to 137385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,524 DEBUG Processing 409/696 atomic regions from SNP 122624 to 123224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:47,656 DEBUG Processing 738/847 atomic regions from SNP 221202 to 221802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,687 DEBUG Processing 408/724 atomic regions from SNP 122260 to 122860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,774 DEBUG Processing 457/740 atomic regions from SNP 137085 to 137685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,817 DEBUG Processing 410/696 atomic regions from SNP 122924 to 123524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:47,980 DEBUG Processing 739/847 atomic regions from SNP 221502 to 222102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,989 DEBUG Processing 409/724 atomic regions from SNP 122560 to 123160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,071 DEBUG Processing 458/740 atomic regions from SNP 137385 to 137985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,110 DEBUG Processing 411/696 atomic regions from SNP 123224 to 123824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:48,289 DEBUG Processing 410/724 atomic regions from SNP 122860 to 123460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,294 DEBUG Processing 740/847 atomic regions from SNP 221802 to 222402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,366 DEBUG Processing 459/740 atomic regions from SNP 137685 to 138285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,398 DEBUG Processing 412/696 atomic regions from SNP 123524 to 124124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:48,592 DEBUG Processing 411/724 atomic regions from SNP 123160 to 123760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,614 DEBUG Processing 741/847 atomic regions from SNP 222102 to 222702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,679 DEBUG Processing 460/740 atomic regions from SNP 137985 to 138585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,711 DEBUG Processing 413/696 atomic regions from SNP 123824 to 124424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:48,888 DEBUG Processing 412/724 atomic regions from SNP 123460 to 124060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,926 DEBUG Processing 742/847 atomic regions from SNP 222402 to 223002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,985 DEBUG Processing 461/740 atomic regions from SNP 138285 to 138885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,029 DEBUG Processing 414/696 atomic regions from SNP 124124 to 124724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:49,188 DEBUG Processing 413/724 atomic regions from SNP 123760 to 124360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,239 DEBUG Processing 743/847 atomic regions from SNP 222702 to 223302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,280 DEBUG Processing 462/740 atomic regions from SNP 138585 to 139185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,330 DEBUG Processing 415/696 atomic regions from SNP 124424 to 125024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:49,499 DEBUG Processing 414/724 atomic regions from SNP 124060 to 124660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,554 DEBUG Processing 744/847 atomic regions from SNP 223002 to 223602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,575 DEBUG Processing 463/740 atomic regions from SNP 138885 to 139485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,619 DEBUG Processing 416/696 atomic regions from SNP 124724 to 125324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:49,796 DEBUG Processing 415/724 atomic regions from SNP 124360 to 124960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,867 DEBUG Processing 745/847 atomic regions from SNP 223302 to 223902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,870 DEBUG Processing 464/740 atomic regions from SNP 139185 to 139785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,919 DEBUG Processing 417/696 atomic regions from SNP 125024 to 125624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:50,092 DEBUG Processing 416/724 atomic regions from SNP 124660 to 125260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,168 DEBUG Processing 465/740 atomic regions from SNP 139485 to 140085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,182 DEBUG Processing 746/847 atomic regions from SNP 223602 to 224202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,231 DEBUG Processing 418/696 atomic regions from SNP 125324 to 125924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:50,387 DEBUG Processing 417/724 atomic regions from SNP 124960 to 125560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,463 DEBUG Processing 466/740 atomic regions from SNP 139785 to 140385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,496 DEBUG Processing 747/847 atomic regions from SNP 223902 to 224502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,524 DEBUG Processing 419/696 atomic regions from SNP 125624 to 126224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:50,678 DEBUG Processing 418/724 atomic regions from SNP 125260 to 125860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,750 DEBUG Processing 467/740 atomic regions from SNP 140085 to 140685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,801 DEBUG Processing 748/847 atomic regions from SNP 224202 to 224802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,827 DEBUG Processing 420/696 atomic regions from SNP 125924 to 126524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:50,969 DEBUG Processing 419/724 atomic regions from SNP 125560 to 126160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,035 DEBUG Processing 468/740 atomic regions from SNP 140385 to 140985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,108 DEBUG Processing 749/847 atomic regions from SNP 224502 to 225102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,123 DEBUG Processing 421/696 atomic regions from SNP 126224 to 126824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:51,259 DEBUG Processing 420/724 atomic regions from SNP 125860 to 126460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,320 DEBUG Processing 469/740 atomic regions from SNP 140685 to 141285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,409 DEBUG Processing 750/847 atomic regions from SNP 224802 to 225402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,436 DEBUG Processing 422/696 atomic regions from SNP 126524 to 127124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:51,544 DEBUG Processing 421/724 atomic regions from SNP 126160 to 126760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,605 DEBUG Processing 470/740 atomic regions from SNP 140985 to 141585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,712 DEBUG Processing 751/847 atomic regions from SNP 225102 to 225702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,738 DEBUG Processing 423/696 atomic regions from SNP 126824 to 127424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:51,827 DEBUG Processing 422/724 atomic regions from SNP 126460 to 127060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,902 DEBUG Processing 471/740 atomic regions from SNP 141285 to 141885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,012 DEBUG Processing 752/847 atomic regions from SNP 225402 to 226002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,016 DEBUG Processing 424/696 atomic regions from SNP 127124 to 127724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:52,112 DEBUG Processing 423/724 atomic regions from SNP 126760 to 127360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,194 DEBUG Processing 472/740 atomic regions from SNP 141585 to 142185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,296 DEBUG Processing 425/696 atomic regions from SNP 127424 to 128024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:52,315 DEBUG Processing 753/847 atomic regions from SNP 225702 to 226302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,398 DEBUG Processing 424/724 atomic regions from SNP 127060 to 127660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,489 DEBUG Processing 473/740 atomic regions from SNP 141885 to 142485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,582 DEBUG Processing 426/696 atomic regions from SNP 127724 to 128324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:52,617 DEBUG Processing 754/847 atomic regions from SNP 226002 to 226602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,680 DEBUG Processing 425/724 atomic regions from SNP 127360 to 127960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,775 DEBUG Processing 474/740 atomic regions from SNP 142185 to 142785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,860 DEBUG Processing 427/696 atomic regions from SNP 128024 to 128624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:52,917 DEBUG Processing 755/847 atomic regions from SNP 226302 to 226902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,961 DEBUG Processing 426/724 atomic regions from SNP 127660 to 128260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,054 DEBUG Processing 475/740 atomic regions from SNP 142485 to 143085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,164 DEBUG Processing 428/696 atomic regions from SNP 128324 to 128924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:53,213 DEBUG Processing 756/847 atomic regions from SNP 226602 to 227202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:53,239 DEBUG Processing 427/724 atomic regions from SNP 127960 to 128560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,324 DEBUG Processing 476/740 atomic regions from SNP 142785 to 143385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,467 DEBUG Processing 429/696 atomic regions from SNP 128624 to 129224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:53,504 DEBUG Processing 757/847 atomic regions from SNP 226902 to 227502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:53,510 DEBUG Processing 428/724 atomic regions from SNP 128260 to 128860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,590 DEBUG Processing 477/740 atomic regions from SNP 143085 to 143685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,745 DEBUG Processing 430/696 atomic regions from SNP 128924 to 129524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:53,780 DEBUG Processing 429/724 atomic regions from SNP 128560 to 129160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,800 DEBUG Processing 758/847 atomic regions from SNP 227202 to 227802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:53,854 DEBUG Processing 478/740 atomic regions from SNP 143385 to 143985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,036 DEBUG Processing 431/696 atomic regions from SNP 129224 to 129824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:54,049 DEBUG Processing 430/724 atomic regions from SNP 128860 to 129460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,103 DEBUG Processing 759/847 atomic regions from SNP 227502 to 228102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:54,118 DEBUG Processing 479/740 atomic regions from SNP 143685 to 144285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,323 DEBUG Processing 432/696 atomic regions from SNP 129524 to 130124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:54,337 DEBUG Processing 431/724 atomic regions from SNP 129160 to 129760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,375 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:52:54,403 DEBUG Processing 480/740 atomic regions from SNP 143985 to 144585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,413 DEBUG chr9: Signal quantile: 0.987. signal threshold: 14. Best RMSEA: 0.018 2025-01-31 09:52:54,457 DEBUG Processing 760/847 atomic regions from SNP 227802 to 228402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:54,629 DEBUG Processing 433/696 atomic regions from SNP 129824 to 130424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:54,643 DEBUG Processing 432/724 atomic regions from SNP 129460 to 130060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,698 DEBUG Processing 481/740 atomic regions from SNP 144285 to 144885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,800 DEBUG Processing 761/847 atomic regions from SNP 228102 to 228702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:54,949 DEBUG Processing 433/724 atomic regions from SNP 129760 to 130360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,952 DEBUG Processing 434/696 atomic regions from SNP 130124 to 130724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:54,992 DEBUG Processing 482/740 atomic regions from SNP 144585 to 145185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,142 DEBUG Processing 762/847 atomic regions from SNP 228402 to 229002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:55,240 DEBUG Processing 435/696 atomic regions from SNP 130424 to 131024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:55,267 DEBUG Processing 434/724 atomic regions from SNP 130060 to 130660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,276 DEBUG Processing 483/740 atomic regions from SNP 144885 to 145485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,453 DEBUG Processing 763/847 atomic regions from SNP 228702 to 229302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:55,521 DEBUG Processing 436/696 atomic regions from SNP 130724 to 131324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:55,563 DEBUG Processing 435/724 atomic regions from SNP 130360 to 130960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,570 DEBUG Processing 484/740 atomic regions from SNP 145185 to 145785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,756 DEBUG Processing 764/847 atomic regions from SNP 229002 to 229602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:55,829 DEBUG Processing 437/696 atomic regions from SNP 131024 to 131624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:55,846 DEBUG Processing 436/724 atomic regions from SNP 130660 to 131260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,850 DEBUG Processing 485/740 atomic regions from SNP 145485 to 146085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,054 DEBUG Processing 765/847 atomic regions from SNP 229302 to 229902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,126 DEBUG Processing 438/696 atomic regions from SNP 131324 to 131924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:56,127 DEBUG Processing 437/724 atomic regions from SNP 130960 to 131560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,130 DEBUG Processing 486/740 atomic regions from SNP 145785 to 146385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,351 DEBUG Processing 766/847 atomic regions from SNP 229602 to 230202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,411 DEBUG Processing 438/724 atomic regions from SNP 131260 to 131860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,412 DEBUG Processing 487/740 atomic regions from SNP 146085 to 146685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,425 DEBUG Processing 439/696 atomic regions from SNP 131624 to 132224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:56,649 DEBUG Processing 767/847 atomic regions from SNP 229902 to 230502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,690 DEBUG Processing 439/724 atomic regions from SNP 131560 to 132160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,691 DEBUG Processing 488/740 atomic regions from SNP 146385 to 146985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,729 DEBUG Processing 440/696 atomic regions from SNP 131924 to 132524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:56,966 DEBUG Processing 768/847 atomic regions from SNP 230202 to 230802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,983 DEBUG Processing 440/724 atomic regions from SNP 131860 to 132460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,983 DEBUG Processing 489/740 atomic regions from SNP 146685 to 147285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,018 DEBUG Processing 441/696 atomic regions from SNP 132224 to 132824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:57,083 DEBUG Segmenting atomic regions: 2025-01-31 09:52:57,168 DEBUG Processing 1/658 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,274 DEBUG Processing 490/740 atomic regions from SNP 146985 to 147585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,278 DEBUG Processing 769/847 atomic regions from SNP 230502 to 231102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:57,280 DEBUG Processing 441/724 atomic regions from SNP 132160 to 132760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,302 DEBUG Processing 442/696 atomic regions from SNP 132524 to 133124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:57,424 DEBUG Processing 2/658 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,563 DEBUG Processing 491/740 atomic regions from SNP 147285 to 147885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,571 DEBUG Processing 442/724 atomic regions from SNP 132460 to 133060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,584 DEBUG Processing 443/696 atomic regions from SNP 132824 to 133424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:57,601 DEBUG Processing 770/847 atomic regions from SNP 230802 to 231402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:57,688 DEBUG Processing 3/658 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,852 DEBUG Processing 492/740 atomic regions from SNP 147585 to 148185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,869 DEBUG Processing 443/724 atomic regions from SNP 132760 to 133360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,875 DEBUG Processing 444/696 atomic regions from SNP 133124 to 133724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:57,929 DEBUG Processing 771/847 atomic regions from SNP 231102 to 231702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:57,971 DEBUG Processing 4/658 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,152 DEBUG Processing 493/740 atomic regions from SNP 147885 to 148485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,175 DEBUG Processing 444/724 atomic regions from SNP 133060 to 133660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,175 DEBUG Processing 445/696 atomic regions from SNP 133424 to 134024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:58,274 DEBUG Processing 5/658 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,277 DEBUG Processing 772/847 atomic regions from SNP 231402 to 232002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:58,458 DEBUG Processing 494/740 atomic regions from SNP 148185 to 148785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,469 DEBUG Processing 446/696 atomic regions from SNP 133724 to 134324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:58,471 DEBUG Processing 445/724 atomic regions from SNP 133360 to 133960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,500 DEBUG chr9 total SNP count: 216195 2025-01-31 09:52:58,500 DEBUG chr9 length: 124595110 2025-01-31 09:52:58,500 DEBUG ----------------------------------------- 2025-01-31 09:52:58,500 INFO Processing SNPs in chr9 2025-01-31 09:52:58,551 DEBUG Processing 6/658 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,604 DEBUG Processing 773/847 atomic regions from SNP 231702 to 232302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:58,710 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 216195)] 2025-01-31 09:52:58,758 DEBUG Processing 495/740 atomic regions from SNP 148485 to 149085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,768 DEBUG Processing 447/696 atomic regions from SNP 134024 to 134624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:58,775 DEBUG Processing 446/724 atomic regions from SNP 133660 to 134260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,830 DEBUG Processing 7/658 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,854 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:58,920 DEBUG Processing 774/847 atomic regions from SNP 232002 to 232602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:59,059 DEBUG Processing 496/740 atomic regions from SNP 148785 to 149385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,069 DEBUG Processing 448/696 atomic regions from SNP 134324 to 134924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:59,078 DEBUG Processing 447/724 atomic regions from SNP 133960 to 134560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,107 DEBUG Processing 8/658 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,233 DEBUG Processing 775/847 atomic regions from SNP 232302 to 232902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:59,361 DEBUG Processing 497/740 atomic regions from SNP 149085 to 149685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,371 DEBUG Processing 449/696 atomic regions from SNP 134624 to 135224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:59,382 DEBUG Processing 448/724 atomic regions from SNP 134260 to 134860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,390 DEBUG Processing 9/658 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,549 DEBUG Processing 776/847 atomic regions from SNP 232602 to 233202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:59,661 DEBUG Processing 498/740 atomic regions from SNP 149385 to 149985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,673 DEBUG Processing 450/696 atomic regions from SNP 134924 to 135524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:52:59,677 DEBUG Processing 10/658 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,688 DEBUG Processing 449/724 atomic regions from SNP 134560 to 135160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,860 DEBUG Processing 777/847 atomic regions from SNP 232902 to 233502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:59,961 DEBUG Processing 499/740 atomic regions from SNP 149685 to 150285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,962 DEBUG Processing 11/658 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,972 DEBUG Processing 451/696 atomic regions from SNP 135224 to 135824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:00,019 DEBUG Processing 450/724 atomic regions from SNP 134860 to 135460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,173 DEBUG Processing 778/847 atomic regions from SNP 233202 to 233802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,247 DEBUG Processing 12/658 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,261 DEBUG Processing 500/740 atomic regions from SNP 149985 to 150585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,271 DEBUG Processing 452/696 atomic regions from SNP 135524 to 136124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:00,339 DEBUG Processing 451/724 atomic regions from SNP 135160 to 135760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,489 DEBUG Processing 779/847 atomic regions from SNP 233502 to 234102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,530 DEBUG Processing 13/658 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,558 DEBUG Processing 501/740 atomic regions from SNP 150285 to 150885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,568 DEBUG Processing 453/696 atomic regions from SNP 135824 to 136424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:00,668 DEBUG Processing 452/724 atomic regions from SNP 135460 to 136060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,807 DEBUG Processing 780/847 atomic regions from SNP 233802 to 234402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,814 DEBUG Processing 14/658 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,855 DEBUG Processing 502/740 atomic regions from SNP 150585 to 151185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,863 DEBUG Processing 454/696 atomic regions from SNP 136124 to 136724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:01,005 DEBUG Processing 453/724 atomic regions from SNP 135760 to 136360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,100 DEBUG Processing 15/658 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,126 DEBUG Processing 781/847 atomic regions from SNP 234102 to 234702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:01,153 DEBUG Processing 503/740 atomic regions from SNP 150885 to 151485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,160 DEBUG Processing 455/696 atomic regions from SNP 136424 to 137024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:01,340 DEBUG Processing 454/724 atomic regions from SNP 136060 to 136660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,381 DEBUG Processing 16/658 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,443 DEBUG Processing 782/847 atomic regions from SNP 234402 to 235002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:01,450 DEBUG Processing 504/740 atomic regions from SNP 151185 to 151785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,455 DEBUG Processing 456/696 atomic regions from SNP 136724 to 137324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:01,641 DEBUG Processing 455/724 atomic regions from SNP 136360 to 136960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,659 DEBUG Processing 17/658 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,752 DEBUG Processing 505/740 atomic regions from SNP 151485 to 152085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,756 DEBUG Processing 457/696 atomic regions from SNP 137024 to 137624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:01,766 DEBUG Processing 783/847 atomic regions from SNP 234702 to 235302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:01,939 DEBUG Processing 18/658 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,967 DEBUG Processing 456/724 atomic regions from SNP 136660 to 137260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,053 DEBUG Processing 506/740 atomic regions from SNP 151785 to 152385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,070 DEBUG Processing 458/696 atomic regions from SNP 137324 to 137924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:02,089 DEBUG Processing 784/847 atomic regions from SNP 235002 to 235602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:02,218 DEBUG Processing 19/658 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,300 DEBUG Processing 457/724 atomic regions from SNP 136960 to 137560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,351 DEBUG Processing 507/740 atomic regions from SNP 152085 to 152685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,367 DEBUG Processing 459/696 atomic regions from SNP 137624 to 138224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:02,406 DEBUG Processing 785/847 atomic regions from SNP 235302 to 235902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:02,495 DEBUG Processing 20/658 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,639 DEBUG Processing 458/724 atomic regions from SNP 137260 to 137860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,647 DEBUG Processing 508/740 atomic regions from SNP 152385 to 152985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,664 DEBUG Processing 460/696 atomic regions from SNP 137924 to 138524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:02,726 DEBUG Processing 786/847 atomic regions from SNP 235602 to 236202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:02,773 DEBUG Processing 21/658 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,944 DEBUG Processing 509/740 atomic regions from SNP 152685 to 153285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,959 DEBUG Processing 461/696 atomic regions from SNP 138224 to 138824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:02,969 DEBUG Processing 459/724 atomic regions from SNP 137560 to 138160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,043 DEBUG Processing 787/847 atomic regions from SNP 235902 to 236502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:03,052 DEBUG Processing 22/658 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,259 DEBUG Processing 462/696 atomic regions from SNP 138524 to 139124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:03,268 DEBUG Processing 510/740 atomic regions from SNP 152985 to 153585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,295 DEBUG Processing 460/724 atomic regions from SNP 137860 to 138460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,335 DEBUG Processing 23/658 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,361 DEBUG Processing 788/847 atomic regions from SNP 236202 to 236802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:03,554 DEBUG Processing 463/696 atomic regions from SNP 138824 to 139424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:03,589 DEBUG Processing 511/740 atomic regions from SNP 153285 to 153885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,600 DEBUG Processing 461/724 atomic regions from SNP 138160 to 138760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,617 DEBUG Processing 24/658 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,678 DEBUG Processing 789/847 atomic regions from SNP 236502 to 237102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:03,848 DEBUG Processing 464/696 atomic regions from SNP 139124 to 139724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:03,885 DEBUG Processing 512/740 atomic regions from SNP 153585 to 154185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,899 DEBUG Processing 25/658 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,913 DEBUG Processing 462/724 atomic regions from SNP 138460 to 139060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,991 DEBUG Processing 790/847 atomic regions from SNP 236802 to 237402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:04,147 DEBUG Processing 465/696 atomic regions from SNP 139424 to 140024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:04,182 DEBUG Processing 26/658 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,183 DEBUG Processing 513/740 atomic regions from SNP 153885 to 154485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,216 DEBUG Processing 463/724 atomic regions from SNP 138760 to 139360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,304 DEBUG Processing 791/847 atomic regions from SNP 237102 to 237702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:04,445 DEBUG Processing 466/696 atomic regions from SNP 139724 to 140324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:04,466 DEBUG Processing 27/658 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,480 DEBUG Processing 514/740 atomic regions from SNP 154185 to 154785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,517 DEBUG Processing 464/724 atomic regions from SNP 139060 to 139660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,614 DEBUG Processing 792/847 atomic regions from SNP 237402 to 238002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:04,743 DEBUG Processing 467/696 atomic regions from SNP 140024 to 140624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:04,750 DEBUG Processing 28/658 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,777 DEBUG Processing 515/740 atomic regions from SNP 154485 to 155085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,814 DEBUG Processing 465/724 atomic regions from SNP 139360 to 139960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,925 DEBUG Processing 793/847 atomic regions from SNP 237702 to 238302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,033 DEBUG Processing 29/658 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,041 DEBUG Processing 468/696 atomic regions from SNP 140324 to 140924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:05,075 DEBUG Processing 516/740 atomic regions from SNP 154785 to 155385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,114 DEBUG Processing 466/724 atomic regions from SNP 139660 to 140260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,240 DEBUG Processing 794/847 atomic regions from SNP 238002 to 238602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,315 DEBUG Processing 30/658 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,338 DEBUG Processing 469/696 atomic regions from SNP 140624 to 141224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:05,371 DEBUG Processing 517/740 atomic regions from SNP 155085 to 155685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,412 DEBUG Processing 467/724 atomic regions from SNP 139960 to 140560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,558 DEBUG Processing 795/847 atomic regions from SNP 238302 to 238902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,594 DEBUG Processing 31/658 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,633 DEBUG Processing 470/696 atomic regions from SNP 140924 to 141524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:05,666 DEBUG Processing 518/740 atomic regions from SNP 155385 to 155985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,708 DEBUG Processing 468/724 atomic regions from SNP 140260 to 140860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,875 DEBUG Processing 796/847 atomic regions from SNP 238602 to 239202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,876 DEBUG Processing 32/658 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,927 DEBUG Processing 471/696 atomic regions from SNP 141224 to 141824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:05,959 DEBUG Processing 519/740 atomic regions from SNP 155685 to 156285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,006 DEBUG Processing 469/724 atomic regions from SNP 140560 to 141160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,160 DEBUG Processing 33/658 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,194 DEBUG Processing 797/847 atomic regions from SNP 238902 to 239502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:06,221 DEBUG Processing 472/696 atomic regions from SNP 141524 to 142124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:06,253 DEBUG Processing 520/740 atomic regions from SNP 155985 to 156585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,307 DEBUG Processing 470/724 atomic regions from SNP 140860 to 141460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,440 DEBUG Processing 34/658 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,510 DEBUG Processing 798/847 atomic regions from SNP 239202 to 239802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:06,518 DEBUG Processing 473/696 atomic regions from SNP 141824 to 142424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:06,549 DEBUG Processing 521/740 atomic regions from SNP 156285 to 156885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,605 DEBUG Processing 471/724 atomic regions from SNP 141160 to 141760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,716 DEBUG Processing 35/658 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,826 DEBUG Processing 474/696 atomic regions from SNP 142124 to 142724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:06,830 DEBUG Processing 799/847 atomic regions from SNP 239502 to 240102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:06,860 DEBUG Processing 522/740 atomic regions from SNP 156585 to 157185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,905 DEBUG Processing 472/724 atomic regions from SNP 141460 to 142060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,993 DEBUG Processing 36/658 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,127 DEBUG Processing 475/696 atomic regions from SNP 142424 to 143024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:07,151 DEBUG Processing 800/847 atomic regions from SNP 239802 to 240402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:07,172 DEBUG Processing 523/740 atomic regions from SNP 156885 to 157485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,206 DEBUG Processing 473/724 atomic regions from SNP 141760 to 142360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,268 DEBUG Processing 37/658 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,426 DEBUG Processing 476/696 atomic regions from SNP 142724 to 143324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:07,475 DEBUG Processing 524/740 atomic regions from SNP 157185 to 157785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,475 DEBUG Processing 801/847 atomic regions from SNP 240102 to 240702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:07,506 DEBUG Processing 474/724 atomic regions from SNP 142060 to 142660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,546 DEBUG Processing 38/658 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,720 DEBUG Processing 477/696 atomic regions from SNP 143024 to 143624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:07,781 DEBUG Processing 525/740 atomic regions from SNP 157485 to 158085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,797 DEBUG Processing 802/847 atomic regions from SNP 240402 to 241002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:07,810 DEBUG Processing 475/724 atomic regions from SNP 142360 to 142960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,827 DEBUG Processing 39/658 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,033 DEBUG Processing 478/696 atomic regions from SNP 143324 to 143924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:08,084 DEBUG Processing 526/740 atomic regions from SNP 157785 to 158385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:08,110 DEBUG Processing 40/658 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,115 DEBUG Processing 476/724 atomic regions from SNP 142660 to 143260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,120 DEBUG Processing 803/847 atomic regions from SNP 240702 to 241302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:08,354 DEBUG Processing 479/696 atomic regions from SNP 143624 to 144224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:08,393 DEBUG Processing 527/740 atomic regions from SNP 158085 to 158685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:08,395 DEBUG Processing 41/658 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,419 DEBUG Processing 477/724 atomic regions from SNP 142960 to 143560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,441 DEBUG Processing 804/847 atomic regions from SNP 241002 to 241602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:08,666 DEBUG Processing 480/696 atomic regions from SNP 143924 to 144524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:08,678 DEBUG Processing 42/658 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,695 DEBUG Processing 528/740 atomic regions from SNP 158385 to 158985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:08,742 DEBUG Processing 478/724 atomic regions from SNP 143260 to 143860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,761 DEBUG Processing 805/847 atomic regions from SNP 241302 to 241902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:08,962 DEBUG Processing 43/658 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,986 DEBUG Processing 481/696 atomic regions from SNP 144224 to 144824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:08,994 DEBUG Processing 529/740 atomic regions from SNP 158685 to 159285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,069 DEBUG Processing 479/724 atomic regions from SNP 143560 to 144160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,081 DEBUG Processing 806/847 atomic regions from SNP 241602 to 242202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:09,242 DEBUG Processing 44/658 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,282 DEBUG Processing 482/696 atomic regions from SNP 144524 to 145124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:09,290 DEBUG Processing 530/740 atomic regions from SNP 158985 to 159585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,370 DEBUG Processing 480/724 atomic regions from SNP 143860 to 144460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,398 DEBUG Processing 807/847 atomic regions from SNP 241902 to 242502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:09,525 DEBUG Processing 45/658 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,578 DEBUG Processing 483/696 atomic regions from SNP 144824 to 145424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:09,584 DEBUG Processing 531/740 atomic regions from SNP 159285 to 159885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,670 DEBUG Processing 481/724 atomic regions from SNP 144160 to 144760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,713 DEBUG Processing 808/847 atomic regions from SNP 242202 to 242802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:09,805 DEBUG Processing 46/658 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,877 DEBUG Processing 484/696 atomic regions from SNP 145124 to 145724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:09,879 DEBUG Processing 532/740 atomic regions from SNP 159585 to 160185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,971 DEBUG Processing 482/724 atomic regions from SNP 144460 to 145060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,029 DEBUG Processing 809/847 atomic regions from SNP 242502 to 243102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:10,086 DEBUG Processing 47/658 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,177 DEBUG Processing 533/740 atomic regions from SNP 159885 to 160485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,196 DEBUG Processing 485/696 atomic regions from SNP 145424 to 146024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:10,271 DEBUG Processing 483/724 atomic regions from SNP 144760 to 145360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,343 DEBUG Processing 810/847 atomic regions from SNP 242802 to 243402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:10,360 DEBUG Processing 48/658 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,473 DEBUG Processing 534/740 atomic regions from SNP 160185 to 160785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,508 DEBUG Processing 486/696 atomic regions from SNP 145724 to 146324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:10,570 DEBUG Processing 484/724 atomic regions from SNP 145060 to 145660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,639 DEBUG Processing 49/658 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,660 DEBUG Processing 811/847 atomic regions from SNP 243102 to 243702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:10,768 DEBUG Processing 535/740 atomic regions from SNP 160485 to 161085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,815 DEBUG Processing 487/696 atomic regions from SNP 146024 to 146624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:10,871 DEBUG Processing 485/724 atomic regions from SNP 145360 to 145960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,917 DEBUG Processing 50/658 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,977 DEBUG Processing 812/847 atomic regions from SNP 243402 to 244002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:11,063 DEBUG Processing 536/740 atomic regions from SNP 160785 to 161385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,109 DEBUG Processing 488/696 atomic regions from SNP 146324 to 146924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:11,169 DEBUG Processing 486/724 atomic regions from SNP 145660 to 146260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,195 DEBUG Processing 51/658 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,295 DEBUG Processing 813/847 atomic regions from SNP 243702 to 244302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:11,360 DEBUG Processing 537/740 atomic regions from SNP 161085 to 161685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,402 DEBUG Processing 489/696 atomic regions from SNP 146624 to 147224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:11,467 DEBUG Processing 487/724 atomic regions from SNP 145960 to 146560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,474 DEBUG Processing 52/658 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,613 DEBUG Processing 814/847 atomic regions from SNP 244002 to 244602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:11,655 DEBUG Processing 538/740 atomic regions from SNP 161385 to 161985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,695 DEBUG Processing 490/696 atomic regions from SNP 146924 to 147524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:11,756 DEBUG Processing 53/658 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,766 DEBUG Processing 488/724 atomic regions from SNP 146260 to 146860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,931 DEBUG Processing 815/847 atomic regions from SNP 244302 to 244902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:11,951 DEBUG Processing 539/740 atomic regions from SNP 161685 to 162285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,989 DEBUG Processing 491/696 atomic regions from SNP 147224 to 147824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:12,033 DEBUG Processing 54/658 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,064 DEBUG Processing 489/724 atomic regions from SNP 146560 to 147160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,247 DEBUG Processing 540/740 atomic regions from SNP 161985 to 162585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:12,248 DEBUG Processing 816/847 atomic regions from SNP 244602 to 245202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:12,286 DEBUG Processing 492/696 atomic regions from SNP 147524 to 148124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:12,313 DEBUG Processing 55/658 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,367 DEBUG Processing 490/724 atomic regions from SNP 146860 to 147460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,549 DEBUG Processing 541/740 atomic regions from SNP 162285 to 162885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:12,568 DEBUG Processing 817/847 atomic regions from SNP 244902 to 245502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:12,583 DEBUG Processing 493/696 atomic regions from SNP 147824 to 148424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:12,594 DEBUG Processing 56/658 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,664 DEBUG Processing 491/724 atomic regions from SNP 147160 to 147760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,849 DEBUG Processing 542/740 atomic regions from SNP 162585 to 163185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:12,876 DEBUG Processing 57/658 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,881 DEBUG Processing 494/696 atomic regions from SNP 148124 to 148724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:12,890 DEBUG Processing 818/847 atomic regions from SNP 245202 to 245802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:12,962 DEBUG Processing 492/724 atomic regions from SNP 147460 to 148060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,146 DEBUG Processing 543/740 atomic regions from SNP 162885 to 163485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:13,159 DEBUG Processing 58/658 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,179 DEBUG Processing 495/696 atomic regions from SNP 148424 to 149024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:13,211 DEBUG Processing 819/847 atomic regions from SNP 245502 to 246102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:13,258 DEBUG Processing 493/724 atomic regions from SNP 147760 to 148360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,441 DEBUG Processing 59/658 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,442 DEBUG Processing 544/740 atomic regions from SNP 163185 to 163785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:13,475 DEBUG Processing 496/696 atomic regions from SNP 148724 to 149324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:13,530 DEBUG Processing 820/847 atomic regions from SNP 245802 to 246402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:13,554 DEBUG Processing 494/724 atomic regions from SNP 148060 to 148660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,722 DEBUG Processing 60/658 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,738 DEBUG Processing 545/740 atomic regions from SNP 163485 to 164085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:13,769 DEBUG Processing 497/696 atomic regions from SNP 149024 to 149624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:13,846 DEBUG Processing 821/847 atomic regions from SNP 246102 to 246702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:13,854 DEBUG Processing 495/724 atomic regions from SNP 148360 to 148960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,005 DEBUG Processing 61/658 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,034 DEBUG Processing 546/740 atomic regions from SNP 163785 to 164385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,062 DEBUG Processing 498/696 atomic regions from SNP 149324 to 149924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:14,155 DEBUG Processing 496/724 atomic regions from SNP 148660 to 149260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,164 DEBUG Processing 822/847 atomic regions from SNP 246402 to 247002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:14,285 DEBUG Processing 62/658 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,326 DEBUG Processing 547/740 atomic regions from SNP 164085 to 164685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,352 DEBUG Processing 499/696 atomic regions from SNP 149624 to 150224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:14,457 DEBUG Processing 497/724 atomic regions from SNP 148960 to 149560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,482 DEBUG Processing 823/847 atomic regions from SNP 246702 to 247302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:14,585 DEBUG Processing 63/658 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,625 DEBUG Processing 548/740 atomic regions from SNP 164385 to 164985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,648 DEBUG Processing 500/696 atomic regions from SNP 149924 to 150524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:14,758 DEBUG Processing 498/724 atomic regions from SNP 149260 to 149860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,799 DEBUG Processing 824/847 atomic regions from SNP 247002 to 247602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:14,892 DEBUG Processing 64/658 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,925 DEBUG Processing 549/740 atomic regions from SNP 164685 to 165285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,945 DEBUG Processing 501/696 atomic regions from SNP 150224 to 150824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:15,059 DEBUG Processing 499/724 atomic regions from SNP 149560 to 150160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,115 DEBUG Processing 825/847 atomic regions from SNP 247302 to 247902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:15,174 DEBUG Processing 65/658 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,223 DEBUG Processing 550/740 atomic regions from SNP 164985 to 165585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,239 DEBUG Processing 502/696 atomic regions from SNP 150524 to 151124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:15,360 DEBUG Processing 500/724 atomic regions from SNP 149860 to 150460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,431 DEBUG Processing 826/847 atomic regions from SNP 247602 to 248202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:15,453 DEBUG Processing 66/658 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,519 DEBUG Processing 551/740 atomic regions from SNP 165285 to 165885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,534 DEBUG Processing 503/696 atomic regions from SNP 150824 to 151424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:15,661 DEBUG Processing 501/724 atomic regions from SNP 150160 to 150760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,733 DEBUG Processing 67/658 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,752 DEBUG Processing 827/847 atomic regions from SNP 247902 to 248502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:15,816 DEBUG Processing 552/740 atomic regions from SNP 165585 to 166185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,829 DEBUG Processing 504/696 atomic regions from SNP 151124 to 151724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:15,961 DEBUG Processing 502/724 atomic regions from SNP 150460 to 151060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,014 DEBUG Processing 68/658 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,071 DEBUG Processing 828/847 atomic regions from SNP 248202 to 248802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:16,113 DEBUG Processing 553/740 atomic regions from SNP 165885 to 166485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:16,125 DEBUG Processing 505/696 atomic regions from SNP 151424 to 152024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:16,259 DEBUG Processing 503/724 atomic regions from SNP 150760 to 151360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,289 DEBUG Processing 69/658 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,392 DEBUG Processing 829/847 atomic regions from SNP 248502 to 249102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:16,413 DEBUG Processing 554/740 atomic regions from SNP 166185 to 166785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:16,423 DEBUG Processing 506/696 atomic regions from SNP 151724 to 152324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:16,561 DEBUG Processing 504/724 atomic regions from SNP 151060 to 151660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,570 DEBUG Processing 70/658 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,713 DEBUG Processing 555/740 atomic regions from SNP 166485 to 167085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:16,718 DEBUG Processing 830/847 atomic regions from SNP 248802 to 249402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:16,721 DEBUG Processing 507/696 atomic regions from SNP 152024 to 152624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:16,864 DEBUG Processing 505/724 atomic regions from SNP 151360 to 151960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,881 DEBUG Processing 71/658 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,011 DEBUG Processing 556/740 atomic regions from SNP 166785 to 167385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,021 DEBUG Processing 508/696 atomic regions from SNP 152324 to 152924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:17,067 DEBUG Processing 831/847 atomic regions from SNP 249102 to 249702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:17,164 DEBUG Processing 506/724 atomic regions from SNP 151660 to 152260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,183 DEBUG Processing 72/658 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,313 DEBUG Processing 557/740 atomic regions from SNP 167085 to 167685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,319 DEBUG Processing 509/696 atomic regions from SNP 152624 to 153224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:17,404 DEBUG Processing 832/847 atomic regions from SNP 249402 to 250002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:17,465 DEBUG Processing 507/724 atomic regions from SNP 151960 to 152560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,484 DEBUG Processing 73/658 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,617 DEBUG Processing 510/696 atomic regions from SNP 152924 to 153524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:17,638 DEBUG Processing 558/740 atomic regions from SNP 167385 to 167985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,736 DEBUG Processing 833/847 atomic regions from SNP 249702 to 250302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:17,764 DEBUG Processing 508/724 atomic regions from SNP 152260 to 152860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,792 DEBUG Processing 74/658 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,911 DEBUG Processing 511/696 atomic regions from SNP 153224 to 153824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:17,933 DEBUG Processing 559/740 atomic regions from SNP 167685 to 168285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,057 DEBUG Processing 834/847 atomic regions from SNP 250002 to 250602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:18,067 DEBUG Processing 509/724 atomic regions from SNP 152560 to 153160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,106 DEBUG Processing 75/658 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,205 DEBUG Processing 512/696 atomic regions from SNP 153524 to 154124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:18,227 DEBUG Processing 560/740 atomic regions from SNP 167985 to 168585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,370 DEBUG Processing 510/724 atomic regions from SNP 152860 to 153460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,378 DEBUG Processing 835/847 atomic regions from SNP 250302 to 250902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:18,418 DEBUG Processing 76/658 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,499 DEBUG Processing 513/696 atomic regions from SNP 153824 to 154424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:18,522 DEBUG Processing 561/740 atomic regions from SNP 168285 to 168885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,673 DEBUG Processing 511/724 atomic regions from SNP 153160 to 153760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,697 DEBUG Processing 836/847 atomic regions from SNP 250602 to 251202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:18,731 DEBUG Processing 77/658 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,792 DEBUG Processing 514/696 atomic regions from SNP 154124 to 154724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:18,815 DEBUG Processing 562/740 atomic regions from SNP 168585 to 169185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,974 DEBUG Processing 512/724 atomic regions from SNP 153460 to 154060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,013 DEBUG Processing 837/847 atomic regions from SNP 250902 to 251502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:19,045 DEBUG Processing 78/658 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,086 DEBUG Processing 515/696 atomic regions from SNP 154424 to 155024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:19,108 DEBUG Processing 563/740 atomic regions from SNP 168885 to 169485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,274 DEBUG Processing 513/724 atomic regions from SNP 153760 to 154360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,328 DEBUG Processing 838/847 atomic regions from SNP 251202 to 251802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:19,359 DEBUG Processing 79/658 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,382 DEBUG Processing 516/696 atomic regions from SNP 154724 to 155324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:19,403 DEBUG Processing 564/740 atomic regions from SNP 169185 to 169785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,592 DEBUG Processing 514/724 atomic regions from SNP 154060 to 154660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,645 DEBUG Processing 839/847 atomic regions from SNP 251502 to 252102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:19,655 DEBUG Processing 80/658 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,700 DEBUG Processing 517/696 atomic regions from SNP 155024 to 155624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:19,701 DEBUG Processing 565/740 atomic regions from SNP 169485 to 170085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,926 DEBUG Processing 515/724 atomic regions from SNP 154360 to 154960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,942 DEBUG Processing 81/658 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,968 DEBUG Processing 840/847 atomic regions from SNP 251802 to 252402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:19,998 DEBUG Processing 566/740 atomic regions from SNP 169785 to 170385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,019 DEBUG Processing 518/696 atomic regions from SNP 155324 to 155924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:20,253 DEBUG Processing 82/658 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,259 DEBUG Processing 516/724 atomic regions from SNP 154660 to 155260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,286 DEBUG Processing 841/847 atomic regions from SNP 252102 to 252702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:20,296 DEBUG Processing 567/740 atomic regions from SNP 170085 to 170685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,332 DEBUG Processing 519/696 atomic regions from SNP 155624 to 156224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:20,566 DEBUG Processing 83/658 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,574 DEBUG Processing 517/724 atomic regions from SNP 154960 to 155560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,596 DEBUG Processing 568/740 atomic regions from SNP 170385 to 170985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,608 DEBUG Processing 842/847 atomic regions from SNP 252402 to 253002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:20,625 DEBUG Processing 520/696 atomic regions from SNP 155924 to 156524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:20,884 DEBUG Processing 84/658 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,888 DEBUG Processing 518/724 atomic regions from SNP 155260 to 155860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,897 DEBUG Processing 569/740 atomic regions from SNP 170685 to 171285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,922 DEBUG Processing 521/696 atomic regions from SNP 156224 to 156824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:20,930 DEBUG Processing 843/847 atomic regions from SNP 252702 to 253302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:21,190 DEBUG Processing 85/658 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,199 DEBUG Processing 570/740 atomic regions from SNP 170985 to 171585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:21,216 DEBUG Processing 519/724 atomic regions from SNP 155560 to 156160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,222 DEBUG Processing 522/696 atomic regions from SNP 156524 to 157124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:21,253 DEBUG Processing 844/847 atomic regions from SNP 253002 to 253602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:21,475 DEBUG Processing 86/658 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,498 DEBUG Processing 571/740 atomic regions from SNP 171285 to 171885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:21,522 DEBUG Processing 523/696 atomic regions from SNP 156824 to 157424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:21,556 DEBUG Processing 520/724 atomic regions from SNP 155860 to 156460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,582 DEBUG Processing 845/847 atomic regions from SNP 253302 to 253902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:21,753 DEBUG Processing 87/658 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,791 DEBUG Processing 572/740 atomic regions from SNP 171585 to 172185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:21,815 DEBUG Processing 524/696 atomic regions from SNP 157124 to 157724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:21,881 DEBUG Processing 521/724 atomic regions from SNP 156160 to 156760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,908 DEBUG Processing 846/847 atomic regions from SNP 253602 to 254202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:22,035 DEBUG Processing 88/658 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,086 DEBUG Processing 573/740 atomic regions from SNP 171885 to 172485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:22,110 DEBUG Processing 525/696 atomic regions from SNP 157424 to 158024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:22,193 DEBUG Processing 522/724 atomic regions from SNP 156460 to 157060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,231 DEBUG Processing 847/847 atomic regions from SNP 253902 to 254502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:22,314 DEBUG Processing 89/658 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,384 DEBUG Processing 574/740 atomic regions from SNP 172185 to 172785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:22,405 DEBUG Processing 526/696 atomic regions from SNP 157724 to 158324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:22,448 DEBUG Unique SNPs positions in subchromosome 1: 254503 2025-01-31 09:53:22,522 DEBUG Processing 523/724 atomic regions from SNP 156760 to 157360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,594 DEBUG Processing 90/658 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,682 DEBUG Processing 575/740 atomic regions from SNP 172485 to 173085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:22,700 DEBUG Processing 527/696 atomic regions from SNP 158024 to 158624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:22,832 DEBUG Processing 524/724 atomic regions from SNP 157060 to 157660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,867 DEBUG Processing 91/658 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,975 DEBUG Processing 576/740 atomic regions from SNP 172785 to 173385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:22,991 DEBUG Processing 528/696 atomic regions from SNP 158324 to 158924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:23,139 DEBUG Processing 92/658 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,157 DEBUG Processing 525/724 atomic regions from SNP 157360 to 157960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,269 DEBUG Processing 577/740 atomic regions from SNP 173085 to 173685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,284 DEBUG Processing 529/696 atomic regions from SNP 158624 to 159224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:23,417 DEBUG Processing 93/658 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,476 DEBUG Processing 526/724 atomic regions from SNP 157660 to 158260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,564 DEBUG Processing 578/740 atomic regions from SNP 173385 to 173985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,575 DEBUG Processing 530/696 atomic regions from SNP 158924 to 159524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:23,692 DEBUG Processing 94/658 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,774 DEBUG Processing 527/724 atomic regions from SNP 157960 to 158560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,865 DEBUG Processing 579/740 atomic regions from SNP 173685 to 174285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,868 DEBUG Processing 531/696 atomic regions from SNP 159224 to 159824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:23,967 DEBUG Processing 95/658 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,074 DEBUG Processing 528/724 atomic regions from SNP 158260 to 158860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,160 DEBUG Processing 580/740 atomic regions from SNP 173985 to 174585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,163 DEBUG Processing 532/696 atomic regions from SNP 159524 to 160124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:24,241 DEBUG Processing 96/658 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,372 DEBUG Processing 529/724 atomic regions from SNP 158560 to 159160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,456 DEBUG Processing 581/740 atomic regions from SNP 174285 to 174885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,459 DEBUG Processing 533/696 atomic regions from SNP 159824 to 160424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:24,516 DEBUG Processing 97/658 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,668 DEBUG Processing 530/724 atomic regions from SNP 158860 to 159460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,751 DEBUG Processing 582/740 atomic regions from SNP 174585 to 175185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,759 DEBUG Processing 534/696 atomic regions from SNP 160124 to 160724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:24,791 DEBUG Processing 98/658 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,966 DEBUG Processing 531/724 atomic regions from SNP 159160 to 159760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,979 DEBUG Segmenting atomic regions: 2025-01-31 09:53:25,045 DEBUG Processing 583/740 atomic regions from SNP 174885 to 175485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,053 DEBUG Processing 535/696 atomic regions from SNP 160424 to 161024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:25,067 DEBUG Processing 99/658 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,071 DEBUG Processing 1/719 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,265 DEBUG Processing 532/724 atomic regions from SNP 159460 to 160060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,343 DEBUG Processing 584/740 atomic regions from SNP 175185 to 175785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,348 DEBUG Processing 100/658 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,350 DEBUG Processing 536/696 atomic regions from SNP 160724 to 161324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:25,359 DEBUG Processing 2/719 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,563 DEBUG Processing 533/724 atomic regions from SNP 159760 to 160360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,630 DEBUG Processing 101/658 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,640 DEBUG Processing 585/740 atomic regions from SNP 175485 to 176085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,645 DEBUG Processing 3/719 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,645 DEBUG Processing 537/696 atomic regions from SNP 161024 to 161624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:25,861 DEBUG Processing 534/724 atomic regions from SNP 160060 to 160660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,913 DEBUG Processing 102/658 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,936 DEBUG Processing 4/719 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,937 DEBUG Processing 586/740 atomic regions from SNP 175785 to 176385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,942 DEBUG Processing 538/696 atomic regions from SNP 161324 to 161924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:26,159 DEBUG Processing 535/724 atomic regions from SNP 160360 to 160960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,193 DEBUG Processing 103/658 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,226 DEBUG Processing 5/719 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,234 DEBUG Processing 587/740 atomic regions from SNP 176085 to 176685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,238 DEBUG Processing 539/696 atomic regions from SNP 161624 to 162224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:26,463 DEBUG Processing 536/724 atomic regions from SNP 160660 to 161260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,477 DEBUG Processing 104/658 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,518 DEBUG Processing 6/719 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,531 DEBUG Processing 588/740 atomic regions from SNP 176385 to 176985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,534 DEBUG Processing 540/696 atomic regions from SNP 161924 to 162524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:26,762 DEBUG Processing 105/658 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,769 DEBUG Processing 537/724 atomic regions from SNP 160960 to 161560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,807 DEBUG Processing 7/719 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,828 DEBUG Processing 589/740 atomic regions from SNP 176685 to 177285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,831 DEBUG Processing 541/696 atomic regions from SNP 162224 to 162824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:27,062 DEBUG Processing 106/658 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,075 DEBUG Processing 538/724 atomic regions from SNP 161260 to 161860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,099 DEBUG Processing 8/719 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,125 DEBUG Processing 590/740 atomic regions from SNP 176985 to 177585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:27,128 DEBUG Processing 542/696 atomic regions from SNP 162524 to 163124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:27,374 DEBUG Processing 107/658 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,381 DEBUG Processing 539/724 atomic regions from SNP 161560 to 162160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,390 DEBUG Processing 9/719 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,421 DEBUG Processing 591/740 atomic regions from SNP 177285 to 177885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:27,424 DEBUG Processing 543/696 atomic regions from SNP 162824 to 163424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:27,659 DEBUG Processing 108/658 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,684 DEBUG Processing 10/719 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,685 DEBUG Processing 540/724 atomic regions from SNP 161860 to 162460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,717 DEBUG Processing 592/740 atomic regions from SNP 177585 to 178185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:27,720 DEBUG Processing 544/696 atomic regions from SNP 163124 to 163724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:27,942 DEBUG Processing 109/658 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,977 DEBUG Processing 11/719 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,992 DEBUG Processing 541/724 atomic regions from SNP 162160 to 162760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,015 DEBUG Processing 593/740 atomic regions from SNP 177885 to 178485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,017 DEBUG Processing 545/696 atomic regions from SNP 163424 to 164024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:28,229 DEBUG Processing 110/658 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,271 DEBUG Processing 12/719 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,299 DEBUG Processing 542/724 atomic regions from SNP 162460 to 163060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,315 DEBUG Processing 594/740 atomic regions from SNP 178185 to 178785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,324 DEBUG Processing 546/696 atomic regions from SNP 163724 to 164324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:28,530 DEBUG Processing 111/658 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,562 DEBUG Processing 13/719 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,604 DEBUG Processing 543/724 atomic regions from SNP 162760 to 163360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,611 DEBUG Processing 595/740 atomic regions from SNP 178485 to 179085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,651 DEBUG Processing 547/696 atomic regions from SNP 164024 to 164624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:28,807 DEBUG Processing 112/658 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,850 DEBUG Processing 14/719 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,908 DEBUG Processing 544/724 atomic regions from SNP 163060 to 163660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,909 DEBUG Processing 596/740 atomic regions from SNP 178785 to 179385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,960 DEBUG Processing 548/696 atomic regions from SNP 164324 to 164924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:29,081 DEBUG Processing 113/658 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,134 DEBUG Processing 15/719 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,208 DEBUG Processing 597/740 atomic regions from SNP 179085 to 179685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:29,214 DEBUG Processing 545/724 atomic regions from SNP 163360 to 163960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,253 DEBUG Processing 549/696 atomic regions from SNP 164624 to 165224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:29,360 DEBUG Processing 114/658 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,418 DEBUG Processing 16/719 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,503 DEBUG Processing 598/740 atomic regions from SNP 179385 to 179985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:29,519 DEBUG Processing 546/724 atomic regions from SNP 163660 to 164260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,545 DEBUG Processing 550/696 atomic regions from SNP 164924 to 165524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:29,635 DEBUG Processing 115/658 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,701 DEBUG Processing 17/719 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,800 DEBUG Processing 599/740 atomic regions from SNP 179685 to 180285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:29,824 DEBUG Processing 547/724 atomic regions from SNP 163960 to 164560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,839 DEBUG Processing 551/696 atomic regions from SNP 165224 to 165824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:29,912 DEBUG Processing 116/658 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,986 DEBUG Processing 18/719 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,096 DEBUG Processing 600/740 atomic regions from SNP 179985 to 180585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,129 DEBUG Processing 548/724 atomic regions from SNP 164260 to 164860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,136 DEBUG Processing 552/696 atomic regions from SNP 165524 to 166124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:30,190 DEBUG Processing 117/658 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,270 DEBUG Processing 19/719 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,392 DEBUG Processing 601/740 atomic regions from SNP 180285 to 180885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,433 DEBUG Processing 553/696 atomic regions from SNP 165824 to 166424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:30,434 DEBUG Processing 549/724 atomic regions from SNP 164560 to 165160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,468 DEBUG Processing 118/658 atomic regions from SNP 35217 to 35818 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,551 DEBUG Processing 20/719 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,687 DEBUG Processing 602/740 atomic regions from SNP 180585 to 181185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,740 DEBUG Processing 550/724 atomic regions from SNP 164860 to 165460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,747 DEBUG Processing 554/696 atomic regions from SNP 166124 to 166724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:30,749 DEBUG Processing 119/658 atomic regions from SNP 35518 to 36119 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,830 DEBUG Processing 21/719 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,978 DEBUG Processing 603/740 atomic regions from SNP 180885 to 181485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,033 DEBUG Processing 120/658 atomic regions from SNP 35819 to 36420 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,045 DEBUG Processing 551/724 atomic regions from SNP 165160 to 165760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,057 DEBUG Processing 555/696 atomic regions from SNP 166424 to 167024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:31,115 DEBUG Processing 22/719 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,271 DEBUG Processing 604/740 atomic regions from SNP 181185 to 181785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,314 DEBUG Processing 121/658 atomic regions from SNP 36120 to 36721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,352 DEBUG Processing 552/724 atomic regions from SNP 165460 to 166060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,356 DEBUG Processing 556/696 atomic regions from SNP 166724 to 167324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:31,400 DEBUG Processing 23/719 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,563 DEBUG Processing 605/740 atomic regions from SNP 181485 to 182085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,594 DEBUG Processing 122/658 atomic regions from SNP 36421 to 37022 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,653 DEBUG Processing 557/696 atomic regions from SNP 167024 to 167624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:31,658 DEBUG Processing 553/724 atomic regions from SNP 165760 to 166360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,689 DEBUG Processing 24/719 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,855 DEBUG Processing 606/740 atomic regions from SNP 181785 to 182385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,874 DEBUG Processing 123/658 atomic regions from SNP 36722 to 37323 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,951 DEBUG Processing 558/696 atomic regions from SNP 167324 to 167924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:31,965 DEBUG Processing 554/724 atomic regions from SNP 166060 to 166660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,977 DEBUG Processing 25/719 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,148 DEBUG Processing 607/740 atomic regions from SNP 182085 to 182685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,152 DEBUG Processing 124/658 atomic regions from SNP 37023 to 37624 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,247 DEBUG Processing 559/696 atomic regions from SNP 167624 to 168224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:32,269 DEBUG Processing 26/719 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,272 DEBUG Processing 555/724 atomic regions from SNP 166360 to 166960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,424 DEBUG Subchromosome time: 306.7062378859846, subchromosome SNPs: 254503 2025-01-31 09:53:32,425 DEBUG Estimated BADs: [2.09, 1.04, 6.27, 4.18, 2.09, 8.36, 2.09, 0.52, 6.27, 2.09, 1.04, 2.09, 0.52, 6.27, 0.42, 1.04, 12.53, 2.09, 8.36, 2.09, 1.04, 12.53, 4.18, 6.27, 1.04, 16.71, 4.18, 0.70, 2.09, 8.36, 2.09, 1.04, 4.18] SNP counts: [10366, 32164, 3601, 9121, 5665, 1980, 7776, 5222, 3502, 18300, 12599, 2077, 3462, 6456, 8691, 5945, 974, 3371, 12229, 21588, 15132, 1383, 10197, 6437, 2005, 1927, 7931, 5087, 2110, 1008, 6503, 14200, 5494] SNP IDs counts: [10366, 32164, 3601, 9121, 5665, 1980, 7776, 5222, 3502, 18300, 12599, 2077, 3462, 6456, 8691, 5945, 974, 3371, 12229, 21588, 15132, 1383, 10197, 6437, 2005, 1927, 7931, 5087, 2110, 1008, 6503, 14200, 5494] Critical gap: 667300bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.08Mbp, 28.40Mbp, 30.30Mbp, 35.24Mbp, 38.43Mbp, 39.46Mbp, 43.98Mbp, 47.17Mbp, 49.23Mbp, 59.41Mbp, 66.96Mbp, 68.22Mbp, 70.71Mbp, 74.24Mbp, 79.54Mbp, 83.00Mbp, 83.51Mbp, 85.33Mbp, 92.02Mbp, 103.91Mbp, 112.89Mbp, 113.61Mbp, 119.27Mbp, 122.84Mbp, 124.36Mbp, 125.42Mbp, 129.73Mbp, 133.32Mbp, 134.60Mbp, 135.13Mbp, 138.63Mbp, 146.58Mbp, 149.74Mbp] 2025-01-31 09:53:32,425 DEBUG chr6 time: 306.7067843360128 s 2025-01-31 09:53:32,429 DEBUG Processing 125/658 atomic regions from SNP 37324 to 37925 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,442 DEBUG Processing 608/740 atomic regions from SNP 182385 to 182985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,544 DEBUG Processing 560/696 atomic regions from SNP 167924 to 168524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:32,578 DEBUG Processing 556/724 atomic regions from SNP 166660 to 167260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,584 DEBUG Processing 27/719 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,669 DEBUG chr6: Fitting background model for 33 segments 2025-01-31 09:53:32,713 DEBUG Processing 126/658 atomic regions from SNP 37625 to 38226 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,738 DEBUG Processing 609/740 atomic regions from SNP 182685 to 183285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,844 DEBUG Processing 561/696 atomic regions from SNP 168224 to 168824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:32,884 DEBUG Processing 557/724 atomic regions from SNP 166960 to 167560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,890 DEBUG Processing 28/719 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,988 DEBUG Processing 127/658 atomic regions from SNP 37926 to 38527 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,031 DEBUG Processing 610/740 atomic regions from SNP 182985 to 183585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,146 DEBUG Processing 562/696 atomic regions from SNP 168524 to 169124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:33,177 DEBUG Processing 29/719 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,195 DEBUG Processing 558/724 atomic regions from SNP 167260 to 167860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,266 DEBUG Processing 128/658 atomic regions from SNP 38227 to 38828 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,325 DEBUG Processing 611/740 atomic regions from SNP 183285 to 183885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,449 DEBUG Processing 563/696 atomic regions from SNP 168824 to 169424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:33,467 DEBUG Processing 30/719 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,502 DEBUG Processing 559/724 atomic regions from SNP 167560 to 168160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,549 DEBUG Processing 129/658 atomic regions from SNP 38528 to 39129 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,622 DEBUG Processing 612/740 atomic regions from SNP 183585 to 184185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,747 DEBUG Processing 564/696 atomic regions from SNP 169124 to 169724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:33,758 DEBUG Processing 31/719 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,805 DEBUG Processing 560/724 atomic regions from SNP 167860 to 168460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,832 DEBUG Processing 130/658 atomic regions from SNP 38829 to 39430 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,916 DEBUG Processing 613/740 atomic regions from SNP 183885 to 184485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,043 DEBUG Processing 565/696 atomic regions from SNP 169424 to 170024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:34,044 DEBUG Processing 32/719 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,111 DEBUG Processing 561/724 atomic regions from SNP 168160 to 168760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,130 DEBUG Processing 131/658 atomic regions from SNP 39130 to 39731 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,205 DEBUG Processing 614/740 atomic regions from SNP 184185 to 184785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,333 DEBUG Processing 33/719 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,340 DEBUG Processing 566/696 atomic regions from SNP 169724 to 170324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:34,420 DEBUG Processing 562/724 atomic regions from SNP 168460 to 169060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,437 DEBUG Processing 132/658 atomic regions from SNP 39431 to 40032 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,502 DEBUG Processing 615/740 atomic regions from SNP 184485 to 185085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,618 DEBUG Processing 34/719 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,635 DEBUG Processing 567/696 atomic regions from SNP 170024 to 170624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:34,717 DEBUG Processing 133/658 atomic regions from SNP 39732 to 40333 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,723 DEBUG Processing 563/724 atomic regions from SNP 168760 to 169360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,800 DEBUG Processing 616/740 atomic regions from SNP 184785 to 185385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,911 DEBUG Processing 35/719 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,935 DEBUG Processing 568/696 atomic regions from SNP 170324 to 170924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:35,001 DEBUG Processing 134/658 atomic regions from SNP 40033 to 40634 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,031 DEBUG Processing 564/724 atomic regions from SNP 169060 to 169660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,097 DEBUG Processing 617/740 atomic regions from SNP 185085 to 185685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,197 DEBUG Processing 36/719 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,232 DEBUG Processing 569/696 atomic regions from SNP 170624 to 171224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:35,312 DEBUG Processing 135/658 atomic regions from SNP 40334 to 40935 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,328 DEBUG Processing 565/724 atomic regions from SNP 169360 to 169960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,395 DEBUG Processing 618/740 atomic regions from SNP 185385 to 185985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,482 DEBUG Processing 37/719 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,523 DEBUG Processing 570/696 atomic regions from SNP 170924 to 171524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:35,628 DEBUG Processing 136/658 atomic regions from SNP 40635 to 41236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,635 DEBUG Processing 566/724 atomic regions from SNP 169660 to 170260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,685 DEBUG Processing 619/740 atomic regions from SNP 185685 to 186285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,765 DEBUG Processing 38/719 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,813 DEBUG Processing 571/696 atomic regions from SNP 171224 to 171824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:35,919 DEBUG Processing 137/658 atomic regions from SNP 40936 to 41537 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,942 DEBUG Processing 567/724 atomic regions from SNP 169960 to 170560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,978 DEBUG Processing 620/740 atomic regions from SNP 185985 to 186585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:36,049 DEBUG Processing 39/719 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,105 DEBUG Processing 572/696 atomic regions from SNP 171524 to 172124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:36,227 DEBUG Processing 138/658 atomic regions from SNP 41237 to 41838 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,251 DEBUG Processing 568/724 atomic regions from SNP 170260 to 170860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,275 DEBUG Processing 621/740 atomic regions from SNP 186285 to 186885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:36,335 DEBUG Processing 40/719 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,397 DEBUG Processing 573/696 atomic regions from SNP 171824 to 172424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:36,548 DEBUG Processing 139/658 atomic regions from SNP 41538 to 42139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,560 DEBUG Processing 569/724 atomic regions from SNP 170560 to 171160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,570 DEBUG Processing 622/740 atomic regions from SNP 186585 to 187185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:36,622 DEBUG Processing 41/719 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,687 DEBUG Processing 574/696 atomic regions from SNP 172124 to 172724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:36,866 DEBUG Processing 140/658 atomic regions from SNP 41839 to 42440 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,871 DEBUG Processing 570/724 atomic regions from SNP 170860 to 171460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,873 DEBUG Processing 623/740 atomic regions from SNP 186885 to 187485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:36,909 DEBUG Processing 42/719 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,998 DEBUG Processing 575/696 atomic regions from SNP 172424 to 173024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:37,172 DEBUG Processing 624/740 atomic regions from SNP 187185 to 187785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,176 DEBUG Processing 141/658 atomic regions from SNP 42140 to 42741 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,180 DEBUG Processing 571/724 atomic regions from SNP 171160 to 171760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,200 DEBUG Processing 43/719 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,303 DEBUG Processing 576/696 atomic regions from SNP 172724 to 173324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:37,473 DEBUG Processing 625/740 atomic regions from SNP 187485 to 188085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,473 DEBUG Processing 142/658 atomic regions from SNP 42441 to 43042 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,489 DEBUG Processing 572/724 atomic regions from SNP 171460 to 172060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,492 DEBUG Processing 44/719 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,598 DEBUG Processing 577/696 atomic regions from SNP 173024 to 173624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:37,765 DEBUG Processing 143/658 atomic regions from SNP 42742 to 43343 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,774 DEBUG Processing 626/740 atomic regions from SNP 187785 to 188385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,785 DEBUG Processing 45/719 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,799 DEBUG Processing 573/724 atomic regions from SNP 171760 to 172360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,895 DEBUG Processing 578/696 atomic regions from SNP 173324 to 173924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:38,071 DEBUG Processing 144/658 atomic regions from SNP 43043 to 43644 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,073 DEBUG Processing 627/740 atomic regions from SNP 188085 to 188685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,077 DEBUG Processing 46/719 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,110 DEBUG Processing 574/724 atomic regions from SNP 172060 to 172660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,192 DEBUG Processing 579/696 atomic regions from SNP 173624 to 174224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:38,369 DEBUG Processing 47/719 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,371 DEBUG Processing 628/740 atomic regions from SNP 188385 to 188985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,388 DEBUG Processing 145/658 atomic regions from SNP 43344 to 43945 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,446 DEBUG Processing 575/724 atomic regions from SNP 172360 to 172960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,515 DEBUG Processing 580/696 atomic regions from SNP 173924 to 174524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:38,655 DEBUG Processing 48/719 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,665 DEBUG Processing 629/740 atomic regions from SNP 188685 to 189285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,691 DEBUG Processing 146/658 atomic regions from SNP 43645 to 44246 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,761 DEBUG Processing 576/724 atomic regions from SNP 172660 to 173260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,844 DEBUG Processing 581/696 atomic regions from SNP 174224 to 174824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:38,941 DEBUG Processing 49/719 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,958 DEBUG Processing 630/740 atomic regions from SNP 188985 to 189585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,968 DEBUG Processing 147/658 atomic regions from SNP 43946 to 44547 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,067 DEBUG Processing 577/724 atomic regions from SNP 172960 to 173560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,167 DEBUG Processing 582/696 atomic regions from SNP 174524 to 175124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:39,228 DEBUG Processing 50/719 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,245 DEBUG Processing 148/658 atomic regions from SNP 44247 to 44848 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,251 DEBUG Processing 631/740 atomic regions from SNP 189285 to 189885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:39,390 DEBUG Processing 578/724 atomic regions from SNP 173260 to 173860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,495 DEBUG Processing 583/696 atomic regions from SNP 174824 to 175424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:39,518 DEBUG Processing 51/719 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,528 DEBUG Processing 149/658 atomic regions from SNP 44548 to 45149 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,548 DEBUG Processing 632/740 atomic regions from SNP 189585 to 190185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:39,727 DEBUG Processing 579/724 atomic regions from SNP 173560 to 174160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,805 DEBUG Processing 52/719 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,809 DEBUG Processing 150/658 atomic regions from SNP 44849 to 45450 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,827 DEBUG Processing 584/696 atomic regions from SNP 175124 to 175724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:39,842 DEBUG Processing 633/740 atomic regions from SNP 189885 to 190485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,066 DEBUG Processing 580/724 atomic regions from SNP 173860 to 174460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,091 DEBUG Processing 151/658 atomic regions from SNP 45150 to 45751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,097 DEBUG Processing 53/719 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,139 DEBUG Processing 634/740 atomic regions from SNP 190185 to 190785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,155 DEBUG Processing 585/696 atomic regions from SNP 175424 to 176024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:40,376 DEBUG Processing 152/658 atomic regions from SNP 45451 to 46052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,391 DEBUG Processing 54/719 atomic regions from SNP 15953 to 16554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,413 DEBUG Processing 581/724 atomic regions from SNP 174160 to 174760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,438 DEBUG Processing 635/740 atomic regions from SNP 190485 to 191085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,484 DEBUG Processing 586/696 atomic regions from SNP 175724 to 176324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:40,655 DEBUG Processing 153/658 atomic regions from SNP 45752 to 46353 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,680 DEBUG Processing 55/719 atomic regions from SNP 16254 to 16855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,735 DEBUG Processing 636/740 atomic regions from SNP 190785 to 191385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,758 DEBUG Processing 582/724 atomic regions from SNP 174460 to 175060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,809 DEBUG Processing 587/696 atomic regions from SNP 176024 to 176624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:40,932 DEBUG Processing 154/658 atomic regions from SNP 46053 to 46654 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,964 DEBUG Processing 56/719 atomic regions from SNP 16555 to 17156 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,029 DEBUG Processing 637/740 atomic regions from SNP 191085 to 191685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:41,102 DEBUG Processing 583/724 atomic regions from SNP 174760 to 175360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,135 DEBUG Processing 588/696 atomic regions from SNP 176324 to 176924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:41,205 DEBUG Processing 155/658 atomic regions from SNP 46354 to 46955 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,249 DEBUG Processing 57/719 atomic regions from SNP 16856 to 17457 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,322 DEBUG Processing 638/740 atomic regions from SNP 191385 to 191985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:41,443 DEBUG Processing 584/724 atomic regions from SNP 175060 to 175660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,469 DEBUG Processing 589/696 atomic regions from SNP 176624 to 177224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:41,482 DEBUG Processing 156/658 atomic regions from SNP 46655 to 47256 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,530 DEBUG Processing 58/719 atomic regions from SNP 17157 to 17758 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,610 DEBUG Processing 639/740 atomic regions from SNP 191685 to 192285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:41,771 DEBUG Processing 157/658 atomic regions from SNP 46956 to 47557 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,771 DEBUG Processing 585/724 atomic regions from SNP 175360 to 175960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,803 DEBUG Processing 590/696 atomic regions from SNP 176924 to 177524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:41,819 DEBUG Processing 59/719 atomic regions from SNP 17458 to 18059 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,901 DEBUG Processing 640/740 atomic regions from SNP 191985 to 192585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,075 DEBUG Processing 158/658 atomic regions from SNP 47257 to 47858 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,081 DEBUG Processing 586/724 atomic regions from SNP 175660 to 176260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,109 DEBUG Processing 60/719 atomic regions from SNP 17759 to 18360 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,124 DEBUG Processing 591/696 atomic regions from SNP 177224 to 177824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:42,191 DEBUG Processing 641/740 atomic regions from SNP 192285 to 192885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,378 DEBUG Processing 159/658 atomic regions from SNP 47558 to 48159 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,391 DEBUG Processing 587/724 atomic regions from SNP 175960 to 176560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,399 DEBUG Processing 61/719 atomic regions from SNP 18060 to 18661 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,427 DEBUG Processing 592/696 atomic regions from SNP 177524 to 178124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:42,483 DEBUG Processing 642/740 atomic regions from SNP 192585 to 193185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,688 DEBUG Processing 160/658 atomic regions from SNP 47859 to 48460 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,689 DEBUG Processing 62/719 atomic regions from SNP 18361 to 18962 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,698 DEBUG Processing 588/724 atomic regions from SNP 176260 to 176860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,746 DEBUG Processing 593/696 atomic regions from SNP 177824 to 178424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:42,774 DEBUG Processing 643/740 atomic regions from SNP 192885 to 193485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,995 DEBUG Processing 63/719 atomic regions from SNP 18662 to 19263 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,009 DEBUG Processing 161/658 atomic regions from SNP 48160 to 48761 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,020 DEBUG Processing 589/724 atomic regions from SNP 176560 to 177160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,058 DEBUG Processing 594/696 atomic regions from SNP 178124 to 178724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:43,069 DEBUG Processing 644/740 atomic regions from SNP 193185 to 193785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,284 DEBUG Processing 64/719 atomic regions from SNP 18963 to 19564 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,309 DEBUG Processing 162/658 atomic regions from SNP 48461 to 49062 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,355 DEBUG Processing 590/724 atomic regions from SNP 176860 to 177460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,363 DEBUG Processing 595/696 atomic regions from SNP 178424 to 179024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:43,365 DEBUG Processing 645/740 atomic regions from SNP 193485 to 194085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,573 DEBUG Processing 65/719 atomic regions from SNP 19264 to 19865 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,591 DEBUG Processing 163/658 atomic regions from SNP 48762 to 49363 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,662 DEBUG Processing 596/696 atomic regions from SNP 178724 to 179324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:43,664 DEBUG Processing 646/740 atomic regions from SNP 193785 to 194385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,688 DEBUG Processing 591/724 atomic regions from SNP 177160 to 177760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,862 DEBUG Processing 66/719 atomic regions from SNP 19565 to 20166 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,874 DEBUG Processing 164/658 atomic regions from SNP 49063 to 49664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,959 DEBUG Processing 597/696 atomic regions from SNP 179024 to 179624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:43,961 DEBUG Processing 647/740 atomic regions from SNP 194085 to 194685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,029 DEBUG Processing 592/724 atomic regions from SNP 177460 to 178060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,152 DEBUG Processing 165/658 atomic regions from SNP 49364 to 49965 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,153 DEBUG Processing 67/719 atomic regions from SNP 19866 to 20467 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,256 DEBUG Processing 598/696 atomic regions from SNP 179324 to 179924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:44,257 DEBUG Processing 648/740 atomic regions from SNP 194385 to 194985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,359 DEBUG Processing 593/724 atomic regions from SNP 177760 to 178360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,432 DEBUG Processing 166/658 atomic regions from SNP 49665 to 50266 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,453 DEBUG Processing 68/719 atomic regions from SNP 20167 to 20768 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,552 DEBUG Processing 649/740 atomic regions from SNP 194685 to 195285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,552 DEBUG Processing 599/696 atomic regions from SNP 179624 to 180224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:44,670 DEBUG Processing 594/724 atomic regions from SNP 178060 to 178660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,710 DEBUG Processing 167/658 atomic regions from SNP 49966 to 50567 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,738 DEBUG Processing 69/719 atomic regions from SNP 20468 to 21069 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,847 DEBUG Processing 650/740 atomic regions from SNP 194985 to 195585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,848 DEBUG Processing 600/696 atomic regions from SNP 179924 to 180524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:44,981 DEBUG Processing 595/724 atomic regions from SNP 178360 to 178960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,992 DEBUG Processing 168/658 atomic regions from SNP 50267 to 50868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,025 DEBUG Processing 70/719 atomic regions from SNP 20769 to 21370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,142 DEBUG Processing 601/696 atomic regions from SNP 180224 to 180824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:45,150 DEBUG Processing 651/740 atomic regions from SNP 195285 to 195885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,274 DEBUG Processing 169/658 atomic regions from SNP 50568 to 51169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,294 DEBUG Processing 596/724 atomic regions from SNP 178660 to 179260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,311 DEBUG Processing 71/719 atomic regions from SNP 21070 to 21671 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,435 DEBUG Processing 602/696 atomic regions from SNP 180524 to 181124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:45,447 DEBUG Processing 652/740 atomic regions from SNP 195585 to 196185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,557 DEBUG Processing 170/658 atomic regions from SNP 50869 to 51470 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,601 DEBUG Processing 72/719 atomic regions from SNP 21371 to 21972 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,606 DEBUG Processing 597/724 atomic regions from SNP 178960 to 179560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,733 DEBUG Processing 603/696 atomic regions from SNP 180824 to 181424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:45,746 DEBUG Processing 653/740 atomic regions from SNP 195885 to 196485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,839 DEBUG Processing 171/658 atomic regions from SNP 51170 to 51771 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,889 DEBUG Processing 73/719 atomic regions from SNP 21672 to 22273 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,921 DEBUG Processing 598/724 atomic regions from SNP 179260 to 179860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,029 DEBUG Processing 604/696 atomic regions from SNP 181124 to 181724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:46,043 DEBUG Processing 654/740 atomic regions from SNP 196185 to 196785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,121 DEBUG Processing 172/658 atomic regions from SNP 51471 to 52072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,177 DEBUG Processing 74/719 atomic regions from SNP 21973 to 22574 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,227 DEBUG Processing 599/724 atomic regions from SNP 179560 to 180160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,323 DEBUG Processing 605/696 atomic regions from SNP 181424 to 182024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:46,335 DEBUG Processing 655/740 atomic regions from SNP 196485 to 197085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,398 DEBUG Processing 173/658 atomic regions from SNP 51772 to 52373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,457 DEBUG Processing 75/719 atomic regions from SNP 22274 to 22875 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,532 DEBUG Processing 600/724 atomic regions from SNP 179860 to 180460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,616 DEBUG Processing 606/696 atomic regions from SNP 181724 to 182324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:46,630 DEBUG Processing 656/740 atomic regions from SNP 196785 to 197385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,681 DEBUG Processing 174/658 atomic regions from SNP 52073 to 52674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,740 DEBUG Processing 76/719 atomic regions from SNP 22575 to 23176 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,835 DEBUG Processing 601/724 atomic regions from SNP 180160 to 180760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,919 DEBUG Processing 607/696 atomic regions from SNP 182024 to 182624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:46,925 DEBUG Processing 657/740 atomic regions from SNP 197085 to 197685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,966 DEBUG Processing 175/658 atomic regions from SNP 52374 to 52974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,021 DEBUG Processing 77/719 atomic regions from SNP 22876 to 23477 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,140 DEBUG Processing 602/724 atomic regions from SNP 180460 to 181060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,222 DEBUG Processing 658/740 atomic regions from SNP 197385 to 197985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:47,235 DEBUG Processing 608/696 atomic regions from SNP 182324 to 182924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:47,245 DEBUG Processing 176/658 atomic regions from SNP 52674 to 53274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,303 DEBUG Processing 78/719 atomic regions from SNP 23177 to 23778 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,443 DEBUG Processing 603/724 atomic regions from SNP 180760 to 181360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,520 DEBUG Processing 659/740 atomic regions from SNP 197685 to 198285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:47,528 DEBUG Processing 177/658 atomic regions from SNP 52974 to 53574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,544 DEBUG Processing 609/696 atomic regions from SNP 182624 to 183224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:47,590 DEBUG Processing 79/719 atomic regions from SNP 23478 to 24079 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,746 DEBUG Processing 604/724 atomic regions from SNP 181060 to 181660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,810 DEBUG Processing 178/658 atomic regions from SNP 53274 to 53874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,816 DEBUG Processing 660/740 atomic regions from SNP 197985 to 198585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:47,840 DEBUG Processing 610/696 atomic regions from SNP 182924 to 183524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:47,873 DEBUG Processing 80/719 atomic regions from SNP 23779 to 24380 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,048 DEBUG Processing 605/724 atomic regions from SNP 181360 to 181960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:48,089 DEBUG Processing 179/658 atomic regions from SNP 53574 to 54174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,114 DEBUG Processing 661/740 atomic regions from SNP 198285 to 198885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:48,136 DEBUG Processing 611/696 atomic regions from SNP 183224 to 183824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:48,157 DEBUG Processing 81/719 atomic regions from SNP 24080 to 24681 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,365 DEBUG Processing 606/724 atomic regions from SNP 181660 to 182260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:48,367 DEBUG Processing 180/658 atomic regions from SNP 53874 to 54474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,434 DEBUG Processing 612/696 atomic regions from SNP 183524 to 184124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:48,435 DEBUG Processing 662/740 atomic regions from SNP 198585 to 199185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:48,443 DEBUG Processing 82/719 atomic regions from SNP 24381 to 24982 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,648 DEBUG Processing 181/658 atomic regions from SNP 54174 to 54774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,684 DEBUG Processing 607/724 atomic regions from SNP 181960 to 182560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:48,732 DEBUG Processing 83/719 atomic regions from SNP 24682 to 25283 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,733 DEBUG Processing 613/696 atomic regions from SNP 183824 to 184424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:48,750 DEBUG Processing 663/740 atomic regions from SNP 198885 to 199485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:48,923 DEBUG Processing 182/658 atomic regions from SNP 54474 to 55074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,988 DEBUG Processing 608/724 atomic regions from SNP 182260 to 182860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:49,020 DEBUG Processing 84/719 atomic regions from SNP 24983 to 25584 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,029 DEBUG Processing 614/696 atomic regions from SNP 184124 to 184724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:49,045 DEBUG Processing 664/740 atomic regions from SNP 199185 to 199785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,196 DEBUG Processing 183/658 atomic regions from SNP 54774 to 55374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,296 DEBUG Processing 609/724 atomic regions from SNP 182560 to 183160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:49,309 DEBUG Processing 85/719 atomic regions from SNP 25284 to 25885 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,329 DEBUG Processing 615/696 atomic regions from SNP 184424 to 185024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:49,343 DEBUG Processing 665/740 atomic regions from SNP 199485 to 200085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,469 DEBUG Processing 184/658 atomic regions from SNP 55074 to 55674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,601 DEBUG Processing 86/719 atomic regions from SNP 25585 to 26186 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,608 DEBUG Processing 610/724 atomic regions from SNP 182860 to 183460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:49,626 DEBUG Processing 616/696 atomic regions from SNP 184724 to 185324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:49,664 DEBUG Processing 666/740 atomic regions from SNP 199785 to 200385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,744 DEBUG Processing 185/658 atomic regions from SNP 55374 to 55974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,891 DEBUG Processing 87/719 atomic regions from SNP 25886 to 26487 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,918 DEBUG Processing 611/724 atomic regions from SNP 183160 to 183760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:49,925 DEBUG Processing 617/696 atomic regions from SNP 185024 to 185624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:49,967 DEBUG Processing 667/740 atomic regions from SNP 200085 to 200685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:50,017 DEBUG Processing 186/658 atomic regions from SNP 55674 to 56274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,178 DEBUG Processing 88/719 atomic regions from SNP 26187 to 26788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,225 DEBUG Processing 618/696 atomic regions from SNP 185324 to 185924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:50,229 DEBUG Processing 612/724 atomic regions from SNP 183460 to 184060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:50,267 DEBUG Processing 668/740 atomic regions from SNP 200385 to 200985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:50,295 DEBUG Processing 187/658 atomic regions from SNP 55974 to 56574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,459 DEBUG Processing 89/719 atomic regions from SNP 26488 to 27089 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,525 DEBUG Processing 619/696 atomic regions from SNP 185624 to 186224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:50,561 DEBUG Processing 613/724 atomic regions from SNP 183760 to 184360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:50,564 DEBUG Processing 669/740 atomic regions from SNP 200685 to 201285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:50,575 DEBUG Processing 188/658 atomic regions from SNP 56274 to 56874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,744 DEBUG Processing 90/719 atomic regions from SNP 26789 to 27390 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,847 DEBUG Processing 620/696 atomic regions from SNP 185924 to 186524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:50,859 DEBUG Processing 189/658 atomic regions from SNP 56574 to 57174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,865 DEBUG Processing 670/740 atomic regions from SNP 200985 to 201585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:50,900 DEBUG Processing 614/724 atomic regions from SNP 184060 to 184660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:51,028 DEBUG Processing 91/719 atomic regions from SNP 27090 to 27691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,144 DEBUG Processing 190/658 atomic regions from SNP 56874 to 57474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,165 DEBUG Processing 621/696 atomic regions from SNP 186224 to 186824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:51,166 DEBUG Processing 671/740 atomic regions from SNP 201285 to 201885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,239 DEBUG Processing 615/724 atomic regions from SNP 184360 to 184960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:51,309 DEBUG Processing 92/719 atomic regions from SNP 27391 to 27992 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,423 DEBUG Processing 191/658 atomic regions from SNP 57174 to 57774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,461 DEBUG Processing 672/740 atomic regions from SNP 201585 to 202185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,469 DEBUG Processing 622/696 atomic regions from SNP 186524 to 187124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:51,566 DEBUG Processing 616/724 atomic regions from SNP 184660 to 185260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:51,593 DEBUG Processing 93/719 atomic regions from SNP 27692 to 28293 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,705 DEBUG Processing 192/658 atomic regions from SNP 57474 to 58074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,764 DEBUG Processing 673/740 atomic regions from SNP 201885 to 202485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,785 DEBUG Processing 623/696 atomic regions from SNP 186824 to 187424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:51,875 DEBUG Processing 94/719 atomic regions from SNP 27993 to 28594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,893 DEBUG Processing 617/724 atomic regions from SNP 184960 to 185560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:51,983 DEBUG Processing 193/658 atomic regions from SNP 57774 to 58374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,080 DEBUG Processing 674/740 atomic regions from SNP 202185 to 202785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,082 DEBUG Processing 624/696 atomic regions from SNP 187124 to 187724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:52,159 DEBUG Processing 95/719 atomic regions from SNP 28294 to 28895 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,226 DEBUG Processing 618/724 atomic regions from SNP 185260 to 185860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:52,259 DEBUG Processing 194/658 atomic regions from SNP 58074 to 58674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,379 DEBUG Processing 675/740 atomic regions from SNP 202485 to 203085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,381 DEBUG Processing 625/696 atomic regions from SNP 187424 to 188024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:52,447 DEBUG Processing 96/719 atomic regions from SNP 28595 to 29196 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,532 DEBUG Processing 195/658 atomic regions from SNP 58374 to 58974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,554 DEBUG Processing 619/724 atomic regions from SNP 185560 to 186160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:52,673 DEBUG Processing 676/740 atomic regions from SNP 202785 to 203385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,692 DEBUG Processing 626/696 atomic regions from SNP 187724 to 188324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:52,730 DEBUG Processing 97/719 atomic regions from SNP 28896 to 29497 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,806 DEBUG Processing 196/658 atomic regions from SNP 58674 to 59274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,892 DEBUG Processing 620/724 atomic regions from SNP 185860 to 186460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:52,966 DEBUG Processing 677/740 atomic regions from SNP 203085 to 203685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,996 DEBUG Processing 627/696 atomic regions from SNP 188024 to 188624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:53,037 DEBUG Processing 98/719 atomic regions from SNP 29197 to 29798 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,086 DEBUG Processing 197/658 atomic regions from SNP 58974 to 59574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,219 DEBUG Processing 621/724 atomic regions from SNP 186160 to 186760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:53,259 DEBUG Processing 678/740 atomic regions from SNP 203385 to 203985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:53,289 DEBUG Processing 628/696 atomic regions from SNP 188324 to 188924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:53,361 DEBUG Processing 99/719 atomic regions from SNP 29498 to 30099 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,379 DEBUG Processing 198/658 atomic regions from SNP 59274 to 59874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,527 DEBUG Processing 622/724 atomic regions from SNP 186460 to 187060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:53,556 DEBUG Processing 679/740 atomic regions from SNP 203685 to 204285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:53,585 DEBUG Processing 629/696 atomic regions from SNP 188624 to 189224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:53,659 DEBUG Processing 199/658 atomic regions from SNP 59574 to 60174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,687 DEBUG Processing 100/719 atomic regions from SNP 29799 to 30400 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,836 DEBUG Processing 623/724 atomic regions from SNP 186760 to 187360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:53,853 DEBUG Processing 680/740 atomic regions from SNP 203985 to 204585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:53,880 DEBUG Processing 630/696 atomic regions from SNP 188924 to 189524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:53,936 DEBUG Processing 200/658 atomic regions from SNP 59874 to 60474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,008 DEBUG Processing 101/719 atomic regions from SNP 30100 to 30701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,145 DEBUG Processing 624/724 atomic regions from SNP 187060 to 187660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,151 DEBUG Processing 681/740 atomic regions from SNP 204285 to 204885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:54,174 DEBUG Processing 631/696 atomic regions from SNP 189224 to 189824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:54,214 DEBUG Processing 201/658 atomic regions from SNP 60174 to 60774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,326 DEBUG Processing 102/719 atomic regions from SNP 30401 to 31002 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,450 DEBUG Processing 682/740 atomic regions from SNP 204585 to 205185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:54,453 DEBUG Processing 625/724 atomic regions from SNP 187360 to 187960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,472 DEBUG Processing 632/696 atomic regions from SNP 189524 to 190124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:54,494 DEBUG Processing 202/658 atomic regions from SNP 60474 to 61074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,646 DEBUG Processing 103/719 atomic regions from SNP 30702 to 31303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,750 DEBUG Processing 683/740 atomic regions from SNP 204885 to 205485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:54,765 DEBUG Processing 626/724 atomic regions from SNP 187660 to 188260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,773 DEBUG Processing 633/696 atomic regions from SNP 189824 to 190424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:54,777 DEBUG Processing 203/658 atomic regions from SNP 60774 to 61374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,965 DEBUG Processing 104/719 atomic regions from SNP 31003 to 31604 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,048 DEBUG Processing 684/740 atomic regions from SNP 205185 to 205785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:55,060 DEBUG Processing 204/658 atomic regions from SNP 61074 to 61674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,071 DEBUG Processing 634/696 atomic regions from SNP 190124 to 190724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:55,073 DEBUG Processing 627/724 atomic regions from SNP 187960 to 188560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:55,287 DEBUG Processing 105/719 atomic regions from SNP 31304 to 31905 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,344 DEBUG Processing 205/658 atomic regions from SNP 61374 to 61974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,346 DEBUG Processing 685/740 atomic regions from SNP 205485 to 206085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:55,369 DEBUG Processing 635/696 atomic regions from SNP 190424 to 191024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:55,381 DEBUG Processing 628/724 atomic regions from SNP 188260 to 188860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:55,605 DEBUG Processing 106/719 atomic regions from SNP 31605 to 32206 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,640 DEBUG Processing 206/658 atomic regions from SNP 61674 to 62274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,644 DEBUG Processing 686/740 atomic regions from SNP 205785 to 206385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:55,668 DEBUG Processing 636/696 atomic regions from SNP 190724 to 191324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:55,689 DEBUG Processing 629/724 atomic regions from SNP 188560 to 189160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:55,931 DEBUG Processing 107/719 atomic regions from SNP 31906 to 32507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,941 DEBUG Processing 207/658 atomic regions from SNP 61974 to 62574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,942 DEBUG Processing 687/740 atomic regions from SNP 206085 to 206685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:55,968 DEBUG Processing 637/696 atomic regions from SNP 191024 to 191624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:55,997 DEBUG Processing 630/724 atomic regions from SNP 188860 to 189460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:56,240 DEBUG Processing 208/658 atomic regions from SNP 62274 to 62874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,243 DEBUG Processing 688/740 atomic regions from SNP 206385 to 206985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:56,253 DEBUG Processing 108/719 atomic regions from SNP 32207 to 32808 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,272 DEBUG Processing 638/696 atomic regions from SNP 191324 to 191924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:56,298 DEBUG Processing 631/724 atomic regions from SNP 189160 to 189760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:56,541 DEBUG Processing 209/658 atomic regions from SNP 62574 to 63174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,542 DEBUG Processing 689/740 atomic regions from SNP 206685 to 207285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:56,563 DEBUG Processing 109/719 atomic regions from SNP 32508 to 33109 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,596 DEBUG Processing 639/696 atomic regions from SNP 191624 to 192224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:56,605 DEBUG Processing 632/724 atomic regions from SNP 189460 to 190060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:56,825 DEBUG Processing 210/658 atomic regions from SNP 62874 to 63474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,841 DEBUG Processing 690/740 atomic regions from SNP 206985 to 207585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:56,863 DEBUG Processing 110/719 atomic regions from SNP 32809 to 33410 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,894 DEBUG Processing 640/696 atomic regions from SNP 191924 to 192524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:56,910 DEBUG Processing 633/724 atomic regions from SNP 189760 to 190360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:57,111 DEBUG Processing 211/658 atomic regions from SNP 63174 to 63774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,144 DEBUG Processing 691/740 atomic regions from SNP 207285 to 207885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:57,157 DEBUG Processing 111/719 atomic regions from SNP 33110 to 33711 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,197 DEBUG Processing 641/696 atomic regions from SNP 192224 to 192824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:57,216 DEBUG Processing 634/724 atomic regions from SNP 190060 to 190660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:57,395 DEBUG Processing 212/658 atomic regions from SNP 63474 to 64074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,444 DEBUG Processing 692/740 atomic regions from SNP 207585 to 208185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:57,450 DEBUG Processing 112/719 atomic regions from SNP 33411 to 34012 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,493 DEBUG Processing 642/696 atomic regions from SNP 192524 to 193124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:57,527 DEBUG Processing 635/724 atomic regions from SNP 190360 to 190960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:57,677 DEBUG Processing 213/658 atomic regions from SNP 63774 to 64374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,742 DEBUG Processing 113/719 atomic regions from SNP 33712 to 34313 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,742 DEBUG Processing 693/740 atomic regions from SNP 207885 to 208485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:57,789 DEBUG Processing 643/696 atomic regions from SNP 192824 to 193424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:57,833 DEBUG Processing 636/724 atomic regions from SNP 190660 to 191260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:57,958 DEBUG Processing 214/658 atomic regions from SNP 64074 to 64674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,032 DEBUG Processing 114/719 atomic regions from SNP 34013 to 34614 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,040 DEBUG Processing 694/740 atomic regions from SNP 208185 to 208785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:58,083 DEBUG Processing 644/696 atomic regions from SNP 193124 to 193724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:58,139 DEBUG Processing 637/724 atomic regions from SNP 190960 to 191560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:58,238 DEBUG Processing 215/658 atomic regions from SNP 64374 to 64974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,320 DEBUG Processing 115/719 atomic regions from SNP 34314 to 34915 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,334 DEBUG Processing 695/740 atomic regions from SNP 208485 to 209085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:58,374 DEBUG Processing 645/696 atomic regions from SNP 193424 to 194024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:58,443 DEBUG Processing 638/724 atomic regions from SNP 191260 to 191860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:58,517 DEBUG Processing 216/658 atomic regions from SNP 64674 to 65274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,608 DEBUG Processing 116/719 atomic regions from SNP 34615 to 35216 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,629 DEBUG Processing 696/740 atomic regions from SNP 208785 to 209385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:58,666 DEBUG Processing 646/696 atomic regions from SNP 193724 to 194324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:58,752 DEBUG Processing 639/724 atomic regions from SNP 191560 to 192160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:58,811 DEBUG Processing 217/658 atomic regions from SNP 64974 to 65574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,899 DEBUG Processing 117/719 atomic regions from SNP 34916 to 35517 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,935 DEBUG Processing 697/740 atomic regions from SNP 209085 to 209685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:58,961 DEBUG Processing 647/696 atomic regions from SNP 194024 to 194624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:59,063 DEBUG Processing 640/724 atomic regions from SNP 191860 to 192460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:59,110 DEBUG Processing 218/658 atomic regions from SNP 65274 to 65874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,188 DEBUG Processing 118/719 atomic regions from SNP 35217 to 35818 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,234 DEBUG Processing 698/740 atomic regions from SNP 209385 to 209985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:59,254 DEBUG Processing 648/696 atomic regions from SNP 194324 to 194924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:59,369 DEBUG Processing 641/724 atomic regions from SNP 192160 to 192760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:59,412 DEBUG Processing 219/658 atomic regions from SNP 65574 to 66174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,476 DEBUG Processing 119/719 atomic regions from SNP 35518 to 36119 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,547 DEBUG Processing 649/696 atomic regions from SNP 194624 to 195224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:59,553 DEBUG Processing 699/740 atomic regions from SNP 209685 to 210285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:59,678 DEBUG Processing 642/724 atomic regions from SNP 192460 to 193060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:59,717 DEBUG Processing 220/658 atomic regions from SNP 65874 to 66474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,763 DEBUG Processing 120/719 atomic regions from SNP 35819 to 36420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,841 DEBUG Processing 650/696 atomic regions from SNP 194924 to 195524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:53:59,846 DEBUG Processing 700/740 atomic regions from SNP 209985 to 210585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:59,988 DEBUG Processing 643/724 atomic regions from SNP 192760 to 193360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:00,005 DEBUG Processing 221/658 atomic regions from SNP 66174 to 66774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,051 DEBUG Processing 121/719 atomic regions from SNP 36120 to 36721 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,136 DEBUG Processing 651/696 atomic regions from SNP 195224 to 195824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:00,139 DEBUG Processing 701/740 atomic regions from SNP 210285 to 210885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:00,285 DEBUG Processing 222/658 atomic regions from SNP 66474 to 67074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,298 DEBUG Processing 644/724 atomic regions from SNP 193060 to 193660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:00,338 DEBUG Processing 122/719 atomic regions from SNP 36421 to 37022 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,432 DEBUG Processing 652/696 atomic regions from SNP 195524 to 196124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:00,434 DEBUG Processing 702/740 atomic regions from SNP 210585 to 211185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:00,567 DEBUG Processing 223/658 atomic regions from SNP 66774 to 67374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,610 DEBUG Processing 645/724 atomic regions from SNP 193360 to 193960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:00,627 DEBUG Processing 123/719 atomic regions from SNP 36722 to 37323 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,724 DEBUG Processing 653/696 atomic regions from SNP 195824 to 196424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:00,726 DEBUG Processing 703/740 atomic regions from SNP 210885 to 211485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:00,846 DEBUG Processing 224/658 atomic regions from SNP 67074 to 67674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,919 DEBUG Processing 124/719 atomic regions from SNP 37023 to 37624 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,920 DEBUG Processing 646/724 atomic regions from SNP 193660 to 194260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:01,018 DEBUG Processing 654/696 atomic regions from SNP 196124 to 196724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:01,020 DEBUG Processing 704/740 atomic regions from SNP 211185 to 211785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:01,127 DEBUG Processing 225/658 atomic regions from SNP 67374 to 67974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,212 DEBUG Processing 125/719 atomic regions from SNP 37324 to 37925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,231 DEBUG Processing 647/724 atomic regions from SNP 193960 to 194560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:01,311 DEBUG Processing 655/696 atomic regions from SNP 196424 to 197024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:01,314 DEBUG Processing 705/740 atomic regions from SNP 211485 to 212085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:01,434 DEBUG Processing 226/658 atomic regions from SNP 67674 to 68274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,510 DEBUG Processing 126/719 atomic regions from SNP 37625 to 38226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,542 DEBUG Processing 648/724 atomic regions from SNP 194260 to 194860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:01,609 DEBUG Processing 656/696 atomic regions from SNP 196724 to 197324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:01,611 DEBUG Processing 706/740 atomic regions from SNP 211785 to 212385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:01,712 DEBUG Processing 227/658 atomic regions from SNP 67974 to 68574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,795 DEBUG Processing 127/719 atomic regions from SNP 37926 to 38527 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,876 DEBUG Processing 649/724 atomic regions from SNP 194560 to 195160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:01,904 DEBUG Processing 657/696 atomic regions from SNP 197024 to 197624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:01,905 DEBUG Processing 707/740 atomic regions from SNP 212085 to 212685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:01,989 DEBUG Processing 228/658 atomic regions from SNP 68274 to 68874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,080 DEBUG Processing 128/719 atomic regions from SNP 38227 to 38828 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,200 DEBUG Processing 658/696 atomic regions from SNP 197324 to 197924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:02,201 DEBUG Processing 708/740 atomic regions from SNP 212385 to 212985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:02,213 DEBUG Processing 650/724 atomic regions from SNP 194860 to 195460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:02,267 DEBUG Processing 229/658 atomic regions from SNP 68574 to 69174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,361 DEBUG Processing 129/719 atomic regions from SNP 38528 to 39129 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,499 DEBUG Processing 659/696 atomic regions from SNP 197624 to 198224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:02,500 DEBUG Processing 709/740 atomic regions from SNP 212685 to 213285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:02,547 DEBUG Processing 230/658 atomic regions from SNP 68874 to 69474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,560 DEBUG Processing 651/724 atomic regions from SNP 195160 to 195760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:02,643 DEBUG Processing 130/719 atomic regions from SNP 38829 to 39430 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,796 DEBUG Processing 660/696 atomic regions from SNP 197924 to 198524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:02,797 DEBUG Processing 710/740 atomic regions from SNP 212985 to 213585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:02,828 DEBUG Processing 231/658 atomic regions from SNP 69174 to 69774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,900 DEBUG Processing 652/724 atomic regions from SNP 195460 to 196060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:02,926 DEBUG Processing 131/719 atomic regions from SNP 39130 to 39731 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,092 DEBUG Processing 661/696 atomic regions from SNP 198224 to 198824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:03,093 DEBUG Processing 711/740 atomic regions from SNP 213285 to 213885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:03,107 DEBUG Processing 232/658 atomic regions from SNP 69474 to 70074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,214 DEBUG Processing 132/719 atomic regions from SNP 39431 to 40032 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,229 DEBUG Processing 653/724 atomic regions from SNP 195760 to 196360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:03,388 DEBUG Processing 233/658 atomic regions from SNP 69774 to 70374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,391 DEBUG Processing 712/740 atomic regions from SNP 213585 to 214185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:03,392 DEBUG Processing 662/696 atomic regions from SNP 198524 to 199124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:03,501 DEBUG Processing 133/719 atomic regions from SNP 39732 to 40333 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,540 DEBUG Processing 654/724 atomic regions from SNP 196060 to 196660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:03,673 DEBUG Processing 234/658 atomic regions from SNP 70074 to 70674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,690 DEBUG Processing 713/740 atomic regions from SNP 213885 to 214485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:03,691 DEBUG Processing 663/696 atomic regions from SNP 198824 to 199424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:03,790 DEBUG Processing 134/719 atomic regions from SNP 40033 to 40634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,850 DEBUG Processing 655/724 atomic regions from SNP 196360 to 196960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:03,953 DEBUG Processing 235/658 atomic regions from SNP 70374 to 70974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,989 DEBUG Processing 714/740 atomic regions from SNP 214185 to 214785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:03,990 DEBUG Processing 664/696 atomic regions from SNP 199124 to 199724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:04,077 DEBUG Processing 135/719 atomic regions from SNP 40334 to 40935 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,160 DEBUG Processing 656/724 atomic regions from SNP 196660 to 197260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:04,232 DEBUG Processing 236/658 atomic regions from SNP 70674 to 71274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,289 DEBUG Processing 715/740 atomic regions from SNP 214485 to 215085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:04,292 DEBUG Processing 665/696 atomic regions from SNP 199424 to 200024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:04,362 DEBUG Processing 136/719 atomic regions from SNP 40635 to 41236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,469 DEBUG Processing 657/724 atomic regions from SNP 196960 to 197560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:04,509 DEBUG Processing 237/658 atomic regions from SNP 70974 to 71574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,585 DEBUG Processing 716/740 atomic regions from SNP 214785 to 215385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:04,611 DEBUG Processing 666/696 atomic regions from SNP 199724 to 200324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:04,648 DEBUG Processing 137/719 atomic regions from SNP 40936 to 41537 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,777 DEBUG Processing 658/724 atomic regions from SNP 197260 to 197860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:04,785 DEBUG Processing 238/658 atomic regions from SNP 71274 to 71874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,880 DEBUG Processing 717/740 atomic regions from SNP 215085 to 215685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:04,909 DEBUG Processing 667/696 atomic regions from SNP 200024 to 200624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:04,934 DEBUG Processing 138/719 atomic regions from SNP 41237 to 41838 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,085 DEBUG Processing 659/724 atomic regions from SNP 197560 to 198160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:05,088 DEBUG Processing 239/658 atomic regions from SNP 71574 to 72174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,175 DEBUG Processing 718/740 atomic regions from SNP 215385 to 215985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:05,202 DEBUG Processing 668/696 atomic regions from SNP 200324 to 200924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:05,218 DEBUG Processing 139/719 atomic regions from SNP 41538 to 42139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,394 DEBUG Processing 660/724 atomic regions from SNP 197860 to 198460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:05,401 DEBUG Processing 240/658 atomic regions from SNP 71874 to 72474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,472 DEBUG Processing 719/740 atomic regions from SNP 215685 to 216285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:05,497 DEBUG Processing 669/696 atomic regions from SNP 200624 to 201224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:05,507 DEBUG Processing 140/719 atomic regions from SNP 41839 to 42440 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,705 DEBUG Processing 661/724 atomic regions from SNP 198160 to 198760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:05,709 DEBUG Processing 241/658 atomic regions from SNP 72174 to 72774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,773 DEBUG Processing 720/740 atomic regions from SNP 215985 to 216585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:05,799 DEBUG Processing 141/719 atomic regions from SNP 42140 to 42741 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,826 DEBUG Processing 670/696 atomic regions from SNP 200924 to 201524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:05,989 DEBUG Processing 242/658 atomic regions from SNP 72474 to 73074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,016 DEBUG Processing 662/724 atomic regions from SNP 198460 to 199060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:06,089 DEBUG Processing 142/719 atomic regions from SNP 42441 to 43042 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,101 DEBUG Processing 721/740 atomic regions from SNP 216285 to 216885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:06,150 DEBUG Processing 671/696 atomic regions from SNP 201224 to 201824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:06,271 DEBUG Processing 243/658 atomic regions from SNP 72774 to 73374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,323 DEBUG Processing 663/724 atomic regions from SNP 198760 to 199360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:06,381 DEBUG Processing 143/719 atomic regions from SNP 42742 to 43343 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,441 DEBUG Processing 722/740 atomic regions from SNP 216585 to 217185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:06,485 DEBUG Processing 672/696 atomic regions from SNP 201524 to 202124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:06,545 DEBUG Processing 244/658 atomic regions from SNP 73074 to 73674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,649 DEBUG Processing 664/724 atomic regions from SNP 199060 to 199660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:06,671 DEBUG Processing 144/719 atomic regions from SNP 43043 to 43644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,776 DEBUG Processing 723/740 atomic regions from SNP 216885 to 217485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:06,821 DEBUG Processing 673/696 atomic regions from SNP 201824 to 202424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:06,861 DEBUG Processing 245/658 atomic regions from SNP 73374 to 73974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,954 DEBUG Processing 145/719 atomic regions from SNP 43344 to 43945 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,991 DEBUG Processing 665/724 atomic regions from SNP 199360 to 199960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:07,105 DEBUG Processing 724/740 atomic regions from SNP 217185 to 217785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:07,147 DEBUG Processing 674/696 atomic regions from SNP 202124 to 202724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:07,173 DEBUG Processing 246/658 atomic regions from SNP 73674 to 74274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,234 DEBUG Processing 146/719 atomic regions from SNP 43645 to 44246 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,330 DEBUG Processing 666/724 atomic regions from SNP 199660 to 200260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:07,434 DEBUG Processing 725/740 atomic regions from SNP 217485 to 218085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:07,474 DEBUG Processing 675/696 atomic regions from SNP 202424 to 203024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:07,490 DEBUG Processing 247/658 atomic regions from SNP 73974 to 74574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,517 DEBUG Processing 147/719 atomic regions from SNP 43946 to 44547 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,658 DEBUG Processing 667/724 atomic regions from SNP 199960 to 200560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:07,749 DEBUG Processing 726/740 atomic regions from SNP 217785 to 218385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:07,788 DEBUG Processing 248/658 atomic regions from SNP 74274 to 74874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,794 DEBUG Processing 676/696 atomic regions from SNP 202724 to 203324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:07,807 DEBUG Processing 148/719 atomic regions from SNP 44247 to 44848 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,993 DEBUG Processing 668/724 atomic regions from SNP 200260 to 200860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:08,048 DEBUG Processing 727/740 atomic regions from SNP 218085 to 218685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:08,068 DEBUG Processing 249/658 atomic regions from SNP 74574 to 75174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,095 DEBUG Processing 149/719 atomic regions from SNP 44548 to 45149 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,106 DEBUG Processing 677/696 atomic regions from SNP 203024 to 203624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:08,327 DEBUG Processing 669/724 atomic regions from SNP 200560 to 201160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:08,353 DEBUG Processing 250/658 atomic regions from SNP 74874 to 75474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,377 DEBUG Processing 728/740 atomic regions from SNP 218385 to 218985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:08,384 DEBUG Processing 150/719 atomic regions from SNP 44849 to 45450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,423 DEBUG Processing 678/696 atomic regions from SNP 203324 to 203924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:08,635 DEBUG Processing 251/658 atomic regions from SNP 75174 to 75774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,666 DEBUG Processing 670/724 atomic regions from SNP 200860 to 201460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:08,673 DEBUG Processing 151/719 atomic regions from SNP 45150 to 45751 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,707 DEBUG Processing 729/740 atomic regions from SNP 218685 to 219285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:08,741 DEBUG Processing 679/696 atomic regions from SNP 203624 to 204224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:08,914 DEBUG Processing 252/658 atomic regions from SNP 75474 to 76074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,960 DEBUG Processing 152/719 atomic regions from SNP 45451 to 46052 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,008 DEBUG Processing 671/724 atomic regions from SNP 201160 to 201760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:09,038 DEBUG Processing 730/740 atomic regions from SNP 218985 to 219585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:09,068 DEBUG Processing 680/696 atomic regions from SNP 203924 to 204524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:09,190 DEBUG Processing 253/658 atomic regions from SNP 75774 to 76374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,245 DEBUG Processing 153/719 atomic regions from SNP 45752 to 46353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,350 DEBUG Processing 672/724 atomic regions from SNP 201460 to 202060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:09,371 DEBUG Processing 731/740 atomic regions from SNP 219285 to 219885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:09,382 DEBUG Processing 681/696 atomic regions from SNP 204224 to 204824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:09,474 DEBUG Processing 254/658 atomic regions from SNP 76074 to 76674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,529 DEBUG Processing 154/719 atomic regions from SNP 46053 to 46654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,678 DEBUG Processing 682/696 atomic regions from SNP 204524 to 205124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:09,697 DEBUG Processing 673/724 atomic regions from SNP 201760 to 202360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:09,702 DEBUG Processing 732/740 atomic regions from SNP 219585 to 220185 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:09,772 DEBUG Processing 255/658 atomic regions from SNP 76374 to 76974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,811 DEBUG Processing 155/719 atomic regions from SNP 46354 to 46955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,971 DEBUG Processing 683/696 atomic regions from SNP 204824 to 205424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:10,025 DEBUG Processing 674/724 atomic regions from SNP 202060 to 202660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:10,029 DEBUG Processing 733/740 atomic regions from SNP 219885 to 220485 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:10,086 DEBUG Processing 256/658 atomic regions from SNP 76674 to 77274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,097 DEBUG Processing 156/719 atomic regions from SNP 46655 to 47256 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,260 DEBUG Processing 684/696 atomic regions from SNP 205124 to 205724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:10,343 DEBUG Processing 675/724 atomic regions from SNP 202360 to 202960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:10,345 DEBUG Processing 734/740 atomic regions from SNP 220185 to 220785 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:10,383 DEBUG Processing 157/719 atomic regions from SNP 46956 to 47557 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,401 DEBUG Processing 257/658 atomic regions from SNP 76974 to 77574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,548 DEBUG Processing 685/696 atomic regions from SNP 205424 to 206024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:10,645 DEBUG Processing 735/740 atomic regions from SNP 220485 to 221085 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:10,662 DEBUG Processing 676/724 atomic regions from SNP 202660 to 203260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:10,672 DEBUG Processing 158/719 atomic regions from SNP 47257 to 47858 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,713 DEBUG Processing 258/658 atomic regions from SNP 77274 to 77874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,842 DEBUG Processing 686/696 atomic regions from SNP 205724 to 206324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:10,944 DEBUG Processing 736/740 atomic regions from SNP 220785 to 221385 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:10,965 DEBUG Processing 159/719 atomic regions from SNP 47558 to 48159 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,977 DEBUG Processing 677/724 atomic regions from SNP 202960 to 203560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:11,028 DEBUG Processing 259/658 atomic regions from SNP 77574 to 78174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,147 DEBUG Processing 687/696 atomic regions from SNP 206024 to 206624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:11,239 DEBUG Processing 737/740 atomic regions from SNP 221085 to 221685 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:11,256 DEBUG Processing 160/719 atomic regions from SNP 47859 to 48460 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,309 DEBUG Processing 678/724 atomic regions from SNP 203260 to 203860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:11,338 DEBUG Processing 260/658 atomic regions from SNP 77874 to 78474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,449 DEBUG Processing 688/696 atomic regions from SNP 206324 to 206924 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:11,534 DEBUG Processing 738/740 atomic regions from SNP 221385 to 221985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:11,550 DEBUG Processing 161/719 atomic regions from SNP 48160 to 48761 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,620 DEBUG Processing 261/658 atomic regions from SNP 78174 to 78774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,653 DEBUG Processing 679/724 atomic regions from SNP 203560 to 204160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:11,754 DEBUG Processing 689/696 atomic regions from SNP 206624 to 207224 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:11,828 DEBUG Processing 739/740 atomic regions from SNP 221685 to 222285 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:11,859 DEBUG Processing 162/719 atomic regions from SNP 48461 to 49062 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,920 DEBUG Processing 262/658 atomic regions from SNP 78474 to 79074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,997 DEBUG Processing 680/724 atomic regions from SNP 203860 to 204460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:12,047 DEBUG Processing 690/696 atomic regions from SNP 206924 to 207524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:12,124 DEBUG Processing 740/740 atomic regions from SNP 221985 to 222585 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:12,162 DEBUG Processing 163/719 atomic regions from SNP 48762 to 49363 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,230 DEBUG Processing 263/658 atomic regions from SNP 78774 to 79374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,326 DEBUG Unique SNPs positions in subchromosome 1: 222586 2025-01-31 09:54:12,336 DEBUG Processing 691/696 atomic regions from SNP 207224 to 207824 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:12,342 DEBUG Processing 681/724 atomic regions from SNP 204160 to 204760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:12,449 DEBUG Processing 164/719 atomic regions from SNP 49063 to 49664 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,548 DEBUG Processing 264/658 atomic regions from SNP 79074 to 79674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,628 DEBUG Processing 692/696 atomic regions from SNP 207524 to 208124 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:12,676 DEBUG Processing 682/724 atomic regions from SNP 204460 to 205060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:12,732 DEBUG Processing 165/719 atomic regions from SNP 49364 to 49965 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,848 DEBUG Processing 265/658 atomic regions from SNP 79374 to 79974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,925 DEBUG Processing 693/696 atomic regions from SNP 207824 to 208424 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:13,013 DEBUG Processing 166/719 atomic regions from SNP 49665 to 50266 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,013 DEBUG Processing 683/724 atomic regions from SNP 204760 to 205360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:13,125 DEBUG Processing 266/658 atomic regions from SNP 79674 to 80274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,219 DEBUG Processing 694/696 atomic regions from SNP 208124 to 208724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:13,299 DEBUG Processing 167/719 atomic regions from SNP 49966 to 50567 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,361 DEBUG Processing 684/724 atomic regions from SNP 205060 to 205660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:13,401 DEBUG Processing 267/658 atomic regions from SNP 79974 to 80574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,513 DEBUG Processing 695/696 atomic regions from SNP 208424 to 209024 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:13,583 DEBUG Processing 168/719 atomic regions from SNP 50267 to 50868 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,688 DEBUG Processing 268/658 atomic regions from SNP 80274 to 80874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,706 DEBUG Processing 685/724 atomic regions from SNP 205360 to 205960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:13,805 DEBUG Processing 696/696 atomic regions from SNP 208724 to 209324 for chr7 (subchromosome 4 of 4). 2025-01-31 09:54:13,867 DEBUG Processing 169/719 atomic regions from SNP 50568 to 51169 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,993 DEBUG Processing 269/658 atomic regions from SNP 80574 to 81174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,005 DEBUG Unique SNPs positions in subchromosome 4: 209325 2025-01-31 09:54:14,055 DEBUG Processing 686/724 atomic regions from SNP 205660 to 206260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:14,147 DEBUG Processing 170/719 atomic regions from SNP 50869 to 51470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,287 DEBUG Processing 270/658 atomic regions from SNP 80874 to 81474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,400 DEBUG Processing 687/724 atomic regions from SNP 205960 to 206560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:14,427 DEBUG Processing 171/719 atomic regions from SNP 51170 to 51771 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,575 DEBUG Processing 271/658 atomic regions from SNP 81174 to 81774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,709 DEBUG Processing 172/719 atomic regions from SNP 51471 to 52072 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,743 DEBUG Processing 688/724 atomic regions from SNP 206260 to 206860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:14,845 DEBUG Processing 272/658 atomic regions from SNP 81474 to 82074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,990 DEBUG Processing 173/719 atomic regions from SNP 51772 to 52373 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,090 DEBUG Processing 689/724 atomic regions from SNP 206560 to 207160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:15,118 DEBUG Processing 273/658 atomic regions from SNP 81774 to 82374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,269 DEBUG Processing 174/719 atomic regions from SNP 52073 to 52674 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,404 DEBUG Processing 274/658 atomic regions from SNP 82074 to 82674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,437 DEBUG Processing 690/724 atomic regions from SNP 206860 to 207460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:15,548 DEBUG Processing 175/719 atomic regions from SNP 52374 to 52975 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,710 DEBUG Processing 275/658 atomic regions from SNP 82374 to 82974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,783 DEBUG Processing 691/724 atomic regions from SNP 207160 to 207760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:15,831 DEBUG Processing 176/719 atomic regions from SNP 52675 to 53276 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,000 DEBUG Processing 276/658 atomic regions from SNP 82674 to 83274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,114 DEBUG Processing 177/719 atomic regions from SNP 52976 to 53577 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,129 DEBUG Processing 692/724 atomic regions from SNP 207460 to 208060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:16,307 DEBUG Processing 277/658 atomic regions from SNP 82974 to 83574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,396 DEBUG Processing 178/719 atomic regions from SNP 53277 to 53878 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,474 DEBUG Processing 693/724 atomic regions from SNP 207760 to 208360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:16,603 DEBUG Processing 278/658 atomic regions from SNP 83274 to 83874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,679 DEBUG Processing 179/719 atomic regions from SNP 53578 to 54179 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,804 DEBUG Processing 694/724 atomic regions from SNP 208060 to 208660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:16,875 DEBUG Processing 279/658 atomic regions from SNP 83574 to 84174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,959 DEBUG Processing 180/719 atomic regions from SNP 53879 to 54480 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,121 DEBUG Processing 695/724 atomic regions from SNP 208360 to 208960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:17,151 DEBUG Processing 280/658 atomic regions from SNP 83874 to 84474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,240 DEBUG Processing 181/719 atomic regions from SNP 54180 to 54781 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,426 DEBUG Processing 281/658 atomic regions from SNP 84174 to 84774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,433 DEBUG Processing 696/724 atomic regions from SNP 208660 to 209260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:17,521 DEBUG Processing 182/719 atomic regions from SNP 54481 to 55082 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,704 DEBUG Processing 282/658 atomic regions from SNP 84474 to 85074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,745 DEBUG Processing 697/724 atomic regions from SNP 208960 to 209560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:17,802 DEBUG Processing 183/719 atomic regions from SNP 54782 to 55383 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,977 DEBUG Processing 283/658 atomic regions from SNP 84774 to 85374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,052 DEBUG Processing 698/724 atomic regions from SNP 209260 to 209860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:18,085 DEBUG Processing 184/719 atomic regions from SNP 55083 to 55684 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,249 DEBUG Processing 284/658 atomic regions from SNP 85074 to 85674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,385 DEBUG Processing 699/724 atomic regions from SNP 209560 to 210160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:18,390 DEBUG Processing 185/719 atomic regions from SNP 55384 to 55985 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,523 DEBUG Processing 285/658 atomic regions from SNP 85374 to 85974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,686 DEBUG Processing 186/719 atomic regions from SNP 55685 to 56286 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,704 DEBUG Processing 700/724 atomic regions from SNP 209860 to 210460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:18,801 DEBUG Processing 286/658 atomic regions from SNP 85674 to 86274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,971 DEBUG Processing 187/719 atomic regions from SNP 55986 to 56587 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,012 DEBUG Processing 701/724 atomic regions from SNP 210160 to 210760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:19,077 DEBUG Processing 287/658 atomic regions from SNP 85974 to 86574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,250 DEBUG Processing 188/719 atomic regions from SNP 56287 to 56888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,317 DEBUG Processing 702/724 atomic regions from SNP 210460 to 211060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:19,356 DEBUG Processing 288/658 atomic regions from SNP 86274 to 86874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,534 DEBUG Processing 189/719 atomic regions from SNP 56588 to 57189 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,619 DEBUG Processing 703/724 atomic regions from SNP 210760 to 211360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:19,638 DEBUG Processing 289/658 atomic regions from SNP 86574 to 87174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,813 DEBUG Processing 190/719 atomic regions from SNP 56889 to 57490 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,919 DEBUG Processing 290/658 atomic regions from SNP 86874 to 87474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,925 DEBUG Processing 704/724 atomic regions from SNP 211060 to 211660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:20,098 DEBUG Processing 191/719 atomic regions from SNP 57190 to 57791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,204 DEBUG Processing 291/658 atomic regions from SNP 87174 to 87774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,228 DEBUG Processing 705/724 atomic regions from SNP 211360 to 211960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:20,275 DEBUG Subchromosome time: 257.48559090390336, subchromosome SNPs: 222586 2025-01-31 09:54:20,275 DEBUG Estimated BADs: [2.25, 0.56, 2.25, 1.13, 6.75, 2.25, 0.32, 1.13, 2.25, 6.75, 0.28, 2.25, 4.50, 22.51, 2.25, 0.56, 2.25, 0.75, 13.50, 1.13] SNP counts: [20547, 3015, 22871, 17513, 6587, 6015, 4805, 9313, 6828, 8182, 1801, 18008, 7311, 3883, 31404, 16790, 26705, 4604, 4385, 2019] SNP IDs counts: [20547, 3015, 22871, 17513, 6587, 6015, 4805, 9313, 6828, 8182, 1801, 18008, 7311, 3883, 31404, 16790, 26705, 4604, 4385, 2019] Critical gap: 620712bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 14.87Mbp, 16.78Mbp, 29.70Mbp, 39.96Mbp, 43.48Mbp, 46.82Mbp, 49.93Mbp, 55.52Mbp, 59.80Mbp, 64.17Mbp, 65.39Mbp, 75.55Mbp, 79.64Mbp, 81.66Mbp, 99.31Mbp, 109.40Mbp, 124.28Mbp, 126.90Mbp, 129.28Mbp, 130.69Mbp] 2025-01-31 09:54:20,275 DEBUG chr10 time: 257.4860613279743 s 2025-01-31 09:54:20,388 DEBUG Processing 192/719 atomic regions from SNP 57491 to 58092 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,480 DEBUG chr10: Fitting background model for 20 segments 2025-01-31 09:54:20,486 DEBUG Processing 292/658 atomic regions from SNP 87474 to 88074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,536 DEBUG Processing 706/724 atomic regions from SNP 211660 to 212260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:20,681 DEBUG Processing 193/719 atomic regions from SNP 57792 to 58393 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,770 DEBUG Processing 293/658 atomic regions from SNP 87774 to 88374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,841 DEBUG Processing 707/724 atomic regions from SNP 211960 to 212560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:20,966 DEBUG Processing 194/719 atomic regions from SNP 58093 to 58694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,048 DEBUG Processing 294/658 atomic regions from SNP 88074 to 88674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,147 DEBUG Processing 708/724 atomic regions from SNP 212260 to 212860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:21,255 DEBUG Processing 195/719 atomic regions from SNP 58394 to 58994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,330 DEBUG Processing 295/658 atomic regions from SNP 88374 to 88974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,461 DEBUG Processing 709/724 atomic regions from SNP 212560 to 213160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:21,547 DEBUG Processing 196/719 atomic regions from SNP 58694 to 59294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,611 DEBUG Processing 296/658 atomic regions from SNP 88674 to 89274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,794 DEBUG Processing 710/724 atomic regions from SNP 212860 to 213460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:21,834 DEBUG Processing 197/719 atomic regions from SNP 58994 to 59594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,895 DEBUG Processing 297/658 atomic regions from SNP 88974 to 89574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,097 DEBUG Processing 711/724 atomic regions from SNP 213160 to 213760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:22,123 DEBUG Processing 198/719 atomic regions from SNP 59294 to 59894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,175 DEBUG Processing 298/658 atomic regions from SNP 89274 to 89874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,410 DEBUG Processing 199/719 atomic regions from SNP 59594 to 60194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,425 DEBUG Processing 712/724 atomic regions from SNP 213460 to 214060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:22,462 DEBUG Processing 299/658 atomic regions from SNP 89574 to 90174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,700 DEBUG Processing 200/719 atomic regions from SNP 59894 to 60494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,727 DEBUG Processing 713/724 atomic regions from SNP 213760 to 214360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:22,766 DEBUG Processing 300/658 atomic regions from SNP 89874 to 90474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,986 DEBUG Processing 201/719 atomic regions from SNP 60194 to 60794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,029 DEBUG Processing 714/724 atomic regions from SNP 214060 to 214660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:23,052 DEBUG Processing 301/658 atomic regions from SNP 90174 to 90774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,270 DEBUG Processing 202/719 atomic regions from SNP 60494 to 61094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,330 DEBUG Processing 302/658 atomic regions from SNP 90474 to 91074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,332 DEBUG Processing 715/724 atomic regions from SNP 214360 to 214960 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:23,557 DEBUG Processing 203/719 atomic regions from SNP 60794 to 61394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,610 DEBUG Processing 303/658 atomic regions from SNP 90774 to 91374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,638 DEBUG Processing 716/724 atomic regions from SNP 214660 to 215260 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:23,844 DEBUG Processing 204/719 atomic regions from SNP 61094 to 61694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,889 DEBUG Processing 304/658 atomic regions from SNP 91074 to 91674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,940 DEBUG Processing 717/724 atomic regions from SNP 214960 to 215560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:24,131 DEBUG Processing 205/719 atomic regions from SNP 61394 to 61994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,167 DEBUG Processing 305/658 atomic regions from SNP 91374 to 91974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,248 DEBUG Processing 718/724 atomic regions from SNP 215260 to 215860 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:24,415 DEBUG Processing 206/719 atomic regions from SNP 61694 to 62294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,452 DEBUG Processing 306/658 atomic regions from SNP 91674 to 92274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,552 DEBUG Processing 719/724 atomic regions from SNP 215560 to 216160 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:24,705 DEBUG Processing 207/719 atomic regions from SNP 61994 to 62594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,766 DEBUG Processing 307/658 atomic regions from SNP 91974 to 92574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,852 DEBUG Processing 720/724 atomic regions from SNP 215860 to 216460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:24,995 DEBUG Processing 208/719 atomic regions from SNP 62294 to 62894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,071 DEBUG Processing 308/658 atomic regions from SNP 92274 to 92874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,156 DEBUG Processing 721/724 atomic regions from SNP 216160 to 216760 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:25,283 DEBUG Processing 209/719 atomic regions from SNP 62594 to 63194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,378 DEBUG Processing 309/658 atomic regions from SNP 92574 to 93174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,460 DEBUG Processing 722/724 atomic regions from SNP 216460 to 217060 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:25,570 DEBUG Processing 210/719 atomic regions from SNP 62894 to 63494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,676 DEBUG Processing 310/658 atomic regions from SNP 92874 to 93474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,766 DEBUG Processing 723/724 atomic regions from SNP 216760 to 217360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:25,855 DEBUG Processing 211/719 atomic regions from SNP 63194 to 63794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,958 DEBUG Processing 311/658 atomic regions from SNP 93174 to 93774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,073 DEBUG Processing 724/724 atomic regions from SNP 217060 to 217660 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:26,143 DEBUG Processing 212/719 atomic regions from SNP 63494 to 64094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,239 DEBUG Processing 312/658 atomic regions from SNP 93474 to 94074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,292 DEBUG Unique SNPs positions in subchromosome 1: 217661 2025-01-31 09:54:26,434 DEBUG Processing 213/719 atomic regions from SNP 63794 to 64394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,519 DEBUG Processing 313/658 atomic regions from SNP 93774 to 94374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,716 DEBUG Processing 214/719 atomic regions from SNP 64094 to 64694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,797 DEBUG Processing 314/658 atomic regions from SNP 94074 to 94674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,002 DEBUG Processing 215/719 atomic regions from SNP 64394 to 64994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,076 DEBUG Processing 315/658 atomic regions from SNP 94374 to 94974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,287 DEBUG Processing 216/719 atomic regions from SNP 64694 to 65294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,355 DEBUG Processing 316/658 atomic regions from SNP 94674 to 95274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,600 DEBUG Processing 217/719 atomic regions from SNP 64994 to 65594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,632 DEBUG Processing 317/658 atomic regions from SNP 94974 to 95574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,892 DEBUG Processing 218/719 atomic regions from SNP 65294 to 65894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,917 DEBUG Processing 318/658 atomic regions from SNP 95274 to 95874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,178 DEBUG Processing 219/719 atomic regions from SNP 65594 to 66194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,207 DEBUG Processing 319/658 atomic regions from SNP 95574 to 96174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,465 DEBUG Processing 220/719 atomic regions from SNP 65894 to 66494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,490 DEBUG Processing 320/658 atomic regions from SNP 95874 to 96474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,751 DEBUG Processing 221/719 atomic regions from SNP 66194 to 66794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,783 DEBUG Processing 321/658 atomic regions from SNP 96174 to 96774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,036 DEBUG Processing 222/719 atomic regions from SNP 66494 to 67094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,085 DEBUG Processing 322/658 atomic regions from SNP 96474 to 97074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,153 DEBUG Subchromosome time: 251.12413280003238, subchromosome SNPs: 209325 2025-01-31 09:54:29,153 DEBUG Estimated BADs: [1.28, 10.27, 0.51, 5.14, 0.51, 12.84, 0.51, 12.84, 0.64, 15.41, 0.00, 0.86, 12.84, 0.86, 10.27, 0.64, 2.57, 0.64, 2.57, 20.54, 5.14, 0.51, 2.57, 0.86, 0.29, 2.57, 0.51, 7.70, 2.57, 0.86, 2.57, 0.37, 2.57, 10.27, 2.57, 0.32, 2.57, 0.43, 1.28, 0.32, 2.57, 5.14, 0.86, 2.57, 0.51, 2.57, 12.84, 2.57, 15.41, 5.14] SNP counts: [817, 2363, 886, 2672, 3514, 467, 3130, 2323, 2198, 2213, 16, 1479, 2951, 1783, 7128, 2081, 10551, 3847, 2260, 2634, 2770, 1731, 3075, 3545, 5122, 2013, 10736, 1740, 6577, 9065, 5181, 2547, 2357, 3341, 7208, 5697, 3596, 2097, 2417, 4193, 4173, 9309, 2994, 1448, 3045, 33238, 3733, 23215, 1642, 6806] SNP IDs counts: [817, 2363, 886, 2672, 3514, 467, 3130, 2323, 2198, 2213, 16, 1479, 2951, 1783, 7128, 2081, 10551, 3847, 2260, 2634, 2770, 1731, 3075, 3545, 5122, 2013, 10736, 1740, 6577, 9065, 5181, 2547, 2357, 3341, 7208, 5697, 3596, 2097, 2417, 4193, 4173, 9309, 2994, 1448, 3045, 33238, 3733, 23215, 1642, 6806] Critical gap: 666618bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 3.58Mbp, 5.13Mbp, 5.78Mbp, 9.17Mbp[0.75Mbp], 12.82Mbp, 13.06Mbp, 15.88Mbp, 17.10Mbp, 18.88Mbp, 20.07Mbp[0.94Mbp], 21.29Mbp[1.49Mbp], 24.29Mbp, 25.92Mbp, 27.13Mbp, 31.02Mbp, 33.84Mbp, 40.48Mbp, 43.02Mbp, 44.34Mbp, 45.71Mbp, 47.17Mbp, 48.33Mbp, 50.03Mbp, 52.18Mbp, 55.43Mbp, 56.64Mbp, 63.89Mbp, 64.87Mbp, 68.41Mbp, 73.52Mbp, 76.45Mbp, 77.94Mbp, 79.23Mbp, 80.99Mbp, 84.93Mbp, 88.56Mbp, 90.60Mbp, 91.81Mbp, 93.22Mbp, 95.82Mbp, 98.10Mbp, 103.04Mbp, 105.01Mbp, 106.24Mbp, 108.17Mbp, 126.24Mbp, 128.23Mbp, 140.81Mbp, 141.67Mbp, 145.44Mbp] 2025-01-31 09:54:29,153 DEBUG chr7 time: 251.1247240509838 s 2025-01-31 09:54:29,322 DEBUG Processing 223/719 atomic regions from SNP 66794 to 67394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,372 DEBUG chr7: Fitting background model for 49 segments 2025-01-31 09:54:29,393 DEBUG Processing 323/658 atomic regions from SNP 96774 to 97374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,608 DEBUG Processing 224/719 atomic regions from SNP 67094 to 67694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,690 DEBUG Processing 324/658 atomic regions from SNP 97074 to 97674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,894 DEBUG Processing 225/719 atomic regions from SNP 67394 to 67994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,968 DEBUG Processing 325/658 atomic regions from SNP 97374 to 97974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,181 DEBUG Processing 226/719 atomic regions from SNP 67694 to 68294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,274 DEBUG Processing 326/658 atomic regions from SNP 97674 to 98274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,468 DEBUG Processing 227/719 atomic regions from SNP 67994 to 68594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,566 DEBUG Processing 327/658 atomic regions from SNP 97974 to 98574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,756 DEBUG Processing 228/719 atomic regions from SNP 68294 to 68894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,847 DEBUG Processing 328/658 atomic regions from SNP 98274 to 98874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,040 DEBUG Processing 229/719 atomic regions from SNP 68594 to 69194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,127 DEBUG Processing 329/658 atomic regions from SNP 98574 to 99174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,325 DEBUG Processing 230/719 atomic regions from SNP 68894 to 69494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,403 DEBUG Processing 330/658 atomic regions from SNP 98874 to 99474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,616 DEBUG Processing 231/719 atomic regions from SNP 69194 to 69794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,683 DEBUG Processing 331/658 atomic regions from SNP 99174 to 99774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,920 DEBUG Processing 232/719 atomic regions from SNP 69494 to 70094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,963 DEBUG Processing 332/658 atomic regions from SNP 99474 to 100074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,240 DEBUG Processing 233/719 atomic regions from SNP 69794 to 70394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,264 DEBUG Processing 333/658 atomic regions from SNP 99774 to 100374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,527 DEBUG Processing 234/719 atomic regions from SNP 70094 to 70694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,564 DEBUG Processing 334/658 atomic regions from SNP 100074 to 100674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,817 DEBUG Processing 235/719 atomic regions from SNP 70394 to 70994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,847 DEBUG Processing 335/658 atomic regions from SNP 100374 to 100974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,109 DEBUG Processing 236/719 atomic regions from SNP 70694 to 71294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,133 DEBUG Processing 336/658 atomic regions from SNP 100674 to 101274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,413 DEBUG Processing 237/719 atomic regions from SNP 70994 to 71594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,421 DEBUG Processing 337/658 atomic regions from SNP 100974 to 101574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,709 DEBUG Processing 338/658 atomic regions from SNP 101274 to 101874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,739 DEBUG Processing 238/719 atomic regions from SNP 71294 to 71894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,992 DEBUG Processing 339/658 atomic regions from SNP 101574 to 102174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,060 DEBUG Processing 239/719 atomic regions from SNP 71594 to 72194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,275 DEBUG Processing 340/658 atomic regions from SNP 101874 to 102474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,386 DEBUG Processing 240/719 atomic regions from SNP 71894 to 72494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,556 DEBUG Processing 341/658 atomic regions from SNP 102174 to 102774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,704 DEBUG Processing 241/719 atomic regions from SNP 72194 to 72794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,836 DEBUG Processing 342/658 atomic regions from SNP 102474 to 103074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,012 DEBUG Processing 242/719 atomic regions from SNP 72494 to 73094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,118 DEBUG Processing 343/658 atomic regions from SNP 102774 to 103374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,317 DEBUG Processing 243/719 atomic regions from SNP 72794 to 73394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,399 DEBUG Processing 344/658 atomic regions from SNP 103074 to 103674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,608 DEBUG Processing 244/719 atomic regions from SNP 73094 to 73694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,682 DEBUG Processing 345/658 atomic regions from SNP 103374 to 103974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,897 DEBUG Processing 245/719 atomic regions from SNP 73394 to 73994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,965 DEBUG Processing 346/658 atomic regions from SNP 103674 to 104274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,187 DEBUG Processing 246/719 atomic regions from SNP 73694 to 74294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,264 DEBUG Processing 347/658 atomic regions from SNP 103974 to 104574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,477 DEBUG Processing 247/719 atomic regions from SNP 73994 to 74594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,566 DEBUG Processing 348/658 atomic regions from SNP 104274 to 104874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,783 DEBUG Processing 248/719 atomic regions from SNP 74294 to 74894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,851 DEBUG Processing 349/658 atomic regions from SNP 104574 to 105174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,106 DEBUG Processing 249/719 atomic regions from SNP 74594 to 75194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,160 DEBUG Processing 350/658 atomic regions from SNP 104874 to 105474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,428 DEBUG Processing 250/719 atomic regions from SNP 74894 to 75494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,456 DEBUG Processing 351/658 atomic regions from SNP 105174 to 105774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,731 DEBUG Processing 251/719 atomic regions from SNP 75194 to 75794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,769 DEBUG Processing 352/658 atomic regions from SNP 105474 to 106074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,027 DEBUG Processing 252/719 atomic regions from SNP 75494 to 76094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,091 DEBUG Processing 353/658 atomic regions from SNP 105774 to 106374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,321 DEBUG Processing 253/719 atomic regions from SNP 75794 to 76394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,397 DEBUG Processing 354/658 atomic regions from SNP 106074 to 106674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,614 DEBUG Processing 254/719 atomic regions from SNP 76094 to 76694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,683 DEBUG Processing 355/658 atomic regions from SNP 106374 to 106974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,907 DEBUG Processing 255/719 atomic regions from SNP 76394 to 76994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,969 DEBUG Processing 356/658 atomic regions from SNP 106674 to 107274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,034 DEBUG Subchromosome time: 259.7302306249039, subchromosome SNPs: 217661 2025-01-31 09:54:39,035 DEBUG Estimated BADs: [5.26, 0.29, 1.32, 5.26, 2.63, 0.88, 2.63, 0.66, 2.63, 0.38, 0.88, 26.31, 1.32, 26.31, 10.52, 2.63, 15.79, 2.63, 7.89, 0.38, 1.32, 10.52, 2.63, 7.89, 2.63, 5.26, 18.42, 5.26] SNP counts: [2802, 4492, 6025, 4239, 25288, 5703, 8701, 9900, 9887, 6613, 12377, 99, 14764, 2290, 2599, 19033, 2545, 16812, 4779, 10498, 2789, 5023, 6714, 1682, 8884, 4656, 8367, 10100] SNP IDs counts: [2802, 4492, 6025, 4239, 25288, 5703, 8701, 9900, 9887, 6613, 12377, 99, 14764, 2290, 2599, 19033, 2545, 16812, 4779, 10498, 2789, 5023, 6714, 1682, 8884, 4656, 8367, 10100] Critical gap: 621465bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.75Mbp, 7.70Mbp, 10.99Mbp, 13.23Mbp, 29.20Mbp, 32.58Mbp, 37.40Mbp, 43.53Mbp, 49.02Mbp, 53.10Mbp, 60.94Mbp, 60.99Mbp, 69.75Mbp, 70.94Mbp, 72.54Mbp, 83.57Mbp, 84.89Mbp, 94.01Mbp, 96.61Mbp, 103.01Mbp, 104.53Mbp, 107.28Mbp, 110.85Mbp, 111.73Mbp, 116.87Mbp, 119.34Mbp, 123.80Mbp, 129.40Mbp] 2025-01-31 09:54:39,035 DEBUG chr8 time: 259.73075484496076 s 2025-01-31 09:54:39,203 DEBUG Processing 256/719 atomic regions from SNP 76694 to 77294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,252 DEBUG chr8: Fitting background model for 28 segments 2025-01-31 09:54:39,260 DEBUG Processing 357/658 atomic regions from SNP 106974 to 107574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,503 DEBUG Processing 257/719 atomic regions from SNP 76994 to 77594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,550 DEBUG Processing 358/658 atomic regions from SNP 107274 to 107874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,797 DEBUG Processing 258/719 atomic regions from SNP 77294 to 77894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,836 DEBUG Processing 359/658 atomic regions from SNP 107574 to 108174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,089 DEBUG Processing 259/719 atomic regions from SNP 77594 to 78194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,118 DEBUG Processing 360/658 atomic regions from SNP 107874 to 108474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,378 DEBUG Processing 260/719 atomic regions from SNP 77894 to 78494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,400 DEBUG Processing 361/658 atomic regions from SNP 108174 to 108774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,667 DEBUG Processing 261/719 atomic regions from SNP 78194 to 78794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,684 DEBUG Processing 362/658 atomic regions from SNP 108474 to 109074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,958 DEBUG Processing 262/719 atomic regions from SNP 78494 to 79094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,969 DEBUG Processing 363/658 atomic regions from SNP 108774 to 109374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,253 DEBUG Processing 263/719 atomic regions from SNP 78794 to 79394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,257 DEBUG Processing 364/658 atomic regions from SNP 109074 to 109674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,548 DEBUG Processing 365/658 atomic regions from SNP 109374 to 109974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,551 DEBUG Processing 264/719 atomic regions from SNP 79094 to 79694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,840 DEBUG Processing 366/658 atomic regions from SNP 109674 to 110274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,849 DEBUG Processing 265/719 atomic regions from SNP 79394 to 79994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,130 DEBUG Processing 367/658 atomic regions from SNP 109974 to 110574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,145 DEBUG Processing 266/719 atomic regions from SNP 79694 to 80294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,422 DEBUG Processing 368/658 atomic regions from SNP 110274 to 110874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,443 DEBUG Processing 267/719 atomic regions from SNP 79994 to 80594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,736 DEBUG Processing 369/658 atomic regions from SNP 110574 to 111174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,741 DEBUG Processing 268/719 atomic regions from SNP 80294 to 80894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,043 DEBUG Processing 269/719 atomic regions from SNP 80594 to 81194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,058 DEBUG Processing 370/658 atomic regions from SNP 110874 to 111474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,338 DEBUG Processing 270/719 atomic regions from SNP 80894 to 81494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,361 DEBUG Processing 371/658 atomic regions from SNP 111174 to 111774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,637 DEBUG Processing 271/719 atomic regions from SNP 81194 to 81794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,654 DEBUG Processing 372/658 atomic regions from SNP 111474 to 112074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,935 DEBUG Processing 272/719 atomic regions from SNP 81494 to 82094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,945 DEBUG Processing 373/658 atomic regions from SNP 111774 to 112374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,234 DEBUG Processing 273/719 atomic regions from SNP 81794 to 82394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,237 DEBUG Processing 374/658 atomic regions from SNP 112074 to 112674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,527 DEBUG Processing 375/658 atomic regions from SNP 112374 to 112974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,531 DEBUG Processing 274/719 atomic regions from SNP 82094 to 82694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,819 DEBUG Processing 376/658 atomic regions from SNP 112674 to 113274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,829 DEBUG Processing 275/719 atomic regions from SNP 82394 to 82994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,124 DEBUG Processing 377/658 atomic regions from SNP 112974 to 113574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,125 DEBUG Processing 276/719 atomic regions from SNP 82694 to 83294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,489 DEBUG Processing 378/658 atomic regions from SNP 113274 to 113874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,496 DEBUG Processing 277/719 atomic regions from SNP 82994 to 83594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,800 DEBUG Processing 379/658 atomic regions from SNP 113574 to 114174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,814 DEBUG Processing 278/719 atomic regions from SNP 83294 to 83894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,108 DEBUG Processing 380/658 atomic regions from SNP 113874 to 114474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,115 DEBUG Processing 279/719 atomic regions from SNP 83594 to 84194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,397 DEBUG Processing 381/658 atomic regions from SNP 114174 to 114774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,431 DEBUG Processing 280/719 atomic regions from SNP 83894 to 84494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,683 DEBUG Processing 382/658 atomic regions from SNP 114474 to 115074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,726 DEBUG Processing 281/719 atomic regions from SNP 84194 to 84794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,969 DEBUG Processing 383/658 atomic regions from SNP 114774 to 115374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,018 DEBUG Processing 282/719 atomic regions from SNP 84494 to 85094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,312 DEBUG Processing 384/658 atomic regions from SNP 115074 to 115674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,343 DEBUG Processing 283/719 atomic regions from SNP 84794 to 85394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,626 DEBUG Processing 385/658 atomic regions from SNP 115374 to 115974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,644 DEBUG Processing 284/719 atomic regions from SNP 85094 to 85694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,954 DEBUG Processing 386/658 atomic regions from SNP 115674 to 116274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,958 DEBUG Processing 285/719 atomic regions from SNP 85394 to 85994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,267 DEBUG Processing 387/658 atomic regions from SNP 115974 to 116574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,267 DEBUG Processing 286/719 atomic regions from SNP 85694 to 86294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,578 DEBUG Processing 287/719 atomic regions from SNP 85994 to 86594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,589 DEBUG Processing 388/658 atomic regions from SNP 116274 to 116874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,872 DEBUG Processing 288/719 atomic regions from SNP 86294 to 86894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,888 DEBUG Processing 389/658 atomic regions from SNP 116574 to 117174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,153 DEBUG Processing 289/719 atomic regions from SNP 86594 to 87194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,159 DEBUG Processing 390/658 atomic regions from SNP 116874 to 117474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,427 DEBUG Processing 391/658 atomic regions from SNP 117174 to 117774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,431 DEBUG Processing 290/719 atomic regions from SNP 86894 to 87494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,719 DEBUG Processing 392/658 atomic regions from SNP 117474 to 118074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,728 DEBUG Processing 291/719 atomic regions from SNP 87194 to 87794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,002 DEBUG Processing 393/658 atomic regions from SNP 117774 to 118374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,017 DEBUG Processing 292/719 atomic regions from SNP 87494 to 88094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,285 DEBUG Processing 394/658 atomic regions from SNP 118074 to 118674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,306 DEBUG Processing 293/719 atomic regions from SNP 87794 to 88394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,566 DEBUG Processing 395/658 atomic regions from SNP 118374 to 118974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,595 DEBUG Processing 294/719 atomic regions from SNP 88094 to 88694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,858 DEBUG Processing 396/658 atomic regions from SNP 118674 to 119274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,892 DEBUG Processing 295/719 atomic regions from SNP 88394 to 88994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,146 DEBUG Processing 397/658 atomic regions from SNP 118974 to 119574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,186 DEBUG Processing 296/719 atomic regions from SNP 88694 to 89294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,425 DEBUG Processing 398/658 atomic regions from SNP 119274 to 119874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,469 DEBUG Processing 297/719 atomic regions from SNP 88994 to 89594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,698 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:54:51,699 DEBUG Processing 399/658 atomic regions from SNP 119574 to 120174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,752 DEBUG Processing 298/719 atomic regions from SNP 89294 to 89894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,987 DEBUG Processing 400/658 atomic regions from SNP 119874 to 120474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,044 DEBUG Processing 299/719 atomic regions from SNP 89594 to 90194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,260 DEBUG Processing 401/658 atomic regions from SNP 120174 to 120774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,318 DEBUG Processing 300/719 atomic regions from SNP 89894 to 90494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,529 DEBUG Processing 402/658 atomic regions from SNP 120474 to 121074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,593 DEBUG Processing 301/719 atomic regions from SNP 90194 to 90794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,800 DEBUG Processing 403/658 atomic regions from SNP 120774 to 121374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,884 DEBUG Processing 302/719 atomic regions from SNP 90494 to 91094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,070 DEBUG Processing 404/658 atomic regions from SNP 121074 to 121674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,193 DEBUG Processing 303/719 atomic regions from SNP 90794 to 91394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,353 DEBUG Processing 405/658 atomic regions from SNP 121374 to 121974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,471 DEBUG Processing 304/719 atomic regions from SNP 91094 to 91694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,657 DEBUG Processing 406/658 atomic regions from SNP 121674 to 122274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,748 DEBUG Processing 305/719 atomic regions from SNP 91394 to 91994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,954 DEBUG Processing 407/658 atomic regions from SNP 121974 to 122574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,029 DEBUG Processing 306/719 atomic regions from SNP 91694 to 92294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,241 DEBUG Processing 408/658 atomic regions from SNP 122274 to 122874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,313 DEBUG Processing 307/719 atomic regions from SNP 91994 to 92594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,518 DEBUG Processing 409/658 atomic regions from SNP 122574 to 123174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,594 DEBUG Processing 308/719 atomic regions from SNP 92294 to 92894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,784 DEBUG Processing 410/658 atomic regions from SNP 122874 to 123474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,861 DEBUG Processing 309/719 atomic regions from SNP 92594 to 93194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,051 DEBUG Processing 411/658 atomic regions from SNP 123174 to 123774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,128 DEBUG Processing 310/719 atomic regions from SNP 92894 to 93494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,315 DEBUG Processing 412/658 atomic regions from SNP 123474 to 124074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,394 DEBUG Processing 311/719 atomic regions from SNP 93194 to 93794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,580 DEBUG Processing 413/658 atomic regions from SNP 123774 to 124374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,660 DEBUG Processing 312/719 atomic regions from SNP 93494 to 94094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,847 DEBUG Processing 414/658 atomic regions from SNP 124074 to 124674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,927 DEBUG Processing 313/719 atomic regions from SNP 93794 to 94394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,113 DEBUG Processing 415/658 atomic regions from SNP 124374 to 124974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,195 DEBUG Processing 314/719 atomic regions from SNP 94094 to 94694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,379 DEBUG Processing 416/658 atomic regions from SNP 124674 to 125274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,461 DEBUG Processing 315/719 atomic regions from SNP 94394 to 94994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,641 DEBUG Processing 417/658 atomic regions from SNP 124974 to 125574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,737 DEBUG Processing 316/719 atomic regions from SNP 94694 to 95294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,910 DEBUG Processing 418/658 atomic regions from SNP 125274 to 125874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,038 DEBUG Processing 317/719 atomic regions from SNP 94994 to 95594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,185 DEBUG Processing 419/658 atomic regions from SNP 125574 to 126174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,342 DEBUG Processing 318/719 atomic regions from SNP 95294 to 95894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,462 DEBUG Processing 420/658 atomic regions from SNP 125874 to 126474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,635 DEBUG Processing 319/719 atomic regions from SNP 95594 to 96194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,730 DEBUG Processing 421/658 atomic regions from SNP 126174 to 126774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,937 DEBUG Processing 320/719 atomic regions from SNP 95894 to 96494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,001 DEBUG Processing 422/658 atomic regions from SNP 126474 to 127074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,247 DEBUG Processing 321/719 atomic regions from SNP 96194 to 96794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,262 DEBUG Processing 423/658 atomic regions from SNP 126774 to 127374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,525 DEBUG Processing 424/658 atomic regions from SNP 127074 to 127674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,553 DEBUG Processing 322/719 atomic regions from SNP 96494 to 97094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,788 DEBUG Processing 425/658 atomic regions from SNP 127374 to 127974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,836 DEBUG Processing 323/719 atomic regions from SNP 96794 to 97394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,054 DEBUG Processing 426/658 atomic regions from SNP 127674 to 128274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,119 DEBUG Processing 324/719 atomic regions from SNP 97094 to 97694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,318 DEBUG Processing 427/658 atomic regions from SNP 127974 to 128574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,423 DEBUG Processing 325/719 atomic regions from SNP 97394 to 97994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,582 DEBUG Processing 428/658 atomic regions from SNP 128274 to 128874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,732 DEBUG Processing 326/719 atomic regions from SNP 97694 to 98294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,861 DEBUG Processing 429/658 atomic regions from SNP 128574 to 129174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:00,038 DEBUG Processing 327/719 atomic regions from SNP 97994 to 98594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,136 DEBUG Processing 430/658 atomic regions from SNP 128874 to 129474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:00,338 DEBUG Processing 328/719 atomic regions from SNP 98294 to 98894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,407 DEBUG Processing 431/658 atomic regions from SNP 129174 to 129774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:00,627 DEBUG Processing 329/719 atomic regions from SNP 98594 to 99194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,679 DEBUG Processing 432/658 atomic regions from SNP 129474 to 130074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:00,907 DEBUG Processing 330/719 atomic regions from SNP 98894 to 99494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,951 DEBUG Processing 433/658 atomic regions from SNP 129774 to 130374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:01,204 DEBUG Processing 331/719 atomic regions from SNP 99194 to 99794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,220 DEBUG Processing 434/658 atomic regions from SNP 130074 to 130674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:01,495 DEBUG Processing 435/658 atomic regions from SNP 130374 to 130974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:01,504 DEBUG Processing 332/719 atomic regions from SNP 99494 to 100094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,770 DEBUG Processing 436/658 atomic regions from SNP 130674 to 131274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:01,794 DEBUG Processing 333/719 atomic regions from SNP 99794 to 100394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,042 DEBUG Processing 437/658 atomic regions from SNP 130974 to 131574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:02,105 DEBUG Processing 334/719 atomic regions from SNP 100094 to 100694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,315 DEBUG Processing 438/658 atomic regions from SNP 131274 to 131874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:02,399 DEBUG Processing 335/719 atomic regions from SNP 100394 to 100994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,589 DEBUG Processing 439/658 atomic regions from SNP 131574 to 132174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:02,677 DEBUG Processing 336/719 atomic regions from SNP 100694 to 101294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,864 DEBUG Processing 440/658 atomic regions from SNP 131874 to 132474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:02,956 DEBUG Processing 337/719 atomic regions from SNP 100994 to 101594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,137 DEBUG Processing 441/658 atomic regions from SNP 132174 to 132774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:03,234 DEBUG Processing 338/719 atomic regions from SNP 101294 to 101894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,410 DEBUG Processing 442/658 atomic regions from SNP 132474 to 133074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:03,511 DEBUG Processing 339/719 atomic regions from SNP 101594 to 102194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,684 DEBUG Processing 443/658 atomic regions from SNP 132774 to 133374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:03,789 DEBUG Processing 340/719 atomic regions from SNP 101894 to 102494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,959 DEBUG Processing 444/658 atomic regions from SNP 133074 to 133674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:04,066 DEBUG Processing 341/719 atomic regions from SNP 102194 to 102794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,234 DEBUG Processing 445/658 atomic regions from SNP 133374 to 133974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:04,343 DEBUG Processing 342/719 atomic regions from SNP 102494 to 103094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,510 DEBUG Processing 446/658 atomic regions from SNP 133674 to 134274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:04,622 DEBUG Processing 343/719 atomic regions from SNP 102794 to 103394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,785 DEBUG Processing 447/658 atomic regions from SNP 133974 to 134574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:04,908 DEBUG Processing 344/719 atomic regions from SNP 103094 to 103694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,063 DEBUG Processing 448/658 atomic regions from SNP 134274 to 134874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:05,205 DEBUG Processing 345/719 atomic regions from SNP 103394 to 103994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,338 DEBUG Processing 449/658 atomic regions from SNP 134574 to 135174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:05,485 DEBUG Processing 346/719 atomic regions from SNP 103694 to 104294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,613 DEBUG Processing 450/658 atomic regions from SNP 134874 to 135474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:05,766 DEBUG Processing 347/719 atomic regions from SNP 103994 to 104594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,884 DEBUG Processing 451/658 atomic regions from SNP 135174 to 135774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:06,064 DEBUG Processing 348/719 atomic regions from SNP 104294 to 104894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,154 DEBUG Processing 452/658 atomic regions from SNP 135474 to 136074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:06,367 DEBUG Processing 349/719 atomic regions from SNP 104594 to 105194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,426 DEBUG Processing 453/658 atomic regions from SNP 135774 to 136374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:06,656 DEBUG Processing 350/719 atomic regions from SNP 104894 to 105494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,698 DEBUG Processing 454/658 atomic regions from SNP 136074 to 136674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:06,963 DEBUG Processing 351/719 atomic regions from SNP 105194 to 105794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,964 DEBUG Processing 455/658 atomic regions from SNP 136374 to 136974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:07,236 DEBUG Processing 456/658 atomic regions from SNP 136674 to 137274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:07,268 DEBUG Processing 352/719 atomic regions from SNP 105494 to 106094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,507 DEBUG Processing 457/658 atomic regions from SNP 136974 to 137574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:07,548 DEBUG Processing 353/719 atomic regions from SNP 105794 to 106394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,781 DEBUG Processing 458/658 atomic regions from SNP 137274 to 137874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:07,855 DEBUG Processing 354/719 atomic regions from SNP 106094 to 106694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,055 DEBUG Processing 459/658 atomic regions from SNP 137574 to 138174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:08,147 DEBUG Processing 355/719 atomic regions from SNP 106394 to 106994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,334 DEBUG Processing 460/658 atomic regions from SNP 137874 to 138474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:08,439 DEBUG Processing 356/719 atomic regions from SNP 106694 to 107294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,616 DEBUG Processing 461/658 atomic regions from SNP 138174 to 138774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:08,723 DEBUG Processing 357/719 atomic regions from SNP 106994 to 107594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,895 DEBUG Processing 462/658 atomic regions from SNP 138474 to 139074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:09,006 DEBUG Processing 358/719 atomic regions from SNP 107294 to 107894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,182 DEBUG Processing 463/658 atomic regions from SNP 138774 to 139374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:09,325 DEBUG Processing 359/719 atomic regions from SNP 107594 to 108194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,461 DEBUG Processing 464/658 atomic regions from SNP 139074 to 139674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:09,647 DEBUG Processing 360/719 atomic regions from SNP 107894 to 108494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,749 DEBUG Processing 465/658 atomic regions from SNP 139374 to 139974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:09,966 DEBUG Processing 361/719 atomic regions from SNP 108194 to 108794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,033 DEBUG Processing 466/658 atomic regions from SNP 139674 to 140274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:10,284 DEBUG Processing 362/719 atomic regions from SNP 108494 to 109094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,310 DEBUG Processing 467/658 atomic regions from SNP 139974 to 140574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:10,604 DEBUG Processing 363/719 atomic regions from SNP 108794 to 109394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,604 DEBUG Processing 468/658 atomic regions from SNP 140274 to 140874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:10,921 DEBUG Processing 469/658 atomic regions from SNP 140574 to 141174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:10,954 DEBUG Processing 364/719 atomic regions from SNP 109094 to 109694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,197 DEBUG Processing 470/658 atomic regions from SNP 140874 to 141474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:11,263 DEBUG Processing 365/719 atomic regions from SNP 109394 to 109994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,467 DEBUG Processing 471/658 atomic regions from SNP 141174 to 141774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:11,559 DEBUG Processing 366/719 atomic regions from SNP 109694 to 110294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,729 DEBUG Processing 472/658 atomic regions from SNP 141474 to 142074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:11,848 DEBUG Processing 367/719 atomic regions from SNP 109994 to 110594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,991 DEBUG Processing 473/658 atomic regions from SNP 141774 to 142374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:12,139 DEBUG Processing 368/719 atomic regions from SNP 110294 to 110894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,255 DEBUG Processing 474/658 atomic regions from SNP 142074 to 142674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:12,445 DEBUG Processing 369/719 atomic regions from SNP 110594 to 111194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,522 DEBUG Processing 475/658 atomic regions from SNP 142374 to 142974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:12,754 DEBUG Processing 370/719 atomic regions from SNP 110894 to 111494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,794 DEBUG Processing 476/658 atomic regions from SNP 142674 to 143274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:13,072 DEBUG Processing 371/719 atomic regions from SNP 111194 to 111794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,074 DEBUG Processing 477/658 atomic regions from SNP 142974 to 143574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:13,356 DEBUG Processing 478/658 atomic regions from SNP 143274 to 143874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:13,388 DEBUG Processing 372/719 atomic regions from SNP 111494 to 112094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,635 DEBUG Processing 479/658 atomic regions from SNP 143574 to 144174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:13,683 DEBUG Processing 373/719 atomic regions from SNP 111794 to 112394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,914 DEBUG Processing 480/658 atomic regions from SNP 143874 to 144474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:13,983 DEBUG Processing 374/719 atomic regions from SNP 112094 to 112694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,184 DEBUG Processing 481/658 atomic regions from SNP 144174 to 144774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:14,292 DEBUG Processing 375/719 atomic regions from SNP 112394 to 112994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,449 DEBUG Processing 482/658 atomic regions from SNP 144474 to 145074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:14,587 DEBUG Processing 376/719 atomic regions from SNP 112694 to 113294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,707 DEBUG Processing 483/658 atomic regions from SNP 144774 to 145374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:14,854 DEBUG Processing 377/719 atomic regions from SNP 112994 to 113594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,964 DEBUG Processing 484/658 atomic regions from SNP 145074 to 145674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:15,003 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:55:15,146 DEBUG Processing 378/719 atomic regions from SNP 113294 to 113894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,239 DEBUG Processing 485/658 atomic regions from SNP 145374 to 145974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:15,427 DEBUG Processing 379/719 atomic regions from SNP 113594 to 114194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,501 DEBUG Processing 486/658 atomic regions from SNP 145674 to 146274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:15,712 DEBUG Processing 380/719 atomic regions from SNP 113894 to 114494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,759 DEBUG Processing 487/658 atomic regions from SNP 145974 to 146574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:16,000 DEBUG Processing 381/719 atomic regions from SNP 114194 to 114794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,018 DEBUG Processing 488/658 atomic regions from SNP 146274 to 146874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:16,268 DEBUG Processing 382/719 atomic regions from SNP 114494 to 115094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,278 DEBUG Processing 489/658 atomic regions from SNP 146574 to 147174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:16,530 DEBUG Processing 490/658 atomic regions from SNP 146874 to 147474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:16,531 DEBUG Processing 383/719 atomic regions from SNP 114794 to 115394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,782 DEBUG Processing 491/658 atomic regions from SNP 147174 to 147774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:16,790 DEBUG Processing 384/719 atomic regions from SNP 115094 to 115694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,041 DEBUG Processing 492/658 atomic regions from SNP 147474 to 148074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:17,058 DEBUG Processing 385/719 atomic regions from SNP 115394 to 115994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,301 DEBUG Processing 493/658 atomic regions from SNP 147774 to 148374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:17,322 DEBUG Processing 386/719 atomic regions from SNP 115694 to 116294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,563 DEBUG Processing 494/658 atomic regions from SNP 148074 to 148674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:17,587 DEBUG Processing 387/719 atomic regions from SNP 115994 to 116594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,825 DEBUG Processing 495/658 atomic regions from SNP 148374 to 148974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:17,852 DEBUG Processing 388/719 atomic regions from SNP 116294 to 116894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,090 DEBUG Processing 496/658 atomic regions from SNP 148674 to 149274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:18,119 DEBUG Processing 389/719 atomic regions from SNP 116594 to 117194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,359 DEBUG Processing 497/658 atomic regions from SNP 148974 to 149574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:18,392 DEBUG Processing 390/719 atomic regions from SNP 116894 to 117494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,625 DEBUG Processing 498/658 atomic regions from SNP 149274 to 149874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:18,662 DEBUG Processing 391/719 atomic regions from SNP 117194 to 117794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,887 DEBUG Processing 499/658 atomic regions from SNP 149574 to 150174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:18,926 DEBUG Processing 392/719 atomic regions from SNP 117494 to 118094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,152 DEBUG Processing 500/658 atomic regions from SNP 149874 to 150474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:19,194 DEBUG Processing 393/719 atomic regions from SNP 117794 to 118394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,417 DEBUG Processing 501/658 atomic regions from SNP 150174 to 150774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:19,462 DEBUG Processing 394/719 atomic regions from SNP 118094 to 118694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,682 DEBUG Processing 502/658 atomic regions from SNP 150474 to 151074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:19,729 DEBUG Processing 395/719 atomic regions from SNP 118394 to 118994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,946 DEBUG Processing 503/658 atomic regions from SNP 150774 to 151374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:19,995 DEBUG Processing 396/719 atomic regions from SNP 118694 to 119294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,210 DEBUG Processing 504/658 atomic regions from SNP 151074 to 151674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:20,260 DEBUG Processing 397/719 atomic regions from SNP 118994 to 119594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,475 DEBUG Processing 505/658 atomic regions from SNP 151374 to 151974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:20,524 DEBUG Processing 398/719 atomic regions from SNP 119294 to 119894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,735 DEBUG Processing 506/658 atomic regions from SNP 151674 to 152274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:20,786 DEBUG Processing 399/719 atomic regions from SNP 119594 to 120194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,997 DEBUG Processing 507/658 atomic regions from SNP 151974 to 152574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:21,049 DEBUG Processing 400/719 atomic regions from SNP 119894 to 120494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,259 DEBUG Processing 508/658 atomic regions from SNP 152274 to 152874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:21,311 DEBUG Processing 401/719 atomic regions from SNP 120194 to 120794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,521 DEBUG Processing 509/658 atomic regions from SNP 152574 to 153174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:21,574 DEBUG Processing 402/719 atomic regions from SNP 120494 to 121094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,782 DEBUG Processing 510/658 atomic regions from SNP 152874 to 153474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:21,869 DEBUG Processing 403/719 atomic regions from SNP 120794 to 121394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,043 DEBUG Processing 511/658 atomic regions from SNP 153174 to 153774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:22,168 DEBUG Processing 404/719 atomic regions from SNP 121094 to 121694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,308 DEBUG Processing 512/658 atomic regions from SNP 153474 to 154074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:22,456 DEBUG Processing 405/719 atomic regions from SNP 121394 to 121994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,568 DEBUG Processing 513/658 atomic regions from SNP 153774 to 154374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:22,724 DEBUG Processing 406/719 atomic regions from SNP 121694 to 122294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,826 DEBUG Processing 514/658 atomic regions from SNP 154074 to 154674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:22,995 DEBUG Processing 407/719 atomic regions from SNP 121994 to 122594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,084 DEBUG Processing 515/658 atomic regions from SNP 154374 to 154974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:23,266 DEBUG Processing 408/719 atomic regions from SNP 122294 to 122894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,338 DEBUG Processing 516/658 atomic regions from SNP 154674 to 155274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:23,557 DEBUG Processing 409/719 atomic regions from SNP 122594 to 123194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,593 DEBUG Processing 517/658 atomic regions from SNP 154974 to 155574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:23,825 DEBUG Processing 410/719 atomic regions from SNP 122894 to 123494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,847 DEBUG Processing 518/658 atomic regions from SNP 155274 to 155874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:24,089 DEBUG Processing 411/719 atomic regions from SNP 123194 to 123794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,101 DEBUG Processing 519/658 atomic regions from SNP 155574 to 156174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:24,355 DEBUG Processing 520/658 atomic regions from SNP 155874 to 156474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:24,355 DEBUG Processing 412/719 atomic regions from SNP 123494 to 124094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,613 DEBUG Processing 521/658 atomic regions from SNP 156174 to 156774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:24,624 DEBUG Processing 413/719 atomic regions from SNP 123794 to 124394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,870 DEBUG Processing 522/658 atomic regions from SNP 156474 to 157074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:24,907 DEBUG Processing 414/719 atomic regions from SNP 124094 to 124694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,125 DEBUG Processing 523/658 atomic regions from SNP 156774 to 157374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:25,189 DEBUG Processing 415/719 atomic regions from SNP 124394 to 124994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,384 DEBUG Processing 524/658 atomic regions from SNP 157074 to 157674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:25,472 DEBUG Processing 416/719 atomic regions from SNP 124694 to 125294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,643 DEBUG Processing 525/658 atomic regions from SNP 157374 to 157974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:25,730 DEBUG Processing 417/719 atomic regions from SNP 124994 to 125594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,902 DEBUG Processing 526/658 atomic regions from SNP 157674 to 158274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:25,991 DEBUG Processing 418/719 atomic regions from SNP 125294 to 125894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,162 DEBUG Processing 527/658 atomic regions from SNP 157974 to 158574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:26,249 DEBUG Processing 419/719 atomic regions from SNP 125594 to 126194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,422 DEBUG Processing 528/658 atomic regions from SNP 158274 to 158874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:26,507 DEBUG Processing 420/719 atomic regions from SNP 125894 to 126494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,682 DEBUG Processing 529/658 atomic regions from SNP 158574 to 159174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:26,765 DEBUG Processing 421/719 atomic regions from SNP 126194 to 126794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,941 DEBUG Processing 530/658 atomic regions from SNP 158874 to 159474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:27,022 DEBUG Processing 422/719 atomic regions from SNP 126494 to 127094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,198 DEBUG Processing 531/658 atomic regions from SNP 159174 to 159774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:27,280 DEBUG Processing 423/719 atomic regions from SNP 126794 to 127394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,457 DEBUG Processing 532/658 atomic regions from SNP 159474 to 160074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:27,540 DEBUG Processing 424/719 atomic regions from SNP 127094 to 127694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,714 DEBUG Processing 533/658 atomic regions from SNP 159774 to 160374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:27,797 DEBUG Processing 425/719 atomic regions from SNP 127394 to 127994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,971 DEBUG Processing 534/658 atomic regions from SNP 160074 to 160674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:28,053 DEBUG Processing 426/719 atomic regions from SNP 127694 to 128294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,228 DEBUG Processing 535/658 atomic regions from SNP 160374 to 160974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:28,309 DEBUG Processing 427/719 atomic regions from SNP 127994 to 128594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,485 DEBUG Processing 536/658 atomic regions from SNP 160674 to 161274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:28,565 DEBUG Processing 428/719 atomic regions from SNP 128294 to 128894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,764 DEBUG Processing 537/658 atomic regions from SNP 160974 to 161574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:28,822 DEBUG Processing 429/719 atomic regions from SNP 128594 to 129194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,036 DEBUG Processing 538/658 atomic regions from SNP 161274 to 161874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:29,080 DEBUG Processing 430/719 atomic regions from SNP 128894 to 129494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,292 DEBUG Processing 539/658 atomic regions from SNP 161574 to 162174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:29,349 DEBUG Processing 431/719 atomic regions from SNP 129194 to 129794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,549 DEBUG Processing 540/658 atomic regions from SNP 161874 to 162474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:29,636 DEBUG Processing 432/719 atomic regions from SNP 129494 to 130094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,807 DEBUG Processing 541/658 atomic regions from SNP 162174 to 162774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:29,925 DEBUG Processing 433/719 atomic regions from SNP 129794 to 130394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,068 DEBUG Processing 542/658 atomic regions from SNP 162474 to 163074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:30,185 DEBUG Processing 434/719 atomic regions from SNP 130094 to 130694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,323 DEBUG Processing 543/658 atomic regions from SNP 162774 to 163374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:30,444 DEBUG Processing 435/719 atomic regions from SNP 130394 to 130994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,577 DEBUG Processing 544/658 atomic regions from SNP 163074 to 163674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:30,701 DEBUG Processing 436/719 atomic regions from SNP 130694 to 131294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,820 DEBUG Processing 545/658 atomic regions from SNP 163374 to 163974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:30,950 DEBUG Processing 437/719 atomic regions from SNP 130994 to 131594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,066 DEBUG Processing 546/658 atomic regions from SNP 163674 to 164274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:31,203 DEBUG Processing 438/719 atomic regions from SNP 131294 to 131894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,313 DEBUG Processing 547/658 atomic regions from SNP 163974 to 164574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:31,461 DEBUG Processing 439/719 atomic regions from SNP 131594 to 132194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,564 DEBUG Processing 548/658 atomic regions from SNP 164274 to 164874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:31,722 DEBUG Processing 440/719 atomic regions from SNP 131894 to 132494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,824 DEBUG Processing 549/658 atomic regions from SNP 164574 to 165174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:31,989 DEBUG Processing 441/719 atomic regions from SNP 132194 to 132794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,082 DEBUG Processing 550/658 atomic regions from SNP 164874 to 165474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:32,251 DEBUG Processing 442/719 atomic regions from SNP 132494 to 133094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,328 DEBUG Processing 551/658 atomic regions from SNP 165174 to 165774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:32,505 DEBUG Processing 443/719 atomic regions from SNP 132794 to 133394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,571 DEBUG Processing 552/658 atomic regions from SNP 165474 to 166074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:32,769 DEBUG Processing 444/719 atomic regions from SNP 133094 to 133694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,830 DEBUG Processing 553/658 atomic regions from SNP 165774 to 166374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:33,036 DEBUG Processing 445/719 atomic regions from SNP 133394 to 133994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,091 DEBUG Processing 554/658 atomic regions from SNP 166074 to 166674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:33,296 DEBUG Processing 446/719 atomic regions from SNP 133694 to 134294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,344 DEBUG Processing 555/658 atomic regions from SNP 166374 to 166974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:33,582 DEBUG Processing 447/719 atomic regions from SNP 133994 to 134594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,616 DEBUG Processing 556/658 atomic regions from SNP 166674 to 167274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:33,879 DEBUG Processing 448/719 atomic regions from SNP 134294 to 134894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,889 DEBUG Processing 557/658 atomic regions from SNP 166974 to 167574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:34,151 DEBUG Processing 558/658 atomic regions from SNP 167274 to 167874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:34,164 DEBUG Processing 449/719 atomic regions from SNP 134594 to 135194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,402 DEBUG Processing 559/658 atomic regions from SNP 167574 to 168174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:34,438 DEBUG Processing 450/719 atomic regions from SNP 134894 to 135494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,655 DEBUG Processing 560/658 atomic regions from SNP 167874 to 168474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:34,719 DEBUG Processing 451/719 atomic regions from SNP 135194 to 135794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,921 DEBUG Processing 561/658 atomic regions from SNP 168174 to 168774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:34,992 DEBUG Processing 452/719 atomic regions from SNP 135494 to 136094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,202 DEBUG Processing 562/658 atomic regions from SNP 168474 to 169074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:35,274 DEBUG Processing 453/719 atomic regions from SNP 135794 to 136394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,467 DEBUG Processing 563/658 atomic regions from SNP 168774 to 169374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:35,545 DEBUG Processing 454/719 atomic regions from SNP 136094 to 136694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,729 DEBUG Processing 564/658 atomic regions from SNP 169074 to 169674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:35,812 DEBUG Processing 455/719 atomic regions from SNP 136394 to 136994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,980 DEBUG Processing 565/658 atomic regions from SNP 169374 to 169974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:36,068 DEBUG Processing 456/719 atomic regions from SNP 136694 to 137294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,235 DEBUG Processing 566/658 atomic regions from SNP 169674 to 170274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:36,349 DEBUG Processing 457/719 atomic regions from SNP 136994 to 137594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,506 DEBUG Processing 567/658 atomic regions from SNP 169974 to 170574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:36,619 DEBUG Processing 458/719 atomic regions from SNP 137294 to 137894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,772 DEBUG Processing 568/658 atomic regions from SNP 170274 to 170874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:36,887 DEBUG Processing 459/719 atomic regions from SNP 137594 to 138194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,038 DEBUG Processing 569/658 atomic regions from SNP 170574 to 171174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:37,163 DEBUG Processing 460/719 atomic regions from SNP 137894 to 138494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,321 DEBUG Processing 570/658 atomic regions from SNP 170874 to 171474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:37,457 DEBUG Processing 461/719 atomic regions from SNP 138194 to 138794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,601 DEBUG Processing 571/658 atomic regions from SNP 171174 to 171774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:37,746 DEBUG Processing 462/719 atomic regions from SNP 138494 to 139094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,872 DEBUG Processing 572/658 atomic regions from SNP 171474 to 172074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:38,022 DEBUG Processing 463/719 atomic regions from SNP 138794 to 139394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,140 DEBUG Processing 573/658 atomic regions from SNP 171774 to 172374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:38,300 DEBUG Processing 464/719 atomic regions from SNP 139094 to 139694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,409 DEBUG Processing 574/658 atomic regions from SNP 172074 to 172674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:38,574 DEBUG Processing 465/719 atomic regions from SNP 139394 to 139994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,679 DEBUG Processing 575/658 atomic regions from SNP 172374 to 172974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:38,849 DEBUG Processing 466/719 atomic regions from SNP 139694 to 140294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,949 DEBUG Processing 576/658 atomic regions from SNP 172674 to 173274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:39,124 DEBUG Processing 467/719 atomic regions from SNP 139994 to 140594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,219 DEBUG Processing 577/658 atomic regions from SNP 172974 to 173574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:39,400 DEBUG Processing 468/719 atomic regions from SNP 140294 to 140894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,490 DEBUG Processing 578/658 atomic regions from SNP 173274 to 173874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:39,675 DEBUG Processing 469/719 atomic regions from SNP 140594 to 141194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,759 DEBUG Processing 579/658 atomic regions from SNP 173574 to 174174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:39,954 DEBUG Processing 470/719 atomic regions from SNP 140894 to 141494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,037 DEBUG Processing 580/658 atomic regions from SNP 173874 to 174474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:40,227 DEBUG Processing 471/719 atomic regions from SNP 141194 to 141794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,296 DEBUG Processing 581/658 atomic regions from SNP 174174 to 174774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:40,494 DEBUG Processing 472/719 atomic regions from SNP 141494 to 142094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,552 DEBUG Processing 582/658 atomic regions from SNP 174474 to 175074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:40,761 DEBUG Processing 473/719 atomic regions from SNP 141794 to 142394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,803 DEBUG Processing 583/658 atomic regions from SNP 174774 to 175374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:41,026 DEBUG Processing 474/719 atomic regions from SNP 142094 to 142694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,053 DEBUG Processing 584/658 atomic regions from SNP 175074 to 175674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:41,293 DEBUG Processing 475/719 atomic regions from SNP 142394 to 142994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,309 DEBUG Processing 585/658 atomic regions from SNP 175374 to 175974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:41,561 DEBUG Processing 476/719 atomic regions from SNP 142694 to 143294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,567 DEBUG Processing 586/658 atomic regions from SNP 175674 to 176274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:41,824 DEBUG Processing 587/658 atomic regions from SNP 175974 to 176574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:41,826 DEBUG Processing 477/719 atomic regions from SNP 142994 to 143594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,084 DEBUG Processing 588/658 atomic regions from SNP 176274 to 176874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:42,092 DEBUG Processing 478/719 atomic regions from SNP 143294 to 143894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,341 DEBUG Processing 589/658 atomic regions from SNP 176574 to 177174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:42,355 DEBUG Processing 479/719 atomic regions from SNP 143594 to 144194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,595 DEBUG Processing 590/658 atomic regions from SNP 176874 to 177474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:42,615 DEBUG Processing 480/719 atomic regions from SNP 143894 to 144494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,841 DEBUG Processing 591/658 atomic regions from SNP 177174 to 177774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:42,867 DEBUG Processing 481/719 atomic regions from SNP 144194 to 144794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,088 DEBUG Processing 592/658 atomic regions from SNP 177474 to 178074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:43,120 DEBUG Processing 482/719 atomic regions from SNP 144494 to 145094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,332 DEBUG Processing 593/658 atomic regions from SNP 177774 to 178374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:43,371 DEBUG Processing 483/719 atomic regions from SNP 144794 to 145394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,585 DEBUG Processing 594/658 atomic regions from SNP 178074 to 178674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:43,632 DEBUG Processing 484/719 atomic regions from SNP 145094 to 145694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,650 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:55:43,687 DEBUG chr13: Signal quantile: 0.989. signal threshold: 16. Best RMSEA: 0.016 2025-01-31 09:55:43,861 DEBUG Processing 595/658 atomic regions from SNP 178374 to 178974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:43,915 DEBUG Processing 485/719 atomic regions from SNP 145394 to 145994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,142 DEBUG Processing 596/658 atomic regions from SNP 178674 to 179274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:44,199 DEBUG Processing 486/719 atomic regions from SNP 145694 to 146294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,407 DEBUG Processing 597/658 atomic regions from SNP 178974 to 179574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:44,470 DEBUG Processing 487/719 atomic regions from SNP 145994 to 146594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,670 DEBUG Processing 598/658 atomic regions from SNP 179274 to 179874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:44,738 DEBUG Processing 488/719 atomic regions from SNP 146294 to 146894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,921 DEBUG Processing 599/658 atomic regions from SNP 179574 to 180174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:44,994 DEBUG Processing 489/719 atomic regions from SNP 146594 to 147194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,170 DEBUG Processing 600/658 atomic regions from SNP 179874 to 180474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:45,254 DEBUG Processing 490/719 atomic regions from SNP 146894 to 147494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,417 DEBUG Processing 601/658 atomic regions from SNP 180174 to 180774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:45,506 DEBUG Processing 491/719 atomic regions from SNP 147194 to 147794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,664 DEBUG Processing 602/658 atomic regions from SNP 180474 to 181074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:45,761 DEBUG Processing 492/719 atomic regions from SNP 147494 to 148094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,919 DEBUG Processing 603/658 atomic regions from SNP 180774 to 181374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:46,029 DEBUG Processing 493/719 atomic regions from SNP 147794 to 148394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,178 DEBUG Processing 604/658 atomic regions from SNP 181074 to 181674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:46,309 DEBUG Processing 494/719 atomic regions from SNP 148094 to 148694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,388 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:55:46,419 DEBUG chr11: Signal quantile: 0.982. signal threshold: 16. Best RMSEA: 0.013 2025-01-31 09:55:46,462 DEBUG Processing 605/658 atomic regions from SNP 181374 to 181974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:46,598 DEBUG Processing 495/719 atomic regions from SNP 148394 to 148994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,741 DEBUG Processing 606/658 atomic regions from SNP 181674 to 182274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:46,882 DEBUG Processing 496/719 atomic regions from SNP 148694 to 149294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,019 DEBUG Processing 607/658 atomic regions from SNP 181974 to 182574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:47,162 DEBUG Processing 497/719 atomic regions from SNP 148994 to 149594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,281 DEBUG Processing 608/658 atomic regions from SNP 182274 to 182874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:47,433 DEBUG Processing 498/719 atomic regions from SNP 149294 to 149894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,467 DEBUG chr13 total SNP count: 202983 2025-01-31 09:55:47,467 DEBUG chr13 length: 120421639 2025-01-31 09:55:47,467 DEBUG ----------------------------------------- 2025-01-31 09:55:47,467 INFO Processing SNPs in chr13 2025-01-31 09:55:47,549 DEBUG Processing 609/658 atomic regions from SNP 182574 to 183174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:47,667 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 202983)] 2025-01-31 09:55:47,718 DEBUG Processing 499/719 atomic regions from SNP 149594 to 150194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,799 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:47,819 DEBUG Processing 610/658 atomic regions from SNP 182874 to 183474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:47,990 DEBUG Processing 500/719 atomic regions from SNP 149894 to 150494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,079 DEBUG Processing 611/658 atomic regions from SNP 183174 to 183774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:48,257 DEBUG Processing 501/719 atomic regions from SNP 150194 to 150794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,334 DEBUG Processing 612/658 atomic regions from SNP 183474 to 184074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:48,524 DEBUG Processing 502/719 atomic regions from SNP 150494 to 151094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,592 DEBUG Processing 613/658 atomic regions from SNP 183774 to 184374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:48,790 DEBUG Processing 503/719 atomic regions from SNP 150794 to 151394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,850 DEBUG Processing 614/658 atomic regions from SNP 184074 to 184674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:49,081 DEBUG Processing 504/719 atomic regions from SNP 151094 to 151694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,128 DEBUG Processing 615/658 atomic regions from SNP 184374 to 184974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:49,370 DEBUG Processing 505/719 atomic regions from SNP 151394 to 151994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,407 DEBUG Processing 616/658 atomic regions from SNP 184674 to 185274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:49,648 DEBUG Processing 506/719 atomic regions from SNP 151694 to 152294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,674 DEBUG Processing 617/658 atomic regions from SNP 184974 to 185574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:49,918 DEBUG Processing 507/719 atomic regions from SNP 151994 to 152594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,936 DEBUG Processing 618/658 atomic regions from SNP 185274 to 185874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:50,210 DEBUG Processing 508/719 atomic regions from SNP 152294 to 152894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,218 DEBUG Processing 619/658 atomic regions from SNP 185574 to 186174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:50,495 DEBUG Processing 509/719 atomic regions from SNP 152594 to 153194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,496 DEBUG Processing 620/658 atomic regions from SNP 185874 to 186474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:50,676 DEBUG chr11 total SNP count: 211704 2025-01-31 09:55:50,676 DEBUG chr11 length: 122082543 2025-01-31 09:55:50,676 DEBUG ----------------------------------------- 2025-01-31 09:55:50,676 INFO Processing SNPs in chr11 2025-01-31 09:55:50,778 DEBUG Processing 621/658 atomic regions from SNP 186174 to 186774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:50,784 DEBUG Processing 510/719 atomic regions from SNP 152894 to 153494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,883 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 211704)] 2025-01-31 09:55:51,020 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:51,055 DEBUG Processing 622/658 atomic regions from SNP 186474 to 187074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:51,067 DEBUG Processing 511/719 atomic regions from SNP 153194 to 153794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,331 DEBUG Processing 623/658 atomic regions from SNP 186774 to 187374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:51,348 DEBUG Processing 512/719 atomic regions from SNP 153494 to 154094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,605 DEBUG Processing 624/658 atomic regions from SNP 187074 to 187674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:51,629 DEBUG Processing 513/719 atomic regions from SNP 153794 to 154394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,882 DEBUG Processing 625/658 atomic regions from SNP 187374 to 187974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:51,910 DEBUG Processing 514/719 atomic regions from SNP 154094 to 154694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:52,173 DEBUG Processing 626/658 atomic regions from SNP 187674 to 188274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:52,203 DEBUG Processing 515/719 atomic regions from SNP 154394 to 154994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:52,448 DEBUG Processing 627/658 atomic regions from SNP 187974 to 188574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:52,485 DEBUG Processing 516/719 atomic regions from SNP 154694 to 155294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:52,726 DEBUG Processing 628/658 atomic regions from SNP 188274 to 188874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:52,769 DEBUG Processing 517/719 atomic regions from SNP 154994 to 155594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,005 DEBUG Processing 629/658 atomic regions from SNP 188574 to 189174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:53,052 DEBUG Processing 518/719 atomic regions from SNP 155294 to 155894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,282 DEBUG Processing 630/658 atomic regions from SNP 188874 to 189474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:53,332 DEBUG Processing 519/719 atomic regions from SNP 155594 to 156194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,559 DEBUG Processing 631/658 atomic regions from SNP 189174 to 189774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:53,613 DEBUG Processing 520/719 atomic regions from SNP 155894 to 156494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,836 DEBUG Processing 632/658 atomic regions from SNP 189474 to 190074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:53,895 DEBUG Processing 521/719 atomic regions from SNP 156194 to 156794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,112 DEBUG Processing 633/658 atomic regions from SNP 189774 to 190374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:54,174 DEBUG Processing 522/719 atomic regions from SNP 156494 to 157094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,388 DEBUG Processing 634/658 atomic regions from SNP 190074 to 190674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:54,462 DEBUG Processing 523/719 atomic regions from SNP 156794 to 157394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,683 DEBUG Processing 635/658 atomic regions from SNP 190374 to 190974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:54,752 DEBUG Processing 524/719 atomic regions from SNP 157094 to 157694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,957 DEBUG Processing 636/658 atomic regions from SNP 190674 to 191274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:55,031 DEBUG Processing 525/719 atomic regions from SNP 157394 to 157994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,228 DEBUG Processing 637/658 atomic regions from SNP 190974 to 191574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:55,308 DEBUG Processing 526/719 atomic regions from SNP 157694 to 158294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,504 DEBUG Processing 638/658 atomic regions from SNP 191274 to 191874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:55,594 DEBUG Processing 527/719 atomic regions from SNP 157994 to 158594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,786 DEBUG Processing 639/658 atomic regions from SNP 191574 to 192174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:55,880 DEBUG Processing 528/719 atomic regions from SNP 158294 to 158894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,082 DEBUG Processing 640/658 atomic regions from SNP 191874 to 192474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:56,166 DEBUG Processing 529/719 atomic regions from SNP 158594 to 159194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,382 DEBUG Processing 641/658 atomic regions from SNP 192174 to 192774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:56,443 DEBUG Processing 530/719 atomic regions from SNP 158894 to 159494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,676 DEBUG Processing 642/658 atomic regions from SNP 192474 to 193074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:56,744 DEBUG Processing 531/719 atomic regions from SNP 159194 to 159794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,013 DEBUG Processing 643/658 atomic regions from SNP 192774 to 193374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:57,067 DEBUG Processing 532/719 atomic regions from SNP 159494 to 160094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,297 DEBUG Processing 644/658 atomic regions from SNP 193074 to 193674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:57,333 DEBUG Processing 533/719 atomic regions from SNP 159794 to 160394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,590 DEBUG Processing 645/658 atomic regions from SNP 193374 to 193974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:57,613 DEBUG Processing 534/719 atomic regions from SNP 160094 to 160694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,894 DEBUG Processing 646/658 atomic regions from SNP 193674 to 194274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:57,900 DEBUG Processing 535/719 atomic regions from SNP 160394 to 160994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,174 DEBUG Processing 647/658 atomic regions from SNP 193974 to 194574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:58,187 DEBUG Processing 536/719 atomic regions from SNP 160694 to 161294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,454 DEBUG Processing 648/658 atomic regions from SNP 194274 to 194874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:58,473 DEBUG Processing 537/719 atomic regions from SNP 160994 to 161594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,733 DEBUG Processing 649/658 atomic regions from SNP 194574 to 195174 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:58,759 DEBUG Processing 538/719 atomic regions from SNP 161294 to 161894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,011 DEBUG Processing 650/658 atomic regions from SNP 194874 to 195474 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:59,043 DEBUG Processing 539/719 atomic regions from SNP 161594 to 162194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,297 DEBUG Processing 651/658 atomic regions from SNP 195174 to 195774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:59,341 DEBUG Processing 540/719 atomic regions from SNP 161894 to 162494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,570 DEBUG Processing 652/658 atomic regions from SNP 195474 to 196074 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:59,617 DEBUG Processing 541/719 atomic regions from SNP 162194 to 162794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,836 DEBUG Processing 653/658 atomic regions from SNP 195774 to 196374 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:59,886 DEBUG Processing 542/719 atomic regions from SNP 162494 to 163094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,063 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:56:00,107 DEBUG Processing 654/658 atomic regions from SNP 196074 to 196674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:00,168 DEBUG Processing 543/719 atomic regions from SNP 162794 to 163394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,385 DEBUG Processing 655/658 atomic regions from SNP 196374 to 196974 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:00,446 DEBUG Processing 544/719 atomic regions from SNP 163094 to 163694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,651 DEBUG Processing 656/658 atomic regions from SNP 196674 to 197274 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:00,739 DEBUG Processing 545/719 atomic regions from SNP 163394 to 163994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,913 DEBUG Processing 657/658 atomic regions from SNP 196974 to 197574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:01,023 DEBUG Processing 546/719 atomic regions from SNP 163694 to 164294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,173 DEBUG Processing 658/658 atomic regions from SNP 197274 to 197874 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:01,290 DEBUG Processing 547/719 atomic regions from SNP 163994 to 164594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,352 DEBUG Unique SNPs positions in subchromosome 2: 197875 2025-01-31 09:56:01,558 DEBUG Processing 548/719 atomic regions from SNP 164294 to 164894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,834 DEBUG Processing 549/719 atomic regions from SNP 164594 to 165194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,120 DEBUG Processing 550/719 atomic regions from SNP 164894 to 165494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,412 DEBUG Processing 551/719 atomic regions from SNP 165194 to 165794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,696 DEBUG Processing 552/719 atomic regions from SNP 165494 to 166094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,986 DEBUG Processing 553/719 atomic regions from SNP 165794 to 166394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,254 DEBUG Processing 554/719 atomic regions from SNP 166094 to 166694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,519 DEBUG Processing 555/719 atomic regions from SNP 166394 to 166994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,783 DEBUG Processing 556/719 atomic regions from SNP 166694 to 167294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,047 DEBUG Processing 557/719 atomic regions from SNP 166994 to 167594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,311 DEBUG Processing 558/719 atomic regions from SNP 167294 to 167894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,578 DEBUG Processing 559/719 atomic regions from SNP 167594 to 168194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,844 DEBUG Processing 560/719 atomic regions from SNP 167894 to 168494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,109 DEBUG Processing 561/719 atomic regions from SNP 168194 to 168794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,375 DEBUG Processing 562/719 atomic regions from SNP 168494 to 169094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,640 DEBUG Processing 563/719 atomic regions from SNP 168794 to 169394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,906 DEBUG Processing 564/719 atomic regions from SNP 169094 to 169694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,170 DEBUG Processing 565/719 atomic regions from SNP 169394 to 169994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,435 DEBUG Processing 566/719 atomic regions from SNP 169694 to 170294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,703 DEBUG Processing 567/719 atomic regions from SNP 169994 to 170594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,976 DEBUG Processing 568/719 atomic regions from SNP 170294 to 170894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,251 DEBUG Processing 569/719 atomic regions from SNP 170594 to 171194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,534 DEBUG Processing 570/719 atomic regions from SNP 170894 to 171494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,798 DEBUG Processing 571/719 atomic regions from SNP 171194 to 171794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,063 DEBUG Processing 572/719 atomic regions from SNP 171494 to 172094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,326 DEBUG Processing 573/719 atomic regions from SNP 171794 to 172394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,593 DEBUG Processing 574/719 atomic regions from SNP 172094 to 172694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,867 DEBUG Processing 575/719 atomic regions from SNP 172394 to 172994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,147 DEBUG Processing 576/719 atomic regions from SNP 172694 to 173294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,436 DEBUG Processing 577/719 atomic regions from SNP 172994 to 173594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,702 DEBUG Processing 578/719 atomic regions from SNP 173294 to 173894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,982 DEBUG Processing 579/719 atomic regions from SNP 173594 to 174194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,270 DEBUG Processing 580/719 atomic regions from SNP 173894 to 174494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,546 DEBUG Processing 581/719 atomic regions from SNP 174194 to 174794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,785 DEBUG Subchromosome time: 217.85256726597436, subchromosome SNPs: 197875 2025-01-31 09:56:10,786 DEBUG Estimated BADs: [0.33, 1.97, 9.86, 3.94, 5.92, 1.97, 0.49, 1.97, 3.94, 0.66, 9.86, 1.97, 13.81, 3.94, 0.39, 1.97, 0.39, 0.99, 1.97, 0.66, 1.97, 5.92, 1.97] SNP counts: [139, 20986, 3797, 15669, 9023, 3273, 5419, 5086, 6316, 2002, 2792, 2127, 2413, 43748, 9910, 2699, 17708, 7191, 6001, 19879, 5800, 1332, 4704] SNP IDs counts: [139, 20986, 3797, 15669, 9023, 3273, 5419, 5086, 6316, 2002, 2792, 2127, 2413, 43748, 9910, 2699, 17708, 7191, 6001, 19879, 5800, 1332, 4704] Critical gap: 624951bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.13Mbp[0.71Mbp], 19.69Mbp, 21.68Mbp, 30.54Mbp, 35.33Mbp, 37.20Mbp, 40.44Mbp, 46.11Mbp, 49.49Mbp, 50.78Mbp, 52.45Mbp, 54.36Mbp, 55.64Mbp, 79.88Mbp, 86.17Mbp, 87.65Mbp, 98.55Mbp, 102.55Mbp, 105.99Mbp, 118.09Mbp, 121.26Mbp, 121.95Mbp, 124.90Mbp] 2025-01-31 09:56:10,786 DEBUG chr14 time: 217.85305918601807 s 2025-01-31 09:56:10,818 DEBUG Processing 582/719 atomic regions from SNP 174494 to 175094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,964 DEBUG chr14: Fitting background model for 23 segments 2025-01-31 09:56:11,092 DEBUG Processing 583/719 atomic regions from SNP 174794 to 175394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,364 DEBUG Processing 584/719 atomic regions from SNP 175094 to 175694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,646 DEBUG Processing 585/719 atomic regions from SNP 175394 to 175994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,918 DEBUG Processing 586/719 atomic regions from SNP 175694 to 176294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,031 DEBUG Segmenting atomic regions: 2025-01-31 09:56:12,118 DEBUG Processing 1/675 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,186 DEBUG Processing 587/719 atomic regions from SNP 175994 to 176594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,384 DEBUG Processing 2/675 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,467 DEBUG Processing 588/719 atomic regions from SNP 176294 to 176894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,673 DEBUG Processing 3/675 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,758 DEBUG Processing 589/719 atomic regions from SNP 176594 to 177194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,981 DEBUG Processing 4/675 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,042 DEBUG Processing 590/719 atomic regions from SNP 176894 to 177494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,262 DEBUG Processing 5/675 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,323 DEBUG Processing 591/719 atomic regions from SNP 177194 to 177794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,537 DEBUG Processing 6/675 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,628 DEBUG Processing 592/719 atomic regions from SNP 177494 to 178094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,807 DEBUG Processing 7/675 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,924 DEBUG Processing 593/719 atomic regions from SNP 177794 to 178394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,085 DEBUG Processing 8/675 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,204 DEBUG Processing 594/719 atomic regions from SNP 178094 to 178694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,357 DEBUG Processing 9/675 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,491 DEBUG Processing 595/719 atomic regions from SNP 178394 to 178994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,636 DEBUG Processing 10/675 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,774 DEBUG Processing 596/719 atomic regions from SNP 178694 to 179294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,914 DEBUG Processing 11/675 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,064 DEBUG Processing 597/719 atomic regions from SNP 178994 to 179594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,202 DEBUG Processing 12/675 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,345 DEBUG Processing 598/719 atomic regions from SNP 179294 to 179894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,472 DEBUG Processing 13/675 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,618 DEBUG Processing 599/719 atomic regions from SNP 179594 to 180194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,750 DEBUG Processing 14/675 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,901 DEBUG Processing 600/719 atomic regions from SNP 179894 to 180494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,022 DEBUG Processing 15/675 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,190 DEBUG Processing 601/719 atomic regions from SNP 180194 to 180794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,226 DEBUG Segmenting atomic regions: 2025-01-31 09:56:16,295 DEBUG Processing 16/675 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,316 DEBUG Processing 1/704 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,476 DEBUG Processing 602/719 atomic regions from SNP 180494 to 181094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,572 DEBUG Processing 17/675 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,618 DEBUG Processing 2/704 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,763 DEBUG Processing 603/719 atomic regions from SNP 180794 to 181394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,848 DEBUG Processing 18/675 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,907 DEBUG Processing 3/704 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,049 DEBUG Processing 604/719 atomic regions from SNP 181094 to 181694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,123 DEBUG Processing 19/675 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,188 DEBUG Processing 4/704 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,334 DEBUG Processing 605/719 atomic regions from SNP 181394 to 181994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,398 DEBUG Processing 20/675 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,470 DEBUG Processing 5/704 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,624 DEBUG Processing 606/719 atomic regions from SNP 181694 to 182294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,674 DEBUG Processing 21/675 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,758 DEBUG Processing 6/704 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,916 DEBUG Processing 607/719 atomic regions from SNP 181994 to 182594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,944 DEBUG Processing 22/675 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,054 DEBUG Processing 7/704 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,200 DEBUG Processing 608/719 atomic regions from SNP 182294 to 182894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,221 DEBUG Processing 23/675 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,353 DEBUG Processing 8/704 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,479 DEBUG Processing 609/719 atomic regions from SNP 182594 to 183194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,495 DEBUG Processing 24/675 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,628 DEBUG Processing 9/704 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,764 DEBUG Processing 610/719 atomic regions from SNP 182894 to 183494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,768 DEBUG Processing 25/675 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,899 DEBUG Processing 10/704 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,041 DEBUG Processing 26/675 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,067 DEBUG Processing 611/719 atomic regions from SNP 183194 to 183794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,183 DEBUG Processing 11/704 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,316 DEBUG Processing 27/675 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,374 DEBUG Processing 612/719 atomic regions from SNP 183494 to 184094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,477 DEBUG Processing 12/704 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,590 DEBUG Processing 28/675 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,676 DEBUG Processing 613/719 atomic regions from SNP 183794 to 184394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,774 DEBUG Processing 13/704 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,859 DEBUG Processing 29/675 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,950 DEBUG Processing 614/719 atomic regions from SNP 184094 to 184694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,050 DEBUG Processing 14/704 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,127 DEBUG Processing 30/675 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,248 DEBUG Processing 615/719 atomic regions from SNP 184394 to 184994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,320 DEBUG Processing 15/704 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,394 DEBUG Processing 31/675 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,521 DEBUG Processing 616/719 atomic regions from SNP 184694 to 185294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,584 DEBUG Processing 16/704 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,653 DEBUG Processing 32/675 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,802 DEBUG Processing 617/719 atomic regions from SNP 184994 to 185594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,870 DEBUG Processing 17/704 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,924 DEBUG Processing 33/675 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,099 DEBUG Processing 618/719 atomic regions from SNP 185294 to 185894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:21,158 DEBUG Processing 18/704 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,187 DEBUG Processing 34/675 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,351 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:56:21,386 DEBUG chr12: Signal quantile: 0.991. signal threshold: 14. Best RMSEA: 0.021 2025-01-31 09:56:21,433 DEBUG Processing 619/719 atomic regions from SNP 185594 to 186194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:21,440 DEBUG Processing 19/704 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,506 DEBUG Processing 35/675 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,753 DEBUG Processing 20/704 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,768 DEBUG Processing 620/719 atomic regions from SNP 185894 to 186494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:21,801 DEBUG Processing 36/675 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,060 DEBUG Processing 21/704 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,080 DEBUG Processing 621/719 atomic regions from SNP 186194 to 186794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:22,081 DEBUG Processing 37/675 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,359 DEBUG Processing 38/675 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,361 DEBUG Processing 22/704 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,398 DEBUG Processing 622/719 atomic regions from SNP 186494 to 187094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:22,635 DEBUG Processing 23/704 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,637 DEBUG Processing 39/675 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,708 DEBUG Processing 623/719 atomic regions from SNP 186794 to 187394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:22,909 DEBUG Processing 24/704 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,912 DEBUG Processing 40/675 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,017 DEBUG Processing 624/719 atomic regions from SNP 187094 to 187694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:23,184 DEBUG Processing 25/704 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,184 DEBUG Processing 41/675 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,326 DEBUG Processing 625/719 atomic regions from SNP 187394 to 187994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:23,455 DEBUG Processing 26/704 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,457 DEBUG Processing 42/675 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,630 DEBUG Processing 626/719 atomic regions from SNP 187694 to 188294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:23,724 DEBUG Processing 27/704 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,734 DEBUG Processing 43/675 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,949 DEBUG Processing 627/719 atomic regions from SNP 187994 to 188594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:24,003 DEBUG Processing 28/704 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,008 DEBUG Processing 44/675 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,272 DEBUG Processing 628/719 atomic regions from SNP 188294 to 188894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:24,275 DEBUG Processing 29/704 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,286 DEBUG Processing 45/675 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,552 DEBUG Processing 30/704 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,557 DEBUG Processing 46/675 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,571 DEBUG Processing 629/719 atomic regions from SNP 188594 to 189194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:24,839 DEBUG Processing 31/704 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,846 DEBUG Processing 47/675 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,863 DEBUG Processing 630/719 atomic regions from SNP 188894 to 189494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,124 DEBUG Processing 32/704 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,131 DEBUG Processing 48/675 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,149 DEBUG Processing 631/719 atomic regions from SNP 189194 to 189794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,407 DEBUG Processing 49/675 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,407 DEBUG Processing 33/704 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,427 DEBUG Processing 632/719 atomic regions from SNP 189494 to 190094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,428 DEBUG chr12 total SNP count: 197661 2025-01-31 09:56:25,428 DEBUG chr12 length: 120129022 2025-01-31 09:56:25,428 DEBUG ----------------------------------------- 2025-01-31 09:56:25,429 INFO Processing SNPs in chr12 2025-01-31 09:56:25,625 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 197661)] 2025-01-31 09:56:25,699 DEBUG Processing 34/704 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,701 DEBUG Processing 50/675 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,736 DEBUG Processing 633/719 atomic regions from SNP 189794 to 190394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,753 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:25,990 DEBUG Processing 51/675 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,993 DEBUG Processing 35/704 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,049 DEBUG Processing 634/719 atomic regions from SNP 190094 to 190694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:26,282 DEBUG Processing 52/675 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,284 DEBUG Processing 36/704 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,360 DEBUG Processing 635/719 atomic regions from SNP 190394 to 190994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:26,575 DEBUG Processing 37/704 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,577 DEBUG Processing 53/675 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,673 DEBUG Processing 636/719 atomic regions from SNP 190694 to 191294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:26,865 DEBUG Processing 38/704 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,884 DEBUG Processing 54/675 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,987 DEBUG Processing 637/719 atomic regions from SNP 190994 to 191594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:27,155 DEBUG Processing 39/704 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,189 DEBUG Processing 55/675 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,309 DEBUG Processing 638/719 atomic regions from SNP 191294 to 191894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:27,444 DEBUG Processing 40/704 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,470 DEBUG Processing 56/675 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,612 DEBUG Processing 639/719 atomic regions from SNP 191594 to 192194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:27,731 DEBUG Processing 41/704 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,752 DEBUG Processing 57/675 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,899 DEBUG Processing 640/719 atomic regions from SNP 191894 to 192494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,019 DEBUG Processing 42/704 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,034 DEBUG Processing 58/675 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,190 DEBUG Processing 641/719 atomic regions from SNP 192194 to 192794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,310 DEBUG Processing 43/704 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,325 DEBUG Processing 59/675 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,474 DEBUG Processing 642/719 atomic regions from SNP 192494 to 193094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,604 DEBUG Processing 44/704 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,617 DEBUG Processing 60/675 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,758 DEBUG Processing 643/719 atomic regions from SNP 192794 to 193394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,898 DEBUG Processing 45/704 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,928 DEBUG Processing 61/675 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,046 DEBUG Processing 644/719 atomic regions from SNP 193094 to 193694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:29,189 DEBUG Processing 46/704 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,236 DEBUG Processing 62/675 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,334 DEBUG Processing 645/719 atomic regions from SNP 193394 to 193994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:29,478 DEBUG Processing 47/704 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,523 DEBUG Processing 63/675 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,625 DEBUG Processing 646/719 atomic regions from SNP 193694 to 194294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:29,767 DEBUG Processing 48/704 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,811 DEBUG Processing 64/675 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,914 DEBUG Processing 647/719 atomic regions from SNP 193994 to 194594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,056 DEBUG Processing 49/704 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,098 DEBUG Processing 65/675 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,203 DEBUG Processing 648/719 atomic regions from SNP 194294 to 194894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,345 DEBUG Processing 50/704 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,384 DEBUG Processing 66/675 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,492 DEBUG Processing 649/719 atomic regions from SNP 194594 to 195194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,636 DEBUG Processing 51/704 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,670 DEBUG Processing 67/675 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,781 DEBUG Processing 650/719 atomic regions from SNP 194894 to 195494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,925 DEBUG Processing 52/704 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,958 DEBUG Processing 68/675 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,070 DEBUG Processing 651/719 atomic regions from SNP 195194 to 195794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:31,216 DEBUG Processing 53/704 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,245 DEBUG Processing 69/675 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,360 DEBUG Processing 652/719 atomic regions from SNP 195494 to 196094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:31,513 DEBUG Processing 54/704 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,538 DEBUG Processing 70/675 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,681 DEBUG Processing 653/719 atomic regions from SNP 195794 to 196394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:31,834 DEBUG Processing 55/704 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,837 DEBUG Processing 71/675 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,968 DEBUG Processing 654/719 atomic regions from SNP 196094 to 196694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,131 DEBUG Processing 72/675 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,135 DEBUG Processing 56/704 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,256 DEBUG Processing 655/719 atomic regions from SNP 196394 to 196994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,414 DEBUG Processing 73/675 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,424 DEBUG Processing 57/704 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,540 DEBUG Processing 656/719 atomic regions from SNP 196694 to 197294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,697 DEBUG Processing 74/675 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,712 DEBUG Processing 58/704 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,827 DEBUG Processing 657/719 atomic regions from SNP 196994 to 197594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,981 DEBUG Processing 75/675 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,004 DEBUG Processing 59/704 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,150 DEBUG Processing 658/719 atomic regions from SNP 197294 to 197894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,277 DEBUG Processing 76/675 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,304 DEBUG Processing 60/704 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,441 DEBUG Processing 659/719 atomic regions from SNP 197594 to 198194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,557 DEBUG Processing 77/675 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,595 DEBUG Processing 61/704 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,763 DEBUG Processing 660/719 atomic regions from SNP 197894 to 198494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,848 DEBUG Processing 78/675 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,894 DEBUG Processing 62/704 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,099 DEBUG Processing 661/719 atomic regions from SNP 198194 to 198794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:34,179 DEBUG Processing 79/675 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,235 DEBUG Processing 63/704 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,406 DEBUG Processing 662/719 atomic regions from SNP 198494 to 199094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:34,458 DEBUG Processing 80/675 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,504 DEBUG Processing 64/704 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,674 DEBUG Processing 663/719 atomic regions from SNP 198794 to 199394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:34,722 DEBUG Processing 81/675 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,781 DEBUG Processing 65/704 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,954 DEBUG Processing 664/719 atomic regions from SNP 199094 to 199694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:34,997 DEBUG Processing 82/675 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,065 DEBUG Processing 66/704 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,238 DEBUG Processing 665/719 atomic regions from SNP 199394 to 199994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:35,293 DEBUG Processing 83/675 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,350 DEBUG Processing 67/704 atomic regions from SNP 19866 to 20467 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,520 DEBUG Processing 666/719 atomic regions from SNP 199694 to 200294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:35,581 DEBUG Processing 84/675 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,635 DEBUG Processing 68/704 atomic regions from SNP 20167 to 20768 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,802 DEBUG Processing 667/719 atomic regions from SNP 199994 to 200594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:35,863 DEBUG Processing 85/675 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,926 DEBUG Processing 69/704 atomic regions from SNP 20468 to 21069 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,089 DEBUG Processing 668/719 atomic regions from SNP 200294 to 200894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,142 DEBUG Processing 86/675 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,210 DEBUG Processing 70/704 atomic regions from SNP 20769 to 21370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,365 DEBUG Processing 669/719 atomic regions from SNP 200594 to 201194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,409 DEBUG Processing 87/675 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,482 DEBUG Processing 71/704 atomic regions from SNP 21070 to 21671 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,637 DEBUG Processing 670/719 atomic regions from SNP 200894 to 201494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,640 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:56:36,675 DEBUG Processing 88/675 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,763 DEBUG Processing 72/704 atomic regions from SNP 21371 to 21972 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,921 DEBUG Processing 671/719 atomic regions from SNP 201194 to 201794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,952 DEBUG Processing 89/675 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,039 DEBUG Processing 73/704 atomic regions from SNP 21672 to 22273 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,196 DEBUG Processing 672/719 atomic regions from SNP 201494 to 202094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:37,219 DEBUG Processing 90/675 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,310 DEBUG Processing 74/704 atomic regions from SNP 21973 to 22574 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,466 DEBUG Processing 673/719 atomic regions from SNP 201794 to 202394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:37,483 DEBUG Processing 91/675 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,579 DEBUG Processing 75/704 atomic regions from SNP 22274 to 22875 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,737 DEBUG Processing 674/719 atomic regions from SNP 202094 to 202694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:37,746 DEBUG Processing 92/675 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,847 DEBUG Processing 76/704 atomic regions from SNP 22575 to 23176 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,006 DEBUG Processing 675/719 atomic regions from SNP 202394 to 202994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,009 DEBUG Processing 93/675 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,115 DEBUG Processing 77/704 atomic regions from SNP 22876 to 23477 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,272 DEBUG Processing 94/675 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,274 DEBUG Processing 676/719 atomic regions from SNP 202694 to 203294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,384 DEBUG Processing 78/704 atomic regions from SNP 23177 to 23778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,540 DEBUG Processing 95/675 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,545 DEBUG Processing 677/719 atomic regions from SNP 202994 to 203594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,662 DEBUG Processing 79/704 atomic regions from SNP 23478 to 24079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,808 DEBUG Processing 96/675 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,817 DEBUG Processing 678/719 atomic regions from SNP 203294 to 203894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,926 DEBUG Processing 80/704 atomic regions from SNP 23779 to 24380 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,076 DEBUG Processing 97/675 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,088 DEBUG Processing 679/719 atomic regions from SNP 203594 to 204194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,187 DEBUG Processing 81/704 atomic regions from SNP 24080 to 24681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,342 DEBUG Processing 98/675 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,359 DEBUG Processing 680/719 atomic regions from SNP 203894 to 204494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,448 DEBUG Processing 82/704 atomic regions from SNP 24381 to 24982 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,609 DEBUG Processing 99/675 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,629 DEBUG Processing 681/719 atomic regions from SNP 204194 to 204794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,711 DEBUG Processing 83/704 atomic regions from SNP 24682 to 25283 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,874 DEBUG Processing 100/675 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,900 DEBUG Processing 682/719 atomic regions from SNP 204494 to 205094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,972 DEBUG Processing 84/704 atomic regions from SNP 24983 to 25584 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,139 DEBUG Processing 101/675 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,169 DEBUG Processing 683/719 atomic regions from SNP 204794 to 205394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,233 DEBUG Processing 85/704 atomic regions from SNP 25284 to 25885 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,408 DEBUG Processing 102/675 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,439 DEBUG Processing 684/719 atomic regions from SNP 205094 to 205694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,501 DEBUG Processing 86/704 atomic regions from SNP 25585 to 26186 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,707 DEBUG Processing 103/675 atomic regions from SNP 30702 to 31303 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,710 DEBUG Processing 685/719 atomic regions from SNP 205394 to 205994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,775 DEBUG Processing 87/704 atomic regions from SNP 25886 to 26487 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,980 DEBUG Processing 686/719 atomic regions from SNP 205694 to 206294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:41,005 DEBUG Processing 104/675 atomic regions from SNP 31003 to 31604 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,038 DEBUG Processing 88/704 atomic regions from SNP 26187 to 26788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,248 DEBUG Processing 687/719 atomic regions from SNP 205994 to 206594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:41,287 DEBUG Processing 105/675 atomic regions from SNP 31304 to 31905 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,301 DEBUG Processing 89/704 atomic regions from SNP 26488 to 27089 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,518 DEBUG Processing 688/719 atomic regions from SNP 206294 to 206894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:41,567 DEBUG Processing 90/704 atomic regions from SNP 26789 to 27390 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,586 DEBUG Processing 106/675 atomic regions from SNP 31605 to 32206 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,788 DEBUG Processing 689/719 atomic regions from SNP 206594 to 207194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:41,835 DEBUG Processing 91/704 atomic regions from SNP 27090 to 27691 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,883 DEBUG Processing 107/675 atomic regions from SNP 31906 to 32507 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,080 DEBUG Processing 690/719 atomic regions from SNP 206894 to 207494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,104 DEBUG Processing 92/704 atomic regions from SNP 27391 to 27992 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,173 DEBUG Processing 108/675 atomic regions from SNP 32207 to 32808 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,378 DEBUG Processing 93/704 atomic regions from SNP 27692 to 28293 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,380 DEBUG Processing 691/719 atomic regions from SNP 207194 to 207794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,431 DEBUG Processing 109/675 atomic regions from SNP 32508 to 33109 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,652 DEBUG Processing 94/704 atomic regions from SNP 27993 to 28594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,659 DEBUG Processing 692/719 atomic regions from SNP 207494 to 208094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,689 DEBUG Processing 110/675 atomic regions from SNP 32809 to 33410 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,926 DEBUG Processing 95/704 atomic regions from SNP 28294 to 28895 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,931 DEBUG Processing 693/719 atomic regions from SNP 207794 to 208394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,949 DEBUG Processing 111/675 atomic regions from SNP 33110 to 33711 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,203 DEBUG Processing 694/719 atomic regions from SNP 208094 to 208694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:43,208 DEBUG Processing 96/704 atomic regions from SNP 28595 to 29196 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,213 DEBUG Processing 112/675 atomic regions from SNP 33411 to 34012 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,479 DEBUG Processing 113/675 atomic regions from SNP 33712 to 34313 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,491 DEBUG Processing 97/704 atomic regions from SNP 28896 to 29497 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,499 DEBUG Processing 695/719 atomic regions from SNP 208394 to 208994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:43,777 DEBUG Processing 114/675 atomic regions from SNP 34013 to 34614 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,780 DEBUG Processing 98/704 atomic regions from SNP 29197 to 29798 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,788 DEBUG Processing 696/719 atomic regions from SNP 208694 to 209294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:44,071 DEBUG Processing 115/675 atomic regions from SNP 34314 to 34915 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,072 DEBUG Processing 697/719 atomic regions from SNP 208994 to 209594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:44,081 DEBUG Processing 99/704 atomic regions from SNP 29498 to 30099 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,359 DEBUG Processing 100/704 atomic regions from SNP 29799 to 30400 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,370 DEBUG Processing 116/675 atomic regions from SNP 34615 to 35216 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,374 DEBUG Processing 698/719 atomic regions from SNP 209294 to 209894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:44,639 DEBUG Processing 101/704 atomic regions from SNP 30100 to 30701 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,659 DEBUG Processing 699/719 atomic regions from SNP 209594 to 210194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:44,662 DEBUG Processing 117/675 atomic regions from SNP 34916 to 35517 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,910 DEBUG Processing 102/704 atomic regions from SNP 30401 to 31002 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,927 DEBUG Processing 118/675 atomic regions from SNP 35217 to 35818 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,930 DEBUG Processing 700/719 atomic regions from SNP 209894 to 210494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:45,185 DEBUG Processing 103/704 atomic regions from SNP 30702 to 31303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,201 DEBUG Processing 701/719 atomic regions from SNP 210194 to 210794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:45,206 DEBUG Processing 119/675 atomic regions from SNP 35518 to 36119 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,460 DEBUG Processing 104/704 atomic regions from SNP 31003 to 31604 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,489 DEBUG Processing 702/719 atomic regions from SNP 210494 to 211094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:45,494 DEBUG Processing 120/675 atomic regions from SNP 35819 to 36420 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,730 DEBUG Processing 105/704 atomic regions from SNP 31304 to 31905 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,775 DEBUG Processing 121/675 atomic regions from SNP 36120 to 36721 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,791 DEBUG Processing 703/719 atomic regions from SNP 210794 to 211394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:46,003 DEBUG Processing 106/704 atomic regions from SNP 31605 to 32206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,066 DEBUG Processing 122/675 atomic regions from SNP 36421 to 37022 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,075 DEBUG Processing 704/719 atomic regions from SNP 211094 to 211694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:46,280 DEBUG Processing 107/704 atomic regions from SNP 31906 to 32507 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,361 DEBUG Processing 123/675 atomic regions from SNP 36722 to 37323 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,374 DEBUG Processing 705/719 atomic regions from SNP 211394 to 211994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:46,557 DEBUG Processing 108/704 atomic regions from SNP 32207 to 32808 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,645 DEBUG Processing 124/675 atomic regions from SNP 37023 to 37624 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,666 DEBUG Processing 706/719 atomic regions from SNP 211694 to 212294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:46,832 DEBUG Processing 109/704 atomic regions from SNP 32508 to 33109 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,913 DEBUG Processing 125/675 atomic regions from SNP 37324 to 37925 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,937 DEBUG Processing 707/719 atomic regions from SNP 211994 to 212594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:47,109 DEBUG Processing 110/704 atomic regions from SNP 32809 to 33410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,180 DEBUG Processing 126/675 atomic regions from SNP 37625 to 38226 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,204 DEBUG Processing 708/719 atomic regions from SNP 212294 to 212894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:47,385 DEBUG Processing 111/704 atomic regions from SNP 33110 to 33711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,445 DEBUG Processing 127/675 atomic regions from SNP 37926 to 38527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,479 DEBUG Processing 709/719 atomic regions from SNP 212594 to 213194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:47,678 DEBUG Processing 112/704 atomic regions from SNP 33411 to 34012 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,710 DEBUG Processing 128/675 atomic regions from SNP 38227 to 38828 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,744 DEBUG Processing 710/719 atomic regions from SNP 212894 to 213494 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:47,980 DEBUG Processing 129/675 atomic regions from SNP 38528 to 39129 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,983 DEBUG Processing 113/704 atomic regions from SNP 33712 to 34313 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,010 DEBUG Processing 711/719 atomic regions from SNP 213194 to 213794 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:48,252 DEBUG Processing 130/675 atomic regions from SNP 38829 to 39430 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,265 DEBUG Processing 114/704 atomic regions from SNP 34013 to 34614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,277 DEBUG Processing 712/719 atomic regions from SNP 213494 to 214094 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:48,522 DEBUG Processing 131/675 atomic regions from SNP 39130 to 39731 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,539 DEBUG Processing 115/704 atomic regions from SNP 34314 to 34915 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,546 DEBUG Processing 713/719 atomic regions from SNP 213794 to 214394 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:48,790 DEBUG Processing 132/675 atomic regions from SNP 39431 to 40032 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,813 DEBUG Processing 116/704 atomic regions from SNP 34615 to 35216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,827 DEBUG Processing 714/719 atomic regions from SNP 214094 to 214694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:49,058 DEBUG Processing 133/675 atomic regions from SNP 39732 to 40333 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,087 DEBUG Processing 117/704 atomic regions from SNP 34916 to 35517 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,104 DEBUG Processing 715/719 atomic regions from SNP 214394 to 214994 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:49,248 DEBUG Segmenting atomic regions: 2025-01-31 09:56:49,325 DEBUG Processing 134/675 atomic regions from SNP 40033 to 40634 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,331 DEBUG Processing 1/657 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,360 DEBUG Processing 118/704 atomic regions from SNP 35217 to 35818 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,392 DEBUG Processing 716/719 atomic regions from SNP 214694 to 215294 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:49,597 DEBUG Processing 135/675 atomic regions from SNP 40334 to 40935 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,609 DEBUG Processing 2/657 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,634 DEBUG Processing 119/704 atomic regions from SNP 35518 to 36119 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,662 DEBUG Processing 717/719 atomic regions from SNP 214994 to 215594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:49,869 DEBUG Processing 136/675 atomic regions from SNP 40635 to 41236 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,893 DEBUG Processing 3/657 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,907 DEBUG Processing 120/704 atomic regions from SNP 35819 to 36420 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,931 DEBUG Processing 718/719 atomic regions from SNP 215294 to 215894 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:50,139 DEBUG Processing 137/675 atomic regions from SNP 40936 to 41537 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,181 DEBUG Processing 121/704 atomic regions from SNP 36120 to 36721 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,182 DEBUG Processing 4/657 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,199 DEBUG Processing 719/719 atomic regions from SNP 215594 to 216194 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:50,399 DEBUG Unique SNPs positions in subchromosome 1: 216195 2025-01-31 09:56:50,412 DEBUG Processing 138/675 atomic regions from SNP 41237 to 41838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,454 DEBUG Processing 122/704 atomic regions from SNP 36421 to 37022 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,459 DEBUG Processing 5/657 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,725 DEBUG Processing 139/675 atomic regions from SNP 41538 to 42139 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,780 DEBUG Processing 123/704 atomic regions from SNP 36722 to 37323 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,791 DEBUG Processing 6/657 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,007 DEBUG Processing 140/675 atomic regions from SNP 41839 to 42440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,070 DEBUG Processing 124/704 atomic regions from SNP 37023 to 37624 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,078 DEBUG Processing 7/657 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,286 DEBUG Processing 141/675 atomic regions from SNP 42140 to 42741 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,358 DEBUG Processing 125/704 atomic regions from SNP 37324 to 37925 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,365 DEBUG Processing 8/657 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,576 DEBUG Processing 142/675 atomic regions from SNP 42441 to 43042 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,667 DEBUG Processing 126/704 atomic regions from SNP 37625 to 38226 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,669 DEBUG Processing 9/657 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,886 DEBUG Processing 143/675 atomic regions from SNP 42742 to 43343 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,976 DEBUG Processing 10/657 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,978 DEBUG Processing 127/704 atomic regions from SNP 37926 to 38527 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,163 DEBUG Processing 144/675 atomic regions from SNP 43043 to 43644 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,268 DEBUG Processing 128/704 atomic regions from SNP 38227 to 38828 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,283 DEBUG Processing 11/657 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,442 DEBUG Processing 145/675 atomic regions from SNP 43344 to 43945 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,544 DEBUG Processing 129/704 atomic regions from SNP 38528 to 39129 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,584 DEBUG Processing 12/657 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,712 DEBUG Processing 146/675 atomic regions from SNP 43645 to 44246 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,816 DEBUG Processing 130/704 atomic regions from SNP 38829 to 39430 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,851 DEBUG Processing 13/657 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,978 DEBUG Processing 147/675 atomic regions from SNP 43946 to 44547 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,090 DEBUG Processing 131/704 atomic regions from SNP 39130 to 39731 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,119 DEBUG Processing 14/657 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,249 DEBUG Processing 148/675 atomic regions from SNP 44247 to 44848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,386 DEBUG Processing 132/704 atomic regions from SNP 39431 to 40032 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,408 DEBUG Processing 15/657 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,532 DEBUG Processing 149/675 atomic regions from SNP 44548 to 45149 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,678 DEBUG Processing 133/704 atomic regions from SNP 39732 to 40333 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,692 DEBUG Processing 16/657 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,810 DEBUG Processing 150/675 atomic regions from SNP 44849 to 45450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,955 DEBUG Processing 134/704 atomic regions from SNP 40033 to 40634 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,963 DEBUG Processing 17/657 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,076 DEBUG Processing 151/675 atomic regions from SNP 45150 to 45751 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,232 DEBUG Processing 18/657 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,232 DEBUG Processing 135/704 atomic regions from SNP 40334 to 40935 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,350 DEBUG Processing 152/675 atomic regions from SNP 45451 to 46052 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,512 DEBUG Processing 19/657 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,518 DEBUG Processing 136/704 atomic regions from SNP 40635 to 41236 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,651 DEBUG Processing 153/675 atomic regions from SNP 45752 to 46353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,779 DEBUG Processing 20/657 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,790 DEBUG Processing 137/704 atomic regions from SNP 40936 to 41537 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,932 DEBUG Processing 154/675 atomic regions from SNP 46053 to 46654 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,004 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:56:55,052 DEBUG Processing 21/657 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,069 DEBUG Processing 138/704 atomic regions from SNP 41237 to 41838 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,232 DEBUG Processing 155/675 atomic regions from SNP 46354 to 46955 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,332 DEBUG Processing 22/657 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,350 DEBUG Processing 139/704 atomic regions from SNP 41538 to 42139 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,519 DEBUG Processing 156/675 atomic regions from SNP 46655 to 47256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,599 DEBUG Processing 23/657 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,621 DEBUG Processing 140/704 atomic regions from SNP 41839 to 42440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,790 DEBUG Processing 157/675 atomic regions from SNP 46956 to 47557 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,883 DEBUG Processing 24/657 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,914 DEBUG Processing 141/704 atomic regions from SNP 42140 to 42741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,072 DEBUG Processing 158/675 atomic regions from SNP 47257 to 47858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,160 DEBUG Processing 25/657 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,197 DEBUG Processing 142/704 atomic regions from SNP 42441 to 43042 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,361 DEBUG Processing 159/675 atomic regions from SNP 47558 to 48159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,431 DEBUG Processing 26/657 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,472 DEBUG Processing 143/704 atomic regions from SNP 42742 to 43343 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,655 DEBUG Processing 160/675 atomic regions from SNP 47859 to 48460 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,694 DEBUG Processing 27/657 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,740 DEBUG Processing 144/704 atomic regions from SNP 43043 to 43644 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,906 DEBUG Subchromosome time: 238.0522521820385, subchromosome SNPs: 216195 2025-01-31 09:56:56,906 DEBUG Estimated BADs: [0.71, 6.42, 0.71, 2.14, 1.07, 14.99, 2.14, 1.07, 2.14, 0.71, 2.14, 0.54, 14.99, 1.07, 4.28, 19.27, 4.28, 2.14, 8.56, 4.28, 6.42, 2.14, 4.28, 2.14, 1.07, 0.36, 2.14, 8.56, 2.14, 4.28] SNP counts: [7645, 273, 9030, 3013, 9265, 3168, 5917, 9967, 3276, 3744, 5036, 4595, 121, 4313, 1859, 768, 2724, 20109, 3273, 9597, 6063, 7146, 3646, 11029, 19514, 5691, 22346, 7997, 15882, 9188] SNP IDs counts: [7645, 273, 9030, 3013, 9265, 3168, 5917, 9967, 3276, 3744, 5036, 4595, 121, 4313, 1859, 768, 2724, 20109, 3273, 9597, 6063, 7146, 3646, 11029, 19514, 5691, 22346, 7997, 15882, 9188] Critical gap: 600161bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 7.71Mbp, 7.86Mbp, 13.29Mbp, 15.02Mbp, 20.63Mbp, 22.31Mbp, 25.63Mbp, 31.12Mbp, 32.88Mbp, 35.00Mbp, 37.96Mbp, 40.76Mbp, 40.82Mbp, 43.10Mbp, 44.07Mbp, 44.49Mbp, 45.91Mbp, 56.86Mbp, 58.58Mbp, 63.64Mbp, 66.83Mbp, 70.66Mbp, 72.63Mbp, 78.80Mbp, 90.58Mbp, 94.04Mbp, 106.15Mbp, 110.62Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:56:56,906 DEBUG chr9 time: 238.05271057703067 s 2025-01-31 09:56:56,937 DEBUG Processing 161/675 atomic regions from SNP 48160 to 48761 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,974 DEBUG Processing 28/657 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,022 DEBUG Processing 145/704 atomic regions from SNP 43344 to 43945 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,099 DEBUG chr9: Fitting background model for 30 segments 2025-01-31 09:56:57,217 DEBUG Processing 162/675 atomic regions from SNP 48461 to 49062 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,260 DEBUG Processing 29/657 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,306 DEBUG Processing 146/704 atomic regions from SNP 43645 to 44246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,491 DEBUG Processing 163/675 atomic regions from SNP 48762 to 49363 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,530 DEBUG Processing 30/657 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,578 DEBUG Processing 147/704 atomic regions from SNP 43946 to 44547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,776 DEBUG Processing 164/675 atomic regions from SNP 49063 to 49664 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,813 DEBUG Processing 31/657 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,867 DEBUG Processing 148/704 atomic regions from SNP 44247 to 44848 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,058 DEBUG Processing 165/675 atomic regions from SNP 49364 to 49965 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,102 DEBUG Processing 32/657 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,162 DEBUG Processing 149/704 atomic regions from SNP 44548 to 45149 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,347 DEBUG Processing 166/675 atomic regions from SNP 49665 to 50266 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,387 DEBUG Processing 33/657 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,445 DEBUG Processing 150/704 atomic regions from SNP 44849 to 45450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,629 DEBUG Processing 167/675 atomic regions from SNP 49966 to 50567 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,674 DEBUG Processing 34/657 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,726 DEBUG Processing 151/704 atomic regions from SNP 45150 to 45751 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,910 DEBUG Processing 168/675 atomic regions from SNP 50267 to 50868 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,953 DEBUG Processing 35/657 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,005 DEBUG Processing 152/704 atomic regions from SNP 45451 to 46052 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,191 DEBUG Processing 169/675 atomic regions from SNP 50568 to 51169 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,231 DEBUG Processing 36/657 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,285 DEBUG Processing 153/704 atomic regions from SNP 45752 to 46353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,477 DEBUG Processing 170/675 atomic regions from SNP 50869 to 51470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,511 DEBUG Processing 37/657 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,585 DEBUG Processing 154/704 atomic regions from SNP 46053 to 46654 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,768 DEBUG Processing 171/675 atomic regions from SNP 51170 to 51771 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,790 DEBUG Processing 38/657 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,867 DEBUG Processing 155/704 atomic regions from SNP 46354 to 46955 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,053 DEBUG Processing 172/675 atomic regions from SNP 51471 to 52072 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,070 DEBUG Processing 39/657 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,156 DEBUG Processing 156/704 atomic regions from SNP 46655 to 47256 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,340 DEBUG Processing 173/675 atomic regions from SNP 51772 to 52373 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,354 DEBUG Processing 40/657 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,442 DEBUG Processing 157/704 atomic regions from SNP 46956 to 47557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,631 DEBUG Processing 174/675 atomic regions from SNP 52073 to 52674 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,635 DEBUG Processing 41/657 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,728 DEBUG Processing 158/704 atomic regions from SNP 47257 to 47858 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,917 DEBUG Processing 42/657 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,918 DEBUG Processing 175/675 atomic regions from SNP 52374 to 52975 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,009 DEBUG Processing 159/704 atomic regions from SNP 47558 to 48159 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,198 DEBUG Processing 43/657 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,223 DEBUG Processing 176/675 atomic regions from SNP 52675 to 53276 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,291 DEBUG Processing 160/704 atomic regions from SNP 47859 to 48460 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,476 DEBUG Processing 44/657 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,537 DEBUG Processing 177/675 atomic regions from SNP 52976 to 53577 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,575 DEBUG Processing 161/704 atomic regions from SNP 48160 to 48761 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,750 DEBUG Processing 45/657 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,851 DEBUG Processing 178/675 atomic regions from SNP 53277 to 53878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,876 DEBUG Processing 162/704 atomic regions from SNP 48461 to 49062 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,025 DEBUG Processing 46/657 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,152 DEBUG Processing 179/675 atomic regions from SNP 53578 to 54179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,188 DEBUG Processing 163/704 atomic regions from SNP 48762 to 49363 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,312 DEBUG Processing 47/657 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,440 DEBUG Processing 180/675 atomic regions from SNP 53879 to 54480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,478 DEBUG Processing 164/704 atomic regions from SNP 49063 to 49664 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,593 DEBUG Processing 48/657 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,714 DEBUG Processing 181/675 atomic regions from SNP 54180 to 54781 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,776 DEBUG Processing 165/704 atomic regions from SNP 49364 to 49965 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,867 DEBUG Processing 49/657 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,995 DEBUG Processing 182/675 atomic regions from SNP 54481 to 55082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,080 DEBUG Processing 166/704 atomic regions from SNP 49665 to 50266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,134 DEBUG Processing 50/657 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,264 DEBUG Processing 183/675 atomic regions from SNP 54782 to 55382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,351 DEBUG Processing 167/704 atomic regions from SNP 49966 to 50567 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,406 DEBUG Processing 51/657 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,531 DEBUG Processing 184/675 atomic regions from SNP 55082 to 55682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,622 DEBUG Processing 168/704 atomic regions from SNP 50267 to 50868 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,672 DEBUG Processing 52/657 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,798 DEBUG Processing 185/675 atomic regions from SNP 55382 to 55982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,892 DEBUG Processing 169/704 atomic regions from SNP 50568 to 51169 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,933 DEBUG Processing 53/657 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,078 DEBUG Processing 186/675 atomic regions from SNP 55682 to 56282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,179 DEBUG Processing 170/704 atomic regions from SNP 50869 to 51470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,208 DEBUG Processing 54/657 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,374 DEBUG Processing 187/675 atomic regions from SNP 55982 to 56582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,453 DEBUG Processing 171/704 atomic regions from SNP 51170 to 51771 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,472 DEBUG Processing 55/657 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,639 DEBUG Processing 188/675 atomic regions from SNP 56282 to 56882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,721 DEBUG Processing 172/704 atomic regions from SNP 51471 to 52072 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,730 DEBUG Processing 56/657 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,934 DEBUG Processing 189/675 atomic regions from SNP 56582 to 57182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,997 DEBUG Processing 57/657 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,997 DEBUG Processing 173/704 atomic regions from SNP 51772 to 52373 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,204 DEBUG Processing 190/675 atomic regions from SNP 56882 to 57482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,261 DEBUG Processing 58/657 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,268 DEBUG Processing 174/704 atomic regions from SNP 52073 to 52674 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,446 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:57:05,478 DEBUG Processing 191/675 atomic regions from SNP 57182 to 57782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,478 DEBUG chr15: Signal quantile: 0.987. signal threshold: 17. Best RMSEA: 0.014 2025-01-31 09:57:05,545 DEBUG Processing 59/657 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,558 DEBUG Processing 175/704 atomic regions from SNP 52374 to 52975 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,766 DEBUG Processing 192/675 atomic regions from SNP 57482 to 58082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,827 DEBUG Processing 60/657 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,845 DEBUG Processing 176/704 atomic regions from SNP 52675 to 53276 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,045 DEBUG Processing 193/675 atomic regions from SNP 57782 to 58382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,114 DEBUG Processing 61/657 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,135 DEBUG Processing 177/704 atomic regions from SNP 52976 to 53577 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,316 DEBUG Processing 194/675 atomic regions from SNP 58082 to 58682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,387 DEBUG Processing 62/657 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,414 DEBUG Processing 178/704 atomic regions from SNP 53277 to 53878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,591 DEBUG Processing 195/675 atomic regions from SNP 58382 to 58982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,673 DEBUG Processing 63/657 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,703 DEBUG Processing 179/704 atomic regions from SNP 53578 to 54179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,875 DEBUG Processing 196/675 atomic regions from SNP 58682 to 59282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,965 DEBUG Processing 64/657 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,000 DEBUG Processing 180/704 atomic regions from SNP 53879 to 54480 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,155 DEBUG Processing 197/675 atomic regions from SNP 58982 to 59582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,235 DEBUG Processing 65/657 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,274 DEBUG Processing 181/704 atomic regions from SNP 54180 to 54781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,428 DEBUG Processing 198/675 atomic regions from SNP 59282 to 59882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,516 DEBUG Processing 66/657 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,563 DEBUG Processing 182/704 atomic regions from SNP 54481 to 55082 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,737 DEBUG Processing 199/675 atomic regions from SNP 59582 to 60182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,803 DEBUG Processing 67/657 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,853 DEBUG Processing 183/704 atomic regions from SNP 54782 to 55383 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,057 DEBUG Processing 200/675 atomic regions from SNP 59882 to 60482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,087 DEBUG Processing 68/657 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,136 DEBUG Processing 184/704 atomic regions from SNP 55083 to 55684 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,356 DEBUG Processing 201/675 atomic regions from SNP 60182 to 60782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,362 DEBUG Processing 69/657 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,419 DEBUG Processing 185/704 atomic regions from SNP 55384 to 55985 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,645 DEBUG Processing 202/675 atomic regions from SNP 60482 to 61082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,650 DEBUG Processing 70/657 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,709 DEBUG Processing 186/704 atomic regions from SNP 55685 to 56286 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,910 DEBUG chr15 total SNP count: 179185 2025-01-31 09:57:08,910 DEBUG chr15 length: 104043685 2025-01-31 09:57:08,910 DEBUG ----------------------------------------- 2025-01-31 09:57:08,910 INFO Processing SNPs in chr15 2025-01-31 09:57:08,927 DEBUG Processing 203/675 atomic regions from SNP 60782 to 61382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,933 DEBUG Processing 71/657 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,000 DEBUG Processing 187/704 atomic regions from SNP 55986 to 56587 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,085 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 179185)] 2025-01-31 09:57:09,200 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:57:09,218 DEBUG Processing 72/657 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,231 DEBUG Processing 204/675 atomic regions from SNP 61082 to 61682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,289 DEBUG Processing 188/704 atomic regions from SNP 56287 to 56888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,498 DEBUG Processing 73/657 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,539 DEBUG Processing 205/675 atomic regions from SNP 61382 to 61982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,572 DEBUG Processing 189/704 atomic regions from SNP 56588 to 57189 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,777 DEBUG Processing 74/657 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,821 DEBUG Processing 206/675 atomic regions from SNP 61682 to 62282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,858 DEBUG Processing 190/704 atomic regions from SNP 56889 to 57490 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,055 DEBUG Processing 75/657 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,104 DEBUG Processing 207/675 atomic regions from SNP 61982 to 62582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,143 DEBUG Processing 191/704 atomic regions from SNP 57190 to 57791 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,334 DEBUG Processing 76/657 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,386 DEBUG Processing 208/675 atomic regions from SNP 62282 to 62882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,427 DEBUG Processing 192/704 atomic regions from SNP 57491 to 58092 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,611 DEBUG Processing 77/657 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,671 DEBUG Processing 209/675 atomic regions from SNP 62582 to 63182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,711 DEBUG Processing 193/704 atomic regions from SNP 57792 to 58393 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,890 DEBUG Processing 78/657 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,956 DEBUG Processing 210/675 atomic regions from SNP 62882 to 63482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,002 DEBUG Processing 194/704 atomic regions from SNP 58093 to 58694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,167 DEBUG Processing 79/657 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,242 DEBUG Processing 211/675 atomic regions from SNP 63182 to 63782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,289 DEBUG Processing 195/704 atomic regions from SNP 58394 to 58995 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,445 DEBUG Processing 80/657 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,526 DEBUG Processing 212/675 atomic regions from SNP 63482 to 64082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,577 DEBUG Processing 196/704 atomic regions from SNP 58695 to 59296 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,734 DEBUG Processing 81/657 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,809 DEBUG Processing 213/675 atomic regions from SNP 63782 to 64382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,862 DEBUG Processing 197/704 atomic regions from SNP 58996 to 59597 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,039 DEBUG Processing 82/657 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,085 DEBUG Processing 214/675 atomic regions from SNP 64082 to 64682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,140 DEBUG Processing 198/704 atomic regions from SNP 59297 to 59898 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,333 DEBUG Processing 83/657 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,358 DEBUG Processing 215/675 atomic regions from SNP 64382 to 64982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,413 DEBUG Processing 199/704 atomic regions from SNP 59598 to 60199 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,602 DEBUG Processing 84/657 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,625 DEBUG Processing 216/675 atomic regions from SNP 64682 to 65282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,684 DEBUG Processing 200/704 atomic regions from SNP 59899 to 60500 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,882 DEBUG Processing 85/657 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,891 DEBUG Processing 217/675 atomic regions from SNP 64982 to 65582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,953 DEBUG Processing 201/704 atomic regions from SNP 60200 to 60801 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,159 DEBUG Processing 218/675 atomic regions from SNP 65282 to 65882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,170 DEBUG Processing 86/657 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,223 DEBUG Processing 202/704 atomic regions from SNP 60501 to 61102 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,450 DEBUG Processing 87/657 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,452 DEBUG Processing 219/675 atomic regions from SNP 65582 to 66182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,490 DEBUG Processing 203/704 atomic regions from SNP 60802 to 61403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,708 DEBUG Processing 88/657 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,715 DEBUG Processing 220/675 atomic regions from SNP 65882 to 66482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,753 DEBUG Processing 204/704 atomic regions from SNP 61103 to 61703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,925 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:57:13,954 DEBUG chr16: Signal quantile: 0.992. signal threshold: 16. Best RMSEA: 0.019 2025-01-31 09:57:13,998 DEBUG Processing 89/657 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,001 DEBUG Processing 221/675 atomic regions from SNP 66182 to 66782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,045 DEBUG Processing 205/704 atomic regions from SNP 61403 to 62003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,290 DEBUG Processing 90/657 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,291 DEBUG Processing 222/675 atomic regions from SNP 66482 to 67082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,336 DEBUG Processing 206/704 atomic regions from SNP 61703 to 62303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,577 DEBUG Processing 91/657 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,580 DEBUG Processing 223/675 atomic regions from SNP 66782 to 67382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,625 DEBUG Processing 207/704 atomic regions from SNP 62003 to 62603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,853 DEBUG Processing 92/657 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,856 DEBUG Processing 224/675 atomic regions from SNP 67082 to 67682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,903 DEBUG Processing 208/704 atomic regions from SNP 62303 to 62903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,125 DEBUG Processing 93/657 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,128 DEBUG Processing 225/675 atomic regions from SNP 67382 to 67982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,174 DEBUG Processing 209/704 atomic regions from SNP 62603 to 63203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,394 DEBUG Processing 94/657 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,398 DEBUG Processing 226/675 atomic regions from SNP 67682 to 68282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,443 DEBUG Processing 210/704 atomic regions from SNP 62903 to 63503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,663 DEBUG Processing 95/657 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,667 DEBUG Processing 227/675 atomic regions from SNP 67982 to 68582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,713 DEBUG Processing 211/704 atomic regions from SNP 63203 to 63803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,946 DEBUG Processing 228/675 atomic regions from SNP 68282 to 68882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,950 DEBUG Processing 96/657 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,001 DEBUG Processing 212/704 atomic regions from SNP 63503 to 64103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,228 DEBUG Processing 229/675 atomic regions from SNP 68582 to 69182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,256 DEBUG Processing 97/657 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,284 DEBUG Processing 213/704 atomic regions from SNP 63803 to 64403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,502 DEBUG Processing 230/675 atomic regions from SNP 68882 to 69482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,545 DEBUG Processing 98/657 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,562 DEBUG Processing 214/704 atomic regions from SNP 64103 to 64703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,779 DEBUG Processing 231/675 atomic regions from SNP 69182 to 69782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,835 DEBUG Processing 99/657 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,855 DEBUG Processing 215/704 atomic regions from SNP 64403 to 65003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,058 DEBUG Processing 232/675 atomic regions from SNP 69482 to 70082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,112 DEBUG Processing 100/657 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,128 DEBUG chr16 total SNP count: 167636 2025-01-31 09:57:17,128 DEBUG chr16 length: 98207768 2025-01-31 09:57:17,129 DEBUG ----------------------------------------- 2025-01-31 09:57:17,129 INFO Processing SNPs in chr16 2025-01-31 09:57:17,143 DEBUG Processing 216/704 atomic regions from SNP 64703 to 65303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,291 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 167636)] 2025-01-31 09:57:17,344 DEBUG Processing 233/675 atomic regions from SNP 69782 to 70382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,399 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:57:17,410 DEBUG Processing 101/657 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,436 DEBUG Processing 217/704 atomic regions from SNP 65003 to 65603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,636 DEBUG Processing 234/675 atomic regions from SNP 70082 to 70682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,719 DEBUG Processing 102/657 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,725 DEBUG Processing 218/704 atomic regions from SNP 65303 to 65903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,940 DEBUG Processing 235/675 atomic regions from SNP 70382 to 70982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,012 DEBUG Processing 219/704 atomic regions from SNP 65603 to 66203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,029 DEBUG Processing 103/657 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,219 DEBUG Processing 236/675 atomic regions from SNP 70682 to 71282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,298 DEBUG Processing 220/704 atomic regions from SNP 65903 to 66503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,337 DEBUG Processing 104/657 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,501 DEBUG Processing 237/675 atomic regions from SNP 70982 to 71582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,584 DEBUG Processing 221/704 atomic regions from SNP 66203 to 66803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,643 DEBUG Processing 105/657 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,780 DEBUG Processing 238/675 atomic regions from SNP 71282 to 71882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,868 DEBUG Processing 222/704 atomic regions from SNP 66503 to 67103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,920 DEBUG Processing 106/657 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,059 DEBUG Processing 239/675 atomic regions from SNP 71582 to 72182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,153 DEBUG Processing 223/704 atomic regions from SNP 66803 to 67403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,197 DEBUG Processing 107/657 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,339 DEBUG Processing 240/675 atomic regions from SNP 71882 to 72482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,440 DEBUG Processing 224/704 atomic regions from SNP 67103 to 67703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,475 DEBUG Processing 108/657 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,624 DEBUG Processing 241/675 atomic regions from SNP 72182 to 72782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,727 DEBUG Processing 225/704 atomic regions from SNP 67403 to 68003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,752 DEBUG Processing 109/657 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,937 DEBUG Processing 242/675 atomic regions from SNP 72482 to 73082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,011 DEBUG Processing 226/704 atomic regions from SNP 67703 to 68303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,029 DEBUG Processing 110/657 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,231 DEBUG Processing 243/675 atomic regions from SNP 72782 to 73382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,299 DEBUG Processing 227/704 atomic regions from SNP 68003 to 68603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,308 DEBUG Processing 111/657 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,511 DEBUG Processing 244/675 atomic regions from SNP 73082 to 73682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,587 DEBUG Processing 228/704 atomic regions from SNP 68303 to 68903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,588 DEBUG Processing 112/657 atomic regions from SNP 33411 to 34012 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,789 DEBUG Processing 245/675 atomic regions from SNP 73382 to 73982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,870 DEBUG Processing 113/657 atomic regions from SNP 33712 to 34313 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,876 DEBUG Processing 229/704 atomic regions from SNP 68603 to 69203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,066 DEBUG Processing 246/675 atomic regions from SNP 73682 to 74282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,150 DEBUG Processing 114/657 atomic regions from SNP 34013 to 34614 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,164 DEBUG Processing 230/704 atomic regions from SNP 68903 to 69503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,345 DEBUG Processing 247/675 atomic regions from SNP 73982 to 74582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,429 DEBUG Processing 115/657 atomic regions from SNP 34314 to 34915 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,450 DEBUG Processing 231/704 atomic regions from SNP 69203 to 69803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,626 DEBUG Processing 248/675 atomic regions from SNP 74282 to 74882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,709 DEBUG Processing 116/657 atomic regions from SNP 34615 to 35216 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,738 DEBUG Processing 232/704 atomic regions from SNP 69503 to 70103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,919 DEBUG Processing 249/675 atomic regions from SNP 74582 to 75182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,988 DEBUG Processing 117/657 atomic regions from SNP 34916 to 35517 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,022 DEBUG Processing 233/704 atomic regions from SNP 69803 to 70403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,223 DEBUG Processing 250/675 atomic regions from SNP 74882 to 75482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,268 DEBUG Processing 118/657 atomic regions from SNP 35217 to 35818 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,305 DEBUG Processing 234/704 atomic regions from SNP 70103 to 70703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,502 DEBUG Processing 251/675 atomic regions from SNP 75182 to 75782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,548 DEBUG Processing 119/657 atomic regions from SNP 35518 to 36119 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,589 DEBUG Processing 235/704 atomic regions from SNP 70403 to 71003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,780 DEBUG Processing 252/675 atomic regions from SNP 75482 to 76082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,828 DEBUG Processing 120/657 atomic regions from SNP 35819 to 36420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,871 DEBUG Processing 236/704 atomic regions from SNP 70703 to 71303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,060 DEBUG Processing 253/675 atomic regions from SNP 75782 to 76382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,107 DEBUG Processing 121/657 atomic regions from SNP 36120 to 36721 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,152 DEBUG Processing 237/704 atomic regions from SNP 71003 to 71603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,339 DEBUG Processing 254/675 atomic regions from SNP 76082 to 76682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,387 DEBUG Processing 122/657 atomic regions from SNP 36421 to 37022 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,433 DEBUG Processing 238/704 atomic regions from SNP 71303 to 71903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,622 DEBUG Processing 255/675 atomic regions from SNP 76382 to 76982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,665 DEBUG Processing 123/657 atomic regions from SNP 36722 to 37323 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,713 DEBUG Processing 239/704 atomic regions from SNP 71603 to 72203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,901 DEBUG Processing 256/675 atomic regions from SNP 76682 to 77282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,944 DEBUG Processing 124/657 atomic regions from SNP 37023 to 37624 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,996 DEBUG Processing 240/704 atomic regions from SNP 71903 to 72503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,207 DEBUG Processing 257/675 atomic regions from SNP 76982 to 77582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,224 DEBUG Processing 125/657 atomic regions from SNP 37324 to 37925 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,278 DEBUG Processing 241/704 atomic regions from SNP 72203 to 72803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,505 DEBUG Processing 258/675 atomic regions from SNP 77282 to 77882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,516 DEBUG Processing 126/657 atomic regions from SNP 37625 to 38226 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,565 DEBUG Processing 242/704 atomic regions from SNP 72503 to 73103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,793 DEBUG Processing 259/675 atomic regions from SNP 77582 to 78182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,822 DEBUG Processing 127/657 atomic regions from SNP 37926 to 38527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,852 DEBUG Processing 243/704 atomic regions from SNP 72803 to 73403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,078 DEBUG Processing 260/675 atomic regions from SNP 77882 to 78482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,119 DEBUG Processing 128/657 atomic regions from SNP 38227 to 38828 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,140 DEBUG Processing 244/704 atomic regions from SNP 73103 to 73703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,364 DEBUG Processing 261/675 atomic regions from SNP 78182 to 78782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,400 DEBUG Processing 129/657 atomic regions from SNP 38528 to 39129 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,427 DEBUG Processing 245/704 atomic regions from SNP 73403 to 74003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,650 DEBUG Processing 262/675 atomic regions from SNP 78482 to 79082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,681 DEBUG Processing 130/657 atomic regions from SNP 38829 to 39430 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,715 DEBUG Processing 246/704 atomic regions from SNP 73703 to 74303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,937 DEBUG Processing 263/675 atomic regions from SNP 78782 to 79382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,965 DEBUG Processing 131/657 atomic regions from SNP 39130 to 39731 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,001 DEBUG Processing 247/704 atomic regions from SNP 74003 to 74603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,224 DEBUG Processing 264/675 atomic regions from SNP 79082 to 79682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,248 DEBUG Processing 132/657 atomic regions from SNP 39431 to 40032 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,288 DEBUG Processing 248/704 atomic regions from SNP 74303 to 74903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,512 DEBUG Processing 265/675 atomic regions from SNP 79382 to 79982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,534 DEBUG Processing 133/657 atomic regions from SNP 39732 to 40333 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,575 DEBUG Processing 249/704 atomic regions from SNP 74603 to 75203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,816 DEBUG Processing 266/675 atomic regions from SNP 79682 to 80282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,819 DEBUG Processing 134/657 atomic regions from SNP 40033 to 40634 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,861 DEBUG Processing 250/704 atomic regions from SNP 74903 to 75503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,105 DEBUG Processing 135/657 atomic regions from SNP 40334 to 40935 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,113 DEBUG Processing 267/675 atomic regions from SNP 79982 to 80582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,149 DEBUG Processing 251/704 atomic regions from SNP 75203 to 75803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,392 DEBUG Processing 136/657 atomic regions from SNP 40635 to 41236 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,424 DEBUG Processing 268/675 atomic regions from SNP 80282 to 80882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,435 DEBUG Processing 252/704 atomic regions from SNP 75503 to 76103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,674 DEBUG Processing 137/657 atomic regions from SNP 40936 to 41537 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,722 DEBUG Processing 253/704 atomic regions from SNP 75803 to 76403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,746 DEBUG Processing 269/675 atomic regions from SNP 80582 to 81182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,954 DEBUG Processing 138/657 atomic regions from SNP 41237 to 41838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,007 DEBUG Processing 254/704 atomic regions from SNP 76103 to 76703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,063 DEBUG Processing 270/675 atomic regions from SNP 80882 to 81482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,234 DEBUG Processing 139/657 atomic regions from SNP 41538 to 42139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,292 DEBUG Processing 255/704 atomic regions from SNP 76403 to 77003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,378 DEBUG Processing 271/675 atomic regions from SNP 81182 to 81782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,513 DEBUG Processing 140/657 atomic regions from SNP 41839 to 42440 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,573 DEBUG Processing 256/704 atomic regions from SNP 76703 to 77303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,688 DEBUG Processing 272/675 atomic regions from SNP 81482 to 82082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,789 DEBUG Processing 141/657 atomic regions from SNP 42140 to 42741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,859 DEBUG Processing 257/704 atomic regions from SNP 77003 to 77603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,978 DEBUG Processing 273/675 atomic regions from SNP 81782 to 82382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,068 DEBUG Processing 142/657 atomic regions from SNP 42441 to 43042 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,142 DEBUG Processing 258/704 atomic regions from SNP 77303 to 77903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,261 DEBUG Processing 274/675 atomic regions from SNP 82082 to 82682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,345 DEBUG Processing 143/657 atomic regions from SNP 42742 to 43343 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,426 DEBUG Processing 259/704 atomic regions from SNP 77603 to 78203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,544 DEBUG Processing 275/675 atomic regions from SNP 82382 to 82982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,632 DEBUG Processing 144/657 atomic regions from SNP 43043 to 43644 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,710 DEBUG Processing 260/704 atomic regions from SNP 77903 to 78503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,828 DEBUG Processing 276/675 atomic regions from SNP 82682 to 83282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,911 DEBUG Processing 145/657 atomic regions from SNP 43344 to 43945 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,027 DEBUG Processing 261/704 atomic regions from SNP 78203 to 78803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,111 DEBUG Processing 277/675 atomic regions from SNP 82982 to 83582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,187 DEBUG Processing 146/657 atomic regions from SNP 43645 to 44246 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,336 DEBUG Processing 262/704 atomic regions from SNP 78503 to 79103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,396 DEBUG Processing 278/675 atomic regions from SNP 83282 to 83882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,483 DEBUG Processing 147/657 atomic regions from SNP 43946 to 44547 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,515 DEBUG Segmenting atomic regions: 2025-01-31 09:57:30,591 DEBUG Processing 1/596 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,645 DEBUG Processing 263/704 atomic regions from SNP 78803 to 79403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,688 DEBUG Processing 279/675 atomic regions from SNP 83582 to 84182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,784 DEBUG Processing 148/657 atomic regions from SNP 44247 to 44848 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,854 DEBUG Processing 2/596 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,933 DEBUG Processing 264/704 atomic regions from SNP 79103 to 79703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,977 DEBUG Processing 280/675 atomic regions from SNP 83882 to 84482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,075 DEBUG Processing 149/657 atomic regions from SNP 44548 to 45149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,122 DEBUG Processing 3/596 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,221 DEBUG Processing 265/704 atomic regions from SNP 79403 to 80003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,263 DEBUG Processing 281/675 atomic regions from SNP 84182 to 84782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,356 DEBUG Processing 150/657 atomic regions from SNP 44849 to 45450 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,391 DEBUG Processing 4/596 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,518 DEBUG Processing 266/704 atomic regions from SNP 79703 to 80303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,555 DEBUG Processing 282/675 atomic regions from SNP 84482 to 85082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,641 DEBUG Processing 151/657 atomic regions from SNP 45150 to 45751 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,663 DEBUG Processing 5/596 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,810 DEBUG Processing 267/704 atomic regions from SNP 80003 to 80603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,870 DEBUG Processing 283/675 atomic regions from SNP 84782 to 85382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,927 DEBUG Processing 152/657 atomic regions from SNP 45451 to 46052 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,935 DEBUG Processing 6/596 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,105 DEBUG Processing 268/704 atomic regions from SNP 80303 to 80903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,160 DEBUG Processing 284/675 atomic regions from SNP 85082 to 85682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,210 DEBUG Processing 7/596 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,218 DEBUG Processing 153/657 atomic regions from SNP 45752 to 46353 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,426 DEBUG Processing 269/704 atomic regions from SNP 80603 to 81203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,447 DEBUG Processing 285/675 atomic regions from SNP 85382 to 85982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,482 DEBUG Processing 8/596 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,518 DEBUG Processing 154/657 atomic regions from SNP 46053 to 46654 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,736 DEBUG Processing 286/675 atomic regions from SNP 85682 to 86282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,743 DEBUG Processing 270/704 atomic regions from SNP 80903 to 81503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,754 DEBUG Processing 9/596 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,824 DEBUG Processing 155/657 atomic regions from SNP 46354 to 46955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,025 DEBUG Processing 287/675 atomic regions from SNP 85982 to 86582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,030 DEBUG Processing 10/596 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,036 DEBUG Processing 271/704 atomic regions from SNP 81203 to 81803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,105 DEBUG Processing 156/657 atomic regions from SNP 46655 to 47256 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,307 DEBUG Processing 11/596 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,316 DEBUG Processing 288/675 atomic regions from SNP 86282 to 86882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,331 DEBUG Processing 272/704 atomic regions from SNP 81503 to 82103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,385 DEBUG Processing 157/657 atomic regions from SNP 46956 to 47557 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,595 DEBUG Processing 12/596 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,607 DEBUG Processing 289/675 atomic regions from SNP 86582 to 87182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,629 DEBUG Processing 273/704 atomic regions from SNP 81803 to 82403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,666 DEBUG Processing 158/657 atomic regions from SNP 47257 to 47858 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,886 DEBUG Processing 13/596 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,898 DEBUG Processing 290/675 atomic regions from SNP 86882 to 87482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,924 DEBUG Processing 274/704 atomic regions from SNP 82103 to 82703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,948 DEBUG Processing 159/657 atomic regions from SNP 47558 to 48159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,159 DEBUG Processing 14/596 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,187 DEBUG Processing 291/675 atomic regions from SNP 87182 to 87782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,217 DEBUG Processing 275/704 atomic regions from SNP 82403 to 83003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,231 DEBUG Processing 160/657 atomic regions from SNP 47859 to 48460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,429 DEBUG Processing 15/596 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,472 DEBUG Processing 292/675 atomic regions from SNP 87482 to 88082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,509 DEBUG Processing 276/704 atomic regions from SNP 82703 to 83303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,516 DEBUG Processing 161/657 atomic regions from SNP 48160 to 48761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,698 DEBUG Processing 16/596 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,757 DEBUG Processing 293/675 atomic regions from SNP 87782 to 88382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,800 DEBUG Processing 162/657 atomic regions from SNP 48461 to 49062 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,829 DEBUG Processing 277/704 atomic regions from SNP 83003 to 83603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,968 DEBUG Processing 17/596 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,042 DEBUG Processing 294/675 atomic regions from SNP 88082 to 88682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,081 DEBUG Processing 163/657 atomic regions from SNP 48762 to 49363 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,149 DEBUG Processing 278/704 atomic regions from SNP 83303 to 83903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,237 DEBUG Processing 18/596 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,328 DEBUG Processing 295/675 atomic regions from SNP 88382 to 88982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,365 DEBUG Processing 164/657 atomic regions from SNP 49063 to 49664 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,466 DEBUG Processing 279/704 atomic regions from SNP 83603 to 84203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,508 DEBUG Processing 19/596 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,613 DEBUG Processing 296/675 atomic regions from SNP 88682 to 89282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,646 DEBUG Processing 165/657 atomic regions from SNP 49364 to 49965 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,757 DEBUG Processing 280/704 atomic regions from SNP 83903 to 84503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,779 DEBUG Processing 20/596 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,900 DEBUG Processing 297/675 atomic regions from SNP 88982 to 89582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,928 DEBUG Processing 166/657 atomic regions from SNP 49665 to 50266 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,049 DEBUG Processing 21/596 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,060 DEBUG Processing 281/704 atomic regions from SNP 84203 to 84803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,186 DEBUG Processing 298/675 atomic regions from SNP 89282 to 89882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,211 DEBUG Processing 167/657 atomic regions from SNP 49966 to 50567 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,320 DEBUG Processing 22/596 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,375 DEBUG Processing 282/704 atomic regions from SNP 84503 to 85103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,473 DEBUG Processing 299/675 atomic regions from SNP 89582 to 90182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,494 DEBUG Processing 168/657 atomic regions from SNP 50267 to 50868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,590 DEBUG Processing 23/596 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,664 DEBUG Processing 283/704 atomic regions from SNP 84803 to 85403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,769 DEBUG Processing 300/675 atomic regions from SNP 89882 to 90482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,781 DEBUG Processing 169/657 atomic regions from SNP 50568 to 51169 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,860 DEBUG Processing 24/596 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,955 DEBUG Processing 284/704 atomic regions from SNP 85103 to 85703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,068 DEBUG Processing 170/657 atomic regions from SNP 50869 to 51470 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,095 DEBUG Processing 301/675 atomic regions from SNP 90182 to 90782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,130 DEBUG Processing 25/596 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,241 DEBUG Processing 285/704 atomic regions from SNP 85403 to 86003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,353 DEBUG Processing 171/657 atomic regions from SNP 51170 to 51771 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,358 DEBUG Segmenting atomic regions: 2025-01-31 09:57:37,405 DEBUG Processing 26/596 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,421 DEBUG Processing 302/675 atomic regions from SNP 90482 to 91082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,430 DEBUG Processing 1/557 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,529 DEBUG Processing 286/704 atomic regions from SNP 85703 to 86303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,644 DEBUG Processing 172/657 atomic regions from SNP 51471 to 52072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,678 DEBUG Processing 27/596 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,689 DEBUG Processing 2/557 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,728 DEBUG Processing 303/675 atomic regions from SNP 90782 to 91382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,817 DEBUG Processing 287/704 atomic regions from SNP 86003 to 86603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,930 DEBUG Processing 173/657 atomic regions from SNP 51772 to 52373 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,954 DEBUG Processing 28/596 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,976 DEBUG Processing 3/557 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,029 DEBUG Processing 304/675 atomic regions from SNP 91082 to 91682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,122 DEBUG Processing 288/704 atomic regions from SNP 86303 to 86903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,217 DEBUG Processing 174/657 atomic regions from SNP 52073 to 52674 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,225 DEBUG Processing 29/596 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,270 DEBUG Processing 4/557 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,346 DEBUG Processing 305/675 atomic regions from SNP 91382 to 91982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,443 DEBUG Processing 289/704 atomic regions from SNP 86603 to 87203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,503 DEBUG Processing 175/657 atomic regions from SNP 52374 to 52975 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,512 DEBUG Processing 30/596 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,549 DEBUG Processing 5/557 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,660 DEBUG Processing 306/675 atomic regions from SNP 91682 to 92282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,750 DEBUG Processing 290/704 atomic regions from SNP 86903 to 87503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,786 DEBUG Processing 31/596 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,791 DEBUG Processing 176/657 atomic regions from SNP 52675 to 53276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,830 DEBUG Processing 6/557 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,983 DEBUG Processing 307/675 atomic regions from SNP 91982 to 92582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,046 DEBUG Processing 291/704 atomic regions from SNP 87203 to 87803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:39,058 DEBUG Processing 32/596 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,078 DEBUG Processing 177/657 atomic regions from SNP 52976 to 53577 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,126 DEBUG Processing 7/557 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,305 DEBUG Processing 308/675 atomic regions from SNP 92282 to 92882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,334 DEBUG Processing 33/596 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,343 DEBUG Processing 292/704 atomic regions from SNP 87503 to 88103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:39,366 DEBUG Processing 178/657 atomic regions from SNP 53277 to 53878 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,430 DEBUG Processing 8/557 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,607 DEBUG Processing 34/596 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,609 DEBUG Processing 309/675 atomic regions from SNP 92582 to 93182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,639 DEBUG Processing 293/704 atomic regions from SNP 87803 to 88403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:39,655 DEBUG Processing 179/657 atomic regions from SNP 53578 to 54179 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,731 DEBUG Processing 9/557 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,897 DEBUG Processing 310/675 atomic regions from SNP 92882 to 93482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,899 DEBUG Processing 35/596 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,934 DEBUG Processing 294/704 atomic regions from SNP 88103 to 88703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:39,942 DEBUG Processing 180/657 atomic regions from SNP 53879 to 54480 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,033 DEBUG Processing 10/557 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,185 DEBUG Processing 311/675 atomic regions from SNP 93182 to 93782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,185 DEBUG Processing 36/596 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,229 DEBUG Processing 181/657 atomic regions from SNP 54180 to 54781 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,231 DEBUG Processing 295/704 atomic regions from SNP 88403 to 89003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,319 DEBUG Processing 11/557 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,457 DEBUG Processing 37/596 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,471 DEBUG Processing 312/675 atomic regions from SNP 93482 to 94082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,519 DEBUG Processing 182/657 atomic regions from SNP 54481 to 55082 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,528 DEBUG Processing 296/704 atomic regions from SNP 88703 to 89303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,612 DEBUG Processing 12/557 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,731 DEBUG Processing 38/596 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,760 DEBUG Processing 313/675 atomic regions from SNP 93782 to 94382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,808 DEBUG Processing 183/657 atomic regions from SNP 54782 to 55383 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,842 DEBUG Processing 297/704 atomic regions from SNP 89003 to 89603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,883 DEBUG Processing 13/557 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,004 DEBUG Processing 39/596 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,047 DEBUG Processing 314/675 atomic regions from SNP 94082 to 94682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,095 DEBUG Processing 184/657 atomic regions from SNP 55083 to 55684 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,146 DEBUG Processing 298/704 atomic regions from SNP 89303 to 89903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:41,151 DEBUG Processing 14/557 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,278 DEBUG Processing 40/596 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,335 DEBUG Processing 315/675 atomic regions from SNP 94382 to 94982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,384 DEBUG Processing 185/657 atomic regions from SNP 55384 to 55985 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,424 DEBUG Processing 15/557 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,442 DEBUG Processing 299/704 atomic regions from SNP 89603 to 90203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:41,553 DEBUG Processing 41/596 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,624 DEBUG Processing 316/675 atomic regions from SNP 94682 to 95282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,672 DEBUG Processing 186/657 atomic regions from SNP 55685 to 56286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,693 DEBUG Processing 16/557 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,741 DEBUG Processing 300/704 atomic regions from SNP 89903 to 90503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:41,824 DEBUG Processing 42/596 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,911 DEBUG Processing 317/675 atomic regions from SNP 94982 to 95582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,959 DEBUG Processing 17/557 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,960 DEBUG Processing 187/657 atomic regions from SNP 55986 to 56587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,065 DEBUG Processing 301/704 atomic regions from SNP 90203 to 90803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,093 DEBUG Processing 43/596 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,195 DEBUG Processing 318/675 atomic regions from SNP 95282 to 95882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,224 DEBUG Processing 18/557 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,248 DEBUG Processing 188/657 atomic regions from SNP 56287 to 56888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,358 DEBUG Processing 302/704 atomic regions from SNP 90503 to 91103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,361 DEBUG Processing 44/596 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,483 DEBUG Processing 319/675 atomic regions from SNP 95582 to 96182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,492 DEBUG Processing 19/557 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,535 DEBUG Processing 189/657 atomic regions from SNP 56588 to 57189 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,632 DEBUG Processing 45/596 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,658 DEBUG Processing 303/704 atomic regions from SNP 90803 to 91403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,756 DEBUG Processing 20/557 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,768 DEBUG Processing 320/675 atomic regions from SNP 95882 to 96482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,823 DEBUG Processing 190/657 atomic regions from SNP 56889 to 57490 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,903 DEBUG Processing 46/596 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,955 DEBUG Processing 304/704 atomic regions from SNP 91103 to 91703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,021 DEBUG Processing 21/557 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,052 DEBUG Processing 321/675 atomic regions from SNP 96182 to 96782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,109 DEBUG Processing 191/657 atomic regions from SNP 57190 to 57791 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,171 DEBUG Processing 47/596 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,247 DEBUG Processing 305/704 atomic regions from SNP 91403 to 92003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,290 DEBUG Processing 22/557 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,337 DEBUG Processing 322/675 atomic regions from SNP 96482 to 97082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,392 DEBUG Processing 192/657 atomic regions from SNP 57491 to 58092 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,441 DEBUG Processing 48/596 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,542 DEBUG Processing 306/704 atomic regions from SNP 91703 to 92303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,557 DEBUG Processing 23/557 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,635 DEBUG Processing 323/675 atomic regions from SNP 96782 to 97382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,682 DEBUG Processing 193/657 atomic regions from SNP 57792 to 58393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,706 DEBUG Processing 49/596 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,822 DEBUG Processing 24/557 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,835 DEBUG Processing 307/704 atomic regions from SNP 92003 to 92603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,956 DEBUG Processing 324/675 atomic regions from SNP 97082 to 97682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,974 DEBUG Processing 194/657 atomic regions from SNP 58093 to 58694 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,974 DEBUG Processing 50/596 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,085 DEBUG Processing 25/557 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,129 DEBUG Processing 308/704 atomic regions from SNP 92303 to 92903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,248 DEBUG Processing 51/596 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,262 DEBUG Processing 195/657 atomic regions from SNP 58394 to 58995 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,276 DEBUG Processing 325/675 atomic regions from SNP 97382 to 97982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,348 DEBUG Processing 26/557 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,421 DEBUG Processing 309/704 atomic regions from SNP 92603 to 93203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,517 DEBUG Processing 52/596 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,549 DEBUG Processing 196/657 atomic regions from SNP 58695 to 59296 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,598 DEBUG Processing 326/675 atomic regions from SNP 97682 to 98282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,612 DEBUG Processing 27/557 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,708 DEBUG Processing 310/704 atomic regions from SNP 92903 to 93503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,802 DEBUG Processing 53/596 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,835 DEBUG Processing 197/657 atomic regions from SNP 58996 to 59597 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,879 DEBUG Processing 28/557 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,896 DEBUG Processing 327/675 atomic regions from SNP 97982 to 98582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,996 DEBUG Processing 311/704 atomic regions from SNP 93203 to 93803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,099 DEBUG Processing 54/596 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,123 DEBUG Processing 198/657 atomic regions from SNP 59297 to 59898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,145 DEBUG Processing 29/557 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,194 DEBUG Processing 328/675 atomic regions from SNP 98282 to 98882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,290 DEBUG Processing 312/704 atomic regions from SNP 93503 to 94103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,393 DEBUG Processing 55/596 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,413 DEBUG Processing 30/557 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,423 DEBUG Processing 199/657 atomic regions from SNP 59598 to 60199 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,498 DEBUG Processing 329/675 atomic regions from SNP 98582 to 99182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,598 DEBUG Processing 313/704 atomic regions from SNP 93803 to 94403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,664 DEBUG Processing 56/596 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,684 DEBUG Processing 31/557 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,718 DEBUG Processing 200/657 atomic regions from SNP 59899 to 60500 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,783 DEBUG Processing 330/675 atomic regions from SNP 98882 to 99482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,919 DEBUG Processing 314/704 atomic regions from SNP 94103 to 94703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,935 DEBUG Processing 57/596 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,970 DEBUG Processing 32/557 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,004 DEBUG Processing 201/657 atomic regions from SNP 60200 to 60801 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,069 DEBUG Processing 331/675 atomic regions from SNP 99182 to 99782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,211 DEBUG Processing 58/596 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,226 DEBUG Processing 315/704 atomic regions from SNP 94403 to 95003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,276 DEBUG Processing 33/557 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,292 DEBUG Processing 202/657 atomic regions from SNP 60501 to 61102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,371 DEBUG Processing 332/675 atomic regions from SNP 99482 to 100082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,484 DEBUG Processing 59/596 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,543 DEBUG Processing 316/704 atomic regions from SNP 94703 to 95303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,572 DEBUG Processing 34/557 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,578 DEBUG Processing 203/657 atomic regions from SNP 60802 to 61403 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,696 DEBUG Processing 333/675 atomic regions from SNP 99782 to 100382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,755 DEBUG Processing 60/596 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,842 DEBUG Processing 35/557 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,856 DEBUG Processing 317/704 atomic regions from SNP 95003 to 95603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,868 DEBUG Processing 204/657 atomic regions from SNP 61103 to 61704 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,024 DEBUG Processing 334/675 atomic regions from SNP 100082 to 100682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,027 DEBUG Processing 61/596 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,113 DEBUG Processing 36/557 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,160 DEBUG Processing 205/657 atomic regions from SNP 61404 to 62005 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,175 DEBUG Processing 318/704 atomic regions from SNP 95303 to 95903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:47,304 DEBUG Processing 62/596 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,334 DEBUG Processing 335/675 atomic regions from SNP 100382 to 100982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,382 DEBUG Processing 37/557 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,448 DEBUG Processing 206/657 atomic regions from SNP 61705 to 62306 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,470 DEBUG Processing 319/704 atomic regions from SNP 95603 to 96203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:47,578 DEBUG Processing 63/596 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,625 DEBUG Processing 336/675 atomic regions from SNP 100682 to 101282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,649 DEBUG Processing 38/557 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,736 DEBUG Processing 207/657 atomic regions from SNP 62006 to 62607 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,765 DEBUG Processing 320/704 atomic regions from SNP 95903 to 96503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:47,852 DEBUG Processing 64/596 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,919 DEBUG Processing 39/557 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,920 DEBUG Processing 337/675 atomic regions from SNP 100982 to 101582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,022 DEBUG Processing 208/657 atomic regions from SNP 62307 to 62908 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,083 DEBUG Processing 321/704 atomic regions from SNP 96203 to 96803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,124 DEBUG Processing 65/596 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,191 DEBUG Processing 40/557 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,225 DEBUG Processing 338/675 atomic regions from SNP 101282 to 101882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,309 DEBUG Processing 209/657 atomic regions from SNP 62608 to 63209 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,396 DEBUG Processing 66/596 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,403 DEBUG Processing 322/704 atomic regions from SNP 96503 to 97103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,461 DEBUG Processing 41/557 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,513 DEBUG Processing 339/675 atomic regions from SNP 101582 to 102182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,595 DEBUG Processing 210/657 atomic regions from SNP 62909 to 63510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,669 DEBUG Processing 67/596 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,729 DEBUG Processing 323/704 atomic regions from SNP 96803 to 97403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,733 DEBUG Processing 42/557 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,799 DEBUG Processing 340/675 atomic regions from SNP 101882 to 102482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,879 DEBUG Processing 211/657 atomic regions from SNP 63210 to 63811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,939 DEBUG Processing 68/596 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,004 DEBUG Processing 43/557 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,036 DEBUG Processing 324/704 atomic regions from SNP 97103 to 97703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,087 DEBUG Processing 341/675 atomic regions from SNP 102182 to 102782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,164 DEBUG Processing 212/657 atomic regions from SNP 63511 to 64112 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,208 DEBUG Processing 69/596 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,298 DEBUG Processing 44/557 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,330 DEBUG Processing 325/704 atomic regions from SNP 97403 to 98003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,373 DEBUG Processing 342/675 atomic regions from SNP 102482 to 103082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,453 DEBUG Processing 213/657 atomic regions from SNP 63812 to 64413 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,481 DEBUG Processing 70/596 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,593 DEBUG Processing 45/557 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,623 DEBUG Processing 326/704 atomic regions from SNP 97703 to 98303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,662 DEBUG Processing 343/675 atomic regions from SNP 102782 to 103382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,741 DEBUG Processing 214/657 atomic regions from SNP 64113 to 64714 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,753 DEBUG Processing 71/596 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,886 DEBUG Processing 46/557 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,938 DEBUG Processing 327/704 atomic regions from SNP 98003 to 98603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,952 DEBUG Processing 344/675 atomic regions from SNP 103082 to 103682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,025 DEBUG Processing 215/657 atomic regions from SNP 64414 to 65015 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,026 DEBUG Processing 72/596 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,175 DEBUG Processing 47/557 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,243 DEBUG Processing 345/675 atomic regions from SNP 103382 to 103982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,255 DEBUG Processing 328/704 atomic regions from SNP 98303 to 98903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:50,302 DEBUG Processing 73/596 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,312 DEBUG Processing 216/657 atomic regions from SNP 64715 to 65316 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,471 DEBUG Processing 48/557 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,534 DEBUG Processing 346/675 atomic regions from SNP 103682 to 104282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,578 DEBUG Processing 74/596 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,590 DEBUG Processing 329/704 atomic regions from SNP 98603 to 99203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:50,606 DEBUG Processing 217/657 atomic regions from SNP 65016 to 65617 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,765 DEBUG Processing 49/557 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,824 DEBUG Processing 347/675 atomic regions from SNP 103982 to 104582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,851 DEBUG Processing 75/596 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,897 DEBUG Processing 218/657 atomic regions from SNP 65317 to 65918 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,912 DEBUG Processing 330/704 atomic regions from SNP 98903 to 99503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,054 DEBUG Processing 50/557 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,111 DEBUG Processing 348/675 atomic regions from SNP 104282 to 104882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,123 DEBUG Processing 76/596 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,185 DEBUG Processing 219/657 atomic regions from SNP 65618 to 66219 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,221 DEBUG Processing 331/704 atomic regions from SNP 99203 to 99803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,327 DEBUG Processing 51/557 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,398 DEBUG Processing 77/596 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,401 DEBUG Processing 349/675 atomic regions from SNP 104582 to 105182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,473 DEBUG Processing 220/657 atomic regions from SNP 65919 to 66520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,529 DEBUG Processing 332/704 atomic regions from SNP 99503 to 100103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,606 DEBUG Processing 52/557 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,674 DEBUG Processing 78/596 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,701 DEBUG Processing 350/675 atomic regions from SNP 104882 to 105482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,761 DEBUG Processing 221/657 atomic regions from SNP 66220 to 66821 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,847 DEBUG Processing 333/704 atomic regions from SNP 99803 to 100403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,874 DEBUG Processing 53/557 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,946 DEBUG Processing 79/596 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,013 DEBUG Processing 351/675 atomic regions from SNP 105182 to 105782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,046 DEBUG Processing 222/657 atomic regions from SNP 66521 to 67122 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,143 DEBUG Processing 54/557 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,152 DEBUG Processing 334/704 atomic regions from SNP 100103 to 100703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,218 DEBUG Processing 80/596 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,326 DEBUG Processing 352/675 atomic regions from SNP 105482 to 106082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,333 DEBUG Processing 223/657 atomic regions from SNP 66822 to 67423 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,416 DEBUG Processing 55/557 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,454 DEBUG Processing 335/704 atomic regions from SNP 100403 to 101003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,491 DEBUG Processing 81/596 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,620 DEBUG Processing 224/657 atomic regions from SNP 67123 to 67724 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,657 DEBUG Processing 353/675 atomic regions from SNP 105782 to 106382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,685 DEBUG Processing 56/557 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,753 DEBUG Processing 336/704 atomic regions from SNP 100703 to 101303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,764 DEBUG Processing 82/596 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,906 DEBUG Processing 225/657 atomic regions from SNP 67424 to 68025 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,957 DEBUG Processing 57/557 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,982 DEBUG Processing 354/675 atomic regions from SNP 106082 to 106682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,038 DEBUG Processing 83/596 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,049 DEBUG Processing 337/704 atomic regions from SNP 101003 to 101603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,192 DEBUG Processing 226/657 atomic regions from SNP 67725 to 68326 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,225 DEBUG Processing 58/557 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,296 DEBUG Processing 355/675 atomic regions from SNP 106382 to 106982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,313 DEBUG Processing 84/596 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,345 DEBUG Processing 338/704 atomic regions from SNP 101303 to 101903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,480 DEBUG Processing 227/657 atomic regions from SNP 68026 to 68627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,495 DEBUG Processing 59/557 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,591 DEBUG Processing 85/596 atomic regions from SNP 25284 to 25884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,607 DEBUG Processing 356/675 atomic regions from SNP 106682 to 107282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,641 DEBUG Processing 339/704 atomic regions from SNP 101603 to 102203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,767 DEBUG Processing 228/657 atomic regions from SNP 68327 to 68928 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,773 DEBUG Processing 60/557 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,865 DEBUG Processing 86/596 atomic regions from SNP 25584 to 26184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,926 DEBUG Processing 357/675 atomic regions from SNP 106982 to 107582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,933 DEBUG Processing 340/704 atomic regions from SNP 101903 to 102503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,054 DEBUG Processing 229/657 atomic regions from SNP 68628 to 69229 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,060 DEBUG Processing 61/557 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,139 DEBUG Processing 87/596 atomic regions from SNP 25884 to 26484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,228 DEBUG Processing 341/704 atomic regions from SNP 102203 to 102803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,248 DEBUG Processing 358/675 atomic regions from SNP 107282 to 107882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:54,346 DEBUG Processing 230/657 atomic regions from SNP 68929 to 69530 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,359 DEBUG Processing 62/557 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,411 DEBUG Processing 88/596 atomic regions from SNP 26184 to 26784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,522 DEBUG Processing 342/704 atomic regions from SNP 102503 to 103103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,562 DEBUG Processing 359/675 atomic regions from SNP 107582 to 108182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:54,634 DEBUG Processing 231/657 atomic regions from SNP 69230 to 69831 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,654 DEBUG Processing 63/557 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,683 DEBUG Processing 89/596 atomic regions from SNP 26484 to 27084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,835 DEBUG Processing 343/704 atomic regions from SNP 102803 to 103403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,852 DEBUG Processing 360/675 atomic regions from SNP 107882 to 108482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:54,921 DEBUG Processing 232/657 atomic regions from SNP 69531 to 70132 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,951 DEBUG Processing 64/557 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,957 DEBUG Processing 90/596 atomic regions from SNP 26784 to 27384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,138 DEBUG Processing 361/675 atomic regions from SNP 108182 to 108782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,157 DEBUG Processing 344/704 atomic regions from SNP 103103 to 103703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,210 DEBUG Processing 233/657 atomic regions from SNP 69832 to 70433 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,231 DEBUG Processing 91/596 atomic regions from SNP 27084 to 27684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,236 DEBUG Processing 65/557 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,429 DEBUG Processing 362/675 atomic regions from SNP 108482 to 109082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,456 DEBUG Processing 345/704 atomic regions from SNP 103403 to 104003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,496 DEBUG Processing 234/657 atomic regions from SNP 70133 to 70734 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,506 DEBUG Processing 92/596 atomic regions from SNP 27384 to 27984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,524 DEBUG Processing 66/557 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,718 DEBUG Processing 363/675 atomic regions from SNP 108782 to 109382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,753 DEBUG Processing 346/704 atomic regions from SNP 103703 to 104303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,781 DEBUG Processing 93/596 atomic regions from SNP 27684 to 28284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,786 DEBUG Processing 235/657 atomic regions from SNP 70434 to 71035 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,817 DEBUG Processing 67/557 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,001 DEBUG Processing 364/675 atomic regions from SNP 109082 to 109682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,053 DEBUG Processing 347/704 atomic regions from SNP 104003 to 104603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,055 DEBUG Processing 94/596 atomic regions from SNP 27984 to 28584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,079 DEBUG Processing 236/657 atomic regions from SNP 70735 to 71336 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,085 DEBUG Processing 68/557 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,289 DEBUG Processing 365/675 atomic regions from SNP 109382 to 109982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,332 DEBUG Processing 95/596 atomic regions from SNP 28284 to 28884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,352 DEBUG Processing 348/704 atomic regions from SNP 104303 to 104903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,358 DEBUG Processing 69/557 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,370 DEBUG Processing 237/657 atomic regions from SNP 71036 to 71637 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,579 DEBUG Processing 366/675 atomic regions from SNP 109682 to 110282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,607 DEBUG Processing 96/596 atomic regions from SNP 28584 to 29184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,632 DEBUG Processing 70/557 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,653 DEBUG Processing 349/704 atomic regions from SNP 104603 to 105203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,661 DEBUG Processing 238/657 atomic regions from SNP 71337 to 71938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,870 DEBUG Processing 367/675 atomic regions from SNP 109982 to 110582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,882 DEBUG Processing 97/596 atomic regions from SNP 28884 to 29484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,904 DEBUG Processing 71/557 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,950 DEBUG Processing 239/657 atomic regions from SNP 71638 to 72239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,953 DEBUG Processing 350/704 atomic regions from SNP 104903 to 105503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,157 DEBUG Processing 98/596 atomic regions from SNP 29184 to 29784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,160 DEBUG Processing 368/675 atomic regions from SNP 110282 to 110882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,175 DEBUG Processing 72/557 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,238 DEBUG Processing 240/657 atomic regions from SNP 71939 to 72540 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,254 DEBUG Processing 351/704 atomic regions from SNP 105203 to 105803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,434 DEBUG Processing 99/596 atomic regions from SNP 29484 to 30084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,448 DEBUG Processing 73/557 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,453 DEBUG Processing 369/675 atomic regions from SNP 110582 to 111182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,529 DEBUG Processing 241/657 atomic regions from SNP 72240 to 72841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,554 DEBUG Processing 352/704 atomic regions from SNP 105503 to 106103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,710 DEBUG Processing 100/596 atomic regions from SNP 29784 to 30384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,721 DEBUG Processing 74/557 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,744 DEBUG Processing 370/675 atomic regions from SNP 110882 to 111482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,817 DEBUG Processing 242/657 atomic regions from SNP 72541 to 73142 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,853 DEBUG Processing 353/704 atomic regions from SNP 105803 to 106403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,988 DEBUG Processing 101/596 atomic regions from SNP 30084 to 30684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,994 DEBUG Processing 75/557 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,035 DEBUG Processing 371/675 atomic regions from SNP 111182 to 111782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,106 DEBUG Processing 243/657 atomic regions from SNP 72842 to 73443 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,150 DEBUG Processing 354/704 atomic regions from SNP 106103 to 106703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:58,266 DEBUG Processing 102/596 atomic regions from SNP 30384 to 30984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,267 DEBUG Processing 76/557 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,325 DEBUG Processing 372/675 atomic regions from SNP 111482 to 112082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,396 DEBUG Processing 244/657 atomic regions from SNP 73143 to 73744 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,447 DEBUG Processing 355/704 atomic regions from SNP 106403 to 107003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:58,540 DEBUG Processing 77/557 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,544 DEBUG Processing 103/596 atomic regions from SNP 30684 to 31284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,637 DEBUG Processing 373/675 atomic regions from SNP 111782 to 112382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,687 DEBUG Processing 245/657 atomic regions from SNP 73444 to 74045 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,741 DEBUG Processing 356/704 atomic regions from SNP 106703 to 107303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:58,813 DEBUG Processing 78/557 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,820 DEBUG Processing 104/596 atomic regions from SNP 30984 to 31584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,930 DEBUG Processing 374/675 atomic regions from SNP 112082 to 112682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,977 DEBUG Processing 246/657 atomic regions from SNP 73745 to 74346 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,035 DEBUG Processing 357/704 atomic regions from SNP 107003 to 107603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:59,086 DEBUG Processing 79/557 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,096 DEBUG Processing 105/596 atomic regions from SNP 31284 to 31884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,223 DEBUG Processing 375/675 atomic regions from SNP 112382 to 112982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,267 DEBUG Processing 247/657 atomic regions from SNP 74046 to 74647 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,331 DEBUG Processing 358/704 atomic regions from SNP 107303 to 107903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:59,356 DEBUG Processing 80/557 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,369 DEBUG Processing 106/596 atomic regions from SNP 31584 to 32184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,511 DEBUG Processing 376/675 atomic regions from SNP 112682 to 113282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,556 DEBUG Processing 248/657 atomic regions from SNP 74347 to 74948 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,629 DEBUG Processing 81/557 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,629 DEBUG Processing 359/704 atomic regions from SNP 107603 to 108203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:59,645 DEBUG Processing 107/596 atomic regions from SNP 31884 to 32484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,799 DEBUG Processing 377/675 atomic regions from SNP 112982 to 113582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,842 DEBUG Processing 249/657 atomic regions from SNP 74648 to 75249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,904 DEBUG Processing 82/557 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,921 DEBUG Processing 108/596 atomic regions from SNP 32184 to 32784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,936 DEBUG Processing 360/704 atomic regions from SNP 107903 to 108503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:00,112 DEBUG Processing 378/675 atomic regions from SNP 113282 to 113882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,128 DEBUG Processing 250/657 atomic regions from SNP 74949 to 75550 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,199 DEBUG Processing 83/557 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,201 DEBUG Processing 109/596 atomic regions from SNP 32484 to 33084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,239 DEBUG Processing 361/704 atomic regions from SNP 108203 to 108803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:00,414 DEBUG Processing 251/657 atomic regions from SNP 75250 to 75851 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,439 DEBUG Processing 379/675 atomic regions from SNP 113582 to 114182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,477 DEBUG Processing 110/596 atomic regions from SNP 32784 to 33384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,507 DEBUG Processing 84/557 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,537 DEBUG Processing 362/704 atomic regions from SNP 108503 to 109103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:00,702 DEBUG Processing 252/657 atomic regions from SNP 75551 to 76152 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,745 DEBUG Processing 380/675 atomic regions from SNP 113882 to 114482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,754 DEBUG Processing 111/596 atomic regions from SNP 33084 to 33684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,800 DEBUG Processing 85/557 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,835 DEBUG Processing 363/704 atomic regions from SNP 108803 to 109403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:00,987 DEBUG Processing 253/657 atomic regions from SNP 75852 to 76453 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,031 DEBUG Processing 112/596 atomic regions from SNP 33384 to 33984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,038 DEBUG Processing 381/675 atomic regions from SNP 114182 to 114782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,103 DEBUG Processing 86/557 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,132 DEBUG Processing 364/704 atomic regions from SNP 109103 to 109703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:01,274 DEBUG Processing 254/657 atomic regions from SNP 76153 to 76754 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,306 DEBUG Processing 113/596 atomic regions from SNP 33684 to 34284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,328 DEBUG Processing 382/675 atomic regions from SNP 114482 to 115082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,400 DEBUG Processing 87/557 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,431 DEBUG Processing 365/704 atomic regions from SNP 109403 to 110003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:01,562 DEBUG Processing 255/657 atomic regions from SNP 76454 to 77055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,581 DEBUG Processing 114/596 atomic regions from SNP 33984 to 34584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,619 DEBUG Processing 383/675 atomic regions from SNP 114782 to 115382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,699 DEBUG Processing 88/557 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,728 DEBUG Processing 366/704 atomic regions from SNP 109703 to 110303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:01,850 DEBUG Processing 256/657 atomic regions from SNP 76755 to 77356 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,859 DEBUG Processing 115/596 atomic regions from SNP 34284 to 34884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,910 DEBUG Processing 384/675 atomic regions from SNP 115082 to 115682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,003 DEBUG Processing 89/557 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,029 DEBUG Processing 367/704 atomic regions from SNP 110003 to 110603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:02,134 DEBUG Processing 116/596 atomic regions from SNP 34584 to 35184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,153 DEBUG Processing 257/657 atomic regions from SNP 77056 to 77657 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,200 DEBUG Processing 385/675 atomic regions from SNP 115382 to 115982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,305 DEBUG Processing 90/557 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,325 DEBUG Processing 368/704 atomic regions from SNP 110303 to 110903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:02,409 DEBUG Processing 117/596 atomic regions from SNP 34884 to 35484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,472 DEBUG Processing 258/657 atomic regions from SNP 77357 to 77958 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,492 DEBUG Processing 386/675 atomic regions from SNP 115682 to 116282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,612 DEBUG Processing 91/557 atomic regions from SNP 27090 to 27691 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,619 DEBUG Processing 369/704 atomic regions from SNP 110603 to 111203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:02,682 DEBUG Processing 118/596 atomic regions from SNP 35184 to 35784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,782 DEBUG Processing 387/675 atomic regions from SNP 115982 to 116582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,784 DEBUG Processing 259/657 atomic regions from SNP 77658 to 78259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,926 DEBUG Processing 92/557 atomic regions from SNP 27391 to 27992 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,931 DEBUG Processing 370/704 atomic regions from SNP 110903 to 111503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:02,968 DEBUG Processing 119/596 atomic regions from SNP 35484 to 36084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,089 DEBUG Processing 388/675 atomic regions from SNP 116282 to 116882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,105 DEBUG Processing 260/657 atomic regions from SNP 77959 to 78560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,220 DEBUG Processing 93/557 atomic regions from SNP 27692 to 28293 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,239 DEBUG Processing 371/704 atomic regions from SNP 111203 to 111803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:03,243 DEBUG Processing 120/596 atomic regions from SNP 35784 to 36384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,378 DEBUG Processing 389/675 atomic regions from SNP 116582 to 117182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,396 DEBUG Processing 261/657 atomic regions from SNP 78260 to 78860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,515 DEBUG Processing 94/557 atomic regions from SNP 27993 to 28594 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,524 DEBUG Processing 121/596 atomic regions from SNP 36084 to 36684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,545 DEBUG Processing 372/704 atomic regions from SNP 111503 to 112103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:03,666 DEBUG Processing 390/675 atomic regions from SNP 116882 to 117482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,684 DEBUG Processing 262/657 atomic regions from SNP 78560 to 79160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,782 DEBUG Processing 95/557 atomic regions from SNP 28294 to 28895 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,796 DEBUG Processing 122/596 atomic regions from SNP 36384 to 36984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,841 DEBUG Processing 373/704 atomic regions from SNP 111803 to 112403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:03,951 DEBUG Processing 391/675 atomic regions from SNP 117182 to 117782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,982 DEBUG Processing 263/657 atomic regions from SNP 78860 to 79460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,050 DEBUG Processing 96/557 atomic regions from SNP 28595 to 29196 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,070 DEBUG Processing 123/596 atomic regions from SNP 36684 to 37284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,146 DEBUG Processing 374/704 atomic regions from SNP 112103 to 112703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:04,245 DEBUG Processing 392/675 atomic regions from SNP 117482 to 118082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,280 DEBUG Processing 264/657 atomic regions from SNP 79160 to 79760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,326 DEBUG Processing 97/557 atomic regions from SNP 28896 to 29497 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,352 DEBUG Processing 124/596 atomic regions from SNP 36984 to 37584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,446 DEBUG Processing 375/704 atomic regions from SNP 112403 to 113003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:04,531 DEBUG Processing 393/675 atomic regions from SNP 117782 to 118382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,576 DEBUG Processing 265/657 atomic regions from SNP 79460 to 80060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,592 DEBUG Processing 98/557 atomic regions from SNP 29197 to 29798 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,621 DEBUG Processing 125/596 atomic regions from SNP 37284 to 37884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,748 DEBUG Processing 376/704 atomic regions from SNP 112703 to 113303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:04,821 DEBUG Processing 394/675 atomic regions from SNP 118082 to 118682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,864 DEBUG Processing 99/557 atomic regions from SNP 29498 to 30099 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,873 DEBUG Processing 266/657 atomic regions from SNP 79760 to 80360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,895 DEBUG Processing 126/596 atomic regions from SNP 37584 to 38184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,053 DEBUG Processing 377/704 atomic regions from SNP 113003 to 113603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:05,136 DEBUG Processing 395/675 atomic regions from SNP 118382 to 118982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:05,139 DEBUG Processing 100/557 atomic regions from SNP 29799 to 30400 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,168 DEBUG Processing 127/596 atomic regions from SNP 37884 to 38484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,169 DEBUG Processing 267/657 atomic regions from SNP 80060 to 80660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,345 DEBUG Processing 378/704 atomic regions from SNP 113303 to 113903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:05,395 DEBUG Processing 101/557 atomic regions from SNP 30100 to 30701 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,423 DEBUG Processing 128/596 atomic regions from SNP 38184 to 38784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,428 DEBUG Processing 396/675 atomic regions from SNP 118682 to 119282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:05,444 DEBUG Processing 268/657 atomic regions from SNP 80360 to 80960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,628 DEBUG Processing 379/704 atomic regions from SNP 113603 to 114203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:05,651 DEBUG Processing 102/557 atomic regions from SNP 30401 to 31002 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,683 DEBUG Processing 129/596 atomic regions from SNP 38484 to 39084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,706 DEBUG Processing 397/675 atomic regions from SNP 118982 to 119582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:05,728 DEBUG Processing 269/657 atomic regions from SNP 80660 to 81260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,931 DEBUG Processing 380/704 atomic regions from SNP 113903 to 114503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:05,944 DEBUG Processing 103/557 atomic regions from SNP 30702 to 31303 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,954 DEBUG Processing 130/596 atomic regions from SNP 38784 to 39384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,993 DEBUG Processing 398/675 atomic regions from SNP 119282 to 119882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,013 DEBUG Processing 270/657 atomic regions from SNP 80960 to 81560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,226 DEBUG Processing 131/596 atomic regions from SNP 39084 to 39684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,229 DEBUG Processing 381/704 atomic regions from SNP 114203 to 114803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:06,248 DEBUG Processing 104/557 atomic regions from SNP 31003 to 31604 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,279 DEBUG Processing 399/675 atomic regions from SNP 119582 to 120182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,300 DEBUG Processing 271/657 atomic regions from SNP 81260 to 81860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,498 DEBUG Processing 132/596 atomic regions from SNP 39384 to 39984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,539 DEBUG Processing 105/557 atomic regions from SNP 31304 to 31905 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,546 DEBUG Processing 382/704 atomic regions from SNP 114503 to 115103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:06,565 DEBUG Processing 400/675 atomic regions from SNP 119882 to 120482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,588 DEBUG Processing 272/657 atomic regions from SNP 81560 to 82160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,764 DEBUG Processing 133/596 atomic regions from SNP 39684 to 40284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,806 DEBUG Processing 106/557 atomic regions from SNP 31605 to 32206 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,874 DEBUG Processing 401/675 atomic regions from SNP 120182 to 120782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,878 DEBUG Processing 383/704 atomic regions from SNP 114803 to 115403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:06,880 DEBUG Processing 273/657 atomic regions from SNP 81860 to 82460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,036 DEBUG Processing 134/596 atomic regions from SNP 39984 to 40584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,071 DEBUG Processing 107/557 atomic regions from SNP 31906 to 32507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,175 DEBUG Processing 274/657 atomic regions from SNP 82160 to 82760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,198 DEBUG Processing 402/675 atomic regions from SNP 120482 to 121082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,201 DEBUG Processing 384/704 atomic regions from SNP 115103 to 115703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:07,308 DEBUG Processing 135/596 atomic regions from SNP 40284 to 40884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,366 DEBUG Processing 108/557 atomic regions from SNP 32207 to 32808 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,464 DEBUG Processing 275/657 atomic regions from SNP 82460 to 83060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,519 DEBUG Processing 403/675 atomic regions from SNP 120782 to 121382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,519 DEBUG Processing 385/704 atomic regions from SNP 115403 to 116003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:07,573 DEBUG Processing 136/596 atomic regions from SNP 40584 to 41184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,581 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:58:07,649 DEBUG Processing 109/557 atomic regions from SNP 32508 to 33109 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,777 DEBUG Processing 276/657 atomic regions from SNP 82760 to 83360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,836 DEBUG Processing 404/675 atomic regions from SNP 121082 to 121682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,845 DEBUG Processing 137/596 atomic regions from SNP 40884 to 41484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,851 DEBUG Processing 386/704 atomic regions from SNP 115703 to 116303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:07,913 DEBUG Processing 110/557 atomic regions from SNP 32809 to 33410 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,083 DEBUG Processing 277/657 atomic regions from SNP 83060 to 83660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,111 DEBUG Processing 138/596 atomic regions from SNP 41184 to 41784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,140 DEBUG Processing 405/675 atomic regions from SNP 121382 to 121982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,167 DEBUG Processing 111/557 atomic regions from SNP 33110 to 33711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,180 DEBUG Processing 387/704 atomic regions from SNP 116003 to 116603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:08,369 DEBUG Processing 139/596 atomic regions from SNP 41484 to 42084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,389 DEBUG Processing 278/657 atomic regions from SNP 83360 to 83960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,425 DEBUG Processing 112/557 atomic regions from SNP 33411 to 34012 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,435 DEBUG Processing 406/675 atomic regions from SNP 121682 to 122282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,497 DEBUG Processing 388/704 atomic regions from SNP 116303 to 116903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:08,630 DEBUG Processing 140/596 atomic regions from SNP 41784 to 42384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,677 DEBUG Processing 113/557 atomic regions from SNP 33712 to 34313 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,691 DEBUG Processing 279/657 atomic regions from SNP 83660 to 84260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,717 DEBUG Processing 407/675 atomic regions from SNP 121982 to 122582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,807 DEBUG Processing 389/704 atomic regions from SNP 116603 to 117203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:08,916 DEBUG Processing 141/596 atomic regions from SNP 42084 to 42684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,933 DEBUG Processing 114/557 atomic regions from SNP 34013 to 34614 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,988 DEBUG Processing 280/657 atomic regions from SNP 83960 to 84560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,993 DEBUG Processing 408/675 atomic regions from SNP 122282 to 122882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,112 DEBUG Processing 390/704 atomic regions from SNP 116903 to 117503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:09,178 DEBUG Processing 142/596 atomic regions from SNP 42384 to 42984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,192 DEBUG Processing 115/557 atomic regions from SNP 34314 to 34915 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,260 DEBUG Processing 281/657 atomic regions from SNP 84260 to 84860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,266 DEBUG Processing 409/675 atomic regions from SNP 122582 to 123182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,425 DEBUG Processing 391/704 atomic regions from SNP 117203 to 117803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:09,445 DEBUG Processing 143/596 atomic regions from SNP 42684 to 43284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,454 DEBUG Processing 116/557 atomic regions from SNP 34615 to 35216 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,548 DEBUG Processing 282/657 atomic regions from SNP 84560 to 85160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,551 DEBUG Processing 410/675 atomic regions from SNP 122882 to 123482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,711 DEBUG Processing 144/596 atomic regions from SNP 42984 to 43584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,716 DEBUG Processing 117/557 atomic regions from SNP 34916 to 35517 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,733 DEBUG Processing 392/704 atomic regions from SNP 117503 to 118103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:09,834 DEBUG Processing 283/657 atomic regions from SNP 84860 to 85460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,836 DEBUG Processing 411/675 atomic regions from SNP 123182 to 123782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,980 DEBUG Processing 145/596 atomic regions from SNP 43284 to 43884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,980 DEBUG Processing 118/557 atomic regions from SNP 35217 to 35818 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,056 DEBUG Processing 393/704 atomic regions from SNP 117803 to 118403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:10,115 DEBUG Processing 284/657 atomic regions from SNP 85160 to 85760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,119 DEBUG Processing 412/675 atomic regions from SNP 123482 to 124082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,249 DEBUG Processing 146/596 atomic regions from SNP 43584 to 44184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,252 DEBUG Processing 119/557 atomic regions from SNP 35518 to 36119 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,358 DEBUG Processing 394/704 atomic regions from SNP 118103 to 118703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:10,395 DEBUG Processing 285/657 atomic regions from SNP 85460 to 86060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,399 DEBUG Processing 413/675 atomic regions from SNP 123782 to 124382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,516 DEBUG Processing 120/557 atomic regions from SNP 35819 to 36420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,518 DEBUG Processing 147/596 atomic regions from SNP 43884 to 44484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,648 DEBUG Processing 395/704 atomic regions from SNP 118403 to 119003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:10,679 DEBUG Processing 286/657 atomic regions from SNP 85760 to 86360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,682 DEBUG Processing 414/675 atomic regions from SNP 124082 to 124682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,781 DEBUG Processing 121/557 atomic regions from SNP 36120 to 36721 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,786 DEBUG Processing 148/596 atomic regions from SNP 44184 to 44784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,941 DEBUG Processing 396/704 atomic regions from SNP 118703 to 119303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:10,967 DEBUG Processing 287/657 atomic regions from SNP 86060 to 86660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,971 DEBUG Processing 415/675 atomic regions from SNP 124382 to 124982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:11,042 DEBUG Processing 122/557 atomic regions from SNP 36421 to 37022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,049 DEBUG Processing 149/596 atomic regions from SNP 44484 to 45084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,232 DEBUG Processing 397/704 atomic regions from SNP 119003 to 119603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:11,248 DEBUG Processing 288/657 atomic regions from SNP 86360 to 86960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,274 DEBUG Processing 416/675 atomic regions from SNP 124682 to 125282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:11,300 DEBUG Processing 123/557 atomic regions from SNP 36722 to 37323 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,308 DEBUG Processing 150/596 atomic regions from SNP 44784 to 45384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,522 DEBUG Processing 398/704 atomic regions from SNP 119303 to 119903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:11,529 DEBUG Processing 289/657 atomic regions from SNP 86660 to 87260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,555 DEBUG Processing 417/675 atomic regions from SNP 124982 to 125582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:11,560 DEBUG Processing 124/557 atomic regions from SNP 37023 to 37624 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,570 DEBUG Processing 151/596 atomic regions from SNP 45084 to 45684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,809 DEBUG Processing 290/657 atomic regions from SNP 86960 to 87560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,809 DEBUG Processing 399/704 atomic regions from SNP 119603 to 120203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:11,819 DEBUG Processing 125/557 atomic regions from SNP 37324 to 37925 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,831 DEBUG Processing 152/596 atomic regions from SNP 45384 to 45984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,834 DEBUG Processing 418/675 atomic regions from SNP 125282 to 125882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,082 DEBUG Processing 126/557 atomic regions from SNP 37625 to 38226 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,093 DEBUG Processing 153/596 atomic regions from SNP 45684 to 46284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,094 DEBUG Processing 291/657 atomic regions from SNP 87260 to 87860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,101 DEBUG Processing 400/704 atomic regions from SNP 119903 to 120503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:12,113 DEBUG Processing 419/675 atomic regions from SNP 125582 to 126182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,345 DEBUG Processing 127/557 atomic regions from SNP 37926 to 38527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,358 DEBUG Processing 154/596 atomic regions from SNP 45984 to 46584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,377 DEBUG Processing 292/657 atomic regions from SNP 87560 to 88160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,388 DEBUG Processing 401/704 atomic regions from SNP 120203 to 120803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:12,390 DEBUG Processing 420/675 atomic regions from SNP 125882 to 126482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,604 DEBUG Processing 128/557 atomic regions from SNP 38227 to 38828 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,622 DEBUG Processing 155/596 atomic regions from SNP 46284 to 46884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,655 DEBUG Processing 293/657 atomic regions from SNP 87860 to 88460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,669 DEBUG Processing 421/675 atomic regions from SNP 126182 to 126782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,674 DEBUG Processing 402/704 atomic regions from SNP 120503 to 121103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:12,863 DEBUG Processing 129/557 atomic regions from SNP 38528 to 39129 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,886 DEBUG Processing 156/596 atomic regions from SNP 46584 to 47184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,935 DEBUG Processing 294/657 atomic regions from SNP 88160 to 88760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,948 DEBUG Processing 422/675 atomic regions from SNP 126482 to 127082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,974 DEBUG Processing 403/704 atomic regions from SNP 120803 to 121403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:13,123 DEBUG Processing 130/557 atomic regions from SNP 38829 to 39430 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,150 DEBUG Processing 157/596 atomic regions from SNP 46884 to 47484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,217 DEBUG Processing 295/657 atomic regions from SNP 88460 to 89060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,229 DEBUG Processing 423/675 atomic regions from SNP 126782 to 127382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,285 DEBUG Processing 404/704 atomic regions from SNP 121103 to 121703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:13,384 DEBUG Processing 131/557 atomic regions from SNP 39130 to 39731 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,416 DEBUG Processing 158/596 atomic regions from SNP 47184 to 47784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,500 DEBUG Processing 296/657 atomic regions from SNP 88760 to 89360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,508 DEBUG Processing 424/675 atomic regions from SNP 127082 to 127682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,575 DEBUG Processing 405/704 atomic regions from SNP 121403 to 122003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:13,647 DEBUG Processing 132/557 atomic regions from SNP 39431 to 40032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,683 DEBUG Processing 159/596 atomic regions from SNP 47484 to 48084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,783 DEBUG Processing 297/657 atomic regions from SNP 89060 to 89660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,788 DEBUG Processing 425/675 atomic regions from SNP 127382 to 127982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,869 DEBUG Processing 406/704 atomic regions from SNP 121703 to 122303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:13,912 DEBUG Processing 133/557 atomic regions from SNP 39732 to 40333 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,948 DEBUG Processing 160/596 atomic regions from SNP 47784 to 48384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,066 DEBUG Processing 298/657 atomic regions from SNP 89360 to 89960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,069 DEBUG Processing 426/675 atomic regions from SNP 127682 to 128282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,172 DEBUG Processing 134/557 atomic regions from SNP 40033 to 40634 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,179 DEBUG Processing 407/704 atomic regions from SNP 122003 to 122603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:14,214 DEBUG Processing 161/596 atomic regions from SNP 48084 to 48684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,352 DEBUG Processing 299/657 atomic regions from SNP 89660 to 90260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,355 DEBUG Processing 427/675 atomic regions from SNP 127982 to 128582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,435 DEBUG Processing 135/557 atomic regions from SNP 40334 to 40935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,476 DEBUG Processing 162/596 atomic regions from SNP 48384 to 48984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,484 DEBUG Processing 408/704 atomic regions from SNP 122303 to 122903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:14,639 DEBUG Processing 428/675 atomic regions from SNP 128282 to 128882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,656 DEBUG Processing 300/657 atomic regions from SNP 89960 to 90560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,698 DEBUG Processing 136/557 atomic regions from SNP 40635 to 41236 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,739 DEBUG Processing 163/596 atomic regions from SNP 48684 to 49284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,770 DEBUG Processing 409/704 atomic regions from SNP 122603 to 123203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:14,944 DEBUG Processing 429/675 atomic regions from SNP 128582 to 129182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,955 DEBUG Processing 137/557 atomic regions from SNP 40936 to 41537 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,961 DEBUG Processing 301/657 atomic regions from SNP 90260 to 90860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,007 DEBUG Processing 164/596 atomic regions from SNP 48984 to 49584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,054 DEBUG Processing 410/704 atomic regions from SNP 122903 to 123503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:15,217 DEBUG Processing 138/557 atomic regions from SNP 41237 to 41838 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,241 DEBUG Processing 302/657 atomic regions from SNP 90560 to 91160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,248 DEBUG Processing 430/675 atomic regions from SNP 128882 to 129482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,289 DEBUG Processing 165/596 atomic regions from SNP 49284 to 49884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,340 DEBUG Processing 411/704 atomic regions from SNP 123203 to 123803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:15,481 DEBUG Processing 139/557 atomic regions from SNP 41538 to 42139 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,522 DEBUG Processing 303/657 atomic regions from SNP 90860 to 91460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,528 DEBUG Processing 431/675 atomic regions from SNP 129182 to 129782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,557 DEBUG Processing 166/596 atomic regions from SNP 49584 to 50184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,625 DEBUG Processing 412/704 atomic regions from SNP 123503 to 124103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:15,744 DEBUG Processing 140/557 atomic regions from SNP 41839 to 42440 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,803 DEBUG Processing 304/657 atomic regions from SNP 91160 to 91760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,807 DEBUG Processing 432/675 atomic regions from SNP 129482 to 130082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,819 DEBUG Processing 167/596 atomic regions from SNP 49884 to 50484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,914 DEBUG Processing 413/704 atomic regions from SNP 123803 to 124403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:16,008 DEBUG Processing 141/557 atomic regions from SNP 42140 to 42741 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,082 DEBUG Processing 168/596 atomic regions from SNP 50184 to 50784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,084 DEBUG Processing 305/657 atomic regions from SNP 91460 to 92060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,088 DEBUG Processing 433/675 atomic regions from SNP 129782 to 130382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,201 DEBUG Processing 414/704 atomic regions from SNP 124103 to 124703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:16,274 DEBUG Processing 142/557 atomic regions from SNP 42441 to 43042 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,348 DEBUG Processing 169/596 atomic regions from SNP 50484 to 51084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,365 DEBUG Processing 306/657 atomic regions from SNP 91760 to 92360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,369 DEBUG Processing 434/675 atomic regions from SNP 130082 to 130682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,492 DEBUG Processing 415/704 atomic regions from SNP 124403 to 125003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:16,538 DEBUG Processing 143/557 atomic regions from SNP 42742 to 43343 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,613 DEBUG Processing 170/596 atomic regions from SNP 50784 to 51384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,647 DEBUG Processing 307/657 atomic regions from SNP 92060 to 92660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,650 DEBUG Processing 435/675 atomic regions from SNP 130382 to 130982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,793 DEBUG Processing 416/704 atomic regions from SNP 124703 to 125303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:16,801 DEBUG Processing 144/557 atomic regions from SNP 43043 to 43644 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,878 DEBUG Processing 171/596 atomic regions from SNP 51084 to 51684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,930 DEBUG Processing 308/657 atomic regions from SNP 92360 to 92960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,933 DEBUG Processing 436/675 atomic regions from SNP 130682 to 131282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,065 DEBUG Processing 145/557 atomic regions from SNP 43344 to 43945 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,107 DEBUG Processing 417/704 atomic regions from SNP 125003 to 125603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:17,144 DEBUG Processing 172/596 atomic regions from SNP 51384 to 51984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,212 DEBUG Processing 309/657 atomic regions from SNP 92660 to 93260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,214 DEBUG Processing 437/675 atomic regions from SNP 130982 to 131582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,330 DEBUG Processing 146/557 atomic regions from SNP 43645 to 44246 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,408 DEBUG Processing 173/596 atomic regions from SNP 51684 to 52284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,410 DEBUG Processing 418/704 atomic regions from SNP 125303 to 125903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:17,493 DEBUG Processing 310/657 atomic regions from SNP 92960 to 93560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,496 DEBUG Processing 438/675 atomic regions from SNP 131282 to 131882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,592 DEBUG Processing 147/557 atomic regions from SNP 43946 to 44547 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,677 DEBUG Processing 174/596 atomic regions from SNP 51984 to 52584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,712 DEBUG Processing 419/704 atomic regions from SNP 125603 to 126203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:17,776 DEBUG Processing 311/657 atomic regions from SNP 93260 to 93860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,780 DEBUG Processing 439/675 atomic regions from SNP 131582 to 132182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,853 DEBUG Processing 148/557 atomic regions from SNP 44247 to 44848 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,943 DEBUG Processing 175/596 atomic regions from SNP 52284 to 52884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,025 DEBUG Processing 420/704 atomic regions from SNP 125903 to 126503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:18,059 DEBUG Processing 312/657 atomic regions from SNP 93560 to 94160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,063 DEBUG Processing 440/675 atomic regions from SNP 131882 to 132482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,111 DEBUG Processing 149/557 atomic regions from SNP 44548 to 45149 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,209 DEBUG Processing 176/596 atomic regions from SNP 52584 to 53184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,347 DEBUG Processing 313/657 atomic regions from SNP 93860 to 94460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,347 DEBUG Processing 441/675 atomic regions from SNP 132182 to 132782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,350 DEBUG Processing 421/704 atomic regions from SNP 126203 to 126803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:18,368 DEBUG Processing 150/557 atomic regions from SNP 44849 to 45450 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,476 DEBUG Processing 177/596 atomic regions from SNP 52884 to 53484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,627 DEBUG Processing 151/557 atomic regions from SNP 45150 to 45751 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,631 DEBUG Processing 314/657 atomic regions from SNP 94160 to 94760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,631 DEBUG Processing 442/675 atomic regions from SNP 132482 to 133082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,676 DEBUG Processing 422/704 atomic regions from SNP 126503 to 127103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:18,740 DEBUG Processing 178/596 atomic regions from SNP 53184 to 53784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,891 DEBUG Processing 152/557 atomic regions from SNP 45451 to 46052 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,915 DEBUG Processing 315/657 atomic regions from SNP 94460 to 95060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,917 DEBUG Processing 443/675 atomic regions from SNP 132782 to 133382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,983 DEBUG Processing 423/704 atomic regions from SNP 126803 to 127403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:19,005 DEBUG Processing 179/596 atomic regions from SNP 53484 to 54084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,152 DEBUG Processing 153/557 atomic regions from SNP 45752 to 46353 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,199 DEBUG Processing 316/657 atomic regions from SNP 94760 to 95360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,216 DEBUG Processing 444/675 atomic regions from SNP 133082 to 133682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,265 DEBUG Processing 180/596 atomic regions from SNP 53784 to 54384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,289 DEBUG Processing 424/704 atomic regions from SNP 127103 to 127703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:19,416 DEBUG Processing 154/557 atomic regions from SNP 46053 to 46654 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,480 DEBUG Processing 317/657 atomic regions from SNP 95060 to 95660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,525 DEBUG Processing 445/675 atomic regions from SNP 133382 to 133982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,530 DEBUG Processing 181/596 atomic regions from SNP 54084 to 54684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,578 DEBUG Processing 425/704 atomic regions from SNP 127403 to 128003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:19,679 DEBUG Processing 155/557 atomic regions from SNP 46354 to 46955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,760 DEBUG Processing 318/657 atomic regions from SNP 95360 to 95960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,802 DEBUG Processing 182/596 atomic regions from SNP 54384 to 54984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,805 DEBUG Processing 446/675 atomic regions from SNP 133682 to 134282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,867 DEBUG Processing 426/704 atomic regions from SNP 127703 to 128303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:19,940 DEBUG Processing 156/557 atomic regions from SNP 46655 to 47256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,041 DEBUG Processing 319/657 atomic regions from SNP 95660 to 96260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,068 DEBUG Processing 183/596 atomic regions from SNP 54684 to 55284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,084 DEBUG Processing 447/675 atomic regions from SNP 133982 to 134582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:20,162 DEBUG Processing 427/704 atomic regions from SNP 128003 to 128603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:20,201 DEBUG Processing 157/557 atomic regions from SNP 46956 to 47557 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,325 DEBUG Processing 320/657 atomic regions from SNP 95960 to 96560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,335 DEBUG Processing 184/596 atomic regions from SNP 54984 to 55584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,364 DEBUG Processing 448/675 atomic regions from SNP 134282 to 134882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:20,451 DEBUG Processing 428/704 atomic regions from SNP 128303 to 128903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:20,463 DEBUG Processing 158/557 atomic regions from SNP 47257 to 47858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,603 DEBUG Processing 185/596 atomic regions from SNP 55284 to 55884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,610 DEBUG Processing 321/657 atomic regions from SNP 96260 to 96860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,672 DEBUG Processing 449/675 atomic regions from SNP 134582 to 135182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:20,724 DEBUG Processing 159/557 atomic regions from SNP 47558 to 48159 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,741 DEBUG Processing 429/704 atomic regions from SNP 128603 to 129203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:20,879 DEBUG Processing 186/596 atomic regions from SNP 55584 to 56184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,893 DEBUG Processing 322/657 atomic regions from SNP 96560 to 97160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,983 DEBUG Processing 160/557 atomic regions from SNP 47859 to 48460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,989 DEBUG Processing 450/675 atomic regions from SNP 134882 to 135482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:21,027 DEBUG Processing 430/704 atomic regions from SNP 128903 to 129503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:21,169 DEBUG Processing 187/596 atomic regions from SNP 55884 to 56484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,176 DEBUG Processing 323/657 atomic regions from SNP 96860 to 97460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,242 DEBUG Processing 161/557 atomic regions from SNP 48160 to 48761 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,279 DEBUG Processing 451/675 atomic regions from SNP 135182 to 135782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:21,311 DEBUG Processing 431/704 atomic regions from SNP 129203 to 129803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:21,439 DEBUG Processing 188/596 atomic regions from SNP 56184 to 56784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,459 DEBUG Processing 324/657 atomic regions from SNP 97160 to 97760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,505 DEBUG Processing 162/557 atomic regions from SNP 48461 to 49062 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,560 DEBUG Processing 452/675 atomic regions from SNP 135482 to 136082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:21,600 DEBUG Processing 432/704 atomic regions from SNP 129503 to 130103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:21,704 DEBUG Processing 189/596 atomic regions from SNP 56484 to 57084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,740 DEBUG Processing 325/657 atomic regions from SNP 97460 to 98060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,779 DEBUG Processing 163/557 atomic regions from SNP 48762 to 49363 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,839 DEBUG Processing 453/675 atomic regions from SNP 135782 to 136382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:21,909 DEBUG Processing 433/704 atomic regions from SNP 129803 to 130403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:21,970 DEBUG Processing 190/596 atomic regions from SNP 56784 to 57384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,024 DEBUG Processing 326/657 atomic regions from SNP 97760 to 98360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,053 DEBUG Processing 164/557 atomic regions from SNP 49063 to 49664 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,117 DEBUG Processing 454/675 atomic regions from SNP 136082 to 136682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:22,229 DEBUG Processing 434/704 atomic regions from SNP 130103 to 130703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:22,240 DEBUG Processing 191/596 atomic regions from SNP 57084 to 57684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,302 DEBUG Processing 327/657 atomic regions from SNP 98060 to 98660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,313 DEBUG Processing 165/557 atomic regions from SNP 49364 to 49965 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,398 DEBUG Processing 455/675 atomic regions from SNP 136382 to 136982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:22,527 DEBUG Processing 192/596 atomic regions from SNP 57384 to 57984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,548 DEBUG Processing 435/704 atomic regions from SNP 130403 to 131003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:22,572 DEBUG Processing 166/557 atomic regions from SNP 49665 to 50266 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,583 DEBUG Processing 328/657 atomic regions from SNP 98360 to 98960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,677 DEBUG Processing 456/675 atomic regions from SNP 136682 to 137282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:22,824 DEBUG Processing 193/596 atomic regions from SNP 57684 to 58284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,837 DEBUG Processing 167/557 atomic regions from SNP 49966 to 50567 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,865 DEBUG Processing 329/657 atomic regions from SNP 98660 to 99260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,875 DEBUG Processing 436/704 atomic regions from SNP 130703 to 131303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:22,954 DEBUG Processing 457/675 atomic regions from SNP 136982 to 137582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:23,108 DEBUG Processing 168/557 atomic regions from SNP 50267 to 50868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,120 DEBUG Processing 194/596 atomic regions from SNP 57984 to 58584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,143 DEBUG Processing 330/657 atomic regions from SNP 98960 to 99560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:23,200 DEBUG Processing 437/704 atomic regions from SNP 131003 to 131603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:23,231 DEBUG Processing 458/675 atomic regions from SNP 137282 to 137882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:23,381 DEBUG Processing 169/557 atomic regions from SNP 50568 to 51169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,424 DEBUG Processing 195/596 atomic regions from SNP 58284 to 58884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,425 DEBUG Processing 331/657 atomic regions from SNP 99260 to 99860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:23,506 DEBUG Processing 459/675 atomic regions from SNP 137582 to 138182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:23,523 DEBUG Processing 438/704 atomic regions from SNP 131303 to 131903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:23,663 DEBUG Processing 170/557 atomic regions from SNP 50869 to 51470 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,708 DEBUG Processing 332/657 atomic regions from SNP 99560 to 100160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:23,719 DEBUG Processing 196/596 atomic regions from SNP 58584 to 59184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,785 DEBUG Processing 460/675 atomic regions from SNP 137882 to 138482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:23,827 DEBUG Processing 439/704 atomic regions from SNP 131603 to 132203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:23,926 DEBUG Processing 171/557 atomic regions from SNP 51170 to 51771 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,989 DEBUG Processing 197/596 atomic regions from SNP 58884 to 59484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,990 DEBUG Processing 333/657 atomic regions from SNP 99860 to 100460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,079 DEBUG Processing 461/675 atomic regions from SNP 138182 to 138782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:24,138 DEBUG Processing 440/704 atomic regions from SNP 131903 to 132503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:24,201 DEBUG Processing 172/557 atomic regions from SNP 51471 to 52072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,257 DEBUG Processing 198/596 atomic regions from SNP 59184 to 59784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:24,274 DEBUG Processing 334/657 atomic regions from SNP 100160 to 100760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,380 DEBUG Processing 462/675 atomic regions from SNP 138482 to 139082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:24,427 DEBUG Processing 441/704 atomic regions from SNP 132203 to 132803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:24,486 DEBUG Processing 173/557 atomic regions from SNP 51772 to 52373 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,519 DEBUG Processing 199/596 atomic regions from SNP 59484 to 60084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:24,549 DEBUG Processing 335/657 atomic regions from SNP 100460 to 101060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,655 DEBUG Processing 463/675 atomic regions from SNP 138782 to 139382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:24,711 DEBUG Processing 442/704 atomic regions from SNP 132503 to 133103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:24,758 DEBUG Processing 174/557 atomic regions from SNP 52073 to 52674 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,778 DEBUG Processing 200/596 atomic regions from SNP 59784 to 60384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:24,822 DEBUG Processing 336/657 atomic regions from SNP 100760 to 101360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,927 DEBUG Processing 464/675 atomic regions from SNP 139082 to 139682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:24,992 DEBUG Processing 443/704 atomic regions from SNP 132803 to 133403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:25,031 DEBUG Processing 175/557 atomic regions from SNP 52374 to 52975 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,034 DEBUG Processing 201/596 atomic regions from SNP 60084 to 60684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,092 DEBUG Processing 337/657 atomic regions from SNP 101060 to 101660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,200 DEBUG Processing 465/675 atomic regions from SNP 139382 to 139982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:25,274 DEBUG Processing 444/704 atomic regions from SNP 133103 to 133703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:25,290 DEBUG Processing 202/596 atomic regions from SNP 60384 to 60984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,319 DEBUG Processing 176/557 atomic regions from SNP 52675 to 53276 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,368 DEBUG Processing 338/657 atomic regions from SNP 101360 to 101960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,470 DEBUG Processing 466/675 atomic regions from SNP 139682 to 140282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:25,550 DEBUG Processing 445/704 atomic regions from SNP 133403 to 134003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:25,550 DEBUG Processing 203/596 atomic regions from SNP 60684 to 61284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,594 DEBUG Processing 177/557 atomic regions from SNP 52976 to 53577 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,634 DEBUG Processing 339/657 atomic regions from SNP 101660 to 102260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,734 DEBUG Processing 467/675 atomic regions from SNP 139982 to 140582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:25,811 DEBUG Processing 204/596 atomic regions from SNP 60984 to 61584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,822 DEBUG Processing 446/704 atomic regions from SNP 133703 to 134303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:25,860 DEBUG Processing 178/557 atomic regions from SNP 53277 to 53878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,909 DEBUG Processing 340/657 atomic regions from SNP 101960 to 102560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,013 DEBUG Processing 468/675 atomic regions from SNP 140282 to 140882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:26,104 DEBUG Processing 205/596 atomic regions from SNP 61284 to 61884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,133 DEBUG Processing 447/704 atomic regions from SNP 134003 to 134603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:26,138 DEBUG Processing 179/557 atomic regions from SNP 53578 to 54179 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,184 DEBUG Processing 341/657 atomic regions from SNP 102260 to 102860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,291 DEBUG Processing 469/675 atomic regions from SNP 140582 to 141182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:26,401 DEBUG Processing 180/557 atomic regions from SNP 53879 to 54480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,401 DEBUG Processing 206/596 atomic regions from SNP 61584 to 62184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,434 DEBUG Processing 448/704 atomic regions from SNP 134303 to 134903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:26,456 DEBUG Processing 342/657 atomic regions from SNP 102560 to 103160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,567 DEBUG Processing 470/675 atomic regions from SNP 140882 to 141482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:26,662 DEBUG Processing 181/557 atomic regions from SNP 54180 to 54781 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,689 DEBUG Processing 207/596 atomic regions from SNP 61884 to 62484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,737 DEBUG Processing 449/704 atomic regions from SNP 134603 to 135203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:26,740 DEBUG Processing 343/657 atomic regions from SNP 102860 to 103460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,850 DEBUG Processing 471/675 atomic regions from SNP 141182 to 141782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:26,924 DEBUG Processing 182/557 atomic regions from SNP 54481 to 55082 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,954 DEBUG Processing 208/596 atomic regions from SNP 62184 to 62784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,025 DEBUG Processing 344/657 atomic regions from SNP 103160 to 103760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,031 DEBUG Processing 450/704 atomic regions from SNP 134903 to 135503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:27,130 DEBUG Processing 472/675 atomic regions from SNP 141482 to 142082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:27,183 DEBUG Processing 183/557 atomic regions from SNP 54782 to 55383 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,213 DEBUG Processing 209/596 atomic regions from SNP 62484 to 63084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,305 DEBUG Processing 345/657 atomic regions from SNP 103460 to 104060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,319 DEBUG Processing 451/704 atomic regions from SNP 135203 to 135803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:27,403 DEBUG Processing 473/675 atomic regions from SNP 141782 to 142382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:27,441 DEBUG Processing 184/557 atomic regions from SNP 55083 to 55684 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,467 DEBUG Processing 210/596 atomic regions from SNP 62784 to 63384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,580 DEBUG Processing 346/657 atomic regions from SNP 103760 to 104360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,600 DEBUG Processing 452/704 atomic regions from SNP 135503 to 136103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:27,673 DEBUG Processing 474/675 atomic regions from SNP 142082 to 142682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:27,707 DEBUG Processing 185/557 atomic regions from SNP 55384 to 55985 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,722 DEBUG Processing 211/596 atomic regions from SNP 63084 to 63684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,860 DEBUG Processing 347/657 atomic regions from SNP 104060 to 104660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,893 DEBUG Processing 453/704 atomic regions from SNP 135803 to 136403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:27,957 DEBUG Processing 475/675 atomic regions from SNP 142382 to 142982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:27,970 DEBUG Processing 186/557 atomic regions from SNP 55685 to 56286 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,986 DEBUG Processing 212/596 atomic regions from SNP 63384 to 63984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,142 DEBUG Processing 348/657 atomic regions from SNP 104360 to 104960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,179 DEBUG Processing 454/704 atomic regions from SNP 136103 to 136703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:28,224 DEBUG Processing 187/557 atomic regions from SNP 55986 to 56587 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,232 DEBUG Processing 476/675 atomic regions from SNP 142682 to 143282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:28,242 DEBUG Processing 213/596 atomic regions from SNP 63684 to 64284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,423 DEBUG Processing 349/657 atomic regions from SNP 104660 to 105260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,459 DEBUG Processing 455/704 atomic regions from SNP 136403 to 137003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:28,479 DEBUG Processing 188/557 atomic regions from SNP 56287 to 56888 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,500 DEBUG Processing 214/596 atomic regions from SNP 63984 to 64584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,507 DEBUG Processing 477/675 atomic regions from SNP 142982 to 143582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:28,722 DEBUG Processing 350/657 atomic regions from SNP 104960 to 105560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,748 DEBUG Processing 189/557 atomic regions from SNP 56588 to 57189 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,762 DEBUG Processing 456/704 atomic regions from SNP 136703 to 137303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:28,772 DEBUG Processing 215/596 atomic regions from SNP 64284 to 64884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,793 DEBUG Processing 478/675 atomic regions from SNP 143282 to 143882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:29,015 DEBUG Processing 351/657 atomic regions from SNP 105260 to 105860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,020 DEBUG Processing 190/557 atomic regions from SNP 56889 to 57490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,046 DEBUG Processing 216/596 atomic regions from SNP 64584 to 65184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,060 DEBUG Processing 457/704 atomic regions from SNP 137003 to 137603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:29,078 DEBUG Processing 479/675 atomic regions from SNP 143582 to 144182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:29,288 DEBUG Processing 191/557 atomic regions from SNP 57190 to 57791 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,306 DEBUG Processing 352/657 atomic regions from SNP 105560 to 106160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,318 DEBUG Processing 217/596 atomic regions from SNP 64884 to 65484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,354 DEBUG Processing 458/704 atomic regions from SNP 137303 to 137903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:29,362 DEBUG Processing 480/675 atomic regions from SNP 143882 to 144482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:29,554 DEBUG Processing 192/557 atomic regions from SNP 57491 to 58092 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,591 DEBUG Processing 218/596 atomic regions from SNP 65184 to 65784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,597 DEBUG Processing 353/657 atomic regions from SNP 105860 to 106460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,647 DEBUG Processing 481/675 atomic regions from SNP 144182 to 144782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:29,650 DEBUG Processing 459/704 atomic regions from SNP 137603 to 138203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:29,816 DEBUG Processing 193/557 atomic regions from SNP 57792 to 58393 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,862 DEBUG Processing 219/596 atomic regions from SNP 65484 to 66084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,886 DEBUG Processing 354/657 atomic regions from SNP 106160 to 106760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,934 DEBUG Processing 482/675 atomic regions from SNP 144482 to 145082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:29,944 DEBUG Processing 460/704 atomic regions from SNP 137903 to 138503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:30,080 DEBUG Processing 194/557 atomic regions from SNP 58093 to 58694 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,129 DEBUG Processing 220/596 atomic regions from SNP 65784 to 66384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,175 DEBUG Processing 355/657 atomic regions from SNP 106460 to 107060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:30,218 DEBUG Processing 483/675 atomic regions from SNP 144782 to 145382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:30,238 DEBUG Processing 461/704 atomic regions from SNP 138203 to 138803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:30,344 DEBUG Processing 195/557 atomic regions from SNP 58394 to 58995 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,395 DEBUG Processing 221/596 atomic regions from SNP 66084 to 66684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,476 DEBUG Processing 356/657 atomic regions from SNP 106760 to 107360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:30,502 DEBUG Processing 484/675 atomic regions from SNP 145082 to 145682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:30,533 DEBUG Processing 462/704 atomic regions from SNP 138503 to 139103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:30,630 DEBUG Processing 196/557 atomic regions from SNP 58695 to 59296 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,663 DEBUG Processing 222/596 atomic regions from SNP 66384 to 66984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,790 DEBUG Processing 485/675 atomic regions from SNP 145382 to 145982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:30,801 DEBUG Processing 357/657 atomic regions from SNP 107060 to 107660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:30,831 DEBUG Processing 463/704 atomic regions from SNP 138803 to 139403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:30,920 DEBUG Processing 197/557 atomic regions from SNP 58996 to 59597 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,932 DEBUG Processing 223/596 atomic regions from SNP 66684 to 67284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:31,078 DEBUG Processing 486/675 atomic regions from SNP 145682 to 146282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:31,123 DEBUG Processing 358/657 atomic regions from SNP 107360 to 107960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,130 DEBUG Processing 464/704 atomic regions from SNP 139103 to 139703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:31,199 DEBUG Processing 224/596 atomic regions from SNP 66984 to 67584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:31,203 DEBUG Processing 198/557 atomic regions from SNP 59297 to 59898 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,359 DEBUG Processing 487/675 atomic regions from SNP 145982 to 146582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:31,414 DEBUG Processing 359/657 atomic regions from SNP 107660 to 108260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,425 DEBUG Processing 465/704 atomic regions from SNP 139403 to 140003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:31,469 DEBUG Processing 199/557 atomic regions from SNP 59598 to 60199 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,471 DEBUG Processing 225/596 atomic regions from SNP 67284 to 67884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:31,640 DEBUG Processing 488/675 atomic regions from SNP 146282 to 146882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:31,717 DEBUG Processing 360/657 atomic regions from SNP 107960 to 108560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,727 DEBUG Processing 466/704 atomic regions from SNP 139703 to 140303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:31,733 DEBUG Processing 200/557 atomic regions from SNP 59899 to 60500 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,739 DEBUG Processing 226/596 atomic regions from SNP 67584 to 68184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:31,919 DEBUG Processing 489/675 atomic regions from SNP 146582 to 147182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:31,998 DEBUG Processing 201/557 atomic regions from SNP 60200 to 60801 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,009 DEBUG Processing 227/596 atomic regions from SNP 67884 to 68484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:32,018 DEBUG Processing 361/657 atomic regions from SNP 108260 to 108860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,046 DEBUG Processing 467/704 atomic regions from SNP 140003 to 140603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:32,203 DEBUG Processing 490/675 atomic regions from SNP 146882 to 147482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:32,265 DEBUG Processing 202/557 atomic regions from SNP 60501 to 61102 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,277 DEBUG Processing 228/596 atomic regions from SNP 68184 to 68784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:32,324 DEBUG Processing 362/657 atomic regions from SNP 108560 to 109160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,341 DEBUG Processing 468/704 atomic regions from SNP 140303 to 140903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:32,489 DEBUG Processing 491/675 atomic regions from SNP 147182 to 147782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:32,548 DEBUG Processing 203/557 atomic regions from SNP 60802 to 61403 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,550 DEBUG Processing 229/596 atomic regions from SNP 68484 to 69084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:32,617 DEBUG Processing 363/657 atomic regions from SNP 108860 to 109460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,676 DEBUG Processing 469/704 atomic regions from SNP 140603 to 141203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:32,774 DEBUG Processing 492/675 atomic regions from SNP 147482 to 148082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:32,808 DEBUG Processing 204/557 atomic regions from SNP 61103 to 61704 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,814 DEBUG Processing 230/596 atomic regions from SNP 68784 to 69384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:32,895 DEBUG Processing 364/657 atomic regions from SNP 109160 to 109760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,969 DEBUG Processing 470/704 atomic regions from SNP 140903 to 141503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:33,058 DEBUG Processing 493/675 atomic regions from SNP 147782 to 148382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:33,072 DEBUG Processing 205/557 atomic regions from SNP 61404 to 62005 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,080 DEBUG Processing 231/596 atomic regions from SNP 69084 to 69684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:33,178 DEBUG Processing 365/657 atomic regions from SNP 109460 to 110060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,259 DEBUG Processing 471/704 atomic regions from SNP 141203 to 141803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:33,332 DEBUG Processing 206/557 atomic regions from SNP 61705 to 62306 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,337 DEBUG Processing 494/675 atomic regions from SNP 148082 to 148682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:33,342 DEBUG Processing 232/596 atomic regions from SNP 69384 to 69984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:33,454 DEBUG Processing 366/657 atomic regions from SNP 109760 to 110360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,546 DEBUG Processing 472/704 atomic regions from SNP 141503 to 142103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:33,603 DEBUG Processing 207/557 atomic regions from SNP 62006 to 62607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,604 DEBUG Processing 233/596 atomic regions from SNP 69684 to 70284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:33,616 DEBUG Processing 495/675 atomic regions from SNP 148382 to 148982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:33,729 DEBUG Processing 367/657 atomic regions from SNP 110060 to 110660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,830 DEBUG Processing 473/704 atomic regions from SNP 141803 to 142403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:33,867 DEBUG Processing 234/596 atomic regions from SNP 69984 to 70584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:33,888 DEBUG Processing 208/557 atomic regions from SNP 62307 to 62908 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,893 DEBUG Processing 496/675 atomic regions from SNP 148682 to 149282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:34,031 DEBUG Processing 368/657 atomic regions from SNP 110360 to 110960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,113 DEBUG Processing 474/704 atomic regions from SNP 142103 to 142703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:34,124 DEBUG Processing 235/596 atomic regions from SNP 70284 to 70884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:34,167 DEBUG Processing 497/675 atomic regions from SNP 148982 to 149582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:34,170 DEBUG Processing 209/557 atomic regions from SNP 62608 to 63209 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,320 DEBUG Processing 369/657 atomic regions from SNP 110660 to 111260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,382 DEBUG Processing 236/596 atomic regions from SNP 70584 to 71184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:34,394 DEBUG Processing 475/704 atomic regions from SNP 142403 to 143003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:34,439 DEBUG Processing 498/675 atomic regions from SNP 149282 to 149882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:34,452 DEBUG Processing 210/557 atomic regions from SNP 62909 to 63510 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,592 DEBUG Processing 370/657 atomic regions from SNP 110960 to 111560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,638 DEBUG Processing 237/596 atomic regions from SNP 70884 to 71484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:34,673 DEBUG Processing 476/704 atomic regions from SNP 142703 to 143303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:34,710 DEBUG Processing 499/675 atomic regions from SNP 149582 to 150182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:34,714 DEBUG Processing 211/557 atomic regions from SNP 63210 to 63811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,859 DEBUG Processing 371/657 atomic regions from SNP 111260 to 111860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,887 DEBUG Processing 238/596 atomic regions from SNP 71184 to 71784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:34,964 DEBUG Processing 477/704 atomic regions from SNP 143003 to 143603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:34,971 DEBUG Processing 212/557 atomic regions from SNP 63511 to 64112 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,973 DEBUG Processing 500/675 atomic regions from SNP 149882 to 150482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:35,127 DEBUG Processing 372/657 atomic regions from SNP 111560 to 112160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,133 DEBUG Processing 239/596 atomic regions from SNP 71484 to 72084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:35,231 DEBUG Processing 213/557 atomic regions from SNP 63812 to 64413 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:35,232 DEBUG Processing 501/675 atomic regions from SNP 150182 to 150782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:35,270 DEBUG Processing 478/704 atomic regions from SNP 143303 to 143903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:35,389 DEBUG Processing 240/596 atomic regions from SNP 71784 to 72384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:35,393 DEBUG Processing 373/657 atomic regions from SNP 111860 to 112460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,498 DEBUG Processing 214/557 atomic regions from SNP 64113 to 64714 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:35,520 DEBUG Processing 502/675 atomic regions from SNP 150482 to 151082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:35,555 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:58:35,586 DEBUG chr17: Signal quantile: 0.987. signal threshold: 16. Best RMSEA: 0.015 2025-01-31 09:58:35,595 DEBUG Processing 479/704 atomic regions from SNP 143603 to 144203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:35,671 DEBUG Processing 241/596 atomic regions from SNP 72084 to 72684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:35,701 DEBUG Processing 374/657 atomic regions from SNP 112160 to 112760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,782 DEBUG Processing 215/557 atomic regions from SNP 64414 to 65015 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:35,819 DEBUG Processing 503/675 atomic regions from SNP 150782 to 151382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:35,894 DEBUG Processing 480/704 atomic regions from SNP 143903 to 144503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:35,941 DEBUG Processing 242/596 atomic regions from SNP 72384 to 72984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:36,020 DEBUG Processing 375/657 atomic regions from SNP 112460 to 113060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:36,049 DEBUG Processing 216/557 atomic regions from SNP 64715 to 65316 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:36,113 DEBUG Processing 504/675 atomic regions from SNP 151082 to 151682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:36,205 DEBUG Processing 243/596 atomic regions from SNP 72684 to 73284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:36,207 DEBUG Processing 481/704 atomic regions from SNP 144203 to 144803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:36,307 DEBUG Processing 376/657 atomic regions from SNP 112760 to 113360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:36,312 DEBUG Processing 217/557 atomic regions from SNP 65016 to 65617 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:36,410 DEBUG Processing 505/675 atomic regions from SNP 151382 to 151982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:36,469 DEBUG Processing 244/596 atomic regions from SNP 72984 to 73584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:36,516 DEBUG Processing 482/704 atomic regions from SNP 144503 to 145103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:36,570 DEBUG Processing 218/557 atomic regions from SNP 65317 to 65918 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:36,585 DEBUG Processing 377/657 atomic regions from SNP 113060 to 113660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:36,705 DEBUG Processing 506/675 atomic regions from SNP 151682 to 152282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:36,729 DEBUG Processing 245/596 atomic regions from SNP 73284 to 73884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:36,795 DEBUG Processing 483/704 atomic regions from SNP 144803 to 145403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:36,820 DEBUG Processing 219/557 atomic regions from SNP 65618 to 66219 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:36,869 DEBUG Processing 378/657 atomic regions from SNP 113360 to 113960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:36,978 DEBUG Processing 507/675 atomic regions from SNP 151982 to 152582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:36,986 DEBUG Processing 246/596 atomic regions from SNP 73584 to 74184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:37,070 DEBUG Processing 220/557 atomic regions from SNP 65919 to 66520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:37,087 DEBUG Processing 484/704 atomic regions from SNP 145103 to 145703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:37,169 DEBUG Processing 379/657 atomic regions from SNP 113660 to 114260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,242 DEBUG Processing 247/596 atomic regions from SNP 73884 to 74484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:37,250 DEBUG Processing 508/675 atomic regions from SNP 152282 to 152882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:37,321 DEBUG Processing 221/557 atomic regions from SNP 66220 to 66821 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:37,388 DEBUG Processing 485/704 atomic regions from SNP 145403 to 146003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:37,446 DEBUG Processing 380/657 atomic regions from SNP 113960 to 114560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,504 DEBUG Processing 248/596 atomic regions from SNP 74184 to 74784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:37,530 DEBUG Processing 509/675 atomic regions from SNP 152582 to 153182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:37,587 DEBUG Processing 222/557 atomic regions from SNP 66521 to 67122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:37,685 DEBUG Processing 486/704 atomic regions from SNP 145703 to 146303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:37,730 DEBUG Processing 381/657 atomic regions from SNP 114260 to 114860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,771 DEBUG Processing 249/596 atomic regions from SNP 74484 to 75084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:37,814 DEBUG Processing 510/675 atomic regions from SNP 152882 to 153482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:37,848 DEBUG Processing 223/557 atomic regions from SNP 66822 to 67423 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:37,980 DEBUG Processing 487/704 atomic regions from SNP 146003 to 146603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:38,010 DEBUG Processing 382/657 atomic regions from SNP 114560 to 115160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,034 DEBUG Processing 250/596 atomic regions from SNP 74784 to 75384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:38,103 DEBUG Processing 224/557 atomic regions from SNP 67123 to 67724 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:38,115 DEBUG Processing 511/675 atomic regions from SNP 153182 to 153782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:38,273 DEBUG Processing 488/704 atomic regions from SNP 146303 to 146903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:38,295 DEBUG Processing 383/657 atomic regions from SNP 114860 to 115460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,299 DEBUG Processing 251/596 atomic regions from SNP 75084 to 75684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:38,362 DEBUG Processing 225/557 atomic regions from SNP 67424 to 68025 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:38,420 DEBUG Processing 512/675 atomic regions from SNP 153482 to 154082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:38,568 DEBUG Processing 252/596 atomic regions from SNP 75384 to 75984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:38,572 DEBUG Processing 489/704 atomic regions from SNP 146603 to 147203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:38,584 DEBUG Processing 384/657 atomic regions from SNP 115160 to 115760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,626 DEBUG Processing 226/557 atomic regions from SNP 67725 to 68326 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:38,730 DEBUG chr17 total SNP count: 158792 2025-01-31 09:58:38,730 DEBUG chr17 length: 94987271 2025-01-31 09:58:38,731 DEBUG ----------------------------------------- 2025-01-31 09:58:38,731 INFO Processing SNPs in chr17 2025-01-31 09:58:38,737 DEBUG Processing 513/675 atomic regions from SNP 153782 to 154382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:38,839 DEBUG Processing 253/596 atomic regions from SNP 75684 to 76284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:38,871 DEBUG Processing 490/704 atomic regions from SNP 146903 to 147503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:38,876 DEBUG Processing 385/657 atomic regions from SNP 115460 to 116060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,886 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 158792)] 2025-01-31 09:58:38,888 DEBUG Processing 227/557 atomic regions from SNP 68026 to 68627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:38,990 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:39,030 DEBUG Processing 514/675 atomic regions from SNP 154082 to 154682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:39,109 DEBUG Processing 254/596 atomic regions from SNP 75984 to 76584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:39,157 DEBUG Processing 228/557 atomic regions from SNP 68327 to 68928 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:39,172 DEBUG Processing 491/704 atomic regions from SNP 147203 to 147803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:39,173 DEBUG Processing 386/657 atomic regions from SNP 115760 to 116360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:39,313 DEBUG Processing 515/675 atomic regions from SNP 154382 to 154982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:39,376 DEBUG Processing 255/596 atomic regions from SNP 76284 to 76884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:39,422 DEBUG Processing 229/557 atomic regions from SNP 68628 to 69229 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:39,468 DEBUG Processing 387/657 atomic regions from SNP 116060 to 116660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:39,481 DEBUG Processing 492/704 atomic regions from SNP 147503 to 148103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:39,594 DEBUG Processing 516/675 atomic regions from SNP 154682 to 155282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:39,646 DEBUG Processing 256/596 atomic regions from SNP 76584 to 77184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:39,684 DEBUG Processing 230/557 atomic regions from SNP 68929 to 69530 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:39,755 DEBUG Processing 388/657 atomic regions from SNP 116360 to 116960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:39,774 DEBUG Processing 493/704 atomic regions from SNP 147803 to 148403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:39,895 DEBUG Processing 517/675 atomic regions from SNP 154982 to 155582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:39,916 DEBUG Processing 257/596 atomic regions from SNP 76884 to 77484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:39,944 DEBUG Processing 231/557 atomic regions from SNP 69230 to 69831 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,041 DEBUG Processing 389/657 atomic regions from SNP 116660 to 117260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,079 DEBUG Processing 494/704 atomic regions from SNP 148103 to 148703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:40,188 DEBUG Processing 258/596 atomic regions from SNP 77184 to 77784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:40,188 DEBUG Processing 518/675 atomic regions from SNP 155282 to 155882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:40,210 DEBUG Processing 232/557 atomic regions from SNP 69531 to 70132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,329 DEBUG Processing 390/657 atomic regions from SNP 116960 to 117560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,396 DEBUG Processing 495/704 atomic regions from SNP 148403 to 149003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:40,461 DEBUG Processing 259/596 atomic regions from SNP 77484 to 78084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:40,475 DEBUG Processing 519/675 atomic regions from SNP 155582 to 156182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:40,477 DEBUG Processing 233/557 atomic regions from SNP 69832 to 70433 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,616 DEBUG Processing 391/657 atomic regions from SNP 117260 to 117860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,716 DEBUG Processing 496/704 atomic regions from SNP 148703 to 149303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:40,734 DEBUG Processing 260/596 atomic regions from SNP 77784 to 78384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:40,747 DEBUG Processing 234/557 atomic regions from SNP 70133 to 70734 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,764 DEBUG Processing 520/675 atomic regions from SNP 155882 to 156482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:40,899 DEBUG Processing 392/657 atomic regions from SNP 117560 to 118160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,007 DEBUG Processing 261/596 atomic regions from SNP 78084 to 78684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:41,019 DEBUG Processing 235/557 atomic regions from SNP 70434 to 71035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:41,036 DEBUG Processing 497/704 atomic regions from SNP 149003 to 149603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:41,052 DEBUG Processing 521/675 atomic regions from SNP 156182 to 156782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:41,185 DEBUG Processing 393/657 atomic regions from SNP 117860 to 118460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,279 DEBUG Processing 262/596 atomic regions from SNP 78384 to 78984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:41,287 DEBUG Processing 236/557 atomic regions from SNP 70735 to 71335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:41,338 DEBUG Processing 522/675 atomic regions from SNP 156482 to 157082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:41,348 DEBUG Processing 498/704 atomic regions from SNP 149303 to 149903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:41,469 DEBUG Processing 394/657 atomic regions from SNP 118160 to 118760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,550 DEBUG Processing 263/596 atomic regions from SNP 78684 to 79284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:41,554 DEBUG Processing 237/557 atomic regions from SNP 71035 to 71635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:41,623 DEBUG Processing 523/675 atomic regions from SNP 156782 to 157382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:41,662 DEBUG Processing 499/704 atomic regions from SNP 149603 to 150203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:41,752 DEBUG Processing 395/657 atomic regions from SNP 118460 to 119060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,818 DEBUG Processing 238/557 atomic regions from SNP 71335 to 71935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:41,822 DEBUG Processing 264/596 atomic regions from SNP 78984 to 79584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:41,907 DEBUG Processing 524/675 atomic regions from SNP 157082 to 157682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:41,960 DEBUG Processing 500/704 atomic regions from SNP 149903 to 150503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:42,046 DEBUG Processing 396/657 atomic regions from SNP 118760 to 119360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:42,083 DEBUG Processing 239/557 atomic regions from SNP 71635 to 72235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:42,092 DEBUG Processing 265/596 atomic regions from SNP 79284 to 79884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:42,191 DEBUG Processing 525/675 atomic regions from SNP 157382 to 157982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:42,253 DEBUG Processing 501/704 atomic regions from SNP 150203 to 150803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:42,334 DEBUG Processing 397/657 atomic regions from SNP 119060 to 119660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:42,347 DEBUG Processing 240/557 atomic regions from SNP 71935 to 72535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:42,362 DEBUG Processing 266/596 atomic regions from SNP 79584 to 80184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:42,476 DEBUG Processing 526/675 atomic regions from SNP 157682 to 158282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:42,550 DEBUG Processing 502/704 atomic regions from SNP 150503 to 151103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:42,613 DEBUG Processing 241/557 atomic regions from SNP 72235 to 72835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:42,622 DEBUG Processing 398/657 atomic regions from SNP 119360 to 119960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:42,631 DEBUG Processing 267/596 atomic regions from SNP 79884 to 80484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:42,760 DEBUG Processing 527/675 atomic regions from SNP 157982 to 158582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:42,847 DEBUG Processing 503/704 atomic regions from SNP 150803 to 151403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:42,880 DEBUG Processing 242/557 atomic regions from SNP 72535 to 73135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:42,902 DEBUG Processing 268/596 atomic regions from SNP 80184 to 80784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:42,911 DEBUG Processing 399/657 atomic regions from SNP 119660 to 120260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,043 DEBUG Processing 528/675 atomic regions from SNP 158282 to 158882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:43,146 DEBUG Processing 243/557 atomic regions from SNP 72835 to 73435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:43,152 DEBUG Processing 504/704 atomic regions from SNP 151103 to 151703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:43,174 DEBUG Processing 269/596 atomic regions from SNP 80484 to 81084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:43,226 DEBUG Processing 400/657 atomic regions from SNP 119960 to 120560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,324 DEBUG Processing 529/675 atomic regions from SNP 158582 to 159182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:43,412 DEBUG Processing 244/557 atomic regions from SNP 73135 to 73735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:43,443 DEBUG Processing 270/596 atomic regions from SNP 80784 to 81384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:43,454 DEBUG Processing 505/704 atomic regions from SNP 151403 to 152003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:43,546 DEBUG Processing 401/657 atomic regions from SNP 120260 to 120860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,608 DEBUG Processing 530/675 atomic regions from SNP 158882 to 159482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:43,676 DEBUG Processing 245/557 atomic regions from SNP 73435 to 74035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:43,713 DEBUG Processing 271/596 atomic regions from SNP 81084 to 81684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:43,749 DEBUG Processing 506/704 atomic regions from SNP 151703 to 152303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:43,863 DEBUG Processing 402/657 atomic regions from SNP 120560 to 121160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,914 DEBUG Processing 531/675 atomic regions from SNP 159182 to 159782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:43,939 DEBUG Processing 246/557 atomic regions from SNP 73735 to 74335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:43,980 DEBUG Processing 272/596 atomic regions from SNP 81384 to 81984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:44,039 DEBUG Processing 507/704 atomic regions from SNP 152003 to 152603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:44,187 DEBUG Processing 403/657 atomic regions from SNP 120860 to 121460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:44,207 DEBUG Processing 532/675 atomic regions from SNP 159482 to 160082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:44,213 DEBUG Processing 247/557 atomic regions from SNP 74035 to 74635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:44,248 DEBUG Processing 273/596 atomic regions from SNP 81684 to 82284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:44,329 DEBUG Processing 508/704 atomic regions from SNP 152303 to 152903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:44,481 DEBUG Processing 248/557 atomic regions from SNP 74335 to 74935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:44,495 DEBUG Processing 533/675 atomic regions from SNP 159782 to 160382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:44,507 DEBUG Processing 404/657 atomic regions from SNP 121160 to 121760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:44,518 DEBUG Processing 274/596 atomic regions from SNP 81984 to 82584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:44,623 DEBUG Processing 509/704 atomic regions from SNP 152603 to 153203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:44,751 DEBUG Processing 249/557 atomic regions from SNP 74635 to 75235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:44,784 DEBUG Processing 534/675 atomic regions from SNP 160082 to 160682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:44,790 DEBUG Processing 275/596 atomic regions from SNP 82284 to 82884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:44,813 DEBUG Processing 405/657 atomic regions from SNP 121460 to 122060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:44,915 DEBUG Processing 510/704 atomic regions from SNP 152903 to 153503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:45,018 DEBUG Processing 250/557 atomic regions from SNP 74935 to 75535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:45,063 DEBUG Processing 276/596 atomic regions from SNP 82584 to 83184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,072 DEBUG Processing 535/675 atomic regions from SNP 160382 to 160982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:45,100 DEBUG Processing 406/657 atomic regions from SNP 121760 to 122360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:45,208 DEBUG Processing 511/704 atomic regions from SNP 153203 to 153803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:45,283 DEBUG Processing 251/557 atomic regions from SNP 75235 to 75835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:45,335 DEBUG Processing 277/596 atomic regions from SNP 82884 to 83484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,358 DEBUG Processing 536/675 atomic regions from SNP 160682 to 161282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:45,385 DEBUG Processing 407/657 atomic regions from SNP 122060 to 122660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:45,502 DEBUG Processing 512/704 atomic regions from SNP 153503 to 154103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:45,547 DEBUG Processing 252/557 atomic regions from SNP 75535 to 76135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:45,604 DEBUG Processing 278/596 atomic regions from SNP 83184 to 83784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,648 DEBUG Processing 537/675 atomic regions from SNP 160982 to 161582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:45,670 DEBUG Processing 408/657 atomic regions from SNP 122360 to 122960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:45,796 DEBUG Processing 513/704 atomic regions from SNP 153803 to 154403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:45,810 DEBUG Processing 253/557 atomic regions from SNP 75835 to 76435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:45,872 DEBUG Processing 279/596 atomic regions from SNP 83484 to 84084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,934 DEBUG Processing 538/675 atomic regions from SNP 161282 to 161882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:45,956 DEBUG Processing 409/657 atomic regions from SNP 122660 to 123260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,075 DEBUG Processing 254/557 atomic regions from SNP 76135 to 76735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:46,093 DEBUG Processing 514/704 atomic regions from SNP 154103 to 154703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:46,142 DEBUG Processing 280/596 atomic regions from SNP 83784 to 84384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,236 DEBUG Processing 539/675 atomic regions from SNP 161582 to 162182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:46,244 DEBUG Processing 410/657 atomic regions from SNP 122960 to 123560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,342 DEBUG Processing 255/557 atomic regions from SNP 76435 to 77035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:46,389 DEBUG Processing 515/704 atomic regions from SNP 154403 to 155003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:46,412 DEBUG Processing 281/596 atomic regions from SNP 84084 to 84684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,530 DEBUG Processing 411/657 atomic regions from SNP 123260 to 123860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,554 DEBUG Processing 540/675 atomic regions from SNP 161882 to 162482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:46,604 DEBUG Processing 256/557 atomic regions from SNP 76735 to 77335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:46,681 DEBUG Processing 516/704 atomic regions from SNP 154703 to 155303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:46,682 DEBUG Processing 282/596 atomic regions from SNP 84384 to 84984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,817 DEBUG Processing 412/657 atomic regions from SNP 123560 to 124160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,868 DEBUG Processing 257/557 atomic regions from SNP 77035 to 77635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:46,870 DEBUG Processing 541/675 atomic regions from SNP 162182 to 162782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:46,951 DEBUG Processing 283/596 atomic regions from SNP 84684 to 85284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,974 DEBUG Processing 517/704 atomic regions from SNP 155003 to 155603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:47,104 DEBUG Processing 413/657 atomic regions from SNP 123860 to 124460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:47,135 DEBUG Processing 258/557 atomic regions from SNP 77335 to 77935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:47,171 DEBUG Processing 542/675 atomic regions from SNP 162482 to 163082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:47,218 DEBUG Processing 284/596 atomic regions from SNP 84984 to 85584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:47,267 DEBUG Processing 518/704 atomic regions from SNP 155303 to 155903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:47,393 DEBUG Processing 414/657 atomic regions from SNP 124160 to 124760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:47,402 DEBUG Processing 259/557 atomic regions from SNP 77635 to 78235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:47,460 DEBUG Processing 543/675 atomic regions from SNP 162782 to 163382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:47,482 DEBUG Processing 285/596 atomic regions from SNP 85284 to 85884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:47,558 DEBUG Processing 519/704 atomic regions from SNP 155603 to 156203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:47,668 DEBUG Processing 260/557 atomic regions from SNP 77935 to 78535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:47,683 DEBUG Processing 415/657 atomic regions from SNP 124460 to 125060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:47,745 DEBUG Processing 544/675 atomic regions from SNP 163082 to 163682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:47,751 DEBUG Processing 286/596 atomic regions from SNP 85584 to 86184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:47,849 DEBUG Processing 520/704 atomic regions from SNP 155903 to 156503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:47,933 DEBUG Processing 261/557 atomic regions from SNP 78235 to 78835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:47,971 DEBUG Processing 416/657 atomic regions from SNP 124760 to 125360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,023 DEBUG Processing 287/596 atomic regions from SNP 85884 to 86484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,033 DEBUG Processing 545/675 atomic regions from SNP 163382 to 163982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:48,139 DEBUG Processing 521/704 atomic regions from SNP 156203 to 156803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:48,195 DEBUG Processing 262/557 atomic regions from SNP 78535 to 79135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:48,259 DEBUG Processing 417/657 atomic regions from SNP 125060 to 125660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,291 DEBUG Processing 288/596 atomic regions from SNP 86184 to 86784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,342 DEBUG Processing 546/675 atomic regions from SNP 163682 to 164282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:48,430 DEBUG Processing 522/704 atomic regions from SNP 156503 to 157103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:48,455 DEBUG Processing 263/557 atomic regions from SNP 78835 to 79435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:48,552 DEBUG Processing 418/657 atomic regions from SNP 125360 to 125960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,565 DEBUG Processing 289/596 atomic regions from SNP 86484 to 87084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,665 DEBUG Processing 547/675 atomic regions from SNP 163982 to 164582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:48,717 DEBUG Processing 264/557 atomic regions from SNP 79135 to 79735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:48,724 DEBUG Processing 523/704 atomic regions from SNP 156803 to 157403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:48,835 DEBUG Processing 290/596 atomic regions from SNP 86784 to 87384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,841 DEBUG Processing 419/657 atomic regions from SNP 125660 to 126260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,977 DEBUG Processing 548/675 atomic regions from SNP 164282 to 164882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:48,982 DEBUG Processing 265/557 atomic regions from SNP 79435 to 80035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:49,019 DEBUG Processing 524/704 atomic regions from SNP 157103 to 157703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:49,105 DEBUG Processing 291/596 atomic regions from SNP 87084 to 87684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,128 DEBUG Processing 420/657 atomic regions from SNP 125960 to 126560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,250 DEBUG Processing 266/557 atomic regions from SNP 79735 to 80335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:49,265 DEBUG Processing 549/675 atomic regions from SNP 164582 to 165182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:49,311 DEBUG Processing 525/704 atomic regions from SNP 157403 to 158003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:49,375 DEBUG Processing 292/596 atomic regions from SNP 87384 to 87984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,415 DEBUG Processing 421/657 atomic regions from SNP 126260 to 126860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,516 DEBUG Processing 267/557 atomic regions from SNP 80035 to 80635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:49,552 DEBUG Processing 550/675 atomic regions from SNP 164882 to 165482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:49,601 DEBUG Processing 526/704 atomic regions from SNP 157703 to 158303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:49,643 DEBUG Processing 293/596 atomic regions from SNP 87684 to 88284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,699 DEBUG Processing 422/657 atomic regions from SNP 126560 to 127160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,779 DEBUG Processing 268/557 atomic regions from SNP 80335 to 80935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:49,861 DEBUG Processing 551/675 atomic regions from SNP 165182 to 165782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:49,893 DEBUG Processing 527/704 atomic regions from SNP 158003 to 158603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:49,909 DEBUG Processing 294/596 atomic regions from SNP 87984 to 88584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,003 DEBUG Processing 423/657 atomic regions from SNP 126860 to 127460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:50,038 DEBUG Processing 269/557 atomic regions from SNP 80635 to 81235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:50,174 DEBUG Processing 552/675 atomic regions from SNP 165482 to 166082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:50,179 DEBUG Processing 295/596 atomic regions from SNP 88284 to 88884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,188 DEBUG Processing 528/704 atomic regions from SNP 158303 to 158903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:50,301 DEBUG Processing 270/557 atomic regions from SNP 80935 to 81535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:50,324 DEBUG Processing 424/657 atomic regions from SNP 127160 to 127760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:50,453 DEBUG Processing 296/596 atomic regions from SNP 88584 to 89184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,484 DEBUG Processing 529/704 atomic regions from SNP 158603 to 159203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:50,485 DEBUG Processing 553/675 atomic regions from SNP 165782 to 166382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:50,566 DEBUG Processing 271/557 atomic regions from SNP 81235 to 81835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:50,627 DEBUG Processing 425/657 atomic regions from SNP 127460 to 128060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:50,721 DEBUG Processing 297/596 atomic regions from SNP 88884 to 89484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,780 DEBUG Processing 530/704 atomic regions from SNP 158903 to 159503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:50,799 DEBUG Processing 554/675 atomic regions from SNP 166082 to 166682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:50,827 DEBUG Processing 272/557 atomic regions from SNP 81535 to 82135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:50,939 DEBUG Processing 426/657 atomic regions from SNP 127760 to 128360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:50,985 DEBUG Processing 298/596 atomic regions from SNP 89184 to 89784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,075 DEBUG Processing 531/704 atomic regions from SNP 159203 to 159803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:51,094 DEBUG Processing 273/557 atomic regions from SNP 81835 to 82435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:51,096 DEBUG Processing 555/675 atomic regions from SNP 166382 to 166982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:51,250 DEBUG Processing 299/596 atomic regions from SNP 89484 to 90084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,255 DEBUG Processing 427/657 atomic regions from SNP 128060 to 128660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:51,363 DEBUG Processing 274/557 atomic regions from SNP 82135 to 82735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:51,372 DEBUG Processing 532/704 atomic regions from SNP 159503 to 160103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:51,383 DEBUG Processing 556/675 atomic regions from SNP 166682 to 167282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:51,520 DEBUG Processing 300/596 atomic regions from SNP 89784 to 90384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,567 DEBUG Processing 428/657 atomic regions from SNP 128360 to 128960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:51,631 DEBUG Processing 275/557 atomic regions from SNP 82435 to 83035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:51,667 DEBUG Processing 533/704 atomic regions from SNP 159803 to 160403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:51,669 DEBUG Processing 557/675 atomic regions from SNP 166982 to 167582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:51,799 DEBUG Processing 301/596 atomic regions from SNP 90084 to 90684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,859 DEBUG Processing 429/657 atomic regions from SNP 128660 to 129260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:51,896 DEBUG Processing 276/557 atomic regions from SNP 82735 to 83335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:51,958 DEBUG Processing 558/675 atomic regions from SNP 167282 to 167882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:51,973 DEBUG Processing 534/704 atomic regions from SNP 160103 to 160703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:52,097 DEBUG Processing 302/596 atomic regions from SNP 90384 to 90984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,145 DEBUG Processing 430/657 atomic regions from SNP 128960 to 129560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:52,159 DEBUG Processing 277/557 atomic regions from SNP 83035 to 83635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:52,247 DEBUG Processing 559/675 atomic regions from SNP 167582 to 168182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:52,302 DEBUG Processing 535/704 atomic regions from SNP 160403 to 161003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:52,364 DEBUG Processing 303/596 atomic regions from SNP 90684 to 91284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,431 DEBUG Processing 431/657 atomic regions from SNP 129260 to 129860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:52,434 DEBUG Processing 278/557 atomic regions from SNP 83335 to 83935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:52,529 DEBUG Processing 560/675 atomic regions from SNP 167882 to 168482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:52,618 DEBUG Processing 536/704 atomic regions from SNP 160703 to 161303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:52,634 DEBUG Processing 304/596 atomic regions from SNP 90984 to 91584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,720 DEBUG Processing 432/657 atomic regions from SNP 129560 to 130160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:52,730 DEBUG Processing 279/557 atomic regions from SNP 83635 to 84235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:52,816 DEBUG Processing 561/675 atomic regions from SNP 168182 to 168782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:52,901 DEBUG Processing 305/596 atomic regions from SNP 91284 to 91884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,925 DEBUG Processing 537/704 atomic regions from SNP 161003 to 161603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:52,997 DEBUG Processing 280/557 atomic regions from SNP 83935 to 84535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:53,012 DEBUG Processing 433/657 atomic regions from SNP 129860 to 130460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:53,132 DEBUG Processing 562/675 atomic regions from SNP 168482 to 169082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:53,170 DEBUG Processing 306/596 atomic regions from SNP 91584 to 92184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,220 DEBUG Processing 538/704 atomic regions from SNP 161303 to 161903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:53,259 DEBUG Processing 281/557 atomic regions from SNP 84235 to 84835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:53,298 DEBUG Processing 434/657 atomic regions from SNP 130160 to 130760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:53,441 DEBUG Processing 307/596 atomic regions from SNP 91884 to 92484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,444 DEBUG Processing 563/675 atomic regions from SNP 168782 to 169382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:53,521 DEBUG Processing 282/557 atomic regions from SNP 84535 to 85135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:53,527 DEBUG Processing 539/704 atomic regions from SNP 161603 to 162203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:53,584 DEBUG Processing 435/657 atomic regions from SNP 130460 to 131060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:53,712 DEBUG Processing 308/596 atomic regions from SNP 92184 to 92784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,731 DEBUG Processing 564/675 atomic regions from SNP 169082 to 169682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:53,783 DEBUG Processing 283/557 atomic regions from SNP 84835 to 85435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:53,857 DEBUG Processing 540/704 atomic regions from SNP 161903 to 162503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:53,871 DEBUG Processing 436/657 atomic regions from SNP 130760 to 131360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:53,982 DEBUG Processing 309/596 atomic regions from SNP 92484 to 93084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,019 DEBUG Processing 565/675 atomic regions from SNP 169382 to 169982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:54,042 DEBUG Processing 284/557 atomic regions from SNP 85135 to 85735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:54,161 DEBUG Processing 437/657 atomic regions from SNP 131060 to 131660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:54,171 DEBUG Processing 541/704 atomic regions from SNP 162203 to 162803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:54,251 DEBUG Processing 310/596 atomic regions from SNP 92784 to 93384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,306 DEBUG Processing 566/675 atomic regions from SNP 169682 to 170282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:54,307 DEBUG Processing 285/557 atomic regions from SNP 85435 to 86035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:54,449 DEBUG Processing 438/657 atomic regions from SNP 131360 to 131960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:54,493 DEBUG Processing 542/704 atomic regions from SNP 162503 to 163103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:54,519 DEBUG Processing 311/596 atomic regions from SNP 93084 to 93684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,571 DEBUG Processing 286/557 atomic regions from SNP 85735 to 86335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:54,591 DEBUG Processing 567/675 atomic regions from SNP 169982 to 170582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:54,738 DEBUG Processing 439/657 atomic regions from SNP 131660 to 132260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:54,788 DEBUG Processing 312/596 atomic regions from SNP 93384 to 93984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,793 DEBUG Processing 543/704 atomic regions from SNP 162803 to 163403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:54,835 DEBUG Processing 287/557 atomic regions from SNP 86035 to 86635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:54,891 DEBUG Processing 568/675 atomic regions from SNP 170282 to 170882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:55,025 DEBUG Processing 440/657 atomic regions from SNP 131960 to 132560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:55,058 DEBUG Processing 313/596 atomic regions from SNP 93684 to 94284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,099 DEBUG Processing 288/557 atomic regions from SNP 86335 to 86935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:55,115 DEBUG Processing 544/704 atomic regions from SNP 163103 to 163703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:55,194 DEBUG Processing 569/675 atomic regions from SNP 170582 to 171182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:55,313 DEBUG Processing 441/657 atomic regions from SNP 132260 to 132860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:55,327 DEBUG Processing 314/596 atomic regions from SNP 93984 to 94584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,366 DEBUG Processing 289/557 atomic regions from SNP 86635 to 87235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:55,439 DEBUG Processing 545/704 atomic regions from SNP 163403 to 164003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:55,476 DEBUG Processing 570/675 atomic regions from SNP 170882 to 171482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:55,598 DEBUG Processing 315/596 atomic regions from SNP 94284 to 94884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,622 DEBUG Processing 442/657 atomic regions from SNP 132560 to 133160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:55,630 DEBUG Processing 290/557 atomic regions from SNP 86935 to 87535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:55,753 DEBUG Processing 546/704 atomic regions from SNP 163703 to 164303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:55,757 DEBUG Processing 571/675 atomic regions from SNP 171182 to 171782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:55,869 DEBUG Processing 316/596 atomic regions from SNP 94584 to 95184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,897 DEBUG Processing 291/557 atomic regions from SNP 87235 to 87835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:55,927 DEBUG Processing 443/657 atomic regions from SNP 132860 to 133460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:56,041 DEBUG Processing 572/675 atomic regions from SNP 171482 to 172082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:56,056 DEBUG Processing 547/704 atomic regions from SNP 164003 to 164603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:56,140 DEBUG Processing 317/596 atomic regions from SNP 94884 to 95484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,168 DEBUG Processing 292/557 atomic regions from SNP 87535 to 88135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:56,241 DEBUG Processing 444/657 atomic regions from SNP 133160 to 133760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:56,326 DEBUG Processing 573/675 atomic regions from SNP 171782 to 172382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:56,349 DEBUG Processing 548/704 atomic regions from SNP 164303 to 164903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:56,438 DEBUG Processing 293/557 atomic regions from SNP 87835 to 88435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:56,441 DEBUG Processing 318/596 atomic regions from SNP 95184 to 95784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,564 DEBUG Processing 445/657 atomic regions from SNP 133460 to 134060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:56,623 DEBUG Processing 574/675 atomic regions from SNP 172082 to 172682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:56,644 DEBUG Processing 549/704 atomic regions from SNP 164603 to 165203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:56,705 DEBUG Processing 294/557 atomic regions from SNP 88135 to 88735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:56,739 DEBUG Processing 319/596 atomic regions from SNP 95484 to 96084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,874 DEBUG Processing 446/657 atomic regions from SNP 133760 to 134360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:56,906 DEBUG Processing 575/675 atomic regions from SNP 172382 to 172982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:56,938 DEBUG Processing 550/704 atomic regions from SNP 164903 to 165503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:56,967 DEBUG Processing 295/557 atomic regions from SNP 88435 to 89035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:57,028 DEBUG Processing 320/596 atomic regions from SNP 95784 to 96384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,171 DEBUG Processing 447/657 atomic regions from SNP 134060 to 134660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:57,189 DEBUG Processing 576/675 atomic regions from SNP 172682 to 173282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:57,233 DEBUG Processing 296/557 atomic regions from SNP 88735 to 89335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:57,261 DEBUG Processing 551/704 atomic regions from SNP 165203 to 165803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:57,297 DEBUG Processing 321/596 atomic regions from SNP 96084 to 96684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,476 DEBUG Processing 577/675 atomic regions from SNP 172982 to 173582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:57,476 DEBUG Processing 448/657 atomic regions from SNP 134360 to 134960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:57,498 DEBUG Processing 297/557 atomic regions from SNP 89035 to 89635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:57,574 DEBUG Processing 322/596 atomic regions from SNP 96384 to 96984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,596 DEBUG Processing 552/704 atomic regions from SNP 165503 to 166103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:57,763 DEBUG Processing 298/557 atomic regions from SNP 89335 to 89935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:57,764 DEBUG Processing 578/675 atomic regions from SNP 173282 to 173882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:57,802 DEBUG Processing 449/657 atomic regions from SNP 134660 to 135260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:57,825 DEBUG Segmenting atomic regions: 2025-01-31 09:58:57,859 DEBUG Processing 323/596 atomic regions from SNP 96684 to 97284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,892 DEBUG Processing 1/528 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,928 DEBUG Processing 553/704 atomic regions from SNP 165803 to 166403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:58,031 DEBUG Processing 299/557 atomic regions from SNP 89635 to 90235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:58,051 DEBUG Processing 579/675 atomic regions from SNP 173582 to 174182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:58,125 DEBUG Processing 450/657 atomic regions from SNP 134960 to 135560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:58,159 DEBUG Processing 2/528 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,162 DEBUG Processing 324/596 atomic regions from SNP 96984 to 97584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,257 DEBUG Processing 554/704 atomic regions from SNP 166103 to 166703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:58,299 DEBUG Processing 300/557 atomic regions from SNP 89935 to 90535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:58,338 DEBUG Processing 580/675 atomic regions from SNP 173882 to 174482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:58,422 DEBUG Processing 3/528 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,446 DEBUG Processing 451/657 atomic regions from SNP 135260 to 135860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:58,469 DEBUG Processing 325/596 atomic regions from SNP 97284 to 97884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,567 DEBUG Processing 301/557 atomic regions from SNP 90235 to 90835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:58,587 DEBUG Processing 555/704 atomic regions from SNP 166403 to 167003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:58,632 DEBUG Processing 581/675 atomic regions from SNP 174182 to 174782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:58,686 DEBUG Processing 4/528 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,762 DEBUG Processing 326/596 atomic regions from SNP 97584 to 98184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,763 DEBUG Processing 452/657 atomic regions from SNP 135560 to 136160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:58,829 DEBUG Processing 302/557 atomic regions from SNP 90535 to 91135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:58,920 DEBUG Processing 556/704 atomic regions from SNP 166703 to 167303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:58,936 DEBUG Processing 582/675 atomic regions from SNP 174482 to 175082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:58,948 DEBUG Processing 5/528 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,046 DEBUG Processing 327/596 atomic regions from SNP 97884 to 98484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,083 DEBUG Processing 453/657 atomic regions from SNP 135860 to 136460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:59,092 DEBUG Processing 303/557 atomic regions from SNP 90835 to 91435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:59,212 DEBUG Processing 6/528 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,236 DEBUG Processing 583/675 atomic regions from SNP 174782 to 175382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:59,256 DEBUG Processing 557/704 atomic regions from SNP 167003 to 167603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:59,324 DEBUG Processing 328/596 atomic regions from SNP 98184 to 98784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,357 DEBUG Processing 304/557 atomic regions from SNP 91135 to 91735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:59,390 DEBUG Processing 454/657 atomic regions from SNP 136160 to 136760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:59,473 DEBUG Processing 7/528 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,523 DEBUG Processing 584/675 atomic regions from SNP 175082 to 175682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:59,585 DEBUG Processing 558/704 atomic regions from SNP 167303 to 167903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:59,598 DEBUG Processing 329/596 atomic regions from SNP 98484 to 99084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,621 DEBUG Processing 305/557 atomic regions from SNP 91435 to 92035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:59,709 DEBUG Processing 455/657 atomic regions from SNP 136460 to 137060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:59,735 DEBUG Processing 8/528 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,807 DEBUG Processing 585/675 atomic regions from SNP 175382 to 175982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:59,874 DEBUG Processing 330/596 atomic regions from SNP 98784 to 99384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,884 DEBUG Processing 306/557 atomic regions from SNP 91735 to 92335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:59,910 DEBUG Processing 559/704 atomic regions from SNP 167603 to 168203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:59,997 DEBUG Processing 9/528 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,019 DEBUG Processing 456/657 atomic regions from SNP 136760 to 137360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:00,095 DEBUG Processing 586/675 atomic regions from SNP 175682 to 176282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:00,148 DEBUG Processing 331/596 atomic regions from SNP 99084 to 99684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,150 DEBUG Processing 307/557 atomic regions from SNP 92035 to 92635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:00,219 DEBUG Processing 560/704 atomic regions from SNP 167903 to 168503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:00,259 DEBUG Processing 10/528 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,325 DEBUG Processing 457/657 atomic regions from SNP 137060 to 137660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:00,389 DEBUG Processing 587/675 atomic regions from SNP 175982 to 176582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:00,415 DEBUG Processing 308/557 atomic regions from SNP 92335 to 92935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:00,422 DEBUG Processing 332/596 atomic regions from SNP 99384 to 99984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,522 DEBUG Processing 11/528 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,548 DEBUG Processing 561/704 atomic regions from SNP 168203 to 168803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:00,615 DEBUG Processing 458/657 atomic regions from SNP 137360 to 137960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:00,677 DEBUG Processing 588/675 atomic regions from SNP 176282 to 176882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:00,682 DEBUG Processing 309/557 atomic regions from SNP 92635 to 93235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:00,698 DEBUG Processing 333/596 atomic regions from SNP 99684 to 100284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,784 DEBUG Processing 12/528 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,876 DEBUG Processing 562/704 atomic regions from SNP 168503 to 169103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:00,903 DEBUG Processing 459/657 atomic regions from SNP 137660 to 138260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:00,950 DEBUG Processing 310/557 atomic regions from SNP 92935 to 93535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:00,964 DEBUG Processing 589/675 atomic regions from SNP 176582 to 177182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:00,971 DEBUG Processing 334/596 atomic regions from SNP 99984 to 100584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,068 DEBUG Processing 13/528 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,200 DEBUG Processing 460/657 atomic regions from SNP 137960 to 138560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:01,210 DEBUG Processing 563/704 atomic regions from SNP 168803 to 169403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:01,219 DEBUG Processing 311/557 atomic regions from SNP 93235 to 93835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:01,246 DEBUG Processing 335/596 atomic regions from SNP 100284 to 100884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,252 DEBUG Processing 590/675 atomic regions from SNP 176882 to 177482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:01,344 DEBUG Processing 14/528 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,493 DEBUG Processing 461/657 atomic regions from SNP 138260 to 138860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:01,503 DEBUG Processing 312/557 atomic regions from SNP 93535 to 94135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:01,522 DEBUG Processing 336/596 atomic regions from SNP 100584 to 101184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,541 DEBUG Processing 591/675 atomic regions from SNP 177182 to 177782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:01,546 DEBUG Processing 564/704 atomic regions from SNP 169103 to 169703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:01,611 DEBUG Processing 15/528 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,789 DEBUG Processing 462/657 atomic regions from SNP 138560 to 139160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:01,805 DEBUG Processing 337/596 atomic regions from SNP 100884 to 101484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,806 DEBUG Processing 313/557 atomic regions from SNP 93835 to 94435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:01,832 DEBUG Processing 592/675 atomic regions from SNP 177482 to 178082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:01,874 DEBUG Processing 565/704 atomic regions from SNP 169403 to 170003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:01,890 DEBUG Processing 16/528 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,085 DEBUG Processing 463/657 atomic regions from SNP 138860 to 139460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:02,085 DEBUG Processing 338/596 atomic regions from SNP 101184 to 101784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,093 DEBUG Processing 314/557 atomic regions from SNP 94135 to 94735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:02,123 DEBUG Processing 593/675 atomic regions from SNP 177782 to 178382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:02,154 DEBUG Processing 17/528 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,175 DEBUG Processing 566/704 atomic regions from SNP 169703 to 170303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:02,363 DEBUG Processing 315/557 atomic regions from SNP 94435 to 95035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:02,363 DEBUG Processing 339/596 atomic regions from SNP 101484 to 102084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,379 DEBUG Processing 464/657 atomic regions from SNP 139160 to 139760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:02,412 DEBUG Processing 594/675 atomic regions from SNP 178082 to 178682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:02,430 DEBUG Processing 18/528 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,474 DEBUG Processing 567/704 atomic regions from SNP 170003 to 170603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:02,634 DEBUG Processing 316/557 atomic regions from SNP 94735 to 95335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:02,642 DEBUG Processing 340/596 atomic regions from SNP 101784 to 102384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,692 DEBUG Processing 465/657 atomic regions from SNP 139460 to 140060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:02,700 DEBUG Processing 595/675 atomic regions from SNP 178382 to 178982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:02,708 DEBUG Processing 19/528 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,771 DEBUG Processing 568/704 atomic regions from SNP 170303 to 170903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:02,901 DEBUG Processing 317/557 atomic regions from SNP 95035 to 95635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:02,916 DEBUG Processing 341/596 atomic regions from SNP 102084 to 102684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,973 DEBUG Processing 20/528 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,988 DEBUG Processing 596/675 atomic regions from SNP 178682 to 179282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:03,017 DEBUG Processing 466/657 atomic regions from SNP 139760 to 140360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:03,070 DEBUG Processing 569/704 atomic regions from SNP 170603 to 171203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:03,167 DEBUG Processing 318/557 atomic regions from SNP 95335 to 95935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:03,191 DEBUG Processing 342/596 atomic regions from SNP 102384 to 102984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,243 DEBUG Processing 21/528 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,275 DEBUG Processing 597/675 atomic regions from SNP 178982 to 179582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:03,338 DEBUG Processing 467/657 atomic regions from SNP 140060 to 140660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:03,368 DEBUG Processing 570/704 atomic regions from SNP 170903 to 171503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:03,430 DEBUG Processing 319/557 atomic regions from SNP 95635 to 96235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:03,464 DEBUG Processing 343/596 atomic regions from SNP 102684 to 103284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,532 DEBUG Processing 22/528 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,561 DEBUG Processing 598/675 atomic regions from SNP 179282 to 179882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:03,660 DEBUG Processing 468/657 atomic regions from SNP 140360 to 140960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:03,671 DEBUG Processing 571/704 atomic regions from SNP 171203 to 171803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:03,695 DEBUG Processing 320/557 atomic regions from SNP 95935 to 96535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:03,735 DEBUG Processing 344/596 atomic regions from SNP 102984 to 103584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,795 DEBUG Processing 23/528 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,859 DEBUG Processing 599/675 atomic regions from SNP 179582 to 180182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:03,963 DEBUG Processing 321/557 atomic regions from SNP 96235 to 96835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:03,969 DEBUG Processing 469/657 atomic regions from SNP 140660 to 141260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:03,989 DEBUG Processing 572/704 atomic regions from SNP 171503 to 172103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:04,008 DEBUG Processing 345/596 atomic regions from SNP 103284 to 103884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:04,056 DEBUG Processing 24/528 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,172 DEBUG Processing 600/675 atomic regions from SNP 179882 to 180482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:04,231 DEBUG Processing 322/557 atomic regions from SNP 96535 to 97135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:04,278 DEBUG Processing 470/657 atomic regions from SNP 140960 to 141560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:04,282 DEBUG Processing 346/596 atomic regions from SNP 103584 to 104184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:04,317 DEBUG Processing 25/528 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,320 DEBUG Processing 573/704 atomic regions from SNP 171803 to 172403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:04,457 DEBUG Processing 601/675 atomic regions from SNP 180182 to 180782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:04,495 DEBUG Processing 323/557 atomic regions from SNP 96835 to 97435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:04,560 DEBUG Processing 347/596 atomic regions from SNP 103884 to 104484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:04,571 DEBUG Processing 471/657 atomic regions from SNP 141260 to 141860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:04,581 DEBUG Processing 26/528 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,641 DEBUG Processing 574/704 atomic regions from SNP 172103 to 172703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:04,743 DEBUG Processing 602/675 atomic regions from SNP 180482 to 181082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:04,759 DEBUG Processing 324/557 atomic regions from SNP 97135 to 97735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:04,837 DEBUG Processing 348/596 atomic regions from SNP 104184 to 104784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:04,850 DEBUG Processing 27/528 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,866 DEBUG Processing 472/657 atomic regions from SNP 141560 to 142160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:04,976 DEBUG Processing 575/704 atomic regions from SNP 172403 to 173003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:05,025 DEBUG Processing 325/557 atomic regions from SNP 97435 to 98035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:05,031 DEBUG Processing 603/675 atomic regions from SNP 180782 to 181382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:05,113 DEBUG Processing 349/596 atomic regions from SNP 104484 to 105084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:05,115 DEBUG Processing 28/528 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,158 DEBUG Processing 473/657 atomic regions from SNP 141860 to 142460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:05,294 DEBUG Processing 576/704 atomic regions from SNP 172703 to 173303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:05,295 DEBUG Processing 326/557 atomic regions from SNP 97735 to 98335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:05,320 DEBUG Processing 604/675 atomic regions from SNP 181082 to 181682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:05,379 DEBUG Processing 29/528 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,389 DEBUG Processing 350/596 atomic regions from SNP 104784 to 105384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:05,447 DEBUG Processing 474/657 atomic regions from SNP 142160 to 142760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:05,582 DEBUG Processing 327/557 atomic regions from SNP 98035 to 98635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:05,609 DEBUG Processing 605/675 atomic regions from SNP 181382 to 181982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:05,623 DEBUG Processing 577/704 atomic regions from SNP 173003 to 173603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:05,643 DEBUG Processing 30/528 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,662 DEBUG Processing 351/596 atomic regions from SNP 105084 to 105684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:05,737 DEBUG Processing 475/657 atomic regions from SNP 142460 to 143060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:05,867 DEBUG Processing 328/557 atomic regions from SNP 98335 to 98935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:05,907 DEBUG Processing 606/675 atomic regions from SNP 181682 to 182282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:05,909 DEBUG Processing 31/528 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,934 DEBUG Processing 352/596 atomic regions from SNP 105384 to 105984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:05,958 DEBUG Processing 578/704 atomic regions from SNP 173303 to 173903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:06,026 DEBUG Processing 476/657 atomic regions from SNP 142760 to 143360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:06,135 DEBUG Processing 329/557 atomic regions from SNP 98635 to 99235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:06,175 DEBUG Processing 32/528 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,202 DEBUG Processing 607/675 atomic regions from SNP 181982 to 182582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:06,208 DEBUG Processing 353/596 atomic regions from SNP 105684 to 106284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:06,287 DEBUG Processing 579/704 atomic regions from SNP 173603 to 174203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:06,316 DEBUG Processing 477/657 atomic regions from SNP 143060 to 143660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:06,402 DEBUG Processing 330/557 atomic regions from SNP 98935 to 99535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:06,440 DEBUG Processing 33/528 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,481 DEBUG Processing 354/596 atomic regions from SNP 105984 to 106584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:06,495 DEBUG Processing 608/675 atomic regions from SNP 182282 to 182882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:06,612 DEBUG Processing 478/657 atomic regions from SNP 143360 to 143960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:06,619 DEBUG Processing 580/704 atomic regions from SNP 173903 to 174503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:06,666 DEBUG Processing 331/557 atomic regions from SNP 99235 to 99835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:06,703 DEBUG Processing 34/528 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,759 DEBUG Processing 355/596 atomic regions from SNP 106284 to 106884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:06,781 DEBUG Processing 609/675 atomic regions from SNP 182582 to 183182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:06,906 DEBUG Processing 479/657 atomic regions from SNP 143660 to 144260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:06,931 DEBUG Processing 332/557 atomic regions from SNP 99535 to 100135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:06,947 DEBUG Processing 581/704 atomic regions from SNP 174203 to 174803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:06,966 DEBUG Processing 35/528 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,052 DEBUG Processing 356/596 atomic regions from SNP 106584 to 107184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:07,067 DEBUG Processing 610/675 atomic regions from SNP 182882 to 183482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:07,199 DEBUG Processing 333/557 atomic regions from SNP 99835 to 100435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:07,201 DEBUG Processing 480/657 atomic regions from SNP 143960 to 144560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:07,232 DEBUG Processing 36/528 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,255 DEBUG Processing 582/704 atomic regions from SNP 174503 to 175103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:07,332 DEBUG Processing 357/596 atomic regions from SNP 106884 to 107484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:07,353 DEBUG Processing 611/675 atomic regions from SNP 183182 to 183782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:07,467 DEBUG Processing 334/557 atomic regions from SNP 100135 to 100735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:07,495 DEBUG Processing 481/657 atomic regions from SNP 144260 to 144860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:07,496 DEBUG Processing 37/528 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,572 DEBUG Processing 583/704 atomic regions from SNP 174803 to 175403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:07,607 DEBUG Processing 358/596 atomic regions from SNP 107184 to 107784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:07,639 DEBUG Processing 612/675 atomic regions from SNP 183482 to 184082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:07,733 DEBUG Processing 335/557 atomic regions from SNP 100435 to 101035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:07,760 DEBUG Processing 38/528 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,786 DEBUG Processing 482/657 atomic regions from SNP 144560 to 145160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:07,878 DEBUG Processing 359/596 atomic regions from SNP 107484 to 108084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:07,904 DEBUG Processing 584/704 atomic regions from SNP 175103 to 175703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:07,924 DEBUG Processing 613/675 atomic regions from SNP 183782 to 184382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:07,996 DEBUG Processing 336/557 atomic regions from SNP 100735 to 101335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:08,022 DEBUG Processing 39/528 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,076 DEBUG Processing 483/657 atomic regions from SNP 144860 to 145460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:08,148 DEBUG Processing 360/596 atomic regions from SNP 107784 to 108384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:08,212 DEBUG Processing 614/675 atomic regions from SNP 184082 to 184682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:08,235 DEBUG Processing 585/704 atomic regions from SNP 175403 to 176003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:08,262 DEBUG Processing 337/557 atomic regions from SNP 101035 to 101635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:08,282 DEBUG Processing 40/528 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,364 DEBUG Processing 484/657 atomic regions from SNP 145160 to 145760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:08,417 DEBUG Processing 361/596 atomic regions from SNP 108084 to 108684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:08,501 DEBUG Processing 615/675 atomic regions from SNP 184382 to 184982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:08,529 DEBUG Processing 338/557 atomic regions from SNP 101335 to 101935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:08,547 DEBUG Processing 41/528 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,570 DEBUG Processing 586/704 atomic regions from SNP 175703 to 176303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:08,651 DEBUG Processing 485/657 atomic regions from SNP 145460 to 146060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:08,685 DEBUG Processing 362/596 atomic regions from SNP 108384 to 108984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:08,799 DEBUG Processing 339/557 atomic regions from SNP 101635 to 102235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:08,810 DEBUG Processing 616/675 atomic regions from SNP 184682 to 185282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:08,812 DEBUG Processing 42/528 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,883 DEBUG Processing 587/704 atomic regions from SNP 176003 to 176603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:08,942 DEBUG Processing 486/657 atomic regions from SNP 145760 to 146360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:08,956 DEBUG Processing 363/596 atomic regions from SNP 108684 to 109284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:09,067 DEBUG Processing 340/557 atomic regions from SNP 101935 to 102535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:09,076 DEBUG Processing 43/528 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,122 DEBUG Processing 617/675 atomic regions from SNP 184982 to 185582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:09,183 DEBUG Processing 588/704 atomic regions from SNP 176303 to 176903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:09,227 DEBUG Processing 364/596 atomic regions from SNP 108984 to 109584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:09,231 DEBUG Processing 487/657 atomic regions from SNP 146060 to 146660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:09,335 DEBUG Processing 341/557 atomic regions from SNP 102235 to 102835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:09,341 DEBUG Processing 44/528 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,421 DEBUG Processing 618/675 atomic regions from SNP 185282 to 185882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:09,497 DEBUG Processing 589/704 atomic regions from SNP 176603 to 177203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:09,498 DEBUG Processing 365/596 atomic regions from SNP 109284 to 109884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:09,521 DEBUG Processing 488/657 atomic regions from SNP 146360 to 146960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:09,605 DEBUG Processing 342/557 atomic regions from SNP 102535 to 103135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:09,605 DEBUG Processing 45/528 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,707 DEBUG Processing 619/675 atomic regions from SNP 185582 to 186182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:09,773 DEBUG Processing 366/596 atomic regions from SNP 109584 to 110184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:09,816 DEBUG Processing 489/657 atomic regions from SNP 146660 to 147260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:09,828 DEBUG Processing 590/704 atomic regions from SNP 176903 to 177503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:09,869 DEBUG Processing 46/528 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,873 DEBUG Processing 343/557 atomic regions from SNP 102835 to 103435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:09,995 DEBUG Processing 620/675 atomic regions from SNP 185882 to 186482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:10,042 DEBUG Processing 367/596 atomic regions from SNP 109884 to 110484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:10,106 DEBUG Processing 490/657 atomic regions from SNP 146960 to 147560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:10,131 DEBUG Processing 47/528 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,138 DEBUG Processing 344/557 atomic regions from SNP 103135 to 103735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:10,147 DEBUG Processing 591/704 atomic regions from SNP 177203 to 177803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:10,281 DEBUG Processing 621/675 atomic regions from SNP 186182 to 186782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:10,310 DEBUG Processing 368/596 atomic regions from SNP 110184 to 110784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:10,396 DEBUG Processing 48/528 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,408 DEBUG Processing 345/557 atomic regions from SNP 103435 to 104035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:10,425 DEBUG Processing 491/657 atomic regions from SNP 147260 to 147860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:10,451 DEBUG Processing 592/704 atomic regions from SNP 177503 to 178103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:10,569 DEBUG Processing 622/675 atomic regions from SNP 186482 to 187082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:10,583 DEBUG Processing 369/596 atomic regions from SNP 110484 to 111084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:10,658 DEBUG Processing 49/528 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,677 DEBUG Processing 346/557 atomic regions from SNP 103735 to 104335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:10,745 DEBUG Processing 492/657 atomic regions from SNP 147560 to 148160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:10,752 DEBUG Processing 593/704 atomic regions from SNP 177803 to 178403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:10,854 DEBUG Processing 623/675 atomic regions from SNP 186782 to 187382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:10,858 DEBUG Processing 370/596 atomic regions from SNP 110784 to 111384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:10,920 DEBUG Processing 50/528 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,944 DEBUG Processing 347/557 atomic regions from SNP 104035 to 104635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:11,037 DEBUG Processing 493/657 atomic regions from SNP 147860 to 148460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:11,051 DEBUG Processing 594/704 atomic regions from SNP 178103 to 178703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:11,141 DEBUG Processing 624/675 atomic regions from SNP 187082 to 187682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:11,152 DEBUG Processing 371/596 atomic regions from SNP 111084 to 111684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:11,188 DEBUG Processing 51/528 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,209 DEBUG Processing 348/557 atomic regions from SNP 104335 to 104935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:11,330 DEBUG Processing 494/657 atomic regions from SNP 148160 to 148760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:11,350 DEBUG Processing 595/704 atomic regions from SNP 178403 to 179003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:11,431 DEBUG Processing 625/675 atomic regions from SNP 187382 to 187982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:11,439 DEBUG Processing 372/596 atomic regions from SNP 111384 to 111984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:11,472 DEBUG Processing 52/528 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,477 DEBUG Processing 349/557 atomic regions from SNP 104635 to 105235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:11,622 DEBUG Processing 495/657 atomic regions from SNP 148460 to 149060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:11,648 DEBUG Processing 596/704 atomic regions from SNP 178703 to 179303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:11,721 DEBUG Processing 626/675 atomic regions from SNP 187682 to 188282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:11,738 DEBUG Processing 53/528 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,746 DEBUG Processing 373/596 atomic regions from SNP 111684 to 112284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:11,746 DEBUG Processing 350/557 atomic regions from SNP 104935 to 105535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:11,915 DEBUG Processing 496/657 atomic regions from SNP 148760 to 149360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:11,944 DEBUG Processing 597/704 atomic regions from SNP 179003 to 179603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:12,006 DEBUG Processing 54/528 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,017 DEBUG Processing 351/557 atomic regions from SNP 105235 to 105835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:12,023 DEBUG Processing 374/596 atomic regions from SNP 111984 to 112584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:12,025 DEBUG Processing 627/675 atomic regions from SNP 187982 to 188582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:12,209 DEBUG Processing 497/657 atomic regions from SNP 149060 to 149660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:12,242 DEBUG Processing 598/704 atomic regions from SNP 179303 to 179903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:12,270 DEBUG Processing 55/528 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,285 DEBUG Processing 352/557 atomic regions from SNP 105535 to 106135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:12,298 DEBUG Processing 375/596 atomic regions from SNP 112284 to 112884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:12,341 DEBUG Processing 628/675 atomic regions from SNP 188282 to 188882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:12,505 DEBUG Processing 498/657 atomic regions from SNP 149360 to 149960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:12,546 DEBUG Processing 599/704 atomic regions from SNP 179603 to 180203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:12,550 DEBUG Processing 56/528 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,556 DEBUG Processing 353/557 atomic regions from SNP 105835 to 106435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:12,572 DEBUG Processing 376/596 atomic regions from SNP 112584 to 113184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:12,668 DEBUG Processing 629/675 atomic regions from SNP 188582 to 189182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:12,799 DEBUG Processing 499/657 atomic regions from SNP 149660 to 150260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:12,827 DEBUG Processing 354/557 atomic regions from SNP 106135 to 106735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:12,830 DEBUG Processing 57/528 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,847 DEBUG Processing 377/596 atomic regions from SNP 112884 to 113484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:12,848 DEBUG Processing 600/704 atomic regions from SNP 179903 to 180503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:12,979 DEBUG Processing 630/675 atomic regions from SNP 188882 to 189482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:13,096 DEBUG Processing 500/657 atomic regions from SNP 149960 to 150560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:13,099 DEBUG Processing 58/528 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,101 DEBUG Processing 355/557 atomic regions from SNP 106435 to 107035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:13,123 DEBUG Processing 378/596 atomic regions from SNP 113184 to 113784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:13,148 DEBUG Processing 601/704 atomic regions from SNP 180203 to 180803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:13,268 DEBUG Processing 631/675 atomic regions from SNP 189182 to 189782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:13,369 DEBUG Processing 59/528 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,376 DEBUG Processing 356/557 atomic regions from SNP 106735 to 107335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:13,393 DEBUG Processing 501/657 atomic regions from SNP 150260 to 150860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:13,402 DEBUG Processing 379/596 atomic regions from SNP 113484 to 114084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:13,446 DEBUG Processing 602/704 atomic regions from SNP 180503 to 181103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:13,556 DEBUG Processing 632/675 atomic regions from SNP 189482 to 190082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:13,634 DEBUG Processing 60/528 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,644 DEBUG Processing 357/557 atomic regions from SNP 107035 to 107635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:13,677 DEBUG Processing 380/596 atomic regions from SNP 113784 to 114384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:13,688 DEBUG Processing 502/657 atomic regions from SNP 150560 to 151160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:13,762 DEBUG Processing 603/704 atomic regions from SNP 180803 to 181403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:13,852 DEBUG Processing 633/675 atomic regions from SNP 189782 to 190382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:13,898 DEBUG Processing 61/528 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,911 DEBUG Processing 358/557 atomic regions from SNP 107335 to 107935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:13,949 DEBUG Processing 381/596 atomic regions from SNP 114084 to 114684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:13,980 DEBUG Processing 503/657 atomic regions from SNP 150860 to 151460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:14,088 DEBUG Processing 604/704 atomic regions from SNP 181103 to 181703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:14,153 DEBUG Processing 634/675 atomic regions from SNP 190082 to 190682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:14,160 DEBUG Processing 62/528 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,176 DEBUG Processing 359/557 atomic regions from SNP 107635 to 108235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:14,218 DEBUG Processing 382/596 atomic regions from SNP 114384 to 114984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:14,271 DEBUG Processing 504/657 atomic regions from SNP 151160 to 151760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:14,396 DEBUG Processing 605/704 atomic regions from SNP 181403 to 182003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:14,424 DEBUG Processing 63/528 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,446 DEBUG Processing 360/557 atomic regions from SNP 107935 to 108535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:14,470 DEBUG Processing 635/675 atomic regions from SNP 190382 to 190982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:14,488 DEBUG Processing 383/596 atomic regions from SNP 114684 to 115284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:14,558 DEBUG Processing 505/657 atomic regions from SNP 151460 to 152060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:14,691 DEBUG Processing 64/528 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,696 DEBUG Processing 606/704 atomic regions from SNP 181703 to 182303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:14,715 DEBUG Processing 361/557 atomic regions from SNP 108235 to 108835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:14,761 DEBUG Processing 384/596 atomic regions from SNP 114984 to 115584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:14,771 DEBUG Processing 636/675 atomic regions from SNP 190682 to 191282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:14,844 DEBUG Processing 506/657 atomic regions from SNP 151760 to 152360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:14,956 DEBUG Processing 65/528 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,986 DEBUG Processing 362/557 atomic regions from SNP 108535 to 109135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:14,994 DEBUG Processing 607/704 atomic regions from SNP 182003 to 182603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:15,032 DEBUG Processing 385/596 atomic regions from SNP 115284 to 115884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:15,057 DEBUG Processing 637/675 atomic regions from SNP 190982 to 191582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:15,133 DEBUG Processing 507/657 atomic regions from SNP 152060 to 152660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:15,223 DEBUG Processing 66/528 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,256 DEBUG Processing 363/557 atomic regions from SNP 108835 to 109435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:15,303 DEBUG Processing 386/596 atomic regions from SNP 115584 to 116184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:15,309 DEBUG Processing 608/704 atomic regions from SNP 182303 to 182903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:15,343 DEBUG Processing 638/675 atomic regions from SNP 191282 to 191882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:15,426 DEBUG Processing 508/657 atomic regions from SNP 152360 to 152960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:15,482 DEBUG Processing 67/528 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,523 DEBUG Processing 364/557 atomic regions from SNP 109135 to 109735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:15,576 DEBUG Processing 387/596 atomic regions from SNP 115884 to 116484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:15,627 DEBUG Processing 609/704 atomic regions from SNP 182603 to 183203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:15,629 DEBUG Processing 639/675 atomic regions from SNP 191582 to 192182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:15,714 DEBUG Processing 509/657 atomic regions from SNP 152660 to 153260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:15,744 DEBUG Processing 68/528 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,787 DEBUG Processing 365/557 atomic regions from SNP 109435 to 110035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:15,847 DEBUG Processing 388/596 atomic regions from SNP 116184 to 116784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:15,916 DEBUG Processing 640/675 atomic regions from SNP 191882 to 192482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:15,947 DEBUG Processing 610/704 atomic regions from SNP 182903 to 183503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:16,003 DEBUG Processing 510/657 atomic regions from SNP 152960 to 153560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:16,010 DEBUG Processing 69/528 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,052 DEBUG Processing 366/557 atomic regions from SNP 109735 to 110335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:16,117 DEBUG Processing 389/596 atomic regions from SNP 116484 to 117084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:16,225 DEBUG Processing 641/675 atomic regions from SNP 192182 to 192782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:16,266 DEBUG Processing 611/704 atomic regions from SNP 183203 to 183803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:16,275 DEBUG Processing 70/528 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,294 DEBUG Processing 511/657 atomic regions from SNP 153260 to 153860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:16,318 DEBUG Processing 367/557 atomic regions from SNP 110035 to 110635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:16,386 DEBUG Processing 390/596 atomic regions from SNP 116784 to 117384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:16,514 DEBUG Processing 642/675 atomic regions from SNP 192482 to 193082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:16,541 DEBUG Processing 71/528 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,586 DEBUG Processing 368/557 atomic regions from SNP 110335 to 110935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:16,589 DEBUG Processing 512/657 atomic regions from SNP 153560 to 154160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:16,591 DEBUG Processing 612/704 atomic regions from SNP 183503 to 184103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:16,652 DEBUG Processing 391/596 atomic regions from SNP 117084 to 117684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:16,800 DEBUG Processing 643/675 atomic regions from SNP 192782 to 193382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:16,802 DEBUG Processing 72/528 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,856 DEBUG Processing 369/557 atomic regions from SNP 110635 to 111235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:16,882 DEBUG Processing 513/657 atomic regions from SNP 153860 to 154460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:16,916 DEBUG Processing 613/704 atomic regions from SNP 183803 to 184403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:16,922 DEBUG Processing 392/596 atomic regions from SNP 117384 to 117984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:17,064 DEBUG Processing 73/528 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,087 DEBUG Processing 644/675 atomic regions from SNP 193082 to 193682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:17,122 DEBUG Processing 370/557 atomic regions from SNP 110935 to 111535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:17,175 DEBUG Processing 514/657 atomic regions from SNP 154160 to 154760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:17,194 DEBUG Processing 393/596 atomic regions from SNP 117684 to 118284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:17,242 DEBUG Processing 614/704 atomic regions from SNP 184103 to 184703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:17,324 DEBUG Processing 74/528 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,372 DEBUG Processing 645/675 atomic regions from SNP 193382 to 193982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:17,387 DEBUG Processing 371/557 atomic regions from SNP 111235 to 111835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:17,463 DEBUG Processing 394/596 atomic regions from SNP 117984 to 118584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:17,466 DEBUG Processing 515/657 atomic regions from SNP 154460 to 155060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:17,551 DEBUG Processing 615/704 atomic regions from SNP 184403 to 185003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:17,587 DEBUG Processing 75/528 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,654 DEBUG Processing 372/557 atomic regions from SNP 111535 to 112135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:17,659 DEBUG Processing 646/675 atomic regions from SNP 193682 to 194282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:17,734 DEBUG Processing 395/596 atomic regions from SNP 118284 to 118884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:17,757 DEBUG Processing 516/657 atomic regions from SNP 154760 to 155360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:17,850 DEBUG Processing 616/704 atomic regions from SNP 184703 to 185303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:17,852 DEBUG Processing 76/528 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,922 DEBUG Processing 373/557 atomic regions from SNP 111835 to 112435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:17,949 DEBUG Processing 647/675 atomic regions from SNP 193982 to 194582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:18,003 DEBUG Processing 396/596 atomic regions from SNP 118584 to 119184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:18,047 DEBUG Processing 517/657 atomic regions from SNP 155060 to 155660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:18,117 DEBUG Processing 77/528 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,175 DEBUG Processing 617/704 atomic regions from SNP 185003 to 185603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:18,189 DEBUG Processing 374/557 atomic regions from SNP 112135 to 112735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:18,238 DEBUG Processing 648/675 atomic regions from SNP 194282 to 194882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:18,269 DEBUG Processing 397/596 atomic regions from SNP 118884 to 119484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:18,334 DEBUG Processing 518/657 atomic regions from SNP 155360 to 155960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:18,376 DEBUG Processing 78/528 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,459 DEBUG Processing 375/557 atomic regions from SNP 112435 to 113035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:18,473 DEBUG Processing 618/704 atomic regions from SNP 185303 to 185903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:18,526 DEBUG Processing 649/675 atomic regions from SNP 194582 to 195182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:18,538 DEBUG Processing 398/596 atomic regions from SNP 119184 to 119784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:18,624 DEBUG Processing 519/657 atomic regions from SNP 155660 to 156260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:18,637 DEBUG Processing 79/528 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,729 DEBUG Processing 376/557 atomic regions from SNP 112735 to 113335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:18,773 DEBUG Processing 619/704 atomic regions from SNP 185603 to 186203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:18,810 DEBUG Processing 399/596 atomic regions from SNP 119484 to 120084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:18,814 DEBUG Processing 650/675 atomic regions from SNP 194882 to 195482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:18,901 DEBUG Processing 80/528 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,914 DEBUG Processing 520/657 atomic regions from SNP 155960 to 156560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:18,997 DEBUG Processing 377/557 atomic regions from SNP 113035 to 113635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:19,073 DEBUG Processing 620/704 atomic regions from SNP 185903 to 186503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:19,085 DEBUG Processing 400/596 atomic regions from SNP 119784 to 120384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:19,102 DEBUG Processing 651/675 atomic regions from SNP 195182 to 195782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:19,165 DEBUG Processing 81/528 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,205 DEBUG Processing 521/657 atomic regions from SNP 156260 to 156860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:19,262 DEBUG Processing 378/557 atomic regions from SNP 113335 to 113935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:19,363 DEBUG Processing 401/596 atomic regions from SNP 120084 to 120684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:19,374 DEBUG Processing 621/704 atomic regions from SNP 186203 to 186803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:19,392 DEBUG Processing 652/675 atomic regions from SNP 195482 to 196082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:19,428 DEBUG Processing 82/528 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,498 DEBUG Processing 522/657 atomic regions from SNP 156560 to 157160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:19,523 DEBUG Processing 379/557 atomic regions from SNP 113635 to 114235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:19,638 DEBUG Processing 402/596 atomic regions from SNP 120384 to 120984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:19,682 DEBUG Processing 653/675 atomic regions from SNP 195782 to 196382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:19,688 DEBUG Processing 622/704 atomic regions from SNP 186503 to 187103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:19,689 DEBUG Processing 83/528 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,787 DEBUG Processing 380/557 atomic regions from SNP 113935 to 114535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:19,790 DEBUG Processing 523/657 atomic regions from SNP 156860 to 157460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:19,914 DEBUG Processing 403/596 atomic regions from SNP 120684 to 121284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:19,956 DEBUG Processing 84/528 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,973 DEBUG Processing 654/675 atomic regions from SNP 196082 to 196682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:19,987 DEBUG Processing 623/704 atomic regions from SNP 186803 to 187403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:20,055 DEBUG Processing 381/557 atomic regions from SNP 114235 to 114835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:20,080 DEBUG Processing 524/657 atomic regions from SNP 157160 to 157760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:20,189 DEBUG Processing 404/596 atomic regions from SNP 120984 to 121584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:20,220 DEBUG Processing 85/528 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,263 DEBUG Processing 655/675 atomic regions from SNP 196382 to 196982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:20,287 DEBUG Processing 624/704 atomic regions from SNP 187103 to 187703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:20,319 DEBUG Processing 382/557 atomic regions from SNP 114535 to 115135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:20,369 DEBUG Processing 525/657 atomic regions from SNP 157460 to 158060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:20,460 DEBUG Processing 405/596 atomic regions from SNP 121284 to 121884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:20,482 DEBUG Processing 86/528 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,551 DEBUG Processing 656/675 atomic regions from SNP 196682 to 197282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:20,586 DEBUG Processing 383/557 atomic regions from SNP 114835 to 115435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:20,587 DEBUG Processing 625/704 atomic regions from SNP 187403 to 188003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:20,659 DEBUG Processing 526/657 atomic regions from SNP 157760 to 158360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:20,732 DEBUG Processing 406/596 atomic regions from SNP 121584 to 122184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:20,744 DEBUG Processing 87/528 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,839 DEBUG Processing 657/675 atomic regions from SNP 196982 to 197582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:20,853 DEBUG Processing 384/557 atomic regions from SNP 115135 to 115735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:20,888 DEBUG Processing 626/704 atomic regions from SNP 187703 to 188303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:20,949 DEBUG Processing 527/657 atomic regions from SNP 158060 to 158660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:21,007 DEBUG Processing 88/528 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,019 DEBUG Processing 407/596 atomic regions from SNP 121884 to 122484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:21,123 DEBUG Processing 385/557 atomic regions from SNP 115435 to 116035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:21,127 DEBUG Processing 658/675 atomic regions from SNP 197282 to 197882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:21,188 DEBUG Processing 627/704 atomic regions from SNP 188003 to 188603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:21,237 DEBUG Processing 528/657 atomic regions from SNP 158360 to 158960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:21,269 DEBUG Processing 89/528 atomic regions from SNP 26488 to 27089 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,317 DEBUG Processing 408/596 atomic regions from SNP 122184 to 122784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:21,389 DEBUG Processing 386/557 atomic regions from SNP 115735 to 116335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:21,413 DEBUG Processing 659/675 atomic regions from SNP 197582 to 198182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:21,490 DEBUG Processing 628/704 atomic regions from SNP 188303 to 188903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:21,529 DEBUG Processing 529/657 atomic regions from SNP 158660 to 159260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:21,533 DEBUG Processing 90/528 atomic regions from SNP 26789 to 27390 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,586 DEBUG Processing 409/596 atomic regions from SNP 122484 to 123084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:21,655 DEBUG Processing 387/557 atomic regions from SNP 116035 to 116635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:21,697 DEBUG Processing 660/675 atomic regions from SNP 197882 to 198482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:21,798 DEBUG Processing 91/528 atomic regions from SNP 27090 to 27691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,817 DEBUG Processing 629/704 atomic regions from SNP 188603 to 189203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:21,822 DEBUG Processing 530/657 atomic regions from SNP 158960 to 159560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:21,857 DEBUG Processing 410/596 atomic regions from SNP 122784 to 123384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:21,919 DEBUG Processing 388/557 atomic regions from SNP 116335 to 116935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:21,981 DEBUG Processing 661/675 atomic regions from SNP 198182 to 198782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:22,062 DEBUG Processing 92/528 atomic regions from SNP 27391 to 27991 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,132 DEBUG Processing 531/657 atomic regions from SNP 159260 to 159860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:22,134 DEBUG Processing 630/704 atomic regions from SNP 188903 to 189503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:22,153 DEBUG Processing 411/596 atomic regions from SNP 123084 to 123684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:22,183 DEBUG Processing 389/557 atomic regions from SNP 116635 to 117235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:22,265 DEBUG Processing 662/675 atomic regions from SNP 198482 to 199082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:22,319 DEBUG Processing 93/528 atomic regions from SNP 27691 to 28291 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,436 DEBUG Processing 631/704 atomic regions from SNP 189203 to 189803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:22,438 DEBUG Processing 532/657 atomic regions from SNP 159560 to 160160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:22,452 DEBUG Processing 390/557 atomic regions from SNP 116935 to 117535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:22,459 DEBUG Processing 412/596 atomic regions from SNP 123384 to 123984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:22,553 DEBUG Processing 663/675 atomic regions from SNP 198782 to 199382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:22,580 DEBUG Processing 94/528 atomic regions from SNP 27991 to 28591 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,725 DEBUG Processing 391/557 atomic regions from SNP 117235 to 117835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:22,734 DEBUG Processing 413/596 atomic regions from SNP 123684 to 124284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:22,736 DEBUG Processing 533/657 atomic regions from SNP 159860 to 160460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:22,743 DEBUG Processing 632/704 atomic regions from SNP 189503 to 190103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:22,841 DEBUG Processing 664/675 atomic regions from SNP 199082 to 199682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:22,844 DEBUG Processing 95/528 atomic regions from SNP 28291 to 28891 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,997 DEBUG Processing 392/557 atomic regions from SNP 117535 to 118135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:23,011 DEBUG Processing 414/596 atomic regions from SNP 123984 to 124584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:23,032 DEBUG Processing 534/657 atomic regions from SNP 160160 to 160760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:23,045 DEBUG Processing 633/704 atomic regions from SNP 189803 to 190403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:23,110 DEBUG Processing 96/528 atomic regions from SNP 28591 to 29191 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,131 DEBUG Processing 665/675 atomic regions from SNP 199382 to 199982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:23,264 DEBUG Processing 393/557 atomic regions from SNP 117835 to 118435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:23,286 DEBUG Processing 415/596 atomic regions from SNP 124284 to 124884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:23,345 DEBUG Processing 634/704 atomic regions from SNP 190103 to 190703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:23,345 DEBUG Processing 535/657 atomic regions from SNP 160460 to 161060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:23,373 DEBUG Processing 97/528 atomic regions from SNP 28891 to 29491 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,416 DEBUG Processing 666/675 atomic regions from SNP 199682 to 200282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:23,536 DEBUG Processing 394/557 atomic regions from SNP 118135 to 118735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:23,554 DEBUG Processing 416/596 atomic regions from SNP 124584 to 125184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:23,636 DEBUG Processing 98/528 atomic regions from SNP 29191 to 29791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,650 DEBUG Processing 635/704 atomic regions from SNP 190403 to 191003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:23,663 DEBUG Processing 536/657 atomic regions from SNP 160760 to 161360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:23,702 DEBUG Processing 667/675 atomic regions from SNP 199982 to 200582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:23,800 DEBUG Processing 395/557 atomic regions from SNP 118435 to 119035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:23,822 DEBUG Processing 417/596 atomic regions from SNP 124884 to 125484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:23,903 DEBUG Processing 99/528 atomic regions from SNP 29491 to 30091 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,953 DEBUG Processing 636/704 atomic regions from SNP 190703 to 191303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:23,957 DEBUG Processing 537/657 atomic regions from SNP 161060 to 161660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:23,988 DEBUG Processing 668/675 atomic regions from SNP 200282 to 200882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:24,064 DEBUG Processing 396/557 atomic regions from SNP 118735 to 119335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:24,122 DEBUG Processing 418/596 atomic regions from SNP 125184 to 125784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:24,162 DEBUG Processing 100/528 atomic regions from SNP 29791 to 30391 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,251 DEBUG Processing 538/657 atomic regions from SNP 161360 to 161960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:24,254 DEBUG Processing 637/704 atomic regions from SNP 191003 to 191603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:24,276 DEBUG Processing 669/675 atomic regions from SNP 200582 to 201182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:24,328 DEBUG Processing 397/557 atomic regions from SNP 119035 to 119635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:24,400 DEBUG Processing 419/596 atomic regions from SNP 125484 to 126084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:24,419 DEBUG Processing 101/528 atomic regions from SNP 30091 to 30691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,546 DEBUG Processing 539/657 atomic regions from SNP 161660 to 162260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:24,555 DEBUG Processing 638/704 atomic regions from SNP 191303 to 191903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:24,566 DEBUG Processing 670/675 atomic regions from SNP 200882 to 201482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:24,596 DEBUG Processing 398/557 atomic regions from SNP 119335 to 119935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:24,672 DEBUG Processing 420/596 atomic regions from SNP 125784 to 126384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:24,680 DEBUG Processing 102/528 atomic regions from SNP 30391 to 30991 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,856 DEBUG Processing 671/675 atomic regions from SNP 201182 to 201782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:24,859 DEBUG Processing 639/704 atomic regions from SNP 191603 to 192203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:24,861 DEBUG Processing 540/657 atomic regions from SNP 161960 to 162560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:24,865 DEBUG Processing 399/557 atomic regions from SNP 119635 to 120235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:24,943 DEBUG Processing 103/528 atomic regions from SNP 30691 to 31291 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,944 DEBUG Processing 421/596 atomic regions from SNP 126084 to 126684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:25,140 DEBUG Processing 400/557 atomic regions from SNP 119935 to 120535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:25,149 DEBUG Processing 672/675 atomic regions from SNP 201482 to 202082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:25,162 DEBUG Processing 640/704 atomic regions from SNP 191903 to 192503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:25,184 DEBUG Processing 541/657 atomic regions from SNP 162260 to 162860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:25,208 DEBUG Processing 104/528 atomic regions from SNP 30991 to 31591 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,218 DEBUG Processing 422/596 atomic regions from SNP 126384 to 126984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:25,411 DEBUG Processing 401/557 atomic regions from SNP 120235 to 120835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:25,445 DEBUG Processing 673/675 atomic regions from SNP 201782 to 202382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:25,465 DEBUG Processing 641/704 atomic regions from SNP 192203 to 192803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:25,474 DEBUG Processing 105/528 atomic regions from SNP 31291 to 31891 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,485 DEBUG Processing 542/657 atomic regions from SNP 162560 to 163160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:25,500 DEBUG Processing 423/596 atomic regions from SNP 126684 to 127284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:25,674 DEBUG Processing 402/557 atomic regions from SNP 120535 to 121135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:25,740 DEBUG Processing 674/675 atomic regions from SNP 202082 to 202682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:25,743 DEBUG Processing 106/528 atomic regions from SNP 31591 to 32191 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,767 DEBUG Processing 642/704 atomic regions from SNP 192503 to 193103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:25,784 DEBUG Processing 543/657 atomic regions from SNP 162860 to 163460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:25,800 DEBUG Processing 424/596 atomic regions from SNP 126984 to 127584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:25,936 DEBUG Processing 403/557 atomic regions from SNP 120835 to 121435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:26,007 DEBUG Processing 107/528 atomic regions from SNP 31891 to 32491 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,048 DEBUG Processing 675/675 atomic regions from SNP 202382 to 202982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:26,068 DEBUG Processing 643/704 atomic regions from SNP 192803 to 193403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:26,103 DEBUG Processing 544/657 atomic regions from SNP 163160 to 163760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:26,108 DEBUG Processing 425/596 atomic regions from SNP 127284 to 127884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:26,197 DEBUG Processing 404/557 atomic regions from SNP 121135 to 121735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:26,269 DEBUG Processing 108/528 atomic regions from SNP 32191 to 32791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,275 DEBUG Unique SNPs positions in subchromosome 1: 202983 2025-01-31 09:59:26,369 DEBUG Processing 644/704 atomic regions from SNP 193103 to 193703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:26,416 DEBUG Processing 426/596 atomic regions from SNP 127584 to 128184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:26,418 DEBUG Processing 545/657 atomic regions from SNP 163460 to 164060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:26,460 DEBUG Processing 405/557 atomic regions from SNP 121435 to 122035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:26,558 DEBUG Processing 109/528 atomic regions from SNP 32491 to 33091 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,668 DEBUG Processing 645/704 atomic regions from SNP 193403 to 194003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:26,722 DEBUG Processing 427/596 atomic regions from SNP 127884 to 128484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:26,726 DEBUG Processing 406/557 atomic regions from SNP 121735 to 122335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:26,739 DEBUG Processing 546/657 atomic regions from SNP 163760 to 164360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:26,843 DEBUG Processing 110/528 atomic regions from SNP 32791 to 33391 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,963 DEBUG Processing 646/704 atomic regions from SNP 193703 to 194303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:26,993 DEBUG Processing 407/557 atomic regions from SNP 122035 to 122635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:27,027 DEBUG Processing 547/657 atomic regions from SNP 164060 to 164660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:27,028 DEBUG Processing 428/596 atomic regions from SNP 128184 to 128784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:27,116 DEBUG Processing 111/528 atomic regions from SNP 33091 to 33691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,261 DEBUG Processing 647/704 atomic regions from SNP 194003 to 194603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:27,262 DEBUG Processing 408/557 atomic regions from SNP 122335 to 122935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:27,327 DEBUG Processing 548/657 atomic regions from SNP 164360 to 164960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:27,336 DEBUG Processing 429/596 atomic regions from SNP 128484 to 129084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:27,395 DEBUG Processing 112/528 atomic regions from SNP 33391 to 33991 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,530 DEBUG Processing 409/557 atomic regions from SNP 122635 to 123235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:27,559 DEBUG Processing 648/704 atomic regions from SNP 194303 to 194903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:27,615 DEBUG Processing 549/657 atomic regions from SNP 164660 to 165260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:27,637 DEBUG Processing 430/596 atomic regions from SNP 128784 to 129384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:27,684 DEBUG Processing 113/528 atomic regions from SNP 33691 to 34291 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,792 DEBUG Processing 410/557 atomic regions from SNP 122935 to 123535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:27,856 DEBUG Processing 649/704 atomic regions from SNP 194603 to 195203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:27,902 DEBUG Processing 550/657 atomic regions from SNP 164960 to 165560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:27,947 DEBUG Processing 431/596 atomic regions from SNP 129084 to 129684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:27,973 DEBUG Processing 114/528 atomic regions from SNP 33991 to 34591 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,053 DEBUG Processing 411/557 atomic regions from SNP 123235 to 123835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:28,155 DEBUG Processing 650/704 atomic regions from SNP 194903 to 195503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:28,190 DEBUG Processing 551/657 atomic regions from SNP 165260 to 165860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:28,252 DEBUG Processing 432/596 atomic regions from SNP 129384 to 129984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:28,272 DEBUG Processing 115/528 atomic regions from SNP 34291 to 34891 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,316 DEBUG Processing 412/557 atomic regions from SNP 123535 to 124135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:28,452 DEBUG Processing 651/704 atomic regions from SNP 195203 to 195803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:28,477 DEBUG Processing 552/657 atomic regions from SNP 165560 to 166160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:28,548 DEBUG Processing 433/596 atomic regions from SNP 129684 to 130284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:28,574 DEBUG Processing 116/528 atomic regions from SNP 34591 to 35191 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,582 DEBUG Processing 413/557 atomic regions from SNP 123835 to 124435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:28,748 DEBUG Processing 652/704 atomic regions from SNP 195503 to 196103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:28,770 DEBUG Processing 553/657 atomic regions from SNP 165860 to 166460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:28,853 DEBUG Processing 414/557 atomic regions from SNP 124135 to 124735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:28,854 DEBUG Processing 434/596 atomic regions from SNP 129984 to 130584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:28,871 DEBUG Processing 117/528 atomic regions from SNP 34891 to 35491 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,045 DEBUG Processing 653/704 atomic regions from SNP 195803 to 196403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:29,082 DEBUG Processing 554/657 atomic regions from SNP 166160 to 166760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:29,120 DEBUG Processing 415/557 atomic regions from SNP 124435 to 125035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:29,133 DEBUG Processing 435/596 atomic regions from SNP 130284 to 130884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:29,162 DEBUG Processing 118/528 atomic regions from SNP 35191 to 35791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,343 DEBUG Processing 654/704 atomic regions from SNP 196103 to 196703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:29,386 DEBUG Processing 555/657 atomic regions from SNP 166460 to 167060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:29,387 DEBUG Processing 416/557 atomic regions from SNP 124735 to 125335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:29,434 DEBUG Processing 436/596 atomic regions from SNP 130584 to 131184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:29,453 DEBUG Processing 119/528 atomic regions from SNP 35491 to 36091 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,641 DEBUG Processing 655/704 atomic regions from SNP 196403 to 197003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:29,655 DEBUG Processing 417/557 atomic regions from SNP 125035 to 125635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:29,703 DEBUG Processing 556/657 atomic regions from SNP 166760 to 167360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:29,734 DEBUG Processing 120/528 atomic regions from SNP 35791 to 36391 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,742 DEBUG Processing 437/596 atomic regions from SNP 130884 to 131484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:29,923 DEBUG Processing 418/557 atomic regions from SNP 125335 to 125935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:29,939 DEBUG Processing 656/704 atomic regions from SNP 196703 to 197303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:29,989 DEBUG Processing 557/657 atomic regions from SNP 167060 to 167660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:30,019 DEBUG Processing 121/528 atomic regions from SNP 36091 to 36691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,043 DEBUG Processing 438/596 atomic regions from SNP 131184 to 131784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:30,188 DEBUG Processing 419/557 atomic regions from SNP 125635 to 126235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:30,237 DEBUG Processing 657/704 atomic regions from SNP 197003 to 197603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:30,274 DEBUG Processing 558/657 atomic regions from SNP 167360 to 167960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:30,306 DEBUG Processing 122/528 atomic regions from SNP 36391 to 36991 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,349 DEBUG Processing 439/596 atomic regions from SNP 131484 to 132084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:30,449 DEBUG Processing 420/557 atomic regions from SNP 125935 to 126535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:30,535 DEBUG Processing 658/704 atomic regions from SNP 197303 to 197903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:30,565 DEBUG Processing 559/657 atomic regions from SNP 167660 to 168260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:30,603 DEBUG Processing 123/528 atomic regions from SNP 36691 to 37291 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,657 DEBUG Processing 440/596 atomic regions from SNP 131784 to 132384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:30,710 DEBUG Processing 421/557 atomic regions from SNP 126235 to 126835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:30,834 DEBUG Processing 659/704 atomic regions from SNP 197603 to 198203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:30,880 DEBUG Processing 560/657 atomic regions from SNP 167960 to 168560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:30,897 DEBUG Processing 124/528 atomic regions from SNP 36991 to 37591 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,947 DEBUG Processing 441/596 atomic regions from SNP 132084 to 132684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:30,970 DEBUG Processing 422/557 atomic regions from SNP 126535 to 127135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:31,130 DEBUG Processing 660/704 atomic regions from SNP 197903 to 198503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:31,166 DEBUG Processing 561/657 atomic regions from SNP 168260 to 168860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:31,190 DEBUG Processing 125/528 atomic regions from SNP 37291 to 37891 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,235 DEBUG Processing 423/557 atomic regions from SNP 126835 to 127435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:31,240 DEBUG Processing 442/596 atomic regions from SNP 132384 to 132984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:31,427 DEBUG Processing 661/704 atomic regions from SNP 198203 to 198803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:31,452 DEBUG Processing 562/657 atomic regions from SNP 168560 to 169160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:31,476 DEBUG Processing 126/528 atomic regions from SNP 37591 to 38191 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,500 DEBUG Processing 424/557 atomic regions from SNP 127135 to 127735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:31,543 DEBUG Processing 443/596 atomic regions from SNP 132684 to 133284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:31,725 DEBUG Processing 662/704 atomic regions from SNP 198503 to 199103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:31,744 DEBUG Processing 563/657 atomic regions from SNP 168860 to 169460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:31,750 DEBUG Processing 127/528 atomic regions from SNP 37891 to 38491 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,769 DEBUG Processing 425/557 atomic regions from SNP 127435 to 128035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:31,850 DEBUG Processing 444/596 atomic regions from SNP 132984 to 133584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:32,026 DEBUG Processing 663/704 atomic regions from SNP 198803 to 199403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:32,035 DEBUG Processing 128/528 atomic regions from SNP 38191 to 38791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,036 DEBUG Processing 564/657 atomic regions from SNP 169160 to 169760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:32,040 DEBUG Processing 426/557 atomic regions from SNP 127735 to 128335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:32,161 DEBUG Processing 445/596 atomic regions from SNP 133284 to 133884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:32,275 DEBUG Subchromosome time: 224.4757384789409, subchromosome SNPs: 202983 2025-01-31 09:59:32,275 DEBUG Estimated BADs: [2.21, 1.10, 2.21, 1.10, 15.44, 0.74, 22.05, 4.41, 0.55, 2.21, 8.82, 2.21, 11.03, 2.21, 4.41, 1.10, 6.62, 2.21, 6.62, 2.21, 22.05, 0.55, 19.85, 2.21, 15.44, 1.10, 17.64, 0.74, 2.21, 4.41, 2.21, 6.62, 2.21, 1.10, 4.41] SNP counts: [2803, 6932, 8394, 12530, 1548, 1722, 918, 2583, 4199, 38601, 1051, 8730, 2065, 4876, 5027, 3024, 2767, 12441, 1331, 7133, 99, 4511, 115, 1248, 291, 3373, 90, 7979, 15217, 8719, 17990, 2000, 4664, 7228, 784] SNP IDs counts: [2803, 6932, 8394, 12530, 1548, 1722, 918, 2583, 4199, 38601, 1051, 8730, 2065, 4876, 5027, 3024, 2767, 12441, 1331, 7133, 99, 4511, 115, 1248, 291, 3373, 90, 7979, 15217, 8719, 17990, 2000, 4664, 7228, 784] Critical gap: 598060bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.71Mbp, 8.78Mbp, 13.95Mbp, 21.16Mbp, 22.05Mbp, 23.26Mbp, 23.77Mbp, 25.17Mbp, 27.61Mbp, 48.80Mbp, 49.34Mbp, 54.44Mbp, 55.54Mbp, 58.11Mbp, 60.78Mbp, 63.09Mbp, 64.58Mbp, 73.24Mbp, 73.94Mbp, 78.16Mbp, 78.21Mbp, 80.88Mbp, 80.94Mbp, 81.63Mbp, 81.78Mbp, 83.69Mbp, 83.74Mbp, 88.59Mbp, 96.93Mbp, 101.69Mbp, 111.68Mbp, 112.74Mbp, 115.28Mbp, 119.43Mbp, 120.42Mbp] 2025-01-31 09:59:32,275 DEBUG chr13 time: 224.47623083391227 s 2025-01-31 09:59:32,310 DEBUG Processing 427/557 atomic regions from SNP 128035 to 128635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:32,322 DEBUG Processing 129/528 atomic regions from SNP 38491 to 39091 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,331 DEBUG Processing 565/657 atomic regions from SNP 169460 to 170060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:32,352 DEBUG Processing 664/704 atomic regions from SNP 199103 to 199703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:32,450 DEBUG chr13: Fitting background model for 35 segments 2025-01-31 09:59:32,470 DEBUG Processing 446/596 atomic regions from SNP 133584 to 134184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:32,578 DEBUG Processing 428/557 atomic regions from SNP 128335 to 128935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:32,611 DEBUG Processing 130/528 atomic regions from SNP 38791 to 39391 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,623 DEBUG Processing 566/657 atomic regions from SNP 169760 to 170360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:32,688 DEBUG Processing 665/704 atomic regions from SNP 199403 to 200003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:32,777 DEBUG Processing 447/596 atomic regions from SNP 133884 to 134484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:32,845 DEBUG Processing 429/557 atomic regions from SNP 128635 to 129235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:32,910 DEBUG Processing 131/528 atomic regions from SNP 39091 to 39691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,912 DEBUG Processing 567/657 atomic regions from SNP 170060 to 170660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:33,021 DEBUG Processing 666/704 atomic regions from SNP 199703 to 200303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:33,086 DEBUG Processing 448/596 atomic regions from SNP 134184 to 134784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:33,112 DEBUG Processing 430/557 atomic regions from SNP 128935 to 129535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:33,208 DEBUG Processing 132/528 atomic regions from SNP 39391 to 39991 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,213 DEBUG Processing 568/657 atomic regions from SNP 170360 to 170960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:33,350 DEBUG Processing 667/704 atomic regions from SNP 200003 to 200603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:33,381 DEBUG Processing 431/557 atomic regions from SNP 129235 to 129835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:33,401 DEBUG Processing 449/596 atomic regions from SNP 134484 to 135084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:33,474 DEBUG Processing 133/528 atomic regions from SNP 39691 to 40291 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,522 DEBUG Processing 569/657 atomic regions from SNP 170660 to 171260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:33,664 DEBUG Processing 432/557 atomic regions from SNP 129535 to 130135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:33,683 DEBUG Processing 668/704 atomic regions from SNP 200303 to 200903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:33,713 DEBUG Processing 450/596 atomic regions from SNP 134784 to 135384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:33,771 DEBUG Processing 134/528 atomic regions from SNP 39991 to 40591 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,826 DEBUG Processing 570/657 atomic regions from SNP 170960 to 171560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:33,961 DEBUG Processing 433/557 atomic regions from SNP 129835 to 130435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:34,023 DEBUG Processing 669/704 atomic regions from SNP 200603 to 201203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:34,026 DEBUG Processing 451/596 atomic regions from SNP 135084 to 135684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:34,069 DEBUG Processing 135/528 atomic regions from SNP 40291 to 40891 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,114 DEBUG Processing 571/657 atomic regions from SNP 171260 to 171860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:34,229 DEBUG Processing 434/557 atomic regions from SNP 130135 to 130735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:34,329 DEBUG Processing 452/596 atomic regions from SNP 135384 to 135984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:34,367 DEBUG Processing 670/704 atomic regions from SNP 200903 to 201503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:34,367 DEBUG Processing 136/528 atomic regions from SNP 40591 to 41191 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,404 DEBUG Processing 572/657 atomic regions from SNP 171560 to 172160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:34,496 DEBUG Processing 435/557 atomic regions from SNP 130435 to 131035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:34,628 DEBUG Processing 453/596 atomic regions from SNP 135684 to 136284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:34,659 DEBUG Processing 137/528 atomic regions from SNP 40891 to 41491 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,704 DEBUG Processing 671/704 atomic regions from SNP 201203 to 201803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:34,713 DEBUG Processing 573/657 atomic regions from SNP 171860 to 172460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:34,762 DEBUG Processing 436/557 atomic regions from SNP 130735 to 131335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:34,933 DEBUG Processing 454/596 atomic regions from SNP 135984 to 136584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:34,951 DEBUG Processing 138/528 atomic regions from SNP 41191 to 41791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,033 DEBUG Processing 574/657 atomic regions from SNP 172160 to 172760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:35,033 DEBUG Processing 437/557 atomic regions from SNP 131035 to 131635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:35,038 DEBUG Processing 672/704 atomic regions from SNP 201503 to 202103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:35,240 DEBUG Processing 455/596 atomic regions from SNP 136284 to 136884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:35,252 DEBUG Processing 139/528 atomic regions from SNP 41491 to 42091 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,303 DEBUG Processing 438/557 atomic regions from SNP 131335 to 131935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:35,354 DEBUG Processing 575/657 atomic regions from SNP 172460 to 173060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:35,374 DEBUG Processing 673/704 atomic regions from SNP 201803 to 202403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:35,543 DEBUG Processing 140/528 atomic regions from SNP 41791 to 42391 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,544 DEBUG Processing 456/596 atomic regions from SNP 136584 to 137184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:35,573 DEBUG Processing 439/557 atomic regions from SNP 131635 to 132235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:35,667 DEBUG Processing 576/657 atomic regions from SNP 172760 to 173360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:35,704 DEBUG Processing 674/704 atomic regions from SNP 202103 to 202703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:35,831 DEBUG Processing 141/528 atomic regions from SNP 42091 to 42691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,842 DEBUG Processing 440/557 atomic regions from SNP 131935 to 132535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:35,847 DEBUG Processing 457/596 atomic regions from SNP 136884 to 137484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:35,952 DEBUG Processing 577/657 atomic regions from SNP 173060 to 173660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:36,024 DEBUG Processing 675/704 atomic regions from SNP 202403 to 203003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:36,113 DEBUG Processing 441/557 atomic regions from SNP 132235 to 132835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:36,129 DEBUG Processing 142/528 atomic regions from SNP 42391 to 42991 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,138 DEBUG Processing 458/596 atomic regions from SNP 137184 to 137784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:36,240 DEBUG Processing 578/657 atomic regions from SNP 173360 to 173960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:36,345 DEBUG Processing 676/704 atomic regions from SNP 202703 to 203303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:36,383 DEBUG Processing 442/557 atomic regions from SNP 132535 to 133135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:36,425 DEBUG Processing 143/528 atomic regions from SNP 42691 to 43291 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,443 DEBUG Processing 459/596 atomic regions from SNP 137484 to 138084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:36,526 DEBUG Processing 579/657 atomic regions from SNP 173660 to 174260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:36,652 DEBUG Processing 443/557 atomic regions from SNP 132835 to 133435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:36,664 DEBUG Processing 677/704 atomic regions from SNP 203003 to 203603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:36,718 DEBUG Processing 144/528 atomic regions from SNP 42991 to 43591 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,753 DEBUG Processing 460/596 atomic regions from SNP 137784 to 138384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:36,812 DEBUG Processing 580/657 atomic regions from SNP 173960 to 174560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:36,919 DEBUG Processing 444/557 atomic regions from SNP 133135 to 133735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:36,983 DEBUG Processing 678/704 atomic regions from SNP 203303 to 203903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:37,009 DEBUG Processing 145/528 atomic regions from SNP 43291 to 43891 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,062 DEBUG Processing 461/596 atomic regions from SNP 138084 to 138684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:37,098 DEBUG Processing 581/657 atomic regions from SNP 174260 to 174860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:37,185 DEBUG Processing 445/557 atomic regions from SNP 133435 to 134035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:37,278 DEBUG Processing 679/704 atomic regions from SNP 203603 to 204203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:37,309 DEBUG Processing 146/528 atomic regions from SNP 43591 to 44191 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,370 DEBUG Processing 462/596 atomic regions from SNP 138384 to 138984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:37,388 DEBUG Processing 582/657 atomic regions from SNP 174560 to 175160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:37,448 DEBUG Processing 446/557 atomic regions from SNP 133735 to 134335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:37,601 DEBUG Processing 147/528 atomic regions from SNP 43891 to 44491 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,605 DEBUG Processing 680/704 atomic regions from SNP 203903 to 204503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:37,676 DEBUG Processing 583/657 atomic regions from SNP 174860 to 175460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:37,681 DEBUG Processing 463/596 atomic regions from SNP 138684 to 139284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:37,712 DEBUG Processing 447/557 atomic regions from SNP 134035 to 134635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:37,890 DEBUG Processing 148/528 atomic regions from SNP 44191 to 44791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,933 DEBUG Processing 681/704 atomic regions from SNP 204203 to 204803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:37,965 DEBUG Processing 584/657 atomic regions from SNP 175160 to 175760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:37,982 DEBUG Processing 448/557 atomic regions from SNP 134335 to 134935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:37,991 DEBUG Processing 464/596 atomic regions from SNP 138984 to 139584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:38,173 DEBUG Processing 149/528 atomic regions from SNP 44491 to 45091 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,246 DEBUG Processing 682/704 atomic regions from SNP 204503 to 205103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:38,251 DEBUG Processing 449/557 atomic regions from SNP 134635 to 135235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:38,256 DEBUG Processing 585/657 atomic regions from SNP 175460 to 176060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:38,297 DEBUG Processing 465/596 atomic regions from SNP 139284 to 139884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:38,450 DEBUG Processing 150/528 atomic regions from SNP 44791 to 45391 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,523 DEBUG Processing 450/557 atomic regions from SNP 134935 to 135535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:38,549 DEBUG Processing 586/657 atomic regions from SNP 175760 to 176360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:38,554 DEBUG Processing 683/704 atomic regions from SNP 204803 to 205403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:38,575 DEBUG Processing 466/596 atomic regions from SNP 139584 to 140184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:38,720 DEBUG Processing 151/528 atomic regions from SNP 45091 to 45691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,793 DEBUG Processing 451/557 atomic regions from SNP 135235 to 135835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:38,841 DEBUG Processing 587/657 atomic regions from SNP 176060 to 176660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:38,849 DEBUG Processing 467/596 atomic regions from SNP 139884 to 140484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:38,872 DEBUG Processing 684/704 atomic regions from SNP 205103 to 205703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:38,980 DEBUG Processing 152/528 atomic regions from SNP 45391 to 45991 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,061 DEBUG Processing 452/557 atomic regions from SNP 135535 to 136135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:39,131 DEBUG Processing 588/657 atomic regions from SNP 176360 to 176960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:39,136 DEBUG Processing 468/596 atomic regions from SNP 140184 to 140784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:39,180 DEBUG Processing 685/704 atomic regions from SNP 205403 to 206003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:39,240 DEBUG Processing 153/528 atomic regions from SNP 45691 to 46291 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,328 DEBUG Processing 453/557 atomic regions from SNP 135835 to 136435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:39,427 DEBUG Processing 589/657 atomic regions from SNP 176660 to 177260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:39,444 DEBUG Processing 469/596 atomic regions from SNP 140484 to 141084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:39,478 DEBUG Processing 686/704 atomic regions from SNP 205703 to 206303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:39,501 DEBUG Processing 154/528 atomic regions from SNP 45991 to 46591 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,593 DEBUG Processing 454/557 atomic regions from SNP 136135 to 136735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:39,721 DEBUG Processing 590/657 atomic regions from SNP 176960 to 177560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:39,755 DEBUG Processing 470/596 atomic regions from SNP 140784 to 141384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:39,767 DEBUG Processing 155/528 atomic regions from SNP 46291 to 46891 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,775 DEBUG Processing 687/704 atomic regions from SNP 206003 to 206603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:39,860 DEBUG Processing 455/557 atomic regions from SNP 136435 to 137035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:40,012 DEBUG Processing 591/657 atomic regions from SNP 177260 to 177860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:40,033 DEBUG Processing 156/528 atomic regions from SNP 46591 to 47191 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,063 DEBUG Processing 471/596 atomic regions from SNP 141084 to 141684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:40,073 DEBUG Processing 688/704 atomic regions from SNP 206303 to 206903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:40,123 DEBUG Processing 456/557 atomic regions from SNP 136735 to 137335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:40,294 DEBUG Processing 157/528 atomic regions from SNP 46891 to 47491 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,302 DEBUG Processing 592/657 atomic regions from SNP 177560 to 178160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:40,372 DEBUG Processing 689/704 atomic regions from SNP 206603 to 207203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:40,373 DEBUG Processing 472/596 atomic regions from SNP 141384 to 141984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:40,389 DEBUG Processing 457/557 atomic regions from SNP 137035 to 137635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:40,555 DEBUG Processing 158/528 atomic regions from SNP 47191 to 47791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,610 DEBUG Processing 593/657 atomic regions from SNP 177860 to 178460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:40,663 DEBUG Processing 458/557 atomic regions from SNP 137335 to 137935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:40,672 DEBUG Processing 473/596 atomic regions from SNP 141684 to 142284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:40,682 DEBUG Processing 690/704 atomic regions from SNP 206903 to 207503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:40,834 DEBUG Processing 159/528 atomic regions from SNP 47491 to 48091 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,913 DEBUG Processing 594/657 atomic regions from SNP 178160 to 178760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:40,931 DEBUG Processing 459/557 atomic regions from SNP 137635 to 138235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:40,946 DEBUG Processing 474/596 atomic regions from SNP 141984 to 142584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:40,989 DEBUG Processing 691/704 atomic regions from SNP 207203 to 207803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:41,114 DEBUG Processing 160/528 atomic regions from SNP 47791 to 48391 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,202 DEBUG Processing 460/557 atomic regions from SNP 137935 to 138535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:41,202 DEBUG Processing 595/657 atomic regions from SNP 178460 to 179060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:41,221 DEBUG Processing 475/596 atomic regions from SNP 142284 to 142884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:41,284 DEBUG Processing 692/704 atomic regions from SNP 207503 to 208103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:41,377 DEBUG Processing 161/528 atomic regions from SNP 48091 to 48691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,473 DEBUG Processing 461/557 atomic regions from SNP 138235 to 138835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:41,493 DEBUG Processing 596/657 atomic regions from SNP 178760 to 179360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:41,517 DEBUG Processing 476/596 atomic regions from SNP 142584 to 143184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:41,588 DEBUG Processing 693/704 atomic regions from SNP 207803 to 208403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:41,643 DEBUG Processing 162/528 atomic regions from SNP 48391 to 48991 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,741 DEBUG Processing 462/557 atomic regions from SNP 138535 to 139135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:41,783 DEBUG Processing 597/657 atomic regions from SNP 179060 to 179660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:41,807 DEBUG Processing 477/596 atomic regions from SNP 142884 to 143484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:41,903 DEBUG Processing 163/528 atomic regions from SNP 48691 to 49291 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,910 DEBUG Processing 694/704 atomic regions from SNP 208103 to 208703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:42,011 DEBUG Processing 463/557 atomic regions from SNP 138835 to 139435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:42,075 DEBUG Processing 598/657 atomic regions from SNP 179360 to 179960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:42,084 DEBUG Processing 478/596 atomic regions from SNP 143184 to 143784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:42,187 DEBUG Processing 164/528 atomic regions from SNP 48991 to 49591 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,232 DEBUG Processing 695/704 atomic regions from SNP 208403 to 209003 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:42,280 DEBUG Processing 464/557 atomic regions from SNP 139135 to 139735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:42,364 DEBUG Processing 599/657 atomic regions from SNP 179660 to 180260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:42,381 DEBUG Processing 479/596 atomic regions from SNP 143484 to 144084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:42,467 DEBUG Processing 165/528 atomic regions from SNP 49291 to 49891 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,546 DEBUG Processing 465/557 atomic regions from SNP 139435 to 140035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:42,561 DEBUG Processing 696/704 atomic regions from SNP 208703 to 209303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:42,654 DEBUG Processing 600/657 atomic regions from SNP 179960 to 180560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:42,675 DEBUG Processing 480/596 atomic regions from SNP 143784 to 144384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:42,729 DEBUG Processing 166/528 atomic regions from SNP 49591 to 50191 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,813 DEBUG Processing 466/557 atomic regions from SNP 139735 to 140335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:42,895 DEBUG Processing 697/704 atomic regions from SNP 209003 to 209603 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:42,941 DEBUG Processing 601/657 atomic regions from SNP 180260 to 180860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:42,969 DEBUG Processing 481/596 atomic regions from SNP 144084 to 144684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:42,991 DEBUG Processing 167/528 atomic regions from SNP 49891 to 50491 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,080 DEBUG Processing 467/557 atomic regions from SNP 140035 to 140635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:43,232 DEBUG Processing 698/704 atomic regions from SNP 209303 to 209903 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:43,234 DEBUG Processing 602/657 atomic regions from SNP 180560 to 181160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:43,247 DEBUG Processing 482/596 atomic regions from SNP 144384 to 144984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:43,255 DEBUG Processing 168/528 atomic regions from SNP 50191 to 50791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,345 DEBUG Processing 468/557 atomic regions from SNP 140335 to 140935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:43,522 DEBUG Processing 169/528 atomic regions from SNP 50491 to 51091 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,541 DEBUG Processing 483/596 atomic regions from SNP 144684 to 145284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:43,556 DEBUG Processing 603/657 atomic regions from SNP 180860 to 181460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:43,570 DEBUG Processing 699/704 atomic regions from SNP 209603 to 210203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:43,612 DEBUG Processing 469/557 atomic regions from SNP 140635 to 141235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:43,785 DEBUG Processing 170/528 atomic regions from SNP 50791 to 51391 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,824 DEBUG Processing 484/596 atomic regions from SNP 144984 to 145584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:43,880 DEBUG Processing 470/557 atomic regions from SNP 140935 to 141535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:43,886 DEBUG Processing 604/657 atomic regions from SNP 181160 to 181760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:43,899 DEBUG Processing 700/704 atomic regions from SNP 209903 to 210503 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:44,046 DEBUG Processing 171/528 atomic regions from SNP 51091 to 51691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,123 DEBUG Processing 485/596 atomic regions from SNP 145284 to 145884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:44,149 DEBUG Processing 471/557 atomic regions from SNP 141235 to 141835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:44,215 DEBUG Processing 605/657 atomic regions from SNP 181460 to 182060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:44,216 DEBUG Processing 701/704 atomic regions from SNP 210203 to 210803 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:44,327 DEBUG Processing 172/528 atomic regions from SNP 51391 to 51991 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,418 DEBUG Processing 472/557 atomic regions from SNP 141535 to 142135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:44,419 DEBUG Processing 486/596 atomic regions from SNP 145584 to 146184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:44,542 DEBUG Processing 702/704 atomic regions from SNP 210503 to 211103 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:44,543 DEBUG Processing 606/657 atomic regions from SNP 181760 to 182360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:44,622 DEBUG Processing 173/528 atomic regions from SNP 51691 to 52291 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,689 DEBUG Processing 473/557 atomic regions from SNP 141835 to 142435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:44,716 DEBUG Processing 487/596 atomic regions from SNP 145884 to 146484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:44,854 DEBUG Processing 703/704 atomic regions from SNP 210803 to 211403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:44,866 DEBUG Processing 607/657 atomic regions from SNP 182060 to 182660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:44,919 DEBUG Processing 174/528 atomic regions from SNP 51991 to 52591 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,955 DEBUG Processing 474/557 atomic regions from SNP 142135 to 142735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:44,990 DEBUG Processing 488/596 atomic regions from SNP 146184 to 146784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:45,154 DEBUG Processing 704/704 atomic regions from SNP 211103 to 211703 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:45,165 DEBUG Processing 608/657 atomic regions from SNP 182360 to 182960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:45,204 DEBUG Processing 175/528 atomic regions from SNP 52291 to 52891 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,225 DEBUG Processing 475/557 atomic regions from SNP 142435 to 143035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:45,265 DEBUG Processing 489/596 atomic regions from SNP 146484 to 147084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:45,368 DEBUG Unique SNPs positions in subchromosome 1: 211704 2025-01-31 09:59:45,470 DEBUG Processing 176/528 atomic regions from SNP 52591 to 53191 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,480 DEBUG Processing 609/657 atomic regions from SNP 182660 to 183260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:45,497 DEBUG Processing 476/557 atomic regions from SNP 142735 to 143335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:45,544 DEBUG Processing 490/596 atomic regions from SNP 146784 to 147384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:45,756 DEBUG Processing 177/528 atomic regions from SNP 52891 to 53491 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,759 DEBUG Processing 477/557 atomic regions from SNP 143035 to 143635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:45,806 DEBUG Processing 610/657 atomic regions from SNP 182960 to 183560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:45,806 DEBUG Processing 491/596 atomic regions from SNP 147084 to 147684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:46,024 DEBUG Processing 478/557 atomic regions from SNP 143335 to 143935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:46,042 DEBUG Processing 178/528 atomic regions from SNP 53191 to 53791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,075 DEBUG Processing 492/596 atomic regions from SNP 147384 to 147984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:46,124 DEBUG Processing 611/657 atomic regions from SNP 183260 to 183860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:46,286 DEBUG Processing 479/557 atomic regions from SNP 143635 to 144235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:46,333 DEBUG Processing 179/528 atomic regions from SNP 53491 to 54091 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,343 DEBUG Processing 493/596 atomic regions from SNP 147684 to 148284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:46,449 DEBUG Processing 612/657 atomic regions from SNP 183560 to 184160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:46,549 DEBUG Processing 480/557 atomic regions from SNP 143935 to 144535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:46,612 DEBUG Processing 494/596 atomic regions from SNP 147984 to 148584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:46,630 DEBUG Processing 180/528 atomic regions from SNP 53791 to 54391 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,758 DEBUG Processing 613/657 atomic regions from SNP 183860 to 184460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:46,809 DEBUG Processing 481/557 atomic regions from SNP 144235 to 144835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:46,878 DEBUG Processing 495/596 atomic regions from SNP 148284 to 148884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:46,925 DEBUG Processing 181/528 atomic regions from SNP 54091 to 54691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,054 DEBUG Processing 614/657 atomic regions from SNP 184160 to 184760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:47,068 DEBUG Processing 482/557 atomic regions from SNP 144535 to 145135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:47,144 DEBUG Processing 496/596 atomic regions from SNP 148584 to 149184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:47,206 DEBUG Processing 182/528 atomic regions from SNP 54391 to 54991 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,333 DEBUG Processing 483/557 atomic regions from SNP 144835 to 145435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:47,345 DEBUG Processing 615/657 atomic regions from SNP 184460 to 185060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:47,411 DEBUG Processing 497/596 atomic regions from SNP 148884 to 149484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:47,490 DEBUG Processing 183/528 atomic regions from SNP 54691 to 55291 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,597 DEBUG Processing 484/557 atomic regions from SNP 145135 to 145735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:47,645 DEBUG Processing 616/657 atomic regions from SNP 184760 to 185360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:47,678 DEBUG Processing 498/596 atomic regions from SNP 149184 to 149784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:47,780 DEBUG Processing 184/528 atomic regions from SNP 54991 to 55591 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,858 DEBUG Processing 485/557 atomic regions from SNP 145435 to 146035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:47,944 DEBUG Processing 499/596 atomic regions from SNP 149484 to 150084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:47,967 DEBUG Processing 617/657 atomic regions from SNP 185060 to 185660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:48,072 DEBUG Processing 185/528 atomic regions from SNP 55291 to 55891 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:48,119 DEBUG Processing 486/557 atomic regions from SNP 145735 to 146335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:48,209 DEBUG Processing 500/596 atomic regions from SNP 149784 to 150384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:48,297 DEBUG Processing 618/657 atomic regions from SNP 185360 to 185960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:48,350 DEBUG Processing 186/528 atomic regions from SNP 55591 to 56191 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:48,378 DEBUG Processing 487/557 atomic regions from SNP 146035 to 146635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:48,470 DEBUG Processing 501/596 atomic regions from SNP 150084 to 150684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:48,603 DEBUG Processing 187/528 atomic regions from SNP 55891 to 56491 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:48,625 DEBUG Processing 619/657 atomic regions from SNP 185660 to 186260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:48,637 DEBUG Processing 488/557 atomic regions from SNP 146335 to 146935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:48,732 DEBUG Processing 502/596 atomic regions from SNP 150384 to 150984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:48,863 DEBUG Processing 188/528 atomic regions from SNP 56191 to 56791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:48,897 DEBUG Processing 489/557 atomic regions from SNP 146635 to 147235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:48,948 DEBUG Processing 620/657 atomic regions from SNP 185960 to 186560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:48,994 DEBUG Processing 503/596 atomic regions from SNP 150684 to 151284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:49,121 DEBUG Processing 189/528 atomic regions from SNP 56491 to 57091 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:49,157 DEBUG Processing 490/557 atomic regions from SNP 146935 to 147535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:49,260 DEBUG Processing 621/657 atomic regions from SNP 186260 to 186860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:49,264 DEBUG Processing 504/596 atomic regions from SNP 150984 to 151584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:49,379 DEBUG Processing 190/528 atomic regions from SNP 56791 to 57391 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:49,417 DEBUG Processing 491/557 atomic regions from SNP 147235 to 147835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:49,549 DEBUG Processing 622/657 atomic regions from SNP 186560 to 187160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:49,563 DEBUG Processing 505/596 atomic regions from SNP 151284 to 151884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:49,636 DEBUG Processing 191/528 atomic regions from SNP 57091 to 57691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:49,680 DEBUG Processing 492/557 atomic regions from SNP 147535 to 148135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:49,839 DEBUG Processing 623/657 atomic regions from SNP 186860 to 187460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:49,855 DEBUG Processing 506/596 atomic regions from SNP 151584 to 152184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:49,896 DEBUG Processing 192/528 atomic regions from SNP 57391 to 57991 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:49,962 DEBUG Processing 493/557 atomic regions from SNP 147835 to 148435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:50,129 DEBUG Processing 624/657 atomic regions from SNP 187160 to 187760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:50,154 DEBUG Processing 507/596 atomic regions from SNP 151884 to 152484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:50,154 DEBUG Processing 193/528 atomic regions from SNP 57691 to 58291 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:50,240 DEBUG Processing 494/557 atomic regions from SNP 148135 to 148735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:50,416 DEBUG Processing 194/528 atomic regions from SNP 57991 to 58591 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:50,418 DEBUG Processing 625/657 atomic regions from SNP 187460 to 188060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:50,461 DEBUG Processing 508/596 atomic regions from SNP 152184 to 152784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:50,523 DEBUG Processing 495/557 atomic regions from SNP 148435 to 149035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:50,676 DEBUG Processing 195/528 atomic regions from SNP 58291 to 58891 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:50,708 DEBUG Processing 626/657 atomic regions from SNP 187760 to 188360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:50,767 DEBUG Processing 509/596 atomic regions from SNP 152484 to 153084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:50,786 DEBUG Processing 496/557 atomic regions from SNP 148735 to 149335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:50,932 DEBUG Processing 196/528 atomic regions from SNP 58591 to 59191 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:50,994 DEBUG Processing 627/657 atomic regions from SNP 188060 to 188660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:51,051 DEBUG Processing 497/557 atomic regions from SNP 149035 to 149635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:51,054 DEBUG Processing 510/596 atomic regions from SNP 152784 to 153384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:51,188 DEBUG Processing 197/528 atomic regions from SNP 58891 to 59491 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:51,283 DEBUG Processing 628/657 atomic regions from SNP 188360 to 188960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:51,315 DEBUG Processing 498/557 atomic regions from SNP 149335 to 149935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:51,323 DEBUG Processing 511/596 atomic regions from SNP 153084 to 153684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:51,445 DEBUG Processing 198/528 atomic regions from SNP 59191 to 59791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:51,574 DEBUG Processing 629/657 atomic regions from SNP 188660 to 189260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:51,585 DEBUG Processing 499/557 atomic regions from SNP 149635 to 150235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:51,596 DEBUG Processing 512/596 atomic regions from SNP 153384 to 153984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:51,706 DEBUG Processing 199/528 atomic regions from SNP 59491 to 60091 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:51,857 DEBUG Processing 500/557 atomic regions from SNP 149935 to 150535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:51,867 DEBUG Processing 630/657 atomic regions from SNP 188960 to 189560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:51,870 DEBUG Processing 513/596 atomic regions from SNP 153684 to 154284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:51,969 DEBUG Processing 200/528 atomic regions from SNP 59791 to 60391 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:52,124 DEBUG Processing 501/557 atomic regions from SNP 150235 to 150835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:52,143 DEBUG Processing 514/596 atomic regions from SNP 153984 to 154584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:52,160 DEBUG Processing 631/657 atomic regions from SNP 189260 to 189860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:52,229 DEBUG Processing 201/528 atomic regions from SNP 60091 to 60691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:52,392 DEBUG Processing 502/557 atomic regions from SNP 150535 to 151135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:52,417 DEBUG Processing 515/596 atomic regions from SNP 154284 to 154884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:52,452 DEBUG Processing 632/657 atomic regions from SNP 189560 to 190160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:52,489 DEBUG Processing 202/528 atomic regions from SNP 60391 to 60991 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:52,657 DEBUG Processing 503/557 atomic regions from SNP 150835 to 151435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:52,688 DEBUG Processing 516/596 atomic regions from SNP 154584 to 155184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:52,742 DEBUG Processing 633/657 atomic regions from SNP 189860 to 190460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:52,749 DEBUG Processing 203/528 atomic regions from SNP 60691 to 61291 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:52,919 DEBUG Processing 504/557 atomic regions from SNP 151135 to 151735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:52,957 DEBUG Processing 517/596 atomic regions from SNP 154884 to 155484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:53,010 DEBUG Processing 204/528 atomic regions from SNP 60991 to 61591 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:53,030 DEBUG Processing 634/657 atomic regions from SNP 190160 to 190760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:53,185 DEBUG Processing 505/557 atomic regions from SNP 151435 to 152035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:53,226 DEBUG Processing 518/596 atomic regions from SNP 155184 to 155784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:53,268 DEBUG Processing 205/528 atomic regions from SNP 61291 to 61891 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:53,320 DEBUG Processing 635/657 atomic regions from SNP 190460 to 191060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:53,451 DEBUG Processing 506/557 atomic regions from SNP 151735 to 152335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:53,495 DEBUG Processing 519/596 atomic regions from SNP 155484 to 156084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:53,524 DEBUG Processing 206/528 atomic regions from SNP 61591 to 62191 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:53,619 DEBUG Processing 636/657 atomic regions from SNP 190760 to 191360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:53,715 DEBUG Processing 507/557 atomic regions from SNP 152035 to 152635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:53,766 DEBUG Processing 520/596 atomic regions from SNP 155784 to 156384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:53,783 DEBUG Processing 207/528 atomic regions from SNP 61891 to 62491 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:53,931 DEBUG Processing 637/657 atomic regions from SNP 191060 to 191660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:53,987 DEBUG Processing 508/557 atomic regions from SNP 152335 to 152935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:54,034 DEBUG Processing 521/596 atomic regions from SNP 156084 to 156684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:54,042 DEBUG Processing 208/528 atomic regions from SNP 62191 to 62791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:54,219 DEBUG Processing 638/657 atomic regions from SNP 191360 to 191960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:54,280 DEBUG Processing 509/557 atomic regions from SNP 152635 to 153235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:54,302 DEBUG Processing 209/528 atomic regions from SNP 62491 to 63091 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:54,306 DEBUG Processing 522/596 atomic regions from SNP 156384 to 156984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:54,506 DEBUG Processing 639/657 atomic regions from SNP 191660 to 192260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:54,566 DEBUG Processing 210/528 atomic regions from SNP 62791 to 63391 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:54,569 DEBUG Processing 510/557 atomic regions from SNP 152935 to 153535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:54,578 DEBUG Processing 523/596 atomic regions from SNP 156684 to 157284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:54,791 DEBUG Processing 640/657 atomic regions from SNP 191960 to 192560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:54,830 DEBUG Processing 211/528 atomic regions from SNP 63091 to 63691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:54,837 DEBUG Processing 511/557 atomic regions from SNP 153235 to 153835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:54,850 DEBUG Processing 524/596 atomic regions from SNP 156984 to 157584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:55,078 DEBUG Processing 641/657 atomic regions from SNP 192260 to 192860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:55,092 DEBUG Processing 212/528 atomic regions from SNP 63391 to 63991 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:55,117 DEBUG Processing 512/557 atomic regions from SNP 153535 to 154135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:55,122 DEBUG Processing 525/596 atomic regions from SNP 157284 to 157884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:55,358 DEBUG Processing 213/528 atomic regions from SNP 63691 to 64291 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:55,376 DEBUG Processing 642/657 atomic regions from SNP 192560 to 193160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:55,396 DEBUG Processing 526/596 atomic regions from SNP 157584 to 158184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:55,414 DEBUG Processing 513/557 atomic regions from SNP 153835 to 154435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:55,621 DEBUG Processing 214/528 atomic regions from SNP 63991 to 64591 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:55,668 DEBUG Processing 527/596 atomic regions from SNP 157884 to 158484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:55,674 DEBUG Processing 643/657 atomic regions from SNP 192860 to 193460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:55,708 DEBUG Processing 514/557 atomic regions from SNP 154135 to 154735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:55,879 DEBUG Processing 215/528 atomic regions from SNP 64291 to 64891 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:55,941 DEBUG Processing 528/596 atomic regions from SNP 158184 to 158784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:55,964 DEBUG Processing 644/657 atomic regions from SNP 193160 to 193760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:55,998 DEBUG Processing 515/557 atomic regions from SNP 154435 to 155035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:56,134 DEBUG Processing 216/528 atomic regions from SNP 64591 to 65191 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:56,212 DEBUG Processing 529/596 atomic regions from SNP 158484 to 159084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:56,254 DEBUG Processing 645/657 atomic regions from SNP 193460 to 194060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:56,279 DEBUG Processing 516/557 atomic regions from SNP 154735 to 155335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:56,392 DEBUG Processing 217/528 atomic regions from SNP 64891 to 65491 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:56,481 DEBUG Processing 530/596 atomic regions from SNP 158784 to 159384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:56,543 DEBUG Processing 646/657 atomic regions from SNP 193760 to 194360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:56,580 DEBUG Processing 517/557 atomic regions from SNP 155035 to 155635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:56,647 DEBUG Processing 218/528 atomic regions from SNP 65191 to 65791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:56,748 DEBUG Processing 531/596 atomic regions from SNP 159084 to 159684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:56,837 DEBUG Processing 647/657 atomic regions from SNP 194060 to 194660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:56,886 DEBUG Processing 518/557 atomic regions from SNP 155335 to 155935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:56,907 DEBUG Processing 219/528 atomic regions from SNP 65491 to 66091 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:57,031 DEBUG Processing 532/596 atomic regions from SNP 159384 to 159984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:57,127 DEBUG Processing 648/657 atomic regions from SNP 194360 to 194960 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:57,169 DEBUG Processing 220/528 atomic regions from SNP 65791 to 66391 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:57,189 DEBUG Processing 519/557 atomic regions from SNP 155635 to 156235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:57,321 DEBUG Processing 533/596 atomic regions from SNP 159684 to 160284 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:57,431 DEBUG Processing 221/528 atomic regions from SNP 66091 to 66691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:57,442 DEBUG Processing 649/657 atomic regions from SNP 194660 to 195260 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:57,494 DEBUG Processing 520/557 atomic regions from SNP 155935 to 156535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:57,586 DEBUG Processing 534/596 atomic regions from SNP 159984 to 160584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:57,696 DEBUG Processing 222/528 atomic regions from SNP 66391 to 66991 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:57,747 DEBUG Processing 650/657 atomic regions from SNP 194960 to 195560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:57,780 DEBUG Processing 521/557 atomic regions from SNP 156235 to 156835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:57,852 DEBUG Processing 535/596 atomic regions from SNP 160284 to 160884 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:57,958 DEBUG Processing 223/528 atomic regions from SNP 66691 to 67291 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:58,037 DEBUG Processing 651/657 atomic regions from SNP 195260 to 195860 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:58,063 DEBUG Processing 522/557 atomic regions from SNP 156535 to 157135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:58,121 DEBUG Processing 536/596 atomic regions from SNP 160584 to 161184 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:58,217 DEBUG Processing 224/528 atomic regions from SNP 66991 to 67591 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:58,326 DEBUG Processing 652/657 atomic regions from SNP 195560 to 196160 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:58,368 DEBUG Processing 523/557 atomic regions from SNP 156835 to 157435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:58,392 DEBUG Processing 537/596 atomic regions from SNP 160884 to 161484 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:58,476 DEBUG Processing 225/528 atomic regions from SNP 67291 to 67891 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:58,616 DEBUG Processing 653/657 atomic regions from SNP 195860 to 196460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:58,664 DEBUG Processing 524/557 atomic regions from SNP 157135 to 157735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:58,666 DEBUG Processing 538/596 atomic regions from SNP 161184 to 161784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:58,736 DEBUG Processing 226/528 atomic regions from SNP 67591 to 68191 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:58,905 DEBUG Processing 654/657 atomic regions from SNP 196160 to 196760 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:58,939 DEBUG Processing 539/596 atomic regions from SNP 161484 to 162084 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:58,960 DEBUG Processing 525/557 atomic regions from SNP 157435 to 158035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:58,994 DEBUG Processing 227/528 atomic regions from SNP 67891 to 68491 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:59,195 DEBUG Processing 655/657 atomic regions from SNP 196460 to 197060 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:59,212 DEBUG Processing 540/596 atomic regions from SNP 161784 to 162384 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:59,256 DEBUG Processing 228/528 atomic regions from SNP 68191 to 68791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:59,258 DEBUG Processing 526/557 atomic regions from SNP 157735 to 158335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:59,485 DEBUG Processing 656/657 atomic regions from SNP 196760 to 197360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:59,490 DEBUG Processing 541/596 atomic regions from SNP 162084 to 162684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:59,520 DEBUG Processing 229/528 atomic regions from SNP 68491 to 69091 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:59,526 DEBUG Processing 527/557 atomic regions from SNP 158035 to 158635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:59,769 DEBUG Processing 542/596 atomic regions from SNP 162384 to 162984 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:59,778 DEBUG Processing 657/657 atomic regions from SNP 197060 to 197660 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:59,786 DEBUG Processing 230/528 atomic regions from SNP 68791 to 69391 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:59,796 DEBUG Processing 528/557 atomic regions from SNP 158335 to 158935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:59,992 DEBUG Unique SNPs positions in subchromosome 1: 197661 2025-01-31 10:00:00,047 DEBUG Processing 543/596 atomic regions from SNP 162684 to 163284 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:00,056 DEBUG Processing 231/528 atomic regions from SNP 69091 to 69691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:00,067 DEBUG Processing 529/557 atomic regions from SNP 158635 to 159235 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:00,318 DEBUG Processing 232/528 atomic regions from SNP 69391 to 69991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:00,318 DEBUG Processing 544/596 atomic regions from SNP 162984 to 163584 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:00,337 DEBUG Processing 530/557 atomic regions from SNP 158935 to 159535 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:00,580 DEBUG Processing 233/528 atomic regions from SNP 69691 to 70291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:00,590 DEBUG Processing 545/596 atomic regions from SNP 163284 to 163884 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:00,632 DEBUG Processing 531/557 atomic regions from SNP 159235 to 159835 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:00,842 DEBUG Processing 234/528 atomic regions from SNP 69991 to 70591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:00,861 DEBUG Processing 546/596 atomic regions from SNP 163584 to 164184 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:00,928 DEBUG Processing 532/557 atomic regions from SNP 159535 to 160135 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:01,100 DEBUG Processing 235/528 atomic regions from SNP 70291 to 70891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,130 DEBUG Processing 547/596 atomic regions from SNP 163884 to 164484 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:01,221 DEBUG Processing 533/557 atomic regions from SNP 159835 to 160435 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:01,358 DEBUG Processing 236/528 atomic regions from SNP 70591 to 71191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,397 DEBUG Processing 548/596 atomic regions from SNP 164184 to 164784 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:01,499 DEBUG Processing 534/557 atomic regions from SNP 160135 to 160735 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:01,618 DEBUG Processing 237/528 atomic regions from SNP 70891 to 71491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,663 DEBUG Processing 549/596 atomic regions from SNP 164484 to 165084 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:01,789 DEBUG Processing 535/557 atomic regions from SNP 160435 to 161035 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:01,907 DEBUG Processing 238/528 atomic regions from SNP 71191 to 71791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,946 DEBUG Processing 550/596 atomic regions from SNP 164784 to 165384 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:02,075 DEBUG Processing 536/557 atomic regions from SNP 160735 to 161335 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:02,199 DEBUG Processing 239/528 atomic regions from SNP 71491 to 72091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:02,246 DEBUG Processing 551/596 atomic regions from SNP 165084 to 165684 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:02,361 DEBUG Processing 537/557 atomic regions from SNP 161035 to 161635 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:02,471 DEBUG Processing 240/528 atomic regions from SNP 71791 to 72391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:02,513 DEBUG Processing 552/596 atomic regions from SNP 165384 to 165984 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:02,632 DEBUG Processing 538/557 atomic regions from SNP 161335 to 161935 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:02,754 DEBUG Processing 241/528 atomic regions from SNP 72091 to 72691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:02,804 DEBUG Processing 553/596 atomic regions from SNP 165684 to 166284 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:02,890 DEBUG Processing 539/557 atomic regions from SNP 161635 to 162235 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:03,044 DEBUG Processing 242/528 atomic regions from SNP 72391 to 72991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,094 DEBUG Processing 554/596 atomic regions from SNP 165984 to 166584 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:03,151 DEBUG Processing 540/557 atomic regions from SNP 161935 to 162535 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:03,322 DEBUG Processing 243/528 atomic regions from SNP 72691 to 73291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,363 DEBUG Processing 555/596 atomic regions from SNP 166284 to 166884 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:03,414 DEBUG Processing 541/557 atomic regions from SNP 162235 to 162835 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:03,599 DEBUG Processing 244/528 atomic regions from SNP 72991 to 73591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,634 DEBUG Processing 556/596 atomic regions from SNP 166584 to 167184 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:03,678 DEBUG Processing 542/557 atomic regions from SNP 162535 to 163135 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:03,892 DEBUG Processing 245/528 atomic regions from SNP 73291 to 73891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,903 DEBUG Processing 557/596 atomic regions from SNP 166884 to 167484 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:03,940 DEBUG Processing 543/557 atomic regions from SNP 162835 to 163435 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:04,173 DEBUG Processing 558/596 atomic regions from SNP 167184 to 167784 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:04,188 DEBUG Processing 246/528 atomic regions from SNP 73591 to 74191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:04,206 DEBUG Processing 544/557 atomic regions from SNP 163135 to 163735 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:04,442 DEBUG Processing 559/596 atomic regions from SNP 167484 to 168084 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:04,468 DEBUG Processing 247/528 atomic regions from SNP 73891 to 74491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:04,470 DEBUG Processing 545/557 atomic regions from SNP 163435 to 164035 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:04,710 DEBUG Processing 560/596 atomic regions from SNP 167784 to 168384 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:04,727 DEBUG Processing 248/528 atomic regions from SNP 74191 to 74791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:04,759 DEBUG Processing 546/557 atomic regions from SNP 163735 to 164335 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:04,979 DEBUG Processing 561/596 atomic regions from SNP 168084 to 168684 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:04,985 DEBUG Processing 249/528 atomic regions from SNP 74491 to 75091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:05,048 DEBUG Processing 547/557 atomic regions from SNP 164035 to 164635 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:05,270 DEBUG Processing 250/528 atomic regions from SNP 74791 to 75391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:05,274 DEBUG Processing 562/596 atomic regions from SNP 168384 to 168984 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:05,310 DEBUG Processing 548/557 atomic regions from SNP 164335 to 164935 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:05,335 DEBUG Subchromosome time: 219.58190909493715, subchromosome SNPs: 197661 2025-01-31 10:00:05,336 DEBUG Estimated BADs: [4.23, 1.06, 4.23, 2.12, 14.82, 2.12, 4.23, 1.06, 4.23, 2.12, 0.71, 4.23, 6.35, 2.12, 0.42, 2.12, 4.23, 21.17, 4.23, 2.12, 12.70, 0.71, 2.12] SNP counts: [4319, 19776, 2740, 3375, 591, 13042, 2329, 30726, 6883, 7768, 15349, 25620, 7999, 8316, 8412, 3050, 10292, 272, 1702, 8343, 5361, 4683, 6713] SNP IDs counts: [4319, 19776, 2740, 3375, 591, 13042, 2329, 30726, 6883, 7768, 15349, 25620, 7999, 8316, 8412, 3050, 10292, 272, 1702, 8343, 5361, 4683, 6713] Critical gap: 604529bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.41Mbp, 16.79Mbp, 18.55Mbp, 24.56Mbp, 24.87Mbp, 31.95Mbp, 33.22Mbp, 51.48Mbp, 55.43Mbp, 59.89Mbp, 69.12Mbp, 83.06Mbp, 87.27Mbp, 92.40Mbp, 97.50Mbp, 99.21Mbp, 104.93Mbp, 105.07Mbp, 105.97Mbp, 110.42Mbp, 113.23Mbp, 116.26Mbp, 120.13Mbp] 2025-01-31 10:00:05,336 DEBUG chr12 time: 219.58241850102786 s 2025-01-31 10:00:05,520 DEBUG chr12: Fitting background model for 23 segments 2025-01-31 10:00:05,553 DEBUG Processing 563/596 atomic regions from SNP 168684 to 169284 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:05,569 DEBUG Processing 251/528 atomic regions from SNP 75091 to 75691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:05,579 DEBUG Processing 549/557 atomic regions from SNP 164635 to 165235 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:05,836 DEBUG Processing 564/596 atomic regions from SNP 168984 to 169584 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:05,845 DEBUG Processing 550/557 atomic regions from SNP 164935 to 165535 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:05,863 DEBUG Processing 252/528 atomic regions from SNP 75391 to 75991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:06,118 DEBUG Subchromosome time: 255.09739621100016, subchromosome SNPs: 211704 2025-01-31 10:00:06,118 DEBUG Estimated BADs: [26.38, 5.28, 1.32, 0.26, 1.32, 0.26, 0.66, 2.64, 0.38, 2.64, 0.88, 0.33, 1.32, 21.10, 2.64, 5.28, 1.32, 18.46, 7.91, 2.64, 10.55, 5.28, 2.64, 5.28, 1.32, 0.33, 1.32, 5.28, 10.55, 0.88, 7.91, 2.64, 5.28, 2.64, 0.53, 1.32, 10.55, 5.28, 15.83, 5.28] SNP counts: [146, 6384, 4395, 3009, 2398, 5423, 5434, 9029, 7515, 9639, 5710, 7210, 11905, 194, 17864, 8428, 9979, 2017, 1968, 6432, 1519, 7364, 9037, 9098, 2288, 4307, 1535, 4980, 5188, 1223, 5364, 3713, 6207, 3897, 3292, 4897, 5013, 4561, 1174, 1968] SNP IDs counts: [146, 6384, 4395, 3009, 2398, 5423, 5434, 9029, 7515, 9639, 5710, 7210, 11905, 194, 17864, 8428, 9979, 2017, 1968, 6432, 1519, 7364, 9037, 9098, 2288, 4307, 1535, 4980, 5188, 1223, 5364, 3713, 6207, 3897, 3292, 4897, 5013, 4561, 1174, 1968] Critical gap: 593443bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.68Mbp, 9.25Mbp, 11.13Mbp, 12.52Mbp, 16.03Mbp, 19.29Mbp, 24.34Mbp, 28.89Mbp, 34.31Mbp, 37.56Mbp, 41.99Mbp, 48.77Mbp, 48.88Mbp, 58.90Mbp, 63.52Mbp, 68.97Mbp, 70.03Mbp, 71.11Mbp, 74.83Mbp, 75.65Mbp, 79.61Mbp, 84.56Mbp, 89.46Mbp, 90.73Mbp, 93.27Mbp, 94.13Mbp, 96.79Mbp, 99.54Mbp, 100.25Mbp, 103.11Mbp, 105.12Mbp, 108.49Mbp, 110.61Mbp, 112.47Mbp, 115.15Mbp, 117.83Mbp, 120.25Mbp, 120.89Mbp, 122.08Mbp] 2025-01-31 10:00:06,118 DEBUG chr11 time: 255.09792778803967 s 2025-01-31 10:00:06,119 DEBUG Processing 551/557 atomic regions from SNP 165235 to 165835 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:06,134 DEBUG Processing 565/596 atomic regions from SNP 169284 to 169884 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:06,154 DEBUG Processing 253/528 atomic regions from SNP 75691 to 76291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:06,327 DEBUG chr11: Fitting background model for 40 segments 2025-01-31 10:00:06,408 DEBUG Processing 552/557 atomic regions from SNP 165535 to 166135 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:06,446 DEBUG Processing 566/596 atomic regions from SNP 169584 to 170184 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:06,449 DEBUG Processing 254/528 atomic regions from SNP 75991 to 76591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:06,677 DEBUG Processing 553/557 atomic regions from SNP 165835 to 166435 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:06,706 DEBUG Processing 255/528 atomic regions from SNP 76291 to 76891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:06,749 DEBUG Processing 567/596 atomic regions from SNP 169884 to 170484 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:06,940 DEBUG Processing 554/557 atomic regions from SNP 166135 to 166735 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:06,980 DEBUG Processing 256/528 atomic regions from SNP 76591 to 77191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:07,049 DEBUG Processing 568/596 atomic regions from SNP 170184 to 170784 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:07,201 DEBUG Processing 555/557 atomic regions from SNP 166435 to 167035 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:07,240 DEBUG Processing 257/528 atomic regions from SNP 76891 to 77491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:07,346 DEBUG Processing 569/596 atomic regions from SNP 170484 to 171084 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:07,463 DEBUG Processing 556/557 atomic regions from SNP 166735 to 167335 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:07,494 DEBUG Processing 258/528 atomic regions from SNP 77191 to 77791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:07,644 DEBUG Processing 570/596 atomic regions from SNP 170784 to 171384 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:07,737 DEBUG Processing 557/557 atomic regions from SNP 167035 to 167635 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:07,751 DEBUG Processing 259/528 atomic regions from SNP 77491 to 78091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:07,941 DEBUG Processing 571/596 atomic regions from SNP 171084 to 171684 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:07,958 DEBUG Unique SNPs positions in subchromosome 1: 167636 2025-01-31 10:00:08,011 DEBUG Processing 260/528 atomic regions from SNP 77791 to 78391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:08,247 DEBUG Processing 572/596 atomic regions from SNP 171384 to 171984 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:08,268 DEBUG Processing 261/528 atomic regions from SNP 78091 to 78691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:08,526 DEBUG Processing 262/528 atomic regions from SNP 78391 to 78991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:08,531 DEBUG Processing 573/596 atomic regions from SNP 171684 to 172284 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:08,788 DEBUG Processing 263/528 atomic regions from SNP 78691 to 79291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:08,827 DEBUG Processing 574/596 atomic regions from SNP 171984 to 172584 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:09,051 DEBUG Processing 264/528 atomic regions from SNP 78991 to 79591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:09,130 DEBUG Processing 575/596 atomic regions from SNP 172284 to 172884 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:09,302 DEBUG Processing 265/528 atomic regions from SNP 79291 to 79891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:09,428 DEBUG Processing 576/596 atomic regions from SNP 172584 to 173184 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:09,552 DEBUG Processing 266/528 atomic regions from SNP 79591 to 80191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:09,726 DEBUG Processing 577/596 atomic regions from SNP 172884 to 173484 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:09,801 DEBUG Processing 267/528 atomic regions from SNP 79891 to 80491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,020 DEBUG Processing 578/596 atomic regions from SNP 173184 to 173784 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:10,053 DEBUG Processing 268/528 atomic regions from SNP 80191 to 80791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,297 DEBUG Processing 579/596 atomic regions from SNP 173484 to 174084 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:10,308 DEBUG Processing 269/528 atomic regions from SNP 80491 to 81091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,567 DEBUG Processing 270/528 atomic regions from SNP 80791 to 81391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,568 DEBUG Processing 580/596 atomic regions from SNP 173784 to 174384 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:10,829 DEBUG Processing 271/528 atomic regions from SNP 81091 to 81691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,852 DEBUG Processing 581/596 atomic regions from SNP 174084 to 174684 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:11,087 DEBUG Processing 272/528 atomic regions from SNP 81391 to 81991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:11,151 DEBUG Processing 582/596 atomic regions from SNP 174384 to 174984 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:11,343 DEBUG Processing 273/528 atomic regions from SNP 81691 to 82291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:11,418 DEBUG Processing 583/596 atomic regions from SNP 174684 to 175284 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:11,594 DEBUG Processing 274/528 atomic regions from SNP 81991 to 82591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:11,677 DEBUG Processing 584/596 atomic regions from SNP 174984 to 175584 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:11,844 DEBUG Processing 275/528 atomic regions from SNP 82291 to 82891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:11,938 DEBUG Processing 585/596 atomic regions from SNP 175284 to 175884 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:12,097 DEBUG Processing 276/528 atomic regions from SNP 82591 to 83191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:12,219 DEBUG Processing 586/596 atomic regions from SNP 175584 to 176184 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:12,351 DEBUG Processing 277/528 atomic regions from SNP 82891 to 83491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:12,522 DEBUG Processing 587/596 atomic regions from SNP 175884 to 176484 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:12,602 DEBUG Processing 278/528 atomic regions from SNP 83191 to 83791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:12,822 DEBUG Processing 588/596 atomic regions from SNP 176184 to 176784 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:12,854 DEBUG Processing 279/528 atomic regions from SNP 83491 to 84091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:13,111 DEBUG Processing 280/528 atomic regions from SNP 83791 to 84391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:13,124 DEBUG Processing 589/596 atomic regions from SNP 176484 to 177084 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:13,366 DEBUG Processing 281/528 atomic regions from SNP 84091 to 84691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:13,423 DEBUG Processing 590/596 atomic regions from SNP 176784 to 177384 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:13,581 DEBUG Subchromosome time: 176.1827183420537, subchromosome SNPs: 167636 2025-01-31 10:00:13,582 DEBUG Estimated BADs: [7.21, 1.20, 4.80, 2.40, 9.61, 0.60, 4.80, 0.80, 4.80, 0.80, 2.40, 0.80, 2.40, 0.60, 2.40, 0.34, 1.20, 9.61, 4.80] SNP counts: [3709, 5717, 10931, 4441, 3587, 868, 6993, 10204, 18367, 6013, 4865, 6822, 3022, 7964, 6782, 3817, 48332, 8439, 6763] SNP IDs counts: [3709, 5717, 10931, 4441, 3587, 868, 6993, 10204, 18367, 6013, 4865, 6822, 3022, 7964, 6782, 3817, 48332, 8439, 6763] Critical gap: 532801bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 5.44Mbp, 8.57Mbp, 14.48Mbp, 17.12Mbp, 19.03Mbp, 19.63Mbp, 23.49Mbp, 29.21Mbp, 39.06Mbp, 42.45Mbp, 45.17Mbp, 49.25Mbp, 50.89Mbp, 55.82Mbp, 59.77Mbp, 62.21Mbp, 90.02Mbp, 94.49Mbp, 98.21Mbp] 2025-01-31 10:00:13,582 DEBUG chr16 time: 176.18318527098745 s 2025-01-31 10:00:13,618 DEBUG Processing 282/528 atomic regions from SNP 84391 to 84991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:13,710 DEBUG Processing 591/596 atomic regions from SNP 177084 to 177684 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:13,716 DEBUG chr16: Fitting background model for 19 segments 2025-01-31 10:00:13,872 DEBUG Processing 283/528 atomic regions from SNP 84691 to 85291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:13,981 DEBUG Processing 592/596 atomic regions from SNP 177384 to 177984 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:14,126 DEBUG Processing 284/528 atomic regions from SNP 84991 to 85591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:14,271 DEBUG Processing 593/596 atomic regions from SNP 177684 to 178284 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:14,379 DEBUG Processing 285/528 atomic regions from SNP 85291 to 85891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:14,567 DEBUG Processing 594/596 atomic regions from SNP 177984 to 178584 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:14,636 DEBUG Processing 286/528 atomic regions from SNP 85591 to 86191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:14,874 DEBUG Processing 595/596 atomic regions from SNP 178284 to 178884 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:14,898 DEBUG Processing 287/528 atomic regions from SNP 85891 to 86491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:15,163 DEBUG Processing 596/596 atomic regions from SNP 178584 to 179184 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:15,168 DEBUG Processing 288/528 atomic regions from SNP 86191 to 86791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:15,373 DEBUG Unique SNPs positions in subchromosome 1: 179185 2025-01-31 10:00:15,441 DEBUG Processing 289/528 atomic regions from SNP 86491 to 87091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:15,709 DEBUG Processing 290/528 atomic regions from SNP 86791 to 87391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:15,979 DEBUG Processing 291/528 atomic regions from SNP 87091 to 87691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:16,238 DEBUG Processing 292/528 atomic regions from SNP 87391 to 87991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:16,508 DEBUG Processing 293/528 atomic regions from SNP 87691 to 88291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:16,770 DEBUG Processing 294/528 atomic regions from SNP 87991 to 88591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:17,027 DEBUG Processing 295/528 atomic regions from SNP 88291 to 88891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:17,281 DEBUG Processing 296/528 atomic regions from SNP 88591 to 89191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:17,543 DEBUG Processing 297/528 atomic regions from SNP 88891 to 89491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:17,798 DEBUG Processing 298/528 atomic regions from SNP 89191 to 89791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:18,059 DEBUG Processing 299/528 atomic regions from SNP 89491 to 90091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:18,347 DEBUG Processing 300/528 atomic regions from SNP 89791 to 90391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:18,645 DEBUG Processing 301/528 atomic regions from SNP 90091 to 90691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:18,939 DEBUG Processing 302/528 atomic regions from SNP 90391 to 90991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:19,225 DEBUG Processing 303/528 atomic regions from SNP 90691 to 91291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:19,517 DEBUG Processing 304/528 atomic regions from SNP 90991 to 91591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:19,820 DEBUG Processing 305/528 atomic regions from SNP 91291 to 91891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,116 DEBUG Processing 306/528 atomic regions from SNP 91591 to 92191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,405 DEBUG Processing 307/528 atomic regions from SNP 91891 to 92491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,694 DEBUG Processing 308/528 atomic regions from SNP 92191 to 92791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,968 DEBUG Processing 309/528 atomic regions from SNP 92491 to 93091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:21,045 DEBUG Subchromosome time: 191.8452074599918, subchromosome SNPs: 179185 2025-01-31 10:00:21,046 DEBUG Estimated BADs: [0.88, 2.63, 0.66, 10.52, 1.32, 2.63, 10.52, 2.63, 18.42, 2.63, 0.53, 1.32, 5.26, 1.32, 7.89, 0.88, 5.26, 23.68, 13.16, 5.26, 2.63, 10.52, 1.32, 5.26, 10.52, 1.32] SNP counts: [3350, 14909, 23689, 235, 11935, 3111, 1463, 2495, 487, 11413, 9676, 12021, 2598, 13344, 965, 9998, 5462, 1756, 12582, 3913, 5785, 2014, 11784, 4160, 9227, 813] SNP IDs counts: [3350, 14909, 23689, 235, 11935, 3111, 1463, 2495, 487, 11413, 9676, 12021, 2598, 13344, 965, 9998, 5462, 1756, 12582, 3913, 5785, 2014, 11784, 4160, 9227, 813] Critical gap: 547325bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.09Mbp, 13.46Mbp, 27.41Mbp, 27.53Mbp, 34.37Mbp, 36.13Mbp, 36.91Mbp, 38.27Mbp, 38.53Mbp, 45.09Mbp, 50.86Mbp, 57.69Mbp, 59.06Mbp, 66.67Mbp, 67.18Mbp, 72.85Mbp, 75.84Mbp, 76.76Mbp, 83.58Mbp, 85.65Mbp, 88.70Mbp, 89.80Mbp, 96.26Mbp, 98.50Mbp, 103.38Mbp, 104.04Mbp] 2025-01-31 10:00:21,046 DEBUG chr15 time: 191.84570895403158 s 2025-01-31 10:00:21,198 DEBUG chr15: Fitting background model for 26 segments 2025-01-31 10:00:21,232 DEBUG Processing 310/528 atomic regions from SNP 92791 to 93391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:21,501 DEBUG Processing 311/528 atomic regions from SNP 93091 to 93691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:21,766 DEBUG Processing 312/528 atomic regions from SNP 93391 to 93991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:22,033 DEBUG Processing 313/528 atomic regions from SNP 93691 to 94291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:22,298 DEBUG Processing 314/528 atomic regions from SNP 93991 to 94591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:22,562 DEBUG Processing 315/528 atomic regions from SNP 94291 to 94891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:22,827 DEBUG Processing 316/528 atomic regions from SNP 94591 to 95191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:23,091 DEBUG Processing 317/528 atomic regions from SNP 94891 to 95491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:23,360 DEBUG Processing 318/528 atomic regions from SNP 95191 to 95791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:23,629 DEBUG Processing 319/528 atomic regions from SNP 95491 to 96091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:23,902 DEBUG Processing 320/528 atomic regions from SNP 95791 to 96391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:24,170 DEBUG Processing 321/528 atomic regions from SNP 96091 to 96691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:24,434 DEBUG Processing 322/528 atomic regions from SNP 96391 to 96991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:24,691 DEBUG Processing 323/528 atomic regions from SNP 96691 to 97291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:24,948 DEBUG Processing 324/528 atomic regions from SNP 96991 to 97591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:25,211 DEBUG Processing 325/528 atomic regions from SNP 97291 to 97891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:25,475 DEBUG Processing 326/528 atomic regions from SNP 97591 to 98191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:25,737 DEBUG Processing 327/528 atomic regions from SNP 97891 to 98491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:25,996 DEBUG Processing 328/528 atomic regions from SNP 98191 to 98791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:26,262 DEBUG Processing 329/528 atomic regions from SNP 98491 to 99091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:26,523 DEBUG Processing 330/528 atomic regions from SNP 98791 to 99391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:26,783 DEBUG Processing 331/528 atomic regions from SNP 99091 to 99691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:27,041 DEBUG Processing 332/528 atomic regions from SNP 99391 to 99991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:27,298 DEBUG Processing 333/528 atomic regions from SNP 99691 to 100291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:27,556 DEBUG Processing 334/528 atomic regions from SNP 99991 to 100591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:27,814 DEBUG Processing 335/528 atomic regions from SNP 100291 to 100891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:28,071 DEBUG Processing 336/528 atomic regions from SNP 100591 to 101191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:28,328 DEBUG Processing 337/528 atomic regions from SNP 100891 to 101491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:28,586 DEBUG Processing 338/528 atomic regions from SNP 101191 to 101791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:28,844 DEBUG Processing 339/528 atomic regions from SNP 101491 to 102091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:29,101 DEBUG Processing 340/528 atomic regions from SNP 101791 to 102391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:29,359 DEBUG Processing 341/528 atomic regions from SNP 102091 to 102691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:29,616 DEBUG Processing 342/528 atomic regions from SNP 102391 to 102991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:29,873 DEBUG Processing 343/528 atomic regions from SNP 102691 to 103291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:30,135 DEBUG Processing 344/528 atomic regions from SNP 102991 to 103591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:30,398 DEBUG Processing 345/528 atomic regions from SNP 103291 to 103891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:30,662 DEBUG Processing 346/528 atomic regions from SNP 103591 to 104191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:30,926 DEBUG Processing 347/528 atomic regions from SNP 103891 to 104491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:31,182 DEBUG Processing 348/528 atomic regions from SNP 104191 to 104791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:31,443 DEBUG Processing 349/528 atomic regions from SNP 104491 to 105091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:31,711 DEBUG Processing 350/528 atomic regions from SNP 104791 to 105391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:31,980 DEBUG Processing 351/528 atomic regions from SNP 105091 to 105691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:32,247 DEBUG Processing 352/528 atomic regions from SNP 105391 to 105991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:32,512 DEBUG Processing 353/528 atomic regions from SNP 105691 to 106291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:32,782 DEBUG Processing 354/528 atomic regions from SNP 105991 to 106591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:33,045 DEBUG Processing 355/528 atomic regions from SNP 106291 to 106891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:33,309 DEBUG Processing 356/528 atomic regions from SNP 106591 to 107191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:33,579 DEBUG Processing 357/528 atomic regions from SNP 106891 to 107491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:33,862 DEBUG Processing 358/528 atomic regions from SNP 107191 to 107791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:34,148 DEBUG Processing 359/528 atomic regions from SNP 107491 to 108091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:34,431 DEBUG Processing 360/528 atomic regions from SNP 107791 to 108391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:34,693 DEBUG Processing 361/528 atomic regions from SNP 108091 to 108691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:34,954 DEBUG Processing 362/528 atomic regions from SNP 108391 to 108991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:35,217 DEBUG Processing 363/528 atomic regions from SNP 108691 to 109291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:35,474 DEBUG Processing 364/528 atomic regions from SNP 108991 to 109591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:35,732 DEBUG Processing 365/528 atomic regions from SNP 109291 to 109891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:35,991 DEBUG Processing 366/528 atomic regions from SNP 109591 to 110191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:36,238 DEBUG Processing 367/528 atomic regions from SNP 109891 to 110491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:36,482 DEBUG Processing 368/528 atomic regions from SNP 110191 to 110791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:36,720 DEBUG Processing 369/528 atomic regions from SNP 110491 to 111091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:36,967 DEBUG Processing 370/528 atomic regions from SNP 110791 to 111391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:37,224 DEBUG Processing 371/528 atomic regions from SNP 111091 to 111691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:37,477 DEBUG Processing 372/528 atomic regions from SNP 111391 to 111991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:37,731 DEBUG Processing 373/528 atomic regions from SNP 111691 to 112291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:37,990 DEBUG Processing 374/528 atomic regions from SNP 111991 to 112591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:38,246 DEBUG Processing 375/528 atomic regions from SNP 112291 to 112891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:38,457 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 10:00:38,501 DEBUG Processing 376/528 atomic regions from SNP 112591 to 113191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:38,756 DEBUG Processing 377/528 atomic regions from SNP 112891 to 113491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:39,004 DEBUG Processing 378/528 atomic regions from SNP 113191 to 113791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:39,247 DEBUG Processing 379/528 atomic regions from SNP 113491 to 114091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:39,489 DEBUG Processing 380/528 atomic regions from SNP 113791 to 114391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:39,732 DEBUG Processing 381/528 atomic regions from SNP 114091 to 114691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:39,970 DEBUG Processing 382/528 atomic regions from SNP 114391 to 114991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:40,223 DEBUG Processing 383/528 atomic regions from SNP 114691 to 115291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:40,471 DEBUG Processing 384/528 atomic regions from SNP 114991 to 115591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:40,714 DEBUG Processing 385/528 atomic regions from SNP 115291 to 115891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:40,956 DEBUG Processing 386/528 atomic regions from SNP 115591 to 116191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:41,194 DEBUG Processing 387/528 atomic regions from SNP 115891 to 116491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:41,451 DEBUG Processing 388/528 atomic regions from SNP 116191 to 116791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:41,709 DEBUG Processing 389/528 atomic regions from SNP 116491 to 117091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:41,969 DEBUG Processing 390/528 atomic regions from SNP 116791 to 117391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:42,224 DEBUG Processing 391/528 atomic regions from SNP 117091 to 117691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:42,473 DEBUG Processing 392/528 atomic regions from SNP 117391 to 117991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:42,729 DEBUG Processing 393/528 atomic regions from SNP 117691 to 118291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:42,976 DEBUG Processing 394/528 atomic regions from SNP 117991 to 118591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:43,230 DEBUG Processing 395/528 atomic regions from SNP 118291 to 118891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:43,486 DEBUG Processing 396/528 atomic regions from SNP 118591 to 119191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:43,741 DEBUG Processing 397/528 atomic regions from SNP 118891 to 119491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:43,993 DEBUG Processing 398/528 atomic regions from SNP 119191 to 119791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:44,234 DEBUG Processing 399/528 atomic regions from SNP 119491 to 120091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:44,490 DEBUG Processing 400/528 atomic regions from SNP 119791 to 120391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:44,731 DEBUG Processing 401/528 atomic regions from SNP 120091 to 120691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:44,983 DEBUG Processing 402/528 atomic regions from SNP 120391 to 120991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:45,245 DEBUG Processing 403/528 atomic regions from SNP 120691 to 121291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:45,505 DEBUG Processing 404/528 atomic regions from SNP 120991 to 121591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:45,766 DEBUG Processing 405/528 atomic regions from SNP 121291 to 121891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:46,024 DEBUG Processing 406/528 atomic regions from SNP 121591 to 122191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:46,292 DEBUG Processing 407/528 atomic regions from SNP 121891 to 122491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:46,552 DEBUG Processing 408/528 atomic regions from SNP 122191 to 122791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:46,842 DEBUG Processing 409/528 atomic regions from SNP 122491 to 123091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:47,113 DEBUG Processing 410/528 atomic regions from SNP 122791 to 123391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:47,367 DEBUG Processing 411/528 atomic regions from SNP 123091 to 123691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:47,625 DEBUG Processing 412/528 atomic regions from SNP 123391 to 123991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:47,873 DEBUG Processing 413/528 atomic regions from SNP 123691 to 124291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:48,120 DEBUG Processing 414/528 atomic regions from SNP 123991 to 124591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:48,366 DEBUG Processing 415/528 atomic regions from SNP 124291 to 124891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:48,634 DEBUG Processing 416/528 atomic regions from SNP 124591 to 125191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:48,878 DEBUG Processing 417/528 atomic regions from SNP 124891 to 125491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:49,119 DEBUG Processing 418/528 atomic regions from SNP 125191 to 125791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:49,362 DEBUG Processing 419/528 atomic regions from SNP 125491 to 126091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:49,603 DEBUG Processing 420/528 atomic regions from SNP 125791 to 126391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:49,700 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 10:00:49,730 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 10:00:49,865 DEBUG Processing 421/528 atomic regions from SNP 126091 to 126691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:50,088 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 10:00:50,134 DEBUG Processing 422/528 atomic regions from SNP 126391 to 126991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:50,399 DEBUG Processing 423/528 atomic regions from SNP 126691 to 127291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:50,649 DEBUG Processing 424/528 atomic regions from SNP 126991 to 127591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:50,897 DEBUG Processing 425/528 atomic regions from SNP 127291 to 127891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:51,136 DEBUG Processing 426/528 atomic regions from SNP 127591 to 128191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:51,369 DEBUG Processing 427/528 atomic regions from SNP 127891 to 128491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:51,618 DEBUG Processing 428/528 atomic regions from SNP 128191 to 128791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:51,872 DEBUG Processing 429/528 atomic regions from SNP 128491 to 129091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:52,113 DEBUG Processing 430/528 atomic regions from SNP 128791 to 129391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:52,365 DEBUG Processing 431/528 atomic regions from SNP 129091 to 129691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:52,625 DEBUG Processing 432/528 atomic regions from SNP 129391 to 129991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:52,807 DEBUG chrY total SNP count: 94 2025-01-31 10:00:52,807 DEBUG chrY length: 91744698 2025-01-31 10:00:52,808 DEBUG ----------------------------------------- 2025-01-31 10:00:52,808 INFO Processing SNPs in chrY 2025-01-31 10:00:52,879 DEBUG Processing 433/528 atomic regions from SNP 129691 to 130291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:53,139 DEBUG Processing 434/528 atomic regions from SNP 129991 to 130591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:53,399 DEBUG Processing 435/528 atomic regions from SNP 130291 to 130891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:53,659 DEBUG Processing 436/528 atomic regions from SNP 130591 to 131191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:53,924 DEBUG Processing 437/528 atomic regions from SNP 130891 to 131491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:54,187 DEBUG Processing 438/528 atomic regions from SNP 131191 to 131791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:54,451 DEBUG Processing 439/528 atomic regions from SNP 131491 to 132091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:54,705 DEBUG Processing 440/528 atomic regions from SNP 131791 to 132391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:54,968 DEBUG Processing 441/528 atomic regions from SNP 132091 to 132691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:55,252 DEBUG Processing 442/528 atomic regions from SNP 132391 to 132991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:55,526 DEBUG Processing 443/528 atomic regions from SNP 132691 to 133291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:55,784 DEBUG Processing 444/528 atomic regions from SNP 132991 to 133591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:55,801 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 10:00:56,052 DEBUG Processing 445/528 atomic regions from SNP 133291 to 133891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:56,316 DEBUG Processing 446/528 atomic regions from SNP 133591 to 134191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:56,576 DEBUG Processing 447/528 atomic regions from SNP 133891 to 134491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:56,830 DEBUG Processing 448/528 atomic regions from SNP 134191 to 134791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:57,087 DEBUG Processing 449/528 atomic regions from SNP 134491 to 135091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:57,353 DEBUG Processing 450/528 atomic regions from SNP 134791 to 135391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:57,616 DEBUG Processing 451/528 atomic regions from SNP 135091 to 135691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:57,880 DEBUG Processing 452/528 atomic regions from SNP 135391 to 135991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:58,126 DEBUG Processing 453/528 atomic regions from SNP 135691 to 136291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:58,370 DEBUG Processing 454/528 atomic regions from SNP 135991 to 136591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:58,635 DEBUG Processing 455/528 atomic regions from SNP 136291 to 136891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:58,892 DEBUG Processing 456/528 atomic regions from SNP 136591 to 137191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:59,152 DEBUG Processing 457/528 atomic regions from SNP 136891 to 137491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:59,415 DEBUG Processing 458/528 atomic regions from SNP 137191 to 137791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:59,669 DEBUG Processing 459/528 atomic regions from SNP 137491 to 138091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:59,921 DEBUG Processing 460/528 atomic regions from SNP 137791 to 138391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:00,174 DEBUG Processing 461/528 atomic regions from SNP 138091 to 138691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:00,426 DEBUG Processing 462/528 atomic regions from SNP 138391 to 138991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:00,679 DEBUG Processing 463/528 atomic regions from SNP 138691 to 139291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:00,952 DEBUG Processing 464/528 atomic regions from SNP 138991 to 139591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:01,228 DEBUG Processing 465/528 atomic regions from SNP 139291 to 139891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:01,495 DEBUG Processing 466/528 atomic regions from SNP 139591 to 140191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:01,778 DEBUG Processing 467/528 atomic regions from SNP 139891 to 140491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:02,049 DEBUG Processing 468/528 atomic regions from SNP 140191 to 140791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:02,300 DEBUG Processing 469/528 atomic regions from SNP 140491 to 141091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:02,552 DEBUG Processing 470/528 atomic regions from SNP 140791 to 141391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:02,804 DEBUG Processing 471/528 atomic regions from SNP 141091 to 141691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:03,088 DEBUG Processing 472/528 atomic regions from SNP 141391 to 141991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:03,361 DEBUG Processing 473/528 atomic regions from SNP 141691 to 142291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:03,617 DEBUG Processing 474/528 atomic regions from SNP 141991 to 142591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:03,872 DEBUG Processing 475/528 atomic regions from SNP 142291 to 142891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:04,128 DEBUG Processing 476/528 atomic regions from SNP 142591 to 143191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:04,389 DEBUG Processing 477/528 atomic regions from SNP 142891 to 143491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:04,634 DEBUG Processing 478/528 atomic regions from SNP 143191 to 143791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:04,878 DEBUG Processing 479/528 atomic regions from SNP 143491 to 144091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:05,140 DEBUG Processing 480/528 atomic regions from SNP 143791 to 144391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:05,398 DEBUG Processing 481/528 atomic regions from SNP 144091 to 144691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:05,642 DEBUG Processing 482/528 atomic regions from SNP 144391 to 144991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:05,889 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 10:01:05,896 DEBUG Processing 483/528 atomic regions from SNP 144691 to 145291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:05,921 DEBUG chr18: Signal quantile: 0.992. signal threshold: 14. Best RMSEA: 0.022 2025-01-31 10:01:06,161 DEBUG Processing 484/528 atomic regions from SNP 144991 to 145591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:06,426 DEBUG Processing 485/528 atomic regions from SNP 145291 to 145891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:06,693 DEBUG Processing 486/528 atomic regions from SNP 145591 to 146191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:06,976 DEBUG Processing 487/528 atomic regions from SNP 145891 to 146491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:07,230 DEBUG Processing 488/528 atomic regions from SNP 146191 to 146791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:07,473 DEBUG Processing 489/528 atomic regions from SNP 146491 to 147091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:07,716 DEBUG Processing 490/528 atomic regions from SNP 146791 to 147391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:07,979 DEBUG Processing 491/528 atomic regions from SNP 147091 to 147691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:08,241 DEBUG Processing 492/528 atomic regions from SNP 147391 to 147991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:08,488 DEBUG Processing 493/528 atomic regions from SNP 147691 to 148291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:08,758 DEBUG Processing 494/528 atomic regions from SNP 147991 to 148591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:09,013 DEBUG Processing 495/528 atomic regions from SNP 148291 to 148891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:09,053 DEBUG chr18 total SNP count: 154649 2025-01-31 10:01:09,054 DEBUG chr18 length: 90702639 2025-01-31 10:01:09,054 DEBUG ----------------------------------------- 2025-01-31 10:01:09,054 INFO Processing SNPs in chr18 2025-01-31 10:01:09,203 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 154649)] 2025-01-31 10:01:09,274 DEBUG Processing 496/528 atomic regions from SNP 148591 to 149191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:09,304 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 10:01:09,532 DEBUG Processing 497/528 atomic regions from SNP 148891 to 149491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:09,789 DEBUG Processing 498/528 atomic regions from SNP 149191 to 149791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:10,054 DEBUG Processing 499/528 atomic regions from SNP 149491 to 150091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:10,315 DEBUG Processing 500/528 atomic regions from SNP 149791 to 150391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:10,567 DEBUG Processing 501/528 atomic regions from SNP 150091 to 150691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:10,828 DEBUG Processing 502/528 atomic regions from SNP 150391 to 150991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:11,081 DEBUG Processing 503/528 atomic regions from SNP 150691 to 151291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:11,338 DEBUG Processing 504/528 atomic regions from SNP 150991 to 151591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:11,594 DEBUG Processing 505/528 atomic regions from SNP 151291 to 151891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:11,850 DEBUG Processing 506/528 atomic regions from SNP 151591 to 152191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:12,107 DEBUG Processing 507/528 atomic regions from SNP 151891 to 152491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:12,364 DEBUG Processing 508/528 atomic regions from SNP 152191 to 152791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:12,624 DEBUG Processing 509/528 atomic regions from SNP 152491 to 153091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:12,881 DEBUG Processing 510/528 atomic regions from SNP 152791 to 153391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:13,137 DEBUG Processing 511/528 atomic regions from SNP 153091 to 153691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:13,395 DEBUG Processing 512/528 atomic regions from SNP 153391 to 153991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:13,654 DEBUG Processing 513/528 atomic regions from SNP 153691 to 154291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:13,913 DEBUG Processing 514/528 atomic regions from SNP 153991 to 154591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:14,177 DEBUG Processing 515/528 atomic regions from SNP 154291 to 154891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:14,438 DEBUG Processing 516/528 atomic regions from SNP 154591 to 155191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:14,701 DEBUG Processing 517/528 atomic regions from SNP 154891 to 155491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:14,947 DEBUG Processing 518/528 atomic regions from SNP 155191 to 155791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:15,188 DEBUG Processing 519/528 atomic regions from SNP 155491 to 156091 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:15,428 DEBUG Processing 520/528 atomic regions from SNP 155791 to 156391 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:15,512 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 10:01:15,530 DEBUG chr19: Signal quantile: 0.985. signal threshold: 16. Best RMSEA: 0.015 2025-01-31 10:01:15,685 DEBUG Processing 521/528 atomic regions from SNP 156091 to 156691 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:15,946 DEBUG Processing 522/528 atomic regions from SNP 156391 to 156991 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:16,208 DEBUG Processing 523/528 atomic regions from SNP 156691 to 157291 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:16,468 DEBUG Processing 524/528 atomic regions from SNP 156991 to 157591 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:16,718 DEBUG Processing 525/528 atomic regions from SNP 157291 to 157891 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:16,977 DEBUG Processing 526/528 atomic regions from SNP 157591 to 158191 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:17,227 DEBUG Processing 527/528 atomic regions from SNP 157891 to 158491 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:17,482 DEBUG Processing 528/528 atomic regions from SNP 158191 to 158791 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:17,529 DEBUG chr19 total SNP count: 102710 2025-01-31 10:01:17,529 DEBUG chr19 length: 61431566 2025-01-31 10:01:17,529 DEBUG ----------------------------------------- 2025-01-31 10:01:17,529 INFO Processing SNPs in chr19 2025-01-31 10:01:17,630 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 102710)] 2025-01-31 10:01:17,665 DEBUG Unique SNPs positions in subchromosome 1: 158792 2025-01-31 10:01:17,696 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 10:01:26,783 DEBUG Subchromosome time: 167.7925787899876, subchromosome SNPs: 158792 2025-01-31 10:01:26,783 DEBUG Estimated BADs: [2.59, 0.86, 10.35, 5.17, 12.93, 0.86, 2.59, 10.35, 1.29, 15.52, 0.65, 2.59, 1.29, 5.17, 2.59, 0.86, 2.59, 0.43, 5.17, 0.43] SNP counts: [21166, 11270, 10965, 8106, 4471, 12912, 2368, 5748, 12737, 2703, 9144, 6901, 6897, 2732, 5775, 4673, 6319, 2686, 11425, 9794] SNP IDs counts: [21166, 11270, 10965, 8106, 4471, 12912, 2368, 5748, 12737, 2703, 9144, 6901, 6897, 2732, 5775, 4673, 6319, 2686, 11425, 9794] Critical gap: 529421bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.01Mbp, 23.53Mbp, 29.32Mbp, 33.78Mbp, 36.32Mbp, 44.28Mbp, 45.55Mbp, 48.60Mbp, 55.94Mbp, 57.36Mbp, 62.75Mbp, 66.59Mbp, 70.47Mbp, 71.92Mbp, 75.08Mbp, 77.79Mbp, 81.22Mbp, 82.84Mbp, 88.92Mbp, 94.99Mbp] 2025-01-31 10:01:26,783 DEBUG chr17 time: 167.79298552696127 s 2025-01-31 10:01:26,917 DEBUG chr17: Fitting background model for 20 segments 2025-01-31 10:01:27,641 DEBUG Segmenting atomic regions: 2025-01-31 10:01:27,706 DEBUG Processing 1/514 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:27,960 DEBUG Processing 2/514 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:28,218 DEBUG Processing 3/514 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:28,483 DEBUG Processing 4/514 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:28,746 DEBUG Processing 5/514 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:29,009 DEBUG Processing 6/514 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:29,267 DEBUG Processing 7/514 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:29,531 DEBUG Processing 8/514 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:29,795 DEBUG Processing 9/514 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:29,898 DEBUG Segmenting atomic regions: 2025-01-31 10:01:29,942 DEBUG Processing 1/341 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:30,071 DEBUG Processing 10/514 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:30,203 DEBUG Processing 2/341 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:30,337 DEBUG Processing 11/514 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:30,453 DEBUG Processing 3/341 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:30,617 DEBUG Processing 12/514 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:30,716 DEBUG Processing 4/341 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:30,880 DEBUG Processing 13/514 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:30,973 DEBUG Processing 5/341 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:31,150 DEBUG Processing 14/514 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:31,248 DEBUG Processing 6/341 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:31,415 DEBUG Processing 15/514 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:31,525 DEBUG Processing 7/341 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:31,677 DEBUG Processing 16/514 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:31,798 DEBUG Processing 8/341 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:31,940 DEBUG Processing 17/514 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:32,059 DEBUG Processing 9/341 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:32,229 DEBUG Processing 18/514 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:32,322 DEBUG Processing 10/341 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:32,493 DEBUG Processing 19/514 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:32,586 DEBUG Processing 11/341 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:32,761 DEBUG Processing 20/514 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:32,851 DEBUG Processing 12/341 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:33,026 DEBUG Processing 21/514 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:33,129 DEBUG Processing 13/341 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:33,287 DEBUG Processing 22/514 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:33,390 DEBUG Processing 14/341 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:33,550 DEBUG Processing 23/514 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:33,659 DEBUG Processing 15/341 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:33,812 DEBUG Processing 24/514 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:33,934 DEBUG Processing 16/341 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:34,075 DEBUG Processing 25/514 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:34,209 DEBUG Processing 17/341 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:34,336 DEBUG Processing 26/514 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:34,485 DEBUG Processing 18/341 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:34,598 DEBUG Processing 27/514 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:34,762 DEBUG Processing 19/341 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:34,861 DEBUG Processing 28/514 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:35,042 DEBUG Processing 20/341 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:35,124 DEBUG Processing 29/514 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:35,316 DEBUG Processing 21/341 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:35,389 DEBUG Processing 30/514 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:35,563 DEBUG Processing 22/341 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:35,652 DEBUG Processing 31/514 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:35,823 DEBUG Processing 23/341 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:35,915 DEBUG Processing 32/514 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:36,094 DEBUG Processing 24/341 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:36,179 DEBUG Processing 33/514 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:36,373 DEBUG Processing 25/341 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:36,444 DEBUG Processing 34/514 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:36,643 DEBUG Processing 26/341 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:36,710 DEBUG Processing 35/514 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:36,902 DEBUG Processing 27/341 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:36,975 DEBUG Processing 36/514 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:37,139 DEBUG Processing 28/341 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:37,239 DEBUG Processing 37/514 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:37,379 DEBUG Processing 29/341 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:37,505 DEBUG Processing 38/514 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:37,618 DEBUG Processing 30/341 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:37,768 DEBUG Processing 39/514 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:37,855 DEBUG Processing 31/341 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:38,034 DEBUG Processing 40/514 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:38,093 DEBUG Processing 32/341 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:38,300 DEBUG Processing 41/514 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:38,361 DEBUG Processing 33/341 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:38,567 DEBUG Processing 42/514 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:38,640 DEBUG Processing 34/341 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:38,832 DEBUG Processing 43/514 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:38,915 DEBUG Processing 35/341 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:39,107 DEBUG Processing 44/514 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:39,161 DEBUG Processing 36/341 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:39,374 DEBUG Processing 45/514 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:39,400 DEBUG Processing 37/341 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:39,641 DEBUG Processing 38/341 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:39,643 DEBUG Processing 46/514 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:39,912 DEBUG Processing 47/514 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:39,919 DEBUG Processing 39/341 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:40,182 DEBUG Processing 48/514 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:40,198 DEBUG Processing 40/341 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:40,450 DEBUG Processing 49/514 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:40,468 DEBUG Processing 41/341 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:40,718 DEBUG Processing 50/514 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:40,728 DEBUG Processing 42/341 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:40,988 DEBUG Processing 43/341 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:40,989 DEBUG Processing 51/514 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:41,244 DEBUG Processing 44/341 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:41,260 DEBUG Processing 52/514 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:41,506 DEBUG Processing 45/341 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:41,536 DEBUG Processing 53/514 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:41,746 DEBUG Processing 46/341 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:41,808 DEBUG Processing 54/514 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:41,986 DEBUG Processing 47/341 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:42,071 DEBUG Processing 55/514 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,224 DEBUG Processing 48/341 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:42,333 DEBUG Processing 56/514 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,462 DEBUG Processing 49/341 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:42,595 DEBUG Processing 57/514 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,697 DEBUG Processing 50/341 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:42,856 DEBUG Processing 58/514 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,961 DEBUG Processing 51/341 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:43,117 DEBUG Processing 59/514 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,203 DEBUG Processing 52/341 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:43,382 DEBUG Processing 60/514 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,439 DEBUG Processing 53/341 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:43,646 DEBUG Processing 61/514 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,675 DEBUG Processing 54/341 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:43,913 DEBUG Processing 62/514 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,915 DEBUG Processing 55/341 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:44,158 DEBUG Processing 56/341 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:44,183 DEBUG Processing 63/514 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,399 DEBUG Processing 57/341 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:44,450 DEBUG Processing 64/514 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,635 DEBUG Processing 58/341 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:44,714 DEBUG Processing 65/514 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,872 DEBUG Processing 59/341 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:44,979 DEBUG Processing 66/514 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,110 DEBUG Processing 60/341 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:45,242 DEBUG Processing 67/514 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,346 DEBUG Processing 61/341 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:45,506 DEBUG Processing 68/514 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,582 DEBUG Processing 62/341 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:45,772 DEBUG Processing 69/514 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,818 DEBUG Processing 63/341 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:46,039 DEBUG Processing 70/514 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,055 DEBUG Processing 64/341 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:46,295 DEBUG Processing 65/341 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:46,308 DEBUG Processing 71/514 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,537 DEBUG Processing 66/341 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:46,578 DEBUG Processing 72/514 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,774 DEBUG Processing 67/341 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:46,844 DEBUG Processing 73/514 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,010 DEBUG Processing 68/341 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:47,109 DEBUG Processing 74/514 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,248 DEBUG Processing 69/341 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:47,371 DEBUG Processing 75/514 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,484 DEBUG Processing 70/341 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:47,635 DEBUG Processing 76/514 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,719 DEBUG Processing 71/341 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:47,901 DEBUG Processing 77/514 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,956 DEBUG Processing 72/341 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:48,168 DEBUG Processing 78/514 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,192 DEBUG Processing 73/341 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:48,436 DEBUG Processing 74/341 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:48,436 DEBUG Processing 79/514 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,684 DEBUG Processing 75/341 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:48,709 DEBUG Processing 80/514 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,924 DEBUG Processing 76/341 atomic regions from SNP 22575 to 23176 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:48,978 DEBUG Processing 81/514 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,161 DEBUG Processing 77/341 atomic regions from SNP 22876 to 23477 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:49,243 DEBUG Processing 82/514 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,399 DEBUG Processing 78/341 atomic regions from SNP 23177 to 23778 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:49,508 DEBUG Processing 83/514 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,637 DEBUG Processing 79/341 atomic regions from SNP 23478 to 24079 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:49,772 DEBUG Processing 84/514 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,874 DEBUG Processing 80/341 atomic regions from SNP 23779 to 24380 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:50,035 DEBUG Processing 85/514 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:50,114 DEBUG Processing 81/341 atomic regions from SNP 24080 to 24681 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:50,301 DEBUG Processing 86/514 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:50,351 DEBUG Processing 82/341 atomic regions from SNP 24381 to 24982 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:50,568 DEBUG Processing 87/514 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:50,588 DEBUG Processing 83/341 atomic regions from SNP 24682 to 25283 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:50,829 DEBUG Processing 84/341 atomic regions from SNP 24983 to 25584 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:50,837 DEBUG Processing 88/514 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,073 DEBUG Processing 85/341 atomic regions from SNP 25284 to 25885 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:51,107 DEBUG Processing 89/514 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,311 DEBUG Processing 86/341 atomic regions from SNP 25585 to 26186 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:51,372 DEBUG Processing 90/514 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,550 DEBUG Processing 87/341 atomic regions from SNP 25886 to 26487 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:51,634 DEBUG Processing 91/514 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,788 DEBUG Processing 88/341 atomic regions from SNP 26187 to 26788 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:51,896 DEBUG Processing 92/514 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,037 DEBUG Processing 89/341 atomic regions from SNP 26488 to 27089 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:52,157 DEBUG Processing 93/514 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,283 DEBUG Processing 90/341 atomic regions from SNP 26789 to 27390 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:52,420 DEBUG Processing 94/514 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,521 DEBUG Processing 91/341 atomic regions from SNP 27090 to 27691 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:52,681 DEBUG Processing 95/514 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,757 DEBUG Processing 92/341 atomic regions from SNP 27391 to 27992 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:52,945 DEBUG Processing 96/514 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,994 DEBUG Processing 93/341 atomic regions from SNP 27692 to 28293 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:53,211 DEBUG Processing 97/514 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:53,232 DEBUG Processing 94/341 atomic regions from SNP 27993 to 28594 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:53,474 DEBUG Processing 95/341 atomic regions from SNP 28294 to 28895 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:53,480 DEBUG Processing 98/514 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:53,717 DEBUG Processing 96/341 atomic regions from SNP 28595 to 29196 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:53,750 DEBUG Processing 99/514 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:53,958 DEBUG Processing 97/341 atomic regions from SNP 28896 to 29497 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:54,016 DEBUG Processing 100/514 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,197 DEBUG Processing 98/341 atomic regions from SNP 29197 to 29798 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:54,278 DEBUG Processing 101/514 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,435 DEBUG Processing 99/341 atomic regions from SNP 29498 to 30099 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:54,549 DEBUG Processing 102/514 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,673 DEBUG Processing 100/341 atomic regions from SNP 29799 to 30400 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:54,823 DEBUG Processing 103/514 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,909 DEBUG Processing 101/341 atomic regions from SNP 30100 to 30701 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:55,105 DEBUG Processing 104/514 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,146 DEBUG Processing 102/341 atomic regions from SNP 30401 to 31002 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:55,380 DEBUG Processing 105/514 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,385 DEBUG Processing 103/341 atomic regions from SNP 30702 to 31303 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:55,628 DEBUG Processing 104/341 atomic regions from SNP 31003 to 31604 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:55,652 DEBUG Processing 106/514 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,869 DEBUG Processing 105/341 atomic regions from SNP 31304 to 31905 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:55,918 DEBUG Processing 107/514 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,107 DEBUG Processing 106/341 atomic regions from SNP 31605 to 32206 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:56,181 DEBUG Processing 108/514 atomic regions from SNP 32207 to 32808 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,342 DEBUG Processing 107/341 atomic regions from SNP 31906 to 32507 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:56,447 DEBUG Processing 109/514 atomic regions from SNP 32508 to 33109 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,581 DEBUG Processing 108/341 atomic regions from SNP 32207 to 32808 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:56,709 DEBUG Processing 110/514 atomic regions from SNP 32809 to 33410 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,821 DEBUG Processing 109/341 atomic regions from SNP 32508 to 33109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:56,975 DEBUG Processing 111/514 atomic regions from SNP 33110 to 33711 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:57,056 DEBUG Processing 110/341 atomic regions from SNP 32809 to 33409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:57,239 DEBUG Processing 112/514 atomic regions from SNP 33411 to 34012 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:57,290 DEBUG Processing 111/341 atomic regions from SNP 33109 to 33709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:57,502 DEBUG Processing 113/514 atomic regions from SNP 33712 to 34313 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:57,525 DEBUG Processing 112/341 atomic regions from SNP 33409 to 34009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:57,763 DEBUG Processing 113/341 atomic regions from SNP 33709 to 34309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:57,769 DEBUG Processing 114/514 atomic regions from SNP 34013 to 34614 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:58,003 DEBUG Processing 114/341 atomic regions from SNP 34009 to 34609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:58,036 DEBUG Processing 115/514 atomic regions from SNP 34314 to 34915 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:58,264 DEBUG Processing 115/341 atomic regions from SNP 34309 to 34909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:58,301 DEBUG Processing 116/514 atomic regions from SNP 34615 to 35216 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:58,520 DEBUG Processing 116/341 atomic regions from SNP 34609 to 35209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:58,565 DEBUG Processing 117/514 atomic regions from SNP 34916 to 35517 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:58,755 DEBUG Processing 117/341 atomic regions from SNP 34909 to 35509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:58,827 DEBUG Processing 118/514 atomic regions from SNP 35217 to 35818 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:58,988 DEBUG Processing 118/341 atomic regions from SNP 35209 to 35809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:59,107 DEBUG Processing 119/514 atomic regions from SNP 35518 to 36119 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:59,222 DEBUG Processing 119/341 atomic regions from SNP 35509 to 36109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:59,391 DEBUG Processing 120/514 atomic regions from SNP 35819 to 36420 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:59,455 DEBUG Processing 120/341 atomic regions from SNP 35809 to 36409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:59,672 DEBUG Processing 121/514 atomic regions from SNP 36120 to 36721 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:59,691 DEBUG Processing 121/341 atomic regions from SNP 36109 to 36709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:59,930 DEBUG Processing 122/341 atomic regions from SNP 36409 to 37009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:59,961 DEBUG Processing 122/514 atomic regions from SNP 36421 to 37022 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:00,168 DEBUG Processing 123/341 atomic regions from SNP 36709 to 37309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:00,229 DEBUG Processing 123/514 atomic regions from SNP 36722 to 37323 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:00,425 DEBUG Processing 124/341 atomic regions from SNP 37009 to 37609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:00,507 DEBUG Processing 124/514 atomic regions from SNP 37023 to 37624 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:00,663 DEBUG Processing 125/341 atomic regions from SNP 37309 to 37909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:00,782 DEBUG Processing 125/514 atomic regions from SNP 37324 to 37925 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:00,896 DEBUG Processing 126/341 atomic regions from SNP 37609 to 38209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:01,044 DEBUG Processing 126/514 atomic regions from SNP 37625 to 38226 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:01,130 DEBUG Processing 127/341 atomic regions from SNP 37909 to 38509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:01,308 DEBUG Processing 127/514 atomic regions from SNP 37926 to 38527 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:01,365 DEBUG Processing 128/341 atomic regions from SNP 38209 to 38809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:01,573 DEBUG Processing 128/514 atomic regions from SNP 38227 to 38828 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:01,600 DEBUG Processing 129/341 atomic regions from SNP 38509 to 39109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:01,837 DEBUG Processing 130/341 atomic regions from SNP 38809 to 39409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:01,839 DEBUG Processing 129/514 atomic regions from SNP 38528 to 39129 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:02,081 DEBUG Processing 131/341 atomic regions from SNP 39109 to 39709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:02,109 DEBUG Processing 130/514 atomic regions from SNP 38829 to 39430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:02,323 DEBUG Processing 132/341 atomic regions from SNP 39409 to 40009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:02,379 DEBUG Processing 131/514 atomic regions from SNP 39130 to 39731 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:02,561 DEBUG Processing 133/341 atomic regions from SNP 39709 to 40309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:02,642 DEBUG Processing 132/514 atomic regions from SNP 39431 to 40032 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:02,800 DEBUG Processing 134/341 atomic regions from SNP 40009 to 40609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:02,904 DEBUG Processing 133/514 atomic regions from SNP 39732 to 40333 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:03,040 DEBUG Processing 135/341 atomic regions from SNP 40309 to 40909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:03,166 DEBUG Processing 134/514 atomic regions from SNP 40033 to 40634 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:03,278 DEBUG Processing 136/341 atomic regions from SNP 40609 to 41209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:03,430 DEBUG Processing 135/514 atomic regions from SNP 40334 to 40935 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:03,518 DEBUG Processing 137/341 atomic regions from SNP 40909 to 41509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:03,696 DEBUG Processing 136/514 atomic regions from SNP 40635 to 41236 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:03,753 DEBUG Processing 138/341 atomic regions from SNP 41209 to 41809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:03,959 DEBUG Processing 137/514 atomic regions from SNP 40936 to 41537 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:03,988 DEBUG Processing 139/341 atomic regions from SNP 41509 to 42109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:04,225 DEBUG Processing 138/514 atomic regions from SNP 41237 to 41838 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:04,226 DEBUG Processing 140/341 atomic regions from SNP 41809 to 42409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:04,470 DEBUG Processing 141/341 atomic regions from SNP 42109 to 42709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:04,495 DEBUG Processing 139/514 atomic regions from SNP 41538 to 42139 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:04,708 DEBUG Processing 142/341 atomic regions from SNP 42409 to 43009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:04,759 DEBUG Processing 140/514 atomic regions from SNP 41839 to 42440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:04,944 DEBUG Processing 143/341 atomic regions from SNP 42709 to 43309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:05,021 DEBUG Processing 141/514 atomic regions from SNP 42140 to 42741 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:05,179 DEBUG Processing 144/341 atomic regions from SNP 43009 to 43609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:05,287 DEBUG Processing 142/514 atomic regions from SNP 42441 to 43042 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:05,418 DEBUG Processing 145/341 atomic regions from SNP 43309 to 43909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:05,550 DEBUG Processing 143/514 atomic regions from SNP 42742 to 43343 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:05,655 DEBUG Processing 146/341 atomic regions from SNP 43609 to 44209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:05,812 DEBUG Processing 144/514 atomic regions from SNP 43043 to 43644 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:05,892 DEBUG Processing 147/341 atomic regions from SNP 43909 to 44509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:06,080 DEBUG Processing 145/514 atomic regions from SNP 43344 to 43945 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:06,131 DEBUG Processing 148/341 atomic regions from SNP 44209 to 44809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:06,344 DEBUG Processing 146/514 atomic regions from SNP 43645 to 44246 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:06,369 DEBUG Processing 149/341 atomic regions from SNP 44509 to 45109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:06,609 DEBUG Processing 150/341 atomic regions from SNP 44809 to 45409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:06,609 DEBUG Processing 147/514 atomic regions from SNP 43946 to 44547 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:06,876 DEBUG Processing 151/341 atomic regions from SNP 45109 to 45709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:06,879 DEBUG Processing 148/514 atomic regions from SNP 44247 to 44848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:07,133 DEBUG Processing 152/341 atomic regions from SNP 45409 to 46009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:07,147 DEBUG Processing 149/514 atomic regions from SNP 44548 to 45148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:07,383 DEBUG Processing 153/341 atomic regions from SNP 45709 to 46309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:07,413 DEBUG Processing 150/514 atomic regions from SNP 44848 to 45448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:07,626 DEBUG Processing 154/341 atomic regions from SNP 46009 to 46609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:07,675 DEBUG Processing 151/514 atomic regions from SNP 45148 to 45748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:07,862 DEBUG Processing 155/341 atomic regions from SNP 46309 to 46909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:07,937 DEBUG Processing 152/514 atomic regions from SNP 45448 to 46048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:08,100 DEBUG Processing 156/341 atomic regions from SNP 46609 to 47209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:08,199 DEBUG Processing 153/514 atomic regions from SNP 45748 to 46348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:08,340 DEBUG Processing 157/341 atomic regions from SNP 46909 to 47509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:08,459 DEBUG Processing 154/514 atomic regions from SNP 46048 to 46648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:08,577 DEBUG Processing 158/341 atomic regions from SNP 47209 to 47809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:08,720 DEBUG Processing 155/514 atomic regions from SNP 46348 to 46948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:08,815 DEBUG Processing 159/341 atomic regions from SNP 47509 to 48109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:08,982 DEBUG Processing 156/514 atomic regions from SNP 46648 to 47248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:09,052 DEBUG Processing 160/341 atomic regions from SNP 47809 to 48409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:09,246 DEBUG Processing 157/514 atomic regions from SNP 46948 to 47548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:09,289 DEBUG Processing 161/341 atomic regions from SNP 48109 to 48709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:09,509 DEBUG Processing 158/514 atomic regions from SNP 47248 to 47848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:09,527 DEBUG Processing 162/341 atomic regions from SNP 48409 to 49009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:09,768 DEBUG Processing 163/341 atomic regions from SNP 48709 to 49309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:09,775 DEBUG Processing 159/514 atomic regions from SNP 47548 to 48148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:10,008 DEBUG Processing 164/341 atomic regions from SNP 49009 to 49609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:10,043 DEBUG Processing 160/514 atomic regions from SNP 47848 to 48448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:10,247 DEBUG Processing 165/341 atomic regions from SNP 49309 to 49909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:10,305 DEBUG Processing 161/514 atomic regions from SNP 48148 to 48748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:10,482 DEBUG Processing 166/341 atomic regions from SNP 49609 to 50209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:10,572 DEBUG Processing 162/514 atomic regions from SNP 48448 to 49048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:10,715 DEBUG Processing 167/341 atomic regions from SNP 49909 to 50509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:10,832 DEBUG Processing 163/514 atomic regions from SNP 48748 to 49348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:10,944 DEBUG Processing 168/341 atomic regions from SNP 50209 to 50809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:11,091 DEBUG Processing 164/514 atomic regions from SNP 49048 to 49648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:11,174 DEBUG Processing 169/341 atomic regions from SNP 50509 to 51109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:11,352 DEBUG Processing 165/514 atomic regions from SNP 49348 to 49948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:11,413 DEBUG Processing 170/341 atomic regions from SNP 50809 to 51409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:11,627 DEBUG Processing 166/514 atomic regions from SNP 49648 to 50248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:11,663 DEBUG Processing 171/341 atomic regions from SNP 51109 to 51709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:11,902 DEBUG Processing 167/514 atomic regions from SNP 49948 to 50548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:11,906 DEBUG Processing 172/341 atomic regions from SNP 51409 to 52009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:12,142 DEBUG Processing 173/341 atomic regions from SNP 51709 to 52309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:12,178 DEBUG Processing 168/514 atomic regions from SNP 50248 to 50848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:12,375 DEBUG Processing 174/341 atomic regions from SNP 52009 to 52609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:12,442 DEBUG Processing 169/514 atomic regions from SNP 50548 to 51148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:12,605 DEBUG Processing 175/341 atomic regions from SNP 52309 to 52909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:12,701 DEBUG Processing 170/514 atomic regions from SNP 50848 to 51448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:12,835 DEBUG Processing 176/341 atomic regions from SNP 52609 to 53209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:12,986 DEBUG Processing 171/514 atomic regions from SNP 51148 to 51748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:13,062 DEBUG Processing 177/341 atomic regions from SNP 52909 to 53509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:13,256 DEBUG Processing 172/514 atomic regions from SNP 51448 to 52048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:13,293 DEBUG Processing 178/341 atomic regions from SNP 53209 to 53809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:13,520 DEBUG Processing 173/514 atomic regions from SNP 51748 to 52348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:13,538 DEBUG Processing 179/341 atomic regions from SNP 53509 to 54109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:13,779 DEBUG Processing 180/341 atomic regions from SNP 53809 to 54409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:13,785 DEBUG Processing 174/514 atomic regions from SNP 52048 to 52648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:14,016 DEBUG Processing 181/341 atomic regions from SNP 54109 to 54709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:14,050 DEBUG Processing 175/514 atomic regions from SNP 52348 to 52948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:14,250 DEBUG Processing 182/341 atomic regions from SNP 54409 to 55009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:14,310 DEBUG Processing 176/514 atomic regions from SNP 52648 to 53248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:14,480 DEBUG Processing 183/341 atomic regions from SNP 54709 to 55309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:14,567 DEBUG Processing 177/514 atomic regions from SNP 52948 to 53548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:14,709 DEBUG Processing 184/341 atomic regions from SNP 55009 to 55609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:14,823 DEBUG Processing 178/514 atomic regions from SNP 53248 to 53848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:14,939 DEBUG Processing 185/341 atomic regions from SNP 55309 to 55909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:15,081 DEBUG Processing 179/514 atomic regions from SNP 53548 to 54148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:15,168 DEBUG Processing 186/341 atomic regions from SNP 55609 to 56209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:15,339 DEBUG Processing 180/514 atomic regions from SNP 53848 to 54448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:15,398 DEBUG Processing 187/341 atomic regions from SNP 55909 to 56509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:15,614 DEBUG Processing 181/514 atomic regions from SNP 54148 to 54748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:15,630 DEBUG Processing 188/341 atomic regions from SNP 56209 to 56809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:15,865 DEBUG Processing 189/341 atomic regions from SNP 56509 to 57109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:15,904 DEBUG Processing 182/514 atomic regions from SNP 54448 to 55048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:16,096 DEBUG Processing 190/341 atomic regions from SNP 56809 to 57409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:16,194 DEBUG Processing 183/514 atomic regions from SNP 54748 to 55348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:16,327 DEBUG Processing 191/341 atomic regions from SNP 57109 to 57709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:16,487 DEBUG Processing 184/514 atomic regions from SNP 55048 to 55648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:16,554 DEBUG Processing 192/341 atomic regions from SNP 57409 to 58009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:16,786 DEBUG Processing 185/514 atomic regions from SNP 55348 to 55948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:16,786 DEBUG Processing 193/341 atomic regions from SNP 57709 to 58309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:17,022 DEBUG Processing 194/341 atomic regions from SNP 58009 to 58609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:17,078 DEBUG Processing 186/514 atomic regions from SNP 55648 to 56248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:17,252 DEBUG Processing 195/341 atomic regions from SNP 58309 to 58909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:17,351 DEBUG Processing 187/514 atomic regions from SNP 55948 to 56548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:17,483 DEBUG Processing 196/341 atomic regions from SNP 58609 to 59209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:17,607 DEBUG Processing 188/514 atomic regions from SNP 56248 to 56848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:17,730 DEBUG Processing 197/341 atomic regions from SNP 58909 to 59509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:17,889 DEBUG Processing 189/514 atomic regions from SNP 56548 to 57148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:17,959 DEBUG Processing 198/341 atomic regions from SNP 59209 to 59809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:18,177 DEBUG Processing 190/514 atomic regions from SNP 56848 to 57448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:18,210 DEBUG Processing 199/341 atomic regions from SNP 59509 to 60109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:18,446 DEBUG Processing 200/341 atomic regions from SNP 59809 to 60409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:18,468 DEBUG Processing 191/514 atomic regions from SNP 57148 to 57748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:18,679 DEBUG Processing 201/341 atomic regions from SNP 60109 to 60709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:18,754 DEBUG Processing 192/514 atomic regions from SNP 57448 to 58048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:18,909 DEBUG Processing 202/341 atomic regions from SNP 60409 to 61009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:19,029 DEBUG Processing 193/514 atomic regions from SNP 57748 to 58348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:19,137 DEBUG Processing 203/341 atomic regions from SNP 60709 to 61309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:19,317 DEBUG Processing 194/514 atomic regions from SNP 58048 to 58648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:19,365 DEBUG Processing 204/341 atomic regions from SNP 61009 to 61609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:19,597 DEBUG Processing 205/341 atomic regions from SNP 61309 to 61909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:19,604 DEBUG Processing 195/514 atomic regions from SNP 58348 to 58948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:19,831 DEBUG Processing 206/341 atomic regions from SNP 61609 to 62209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:19,895 DEBUG Processing 196/514 atomic regions from SNP 58648 to 59248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:20,061 DEBUG Processing 207/341 atomic regions from SNP 61909 to 62509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:20,182 DEBUG Processing 197/514 atomic regions from SNP 58948 to 59548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:20,290 DEBUG Processing 208/341 atomic regions from SNP 62209 to 62809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:20,459 DEBUG Processing 198/514 atomic regions from SNP 59248 to 59848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:20,519 DEBUG Processing 209/341 atomic regions from SNP 62509 to 63109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:20,717 DEBUG Processing 199/514 atomic regions from SNP 59548 to 60148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:20,750 DEBUG Processing 210/341 atomic regions from SNP 62809 to 63409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:20,977 DEBUG Processing 200/514 atomic regions from SNP 59848 to 60448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:20,981 DEBUG Processing 211/341 atomic regions from SNP 63109 to 63709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:21,219 DEBUG Processing 212/341 atomic regions from SNP 63409 to 64009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:21,243 DEBUG Processing 201/514 atomic regions from SNP 60148 to 60748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:21,454 DEBUG Processing 213/341 atomic regions from SNP 63709 to 64309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:21,504 DEBUG Processing 202/514 atomic regions from SNP 60448 to 61048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:21,685 DEBUG Processing 214/341 atomic regions from SNP 64009 to 64609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:21,782 DEBUG Processing 203/514 atomic regions from SNP 60748 to 61348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:21,915 DEBUG Processing 215/341 atomic regions from SNP 64309 to 64909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:22,064 DEBUG Processing 204/514 atomic regions from SNP 61048 to 61648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:22,143 DEBUG Processing 216/341 atomic regions from SNP 64609 to 65209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:22,342 DEBUG Processing 205/514 atomic regions from SNP 61348 to 61948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:22,373 DEBUG Processing 217/341 atomic regions from SNP 64909 to 65509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:22,607 DEBUG Processing 218/341 atomic regions from SNP 65209 to 65809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:22,634 DEBUG Processing 206/514 atomic regions from SNP 61648 to 62248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:22,842 DEBUG Processing 219/341 atomic regions from SNP 65509 to 66109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:22,920 DEBUG Processing 207/514 atomic regions from SNP 61948 to 62548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:23,072 DEBUG Processing 220/341 atomic regions from SNP 65809 to 66409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:23,178 DEBUG Processing 208/514 atomic regions from SNP 62248 to 62848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:23,303 DEBUG Processing 221/341 atomic regions from SNP 66109 to 66709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:23,435 DEBUG Processing 209/514 atomic regions from SNP 62548 to 63148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:23,532 DEBUG Processing 222/341 atomic regions from SNP 66409 to 67009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:23,691 DEBUG Processing 210/514 atomic regions from SNP 62848 to 63448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:23,761 DEBUG Processing 223/341 atomic regions from SNP 66709 to 67309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:23,950 DEBUG Processing 211/514 atomic regions from SNP 63148 to 63748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:23,993 DEBUG Processing 224/341 atomic regions from SNP 67009 to 67609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:24,208 DEBUG Processing 212/514 atomic regions from SNP 63448 to 64048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:24,247 DEBUG Processing 225/341 atomic regions from SNP 67309 to 67909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:24,475 DEBUG Processing 213/514 atomic regions from SNP 63748 to 64348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:24,507 DEBUG Processing 226/341 atomic regions from SNP 67609 to 68209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:24,735 DEBUG Processing 214/514 atomic regions from SNP 64048 to 64648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:24,767 DEBUG Processing 227/341 atomic regions from SNP 67909 to 68509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:24,995 DEBUG Processing 215/514 atomic regions from SNP 64348 to 64948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:25,014 DEBUG Processing 228/341 atomic regions from SNP 68209 to 68809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:25,250 DEBUG Processing 229/341 atomic regions from SNP 68509 to 69109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:25,257 DEBUG Processing 216/514 atomic regions from SNP 64648 to 65248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:25,486 DEBUG Processing 230/341 atomic regions from SNP 68809 to 69409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:25,521 DEBUG Processing 217/514 atomic regions from SNP 64948 to 65548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:25,723 DEBUG Processing 231/341 atomic regions from SNP 69109 to 69709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:25,780 DEBUG Processing 218/514 atomic regions from SNP 65248 to 65848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:25,954 DEBUG Processing 232/341 atomic regions from SNP 69409 to 70009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:26,037 DEBUG Processing 219/514 atomic regions from SNP 65548 to 66148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:26,184 DEBUG Processing 233/341 atomic regions from SNP 69709 to 70309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:26,295 DEBUG Processing 220/514 atomic regions from SNP 65848 to 66448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:26,415 DEBUG Processing 234/341 atomic regions from SNP 70009 to 70609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:26,552 DEBUG Processing 221/514 atomic regions from SNP 66148 to 66748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:26,644 DEBUG Processing 235/341 atomic regions from SNP 70309 to 70909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:26,809 DEBUG Processing 222/514 atomic regions from SNP 66448 to 67048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:26,889 DEBUG Processing 236/341 atomic regions from SNP 70609 to 71209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:27,069 DEBUG Processing 223/514 atomic regions from SNP 66748 to 67348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:27,141 DEBUG Processing 237/341 atomic regions from SNP 70909 to 71509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:27,330 DEBUG Processing 224/514 atomic regions from SNP 67048 to 67648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:27,371 DEBUG Processing 238/341 atomic regions from SNP 71209 to 71809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:27,590 DEBUG Processing 225/514 atomic regions from SNP 67348 to 67948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:27,602 DEBUG Processing 239/341 atomic regions from SNP 71509 to 72109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:27,852 DEBUG Processing 226/514 atomic regions from SNP 67648 to 68248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:27,871 DEBUG Processing 240/341 atomic regions from SNP 71809 to 72409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:28,115 DEBUG Processing 227/514 atomic regions from SNP 67948 to 68548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:28,139 DEBUG Processing 241/341 atomic regions from SNP 72109 to 72709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:28,375 DEBUG Processing 228/514 atomic regions from SNP 68248 to 68848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:28,399 DEBUG Processing 242/341 atomic regions from SNP 72409 to 73009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:28,635 DEBUG Processing 243/341 atomic regions from SNP 72709 to 73309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:28,638 DEBUG Processing 229/514 atomic regions from SNP 68548 to 69148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:28,876 DEBUG Processing 244/341 atomic regions from SNP 73009 to 73609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:28,916 DEBUG Processing 230/514 atomic regions from SNP 68848 to 69448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:29,140 DEBUG Processing 245/341 atomic regions from SNP 73309 to 73909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:29,176 DEBUG Processing 231/514 atomic regions from SNP 69148 to 69748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:29,385 DEBUG Processing 246/341 atomic regions from SNP 73609 to 74209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:29,436 DEBUG Processing 232/514 atomic regions from SNP 69448 to 70048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:29,617 DEBUG Processing 247/341 atomic regions from SNP 73909 to 74509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:29,694 DEBUG Processing 233/514 atomic regions from SNP 69748 to 70348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:29,875 DEBUG Processing 248/341 atomic regions from SNP 74209 to 74809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:29,952 DEBUG Processing 234/514 atomic regions from SNP 70048 to 70648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:30,136 DEBUG Processing 249/341 atomic regions from SNP 74509 to 75109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:30,211 DEBUG Processing 235/514 atomic regions from SNP 70348 to 70948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:30,393 DEBUG Processing 250/341 atomic regions from SNP 74809 to 75409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:30,470 DEBUG Processing 236/514 atomic regions from SNP 70648 to 71248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:30,654 DEBUG Processing 251/341 atomic regions from SNP 75109 to 75709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:30,728 DEBUG Processing 237/514 atomic regions from SNP 70948 to 71548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:30,904 DEBUG Processing 252/341 atomic regions from SNP 75409 to 76009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:30,986 DEBUG Processing 238/514 atomic regions from SNP 71248 to 71848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:31,163 DEBUG Processing 253/341 atomic regions from SNP 75709 to 76309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:31,243 DEBUG Processing 239/514 atomic regions from SNP 71548 to 72148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:31,426 DEBUG Processing 254/341 atomic regions from SNP 76009 to 76609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:31,503 DEBUG Processing 240/514 atomic regions from SNP 71848 to 72448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:31,679 DEBUG Processing 255/341 atomic regions from SNP 76309 to 76909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:31,760 DEBUG Processing 241/514 atomic regions from SNP 72148 to 72748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:31,927 DEBUG Processing 256/341 atomic regions from SNP 76609 to 77209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:32,017 DEBUG Processing 242/514 atomic regions from SNP 72448 to 73048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:32,179 DEBUG Processing 257/341 atomic regions from SNP 76909 to 77509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:32,274 DEBUG Processing 243/514 atomic regions from SNP 72748 to 73348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:32,426 DEBUG Processing 258/341 atomic regions from SNP 77209 to 77809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:32,531 DEBUG Processing 244/514 atomic regions from SNP 73048 to 73648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:32,662 DEBUG Processing 259/341 atomic regions from SNP 77509 to 78109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:32,787 DEBUG Processing 245/514 atomic regions from SNP 73348 to 73948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:32,904 DEBUG Processing 260/341 atomic regions from SNP 77809 to 78409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:33,044 DEBUG Processing 246/514 atomic regions from SNP 73648 to 74248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:33,148 DEBUG Processing 261/341 atomic regions from SNP 78109 to 78709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:33,299 DEBUG Processing 247/514 atomic regions from SNP 73948 to 74548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:33,377 DEBUG Processing 262/341 atomic regions from SNP 78409 to 79009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:33,559 DEBUG Processing 248/514 atomic regions from SNP 74248 to 74848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:33,607 DEBUG Processing 263/341 atomic regions from SNP 78709 to 79309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:33,817 DEBUG Processing 249/514 atomic regions from SNP 74548 to 75148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:33,838 DEBUG Processing 264/341 atomic regions from SNP 79009 to 79609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:34,074 DEBUG Processing 265/341 atomic regions from SNP 79309 to 79909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:34,080 DEBUG Processing 250/514 atomic regions from SNP 74848 to 75448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:34,313 DEBUG Processing 266/341 atomic regions from SNP 79609 to 80209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:34,344 DEBUG Processing 251/514 atomic regions from SNP 75148 to 75748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:34,547 DEBUG Processing 267/341 atomic regions from SNP 79909 to 80509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:34,604 DEBUG Processing 252/514 atomic regions from SNP 75448 to 76048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:34,778 DEBUG Processing 268/341 atomic regions from SNP 80209 to 80809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:34,861 DEBUG Processing 253/514 atomic regions from SNP 75748 to 76348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:35,008 DEBUG Processing 269/341 atomic regions from SNP 80509 to 81109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:35,126 DEBUG Processing 254/514 atomic regions from SNP 76048 to 76648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:35,238 DEBUG Processing 270/341 atomic regions from SNP 80809 to 81409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:35,414 DEBUG Processing 255/514 atomic regions from SNP 76348 to 76948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:35,468 DEBUG Processing 271/341 atomic regions from SNP 81109 to 81709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:35,673 DEBUG Processing 256/514 atomic regions from SNP 76648 to 77248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:35,698 DEBUG Processing 272/341 atomic regions from SNP 81409 to 82009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:35,933 DEBUG Processing 273/341 atomic regions from SNP 81709 to 82309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:35,935 DEBUG Processing 257/514 atomic regions from SNP 76948 to 77548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:36,171 DEBUG Processing 274/341 atomic regions from SNP 82009 to 82609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:36,201 DEBUG Processing 258/514 atomic regions from SNP 77248 to 77848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:36,404 DEBUG Processing 275/341 atomic regions from SNP 82309 to 82909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:36,465 DEBUG Processing 259/514 atomic regions from SNP 77548 to 78148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:36,635 DEBUG Processing 276/341 atomic regions from SNP 82609 to 83209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:36,755 DEBUG Processing 260/514 atomic regions from SNP 77848 to 78448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:36,864 DEBUG Processing 277/341 atomic regions from SNP 82909 to 83509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:37,013 DEBUG Processing 261/514 atomic regions from SNP 78148 to 78748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:37,094 DEBUG Processing 278/341 atomic regions from SNP 83209 to 83809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:37,275 DEBUG Processing 262/514 atomic regions from SNP 78448 to 79048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:37,324 DEBUG Processing 279/341 atomic regions from SNP 83509 to 84109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:37,534 DEBUG Processing 263/514 atomic regions from SNP 78748 to 79348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:37,556 DEBUG Processing 280/341 atomic regions from SNP 83809 to 84409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:37,792 DEBUG Processing 281/341 atomic regions from SNP 84109 to 84709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:37,797 DEBUG Processing 264/514 atomic regions from SNP 79048 to 79648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:38,029 DEBUG Processing 282/341 atomic regions from SNP 84409 to 85009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:38,061 DEBUG Processing 265/514 atomic regions from SNP 79348 to 79948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:38,262 DEBUG Processing 283/341 atomic regions from SNP 84709 to 85309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:38,321 DEBUG Processing 266/514 atomic regions from SNP 79648 to 80248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:38,492 DEBUG Processing 284/341 atomic regions from SNP 85009 to 85609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:38,578 DEBUG Processing 267/514 atomic regions from SNP 79948 to 80548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:38,722 DEBUG Processing 285/341 atomic regions from SNP 85309 to 85909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:38,835 DEBUG Processing 268/514 atomic regions from SNP 80248 to 80848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:38,952 DEBUG Processing 286/341 atomic regions from SNP 85609 to 86209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:39,093 DEBUG Processing 269/514 atomic regions from SNP 80548 to 81148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:39,182 DEBUG Processing 287/341 atomic regions from SNP 85909 to 86509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:39,351 DEBUG Processing 270/514 atomic regions from SNP 80848 to 81448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:39,412 DEBUG Processing 288/341 atomic regions from SNP 86209 to 86809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:39,611 DEBUG Processing 271/514 atomic regions from SNP 81148 to 81748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:39,643 DEBUG Processing 289/341 atomic regions from SNP 86509 to 87109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:39,872 DEBUG Processing 272/514 atomic regions from SNP 81448 to 82048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:39,876 DEBUG Processing 290/341 atomic regions from SNP 86809 to 87409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:40,115 DEBUG Processing 291/341 atomic regions from SNP 87109 to 87709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:40,138 DEBUG Processing 273/514 atomic regions from SNP 81748 to 82348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:40,350 DEBUG Processing 292/341 atomic regions from SNP 87409 to 88009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:40,400 DEBUG Processing 274/514 atomic regions from SNP 82048 to 82648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:40,592 DEBUG Processing 293/341 atomic regions from SNP 87709 to 88309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:40,659 DEBUG Processing 275/514 atomic regions from SNP 82348 to 82948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:40,851 DEBUG Processing 294/341 atomic regions from SNP 88009 to 88609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:40,921 DEBUG Processing 276/514 atomic regions from SNP 82648 to 83248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:41,089 DEBUG Processing 295/341 atomic regions from SNP 88309 to 88909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:41,178 DEBUG Processing 277/514 atomic regions from SNP 82948 to 83548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:41,319 DEBUG Processing 296/341 atomic regions from SNP 88609 to 89209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:41,435 DEBUG Processing 278/514 atomic regions from SNP 83248 to 83848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:41,579 DEBUG Processing 297/341 atomic regions from SNP 88909 to 89509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:41,690 DEBUG Processing 279/514 atomic regions from SNP 83548 to 84148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:41,835 DEBUG Processing 298/341 atomic regions from SNP 89209 to 89809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:41,946 DEBUG Processing 280/514 atomic regions from SNP 83848 to 84448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:42,065 DEBUG Processing 299/341 atomic regions from SNP 89509 to 90109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:42,204 DEBUG Processing 281/514 atomic regions from SNP 84148 to 84748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:42,296 DEBUG Processing 300/341 atomic regions from SNP 89809 to 90409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:42,463 DEBUG Processing 282/514 atomic regions from SNP 84448 to 85048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:42,526 DEBUG Processing 301/341 atomic regions from SNP 90109 to 90709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:42,723 DEBUG Processing 283/514 atomic regions from SNP 84748 to 85348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:42,757 DEBUG Processing 302/341 atomic regions from SNP 90409 to 91009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:42,984 DEBUG Processing 284/514 atomic regions from SNP 85048 to 85648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:42,991 DEBUG Processing 303/341 atomic regions from SNP 90709 to 91309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:43,229 DEBUG Processing 304/341 atomic regions from SNP 91009 to 91609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:43,250 DEBUG Processing 285/514 atomic regions from SNP 85348 to 85948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:43,469 DEBUG Processing 305/341 atomic regions from SNP 91309 to 91909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:43,513 DEBUG Processing 286/514 atomic regions from SNP 85648 to 86248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:43,702 DEBUG Processing 306/341 atomic regions from SNP 91609 to 92209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:43,771 DEBUG Processing 287/514 atomic regions from SNP 85948 to 86548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:43,932 DEBUG Processing 307/341 atomic regions from SNP 91909 to 92509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:44,029 DEBUG Processing 288/514 atomic regions from SNP 86248 to 86848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:44,163 DEBUG Processing 308/341 atomic regions from SNP 92209 to 92809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:44,286 DEBUG Processing 289/514 atomic regions from SNP 86548 to 87148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:44,393 DEBUG Processing 309/341 atomic regions from SNP 92509 to 93109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:44,544 DEBUG Processing 290/514 atomic regions from SNP 86848 to 87448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:44,626 DEBUG Processing 310/341 atomic regions from SNP 92809 to 93409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:44,804 DEBUG Processing 291/514 atomic regions from SNP 87148 to 87748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:44,858 DEBUG Processing 311/341 atomic regions from SNP 93109 to 93709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:45,064 DEBUG Processing 292/514 atomic regions from SNP 87448 to 88048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:45,090 DEBUG Processing 312/341 atomic regions from SNP 93409 to 94009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:45,326 DEBUG Processing 313/341 atomic regions from SNP 93709 to 94309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:45,326 DEBUG Processing 293/514 atomic regions from SNP 87748 to 88348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:45,564 DEBUG Processing 314/341 atomic regions from SNP 94009 to 94609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:45,591 DEBUG Processing 294/514 atomic regions from SNP 88048 to 88648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:45,799 DEBUG Processing 315/341 atomic regions from SNP 94309 to 94909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:45,852 DEBUG Processing 295/514 atomic regions from SNP 88348 to 88948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:46,030 DEBUG Processing 316/341 atomic regions from SNP 94609 to 95209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:46,109 DEBUG Processing 296/514 atomic regions from SNP 88648 to 89248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:46,261 DEBUG Processing 317/341 atomic regions from SNP 94909 to 95509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:46,368 DEBUG Processing 297/514 atomic regions from SNP 88948 to 89548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:46,493 DEBUG Processing 318/341 atomic regions from SNP 95209 to 95809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:46,627 DEBUG Processing 298/514 atomic regions from SNP 89248 to 89848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:46,723 DEBUG Processing 319/341 atomic regions from SNP 95509 to 96109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:46,884 DEBUG Processing 299/514 atomic regions from SNP 89548 to 90148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:46,953 DEBUG Processing 320/341 atomic regions from SNP 95809 to 96409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:47,144 DEBUG Processing 300/514 atomic regions from SNP 89848 to 90448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:47,184 DEBUG Processing 321/341 atomic regions from SNP 96109 to 96709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:47,407 DEBUG Processing 301/514 atomic regions from SNP 90148 to 90748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:47,417 DEBUG Processing 322/341 atomic regions from SNP 96409 to 97009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:47,654 DEBUG Processing 323/341 atomic regions from SNP 96709 to 97309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:47,673 DEBUG Processing 302/514 atomic regions from SNP 90448 to 91048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:47,890 DEBUG Processing 324/341 atomic regions from SNP 97009 to 97609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:47,935 DEBUG Processing 303/514 atomic regions from SNP 90748 to 91348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:48,122 DEBUG Processing 325/341 atomic regions from SNP 97309 to 97909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:48,193 DEBUG Processing 304/514 atomic regions from SNP 91048 to 91648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:48,352 DEBUG Processing 326/341 atomic regions from SNP 97609 to 98209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:48,450 DEBUG Processing 305/514 atomic regions from SNP 91348 to 91948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:48,584 DEBUG Processing 327/341 atomic regions from SNP 97909 to 98509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:48,707 DEBUG Processing 306/514 atomic regions from SNP 91648 to 92248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:48,814 DEBUG Processing 328/341 atomic regions from SNP 98209 to 98809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:48,964 DEBUG Processing 307/514 atomic regions from SNP 91948 to 92548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:49,043 DEBUG Processing 329/341 atomic regions from SNP 98509 to 99109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:49,223 DEBUG Processing 308/514 atomic regions from SNP 92248 to 92848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:49,274 DEBUG Processing 330/341 atomic regions from SNP 98809 to 99409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:49,483 DEBUG Processing 309/514 atomic regions from SNP 92548 to 93148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:49,506 DEBUG Processing 331/341 atomic regions from SNP 99109 to 99709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:49,742 DEBUG Processing 332/341 atomic regions from SNP 99409 to 100009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:49,746 DEBUG Processing 310/514 atomic regions from SNP 92848 to 93448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:49,979 DEBUG Processing 333/341 atomic regions from SNP 99709 to 100309 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:50,011 DEBUG Processing 311/514 atomic regions from SNP 93148 to 93748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:50,213 DEBUG Processing 334/341 atomic regions from SNP 100009 to 100609 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:50,271 DEBUG Processing 312/514 atomic regions from SNP 93448 to 94048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:50,445 DEBUG Processing 335/341 atomic regions from SNP 100309 to 100909 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:50,540 DEBUG Processing 313/514 atomic regions from SNP 93748 to 94348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:50,675 DEBUG Processing 336/341 atomic regions from SNP 100609 to 101209 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:50,823 DEBUG Processing 314/514 atomic regions from SNP 94048 to 94648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:50,903 DEBUG Processing 337/341 atomic regions from SNP 100909 to 101509 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:51,104 DEBUG Processing 315/514 atomic regions from SNP 94348 to 94948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:51,135 DEBUG Processing 338/341 atomic regions from SNP 101209 to 101809 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:51,369 DEBUG Processing 339/341 atomic regions from SNP 101509 to 102109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:51,381 DEBUG Processing 316/514 atomic regions from SNP 94648 to 95248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:51,616 DEBUG Processing 340/341 atomic regions from SNP 101809 to 102409 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:51,645 DEBUG Processing 317/514 atomic regions from SNP 94948 to 95548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:51,850 DEBUG Processing 341/341 atomic regions from SNP 102109 to 102709 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:51,906 DEBUG Processing 318/514 atomic regions from SNP 95248 to 95848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:52,039 DEBUG Unique SNPs positions in subchromosome 1: 102710 2025-01-31 10:02:52,164 DEBUG Processing 319/514 atomic regions from SNP 95548 to 96148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:52,418 DEBUG Processing 320/514 atomic regions from SNP 95848 to 96448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:52,673 DEBUG Processing 321/514 atomic regions from SNP 96148 to 96748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:52,927 DEBUG Processing 322/514 atomic regions from SNP 96448 to 97048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:53,182 DEBUG Processing 323/514 atomic regions from SNP 96748 to 97348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:53,437 DEBUG Processing 324/514 atomic regions from SNP 97048 to 97648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:53,692 DEBUG Processing 325/514 atomic regions from SNP 97348 to 97948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:53,947 DEBUG Processing 326/514 atomic regions from SNP 97648 to 98248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:54,202 DEBUG Processing 327/514 atomic regions from SNP 97948 to 98548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:54,395 DEBUG Subchromosome time: 96.69916128495242, subchromosome SNPs: 102710 2025-01-31 10:02:54,396 DEBUG Estimated BADs: [12.72, 0.64, 10.17, 0.64, 7.63, 0.64, 5.09, 0.85, 2.54, 0.85, 10.17, 2.54, 1.27, 2.54, 0.85, 5.09, 0.64, 2.54, 0.25, 2.54, 7.63, 0.85, 0.32, 2.54] SNP counts: [8126, 963, 1409, 743, 2109, 1181, 575, 6058, 3327, 9909, 303, 2998, 6303, 3306, 2971, 1606, 4704, 6300, 1193, 7750, 6972, 2404, 5068, 16432] SNP IDs counts: [8126, 963, 1409, 743, 2109, 1181, 575, 6058, 3327, 9909, 303, 2998, 6303, 3306, 2971, 1606, 4704, 6300, 1193, 7750, 6972, 2404, 5068, 16432] Critical gap: 417010bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 7.62Mbp, 8.33Mbp, 9.14Mbp, 9.87Mbp, 10.99Mbp, 11.70Mbp, 12.02Mbp, 15.64Mbp, 17.45Mbp, 23.12Mbp, 23.28Mbp, 24.91Mbp, 28.42Mbp, 30.20Mbp, 31.87Mbp, 32.76Mbp, 35.60Mbp, 39.07Mbp, 39.99Mbp, 44.25Mbp, 47.98Mbp, 49.31Mbp, 52.34Mbp, 61.43Mbp] 2025-01-31 10:02:54,396 DEBUG chr19 time: 96.6996104340069 s 2025-01-31 10:02:54,457 DEBUG Processing 328/514 atomic regions from SNP 98248 to 98848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:54,480 DEBUG chr19: Fitting background model for 24 segments 2025-01-31 10:02:54,718 DEBUG Processing 329/514 atomic regions from SNP 98548 to 99148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:54,975 DEBUG Processing 330/514 atomic regions from SNP 98848 to 99448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:55,233 DEBUG Processing 331/514 atomic regions from SNP 99148 to 99748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:55,490 DEBUG Processing 332/514 atomic regions from SNP 99448 to 100048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:55,747 DEBUG Processing 333/514 atomic regions from SNP 99748 to 100348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:56,004 DEBUG Processing 334/514 atomic regions from SNP 100048 to 100648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:56,261 DEBUG Processing 335/514 atomic regions from SNP 100348 to 100948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:56,521 DEBUG Processing 336/514 atomic regions from SNP 100648 to 101248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:56,801 DEBUG Processing 337/514 atomic regions from SNP 100948 to 101548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:57,093 DEBUG Processing 338/514 atomic regions from SNP 101248 to 101848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:57,379 DEBUG Processing 339/514 atomic regions from SNP 101548 to 102148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:57,648 DEBUG Processing 340/514 atomic regions from SNP 101848 to 102448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:57,930 DEBUG Processing 341/514 atomic regions from SNP 102148 to 102748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:58,218 DEBUG Processing 342/514 atomic regions from SNP 102448 to 103048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:58,508 DEBUG Processing 343/514 atomic regions from SNP 102748 to 103348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:58,802 DEBUG Processing 344/514 atomic regions from SNP 103048 to 103648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:59,085 DEBUG Processing 345/514 atomic regions from SNP 103348 to 103948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:59,348 DEBUG Processing 346/514 atomic regions from SNP 103648 to 104248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:59,610 DEBUG Processing 347/514 atomic regions from SNP 103948 to 104548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:59,871 DEBUG Processing 348/514 atomic regions from SNP 104248 to 104848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:00,134 DEBUG Processing 349/514 atomic regions from SNP 104548 to 105148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:00,399 DEBUG Processing 350/514 atomic regions from SNP 104848 to 105448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:00,654 DEBUG Processing 351/514 atomic regions from SNP 105148 to 105748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:00,913 DEBUG Processing 352/514 atomic regions from SNP 105448 to 106048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:01,170 DEBUG Processing 353/514 atomic regions from SNP 105748 to 106348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:01,430 DEBUG Processing 354/514 atomic regions from SNP 106048 to 106648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:01,689 DEBUG Processing 355/514 atomic regions from SNP 106348 to 106948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:01,958 DEBUG Processing 356/514 atomic regions from SNP 106648 to 107248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:02,242 DEBUG Processing 357/514 atomic regions from SNP 106948 to 107548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:02,498 DEBUG Processing 358/514 atomic regions from SNP 107248 to 107848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:02,756 DEBUG Processing 359/514 atomic regions from SNP 107548 to 108148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:03,013 DEBUG Processing 360/514 atomic regions from SNP 107848 to 108448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:03,286 DEBUG Processing 361/514 atomic regions from SNP 108148 to 108748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:03,568 DEBUG Processing 362/514 atomic regions from SNP 108448 to 109048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:03,826 DEBUG Processing 363/514 atomic regions from SNP 108748 to 109348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:04,083 DEBUG Processing 364/514 atomic regions from SNP 109048 to 109648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:04,341 DEBUG Processing 365/514 atomic regions from SNP 109348 to 109948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:04,598 DEBUG Processing 366/514 atomic regions from SNP 109648 to 110248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:04,856 DEBUG Processing 367/514 atomic regions from SNP 109948 to 110548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:05,115 DEBUG Processing 368/514 atomic regions from SNP 110248 to 110848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:05,373 DEBUG Processing 369/514 atomic regions from SNP 110548 to 111148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:05,631 DEBUG Processing 370/514 atomic regions from SNP 110848 to 111448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:05,889 DEBUG Processing 371/514 atomic regions from SNP 111148 to 111748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:06,148 DEBUG Processing 372/514 atomic regions from SNP 111448 to 112048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:06,407 DEBUG Processing 373/514 atomic regions from SNP 111748 to 112348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:06,666 DEBUG Processing 374/514 atomic regions from SNP 112048 to 112648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:06,926 DEBUG Processing 375/514 atomic regions from SNP 112348 to 112948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:07,184 DEBUG Processing 376/514 atomic regions from SNP 112648 to 113248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:07,442 DEBUG Processing 377/514 atomic regions from SNP 112948 to 113548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:07,713 DEBUG Processing 378/514 atomic regions from SNP 113248 to 113848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:08,003 DEBUG Processing 379/514 atomic regions from SNP 113548 to 114148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:08,291 DEBUG Processing 380/514 atomic regions from SNP 113848 to 114448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:08,572 DEBUG Processing 381/514 atomic regions from SNP 114148 to 114748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:08,852 DEBUG Processing 382/514 atomic regions from SNP 114448 to 115048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:09,110 DEBUG Processing 383/514 atomic regions from SNP 114748 to 115348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:09,366 DEBUG Processing 384/514 atomic regions from SNP 115048 to 115648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:09,621 DEBUG Processing 385/514 atomic regions from SNP 115348 to 115948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:09,875 DEBUG Processing 386/514 atomic regions from SNP 115648 to 116248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:10,128 DEBUG Processing 387/514 atomic regions from SNP 115948 to 116548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:10,383 DEBUG Processing 388/514 atomic regions from SNP 116248 to 116848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:10,642 DEBUG Processing 389/514 atomic regions from SNP 116548 to 117148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:10,899 DEBUG Processing 390/514 atomic regions from SNP 116848 to 117448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:11,155 DEBUG Processing 391/514 atomic regions from SNP 117148 to 117748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:11,411 DEBUG Processing 392/514 atomic regions from SNP 117448 to 118048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:11,667 DEBUG Processing 393/514 atomic regions from SNP 117748 to 118348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:11,924 DEBUG Processing 394/514 atomic regions from SNP 118048 to 118648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:12,181 DEBUG Processing 395/514 atomic regions from SNP 118348 to 118948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:12,438 DEBUG Processing 396/514 atomic regions from SNP 118648 to 119248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:12,694 DEBUG Processing 397/514 atomic regions from SNP 118948 to 119548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:12,951 DEBUG Processing 398/514 atomic regions from SNP 119248 to 119848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:13,240 DEBUG Processing 399/514 atomic regions from SNP 119548 to 120148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:13,508 DEBUG Processing 400/514 atomic regions from SNP 119848 to 120448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:13,766 DEBUG Processing 401/514 atomic regions from SNP 120148 to 120748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:14,023 DEBUG Processing 402/514 atomic regions from SNP 120448 to 121048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:14,280 DEBUG Processing 403/514 atomic regions from SNP 120748 to 121348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:14,538 DEBUG Processing 404/514 atomic regions from SNP 121048 to 121648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:14,795 DEBUG Processing 405/514 atomic regions from SNP 121348 to 121948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:15,053 DEBUG Processing 406/514 atomic regions from SNP 121648 to 122248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:15,311 DEBUG Processing 407/514 atomic regions from SNP 121948 to 122548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:15,569 DEBUG Processing 408/514 atomic regions from SNP 122248 to 122848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:15,829 DEBUG Processing 409/514 atomic regions from SNP 122548 to 123148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:16,087 DEBUG Processing 410/514 atomic regions from SNP 122848 to 123448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:16,345 DEBUG Processing 411/514 atomic regions from SNP 123148 to 123748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:16,604 DEBUG Processing 412/514 atomic regions from SNP 123448 to 124048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:16,862 DEBUG Processing 413/514 atomic regions from SNP 123748 to 124348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:17,121 DEBUG Processing 414/514 atomic regions from SNP 124048 to 124648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:17,378 DEBUG Processing 415/514 atomic regions from SNP 124348 to 124948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:17,637 DEBUG Processing 416/514 atomic regions from SNP 124648 to 125248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:17,910 DEBUG Processing 417/514 atomic regions from SNP 124948 to 125548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:18,184 DEBUG Processing 418/514 atomic regions from SNP 125248 to 125848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:18,441 DEBUG Processing 419/514 atomic regions from SNP 125548 to 126148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:18,701 DEBUG Processing 420/514 atomic regions from SNP 125848 to 126448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:18,966 DEBUG Processing 421/514 atomic regions from SNP 126148 to 126748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:19,224 DEBUG Processing 422/514 atomic regions from SNP 126448 to 127048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:19,489 DEBUG Processing 423/514 atomic regions from SNP 126748 to 127348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:19,775 DEBUG Processing 424/514 atomic regions from SNP 127048 to 127648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:20,055 DEBUG Processing 425/514 atomic regions from SNP 127348 to 127948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:20,330 DEBUG Processing 426/514 atomic regions from SNP 127648 to 128248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:20,587 DEBUG Processing 427/514 atomic regions from SNP 127948 to 128548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:20,847 DEBUG Processing 428/514 atomic regions from SNP 128248 to 128848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:21,104 DEBUG Processing 429/514 atomic regions from SNP 128548 to 129148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:21,362 DEBUG Processing 430/514 atomic regions from SNP 128848 to 129448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:21,619 DEBUG Processing 431/514 atomic regions from SNP 129148 to 129748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:21,877 DEBUG Processing 432/514 atomic regions from SNP 129448 to 130048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:22,153 DEBUG Processing 433/514 atomic regions from SNP 129748 to 130348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:22,415 DEBUG Processing 434/514 atomic regions from SNP 130048 to 130648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:22,672 DEBUG Processing 435/514 atomic regions from SNP 130348 to 130948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:22,930 DEBUG Processing 436/514 atomic regions from SNP 130648 to 131248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:23,195 DEBUG Processing 437/514 atomic regions from SNP 130948 to 131548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:23,479 DEBUG Processing 438/514 atomic regions from SNP 131248 to 131848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:23,738 DEBUG Processing 439/514 atomic regions from SNP 131548 to 132148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:23,996 DEBUG Processing 440/514 atomic regions from SNP 131848 to 132448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:24,254 DEBUG Processing 441/514 atomic regions from SNP 132148 to 132748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:24,545 DEBUG Processing 442/514 atomic regions from SNP 132448 to 133048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:24,825 DEBUG Processing 443/514 atomic regions from SNP 132748 to 133348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:25,105 DEBUG Processing 444/514 atomic regions from SNP 133048 to 133648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:25,380 DEBUG Processing 445/514 atomic regions from SNP 133348 to 133948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:25,637 DEBUG Processing 446/514 atomic regions from SNP 133648 to 134248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:25,897 DEBUG Processing 447/514 atomic regions from SNP 133948 to 134548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:26,159 DEBUG Processing 448/514 atomic regions from SNP 134248 to 134848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:26,419 DEBUG Processing 449/514 atomic regions from SNP 134548 to 135148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:26,681 DEBUG Processing 450/514 atomic regions from SNP 134848 to 135448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:26,941 DEBUG Processing 451/514 atomic regions from SNP 135148 to 135748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:27,201 DEBUG Processing 452/514 atomic regions from SNP 135448 to 136048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:27,464 DEBUG Processing 453/514 atomic regions from SNP 135748 to 136348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:27,726 DEBUG Processing 454/514 atomic regions from SNP 136048 to 136648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:27,987 DEBUG Processing 455/514 atomic regions from SNP 136348 to 136948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:28,272 DEBUG Processing 456/514 atomic regions from SNP 136648 to 137248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:28,566 DEBUG Processing 457/514 atomic regions from SNP 136948 to 137548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:28,828 DEBUG Processing 458/514 atomic regions from SNP 137248 to 137848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:29,097 DEBUG Processing 459/514 atomic regions from SNP 137548 to 138148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:29,359 DEBUG Processing 460/514 atomic regions from SNP 137848 to 138448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:29,621 DEBUG Processing 461/514 atomic regions from SNP 138148 to 138748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:29,883 DEBUG Processing 462/514 atomic regions from SNP 138448 to 139048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:30,145 DEBUG Processing 463/514 atomic regions from SNP 138748 to 139348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:30,408 DEBUG Processing 464/514 atomic regions from SNP 139048 to 139648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:30,671 DEBUG Processing 465/514 atomic regions from SNP 139348 to 139948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:30,933 DEBUG Processing 466/514 atomic regions from SNP 139648 to 140248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:31,196 DEBUG Processing 467/514 atomic regions from SNP 139948 to 140548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:31,458 DEBUG Processing 468/514 atomic regions from SNP 140248 to 140848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:31,720 DEBUG Processing 469/514 atomic regions from SNP 140548 to 141148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:31,982 DEBUG Processing 470/514 atomic regions from SNP 140848 to 141448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:32,264 DEBUG Processing 471/514 atomic regions from SNP 141148 to 141748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:32,551 DEBUG Processing 472/514 atomic regions from SNP 141448 to 142048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:32,813 DEBUG Processing 473/514 atomic regions from SNP 141748 to 142348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:33,075 DEBUG Processing 474/514 atomic regions from SNP 142048 to 142648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:33,337 DEBUG Processing 475/514 atomic regions from SNP 142348 to 142948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:33,600 DEBUG Processing 476/514 atomic regions from SNP 142648 to 143248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:33,863 DEBUG Processing 477/514 atomic regions from SNP 142948 to 143548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:34,126 DEBUG Processing 478/514 atomic regions from SNP 143248 to 143848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:34,387 DEBUG Processing 479/514 atomic regions from SNP 143548 to 144148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:34,650 DEBUG Processing 480/514 atomic regions from SNP 143848 to 144448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:34,912 DEBUG Processing 481/514 atomic regions from SNP 144148 to 144748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:35,176 DEBUG Processing 482/514 atomic regions from SNP 144448 to 145048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:35,447 DEBUG Processing 483/514 atomic regions from SNP 144748 to 145348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:35,721 DEBUG Processing 484/514 atomic regions from SNP 145048 to 145648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:36,005 DEBUG Processing 485/514 atomic regions from SNP 145348 to 145948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:36,284 DEBUG Processing 486/514 atomic regions from SNP 145648 to 146248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:36,549 DEBUG Processing 487/514 atomic regions from SNP 145948 to 146548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:36,816 DEBUG Processing 488/514 atomic regions from SNP 146248 to 146848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:37,080 DEBUG Processing 489/514 atomic regions from SNP 146548 to 147148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:37,345 DEBUG Processing 490/514 atomic regions from SNP 146848 to 147448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:37,614 DEBUG Processing 491/514 atomic regions from SNP 147148 to 147748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:37,878 DEBUG Processing 492/514 atomic regions from SNP 147448 to 148048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:38,142 DEBUG Processing 493/514 atomic regions from SNP 147748 to 148348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:38,407 DEBUG Processing 494/514 atomic regions from SNP 148048 to 148648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:38,672 DEBUG Processing 495/514 atomic regions from SNP 148348 to 148948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:38,936 DEBUG Processing 496/514 atomic regions from SNP 148648 to 149248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:39,199 DEBUG Processing 497/514 atomic regions from SNP 148948 to 149548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:39,465 DEBUG Processing 498/514 atomic regions from SNP 149248 to 149848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:39,728 DEBUG Processing 499/514 atomic regions from SNP 149548 to 150148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:39,993 DEBUG Processing 500/514 atomic regions from SNP 149848 to 150448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:40,257 DEBUG Processing 501/514 atomic regions from SNP 150148 to 150748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:40,522 DEBUG Processing 502/514 atomic regions from SNP 150448 to 151048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:40,786 DEBUG Processing 503/514 atomic regions from SNP 150748 to 151348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:41,051 DEBUG Processing 504/514 atomic regions from SNP 151048 to 151648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:41,315 DEBUG Processing 505/514 atomic regions from SNP 151348 to 151948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:41,579 DEBUG Processing 506/514 atomic regions from SNP 151648 to 152248 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:41,843 DEBUG Processing 507/514 atomic regions from SNP 151948 to 152548 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:42,107 DEBUG Processing 508/514 atomic regions from SNP 152248 to 152848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:42,372 DEBUG Processing 509/514 atomic regions from SNP 152548 to 153148 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:42,636 DEBUG Processing 510/514 atomic regions from SNP 152848 to 153448 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:42,900 DEBUG Processing 511/514 atomic regions from SNP 153148 to 153748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:43,164 DEBUG Processing 512/514 atomic regions from SNP 153448 to 154048 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:43,429 DEBUG Processing 513/514 atomic regions from SNP 153748 to 154348 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:43,694 DEBUG Processing 514/514 atomic regions from SNP 154048 to 154648 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:43,896 DEBUG Unique SNPs positions in subchromosome 1: 154649 2025-01-31 10:03:45,014 DEBUG Subchromosome time: 155.70971074001864, subchromosome SNPs: 154649 2025-01-31 10:03:45,014 DEBUG Estimated BADs: [1.92, 0.48, 1.92, 0.48, 3.84, 7.69, 3.84, 1.92, 0.96, 1.92, 7.69, 1.92, 7.69, 1.92, 0.64, 3.84, 1.92, 0.96] SNP counts: [25367, 3014, 14151, 6969, 4658, 4983, 4808, 15461, 14469, 6943, 2326, 10216, 875, 6602, 3937, 8368, 14086, 7416] SNP IDs counts: [25367, 3014, 14151, 6969, 4658, 4983, 4808, 15461, 14469, 6943, 2326, 10216, 875, 6602, 3937, 8368, 14086, 7416] Critical gap: 511426bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 17.60Mbp, 19.53Mbp, 27.57Mbp, 31.61Mbp, 34.22Mbp, 36.82Mbp, 39.48Mbp, 48.25Mbp, 56.55Mbp, 60.46Mbp, 61.67Mbp, 67.19Mbp, 67.65Mbp, 71.30Mbp, 73.57Mbp, 78.13Mbp, 85.99Mbp, 90.70Mbp] 2025-01-31 10:03:45,014 DEBUG chr18 time: 155.71020352398045 s 2025-01-31 10:03:45,152 DEBUG chr18: Fitting background model for 18 segments 2025-01-31 10:04:08,372 DEBUG Results of fit_background_model emitted. 2025-01-31 10:04:08,555 INFO Signal to noise fit: SPOT=0.43±0.18 2025-01-31 10:04:08,559 INFO Final SPOT score: 0.43±0.18. Refitted 0 segments. 2025-01-31 10:04:08,638 INFO Estimating per-bp parameters of background model 2025-01-31 10:04:08,646 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:04:08,646 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 10:04:17,143 DEBUG chr3:3000000-8901251: Successfully fit background model for 5,108,840 bp. Use segment r for 0 bp 2025-01-31 10:04:17,267 DEBUG chr3:8901251-10207751: Successfully fit background model for 1,201,710 bp. Use segment r for 0 bp 2025-01-31 10:04:17,549 DEBUG chr4:3050000-8635751: Successfully fit background model for 4,714,779 bp. Use segment r for 0 bp 2025-01-31 10:04:17,965 DEBUG chr2:3051000-7371751: Successfully fit background model for 4,084,380 bp. Use segment r for 0 bp 2025-01-31 10:04:18,052 DEBUG chrX:3055000-7564751: Successfully fit background model for 2,017,003 bp. Use segment r for 1,709 bp 2025-01-31 10:04:18,098 DEBUG chrX:7564751-7948751: Successfully fit background model for 375,272 bp. Use segment r for 0 bp 2025-01-31 10:04:18,129 DEBUG chr2:7371751-9205251: Successfully fit background model for 1,615,423 bp. Use segment r for 0 bp 2025-01-31 10:04:18,488 DEBUG chr4:8635751-16328751: Successfully fit background model for 6,934,964 bp. Use segment r for 0 bp 2025-01-31 10:04:18,764 DEBUG chr3:10207751-19158751: Successfully fit background model for 7,535,598 bp. Use segment r for 0 bp 2025-01-31 10:04:18,849 DEBUG chr3:19158751-19892251: Successfully fit background model for 680,040 bp. Use segment r for 0 bp 2025-01-31 10:04:18,859 DEBUG chr2:9205251-15326751: Successfully fit background model for 5,601,274 bp. Use segment r for 0 bp 2025-01-31 10:04:19,023 DEBUG chrX:7948751-14693251: Successfully fit background model for 5,923,320 bp. Use segment r for 0 bp 2025-01-31 10:04:19,100 DEBUG chr2:15326751-18025751: Successfully fit background model for 2,401,886 bp. Use segment r for 0 bp 2025-01-31 10:04:19,127 DEBUG chr2:18025751-18098251: Successfully fit background model for 71,397 bp. Use segment r for 0 bp 2025-01-31 10:04:19,758 DEBUG chrX:14693251-21438751: Successfully fit background model for 5,802,104 bp. Use segment r for 0 bp 2025-01-31 10:04:19,759 DEBUG chr1:3000500-9540001: Successfully fit background model for 5,696,417 bp. Use segment r for 0 bp 2025-01-31 10:04:19,816 DEBUG chr1:9540001-9994751: Successfully fit background model for 438,256 bp. Use segment r for 0 bp 2025-01-31 10:04:19,844 DEBUG chr2:18098251-24916251: Successfully fit background model for 6,069,303 bp. Use segment r for 0 bp 2025-01-31 10:04:20,534 DEBUG chrX:21438751-26915001: Successfully fit background model for 2,860,634 bp. Use segment r for 2,091 bp 2025-01-31 10:04:20,569 DEBUG chr3:19892251-30591251: Successfully fit background model for 9,538,666 bp. Use segment r for 0 bp 2025-01-31 10:04:20,606 DEBUG chr2:24916251-32818751: Successfully fit background model for 7,662,680 bp. Use segment r for 0 bp 2025-01-31 10:04:20,608 DEBUG chr1:9994751-16612751: Successfully fit background model for 5,962,605 bp. Use segment r for 0 bp 2025-01-31 10:04:20,613 DEBUG chr3:30591251-30808751: Successfully fit background model for 211,802 bp. Use segment r for 0 bp 2025-01-31 10:04:20,903 DEBUG chr5:3002500-20658751: Successfully fit background model for 14,277,383 bp. Use segment r for 1,239 bp 2025-01-31 10:04:20,904 DEBUG chr2:32818751-36265251: Successfully fit background model for 3,365,480 bp. Use segment r for 0 bp 2025-01-31 10:04:20,995 DEBUG chr2:36265251-37047251: Successfully fit background model for 647,321 bp. Use segment r for 0 bp 2025-01-31 10:04:21,192 DEBUG chr4:16328751-32789251: Successfully fit background model for 14,618,044 bp. Use segment r for 0 bp 2025-01-31 10:04:21,251 DEBUG chr2:37047251-39382251: Successfully fit background model for 2,185,577 bp. Use segment r for 0 bp 2025-01-31 10:04:21,330 DEBUG chr5:20658751-24322251: Successfully fit background model for 3,377,982 bp. Use segment r for 0 bp 2025-01-31 10:04:21,394 DEBUG chr4:32789251-34719251: Successfully fit background model for 1,805,543 bp. Use segment r for 0 bp 2025-01-31 10:04:21,397 DEBUG chr5:24322251-24860751: Successfully fit background model for 519,898 bp. Use segment r for 0 bp 2025-01-31 10:04:21,826 DEBUG chr2:39382251-44536251: Successfully fit background model for 4,711,521 bp. Use segment r for 0 bp 2025-01-31 10:04:21,873 DEBUG chrX:31132500-39093251: Successfully fit background model for 2,977,277 bp. Use segment r for 2,301 bp 2025-01-31 10:04:21,923 DEBUG chr2:44536251-45491251: Successfully fit background model for 914,612 bp. Use segment r for 0 bp 2025-01-31 10:04:22,054 DEBUG chr4:34719251-40134251: Successfully fit background model for 4,823,326 bp. Use segment r for 0 bp 2025-01-31 10:04:22,066 DEBUG chr5:24860751-30457751: Successfully fit background model for 5,015,023 bp. Use segment r for 0 bp 2025-01-31 10:04:22,180 DEBUG chr2:45491251-48306751: Successfully fit background model for 2,544,279 bp. Use segment r for 0 bp 2025-01-31 10:04:22,214 DEBUG chr4:40134251-41855501: Successfully fit background model for 1,562,054 bp. Use segment r for 0 bp 2025-01-31 10:04:22,689 DEBUG chr2:48306751-53398251: Successfully fit background model for 4,818,005 bp. Use segment r for 0 bp 2025-01-31 10:04:22,732 DEBUG chr4:42706000-47493751: Successfully fit background model for 4,530,800 bp. Use segment r for 0 bp 2025-01-31 10:04:22,832 DEBUG chrX:39093251-48207251: Successfully fit background model for 7,896,149 bp. Use segment r for 0 bp 2025-01-31 10:04:22,847 DEBUG chr4:47493751-48695251: Successfully fit background model for 1,151,929 bp. Use segment r for 0 bp 2025-01-31 10:04:22,948 DEBUG chr1:16612751-30768251: Successfully fit background model for 12,638,106 bp. Use segment r for 0 bp 2025-01-31 10:04:22,973 DEBUG chr2:53398251-56523251: Successfully fit background model for 2,680,277 bp. Use segment r for 0 bp 2025-01-31 10:04:22,999 DEBUG chr1:30768251-30979251: Successfully fit background model for 190,443 bp. Use segment r for 0 bp 2025-01-31 10:04:23,055 DEBUG chrX:48207251-50549251: Successfully fit background model for 1,996,106 bp. Use segment r for 0 bp 2025-01-31 10:04:23,105 DEBUG chrX:50549251-50635751: Successfully fit background model for 78,897 bp. Use segment r for 0 bp 2025-01-31 10:04:23,239 DEBUG chr1:30979251-33461751: Successfully fit background model for 2,173,527 bp. Use segment r for 0 bp 2025-01-31 10:04:23,272 DEBUG chr5:30457751-39057751: Successfully fit background model for 8,194,372 bp. Use segment r for 0 bp 2025-01-31 10:04:23,325 DEBUG chr4:48695251-52802251: Successfully fit background model for 3,624,687 bp. Use segment r for 0 bp 2025-01-31 10:04:23,422 DEBUG chr3:30808751-41778251: Successfully fit background model for 10,046,328 bp. Use segment r for 2,823 bp 2025-01-31 10:04:23,475 DEBUG chr5:39057751-41236751: Successfully fit background model for 1,988,419 bp. Use segment r for 0 bp 2025-01-31 10:04:23,657 DEBUG chr2:56523251-62654251: Successfully fit background model for 5,684,104 bp. Use segment r for 0 bp 2025-01-31 10:04:23,903 DEBUG chr1:33461751-39356251: Successfully fit background model for 5,622,090 bp. Use segment r for 0 bp 2025-01-31 10:04:23,987 DEBUG chr5:41236751-46320501: Successfully fit background model for 4,551,416 bp. Use segment r for 0 bp 2025-01-31 10:04:24,106 DEBUG chr2:62654251-67797751: Successfully fit background model for 4,752,660 bp. Use segment r for 0 bp 2025-01-31 10:04:24,475 DEBUG chr5:46320501-51097751: Successfully fit background model for 4,380,768 bp. Use segment r for 0 bp 2025-01-31 10:04:24,757 DEBUG chr5:51097751-54329751: Successfully fit background model for 3,104,832 bp. Use segment r for 0 bp 2025-01-31 10:04:24,947 DEBUG chr1:39356251-47521251: Successfully fit background model for 7,408,743 bp. Use segment r for 0 bp 2025-01-31 10:04:25,219 DEBUG chr1:47521251-50455251: Successfully fit background model for 2,549,228 bp. Use segment r for 0 bp 2025-01-31 10:04:25,735 DEBUG chr3:41778251-51154751: Successfully fit background model for 8,282,953 bp. Use segment r for 105 bp 2025-01-31 10:04:25,797 DEBUG chr3:51154751-51601251: Successfully fit background model for 433,716 bp. Use segment r for 0 bp 2025-01-31 10:04:26,183 DEBUG chr2:67797751-80915251: Successfully fit background model for 12,512,874 bp. Use segment r for 0 bp 2025-01-31 10:04:26,211 DEBUG chr5:54329751-63457251: Successfully fit background model for 8,080,059 bp. Use segment r for 0 bp 2025-01-31 10:04:26,312 DEBUG chr2:80915251-82072251: Successfully fit background model for 1,003,591 bp. Use segment r for 0 bp 2025-01-31 10:04:26,351 DEBUG chr4:52802251-63975251: Successfully fit background model for 8,891,430 bp. Use segment r for 3,777 bp 2025-01-31 10:04:26,553 DEBUG chr2:82072251-84649751: Successfully fit background model for 2,167,349 bp. Use segment r for 0 bp 2025-01-31 10:04:26,645 DEBUG chr2:84649751-85362751: Successfully fit background model for 672,967 bp. Use segment r for 0 bp 2025-01-31 10:04:26,680 DEBUG chr1:50455251-59114251: Successfully fit background model for 8,005,862 bp. Use segment r for 0 bp 2025-01-31 10:04:26,724 DEBUG chr5:63457251-68427751: Successfully fit background model for 4,704,983 bp. Use segment r for 0 bp 2025-01-31 10:04:27,059 DEBUG chrX:50635751-73444251: Successfully fit background model for 18,523,561 bp. Use segment r for 0 bp 2025-01-31 10:04:27,135 DEBUG chr2:85362751-89464251: Successfully fit background model for 3,585,921 bp. Use segment r for 0 bp 2025-01-31 10:04:27,157 DEBUG chr5:68427751-71780751: Successfully fit background model for 2,951,781 bp. Use segment r for 0 bp 2025-01-31 10:04:27,182 DEBUG chrX:73444251-74335251: Successfully fit background model for 860,123 bp. Use segment r for 0 bp 2025-01-31 10:04:27,264 DEBUG chr1:59114251-64521501: Successfully fit background model for 5,089,844 bp. Use segment r for 0 bp 2025-01-31 10:04:27,265 DEBUG chr2:89464251-90836251: Successfully fit background model for 1,035,003 bp. Use segment r for 0 bp 2025-01-31 10:04:27,351 DEBUG chr1:64521501-65215251: Successfully fit background model for 658,287 bp. Use segment r for 0 bp 2025-01-31 10:04:27,429 DEBUG chr2:90836251-92315251: Successfully fit background model for 1,449,400 bp. Use segment r for 0 bp 2025-01-31 10:04:27,532 DEBUG chrX:74335251-77424751: Successfully fit background model for 2,373,917 bp. Use segment r for 0 bp 2025-01-31 10:04:27,680 DEBUG chr2:92315251-94887751: Successfully fit background model for 2,466,187 bp. Use segment r for 0 bp 2025-01-31 10:04:27,822 DEBUG chr5:71780751-77870751: Successfully fit background model for 5,758,585 bp. Use segment r for 0 bp 2025-01-31 10:04:28,160 DEBUG chr1:65215251-72221751: Successfully fit background model for 6,460,122 bp. Use segment r for 0 bp 2025-01-31 10:04:28,187 DEBUG chr1:72221751-72313751: Successfully fit background model for 89,057 bp. Use segment r for 0 bp 2025-01-31 10:04:28,325 DEBUG chr2:94887751-101031001: Successfully fit background model for 5,112,172 bp. Use segment r for 0 bp 2025-01-31 10:04:28,394 DEBUG chr5:77870751-83853251: Successfully fit background model for 5,351,109 bp. Use segment r for 0 bp 2025-01-31 10:04:28,395 DEBUG chr1:72313751-74234751: Successfully fit background model for 1,819,365 bp. Use segment r for 0 bp 2025-01-31 10:04:28,498 DEBUG chr1:74234751-75341751: Successfully fit background model for 1,011,290 bp. Use segment r for 0 bp 2025-01-31 10:04:28,766 DEBUG chr5:83853251-88006251: Successfully fit background model for 3,701,760 bp. Use segment r for 0 bp 2025-01-31 10:04:28,979 DEBUG chr2:101031001-107903751: Successfully fit background model for 6,513,902 bp. Use segment r for 0 bp 2025-01-31 10:04:29,205 DEBUG chr3:51601251-71187001: Successfully fit background model for 17,727,458 bp. Use segment r for 0 bp 2025-01-31 10:04:29,359 DEBUG chr2:107903751-112237751: Successfully fit background model for 3,800,780 bp. Use segment r for 0 bp 2025-01-31 10:04:29,394 DEBUG chr2:112237751-112351251: Successfully fit background model for 106,053 bp. Use segment r for 0 bp 2025-01-31 10:04:29,523 DEBUG chr4:63975251-81730251: Successfully fit background model for 15,737,452 bp. Use segment r for 0 bp 2025-01-31 10:04:29,743 DEBUG chrX:77424751-91307251: Successfully fit background model for 12,010,804 bp. Use segment r for 0 bp 2025-01-31 10:04:29,985 DEBUG chr4:81730251-86621251: Successfully fit background model for 4,544,821 bp. Use segment r for 0 bp 2025-01-31 10:04:30,073 DEBUG chrX:91307251-94823501: Successfully fit background model for 2,833,136 bp. Use segment r for 0 bp 2025-01-31 10:04:30,095 DEBUG chr2:112351251-118529251: Successfully fit background model for 5,800,714 bp. Use segment r for 0 bp 2025-01-31 10:04:30,167 DEBUG chr1:75341751-84837751: Successfully fit background model for 8,763,388 bp. Use segment r for 0 bp 2025-01-31 10:04:30,173 DEBUG chr3:71187001-79518751: Successfully fit background model for 7,432,671 bp. Use segment r for 0 bp 2025-01-31 10:04:30,201 DEBUG chr2:118529251-119582251: Successfully fit background model for 1,025,179 bp. Use segment r for 0 bp 2025-01-31 10:04:30,290 DEBUG chr4:86621251-89556751: Successfully fit background model for 2,616,433 bp. Use segment r for 0 bp 2025-01-31 10:04:30,311 DEBUG chr1:84837751-86208251: Successfully fit background model for 835,460 bp. Use segment r for 0 bp 2025-01-31 10:04:30,361 DEBUG chr1:86208251-86520251: Successfully fit background model for 302,650 bp. Use segment r for 0 bp 2025-01-31 10:04:30,575 DEBUG chr3:79518751-83973251: Successfully fit background model for 4,099,136 bp. Use segment r for 0 bp 2025-01-31 10:04:30,588 DEBUG chr4:89556751-92956251: Successfully fit background model for 2,976,761 bp. Use segment r for 0 bp 2025-01-31 10:04:30,600 DEBUG chr2:119582251-123001251: Successfully fit background model for 3,218,297 bp. Use segment r for 0 bp 2025-01-31 10:04:30,689 DEBUG chr2:123001251-123922251: Successfully fit background model for 830,068 bp. Use segment r for 0 bp 2025-01-31 10:04:30,853 DEBUG chrX:94823501-101247751: Successfully fit background model for 5,571,787 bp. Use segment r for 0 bp 2025-01-31 10:04:30,914 DEBUG chr3:83973251-87728751: Successfully fit background model for 3,577,678 bp. Use segment r for 0 bp 2025-01-31 10:04:30,985 DEBUG chr2:123922251-127245251: Successfully fit background model for 3,131,687 bp. Use segment r for 0 bp 2025-01-31 10:04:31,164 DEBUG chr1:86520251-93606251: Successfully fit background model for 6,800,249 bp. Use segment r for 0 bp 2025-01-31 10:04:31,198 DEBUG chr3:87728751-90410751: Successfully fit background model for 2,546,770 bp. Use segment r for 0 bp 2025-01-31 10:04:31,202 DEBUG chr1:93606251-93829001: Successfully fit background model for 217,613 bp. Use segment r for 0 bp 2025-01-31 10:04:31,236 DEBUG chr5:88006251-97406751: Successfully fit background model for 6,610,763 bp. Use segment r for 2,188 bp 2025-01-31 10:04:31,278 DEBUG chrX:101247751-106010251: Successfully fit background model for 4,205,335 bp. Use segment r for 0 bp 2025-01-31 10:04:31,468 DEBUG chr2:127245251-132246251: Successfully fit background model for 4,801,518 bp. Use segment r for 0 bp 2025-01-31 10:04:31,557 DEBUG chr3:90410751-94359751: Successfully fit background model for 3,038,478 bp. Use segment r for 0 bp 2025-01-31 10:04:31,805 DEBUG chr3:94359751-97131751: Successfully fit background model for 2,550,242 bp. Use segment r for 0 bp 2025-01-31 10:04:31,908 DEBUG chr2:132246251-137163251: Successfully fit background model for 4,606,532 bp. Use segment r for 0 bp 2025-01-31 10:04:31,993 DEBUG chr5:97406751-103649251: Successfully fit background model for 5,871,293 bp. Use segment r for 0 bp 2025-01-31 10:04:32,045 DEBUG chr5:103649251-103876751: Successfully fit background model for 225,115 bp. Use segment r for 0 bp 2025-01-31 10:04:32,418 DEBUG chr5:103876751-107846751: Successfully fit background model for 3,595,596 bp. Use segment r for 0 bp 2025-01-31 10:04:32,543 DEBUG chr5:107846751-109170001: Successfully fit background model for 1,188,745 bp. Use segment r for 0 bp 2025-01-31 10:04:32,648 DEBUG chr5:109170001-110094501: Successfully fit background model for 759,391 bp. Use segment r for 0 bp 2025-01-31 10:04:32,713 DEBUG chr2:137163251-143831751: Successfully fit background model for 6,168,985 bp. Use segment r for 0 bp 2025-01-31 10:04:33,011 DEBUG chr4:92956251-106558251: Successfully fit background model for 12,626,188 bp. Use segment r for 0 bp 2025-01-31 10:04:33,055 DEBUG chr5:110094501-113730001: Successfully fit background model for 3,539,474 bp. Use segment r for 0 bp 2025-01-31 10:04:33,217 DEBUG chr5:113730001-115489251: Successfully fit background model for 1,711,348 bp. Use segment r for 0 bp 2025-01-31 10:04:33,367 DEBUG chr4:106558251-110402751: Successfully fit background model for 3,652,633 bp. Use segment r for 0 bp 2025-01-31 10:04:33,392 DEBUG chr1:93829001-105977251: Successfully fit background model for 10,604,103 bp. Use segment r for 0 bp 2025-01-31 10:04:33,600 DEBUG chr1:105977251-108024251: Successfully fit background model for 1,859,367 bp. Use segment r for 0 bp 2025-01-31 10:04:33,705 DEBUG chr4:110402751-113961751: Successfully fit background model for 3,120,314 bp. Use segment r for 0 bp 2025-01-31 10:04:33,730 DEBUG chr2:143831751-152309251: Successfully fit background model for 7,620,874 bp. Use segment r for 0 bp 2025-01-31 10:04:33,753 DEBUG chr5:115489251-120455251: Successfully fit background model for 4,867,033 bp. Use segment r for 0 bp 2025-01-31 10:04:33,820 DEBUG chr3:97131751-109872751: Successfully fit background model for 11,827,501 bp. Use segment r for 0 bp 2025-01-31 10:04:33,874 DEBUG chr4:113961751-115820251: Successfully fit background model for 1,595,929 bp. Use segment r for 0 bp 2025-01-31 10:04:34,184 DEBUG chr5:120455251-125342251: Successfully fit background model for 4,668,286 bp. Use segment r for 0 bp 2025-01-31 10:04:34,189 DEBUG chr2:152309251-157427251: Successfully fit background model for 4,913,619 bp. Use segment r for 0 bp 2025-01-31 10:04:34,220 DEBUG chr4:115820251-119203251: Successfully fit background model for 3,229,920 bp. Use segment r for 0 bp 2025-01-31 10:04:34,296 DEBUG chr3:109872751-115040751: Successfully fit background model for 4,328,158 bp. Use segment r for 0 bp 2025-01-31 10:04:34,605 DEBUG chr3:115040751-118023251: Successfully fit background model for 2,787,877 bp. Use segment r for 0 bp 2025-01-31 10:04:34,622 DEBUG chr5:125342251-129720251: Successfully fit background model for 4,186,954 bp. Use segment r for 0 bp 2025-01-31 10:04:34,672 DEBUG chr5:129720251-130134251: Successfully fit background model for 353,794 bp. Use segment r for 0 bp 2025-01-31 10:04:34,784 DEBUG chr3:118023251-120039001: Successfully fit background model for 1,882,372 bp. Use segment r for 0 bp 2025-01-31 10:04:34,965 DEBUG chr2:157427251-163290251: Successfully fit background model for 5,616,452 bp. Use segment r for 0 bp 2025-01-31 10:04:35,083 DEBUG chr5:130134251-134173251: Successfully fit background model for 3,873,904 bp. Use segment r for 0 bp 2025-01-31 10:04:35,388 DEBUG chr2:163290251-168058751: Successfully fit background model for 4,595,369 bp. Use segment r for 0 bp 2025-01-31 10:04:35,420 DEBUG chr1:108024251-118309751: Successfully fit background model for 8,954,261 bp. Use segment r for 0 bp 2025-01-31 10:04:35,442 DEBUG chr5:134173251-138196251: Successfully fit background model for 3,771,981 bp. Use segment r for 0 bp 2025-01-31 10:04:35,536 DEBUG chr5:138196251-139148251: Successfully fit background model for 873,646 bp. Use segment r for 0 bp 2025-01-31 10:04:35,603 DEBUG chr1:118309751-120091251: Successfully fit background model for 1,732,309 bp. Use segment r for 0 bp 2025-01-31 10:04:35,789 DEBUG chrX:106010251-124233001: Successfully fit background model for 14,666,033 bp. Use segment r for 7,303 bp 2025-01-31 10:04:35,880 DEBUG chr1:120091251-123260251: Successfully fit background model for 2,942,022 bp. Use segment r for 0 bp 2025-01-31 10:04:36,093 DEBUG chr1:123260251-125428251: Successfully fit background model for 1,992,657 bp. Use segment r for 0 bp 2025-01-31 10:04:36,133 DEBUG chr5:139148251-144109751: Successfully fit background model for 4,745,426 bp. Use segment r for 0 bp 2025-01-31 10:04:36,165 DEBUG chr2:168058751-175179001: Successfully fit background model for 6,777,626 bp. Use segment r for 0 bp 2025-01-31 10:04:36,391 DEBUG chr4:119203251-131765751: Successfully fit background model for 11,226,442 bp. Use segment r for 0 bp 2025-01-31 10:04:36,589 DEBUG chr2:176700000-179825251: Successfully fit background model for 1,934,326 bp. Use segment r for 89 bp 2025-01-31 10:04:36,723 DEBUG chr1:125428251-131050751: Successfully fit background model for 5,250,409 bp. Use segment r for 0 bp 2025-01-31 10:04:36,798 DEBUG chr2:179825251-182113224: Successfully fit background model for 2,098,474 bp. Use segment r for 0 bp 2025-01-31 10:04:36,799 DEBUG chr4:131765751-136223751: Successfully fit background model for 4,339,595 bp. Use segment r for 0 bp 2025-01-31 10:04:37,060 DEBUG chr5:144109751-151834684: Successfully fit background model for 7,043,437 bp. Use segment r for 0 bp 2025-01-31 10:04:37,115 DEBUG chrX:126015000-134024751: Successfully fit background model for 6,906,019 bp. Use segment r for 205 bp 2025-01-31 10:04:37,263 DEBUG chr1:131050751-136294751: Successfully fit background model for 5,115,715 bp. Use segment r for 0 bp 2025-01-31 10:04:37,277 DEBUG chrX:134024751-135670501: Successfully fit background model for 1,247,092 bp. Use segment r for 0 bp 2025-01-31 10:04:37,331 DEBUG chr4:136223751-141722251: Successfully fit background model for 5,383,784 bp. Use segment r for 0 bp 2025-01-31 10:04:37,531 DEBUG chr3:120039001-137088751: Successfully fit background model for 15,817,512 bp. Use segment r for 0 bp 2025-01-31 10:04:37,559 DEBUG chr1:136294751-139543501: Successfully fit background model for 3,046,226 bp. Use segment r for 0 bp 2025-01-31 10:04:37,737 DEBUG chr3:137088751-139092751: Successfully fit background model for 1,877,988 bp. Use segment r for 0 bp 2025-01-31 10:04:37,970 DEBUG chr1:139543501-143699751: Successfully fit background model for 3,534,531 bp. Use segment r for 0 bp 2025-01-31 10:04:38,051 DEBUG chr1:143699751-144414251: Successfully fit background model for 619,749 bp. Use segment r for 0 bp 2025-01-31 10:04:38,416 DEBUG chr3:139092751-143838251: Successfully fit background model for 4,421,772 bp. Use segment r for 371 bp 2025-01-31 10:04:38,487 DEBUG chr1:144414251-148640751: Successfully fit background model for 3,684,208 bp. Use segment r for 0 bp 2025-01-31 10:04:38,608 DEBUG chr4:141722251-147847751: Successfully fit background model for 3,895,921 bp. Use segment r for 29 bp 2025-01-31 10:04:38,705 DEBUG chr3:143838251-146992251: Successfully fit background model for 2,967,368 bp. Use segment r for 0 bp 2025-01-31 10:04:38,723 DEBUG chr1:148640751-151027251: Successfully fit background model for 2,189,656 bp. Use segment r for 0 bp 2025-01-31 10:04:39,136 DEBUG chr3:146992251-151741001: Successfully fit background model for 4,481,032 bp. Use segment r for 0 bp 2025-01-31 10:04:39,404 DEBUG chr3:151741001-154710251: Successfully fit background model for 2,818,199 bp. Use segment r for 0 bp 2025-01-31 10:04:39,734 DEBUG chr4:147847751-156508116: Successfully fit background model for 8,241,610 bp. Use segment r for 0 bp 2025-01-31 10:04:39,915 DEBUG chr3:154710251-160039680: Successfully fit background model for 4,707,498 bp. Use segment r for 0 bp 2025-01-31 10:04:41,168 DEBUG chrX:135670501-150434251: Successfully fit background model for 11,135,303 bp. Use segment r for 154 bp 2025-01-31 10:04:41,382 DEBUG chrX:150434251-152143251: Successfully fit background model for 1,520,594 bp. Use segment r for 0 bp 2025-01-31 10:04:41,872 DEBUG chr1:151027251-167207251: Successfully fit background model for 15,211,100 bp. Use segment r for 0 bp 2025-01-31 10:04:41,953 DEBUG chr1:167207251-167394751: Successfully fit background model for 184,084 bp. Use segment r for 0 bp 2025-01-31 10:04:42,534 DEBUG chr1:167394751-170835251: Successfully fit background model for 3,243,610 bp. Use segment r for 0 bp 2025-01-31 10:04:42,604 DEBUG chrX:152143251-159251751: Successfully fit background model for 6,079,125 bp. Use segment r for 0 bp 2025-01-31 10:04:42,610 DEBUG chr1:170835251-171406751: Successfully fit background model for 532,072 bp. Use segment r for 0 bp 2025-01-31 10:04:42,739 DEBUG chr1:171406751-172278251: Successfully fit background model for 806,635 bp. Use segment r for 0 bp 2025-01-31 10:04:43,138 DEBUG chrX:159251751-164360251: Successfully fit background model for 4,700,436 bp. Use segment r for 0 bp 2025-01-31 10:04:43,612 DEBUG chr1:172278251-178301751: Successfully fit background model for 5,437,626 bp. Use segment r for 0 bp 2025-01-31 10:04:43,790 DEBUG chrX:164360251-169969251: Successfully fit background model for 5,111,001 bp. Use segment r for 0 bp 2025-01-31 10:04:43,826 DEBUG chr1:178301751-180696251: Successfully fit background model for 2,308,949 bp. Use segment r for 0 bp 2025-01-31 10:04:43,894 DEBUG chr1:180696251-181282251: Successfully fit background model for 563,694 bp. Use segment r for 0 bp 2025-01-31 10:04:43,894 DEBUG chrX:169969251-171031299: Successfully fit background model for 15,471 bp. Use segment r for 0 bp 2025-01-31 10:04:44,303 DEBUG chr1:181282251-185404751: Successfully fit background model for 3,844,893 bp. Use segment r for 0 bp 2025-01-31 10:04:44,901 DEBUG chr1:185404751-190747251: Successfully fit background model for 5,145,082 bp. Use segment r for 0 bp 2025-01-31 10:04:45,061 DEBUG chr1:190747251-191944251: Successfully fit background model for 1,152,417 bp. Use segment r for 0 bp 2025-01-31 10:04:45,584 DEBUG chr1:191944251-195471971: Successfully fit background model for 3,175,474 bp. Use segment r for 0 bp 2025-01-31 10:06:09,744 DEBUG chr6:3050000-9081751: Successfully fit background model for 5,360,973 bp. Use segment r for 0 bp 2025-01-31 10:06:09,822 DEBUG chr7:3004000-3575751: Successfully fit background model for 425,887 bp. Use segment r for 0 bp 2025-01-31 10:06:10,060 DEBUG chr7:3575751-5128751: Successfully fit background model for 1,249,314 bp. Use segment r for 76 bp 2025-01-31 10:06:10,122 DEBUG chr7:5128751-5777001: Successfully fit background model for 469,646 bp. Use segment r for 0 bp 2025-01-31 10:06:10,608 DEBUG chr7:5777001-9168501: Successfully fit background model for 1,444,123 bp. Use segment r for 3,425 bp 2025-01-31 10:06:10,717 DEBUG chr10:3102000-14868751: Successfully fit background model for 10,707,321 bp. Use segment r for 0 bp 2025-01-31 10:06:10,908 DEBUG chr10:14868751-16781751: Successfully fit background model for 1,662,216 bp. Use segment r for 0 bp 2025-01-31 10:06:10,989 DEBUG chr7:9914000-12816251: Successfully fit background model for 1,913,938 bp. Use segment r for 5,047 bp 2025-01-31 10:06:11,020 DEBUG chr7:12816251-13063751: Successfully fit background model for 238,093 bp. Use segment r for 0 bp 2025-01-31 10:06:11,296 DEBUG chr7:13063751-15878751: Successfully fit background model for 1,730,915 bp. Use segment r for 0 bp 2025-01-31 10:06:11,408 DEBUG chr7:15878751-17101251: Successfully fit background model for 1,185,258 bp. Use segment r for 0 bp 2025-01-31 10:06:11,640 DEBUG chr7:17101251-18884251: Successfully fit background model for 1,244,359 bp. Use segment r for 6,546 bp 2025-01-31 10:06:11,747 DEBUG chr7:18884251-20073001: Successfully fit background model for 1,135,649 bp. Use segment r for 0 bp 2025-01-31 10:06:11,986 DEBUG chr7:22778500-24294251: Successfully fit background model for 832,735 bp. Use segment r for 10,084 bp 2025-01-31 10:06:12,129 DEBUG chr7:24294251-25915751: Successfully fit background model for 1,523,991 bp. Use segment r for 0 bp 2025-01-31 10:06:12,240 DEBUG chr7:25915751-27128251: Successfully fit background model for 946,280 bp. Use segment r for 0 bp 2025-01-31 10:06:12,662 DEBUG chr7:27128251-31018001: Successfully fit background model for 3,657,774 bp. Use segment r for 0 bp 2025-01-31 10:06:12,987 DEBUG chr10:16781751-29697751: Successfully fit background model for 11,862,030 bp. Use segment r for 0 bp 2025-01-31 10:06:13,036 DEBUG chr7:31018001-33837251: Successfully fit background model for 1,220,121 bp. Use segment r for 3,022 bp 2025-01-31 10:06:13,140 DEBUG chr6:9081751-28404751: Successfully fit background model for 17,124,498 bp. Use segment r for 0 bp 2025-01-31 10:06:13,347 DEBUG chr6:28404751-30300251: Successfully fit background model for 1,844,083 bp. Use segment r for 0 bp 2025-01-31 10:06:13,808 DEBUG chr6:30300251-35238251: Successfully fit background model for 4,690,556 bp. Use segment r for 0 bp 2025-01-31 10:06:14,132 DEBUG chr6:35238251-38427251: Successfully fit background model for 2,947,300 bp. Use segment r for 0 bp 2025-01-31 10:06:14,231 DEBUG chr6:38427251-39458751: Successfully fit background model for 1,011,447 bp. Use segment r for 0 bp 2025-01-31 10:06:14,238 DEBUG chr7:33837251-40475501: Successfully fit background model for 5,489,586 bp. Use segment r for 152 bp 2025-01-31 10:06:14,575 DEBUG chr7:40475501-43015751: Successfully fit background model for 2,100,541 bp. Use segment r for 882 bp 2025-01-31 10:06:14,619 DEBUG chr10:29697751-39957751: Successfully fit background model for 9,268,422 bp. Use segment r for 0 bp 2025-01-31 10:06:14,712 DEBUG chr7:43015751-44341251: Successfully fit background model for 1,180,901 bp. Use segment r for 0 bp 2025-01-31 10:06:14,779 DEBUG chr6:39458751-43984751: Successfully fit background model for 4,049,459 bp. Use segment r for 0 bp 2025-01-31 10:06:14,834 DEBUG chr7:44341251-45714251: Successfully fit background model for 1,347,197 bp. Use segment r for 0 bp 2025-01-31 10:06:14,942 DEBUG chr10:39957751-43475251: Successfully fit background model for 3,372,723 bp. Use segment r for 0 bp 2025-01-31 10:06:14,963 DEBUG chr7:45714251-47166751: Successfully fit background model for 1,423,162 bp. Use segment r for 0 bp 2025-01-31 10:06:15,069 DEBUG chr6:43984751-47173251: Successfully fit background model for 2,846,762 bp. Use segment r for 0 bp 2025-01-31 10:06:15,089 DEBUG chr7:47166751-48327751: Successfully fit background model for 926,873 bp. Use segment r for 0 bp 2025-01-31 10:06:15,255 DEBUG chr7:48327751-50028251: Successfully fit background model for 1,596,026 bp. Use segment r for 0 bp 2025-01-31 10:06:15,260 DEBUG chr6:47173251-49233251: Successfully fit background model for 1,802,101 bp. Use segment r for 0 bp 2025-01-31 10:06:15,297 DEBUG chr10:43475251-46821751: Successfully fit background model for 3,110,545 bp. Use segment r for 0 bp 2025-01-31 10:06:15,465 DEBUG chr7:50028251-52181751: Successfully fit background model for 1,872,871 bp. Use segment r for 0 bp 2025-01-31 10:06:15,574 DEBUG chr10:46821751-49930501: Successfully fit background model for 2,727,639 bp. Use segment r for 0 bp 2025-01-31 10:06:15,789 DEBUG chr7:52181751-55427251: Successfully fit background model for 2,863,976 bp. Use segment r for 0 bp 2025-01-31 10:06:15,903 DEBUG chr7:55427251-56636751: Successfully fit background model for 1,054,360 bp. Use segment r for 0 bp 2025-01-31 10:06:16,191 DEBUG chr10:49930501-55520251: Successfully fit background model for 4,974,663 bp. Use segment r for 0 bp 2025-01-31 10:06:16,577 DEBUG chr10:55520251-59799251: Successfully fit background model for 3,581,190 bp. Use segment r for 0 bp 2025-01-31 10:06:16,784 DEBUG chr7:56636751-63885751: Successfully fit background model for 6,013,628 bp. Use segment r for 0 bp 2025-01-31 10:06:16,888 DEBUG chr7:63885751-64874251: Successfully fit background model for 900,793 bp. Use segment r for 0 bp 2025-01-31 10:06:16,985 DEBUG chr10:59799251-64165251: Successfully fit background model for 4,193,826 bp. Use segment r for 0 bp 2025-01-31 10:06:17,108 DEBUG chr6:49233251-59407751: Successfully fit background model for 9,517,991 bp. Use segment r for 0 bp 2025-01-31 10:06:17,153 DEBUG chr10:64165251-65390751: Successfully fit background model for 1,058,983 bp. Use segment r for 80,581 bp 2025-01-31 10:06:17,208 DEBUG chr7:64874251-68414251: Successfully fit background model for 3,399,726 bp. Use segment r for 0 bp 2025-01-31 10:06:17,744 DEBUG chr7:68414251-73517501: Successfully fit background model for 4,774,795 bp. Use segment r for 0 bp 2025-01-31 10:06:17,921 DEBUG chr6:59407751-66960251: Successfully fit background model for 6,697,107 bp. Use segment r for 0 bp 2025-01-31 10:06:18,006 DEBUG chr7:73517501-76450751: Successfully fit background model for 2,693,343 bp. Use segment r for 0 bp 2025-01-31 10:06:18,047 DEBUG chr6:66960251-68216251: Successfully fit background model for 1,095,347 bp. Use segment r for 0 bp 2025-01-31 10:06:18,152 DEBUG chr7:76450751-77944501: Successfully fit background model for 1,374,829 bp. Use segment r for 0 bp 2025-01-31 10:06:18,269 DEBUG chr6:68216251-70709501: Successfully fit background model for 1,935,656 bp. Use segment r for 0 bp 2025-01-31 10:06:18,280 DEBUG chr7:77944501-79234251: Successfully fit background model for 1,239,173 bp. Use segment r for 0 bp 2025-01-31 10:06:18,449 DEBUG chr7:79234251-80986251: Successfully fit background model for 1,707,141 bp. Use segment r for 0 bp 2025-01-31 10:06:18,579 DEBUG chr6:70709501-74238251: Successfully fit background model for 3,326,373 bp. Use segment r for 0 bp 2025-01-31 10:06:18,820 DEBUG chr10:65390751-75549751: Successfully fit background model for 9,401,613 bp. Use segment r for 0 bp 2025-01-31 10:06:18,853 DEBUG chr7:80986251-84934251: Successfully fit background model for 3,717,991 bp. Use segment r for 0 bp 2025-01-31 10:06:19,183 DEBUG chr7:84934251-88560251: Successfully fit background model for 3,219,684 bp. Use segment r for 0 bp 2025-01-31 10:06:19,209 DEBUG chr6:74238251-79541751: Successfully fit background model for 4,772,911 bp. Use segment r for 0 bp 2025-01-31 10:06:19,218 DEBUG chr10:75549751-79637251: Successfully fit background model for 3,794,272 bp. Use segment r for 0 bp 2025-01-31 10:06:19,369 DEBUG chr7:88560251-90600751: Successfully fit background model for 1,856,644 bp. Use segment r for 0 bp 2025-01-31 10:06:19,404 DEBUG chr10:79637251-81656751: Successfully fit background model for 1,984,246 bp. Use segment r for 0 bp 2025-01-31 10:06:19,495 DEBUG chr7:90600751-91813251: Successfully fit background model for 1,136,088 bp. Use segment r for 0 bp 2025-01-31 10:06:19,535 DEBUG chr6:79541751-82997001: Successfully fit background model for 3,144,963 bp. Use segment r for 0 bp 2025-01-31 10:06:19,590 DEBUG chr6:82997001-83505251: Successfully fit background model for 499,526 bp. Use segment r for 0 bp 2025-01-31 10:06:19,621 DEBUG chr7:91813251-93222751: Successfully fit background model for 1,276,200 bp. Use segment r for 0 bp 2025-01-31 10:06:19,811 DEBUG chr6:83505251-85329751: Successfully fit background model for 1,746,870 bp. Use segment r for 0 bp 2025-01-31 10:06:19,881 DEBUG chr7:93222751-95816251: Successfully fit background model for 2,336,285 bp. Use segment r for 0 bp 2025-01-31 10:06:20,088 DEBUG chr7:95816251-98103501: Successfully fit background model for 2,165,310 bp. Use segment r for 0 bp 2025-01-31 10:06:20,501 DEBUG chr8:3070000-4752251: Successfully fit background model for 1,474,399 bp. Use segment r for 0 bp 2025-01-31 10:06:20,579 DEBUG chr7:98103501-103043251: Successfully fit background model for 4,768,862 bp. Use segment r for 0 bp 2025-01-31 10:06:20,598 DEBUG chr6:85329751-92015751: Successfully fit background model for 6,284,466 bp. Use segment r for 0 bp 2025-01-31 10:06:20,738 DEBUG chr14:3006500-5131001: Successfully fit background model for 72,408 bp. Use segment r for 2,363 bp 2025-01-31 10:06:20,764 DEBUG chr7:103043251-105014751: Successfully fit background model for 1,613,656 bp. Use segment r for 0 bp 2025-01-31 10:06:20,780 DEBUG chr8:4752251-7696001: Successfully fit background model for 2,586,584 bp. Use segment r for 0 bp 2025-01-31 10:06:20,879 DEBUG chr7:105014751-106241751: Successfully fit background model for 765,477 bp. Use segment r for 0 bp 2025-01-31 10:06:21,080 DEBUG chr8:7696001-10994751: Successfully fit background model for 3,148,199 bp. Use segment r for 0 bp 2025-01-31 10:06:21,095 DEBUG chr7:106241751-108172751: Successfully fit background model for 1,632,301 bp. Use segment r for 0 bp 2025-01-31 10:06:21,276 DEBUG chr8:10994751-13229251: Successfully fit background model for 2,184,660 bp. Use segment r for 0 bp 2025-01-31 10:06:22,314 DEBUG chr10:81656751-99314751: Successfully fit background model for 16,290,580 bp. Use segment r for 0 bp 2025-01-31 10:06:22,453 DEBUG chr6:92015751-103914751: Successfully fit background model for 11,227,738 bp. Use segment r for 0 bp 2025-01-31 10:06:23,634 DEBUG chr6:103914751-112888751: Successfully fit background model for 8,128,521 bp. Use segment r for 0 bp 2025-01-31 10:06:23,689 DEBUG chr10:99314751-109395251: Successfully fit background model for 9,134,432 bp. Use segment r for 0 bp 2025-01-31 10:06:23,719 DEBUG chr6:112888751-113612251: Successfully fit background model for 708,894 bp. Use segment r for 0 bp 2025-01-31 10:06:24,074 DEBUG chr7:108172751-126241001: Successfully fit background model for 17,193,034 bp. Use segment r for 0 bp 2025-01-31 10:06:24,207 DEBUG chr14:5838000-19685251: Successfully fit background model for 10,932,364 bp. Use segment r for 999 bp 2025-01-31 10:06:24,231 DEBUG chr6:113612251-119269751: Successfully fit background model for 5,243,977 bp. Use segment r for 0 bp 2025-01-31 10:06:24,286 DEBUG chr7:126241001-128231751: Successfully fit background model for 1,915,579 bp. Use segment r for 0 bp 2025-01-31 10:06:24,406 DEBUG chr14:19685251-21680751: Successfully fit background model for 1,929,529 bp. Use segment r for 0 bp 2025-01-31 10:06:24,557 DEBUG chr6:119269751-122835251: Successfully fit background model for 3,305,863 bp. Use segment r for 0 bp 2025-01-31 10:06:24,718 DEBUG chr6:122835251-124359251: Successfully fit background model for 1,063,327 bp. Use segment r for 0 bp 2025-01-31 10:06:24,816 DEBUG chr6:124359251-125416751: Successfully fit background model for 985,869 bp. Use segment r for 0 bp 2025-01-31 10:06:25,300 DEBUG chr8:13229251-29201751: Successfully fit background model for 13,285,839 bp. Use segment r for 43,287 bp 2025-01-31 10:06:25,367 DEBUG chr6:125416751-129729751: Successfully fit background model for 4,088,158 bp. Use segment r for 0 bp 2025-01-31 10:06:25,502 DEBUG chr14:21680751-30541251: Successfully fit background model for 8,062,955 bp. Use segment r for 0 bp 2025-01-31 10:06:25,618 DEBUG chr8:29201751-32578751: Successfully fit background model for 3,066,421 bp. Use segment r for 0 bp 2025-01-31 10:06:25,688 DEBUG chr6:129729751-133318751: Successfully fit background model for 2,884,914 bp. Use segment r for 0 bp 2025-01-31 10:06:25,827 DEBUG chr6:133318751-134600251: Successfully fit background model for 1,128,603 bp. Use segment r for 0 bp 2025-01-31 10:06:25,879 DEBUG chr6:134600251-135132751: Successfully fit background model for 517,558 bp. Use segment r for 0 bp 2025-01-31 10:06:25,924 DEBUG chr14:30541251-35332251: Successfully fit background model for 4,612,866 bp. Use segment r for 0 bp 2025-01-31 10:06:25,947 DEBUG chr10:109395251-124277251: Successfully fit background model for 13,904,153 bp. Use segment r for 0 bp 2025-01-31 10:06:26,064 DEBUG chr8:32578751-37402251: Successfully fit background model for 4,529,310 bp. Use segment r for 0 bp 2025-01-31 10:06:26,099 DEBUG chr14:35332251-37195001: Successfully fit background model for 1,699,439 bp. Use segment r for 0 bp 2025-01-31 10:06:26,207 DEBUG chr10:124277251-126895751: Successfully fit background model for 2,433,929 bp. Use segment r for 0 bp 2025-01-31 10:06:26,232 DEBUG chr6:135132751-138632251: Successfully fit background model for 3,352,166 bp. Use segment r for 0 bp 2025-01-31 10:06:26,426 DEBUG chr7:128231751-140805751: Successfully fit background model for 12,007,744 bp. Use segment r for 0 bp 2025-01-31 10:06:26,472 DEBUG chr14:37195001-40435251: Successfully fit background model for 2,903,961 bp. Use segment r for 0 bp 2025-01-31 10:06:26,478 DEBUG chr10:126895751-129276001: Successfully fit background model for 2,252,798 bp. Use segment r for 0 bp 2025-01-31 10:06:26,534 DEBUG chr7:140805751-141666251: Successfully fit background model for 840,634 bp. Use segment r for 0 bp 2025-01-31 10:06:26,608 DEBUG chr10:129276001-130694993: Successfully fit background model for 1,100,977 bp. Use segment r for 0 bp 2025-01-31 10:06:26,636 DEBUG chr8:37402251-43530251: Successfully fit background model for 5,442,681 bp. Use segment r for 0 bp 2025-01-31 10:06:26,967 DEBUG chr7:141666251-145441459: Successfully fit background model for 3,507,824 bp. Use segment r for 0 bp 2025-01-31 10:06:27,114 DEBUG chr8:43530251-49024001: Successfully fit background model for 5,133,312 bp. Use segment r for 0 bp 2025-01-31 10:06:27,273 DEBUG chr6:138632251-146576751: Successfully fit background model for 7,406,392 bp. Use segment r for 0 bp 2025-01-31 10:06:27,476 DEBUG chr14:40435251-46110251: Successfully fit background model for 2,689,873 bp. Use segment r for 2,094 bp 2025-01-31 10:06:27,482 DEBUG chr8:49024001-53097751: Successfully fit background model for 3,704,557 bp. Use segment r for 0 bp 2025-01-31 10:06:27,561 DEBUG chr6:146576751-149736546: Successfully fit background model for 2,811,752 bp. Use segment r for 0 bp 2025-01-31 10:06:27,784 DEBUG chr14:46110251-49491251: Successfully fit background model for 3,247,988 bp. Use segment r for 0 bp 2025-01-31 10:06:27,917 DEBUG chr14:49491251-50784751: Successfully fit background model for 1,085,612 bp. Use segment r for 0 bp 2025-01-31 10:06:28,068 DEBUG chr14:50784751-52447751: Successfully fit background model for 1,438,100 bp. Use segment r for 0 bp 2025-01-31 10:06:28,242 DEBUG chr14:52447751-54360751: Successfully fit background model for 1,118,974 bp. Use segment r for 0 bp 2025-01-31 10:06:28,250 DEBUG chr8:53097751-60942251: Successfully fit background model for 6,683,467 bp. Use segment r for 0 bp 2025-01-31 10:06:28,275 DEBUG chr8:60942251-60994251: Successfully fit background model for 51,151 bp. Use segment r for 0 bp 2025-01-31 10:06:28,360 DEBUG chr14:54360751-55642251: Successfully fit background model for 1,227,626 bp. Use segment r for 0 bp 2025-01-31 10:06:29,696 DEBUG chr8:60994251-69749251: Successfully fit background model for 7,809,819 bp. Use segment r for 0 bp 2025-01-31 10:06:29,818 DEBUG chr8:69749251-70938751: Successfully fit background model for 1,165,272 bp. Use segment r for 0 bp 2025-01-31 10:06:29,984 DEBUG chr8:70938751-72538751: Successfully fit background model for 1,352,181 bp. Use segment r for 0 bp 2025-01-31 10:06:31,686 DEBUG chr8:72538751-83566751: Successfully fit background model for 10,006,476 bp. Use segment r for 0 bp 2025-01-31 10:06:31,821 DEBUG chr8:83566751-84891251: Successfully fit background model for 1,300,918 bp. Use segment r for 0 bp 2025-01-31 10:06:32,362 DEBUG chr14:55642251-79875751: Successfully fit background model for 22,511,511 bp. Use segment r for 0 bp 2025-01-31 10:06:33,041 DEBUG chr14:79875751-86169251: Successfully fit background model for 5,632,174 bp. Use segment r for 0 bp 2025-01-31 10:06:33,185 DEBUG chr8:84891251-94009251: Successfully fit background model for 8,712,467 bp. Use segment r for 0 bp 2025-01-31 10:06:33,186 DEBUG chr14:86169251-87650251: Successfully fit background model for 1,383,863 bp. Use segment r for 0 bp 2025-01-31 10:06:33,418 DEBUG chr8:94009251-96614751: Successfully fit background model for 2,466,485 bp. Use segment r for 0 bp 2025-01-31 10:06:34,171 DEBUG chr8:96614751-103006501: Successfully fit background model for 5,844,744 bp. Use segment r for 0 bp 2025-01-31 10:06:34,311 DEBUG chr8:103006501-104533251: Successfully fit background model for 1,456,712 bp. Use segment r for 0 bp 2025-01-31 10:06:34,603 DEBUG chr8:104533251-107282251: Successfully fit background model for 2,570,359 bp. Use segment r for 0 bp 2025-01-31 10:06:34,783 DEBUG chr14:87650251-98547751: Successfully fit background model for 9,896,263 bp. Use segment r for 0 bp 2025-01-31 10:06:34,932 DEBUG chr8:107282251-110845751: Successfully fit background model for 3,466,694 bp. Use segment r for 0 bp 2025-01-31 10:06:35,016 DEBUG chr8:110845751-111731251: Successfully fit background model for 859,174 bp. Use segment r for 0 bp 2025-01-31 10:06:35,135 DEBUG chr14:98547751-102552251: Successfully fit background model for 3,746,245 bp. Use segment r for 0 bp 2025-01-31 10:06:35,444 DEBUG chr14:102552251-105988751: Successfully fit background model for 3,140,471 bp. Use segment r for 0 bp 2025-01-31 10:06:35,843 DEBUG chr8:111731251-116866751: Successfully fit background model for 4,657,383 bp. Use segment r for 291,238 bp 2025-01-31 10:06:36,065 DEBUG chr8:116866751-119343251: Successfully fit background model for 2,404,070 bp. Use segment r for 0 bp 2025-01-31 10:06:36,615 DEBUG chr8:119343251-123804751: Successfully fit background model for 4,262,473 bp. Use segment r for 0 bp 2025-01-31 10:06:37,312 DEBUG chr8:123804751-129401213: Successfully fit background model for 5,209,994 bp. Use segment r for 0 bp 2025-01-31 10:06:37,486 DEBUG chr14:105988751-118086251: Successfully fit background model for 10,928,543 bp. Use segment r for 0 bp 2025-01-31 10:06:37,781 DEBUG chr14:118086251-121256251: Successfully fit background model for 2,982,483 bp. Use segment r for 0 bp 2025-01-31 10:06:37,862 DEBUG chr14:121256251-121951251: Successfully fit background model for 682,520 bp. Use segment r for 0 bp 2025-01-31 10:06:38,196 DEBUG chr14:121951251-124902244: Successfully fit background model for 2,476,260 bp. Use segment r for 0 bp 2025-01-31 10:06:44,052 DEBUG chr9:3002500-7707251: Successfully fit background model for 4,081,000 bp. Use segment r for 0 bp 2025-01-31 10:06:44,080 DEBUG chr9:7707251-7864751: Successfully fit background model for 142,888 bp. Use segment r for 0 bp 2025-01-31 10:06:44,708 DEBUG chr9:7864751-13293751: Successfully fit background model for 4,785,496 bp. Use segment r for 0 bp 2025-01-31 10:06:44,871 DEBUG chr9:13293751-15016251: Successfully fit background model for 1,553,868 bp. Use segment r for 0 bp 2025-01-31 10:06:45,512 DEBUG chr9:15016251-20633251: Successfully fit background model for 4,983,358 bp. Use segment r for 0 bp 2025-01-31 10:06:45,670 DEBUG chr9:20633251-22305251: Successfully fit background model for 1,610,671 bp. Use segment r for 0 bp 2025-01-31 10:06:46,400 DEBUG chr9:22305251-25633501: Successfully fit background model for 3,063,502 bp. Use segment r for 0 bp 2025-01-31 10:06:47,140 DEBUG chr9:25633501-31118751: Successfully fit background model for 5,203,054 bp. Use segment r for 0 bp 2025-01-31 10:06:47,304 DEBUG chr9:31118751-32875251: Successfully fit background model for 1,692,680 bp. Use segment r for 0 bp 2025-01-31 10:06:47,489 DEBUG chr9:32875251-34995751: Successfully fit background model for 1,989,718 bp. Use segment r for 0 bp 2025-01-31 10:06:47,841 DEBUG chr9:34995751-37956251: Successfully fit background model for 2,662,337 bp. Use segment r for 0 bp 2025-01-31 10:06:48,086 DEBUG chr9:37956251-40755751: Successfully fit background model for 2,519,999 bp. Use segment r for 0 bp 2025-01-31 10:06:48,101 DEBUG chr9:40755751-40822251: Successfully fit background model for 62,729 bp. Use segment r for 0 bp 2025-01-31 10:06:48,332 DEBUG chr9:40822251-43099251: Successfully fit background model for 2,231,454 bp. Use segment r for 0 bp 2025-01-31 10:06:48,422 DEBUG chr9:43099251-44067001: Successfully fit background model for 955,685 bp. Use segment r for 0 bp 2025-01-31 10:06:48,462 DEBUG chr9:44067001-44485251: Successfully fit background model for 394,902 bp. Use segment r for 0 bp 2025-01-31 10:06:48,622 DEBUG chr9:44485251-45905251: Successfully fit background model for 1,402,392 bp. Use segment r for 0 bp 2025-01-31 10:06:50,391 DEBUG chr9:45905251-56858751: Successfully fit background model for 10,425,740 bp. Use segment r for 0 bp 2025-01-31 10:06:50,559 DEBUG chr9:56858751-58578751: Successfully fit background model for 1,680,730 bp. Use segment r for 0 bp 2025-01-31 10:06:51,154 DEBUG chr9:58578751-63644751: Successfully fit background model for 4,916,592 bp. Use segment r for 0 bp 2025-01-31 10:06:51,430 DEBUG chr9:63644751-66832251: Successfully fit background model for 3,107,871 bp. Use segment r for 0 bp 2025-01-31 10:06:51,818 DEBUG chr9:66832251-70656251: Successfully fit background model for 3,702,827 bp. Use segment r for 0 bp 2025-01-31 10:06:51,994 DEBUG chr9:70656251-72630751: Successfully fit background model for 1,877,837 bp. Use segment r for 0 bp 2025-01-31 10:06:52,706 DEBUG chr9:72630751-78804251: Successfully fit background model for 5,740,780 bp. Use segment r for 0 bp 2025-01-31 10:06:55,010 DEBUG chr9:78804251-90578251: Successfully fit background model for 10,291,195 bp. Use segment r for 0 bp 2025-01-31 10:06:55,333 DEBUG chr9:90578251-94038751: Successfully fit background model for 3,075,536 bp. Use segment r for 0 bp 2025-01-31 10:06:58,652 DEBUG chr9:94038751-106152751: Successfully fit background model for 11,557,869 bp. Use segment r for 0 bp 2025-01-31 10:06:59,631 DEBUG chr9:106152751-110615751: Successfully fit background model for 4,110,210 bp. Use segment r for 0 bp 2025-01-31 10:07:00,923 DEBUG chr9:110615751-119320251: Successfully fit background model for 8,227,813 bp. Use segment r for 0 bp 2025-01-31 10:07:01,401 DEBUG chr9:119320251-124595110: Successfully fit background model for 4,732,153 bp. Use segment r for 0 bp 2025-01-31 10:07:41,543 DEBUG chr11:3100500-3203251: Successfully fit background model for 75,714 bp. Use segment r for 0 bp 2025-01-31 10:07:41,937 DEBUG chr11:3203251-6676751: Successfully fit background model for 3,339,033 bp. Use segment r for 0 bp 2025-01-31 10:07:42,172 DEBUG chr11:6676751-9254001: Successfully fit background model for 2,332,835 bp. Use segment r for 0 bp 2025-01-31 10:07:42,382 DEBUG chr11:9254001-11133751: Successfully fit background model for 1,661,916 bp. Use segment r for 0 bp 2025-01-31 10:07:42,509 DEBUG chr11:11133751-12524751: Successfully fit background model for 1,272,761 bp. Use segment r for 0 bp 2025-01-31 10:07:42,852 DEBUG chr11:12524751-16026751: Successfully fit background model for 3,083,166 bp. Use segment r for 0 bp 2025-01-31 10:07:43,161 DEBUG chr11:16026751-19291251: Successfully fit background model for 2,972,326 bp. Use segment r for 0 bp 2025-01-31 10:07:43,705 DEBUG chr11:19291251-24338751: Successfully fit background model for 4,765,115 bp. Use segment r for 0 bp 2025-01-31 10:07:44,106 DEBUG chr11:24338751-28891751: Successfully fit background model for 4,091,571 bp. Use segment r for 0 bp 2025-01-31 10:07:44,610 DEBUG chr11:28891751-34313251: Successfully fit background model for 5,080,553 bp. Use segment r for 0 bp 2025-01-31 10:07:44,899 DEBUG chr11:34313251-37563251: Successfully fit background model for 3,035,432 bp. Use segment r for 0 bp 2025-01-31 10:07:45,390 DEBUG chr11:37563251-41987751: Successfully fit background model for 4,028,404 bp. Use segment r for 0 bp 2025-01-31 10:07:46,280 DEBUG chr11:41987751-48770751: Successfully fit background model for 6,318,578 bp. Use segment r for 0 bp 2025-01-31 10:07:46,308 DEBUG chr11:48770751-48875751: Successfully fit background model for 102,029 bp. Use segment r for 0 bp 2025-01-31 10:07:47,251 DEBUG chr13:3002000-4707001: Successfully fit background model for 1,449,607 bp. Use segment r for 0 bp 2025-01-31 10:07:47,748 DEBUG chr13:4707001-8777751: Successfully fit background model for 3,605,954 bp. Use segment r for 0 bp 2025-01-31 10:07:48,011 DEBUG chr12:3001500-5411251: Successfully fit background model for 2,216,497 bp. Use segment r for 0 bp 2025-01-31 10:07:48,124 DEBUG chr11:48875751-58902751: Successfully fit background model for 9,414,377 bp. Use segment r for 0 bp 2025-01-31 10:07:48,235 DEBUG chr13:8777751-13952751: Successfully fit background model for 4,362,974 bp. Use segment r for 0 bp 2025-01-31 10:07:48,595 DEBUG chr11:58902751-63515251: Successfully fit background model for 4,399,261 bp. Use segment r for 0 bp 2025-01-31 10:07:48,921 DEBUG chr13:13952751-21159001: Successfully fit background model for 6,506,039 bp. Use segment r for 0 bp 2025-01-31 10:07:49,020 DEBUG chr13:21159001-22053251: Successfully fit background model for 801,115 bp. Use segment r for 0 bp 2025-01-31 10:07:49,088 DEBUG chr11:63515251-68965751: Successfully fit background model for 5,259,929 bp. Use segment r for 0 bp 2025-01-31 10:07:49,194 DEBUG chr13:22053251-23256751: Successfully fit background model for 904,079 bp. Use segment r for 0 bp 2025-01-31 10:07:49,210 DEBUG chr11:68965751-70029751: Successfully fit background model for 1,045,525 bp. Use segment r for 0 bp 2025-01-31 10:07:49,245 DEBUG chr13:23256751-23765751: Successfully fit background model for 466,847 bp. Use segment r for 0 bp 2025-01-31 10:07:49,308 DEBUG chr11:70029751-71106251: Successfully fit background model for 1,023,436 bp. Use segment r for 0 bp 2025-01-31 10:07:49,373 DEBUG chr13:23765751-25166251: Successfully fit background model for 1,326,254 bp. Use segment r for 0 bp 2025-01-31 10:07:49,626 DEBUG chr13:25166251-27607751: Successfully fit background model for 2,200,487 bp. Use segment r for 0 bp 2025-01-31 10:07:49,640 DEBUG chr11:71106251-74828251: Successfully fit background model for 3,417,449 bp. Use segment r for 0 bp 2025-01-31 10:07:49,724 DEBUG chr11:74828251-75653251: Successfully fit background model for 795,443 bp. Use segment r for 0 bp 2025-01-31 10:07:49,935 DEBUG chr12:5411251-16794251: Successfully fit background model for 10,390,260 bp. Use segment r for 0 bp 2025-01-31 10:07:50,110 DEBUG chr12:16794251-18546251: Successfully fit background model for 1,409,976 bp. Use segment r for 0 bp 2025-01-31 10:07:50,138 DEBUG chr11:75653251-79608751: Successfully fit background model for 3,851,636 bp. Use segment r for 0 bp 2025-01-31 10:07:50,612 DEBUG chr11:79608751-84563751: Successfully fit background model for 4,736,190 bp. Use segment r for 0 bp 2025-01-31 10:07:51,043 DEBUG chr15:3050500-5086251: Successfully fit background model for 1,732,531 bp. Use segment r for 0 bp 2025-01-31 10:07:51,055 DEBUG chr11:84563751-89462501: Successfully fit background model for 4,748,877 bp. Use segment r for 0 bp 2025-01-31 10:07:51,179 DEBUG chr11:89462501-90730751: Successfully fit background model for 1,211,163 bp. Use segment r for 0 bp 2025-01-31 10:07:51,199 DEBUG chr12:18546251-24558751: Successfully fit background model for 1,897,412 bp. Use segment r for 2,743 bp 2025-01-31 10:07:51,242 DEBUG chr12:24558751-24871251: Successfully fit background model for 297,981 bp. Use segment r for 0 bp 2025-01-31 10:07:51,459 DEBUG chr11:90730751-93268251: Successfully fit background model for 2,332,838 bp. Use segment r for 0 bp 2025-01-31 10:07:51,542 DEBUG chr11:93268251-94127501: Successfully fit background model for 815,501 bp. Use segment r for 0 bp 2025-01-31 10:07:51,839 DEBUG chr11:94127501-96787751: Successfully fit background model for 2,597,274 bp. Use segment r for 0 bp 2025-01-31 10:07:52,058 DEBUG chr12:24871251-31948251: Successfully fit background model for 6,733,024 bp. Use segment r for 0 bp 2025-01-31 10:07:52,105 DEBUG chr11:96787751-99540251: Successfully fit background model for 2,693,337 bp. Use segment r for 0 bp 2025-01-31 10:07:52,186 DEBUG chr12:31948251-33217751: Successfully fit background model for 1,187,487 bp. Use segment r for 0 bp 2025-01-31 10:07:52,188 DEBUG chr11:99540251-100251751: Successfully fit background model for 648,222 bp. Use segment r for 0 bp 2025-01-31 10:07:52,213 DEBUG chr16:3101000-5439251: Successfully fit background model for 1,911,833 bp. Use segment r for 0 bp 2025-01-31 10:07:52,247 DEBUG chr15:5086251-13457251: Successfully fit background model for 7,711,094 bp. Use segment r for 0 bp 2025-01-31 10:07:52,483 DEBUG chr11:100251751-103113251: Successfully fit background model for 2,792,359 bp. Use segment r for 0 bp 2025-01-31 10:07:52,525 DEBUG chr16:5439251-8572251: Successfully fit background model for 2,969,235 bp. Use segment r for 0 bp 2025-01-31 10:07:52,667 DEBUG chr11:103113251-105120251: Successfully fit background model for 1,934,447 bp. Use segment r for 0 bp 2025-01-31 10:07:53,218 DEBUG chr16:8572251-14484751: Successfully fit background model for 5,602,418 bp. Use segment r for 0 bp 2025-01-31 10:07:53,467 DEBUG chr16:14484751-17124251: Successfully fit background model for 2,313,148 bp. Use segment r for 0 bp 2025-01-31 10:07:53,627 DEBUG chr13:27607751-48797251: Successfully fit background model for 19,865,633 bp. Use segment r for 0 bp 2025-01-31 10:07:53,643 DEBUG chr16:17124251-19031751: Successfully fit background model for 1,835,734 bp. Use segment r for 0 bp 2025-01-31 10:07:53,701 DEBUG chr11:105120251-108485251: Successfully fit background model for 3,235,692 bp. Use segment r for 0 bp 2025-01-31 10:07:53,712 DEBUG chr16:19031751-19629251: Successfully fit background model for 467,700 bp. Use segment r for 0 bp 2025-01-31 10:07:53,727 DEBUG chr13:48797251-49339751: Successfully fit background model for 534,042 bp. Use segment r for 0 bp 2025-01-31 10:07:53,896 DEBUG chr11:108485251-110613751: Successfully fit background model for 2,044,312 bp. Use segment r for 0 bp 2025-01-31 10:07:54,065 DEBUG chr11:110613751-112474251: Successfully fit background model for 1,773,379 bp. Use segment r for 0 bp 2025-01-31 10:07:54,174 DEBUG chr16:19629251-23486751: Successfully fit background model for 3,600,084 bp. Use segment r for 0 bp 2025-01-31 10:07:54,345 DEBUG chr13:49339751-54443751: Successfully fit background model for 4,498,707 bp. Use segment r for 0 bp 2025-01-31 10:07:54,362 DEBUG chr11:112474251-115151251: Successfully fit background model for 2,584,220 bp. Use segment r for 0 bp 2025-01-31 10:07:54,457 DEBUG chr13:54443751-55540251: Successfully fit background model for 1,057,014 bp. Use segment r for 0 bp 2025-01-31 10:07:54,501 DEBUG chr15:13457251-27409251: Successfully fit background model for 12,525,171 bp. Use segment r for 0 bp 2025-01-31 10:07:54,545 DEBUG chr15:27409251-27531251: Successfully fit background model for 118,403 bp. Use segment r for 0 bp 2025-01-31 10:07:54,607 DEBUG chr11:115151251-117825251: Successfully fit background model for 2,593,613 bp. Use segment r for 0 bp 2025-01-31 10:07:54,763 DEBUG chr13:55540251-58106251: Successfully fit background model for 2,507,333 bp. Use segment r for 0 bp 2025-01-31 10:07:54,812 DEBUG chr16:23486751-29210251: Successfully fit background model for 5,367,754 bp. Use segment r for 0 bp 2025-01-31 10:07:54,829 DEBUG chr11:117825251-120250751: Successfully fit background model for 2,385,908 bp. Use segment r for 0 bp 2025-01-31 10:07:54,907 DEBUG chr11:120250751-120885751: Successfully fit background model for 606,083 bp. Use segment r for 0 bp 2025-01-31 10:07:55,008 DEBUG chr13:58106251-60775501: Successfully fit background model for 2,571,986 bp. Use segment r for 0 bp 2025-01-31 10:07:55,019 DEBUG chr11:120885751-122082543: Successfully fit background model for 1,030,101 bp. Use segment r for 0 bp 2025-01-31 10:07:55,327 DEBUG chr13:60775501-63094251: Successfully fit background model for 1,736,223 bp. Use segment r for 43,476 bp 2025-01-31 10:07:55,388 DEBUG chr15:27531251-34365251: Successfully fit background model for 6,191,644 bp. Use segment r for 0 bp 2025-01-31 10:07:55,461 DEBUG chr13:63094251-64577251: Successfully fit background model for 1,417,729 bp. Use segment r for 0 bp 2025-01-31 10:07:55,555 DEBUG chr15:34365251-36127251: Successfully fit background model for 1,598,481 bp. Use segment r for 0 bp 2025-01-31 10:07:55,642 DEBUG chr15:36127251-36913251: Successfully fit background model for 751,107 bp. Use segment r for 0 bp 2025-01-31 10:07:55,762 DEBUG chr15:36913251-38265751: Successfully fit background model for 1,283,850 bp. Use segment r for 0 bp 2025-01-31 10:07:55,817 DEBUG chr15:38265751-38527251: Successfully fit background model for 250,384 bp. Use segment r for 0 bp 2025-01-31 10:07:56,332 DEBUG chr16:29210251-39064751: Successfully fit background model for 9,416,651 bp. Use segment r for 0 bp 2025-01-31 10:07:56,574 DEBUG chr15:38527251-45093251: Successfully fit background model for 5,893,992 bp. Use segment r for 0 bp 2025-01-31 10:07:56,658 DEBUG chr16:39064751-42446751: Successfully fit background model for 3,171,668 bp. Use segment r for 0 bp 2025-01-31 10:07:56,945 DEBUG chr16:42446751-45169751: Successfully fit background model for 2,527,396 bp. Use segment r for 0 bp 2025-01-31 10:07:57,118 DEBUG chr12:33217751-51475751: Successfully fit background model for 16,412,290 bp. Use segment r for 115,170 bp 2025-01-31 10:07:57,124 DEBUG chr15:45093251-50857501: Successfully fit background model for 5,164,110 bp. Use segment r for 0 bp 2025-01-31 10:07:57,344 DEBUG chr16:45169751-49250251: Successfully fit background model for 3,633,552 bp. Use segment r for 0 bp 2025-01-31 10:07:57,502 DEBUG chr16:49250251-50889751: Successfully fit background model for 1,552,382 bp. Use segment r for 0 bp 2025-01-31 10:07:57,508 DEBUG chr12:51475751-55431751: Successfully fit background model for 3,548,457 bp. Use segment r for 0 bp 2025-01-31 10:07:57,819 DEBUG chr15:50857501-57688751: Successfully fit background model for 6,250,436 bp. Use segment r for 0 bp 2025-01-31 10:07:57,889 DEBUG chr13:64577251-73238001: Successfully fit background model for 6,586,971 bp. Use segment r for 4,522 bp 2025-01-31 10:07:57,953 DEBUG chr15:57688751-59058251: Successfully fit background model for 1,333,833 bp. Use segment r for 0 bp 2025-01-31 10:07:57,954 DEBUG chr12:55431751-59888751: Successfully fit background model for 4,055,496 bp. Use segment r for 0 bp 2025-01-31 10:07:57,970 DEBUG chr13:73238001-73936751: Successfully fit background model for 685,841 bp. Use segment r for 0 bp 2025-01-31 10:07:58,070 DEBUG chr16:50889751-55819251: Successfully fit background model for 4,393,293 bp. Use segment r for 0 bp 2025-01-31 10:07:58,435 DEBUG chr16:55819251-59765751: Successfully fit background model for 3,516,394 bp. Use segment r for 0 bp 2025-01-31 10:07:58,636 DEBUG chr13:73936751-78162251: Successfully fit background model for 3,730,086 bp. Use segment r for 34,260 bp 2025-01-31 10:07:58,654 DEBUG chr13:78162251-78213751: Successfully fit background model for 51,397 bp. Use segment r for 0 bp 2025-01-31 10:07:58,677 DEBUG chr16:59765751-62213751: Successfully fit background model for 2,157,586 bp. Use segment r for 0 bp 2025-01-31 10:07:58,799 DEBUG chr15:59058251-66667751: Successfully fit background model for 6,934,060 bp. Use segment r for 0 bp 2025-01-31 10:07:58,862 DEBUG chr15:66667751-67181751: Successfully fit background model for 495,287 bp. Use segment r for 0 bp 2025-01-31 10:07:58,937 DEBUG chr13:78213751-80881251: Successfully fit background model for 2,395,277 bp. Use segment r for 0 bp 2025-01-31 10:07:58,952 DEBUG chr13:80881251-80941251: Successfully fit background model for 59,686 bp. Use segment r for 0 bp 2025-01-31 10:07:59,032 DEBUG chr13:80941251-81625501: Successfully fit background model for 642,698 bp. Use segment r for 0 bp 2025-01-31 10:07:59,051 DEBUG chr13:81625501-81784251: Successfully fit background model for 148,907 bp. Use segment r for 0 bp 2025-01-31 10:07:59,113 DEBUG chr12:59888751-69119751: Successfully fit background model for 8,227,236 bp. Use segment r for 0 bp 2025-01-31 10:07:59,244 DEBUG chr13:81784251-83686251: Successfully fit background model for 1,749,612 bp. Use segment r for 0 bp 2025-01-31 10:07:59,256 DEBUG chr13:83686251-83740251: Successfully fit background model for 46,790 bp. Use segment r for 0 bp 2025-01-31 10:07:59,447 DEBUG chr15:67181751-72850501: Successfully fit background model for 5,213,728 bp. Use segment r for 0 bp 2025-01-31 10:07:59,711 DEBUG chr15:72850501-75838251: Successfully fit background model for 2,809,943 bp. Use segment r for 0 bp 2025-01-31 10:07:59,740 DEBUG chr13:83740251-88591251: Successfully fit background model for 4,244,793 bp. Use segment r for 0 bp 2025-01-31 10:07:59,807 DEBUG chr15:75838251-76764751: Successfully fit background model for 900,145 bp. Use segment r for 0 bp 2025-01-31 10:08:00,594 DEBUG chr15:76764751-83583251: Successfully fit background model for 6,455,457 bp. Use segment r for 0 bp 2025-01-31 10:08:00,781 DEBUG chr15:83583251-85650251: Successfully fit background model for 2,011,503 bp. Use segment r for 0 bp 2025-01-31 10:08:00,873 DEBUG chr13:88591251-96925251: Successfully fit background model for 7,828,757 bp. Use segment r for 0 bp 2025-01-31 10:08:01,084 DEBUG chr15:85650251-88704751: Successfully fit background model for 2,972,644 bp. Use segment r for 0 bp 2025-01-31 10:08:01,184 DEBUG chr15:88704751-89796751: Successfully fit background model for 1,029,896 bp. Use segment r for 0 bp 2025-01-31 10:08:01,240 DEBUG chr12:69119751-83061751: Successfully fit background model for 13,188,417 bp. Use segment r for 0 bp 2025-01-31 10:08:01,294 DEBUG chr13:96925251-101688751: Successfully fit background model for 4,467,416 bp. Use segment r for 0 bp 2025-01-31 10:08:01,628 DEBUG chr12:83061751-87265751: Successfully fit background model for 4,097,751 bp. Use segment r for 0 bp 2025-01-31 10:08:01,921 DEBUG chr15:89796751-96256751: Successfully fit background model for 6,094,343 bp. Use segment r for 0 bp 2025-01-31 10:08:02,129 DEBUG chr15:96256751-98504251: Successfully fit background model for 2,138,565 bp. Use segment r for 0 bp 2025-01-31 10:08:02,172 DEBUG chr12:87265751-92401751: Successfully fit background model for 4,367,129 bp. Use segment r for 0 bp 2025-01-31 10:08:02,560 DEBUG chr15:98504251-103379251: Successfully fit background model for 4,721,351 bp. Use segment r for 0 bp 2025-01-31 10:08:02,629 DEBUG chr15:103379251-104043685: Successfully fit background model for 417,811 bp. Use segment r for 0 bp 2025-01-31 10:08:02,689 DEBUG chr12:92401751-97502251: Successfully fit background model for 4,597,547 bp. Use segment r for 0 bp 2025-01-31 10:08:02,848 DEBUG chr12:97502251-99210251: Successfully fit background model for 1,579,087 bp. Use segment r for 0 bp 2025-01-31 10:08:02,933 DEBUG chr13:101688751-111683001: Successfully fit background model for 9,283,226 bp. Use segment r for 0 bp 2025-01-31 10:08:03,047 DEBUG chr13:111683001-112743751: Successfully fit background model for 1,024,442 bp. Use segment r for 0 bp 2025-01-31 10:08:03,331 DEBUG chr13:112743751-115278251: Successfully fit background model for 2,401,856 bp. Use segment r for 0 bp 2025-01-31 10:08:03,453 DEBUG chr12:99210251-104931251: Successfully fit background model for 5,356,934 bp. Use segment r for 0 bp 2025-01-31 10:08:03,479 DEBUG chr12:104931251-105070251: Successfully fit background model for 136,259 bp. Use segment r for 0 bp 2025-01-31 10:08:03,509 DEBUG chr16:62213751-90023251: Successfully fit background model for 25,331,854 bp. Use segment r for 0 bp 2025-01-31 10:08:03,587 DEBUG chr12:105070251-105974251: Successfully fit background model for 865,019 bp. Use segment r for 0 bp 2025-01-31 10:08:03,733 DEBUG chr13:115278251-119428001: Successfully fit background model for 3,794,222 bp. Use segment r for 0 bp 2025-01-31 10:08:03,831 DEBUG chr13:119428001-120421639: Successfully fit background model for 401,760 bp. Use segment r for 0 bp 2025-01-31 10:08:03,974 DEBUG chr16:90023251-94486251: Successfully fit background model for 4,327,312 bp. Use segment r for 0 bp 2025-01-31 10:08:04,031 DEBUG chr12:105974251-110415251: Successfully fit background model for 4,299,411 bp. Use segment r for 0 bp 2025-01-31 10:08:04,280 DEBUG chr12:110415251-113226251: Successfully fit background model for 2,730,993 bp. Use segment r for 0 bp 2025-01-31 10:08:04,326 DEBUG chr16:94486251-98207768: Successfully fit background model for 3,464,481 bp. Use segment r for 0 bp 2025-01-31 10:08:04,539 DEBUG chr12:113226251-116255251: Successfully fit background model for 2,497,599 bp. Use segment r for 0 bp 2025-01-31 10:08:04,937 DEBUG chr12:116255251-120129022: Successfully fit background model for 3,477,362 bp. Use segment r for 0 bp 2025-01-31 10:08:15,638 DEBUG chr17:3000000-16006751: Successfully fit background model for 10,973,908 bp. Use segment r for 0 bp 2025-01-31 10:08:16,480 DEBUG chr17:16006751-23530001: Successfully fit background model for 6,188,042 bp. Use segment r for 0 bp 2025-01-31 10:08:16,997 DEBUG chr17:23530001-29317751: Successfully fit background model for 5,600,982 bp. Use segment r for 0 bp 2025-01-31 10:08:17,393 DEBUG chr17:29317751-33779251: Successfully fit background model for 4,182,417 bp. Use segment r for 0 bp 2025-01-31 10:08:17,618 DEBUG chr17:33779251-36317751: Successfully fit background model for 2,297,170 bp. Use segment r for 0 bp 2025-01-31 10:08:18,846 DEBUG chr17:36317751-44282751: Successfully fit background model for 6,965,972 bp. Use segment r for 0 bp 2025-01-31 10:08:18,969 DEBUG chr17:44282751-45551751: Successfully fit background model for 1,221,635 bp. Use segment r for 0 bp 2025-01-31 10:08:19,244 DEBUG chr17:45551751-48599251: Successfully fit background model for 2,948,938 bp. Use segment r for 0 bp 2025-01-31 10:08:20,478 DEBUG chr17:48599251-55944251: Successfully fit background model for 6,707,059 bp. Use segment r for 0 bp 2025-01-31 10:08:20,611 DEBUG chr17:55944251-57355251: Successfully fit background model for 1,381,901 bp. Use segment r for 0 bp 2025-01-31 10:08:21,257 DEBUG chr17:57355251-62750751: Successfully fit background model for 4,867,029 bp. Use segment r for 0 bp 2025-01-31 10:08:21,594 DEBUG chr17:62750751-66588751: Successfully fit background model for 3,571,601 bp. Use segment r for 0 bp 2025-01-31 10:08:21,928 DEBUG chr17:66588751-70467251: Successfully fit background model for 3,606,231 bp. Use segment r for 0 bp 2025-01-31 10:08:22,068 DEBUG chr17:70467251-71917751: Successfully fit background model for 1,403,106 bp. Use segment r for 0 bp 2025-01-31 10:08:22,416 DEBUG chr17:71917751-75077251: Successfully fit background model for 2,990,281 bp. Use segment r for 0 bp 2025-01-31 10:08:22,693 DEBUG chr17:75077251-77791251: Successfully fit background model for 2,507,772 bp. Use segment r for 0 bp 2025-01-31 10:08:23,072 DEBUG chr17:77791251-81223501: Successfully fit background model for 3,277,084 bp. Use segment r for 0 bp 2025-01-31 10:08:23,246 DEBUG chr17:81223501-82844751: Successfully fit background model for 1,453,954 bp. Use segment r for 0 bp 2025-01-31 10:08:24,029 DEBUG chr17:82844751-88918751: Successfully fit background model for 5,858,904 bp. Use segment r for 0 bp 2025-01-31 10:08:24,921 DEBUG chr17:88918751-94987271: Successfully fit background model for 5,399,910 bp. Use segment r for 0 bp 2025-01-31 10:09:01,954 DEBUG chr18:3000500-17604751: Successfully fit background model for 13,241,018 bp. Use segment r for 0 bp 2025-01-31 10:09:02,158 DEBUG chr18:17604751-19532751: Successfully fit background model for 1,719,477 bp. Use segment r for 0 bp 2025-01-31 10:09:02,299 DEBUG chr19:3080000-7618751: Successfully fit background model for 4,234,514 bp. Use segment r for 0 bp 2025-01-31 10:09:02,375 DEBUG chr19:7618751-8331501: Successfully fit background model for 526,397 bp. Use segment r for 0 bp 2025-01-31 10:09:02,475 DEBUG chr19:8331501-9139751: Successfully fit background model for 738,435 bp. Use segment r for 0 bp 2025-01-31 10:09:02,545 DEBUG chr19:9139751-9870751: Successfully fit background model for 406,821 bp. Use segment r for 0 bp 2025-01-31 10:09:02,653 DEBUG chr19:9870751-10986751: Successfully fit background model for 1,097,582 bp. Use segment r for 0 bp 2025-01-31 10:09:02,720 DEBUG chr19:10986751-11700751: Successfully fit background model for 631,145 bp. Use segment r for 0 bp 2025-01-31 10:09:02,752 DEBUG chr19:11700751-12018251: Successfully fit background model for 303,718 bp. Use segment r for 0 bp 2025-01-31 10:09:03,139 DEBUG chr19:12018251-15642251: Successfully fit background model for 3,291,676 bp. Use segment r for 0 bp 2025-01-31 10:09:03,150 DEBUG chr18:19532751-27571251: Successfully fit background model for 7,439,446 bp. Use segment r for 0 bp 2025-01-31 10:09:03,305 DEBUG chr19:15642251-17448251: Successfully fit background model for 1,727,196 bp. Use segment r for 0 bp 2025-01-31 10:09:03,517 DEBUG chr18:27571251-31609251: Successfully fit background model for 3,723,254 bp. Use segment r for 0 bp 2025-01-31 10:09:03,766 DEBUG chr18:31609251-34219751: Successfully fit background model for 2,411,835 bp. Use segment r for 0 bp 2025-01-31 10:09:03,997 DEBUG chr18:34219751-36818251: Successfully fit background model for 2,538,108 bp. Use segment r for 0 bp 2025-01-31 10:09:04,020 DEBUG chr19:17448251-23120251: Successfully fit background model for 5,286,236 bp. Use segment r for 0 bp 2025-01-31 10:09:04,051 DEBUG chr19:23120251-23281751: Successfully fit background model for 158,001 bp. Use segment r for 0 bp 2025-01-31 10:09:04,222 DEBUG chr19:23281751-24906251: Successfully fit background model for 1,575,849 bp. Use segment r for 0 bp 2025-01-31 10:09:04,277 DEBUG chr18:36818251-39475751: Successfully fit background model for 2,500,588 bp. Use segment r for 0 bp 2025-01-31 10:09:04,586 DEBUG chr19:24906251-28419251: Successfully fit background model for 3,336,934 bp. Use segment r for 0 bp 2025-01-31 10:09:04,749 DEBUG chr19:28419251-30198751: Successfully fit background model for 1,727,666 bp. Use segment r for 0 bp 2025-01-31 10:09:04,897 DEBUG chr19:30198751-31866751: Successfully fit background model for 1,576,719 bp. Use segment r for 0 bp 2025-01-31 10:09:04,998 DEBUG chr19:31866751-32761251: Successfully fit background model for 844,113 bp. Use segment r for 0 bp 2025-01-31 10:09:05,298 DEBUG chr19:32761251-35600751: Successfully fit background model for 2,533,548 bp. Use segment r for 0 bp 2025-01-31 10:09:05,626 DEBUG chr19:35600751-39066251: Successfully fit background model for 3,313,413 bp. Use segment r for 0 bp 2025-01-31 10:09:05,664 DEBUG chr18:39475751-48248251: Successfully fit background model for 8,082,409 bp. Use segment r for 0 bp 2025-01-31 10:09:05,716 DEBUG chr19:39066251-39992501: Successfully fit background model for 673,702 bp. Use segment r for 0 bp 2025-01-31 10:09:06,252 DEBUG chr19:39992501-44245751: Successfully fit background model for 4,065,713 bp. Use segment r for 0 bp 2025-01-31 10:09:06,590 DEBUG chr19:44245751-47978751: Successfully fit background model for 3,619,355 bp. Use segment r for 0 bp 2025-01-31 10:09:06,697 DEBUG chr18:48248251-56551751: Successfully fit background model for 7,655,786 bp. Use segment r for 0 bp 2025-01-31 10:09:06,749 DEBUG chr19:47978751-49314251: Successfully fit background model for 1,271,182 bp. Use segment r for 0 bp 2025-01-31 10:09:07,054 DEBUG chr19:49314251-52335251: Successfully fit background model for 2,778,169 bp. Use segment r for 0 bp 2025-01-31 10:09:07,128 DEBUG chr18:56551751-60459751: Successfully fit background model for 3,639,884 bp. Use segment r for 0 bp 2025-01-31 10:09:07,241 DEBUG chr18:60459751-61673751: Successfully fit background model for 1,189,238 bp. Use segment r for 0 bp 2025-01-31 10:09:07,788 DEBUG chr18:61673751-67191751: Successfully fit background model for 5,271,219 bp. Use segment r for 0 bp 2025-01-31 10:09:07,842 DEBUG chr18:67191751-67648751: Successfully fit background model for 448,993 bp. Use segment r for 0 bp 2025-01-31 10:09:08,221 DEBUG chr18:67648751-71298751: Successfully fit background model for 3,404,077 bp. Use segment r for 0 bp 2025-01-31 10:09:08,422 DEBUG chr18:71298751-73571251: Successfully fit background model for 2,106,819 bp. Use segment r for 0 bp 2025-01-31 10:09:08,649 DEBUG chr19:52335251-61431566: Successfully fit background model for 8,628,653 bp. Use segment r for 0 bp 2025-01-31 10:09:08,863 DEBUG chr18:73571251-78129751: Successfully fit background model for 4,285,504 bp. Use segment r for 0 bp 2025-01-31 10:09:09,783 DEBUG chr18:78129751-85988751: Successfully fit background model for 7,330,671 bp. Use segment r for 0 bp 2025-01-31 10:09:10,203 DEBUG chr18:85988751-90702639: Successfully fit background model for 3,991,859 bp. Use segment r for 0 bp 2025-01-31 10:10:15,505 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:10:15,507 INFO Calculating per-bp p-values 2025-01-31 10:10:15,508 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:10:15,552 DEBUG chr1: Calculating p-values 2025-01-31 10:10:15,554 DEBUG chr4: Calculating p-values 2025-01-31 10:10:15,554 DEBUG chr2: Calculating p-values 2025-01-31 10:10:15,555 DEBUG chr5: Calculating p-values 2025-01-31 10:10:15,555 DEBUG chrX: Calculating p-values 2025-01-31 10:10:15,556 DEBUG chr3: Calculating p-values 2025-01-31 10:10:43,995 DEBUG Saving p-values for chrX 2025-01-31 10:10:49,325 DEBUG Saving p-values for chr3 2025-01-31 10:10:50,984 DEBUG Saving p-values for chr5 2025-01-31 10:10:51,122 DEBUG Saving p-values for chr4 2025-01-31 10:10:56,875 DEBUG Saving p-values for chr2 2025-01-31 10:11:03,561 DEBUG Saving p-values for chr1 2025-01-31 10:11:11,752 DEBUG chr6: Calculating p-values 2025-01-31 10:11:18,073 DEBUG chr7: Calculating p-values 2025-01-31 10:11:18,202 DEBUG chr10: Calculating p-values 2025-01-31 10:11:20,453 DEBUG chr8: Calculating p-values 2025-01-31 10:11:31,050 DEBUG chr14: Calculating p-values 2025-01-31 10:11:42,062 DEBUG chr9: Calculating p-values 2025-01-31 10:11:43,648 DEBUG Saving p-values for chr6 2025-01-31 10:11:47,229 DEBUG Saving p-values for chr10 2025-01-31 10:11:49,924 DEBUG Saving p-values for chr8 2025-01-31 10:11:53,861 DEBUG Saving p-values for chr14 2025-01-31 10:11:53,872 DEBUG Saving p-values for chr7 2025-01-31 10:12:09,047 DEBUG chr11: Calculating p-values 2025-01-31 10:12:10,791 DEBUG chr13: Calculating p-values 2025-01-31 10:12:11,756 DEBUG Saving p-values for chr9 2025-01-31 10:12:11,966 DEBUG chr12: Calculating p-values 2025-01-31 10:12:14,200 DEBUG chr15: Calculating p-values 2025-01-31 10:12:20,619 DEBUG chr16: Calculating p-values 2025-01-31 10:12:36,436 DEBUG Saving p-values for chr12 2025-01-31 10:12:36,947 DEBUG chr17: Calculating p-values 2025-01-31 10:12:38,768 DEBUG Saving p-values for chr13 2025-01-31 10:12:40,636 DEBUG Saving p-values for chr16 2025-01-31 10:12:43,342 DEBUG Saving p-values for chr11 2025-01-31 10:12:44,125 DEBUG Saving p-values for chr15 2025-01-31 10:12:57,315 DEBUG chrY: Calculating p-values 2025-01-31 10:12:58,590 DEBUG chr18: Calculating p-values 2025-01-31 10:13:00,048 DEBUG Saving p-values for chr17 2025-01-31 10:13:00,687 DEBUG chr19: Calculating p-values 2025-01-31 10:13:14,669 DEBUG Saving p-values for chr19 2025-01-31 10:13:14,732 DEBUG Saving p-values for chr18 2025-01-31 10:13:43,369 DEBUG Results of calc_pvals emitted. 2025-01-31 10:13:43,370 INFO Converting threshold values to bigwig 2025-01-31 10:13:43,370 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:13:59,832 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:14:33,354 INFO Converting background quantile values to bigwig 2025-01-31 10:14:33,355 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:15:07,566 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:15:36,907 INFO Calculating per-bp FDRs 2025-01-31 10:15:36,909 DEBUG AG81962: Extracting raw P-values 2025-01-31 10:16:18,219 DEBUG AG81962: Computing FDR 2025-01-31 10:16:42,933 DEBUG AG81962: Saving FDRs to parquet 2025-01-31 10:18:00,141 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:18:00,146 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:18:00,146 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:18:04,042 DEBUG chr5: Calling hotspots 2025-01-31 10:18:04,190 DEBUG chr3: Calling hotspots 2025-01-31 10:18:04,261 DEBUG chr4: Calling hotspots 2025-01-31 10:18:04,448 DEBUG chrX: Calling hotspots 2025-01-31 10:18:04,586 DEBUG chr2: Calling hotspots 2025-01-31 10:18:04,984 DEBUG chr1: Calling hotspots 2025-01-31 10:18:10,770 DEBUG chr3: 4331 hotspots called 2025-01-31 10:18:10,828 DEBUG chr5: 5766 hotspots called 2025-01-31 10:18:11,301 DEBUG chr4: 5885 hotspots called 2025-01-31 10:18:11,383 DEBUG chrX: 2395 hotspots called 2025-01-31 10:18:12,480 DEBUG chr2: 7149 hotspots called 2025-01-31 10:18:13,487 DEBUG chr7: Calling hotspots 2025-01-31 10:18:13,539 DEBUG chr6: Calling hotspots 2025-01-31 10:18:13,638 DEBUG chr10: Calling hotspots 2025-01-31 10:18:13,827 DEBUG chr1: 6354 hotspots called 2025-01-31 10:18:13,862 DEBUG chr8: Calling hotspots 2025-01-31 10:18:14,666 DEBUG chr14: Calling hotspots 2025-01-31 10:18:15,691 DEBUG chr9: Calling hotspots 2025-01-31 10:18:19,318 DEBUG chr10: 4352 hotspots called 2025-01-31 10:18:19,334 DEBUG chr8: 4480 hotspots called 2025-01-31 10:18:19,850 DEBUG chr7: 5708 hotspots called 2025-01-31 10:18:20,521 DEBUG chr14: 2808 hotspots called 2025-01-31 10:18:20,904 DEBUG chr6: 4434 hotspots called 2025-01-31 10:18:21,579 DEBUG chr11: Calling hotspots 2025-01-31 10:18:21,648 DEBUG chr13: Calling hotspots 2025-01-31 10:18:21,820 DEBUG chr9: 4872 hotspots called 2025-01-31 10:18:22,001 DEBUG chr12: Calling hotspots 2025-01-31 10:18:22,452 DEBUG chr15: Calling hotspots 2025-01-31 10:18:22,589 DEBUG chr16: Calling hotspots 2025-01-31 10:18:23,367 DEBUG chr17: Calling hotspots 2025-01-31 10:18:26,912 DEBUG chr13: 4250 hotspots called 2025-01-31 10:18:27,200 DEBUG chr12: 3358 hotspots called 2025-01-31 10:18:27,224 DEBUG chr16: 2908 hotspots called 2025-01-31 10:18:27,301 DEBUG chr15: 4190 hotspots called 2025-01-31 10:18:27,339 DEBUG chr11: 6748 hotspots called 2025-01-31 10:18:27,682 DEBUG chr17: 3940 hotspots called 2025-01-31 10:18:28,070 DEBUG chr18: Calling hotspots 2025-01-31 10:18:28,110 DEBUG chr19: Calling hotspots 2025-01-31 10:18:30,716 DEBUG chr19: 2892 hotspots called 2025-01-31 10:18:31,837 DEBUG chr18: 2321 hotspots called 2025-01-31 10:18:32,164 DEBUG Results of call_hotspots emitted. 2025-01-31 10:18:32,204 INFO There are 89141 hotspots called at FDR=0.05 2025-01-31 10:18:36,585 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:18:36,585 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:18:45,196 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:18:45,405 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:18:45,583 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:18:45,591 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:18:46,070 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:18:46,654 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:18:54,092 DEBUG chr4: 6759 peaks called 2025-01-31 10:18:54,185 DEBUG chr3: 4988 peaks called 2025-01-31 10:18:54,383 DEBUG chrX: 2700 peaks called 2025-01-31 10:18:54,512 DEBUG chr5: 6638 peaks called 2025-01-31 10:18:56,555 DEBUG chr2: 8244 peaks called 2025-01-31 10:18:59,632 DEBUG chr1: 7175 peaks called 2025-01-31 10:19:01,152 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:19:01,235 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:19:01,395 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:19:01,820 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:19:02,768 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:19:05,211 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:19:08,478 DEBUG chr10: 5040 peaks called 2025-01-31 10:19:08,501 DEBUG chr8: 5284 peaks called 2025-01-31 10:19:10,275 DEBUG chr14: 3174 peaks called 2025-01-31 10:19:10,391 DEBUG chr6: 5037 peaks called 2025-01-31 10:19:11,869 DEBUG chr7: 6741 peaks called 2025-01-31 10:19:13,601 DEBUG chr9: 5633 peaks called 2025-01-31 10:19:14,967 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:19:15,070 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:19:15,383 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:19:15,620 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:19:16,669 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:19:17,413 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:19:21,535 DEBUG chr15: 4833 peaks called 2025-01-31 10:19:21,765 DEBUG chr11: 8037 peaks called 2025-01-31 10:19:22,293 DEBUG chr16: 3356 peaks called 2025-01-31 10:19:22,736 DEBUG chr12: 3810 peaks called 2025-01-31 10:19:22,927 DEBUG chr13: 4960 peaks called 2025-01-31 10:19:23,983 DEBUG chr17: 4658 peaks called 2025-01-31 10:19:24,550 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:19:24,682 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:19:27,970 DEBUG chr19: 3441 peaks called 2025-01-31 10:19:30,155 DEBUG chr18: 2653 peaks called 2025-01-31 10:19:30,964 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:19:31,015 INFO There are 103161 peaks called at FDR=0.05 2025-01-31 10:19:32,706 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:19:32,707 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:19:36,127 DEBUG chr3: Calling hotspots 2025-01-31 10:19:36,128 DEBUG chr4: Calling hotspots 2025-01-31 10:19:36,136 DEBUG chr5: Calling hotspots 2025-01-31 10:19:36,245 DEBUG chrX: Calling hotspots 2025-01-31 10:19:36,509 DEBUG chr2: Calling hotspots 2025-01-31 10:19:36,895 DEBUG chr1: Calling hotspots 2025-01-31 10:19:42,416 DEBUG chr5: 4701 hotspots called 2025-01-31 10:19:43,204 DEBUG chr4: 4807 hotspots called 2025-01-31 10:19:43,228 DEBUG chrX: 1840 hotspots called 2025-01-31 10:19:43,318 DEBUG chr3: 3463 hotspots called 2025-01-31 10:19:44,305 DEBUG chr2: 5875 hotspots called 2025-01-31 10:19:45,243 DEBUG chr6: Calling hotspots 2025-01-31 10:19:45,247 DEBUG chr1: 5014 hotspots called 2025-01-31 10:19:45,819 DEBUG chr8: Calling hotspots 2025-01-31 10:19:45,884 DEBUG chr10: Calling hotspots 2025-01-31 10:19:46,088 DEBUG chr7: Calling hotspots 2025-01-31 10:19:46,482 DEBUG chr14: Calling hotspots 2025-01-31 10:19:47,317 DEBUG chr9: Calling hotspots 2025-01-31 10:19:51,610 DEBUG chr10: 3537 hotspots called 2025-01-31 10:19:51,654 DEBUG chr6: 3525 hotspots called 2025-01-31 10:19:51,719 DEBUG chr8: 3667 hotspots called 2025-01-31 10:19:51,874 DEBUG chr14: 2189 hotspots called 2025-01-31 10:19:52,852 DEBUG chr7: 4753 hotspots called 2025-01-31 10:19:53,131 DEBUG chr9: 3992 hotspots called 2025-01-31 10:19:53,806 DEBUG chr11: Calling hotspots 2025-01-31 10:19:53,886 DEBUG chr13: Calling hotspots 2025-01-31 10:19:53,939 DEBUG chr15: Calling hotspots 2025-01-31 10:19:54,021 DEBUG chr12: Calling hotspots 2025-01-31 10:19:54,532 DEBUG chr16: Calling hotspots 2025-01-31 10:19:54,664 DEBUG chr17: Calling hotspots 2025-01-31 10:19:58,467 DEBUG chr15: 3344 hotspots called 2025-01-31 10:19:58,631 DEBUG chr16: 2321 hotspots called 2025-01-31 10:19:58,972 DEBUG chr13: 3415 hotspots called 2025-01-31 10:19:59,058 DEBUG chr11: 5705 hotspots called 2025-01-31 10:19:59,070 DEBUG chr17: 3240 hotspots called 2025-01-31 10:19:59,603 DEBUG chr12: 2673 hotspots called 2025-01-31 10:19:59,638 DEBUG chr19: Calling hotspots 2025-01-31 10:19:59,826 DEBUG chr18: Calling hotspots 2025-01-31 10:20:02,227 DEBUG chr19: 2427 hotspots called 2025-01-31 10:20:03,866 DEBUG chr18: 1849 hotspots called 2025-01-31 10:20:04,208 DEBUG Results of call_hotspots emitted. 2025-01-31 10:20:04,249 INFO There are 72337 hotspots called at FDR=0.01 2025-01-31 10:20:07,500 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:20:07,501 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:20:15,862 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:20:16,039 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:20:16,179 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:20:16,244 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:20:17,336 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:20:18,019 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:20:24,415 DEBUG chr5: 5431 peaks called 2025-01-31 10:20:24,789 DEBUG chr4: 5527 peaks called 2025-01-31 10:20:25,978 DEBUG chr3: 4007 peaks called 2025-01-31 10:20:26,566 DEBUG chrX: 2120 peaks called 2025-01-31 10:20:28,297 DEBUG chr2: 6794 peaks called 2025-01-31 10:20:29,626 DEBUG chr1: 5745 peaks called 2025-01-31 10:20:32,127 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:20:32,447 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:20:32,820 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:20:32,904 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:20:34,099 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:20:35,921 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:20:40,055 DEBUG chr10: 4104 peaks called 2025-01-31 10:20:40,514 DEBUG chr7: 5617 peaks called 2025-01-31 10:20:40,942 DEBUG chr8: 4339 peaks called 2025-01-31 10:20:41,467 DEBUG chr6: 4063 peaks called 2025-01-31 10:20:41,484 DEBUG chr14: 2520 peaks called 2025-01-31 10:20:44,074 DEBUG chr9: 4618 peaks called 2025-01-31 10:20:46,262 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:20:46,496 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:20:46,656 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:20:46,993 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:20:47,002 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:20:48,171 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:20:52,525 DEBUG chr16: 2724 peaks called 2025-01-31 10:20:53,162 DEBUG chr15: 3900 peaks called 2025-01-31 10:20:53,492 DEBUG chr11: 6764 peaks called 2025-01-31 10:20:53,857 DEBUG chr12: 3032 peaks called 2025-01-31 10:20:53,877 DEBUG chr17: 3827 peaks called 2025-01-31 10:20:54,507 DEBUG chr13: 4026 peaks called 2025-01-31 10:20:55,518 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:20:56,108 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:20:58,896 DEBUG chr19: 2866 peaks called 2025-01-31 10:21:01,402 DEBUG chr18: 2138 peaks called 2025-01-31 10:21:02,126 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:21:02,162 INFO There are 84162 peaks called at FDR=0.01 2025-01-31 10:21:03,535 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:21:03,535 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:21:06,839 DEBUG chr5: Calling hotspots 2025-01-31 10:21:06,884 DEBUG chr4: Calling hotspots 2025-01-31 10:21:06,896 DEBUG chr3: Calling hotspots 2025-01-31 10:21:07,251 DEBUG chrX: Calling hotspots 2025-01-31 10:21:07,477 DEBUG chr2: Calling hotspots 2025-01-31 10:21:07,589 DEBUG chr1: Calling hotspots 2025-01-31 10:21:13,052 DEBUG chr5: 3927 hotspots called 2025-01-31 10:21:13,390 DEBUG chr3: 2869 hotspots called 2025-01-31 10:21:13,998 DEBUG chr4: 3985 hotspots called 2025-01-31 10:21:14,854 DEBUG chrX: 1550 hotspots called 2025-01-31 10:21:15,235 DEBUG chr2: 4855 hotspots called 2025-01-31 10:21:15,874 DEBUG chr1: 4097 hotspots called 2025-01-31 10:21:16,127 DEBUG chr6: Calling hotspots 2025-01-31 10:21:16,212 DEBUG chr7: Calling hotspots 2025-01-31 10:21:16,581 DEBUG chr10: Calling hotspots 2025-01-31 10:21:17,265 DEBUG chr8: Calling hotspots 2025-01-31 10:21:17,464 DEBUG chr14: Calling hotspots 2025-01-31 10:21:17,747 DEBUG chr9: Calling hotspots 2025-01-31 10:21:22,311 DEBUG chr10: 2935 hotspots called 2025-01-31 10:21:22,658 DEBUG chr14: 1824 hotspots called 2025-01-31 10:21:22,710 DEBUG chr8: 3121 hotspots called 2025-01-31 10:21:22,928 DEBUG chr6: 2913 hotspots called 2025-01-31 10:21:23,193 DEBUG chr9: 3345 hotspots called 2025-01-31 10:21:23,211 DEBUG chr7: 4008 hotspots called 2025-01-31 10:21:24,505 DEBUG chr11: Calling hotspots 2025-01-31 10:21:24,934 DEBUG chr13: Calling hotspots 2025-01-31 10:21:24,945 DEBUG chr15: Calling hotspots 2025-01-31 10:21:25,030 DEBUG chr12: Calling hotspots 2025-01-31 10:21:25,130 DEBUG chr16: Calling hotspots 2025-01-31 10:21:25,137 DEBUG chr17: Calling hotspots 2025-01-31 10:21:29,271 DEBUG chr17: 2758 hotspots called 2025-01-31 10:21:29,743 DEBUG chr11: 4848 hotspots called 2025-01-31 10:21:29,748 DEBUG chr15: 2769 hotspots called 2025-01-31 10:21:29,838 DEBUG chr16: 1951 hotspots called 2025-01-31 10:21:30,069 DEBUG chr13: 2836 hotspots called 2025-01-31 10:21:30,082 DEBUG chr12: 2197 hotspots called 2025-01-31 10:21:30,628 DEBUG chr19: Calling hotspots 2025-01-31 10:21:30,687 DEBUG chr18: Calling hotspots 2025-01-31 10:21:33,329 DEBUG chr19: 2025 hotspots called 2025-01-31 10:21:34,401 DEBUG chr18: 1535 hotspots called 2025-01-31 10:21:34,704 DEBUG Results of call_hotspots emitted. 2025-01-31 10:21:34,739 INFO There are 60348 hotspots called at FDR=0.001 2025-01-31 10:21:37,456 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:21:37,456 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:21:45,310 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:21:46,292 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:21:46,374 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:21:46,412 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:21:46,964 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:21:47,859 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:21:53,531 DEBUG chr5: 4468 peaks called 2025-01-31 10:21:54,860 DEBUG chr4: 4546 peaks called 2025-01-31 10:21:55,287 DEBUG chr3: 3313 peaks called 2025-01-31 10:21:56,163 DEBUG chrX: 1778 peaks called 2025-01-31 10:21:58,442 DEBUG chr2: 5583 peaks called 2025-01-31 10:22:00,559 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:22:00,903 DEBUG chr1: 4694 peaks called 2025-01-31 10:22:01,621 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:22:02,218 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:22:02,695 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:22:04,495 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:22:06,879 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:22:08,719 DEBUG chr6: 3329 peaks called 2025-01-31 10:22:08,733 DEBUG chr10: 3403 peaks called 2025-01-31 10:22:11,210 DEBUG chr7: 4685 peaks called 2025-01-31 10:22:12,106 DEBUG chr14: 2088 peaks called 2025-01-31 10:22:12,133 DEBUG chr8: 3643 peaks called 2025-01-31 10:22:14,168 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:22:15,349 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:22:15,633 DEBUG chr9: 3854 peaks called 2025-01-31 10:22:16,613 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:22:17,428 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:22:17,494 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:22:19,743 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:22:22,168 DEBUG chr13: 3321 peaks called 2025-01-31 10:22:22,693 DEBUG chr11: 5658 peaks called 2025-01-31 10:22:23,302 DEBUG chr16: 2241 peaks called 2025-01-31 10:22:23,513 DEBUG chr12: 2494 peaks called 2025-01-31 10:22:24,566 DEBUG chr15: 3249 peaks called 2025-01-31 10:22:25,432 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:22:25,686 DEBUG chr17: 3214 peaks called 2025-01-31 10:22:25,967 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:22:28,895 DEBUG chr19: 2373 peaks called 2025-01-31 10:22:31,104 DEBUG chr18: 1771 peaks called 2025-01-31 10:22:31,704 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:22:31,742 INFO There are 69705 peaks called at FDR=0.001 2025-01-31 10:22:32,898 INFO Saving density 2025-01-31 10:22:32,898 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:22:51,615 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:22:56,575 DEBUG Converting density to bigwig 2025-01-31 10:23:48,420 INFO Program finished