2025-01-31 09:31:53,922 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:53,925 INFO Extracting cutcounts from bam file 2025-01-31 09:34:18,785 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:34:18,824 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:34:18,826 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:34:18,827 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:34:18,828 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:34:18,828 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:34:18,833 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:34:22,595 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:34:23,714 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:34:23,892 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:34:23,897 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:34:24,342 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:34:24,434 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:34:24,482 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:34:25,186 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:34:25,320 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:34:25,338 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:34:25,484 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:34:25,820 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:34:26,116 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:34:26,209 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:34:26,322 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:34:27,079 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:34:27,079 INFO Total cutcounts = 22503482 2025-01-31 09:34:27,084 INFO Smoothing signal using MODWT 2025-01-31 09:34:27,086 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:34:27,122 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:27,126 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:27,127 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:27,127 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:27,128 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:27,128 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:45,952 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:52,537 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:52,657 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:53,160 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:30,082 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:48,401 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:42,586 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:44,150 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:50,589 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:56,544 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:08,844 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:40,568 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:22,418 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:25,428 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:29,275 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:42:42,472 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:42:42,472 INFO Estimating parameters of background model 2025-01-31 09:42:42,472 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:42:47,343 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:42:47,633 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:42:47,739 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:42:48,148 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:42:48,563 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:42:48,824 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:43:04,447 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:43:04,449 DEBUG chr5: Signal quantile: 0.990. signal threshold: 13. Best RMSEA: 0.016 2025-01-31 09:43:04,709 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:43:04,712 DEBUG chrX: Signal quantile: 0.995. signal threshold: 9. Best RMSEA: 0.028 2025-01-31 09:43:04,759 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:43:04,761 DEBUG chr3: Signal quantile: 0.992. signal threshold: 13. Best RMSEA: 0.017 2025-01-31 09:43:04,977 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:43:04,979 DEBUG chr4: Signal quantile: 0.990. signal threshold: 13. Best RMSEA: 0.016 2025-01-31 09:43:07,022 DEBUG chr5 total SNP count: 258058 2025-01-31 09:43:07,022 DEBUG chr5 length: 151834684 2025-01-31 09:43:07,022 DEBUG ----------------------------------------- 2025-01-31 09:43:07,022 INFO Processing SNPs in chr5 2025-01-31 09:43:07,272 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 258058)] 2025-01-31 09:43:07,444 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:07,591 DEBUG chr3 total SNP count: 270931 2025-01-31 09:43:07,592 DEBUG chr3 length: 160039680 2025-01-31 09:43:07,592 DEBUG ----------------------------------------- 2025-01-31 09:43:07,592 INFO Processing SNPs in chr3 2025-01-31 09:43:07,685 DEBUG chrX total SNP count: 246220 2025-01-31 09:43:07,685 DEBUG chrX length: 171031299 2025-01-31 09:43:07,685 DEBUG ----------------------------------------- 2025-01-31 09:43:07,685 INFO Processing SNPs in chrX 2025-01-31 09:43:07,688 DEBUG chr4 total SNP count: 261227 2025-01-31 09:43:07,688 DEBUG chr4 length: 156508116 2025-01-31 09:43:07,688 DEBUG ----------------------------------------- 2025-01-31 09:43:07,688 INFO Processing SNPs in chr4 2025-01-31 09:43:07,850 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 270931)] 2025-01-31 09:43:08,028 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:08,058 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 32924), (32924, 32926), (32926, 32982), (32982, 175741), (175741, 246220)] 2025-01-31 09:43:08,079 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 66031), (66031, 261227)] 2025-01-31 09:43:08,167 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:08,203 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:08,349 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:43:08,350 DEBUG chr2: Signal quantile: 0.990. signal threshold: 13. Best RMSEA: 0.016 2025-01-31 09:43:09,744 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:43:09,746 DEBUG chr1: Signal quantile: 0.992. signal threshold: 14. Best RMSEA: 0.016 2025-01-31 09:43:11,310 DEBUG chr2 total SNP count: 315531 2025-01-31 09:43:11,310 DEBUG chr2 length: 182113224 2025-01-31 09:43:11,310 DEBUG ----------------------------------------- 2025-01-31 09:43:11,310 INFO Processing SNPs in chr2 2025-01-31 09:43:11,786 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 307674), (307674, 315531)] 2025-01-31 09:43:11,994 DEBUG Segmenting atomic regions: 2025-01-31 09:43:11,997 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:12,096 DEBUG Processing 1/108 atomic regions from SNP 0 to 603 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:12,750 DEBUG Processing 2/108 atomic regions from SNP 303 to 906 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:12,946 DEBUG chr1 total SNP count: 340873 2025-01-31 09:43:12,946 DEBUG chr1 length: 195471971 2025-01-31 09:43:12,946 DEBUG ----------------------------------------- 2025-01-31 09:43:12,946 INFO Processing SNPs in chr1 2025-01-31 09:43:12,959 DEBUG Processing 3/108 atomic regions from SNP 606 to 1209 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:13,158 DEBUG Processing 4/108 atomic regions from SNP 909 to 1512 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:13,276 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 340873)] 2025-01-31 09:43:13,357 DEBUG Processing 5/108 atomic regions from SNP 1212 to 1815 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:13,501 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:13,559 DEBUG Processing 6/108 atomic regions from SNP 1515 to 2118 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:13,767 DEBUG Processing 7/108 atomic regions from SNP 1818 to 2421 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:13,976 DEBUG Processing 8/108 atomic regions from SNP 2121 to 2723 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:14,176 DEBUG Processing 9/108 atomic regions from SNP 2423 to 3025 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:14,378 DEBUG Processing 10/108 atomic regions from SNP 2725 to 3327 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:14,579 DEBUG Processing 11/108 atomic regions from SNP 3027 to 3629 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:14,792 DEBUG Processing 12/108 atomic regions from SNP 3329 to 3931 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:15,008 DEBUG Processing 13/108 atomic regions from SNP 3631 to 4233 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:15,236 DEBUG Processing 14/108 atomic regions from SNP 3933 to 4535 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:15,473 DEBUG Processing 15/108 atomic regions from SNP 4235 to 4837 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:15,711 DEBUG Processing 16/108 atomic regions from SNP 4537 to 5139 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:15,921 DEBUG Segmenting atomic regions: 2025-01-31 09:43:15,949 DEBUG Processing 17/108 atomic regions from SNP 4839 to 5441 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:16,030 DEBUG Processing 1/219 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,185 DEBUG Processing 18/108 atomic regions from SNP 5141 to 5743 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:16,396 DEBUG Processing 19/108 atomic regions from SNP 5443 to 6045 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:16,598 DEBUG Processing 20/108 atomic regions from SNP 5745 to 6347 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:16,700 DEBUG Processing 2/219 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,807 DEBUG Processing 21/108 atomic regions from SNP 6047 to 6649 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:16,909 DEBUG Processing 3/219 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,020 DEBUG Processing 22/108 atomic regions from SNP 6349 to 6951 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:17,121 DEBUG Processing 4/219 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,240 DEBUG Processing 23/108 atomic regions from SNP 6651 to 7253 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:17,335 DEBUG Processing 5/219 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,444 DEBUG Processing 24/108 atomic regions from SNP 6953 to 7555 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:17,541 DEBUG Processing 6/219 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,648 DEBUG Processing 25/108 atomic regions from SNP 7255 to 7857 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:17,747 DEBUG Processing 7/219 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,852 DEBUG Processing 26/108 atomic regions from SNP 7557 to 8159 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:17,956 DEBUG Processing 8/219 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,054 DEBUG Processing 27/108 atomic regions from SNP 7859 to 8461 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:18,165 DEBUG Processing 9/219 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,255 DEBUG Processing 28/108 atomic regions from SNP 8161 to 8763 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:18,376 DEBUG Processing 10/219 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,458 DEBUG Processing 29/108 atomic regions from SNP 8463 to 9065 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:18,586 DEBUG Processing 11/219 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,662 DEBUG Processing 30/108 atomic regions from SNP 8765 to 9367 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:18,796 DEBUG Processing 12/219 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,884 DEBUG Processing 31/108 atomic regions from SNP 9067 to 9669 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:19,011 DEBUG Processing 13/219 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,088 DEBUG Processing 32/108 atomic regions from SNP 9369 to 9971 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:19,222 DEBUG Processing 14/219 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,288 DEBUG Processing 33/108 atomic regions from SNP 9671 to 10273 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:19,434 DEBUG Processing 15/219 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,493 DEBUG Processing 34/108 atomic regions from SNP 9973 to 10575 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:19,646 DEBUG Processing 16/219 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,699 DEBUG Processing 35/108 atomic regions from SNP 10275 to 10877 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:19,860 DEBUG Processing 17/219 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,903 DEBUG Processing 36/108 atomic regions from SNP 10577 to 11179 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:20,078 DEBUG Processing 18/219 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,115 DEBUG Processing 37/108 atomic regions from SNP 10879 to 11481 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:20,310 DEBUG Processing 19/219 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,343 DEBUG Processing 38/108 atomic regions from SNP 11181 to 11783 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:20,524 DEBUG Processing 20/219 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,583 DEBUG Processing 39/108 atomic regions from SNP 11483 to 12085 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:20,737 DEBUG Processing 21/219 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,814 DEBUG Processing 40/108 atomic regions from SNP 11785 to 12387 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:20,948 DEBUG Processing 22/219 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,031 DEBUG Processing 41/108 atomic regions from SNP 12087 to 12689 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:21,160 DEBUG Processing 23/219 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,248 DEBUG Processing 42/108 atomic regions from SNP 12389 to 12991 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:21,370 DEBUG Processing 24/219 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,465 DEBUG Processing 43/108 atomic regions from SNP 12691 to 13293 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:21,587 DEBUG Processing 25/219 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,690 DEBUG Processing 44/108 atomic regions from SNP 12993 to 13595 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:21,796 DEBUG Processing 26/219 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,919 DEBUG Processing 45/108 atomic regions from SNP 13295 to 13897 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:22,004 DEBUG Processing 27/219 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,146 DEBUG Processing 46/108 atomic regions from SNP 13597 to 14199 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:22,214 DEBUG Processing 28/219 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,371 DEBUG Processing 47/108 atomic regions from SNP 13899 to 14501 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:22,423 DEBUG Processing 29/219 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,578 DEBUG Processing 48/108 atomic regions from SNP 14201 to 14803 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:22,635 DEBUG Processing 30/219 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,785 DEBUG Processing 49/108 atomic regions from SNP 14503 to 15105 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:22,852 DEBUG Processing 31/219 atomic regions from SNP 9030 to 9630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,992 DEBUG Processing 50/108 atomic regions from SNP 14805 to 15407 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:23,070 DEBUG Processing 32/219 atomic regions from SNP 9330 to 9930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,199 DEBUG Processing 51/108 atomic regions from SNP 15107 to 15709 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:23,276 DEBUG Processing 33/219 atomic regions from SNP 9630 to 10230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,404 DEBUG Processing 52/108 atomic regions from SNP 15409 to 16011 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:23,486 DEBUG Processing 34/219 atomic regions from SNP 9930 to 10530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,611 DEBUG Processing 53/108 atomic regions from SNP 15711 to 16313 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:23,692 DEBUG Processing 35/219 atomic regions from SNP 10230 to 10830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,814 DEBUG Processing 54/108 atomic regions from SNP 16013 to 16615 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:23,899 DEBUG Processing 36/219 atomic regions from SNP 10530 to 11130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,021 DEBUG Processing 55/108 atomic regions from SNP 16315 to 16917 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:24,106 DEBUG Processing 37/219 atomic regions from SNP 10830 to 11430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,230 DEBUG Processing 56/108 atomic regions from SNP 16617 to 17219 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:24,314 DEBUG Processing 38/219 atomic regions from SNP 11130 to 11730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,440 DEBUG Processing 57/108 atomic regions from SNP 16919 to 17521 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:24,530 DEBUG Processing 39/219 atomic regions from SNP 11430 to 12030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,652 DEBUG Processing 58/108 atomic regions from SNP 17221 to 17823 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:24,741 DEBUG Processing 40/219 atomic regions from SNP 11730 to 12330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,856 DEBUG Processing 59/108 atomic regions from SNP 17523 to 18125 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:24,948 DEBUG Processing 41/219 atomic regions from SNP 12030 to 12630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,060 DEBUG Processing 60/108 atomic regions from SNP 17825 to 18427 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:25,157 DEBUG Processing 42/219 atomic regions from SNP 12330 to 12930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,261 DEBUG Processing 61/108 atomic regions from SNP 18127 to 18729 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:25,365 DEBUG Processing 43/219 atomic regions from SNP 12630 to 13230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,460 DEBUG Processing 62/108 atomic regions from SNP 18429 to 19031 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:25,591 DEBUG Processing 44/219 atomic regions from SNP 12930 to 13530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,662 DEBUG Processing 63/108 atomic regions from SNP 18731 to 19333 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:25,827 DEBUG Processing 45/219 atomic regions from SNP 13230 to 13830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,865 DEBUG Processing 64/108 atomic regions from SNP 19033 to 19635 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:26,074 DEBUG Processing 46/219 atomic regions from SNP 13530 to 14130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,081 DEBUG Processing 65/108 atomic regions from SNP 19335 to 19937 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:26,288 DEBUG Processing 66/108 atomic regions from SNP 19637 to 20239 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:26,294 DEBUG Processing 47/219 atomic regions from SNP 13830 to 14430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,492 DEBUG Processing 67/108 atomic regions from SNP 19939 to 20541 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:26,503 DEBUG Processing 48/219 atomic regions from SNP 14130 to 14730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,697 DEBUG Processing 68/108 atomic regions from SNP 20241 to 20843 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:26,711 DEBUG Processing 49/219 atomic regions from SNP 14430 to 15030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,906 DEBUG Processing 69/108 atomic regions from SNP 20543 to 21145 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:26,926 DEBUG Processing 50/219 atomic regions from SNP 14730 to 15330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,109 DEBUG Processing 70/108 atomic regions from SNP 20845 to 21447 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:27,133 DEBUG Processing 51/219 atomic regions from SNP 15030 to 15630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,315 DEBUG Processing 71/108 atomic regions from SNP 21147 to 21749 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:27,344 DEBUG Processing 52/219 atomic regions from SNP 15330 to 15930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,522 DEBUG Processing 72/108 atomic regions from SNP 21449 to 22051 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:27,551 DEBUG Processing 53/219 atomic regions from SNP 15630 to 16230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,739 DEBUG Processing 73/108 atomic regions from SNP 21751 to 22353 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:27,774 DEBUG Processing 54/219 atomic regions from SNP 15930 to 16530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,943 DEBUG Processing 74/108 atomic regions from SNP 22053 to 22655 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:27,982 DEBUG Processing 55/219 atomic regions from SNP 16230 to 16830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,154 DEBUG Processing 75/108 atomic regions from SNP 22355 to 22957 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:28,199 DEBUG Processing 56/219 atomic regions from SNP 16530 to 17130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,366 DEBUG Processing 76/108 atomic regions from SNP 22657 to 23259 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:28,409 DEBUG Processing 57/219 atomic regions from SNP 16830 to 17430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,586 DEBUG Processing 77/108 atomic regions from SNP 22959 to 23561 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:28,624 DEBUG Processing 58/219 atomic regions from SNP 17130 to 17730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,799 DEBUG Processing 78/108 atomic regions from SNP 23261 to 23863 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:28,835 DEBUG Processing 59/219 atomic regions from SNP 17430 to 18030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,011 DEBUG Processing 79/108 atomic regions from SNP 23563 to 24165 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:29,051 DEBUG Processing 60/219 atomic regions from SNP 17730 to 18330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,235 DEBUG Processing 80/108 atomic regions from SNP 23865 to 24467 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:29,293 DEBUG Processing 61/219 atomic regions from SNP 18030 to 18630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,469 DEBUG Processing 81/108 atomic regions from SNP 24167 to 24769 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:29,535 DEBUG Processing 62/219 atomic regions from SNP 18330 to 18930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,705 DEBUG Processing 82/108 atomic regions from SNP 24469 to 25071 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:29,776 DEBUG Processing 63/219 atomic regions from SNP 18630 to 19230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,950 DEBUG Processing 83/108 atomic regions from SNP 24771 to 25373 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:30,033 DEBUG Processing 64/219 atomic regions from SNP 18930 to 19530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,198 DEBUG Processing 84/108 atomic regions from SNP 25073 to 25675 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:30,292 DEBUG Processing 65/219 atomic regions from SNP 19230 to 19830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,449 DEBUG Processing 85/108 atomic regions from SNP 25375 to 25977 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:30,525 DEBUG Processing 66/219 atomic regions from SNP 19530 to 20130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,697 DEBUG Processing 86/108 atomic regions from SNP 25677 to 26279 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:30,754 DEBUG Processing 67/219 atomic regions from SNP 19830 to 20430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,952 DEBUG Processing 87/108 atomic regions from SNP 25979 to 26581 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:30,983 DEBUG Processing 68/219 atomic regions from SNP 20130 to 20730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,192 DEBUG Processing 88/108 atomic regions from SNP 26281 to 26883 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:31,205 DEBUG Processing 69/219 atomic regions from SNP 20430 to 21030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,417 DEBUG Processing 89/108 atomic regions from SNP 26583 to 27185 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:31,430 DEBUG Processing 70/219 atomic regions from SNP 20730 to 21330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,636 DEBUG Processing 90/108 atomic regions from SNP 26885 to 27487 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:31,648 DEBUG Processing 71/219 atomic regions from SNP 21030 to 21630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,852 DEBUG Processing 91/108 atomic regions from SNP 27187 to 27789 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:31,869 DEBUG Processing 72/219 atomic regions from SNP 21330 to 21930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,067 DEBUG Processing 92/108 atomic regions from SNP 27489 to 28091 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:32,089 DEBUG Processing 73/219 atomic regions from SNP 21630 to 22230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,281 DEBUG Processing 93/108 atomic regions from SNP 27791 to 28393 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:32,311 DEBUG Processing 74/219 atomic regions from SNP 21930 to 22530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,495 DEBUG Processing 94/108 atomic regions from SNP 28093 to 28695 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:32,532 DEBUG Processing 75/219 atomic regions from SNP 22230 to 22830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,714 DEBUG Processing 95/108 atomic regions from SNP 28395 to 28997 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:32,752 DEBUG Processing 76/219 atomic regions from SNP 22530 to 23130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,937 DEBUG Processing 96/108 atomic regions from SNP 28697 to 29299 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:32,978 DEBUG Processing 77/219 atomic regions from SNP 22830 to 23430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,166 DEBUG Processing 97/108 atomic regions from SNP 28999 to 29601 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:33,208 DEBUG Processing 78/219 atomic regions from SNP 23130 to 23730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,405 DEBUG Processing 98/108 atomic regions from SNP 29301 to 29903 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:33,450 DEBUG Processing 79/219 atomic regions from SNP 23430 to 24030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,639 DEBUG Processing 99/108 atomic regions from SNP 29603 to 30205 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:33,688 DEBUG Processing 80/219 atomic regions from SNP 23730 to 24330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,880 DEBUG Processing 100/108 atomic regions from SNP 29905 to 30507 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:33,927 DEBUG Processing 81/219 atomic regions from SNP 24030 to 24630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,112 DEBUG Processing 101/108 atomic regions from SNP 30207 to 30809 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:34,162 DEBUG Processing 82/219 atomic regions from SNP 24330 to 24930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,350 DEBUG Processing 102/108 atomic regions from SNP 30509 to 31111 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:34,397 DEBUG Processing 83/219 atomic regions from SNP 24630 to 25230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,588 DEBUG Processing 103/108 atomic regions from SNP 30811 to 31413 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:34,637 DEBUG Processing 84/219 atomic regions from SNP 24930 to 25530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,823 DEBUG Processing 104/108 atomic regions from SNP 31113 to 31715 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:34,872 DEBUG Processing 85/219 atomic regions from SNP 25230 to 25830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,051 DEBUG Processing 105/108 atomic regions from SNP 31415 to 32017 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:35,104 DEBUG Processing 86/219 atomic regions from SNP 25530 to 26130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,278 DEBUG Processing 106/108 atomic regions from SNP 31717 to 32319 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:35,335 DEBUG Processing 87/219 atomic regions from SNP 25830 to 26430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,510 DEBUG Processing 107/108 atomic regions from SNP 32019 to 32621 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:35,565 DEBUG Processing 88/219 atomic regions from SNP 26130 to 26730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,741 DEBUG Processing 108/108 atomic regions from SNP 32321 to 32923 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:35,797 DEBUG Processing 89/219 atomic regions from SNP 26430 to 27030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,865 DEBUG Unique SNPs positions in subchromosome 1: 32924 2025-01-31 09:43:35,911 DEBUG Subchromosome time: 27.743247727048583, subchromosome SNPs: 32924 2025-01-31 09:43:35,947 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:36,029 DEBUG Processing 90/219 atomic regions from SNP 26730 to 27330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,264 DEBUG Processing 91/219 atomic regions from SNP 27030 to 27630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,492 DEBUG Processing 92/219 atomic regions from SNP 27330 to 27930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,737 DEBUG Processing 93/219 atomic regions from SNP 27630 to 28230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,011 DEBUG Processing 94/219 atomic regions from SNP 27930 to 28530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,291 DEBUG Processing 95/219 atomic regions from SNP 28230 to 28830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,635 DEBUG Processing 96/219 atomic regions from SNP 28530 to 29130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,970 DEBUG Processing 97/219 atomic regions from SNP 28830 to 29430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,292 DEBUG Processing 98/219 atomic regions from SNP 29130 to 29730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,580 DEBUG Segmenting atomic regions: 2025-01-31 09:43:38,603 DEBUG Processing 99/219 atomic regions from SNP 29430 to 30030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,700 DEBUG Processing 1/859 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,894 DEBUG Processing 100/219 atomic regions from SNP 29730 to 30330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,227 DEBUG Processing 101/219 atomic regions from SNP 30030 to 30630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,478 DEBUG Processing 102/219 atomic regions from SNP 30330 to 30930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,561 DEBUG Processing 2/859 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,849 DEBUG Processing 103/219 atomic regions from SNP 30630 to 31230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,929 DEBUG Processing 3/859 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,242 DEBUG Processing 104/219 atomic regions from SNP 30930 to 31530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,307 DEBUG Processing 4/859 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,365 DEBUG Segmenting atomic regions: 2025-01-31 09:43:40,495 DEBUG Processing 1/902 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,662 DEBUG Processing 105/219 atomic regions from SNP 31230 to 31830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,694 DEBUG Processing 5/859 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,066 DEBUG Processing 106/219 atomic regions from SNP 31530 to 32130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,130 DEBUG Processing 6/859 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,361 DEBUG Processing 2/902 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,437 DEBUG Processing 107/219 atomic regions from SNP 31830 to 32430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,536 DEBUG Processing 7/859 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,727 DEBUG Processing 3/902 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,779 DEBUG Processing 108/219 atomic regions from SNP 32130 to 32730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,929 DEBUG Processing 8/859 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,162 DEBUG Processing 4/902 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,181 DEBUG Processing 109/219 atomic regions from SNP 32430 to 33030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,278 DEBUG Processing 9/859 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,521 DEBUG Processing 110/219 atomic regions from SNP 32730 to 33330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,543 DEBUG Processing 5/902 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,608 DEBUG Processing 10/859 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,841 DEBUG Processing 111/219 atomic regions from SNP 33030 to 33630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,876 DEBUG Processing 6/902 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,907 DEBUG Processing 11/859 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,159 DEBUG Processing 112/219 atomic regions from SNP 33330 to 33930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,177 DEBUG Processing 7/902 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,190 DEBUG Processing 12/859 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,438 DEBUG Processing 113/219 atomic regions from SNP 33630 to 34230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,477 DEBUG Processing 8/902 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,522 DEBUG Processing 13/859 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,736 DEBUG Processing 114/219 atomic regions from SNP 33930 to 34530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,793 DEBUG Processing 9/902 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,813 DEBUG Processing 14/859 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,997 DEBUG Processing 115/219 atomic regions from SNP 34230 to 34830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,058 DEBUG Processing 10/902 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,094 DEBUG Processing 15/859 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,249 DEBUG Processing 116/219 atomic regions from SNP 34530 to 35130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,314 DEBUG Processing 11/902 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,343 DEBUG Processing 16/859 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,480 DEBUG Processing 117/219 atomic regions from SNP 34830 to 35430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,574 DEBUG Processing 12/902 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,605 DEBUG Processing 17/859 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,737 DEBUG Processing 118/219 atomic regions from SNP 35130 to 35730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,874 DEBUG Processing 13/902 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,904 DEBUG Processing 18/859 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,022 DEBUG Processing 119/219 atomic regions from SNP 35430 to 36030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,135 DEBUG Processing 14/902 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,212 DEBUG Processing 19/859 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,253 DEBUG Processing 120/219 atomic regions from SNP 35730 to 36330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,400 DEBUG Processing 15/902 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,458 DEBUG Processing 20/859 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,487 DEBUG Processing 121/219 atomic regions from SNP 36030 to 36630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,639 DEBUG Processing 16/902 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,698 DEBUG Processing 21/859 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,718 DEBUG Processing 122/219 atomic regions from SNP 36330 to 36930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,874 DEBUG Processing 17/902 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,950 DEBUG Processing 22/859 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,964 DEBUG Processing 123/219 atomic regions from SNP 36630 to 37230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,147 DEBUG Processing 18/902 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,201 DEBUG Processing 124/219 atomic regions from SNP 36930 to 37530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,204 DEBUG Processing 23/859 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,426 DEBUG Processing 19/902 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,476 DEBUG Processing 125/219 atomic regions from SNP 37230 to 37830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,481 DEBUG Processing 24/859 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,661 DEBUG Processing 20/902 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,713 DEBUG Processing 126/219 atomic regions from SNP 37530 to 38130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,717 DEBUG Processing 25/859 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,907 DEBUG Processing 21/902 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,950 DEBUG Processing 127/219 atomic regions from SNP 37830 to 38430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,951 DEBUG Processing 26/859 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,143 DEBUG Processing 22/902 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,174 DEBUG Processing 27/859 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,178 DEBUG Processing 128/219 atomic regions from SNP 38130 to 38730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,375 DEBUG Processing 23/902 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,398 DEBUG Processing 28/859 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,400 DEBUG Processing 129/219 atomic regions from SNP 38430 to 39030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,614 DEBUG Processing 24/902 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,621 DEBUG Processing 29/859 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,630 DEBUG Processing 130/219 atomic regions from SNP 38730 to 39330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,843 DEBUG Processing 30/859 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,843 DEBUG Processing 25/902 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,851 DEBUG Processing 131/219 atomic regions from SNP 39030 to 39630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,067 DEBUG Processing 31/859 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,078 DEBUG Processing 132/219 atomic regions from SNP 39330 to 39930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,079 DEBUG Processing 26/902 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,288 DEBUG Processing 32/859 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,300 DEBUG Processing 133/219 atomic regions from SNP 39630 to 40230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,309 DEBUG Processing 27/902 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,506 DEBUG Processing 33/859 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,518 DEBUG Processing 134/219 atomic regions from SNP 39930 to 40530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,539 DEBUG Processing 28/902 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,728 DEBUG Processing 34/859 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,738 DEBUG Processing 135/219 atomic regions from SNP 40230 to 40830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,772 DEBUG Processing 29/902 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,951 DEBUG Processing 35/859 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,958 DEBUG Processing 136/219 atomic regions from SNP 40530 to 41130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,005 DEBUG Processing 30/902 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,173 DEBUG Processing 36/859 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,177 DEBUG Processing 137/219 atomic regions from SNP 40830 to 41430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,241 DEBUG Processing 31/902 atomic regions from SNP 9030 to 9630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,388 DEBUG Processing 138/219 atomic regions from SNP 41130 to 41730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,389 DEBUG Processing 37/859 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,469 DEBUG Processing 32/902 atomic regions from SNP 9330 to 9930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,602 DEBUG Processing 139/219 atomic regions from SNP 41430 to 42030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,606 DEBUG Processing 38/859 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,706 DEBUG Processing 33/902 atomic regions from SNP 9630 to 10230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,815 DEBUG Processing 140/219 atomic regions from SNP 41730 to 42330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,825 DEBUG Processing 39/859 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,941 DEBUG Segmenting atomic regions: 2025-01-31 09:43:49,959 DEBUG Processing 34/902 atomic regions from SNP 9930 to 10530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,032 DEBUG Processing 141/219 atomic regions from SNP 42030 to 42630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,045 DEBUG Processing 40/859 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,081 DEBUG Processing 1/1024 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,186 DEBUG Processing 35/902 atomic regions from SNP 10230 to 10830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,251 DEBUG Processing 142/219 atomic regions from SNP 42330 to 42930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,268 DEBUG Processing 41/859 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,410 DEBUG Processing 36/902 atomic regions from SNP 10530 to 11130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,471 DEBUG Processing 143/219 atomic regions from SNP 42630 to 43230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,501 DEBUG Processing 42/859 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,638 DEBUG Processing 37/902 atomic regions from SNP 10830 to 11430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,689 DEBUG Processing 144/219 atomic regions from SNP 42930 to 43530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,725 DEBUG Processing 43/859 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,884 DEBUG Processing 38/902 atomic regions from SNP 11130 to 11730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,908 DEBUG Processing 145/219 atomic regions from SNP 43230 to 43830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,949 DEBUG Processing 44/859 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,019 DEBUG Processing 2/1024 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,120 DEBUG Processing 39/902 atomic regions from SNP 11430 to 12030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,129 DEBUG Processing 146/219 atomic regions from SNP 43530 to 44130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,183 DEBUG Processing 45/859 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,292 DEBUG Processing 3/1024 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,363 DEBUG Processing 40/902 atomic regions from SNP 11730 to 12330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,363 DEBUG Processing 147/219 atomic regions from SNP 43830 to 44430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,411 DEBUG Processing 46/859 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,540 DEBUG Processing 4/1024 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,600 DEBUG Processing 148/219 atomic regions from SNP 44130 to 44730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,619 DEBUG Processing 41/902 atomic regions from SNP 12030 to 12630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,653 DEBUG Processing 47/859 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,811 DEBUG Processing 5/1024 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,845 DEBUG Processing 149/219 atomic regions from SNP 44430 to 45030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,878 DEBUG Processing 42/902 atomic regions from SNP 12330 to 12930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,901 DEBUG Processing 48/859 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,076 DEBUG Processing 150/219 atomic regions from SNP 44730 to 45330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,087 DEBUG Processing 6/1024 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,111 DEBUG Processing 43/902 atomic regions from SNP 12630 to 13230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,141 DEBUG Processing 49/859 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,300 DEBUG Processing 151/219 atomic regions from SNP 45030 to 45630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,344 DEBUG Processing 44/902 atomic regions from SNP 12930 to 13530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,355 DEBUG Processing 7/1024 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,379 DEBUG Processing 50/859 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,526 DEBUG Processing 152/219 atomic regions from SNP 45330 to 45930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,577 DEBUG Processing 45/902 atomic regions from SNP 13230 to 13830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,613 DEBUG Processing 51/859 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,619 DEBUG Processing 8/1024 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,761 DEBUG Processing 153/219 atomic regions from SNP 45630 to 46230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,816 DEBUG Processing 46/902 atomic regions from SNP 13530 to 14130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,863 DEBUG Processing 52/859 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,899 DEBUG Processing 9/1024 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,034 DEBUG Processing 154/219 atomic regions from SNP 45930 to 46530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,083 DEBUG Processing 47/902 atomic regions from SNP 13830 to 14430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,134 DEBUG Processing 53/859 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,187 DEBUG Processing 10/1024 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,278 DEBUG Processing 155/219 atomic regions from SNP 46230 to 46830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,338 DEBUG Processing 48/902 atomic regions from SNP 14130 to 14730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,373 DEBUG Processing 54/859 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,460 DEBUG Processing 11/1024 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,522 DEBUG Processing 156/219 atomic regions from SNP 46530 to 47130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,589 DEBUG Processing 49/902 atomic regions from SNP 14430 to 15030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,619 DEBUG Processing 55/859 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,734 DEBUG Processing 12/1024 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,757 DEBUG Processing 157/219 atomic regions from SNP 46830 to 47430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,846 DEBUG Processing 50/902 atomic regions from SNP 14730 to 15330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,886 DEBUG Processing 56/859 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,030 DEBUG Segmenting atomic regions: 2025-01-31 09:43:54,040 DEBUG Processing 158/219 atomic regions from SNP 47130 to 47730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,049 DEBUG Processing 13/1024 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,117 DEBUG Processing 51/902 atomic regions from SNP 15030 to 15630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,152 DEBUG Processing 1/474 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:54,153 DEBUG Processing 57/859 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,405 DEBUG Processing 159/219 atomic regions from SNP 47430 to 48030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,472 DEBUG Processing 14/1024 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,487 DEBUG Processing 2/474 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:54,504 DEBUG Processing 52/902 atomic regions from SNP 15330 to 15930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,532 DEBUG Processing 58/859 atomic regions from SNP 17157 to 17757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,677 DEBUG Processing 160/219 atomic regions from SNP 47730 to 48330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,732 DEBUG Processing 3/474 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:54,751 DEBUG Processing 15/1024 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,757 DEBUG Processing 53/902 atomic regions from SNP 15630 to 16230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,786 DEBUG Processing 59/859 atomic regions from SNP 17457 to 18057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,001 DEBUG Processing 161/219 atomic regions from SNP 48030 to 48630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,021 DEBUG Processing 4/474 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,053 DEBUG Processing 54/902 atomic regions from SNP 15930 to 16530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,065 DEBUG Processing 60/859 atomic regions from SNP 17757 to 18357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,068 DEBUG Processing 16/1024 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,260 DEBUG Processing 162/219 atomic regions from SNP 48330 to 48930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,285 DEBUG Processing 5/474 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,323 DEBUG Processing 55/902 atomic regions from SNP 16230 to 16830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,326 DEBUG Processing 61/859 atomic regions from SNP 18057 to 18657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,371 DEBUG Processing 17/1024 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,588 DEBUG Processing 163/219 atomic regions from SNP 48630 to 49230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,620 DEBUG Processing 6/474 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,679 DEBUG Processing 62/859 atomic regions from SNP 18357 to 18957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,686 DEBUG Processing 56/902 atomic regions from SNP 16530 to 17130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,708 DEBUG Segmenting atomic regions: 2025-01-31 09:43:55,735 DEBUG Processing 18/1024 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,840 DEBUG Processing 164/219 atomic regions from SNP 48930 to 49530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,872 DEBUG Processing 1/1135 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,944 DEBUG Processing 7/474 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,062 DEBUG Processing 63/859 atomic regions from SNP 18657 to 19257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,100 DEBUG Processing 57/902 atomic regions from SNP 16830 to 17430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,160 DEBUG Processing 19/1024 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,177 DEBUG Processing 165/219 atomic regions from SNP 49230 to 49830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:56,189 DEBUG Processing 8/474 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,304 DEBUG Processing 64/859 atomic regions from SNP 18957 to 19557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,353 DEBUG Processing 58/902 atomic regions from SNP 17130 to 17730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,507 DEBUG Processing 166/219 atomic regions from SNP 49530 to 50130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:56,534 DEBUG Processing 20/1024 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,583 DEBUG Processing 9/474 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,678 DEBUG Processing 65/859 atomic regions from SNP 19257 to 19857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,700 DEBUG Processing 59/902 atomic regions from SNP 17430 to 18030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,862 DEBUG Processing 2/1135 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,929 DEBUG Processing 167/219 atomic regions from SNP 49830 to 50430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:56,966 DEBUG Processing 10/474 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,980 DEBUG Processing 21/1024 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,998 DEBUG Processing 66/859 atomic regions from SNP 19557 to 20157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,020 DEBUG Processing 60/902 atomic regions from SNP 17730 to 18330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,281 DEBUG Processing 3/1135 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,331 DEBUG Processing 168/219 atomic regions from SNP 50130 to 50730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:57,375 DEBUG Processing 11/474 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:57,383 DEBUG Processing 67/859 atomic regions from SNP 19857 to 20457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,386 DEBUG Processing 22/1024 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,392 DEBUG Processing 61/902 atomic regions from SNP 18030 to 18630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,575 DEBUG Processing 4/1135 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,596 DEBUG Processing 169/219 atomic regions from SNP 50430 to 51030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:57,659 DEBUG Processing 68/859 atomic regions from SNP 20157 to 20757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,665 DEBUG Processing 12/474 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:57,672 DEBUG Processing 62/902 atomic regions from SNP 18330 to 18930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,696 DEBUG Processing 23/1024 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,859 DEBUG Processing 170/219 atomic regions from SNP 50730 to 51330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:57,867 DEBUG Processing 5/1135 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,999 DEBUG Processing 13/474 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,006 DEBUG Processing 69/859 atomic regions from SNP 20457 to 21057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,008 DEBUG Processing 63/902 atomic regions from SNP 18630 to 19230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,062 DEBUG Processing 24/1024 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,187 DEBUG Processing 171/219 atomic regions from SNP 51030 to 51630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,225 DEBUG Processing 6/1135 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,271 DEBUG Processing 14/474 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,275 DEBUG Processing 70/859 atomic regions from SNP 20757 to 21357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,296 DEBUG Processing 64/902 atomic regions from SNP 18930 to 19530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,361 DEBUG Processing 25/1024 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,461 DEBUG Processing 172/219 atomic regions from SNP 51330 to 51930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,529 DEBUG Processing 7/1135 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,600 DEBUG Processing 15/474 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,612 DEBUG Processing 71/859 atomic regions from SNP 21057 to 21657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,640 DEBUG Processing 65/902 atomic regions from SNP 19230 to 19830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,700 DEBUG Processing 26/1024 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,788 DEBUG Processing 173/219 atomic regions from SNP 51630 to 52230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,894 DEBUG Processing 16/474 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,910 DEBUG Processing 72/859 atomic regions from SNP 21357 to 21957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,916 DEBUG Processing 8/1135 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,953 DEBUG Processing 66/902 atomic regions from SNP 19530 to 20130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,034 DEBUG Processing 27/1024 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,069 DEBUG Processing 174/219 atomic regions from SNP 51930 to 52530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,284 DEBUG Processing 17/474 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:59,305 DEBUG Processing 73/859 atomic regions from SNP 21657 to 22257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,370 DEBUG Processing 9/1135 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,457 DEBUG Processing 67/902 atomic regions from SNP 19830 to 20430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,470 DEBUG Processing 175/219 atomic regions from SNP 52230 to 52830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,481 DEBUG Processing 28/1024 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,644 DEBUG Processing 74/859 atomic regions from SNP 21957 to 22557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,650 DEBUG Processing 18/474 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:59,710 DEBUG Processing 10/1135 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,807 DEBUG Processing 68/902 atomic regions from SNP 20130 to 20730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,822 DEBUG Processing 176/219 atomic regions from SNP 52530 to 53130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,853 DEBUG Processing 29/1024 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,892 DEBUG Processing 19/474 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:59,913 DEBUG Processing 75/859 atomic regions from SNP 22257 to 22857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,010 DEBUG Processing 11/1135 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,061 DEBUG Processing 69/902 atomic regions from SNP 20430 to 21030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,077 DEBUG Processing 177/219 atomic regions from SNP 52830 to 53430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,130 DEBUG Processing 20/474 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:00,131 DEBUG Processing 30/1024 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,159 DEBUG Processing 76/859 atomic regions from SNP 22557 to 23157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,285 DEBUG Processing 12/1135 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,306 DEBUG Processing 70/902 atomic regions from SNP 20730 to 21330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,318 DEBUG Processing 178/219 atomic regions from SNP 53130 to 53730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,371 DEBUG Processing 21/474 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:00,414 DEBUG Processing 77/859 atomic regions from SNP 22857 to 23457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,417 DEBUG Processing 31/1024 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,575 DEBUG Processing 71/902 atomic regions from SNP 21030 to 21630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,586 DEBUG Processing 179/219 atomic regions from SNP 53430 to 54030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,591 DEBUG Processing 13/1135 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,623 DEBUG Processing 22/474 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:00,681 DEBUG Processing 78/859 atomic regions from SNP 23157 to 23757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,738 DEBUG Processing 32/1024 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,837 DEBUG Processing 72/902 atomic regions from SNP 21330 to 21930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,840 DEBUG Processing 180/219 atomic regions from SNP 53730 to 54330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,876 DEBUG Processing 23/474 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:00,900 DEBUG Processing 14/1135 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,930 DEBUG Processing 79/859 atomic regions from SNP 23457 to 24057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,012 DEBUG Processing 33/1024 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,091 DEBUG Processing 181/219 atomic regions from SNP 54030 to 54630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,092 DEBUG Processing 73/902 atomic regions from SNP 21630 to 22230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,112 DEBUG Processing 24/474 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,168 DEBUG Processing 80/859 atomic regions from SNP 23757 to 24357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,175 DEBUG Processing 15/1135 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,273 DEBUG Processing 34/1024 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,336 DEBUG Processing 182/219 atomic regions from SNP 54330 to 54930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,345 DEBUG Processing 74/902 atomic regions from SNP 21930 to 22530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,351 DEBUG Processing 25/474 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,396 DEBUG Processing 81/859 atomic regions from SNP 24057 to 24657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,445 DEBUG Processing 16/1135 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,526 DEBUG Processing 35/1024 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,581 DEBUG Processing 183/219 atomic regions from SNP 54630 to 55230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,595 DEBUG Processing 26/474 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,599 DEBUG Processing 75/902 atomic regions from SNP 22230 to 22830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,633 DEBUG Processing 82/859 atomic regions from SNP 24357 to 24957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,720 DEBUG Processing 17/1135 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,785 DEBUG Processing 36/1024 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,824 DEBUG Processing 184/219 atomic regions from SNP 54930 to 55530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,841 DEBUG Processing 27/474 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,855 DEBUG Processing 76/902 atomic regions from SNP 22530 to 23130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,869 DEBUG Processing 83/859 atomic regions from SNP 24657 to 25257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,989 DEBUG Processing 18/1135 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,042 DEBUG Processing 37/1024 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,055 DEBUG Processing 185/219 atomic regions from SNP 55230 to 55830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,075 DEBUG Processing 28/474 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:02,104 DEBUG Processing 77/902 atomic regions from SNP 22830 to 23430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,107 DEBUG Processing 84/859 atomic regions from SNP 24957 to 25557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,258 DEBUG Processing 19/1135 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,286 DEBUG Processing 186/219 atomic regions from SNP 55530 to 56130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,301 DEBUG Processing 29/474 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:02,303 DEBUG Processing 38/1024 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,335 DEBUG Processing 85/859 atomic regions from SNP 25257 to 25857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,341 DEBUG Processing 78/902 atomic regions from SNP 23130 to 23730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,518 DEBUG Processing 187/219 atomic regions from SNP 55830 to 56430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,523 DEBUG Processing 20/1135 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,525 DEBUG Processing 30/474 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:02,562 DEBUG Processing 39/1024 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,565 DEBUG Processing 86/859 atomic regions from SNP 25557 to 26157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,577 DEBUG Processing 79/902 atomic regions from SNP 23430 to 24030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,751 DEBUG Processing 188/219 atomic regions from SNP 56130 to 56730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,753 DEBUG Processing 31/474 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:02,792 DEBUG Processing 21/1135 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,801 DEBUG Processing 87/859 atomic regions from SNP 25857 to 26457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,816 DEBUG Processing 80/902 atomic regions from SNP 23730 to 24330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,822 DEBUG Processing 40/1024 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,985 DEBUG Processing 32/474 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:02,989 DEBUG Processing 189/219 atomic regions from SNP 56430 to 57030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,033 DEBUG Processing 88/859 atomic regions from SNP 26157 to 26757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,059 DEBUG Processing 81/902 atomic regions from SNP 24030 to 24630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,062 DEBUG Processing 22/1135 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,079 DEBUG Processing 41/1024 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,210 DEBUG Processing 33/474 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,220 DEBUG Processing 190/219 atomic regions from SNP 56730 to 57330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,264 DEBUG Processing 89/859 atomic regions from SNP 26457 to 27057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,302 DEBUG Processing 82/902 atomic regions from SNP 24330 to 24930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,332 DEBUG Processing 23/1135 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,340 DEBUG Processing 42/1024 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,429 DEBUG Processing 34/474 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,448 DEBUG Processing 191/219 atomic regions from SNP 57030 to 57630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,493 DEBUG Processing 90/859 atomic regions from SNP 26757 to 27357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,549 DEBUG Processing 83/902 atomic regions from SNP 24630 to 25230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,594 DEBUG Processing 43/1024 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,603 DEBUG Processing 24/1135 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,643 DEBUG Processing 35/474 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,666 DEBUG Processing 192/219 atomic regions from SNP 57330 to 57930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,712 DEBUG Processing 91/859 atomic regions from SNP 27057 to 27657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,788 DEBUG Processing 84/902 atomic regions from SNP 24930 to 25530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,851 DEBUG Processing 44/1024 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,865 DEBUG Processing 36/474 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,870 DEBUG Processing 25/1135 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,888 DEBUG Processing 193/219 atomic regions from SNP 57630 to 58230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,929 DEBUG Processing 92/859 atomic regions from SNP 27357 to 27957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,023 DEBUG Processing 85/902 atomic regions from SNP 25230 to 25830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,112 DEBUG Processing 45/1024 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,118 DEBUG Processing 37/474 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:04,130 DEBUG Processing 194/219 atomic regions from SNP 57930 to 58530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,150 DEBUG Processing 26/1135 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,175 DEBUG Processing 93/859 atomic regions from SNP 27657 to 28257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,263 DEBUG Processing 86/902 atomic regions from SNP 25530 to 26130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,354 DEBUG Processing 38/474 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:04,369 DEBUG Processing 195/219 atomic regions from SNP 58230 to 58830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,372 DEBUG Processing 46/1024 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,410 DEBUG Processing 94/859 atomic regions from SNP 27957 to 28557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,413 DEBUG Processing 27/1135 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,491 DEBUG Processing 87/902 atomic regions from SNP 25830 to 26430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,584 DEBUG Processing 39/474 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:04,605 DEBUG Processing 196/219 atomic regions from SNP 58530 to 59130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,628 DEBUG Processing 47/1024 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,638 DEBUG Processing 95/859 atomic regions from SNP 28257 to 28857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,680 DEBUG Processing 28/1135 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,722 DEBUG Processing 88/902 atomic regions from SNP 26130 to 26730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,803 DEBUG Processing 40/474 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:04,831 DEBUG Processing 197/219 atomic regions from SNP 58830 to 59430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,862 DEBUG Processing 96/859 atomic regions from SNP 28557 to 29157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,880 DEBUG Processing 48/1024 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,938 DEBUG Processing 29/1135 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,970 DEBUG Processing 89/902 atomic regions from SNP 26430 to 27030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,023 DEBUG Processing 41/474 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:05,056 DEBUG Processing 198/219 atomic regions from SNP 59130 to 59730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,082 DEBUG Processing 97/859 atomic regions from SNP 28857 to 29457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,125 DEBUG Processing 49/1024 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,197 DEBUG Processing 30/1135 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,226 DEBUG Processing 90/902 atomic regions from SNP 26730 to 27330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,249 DEBUG Processing 42/474 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:05,285 DEBUG Processing 199/219 atomic regions from SNP 59430 to 60030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,308 DEBUG Processing 98/859 atomic regions from SNP 29157 to 29757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,368 DEBUG Processing 50/1024 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,453 DEBUG Processing 31/1135 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,466 DEBUG Processing 91/902 atomic regions from SNP 27030 to 27630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,480 DEBUG Processing 43/474 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:05,523 DEBUG Processing 200/219 atomic regions from SNP 59730 to 60330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,534 DEBUG Processing 99/859 atomic regions from SNP 29457 to 30057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,616 DEBUG Processing 51/1024 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,713 DEBUG Processing 44/474 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:05,722 DEBUG Processing 32/1135 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,731 DEBUG Processing 92/902 atomic regions from SNP 27330 to 27930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,759 DEBUG Processing 100/859 atomic regions from SNP 29757 to 30357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,761 DEBUG Processing 201/219 atomic regions from SNP 60030 to 60630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,859 DEBUG Processing 52/1024 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,937 DEBUG Processing 45/474 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:05,983 DEBUG Processing 101/859 atomic regions from SNP 30057 to 30657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,983 DEBUG Processing 33/1135 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,984 DEBUG Processing 93/902 atomic regions from SNP 27630 to 28230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,998 DEBUG Processing 202/219 atomic regions from SNP 60330 to 60930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,101 DEBUG Processing 53/1024 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,154 DEBUG Processing 46/474 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:06,212 DEBUG Processing 102/859 atomic regions from SNP 30357 to 30957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,225 DEBUG Processing 94/902 atomic regions from SNP 27930 to 28530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,230 DEBUG Processing 203/219 atomic regions from SNP 60630 to 61230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,253 DEBUG Processing 34/1135 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,349 DEBUG Processing 54/1024 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,369 DEBUG Processing 47/474 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:06,436 DEBUG Processing 103/859 atomic regions from SNP 30657 to 31257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,456 DEBUG Processing 95/902 atomic regions from SNP 28230 to 28830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,458 DEBUG Processing 204/219 atomic regions from SNP 60930 to 61530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,516 DEBUG Processing 35/1135 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,590 DEBUG Processing 48/474 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:06,599 DEBUG Processing 55/1024 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,660 DEBUG Processing 104/859 atomic regions from SNP 30957 to 31557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,688 DEBUG Processing 205/219 atomic regions from SNP 61230 to 61830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,692 DEBUG Processing 96/902 atomic regions from SNP 28530 to 29130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,780 DEBUG Processing 36/1135 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,806 DEBUG Processing 49/474 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:06,850 DEBUG Processing 56/1024 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,891 DEBUG Processing 105/859 atomic regions from SNP 31257 to 31857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,923 DEBUG Processing 206/219 atomic regions from SNP 61530 to 62130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,933 DEBUG Processing 97/902 atomic regions from SNP 28830 to 29430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,027 DEBUG Processing 50/474 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:07,046 DEBUG Processing 37/1135 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,101 DEBUG Processing 57/1024 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,112 DEBUG Processing 106/859 atomic regions from SNP 31557 to 32157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,148 DEBUG Processing 207/219 atomic regions from SNP 61830 to 62430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,167 DEBUG Processing 98/902 atomic regions from SNP 29130 to 29730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,247 DEBUG Processing 51/474 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:07,325 DEBUG Processing 38/1135 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,342 DEBUG Processing 107/859 atomic regions from SNP 31857 to 32457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,360 DEBUG Processing 58/1024 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,379 DEBUG Processing 208/219 atomic regions from SNP 62130 to 62730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,409 DEBUG Processing 99/902 atomic regions from SNP 29430 to 30030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,476 DEBUG Processing 52/474 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:07,581 DEBUG Processing 108/859 atomic regions from SNP 32157 to 32757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,619 DEBUG Processing 209/219 atomic regions from SNP 62430 to 63030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,623 DEBUG Processing 39/1135 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,626 DEBUG Processing 59/1024 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,655 DEBUG Processing 100/902 atomic regions from SNP 29730 to 30330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,705 DEBUG Processing 53/474 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:07,816 DEBUG Processing 109/859 atomic regions from SNP 32457 to 33057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,847 DEBUG Processing 210/219 atomic regions from SNP 62730 to 63330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,882 DEBUG Processing 60/1024 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,893 DEBUG Processing 40/1135 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,895 DEBUG Processing 101/902 atomic regions from SNP 30030 to 30630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,934 DEBUG Processing 54/474 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:08,065 DEBUG Processing 110/859 atomic regions from SNP 32757 to 33357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,089 DEBUG Processing 211/219 atomic regions from SNP 63030 to 63630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,138 DEBUG Processing 102/902 atomic regions from SNP 30330 to 30930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,141 DEBUG Processing 61/1024 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,163 DEBUG Processing 41/1135 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,167 DEBUG Processing 55/474 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:08,304 DEBUG Processing 111/859 atomic regions from SNP 33057 to 33657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,353 DEBUG Processing 212/219 atomic regions from SNP 63330 to 63930 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,375 DEBUG Processing 103/902 atomic regions from SNP 30630 to 31230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,397 DEBUG Processing 56/474 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:08,404 DEBUG Processing 62/1024 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,437 DEBUG Processing 42/1135 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,530 DEBUG Processing 112/859 atomic regions from SNP 33357 to 33957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,583 DEBUG Processing 213/219 atomic regions from SNP 63630 to 64230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,614 DEBUG Processing 104/902 atomic regions from SNP 30930 to 31530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,629 DEBUG Processing 57/474 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:08,665 DEBUG Processing 63/1024 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,708 DEBUG Processing 43/1135 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,764 DEBUG Processing 113/859 atomic regions from SNP 33657 to 34257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,819 DEBUG Processing 214/219 atomic regions from SNP 63930 to 64530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,844 DEBUG Processing 105/902 atomic regions from SNP 31230 to 31830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,850 DEBUG Processing 58/474 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:08,921 DEBUG Processing 64/1024 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,972 DEBUG Processing 44/1135 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,028 DEBUG Processing 114/859 atomic regions from SNP 33957 to 34557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,080 DEBUG Processing 59/474 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:09,084 DEBUG Processing 215/219 atomic regions from SNP 64230 to 64830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,087 DEBUG Processing 106/902 atomic regions from SNP 31530 to 32130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,190 DEBUG Processing 65/1024 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,241 DEBUG Processing 45/1135 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,294 DEBUG Processing 115/859 atomic regions from SNP 34257 to 34857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,304 DEBUG Processing 60/474 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:09,325 DEBUG Processing 107/902 atomic regions from SNP 31830 to 32430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,346 DEBUG Processing 216/219 atomic regions from SNP 64530 to 65130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,440 DEBUG Processing 66/1024 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,502 DEBUG Processing 46/1135 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,532 DEBUG Processing 61/474 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:09,549 DEBUG Processing 116/859 atomic regions from SNP 34557 to 35157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,564 DEBUG Processing 108/902 atomic regions from SNP 32130 to 32730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,603 DEBUG Processing 217/219 atomic regions from SNP 64830 to 65430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,693 DEBUG Processing 67/1024 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,756 DEBUG Processing 62/474 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:09,762 DEBUG Processing 47/1135 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,806 DEBUG Processing 109/902 atomic regions from SNP 32430 to 33030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,811 DEBUG Processing 117/859 atomic regions from SNP 34857 to 35457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,846 DEBUG Processing 218/219 atomic regions from SNP 65130 to 65730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,944 DEBUG Processing 68/1024 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,977 DEBUG Processing 63/474 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:10,026 DEBUG Processing 48/1135 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,044 DEBUG Processing 110/902 atomic regions from SNP 32730 to 33330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,065 DEBUG Processing 118/859 atomic regions from SNP 35157 to 35757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,101 DEBUG Processing 219/219 atomic regions from SNP 65430 to 66030 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,193 DEBUG Processing 64/474 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:10,194 DEBUG Processing 69/1024 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,246 DEBUG Unique SNPs positions in subchromosome 1: 66031 2025-01-31 09:44:10,273 DEBUG Processing 111/902 atomic regions from SNP 33030 to 33630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,291 DEBUG Processing 49/1135 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,292 DEBUG Processing 119/859 atomic regions from SNP 35457 to 36057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,418 DEBUG Subchromosome time: 62.215036374051124, subchromosome SNPs: 66031 2025-01-31 09:44:10,418 DEBUG Processing 65/474 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:10,446 DEBUG Processing 70/1024 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,468 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:10,499 DEBUG Processing 112/902 atomic regions from SNP 33330 to 33930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,523 DEBUG Processing 120/859 atomic regions from SNP 35757 to 36357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,558 DEBUG Processing 50/1135 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,654 DEBUG Processing 66/474 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:10,713 DEBUG Processing 71/1024 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,736 DEBUG Processing 113/902 atomic regions from SNP 33630 to 34230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,781 DEBUG Processing 121/859 atomic regions from SNP 36057 to 36657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,825 DEBUG Processing 51/1135 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,883 DEBUG Processing 67/474 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:10,967 DEBUG Processing 72/1024 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,972 DEBUG Processing 114/902 atomic regions from SNP 33930 to 34530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,006 DEBUG Processing 122/859 atomic regions from SNP 36357 to 36957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,087 DEBUG Processing 52/1135 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,105 DEBUG Processing 68/474 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:11,209 DEBUG Processing 115/902 atomic regions from SNP 34230 to 34830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,218 DEBUG Processing 73/1024 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,232 DEBUG Processing 123/859 atomic regions from SNP 36657 to 37257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,321 DEBUG Processing 69/474 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:11,349 DEBUG Processing 53/1135 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,447 DEBUG Processing 116/902 atomic regions from SNP 34530 to 35130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,460 DEBUG Processing 124/859 atomic regions from SNP 36957 to 37557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,477 DEBUG Processing 74/1024 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,547 DEBUG Processing 70/474 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:11,610 DEBUG Processing 54/1135 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,684 DEBUG Processing 117/902 atomic regions from SNP 34830 to 35430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,691 DEBUG Processing 125/859 atomic regions from SNP 37257 to 37857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,730 DEBUG Processing 75/1024 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,786 DEBUG Processing 71/474 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:11,880 DEBUG Processing 55/1135 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,915 DEBUG Processing 118/902 atomic regions from SNP 35130 to 35730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,918 DEBUG Processing 126/859 atomic regions from SNP 37557 to 38157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,982 DEBUG Processing 76/1024 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,034 DEBUG Processing 72/474 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:12,147 DEBUG Processing 119/902 atomic regions from SNP 35430 to 36030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,148 DEBUG Processing 56/1135 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,148 DEBUG Processing 127/859 atomic regions from SNP 37857 to 38457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,229 DEBUG Processing 77/1024 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,265 DEBUG Processing 73/474 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:12,375 DEBUG Processing 128/859 atomic regions from SNP 38157 to 38757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,382 DEBUG Processing 120/902 atomic regions from SNP 35730 to 36330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,412 DEBUG Processing 57/1135 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,481 DEBUG Processing 74/474 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:12,482 DEBUG Processing 78/1024 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,602 DEBUG Processing 129/859 atomic regions from SNP 38457 to 39057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,618 DEBUG Processing 121/902 atomic regions from SNP 36030 to 36630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,676 DEBUG Processing 58/1135 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,697 DEBUG Processing 75/474 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:12,736 DEBUG Processing 79/1024 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,831 DEBUG Processing 130/859 atomic regions from SNP 38757 to 39357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,855 DEBUG Processing 122/902 atomic regions from SNP 36330 to 36930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,919 DEBUG Processing 76/474 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:12,953 DEBUG Processing 59/1135 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,993 DEBUG Processing 80/1024 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,060 DEBUG Processing 131/859 atomic regions from SNP 39057 to 39657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,091 DEBUG Processing 123/902 atomic regions from SNP 36630 to 37230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,144 DEBUG Processing 77/474 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:13,222 DEBUG Processing 60/1135 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,251 DEBUG Processing 81/1024 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,291 DEBUG Processing 132/859 atomic regions from SNP 39357 to 39957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,321 DEBUG Processing 124/902 atomic regions from SNP 36930 to 37530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,364 DEBUG Processing 78/474 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:13,489 DEBUG Processing 61/1135 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,512 DEBUG Processing 82/1024 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,529 DEBUG Processing 133/859 atomic regions from SNP 39657 to 40257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,554 DEBUG Processing 125/902 atomic regions from SNP 37230 to 37830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,583 DEBUG Processing 79/474 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:13,754 DEBUG Processing 62/1135 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,767 DEBUG Processing 134/859 atomic regions from SNP 39957 to 40557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,772 DEBUG Processing 83/1024 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,792 DEBUG Processing 126/902 atomic regions from SNP 37530 to 38130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,804 DEBUG Processing 80/474 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,016 DEBUG Processing 135/859 atomic regions from SNP 40257 to 40857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,026 DEBUG Processing 63/1135 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,029 DEBUG Processing 81/474 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,032 DEBUG Processing 127/902 atomic regions from SNP 37830 to 38430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,039 DEBUG Processing 84/1024 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,261 DEBUG Processing 82/474 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,271 DEBUG Processing 136/859 atomic regions from SNP 40557 to 41157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,274 DEBUG Processing 128/902 atomic regions from SNP 38130 to 38730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,303 DEBUG Processing 64/1135 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,306 DEBUG Processing 85/1024 atomic regions from SNP 25284 to 25885 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,495 DEBUG Processing 83/474 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,513 DEBUG Processing 137/859 atomic regions from SNP 40857 to 41457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,518 DEBUG Processing 129/902 atomic regions from SNP 38430 to 39030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,574 DEBUG Processing 86/1024 atomic regions from SNP 25585 to 26186 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,581 DEBUG Processing 65/1135 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,745 DEBUG Processing 84/474 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,748 DEBUG Processing 138/859 atomic regions from SNP 41157 to 41757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,763 DEBUG Processing 130/902 atomic regions from SNP 38730 to 39330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,835 DEBUG Processing 87/1024 atomic regions from SNP 25886 to 26487 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,849 DEBUG Processing 66/1135 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,979 DEBUG Processing 139/859 atomic regions from SNP 41457 to 42057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,987 DEBUG Processing 85/474 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,005 DEBUG Processing 131/902 atomic regions from SNP 39030 to 39630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,093 DEBUG Processing 88/1024 atomic regions from SNP 26187 to 26788 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,115 DEBUG Processing 67/1135 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,205 DEBUG Processing 140/859 atomic regions from SNP 41757 to 42357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,210 DEBUG Processing 86/474 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,242 DEBUG Processing 132/902 atomic regions from SNP 39330 to 39930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,373 DEBUG Processing 89/1024 atomic regions from SNP 26488 to 27089 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,379 DEBUG Processing 68/1135 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,428 DEBUG Processing 141/859 atomic regions from SNP 42057 to 42657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,438 DEBUG Processing 87/474 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,474 DEBUG Processing 133/902 atomic regions from SNP 39630 to 40230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,638 DEBUG Processing 90/1024 atomic regions from SNP 26789 to 27390 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,645 DEBUG Processing 69/1135 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,658 DEBUG Processing 88/474 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,658 DEBUG Processing 142/859 atomic regions from SNP 42357 to 42957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,706 DEBUG Processing 134/902 atomic regions from SNP 39930 to 40530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,880 DEBUG Processing 89/474 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,893 DEBUG Processing 143/859 atomic regions from SNP 42657 to 43257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,899 DEBUG Processing 91/1024 atomic regions from SNP 27090 to 27691 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,915 DEBUG Processing 70/1135 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,939 DEBUG Processing 135/902 atomic regions from SNP 40230 to 40830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,097 DEBUG Processing 90/474 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,130 DEBUG Processing 144/859 atomic regions from SNP 42957 to 43557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,161 DEBUG Processing 92/1024 atomic regions from SNP 27391 to 27992 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,174 DEBUG Processing 136/902 atomic regions from SNP 40530 to 41130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,186 DEBUG Processing 71/1135 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,312 DEBUG Processing 91/474 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,362 DEBUG Processing 145/859 atomic regions from SNP 43257 to 43857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,407 DEBUG Processing 137/902 atomic regions from SNP 40830 to 41430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,446 DEBUG Processing 93/1024 atomic regions from SNP 27692 to 28293 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,455 DEBUG Processing 72/1135 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,526 DEBUG Processing 92/474 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,587 DEBUG Processing 146/859 atomic regions from SNP 43557 to 44157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,638 DEBUG Processing 138/902 atomic regions from SNP 41130 to 41730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,718 DEBUG Processing 94/1024 atomic regions from SNP 27993 to 28594 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,725 DEBUG Processing 73/1135 atomic regions from SNP 21672 to 22272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,750 DEBUG Processing 93/474 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,813 DEBUG Processing 147/859 atomic regions from SNP 43857 to 44457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,874 DEBUG Processing 139/902 atomic regions from SNP 41430 to 42030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,970 DEBUG Processing 94/474 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,989 DEBUG Processing 74/1135 atomic regions from SNP 21972 to 22572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,992 DEBUG Processing 95/1024 atomic regions from SNP 28294 to 28895 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,048 DEBUG Processing 148/859 atomic regions from SNP 44157 to 44757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,107 DEBUG Processing 140/902 atomic regions from SNP 41730 to 42330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,191 DEBUG Processing 95/474 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,247 DEBUG Processing 96/1024 atomic regions from SNP 28595 to 29196 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,254 DEBUG Processing 75/1135 atomic regions from SNP 22272 to 22872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,287 DEBUG Processing 149/859 atomic regions from SNP 44457 to 45057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,340 DEBUG Processing 141/902 atomic regions from SNP 42030 to 42630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,410 DEBUG Processing 96/474 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,501 DEBUG Processing 97/1024 atomic regions from SNP 28896 to 29497 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,518 DEBUG Processing 76/1135 atomic regions from SNP 22572 to 23172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,548 DEBUG Processing 150/859 atomic regions from SNP 44757 to 45357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,573 DEBUG Processing 142/902 atomic regions from SNP 42330 to 42930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,632 DEBUG Processing 97/474 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,761 DEBUG Processing 98/1024 atomic regions from SNP 29197 to 29798 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,788 DEBUG Processing 77/1135 atomic regions from SNP 22872 to 23472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,808 DEBUG Processing 151/859 atomic regions from SNP 45057 to 45657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,810 DEBUG Processing 143/902 atomic regions from SNP 42630 to 43230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,867 DEBUG Processing 98/474 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,023 DEBUG Processing 99/1024 atomic regions from SNP 29498 to 30099 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,055 DEBUG Processing 144/902 atomic regions from SNP 42930 to 43530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,062 DEBUG Processing 78/1135 atomic regions from SNP 23172 to 23772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,076 DEBUG Processing 152/859 atomic regions from SNP 45357 to 45957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,108 DEBUG Processing 99/474 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,284 DEBUG Processing 100/1024 atomic regions from SNP 29799 to 30400 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,308 DEBUG Processing 145/902 atomic regions from SNP 43230 to 43830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,334 DEBUG Processing 79/1135 atomic regions from SNP 23472 to 24072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,340 DEBUG Processing 100/474 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,345 DEBUG Processing 153/859 atomic regions from SNP 45657 to 46257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,543 DEBUG Processing 146/902 atomic regions from SNP 43530 to 44130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,545 DEBUG Processing 101/1024 atomic regions from SNP 30100 to 30701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,576 DEBUG Processing 101/474 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,606 DEBUG Processing 80/1135 atomic regions from SNP 23772 to 24372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,611 DEBUG Processing 154/859 atomic regions from SNP 45957 to 46557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,777 DEBUG Processing 147/902 atomic regions from SNP 43830 to 44430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,796 DEBUG Processing 102/474 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,802 DEBUG Processing 102/1024 atomic regions from SNP 30401 to 31002 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,855 DEBUG Processing 155/859 atomic regions from SNP 46257 to 46857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,873 DEBUG Processing 81/1135 atomic regions from SNP 24072 to 24672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,013 DEBUG Processing 148/902 atomic regions from SNP 44130 to 44730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,021 DEBUG Processing 103/474 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,055 DEBUG Processing 103/1024 atomic regions from SNP 30702 to 31303 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,091 DEBUG Processing 156/859 atomic regions from SNP 46557 to 47157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,142 DEBUG Processing 82/1135 atomic regions from SNP 24372 to 24972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,242 DEBUG Processing 104/474 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,247 DEBUG Processing 149/902 atomic regions from SNP 44430 to 45030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,313 DEBUG Processing 104/1024 atomic regions from SNP 31003 to 31604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,328 DEBUG Processing 157/859 atomic regions from SNP 46857 to 47457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,416 DEBUG Processing 83/1135 atomic regions from SNP 24672 to 25272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,460 DEBUG Processing 105/474 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,474 DEBUG Processing 150/902 atomic regions from SNP 44730 to 45330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,557 DEBUG Processing 158/859 atomic regions from SNP 47157 to 47757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,567 DEBUG Processing 105/1024 atomic regions from SNP 31304 to 31905 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,676 DEBUG Processing 106/474 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,680 DEBUG Processing 84/1135 atomic regions from SNP 24972 to 25572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,700 DEBUG Processing 151/902 atomic regions from SNP 45030 to 45630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,793 DEBUG Processing 159/859 atomic regions from SNP 47457 to 48057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,839 DEBUG Processing 106/1024 atomic regions from SNP 31605 to 32206 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,901 DEBUG Processing 107/474 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,931 DEBUG Processing 152/902 atomic regions from SNP 45330 to 45930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,944 DEBUG Processing 85/1135 atomic regions from SNP 25272 to 25872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,046 DEBUG Processing 160/859 atomic regions from SNP 47757 to 48357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,114 DEBUG Processing 107/1024 atomic regions from SNP 31906 to 32507 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,125 DEBUG Processing 108/474 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,166 DEBUG Processing 153/902 atomic regions from SNP 45630 to 46230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,209 DEBUG Processing 86/1135 atomic regions from SNP 25572 to 26172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,274 DEBUG Processing 161/859 atomic regions from SNP 48057 to 48657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,352 DEBUG Processing 109/474 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,372 DEBUG Processing 108/1024 atomic regions from SNP 32207 to 32808 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,401 DEBUG Processing 154/902 atomic regions from SNP 45930 to 46530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,476 DEBUG Processing 87/1135 atomic regions from SNP 25872 to 26472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,505 DEBUG Processing 162/859 atomic regions from SNP 48357 to 48957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,585 DEBUG Processing 110/474 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,627 DEBUG Processing 109/1024 atomic regions from SNP 32508 to 33109 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,660 DEBUG Processing 155/902 atomic regions from SNP 46230 to 46830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,743 DEBUG Processing 163/859 atomic regions from SNP 48657 to 49257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,747 DEBUG Processing 88/1135 atomic regions from SNP 26172 to 26772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,807 DEBUG Processing 111/474 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,885 DEBUG Processing 110/1024 atomic regions from SNP 32809 to 33410 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,903 DEBUG Processing 156/902 atomic regions from SNP 46530 to 47130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,001 DEBUG Processing 164/859 atomic regions from SNP 48957 to 49557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,022 DEBUG Processing 89/1135 atomic regions from SNP 26472 to 27072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,028 DEBUG Processing 112/474 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,131 DEBUG Processing 111/1024 atomic regions from SNP 33110 to 33711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,133 DEBUG Processing 157/902 atomic regions from SNP 46830 to 47430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,255 DEBUG Processing 113/474 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,263 DEBUG Processing 165/859 atomic regions from SNP 49257 to 49857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,297 DEBUG Processing 90/1135 atomic regions from SNP 26772 to 27372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,376 DEBUG Processing 158/902 atomic regions from SNP 47130 to 47730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,380 DEBUG Processing 112/1024 atomic regions from SNP 33411 to 34012 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,478 DEBUG Processing 114/474 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,515 DEBUG Processing 166/859 atomic regions from SNP 49557 to 50157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,564 DEBUG Processing 91/1135 atomic regions from SNP 27072 to 27672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,607 DEBUG Processing 159/902 atomic regions from SNP 47430 to 48030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,625 DEBUG Processing 113/1024 atomic regions from SNP 33712 to 34313 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,695 DEBUG Processing 115/474 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,778 DEBUG Processing 167/859 atomic regions from SNP 49857 to 50457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,840 DEBUG Processing 92/1135 atomic regions from SNP 27372 to 27972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,847 DEBUG Processing 160/902 atomic regions from SNP 47730 to 48330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,881 DEBUG Processing 114/1024 atomic regions from SNP 34013 to 34614 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,918 DEBUG Processing 116/474 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,038 DEBUG Processing 168/859 atomic regions from SNP 50157 to 50757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,084 DEBUG Processing 161/902 atomic regions from SNP 48030 to 48630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,104 DEBUG Processing 93/1135 atomic regions from SNP 27672 to 28272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,132 DEBUG Processing 117/474 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,134 DEBUG Processing 115/1024 atomic regions from SNP 34314 to 34915 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,298 DEBUG Processing 169/859 atomic regions from SNP 50457 to 51057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,324 DEBUG Processing 162/902 atomic regions from SNP 48330 to 48930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,358 DEBUG Processing 118/474 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,368 DEBUG Processing 94/1135 atomic regions from SNP 27972 to 28572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,390 DEBUG Processing 116/1024 atomic regions from SNP 34615 to 35216 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,541 DEBUG Processing 170/859 atomic regions from SNP 50757 to 51357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,561 DEBUG Processing 163/902 atomic regions from SNP 48630 to 49230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,586 DEBUG Processing 119/474 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,642 DEBUG Processing 95/1135 atomic regions from SNP 28272 to 28872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,655 DEBUG Processing 117/1024 atomic regions from SNP 34916 to 35517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,774 DEBUG Processing 171/859 atomic regions from SNP 51057 to 51657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,801 DEBUG Processing 164/902 atomic regions from SNP 48930 to 49530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,817 DEBUG Processing 120/474 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,917 DEBUG Processing 96/1135 atomic regions from SNP 28572 to 29172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,919 DEBUG Processing 118/1024 atomic regions from SNP 35217 to 35818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,998 DEBUG Processing 172/859 atomic regions from SNP 51357 to 51957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,032 DEBUG Processing 165/902 atomic regions from SNP 49230 to 49830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,039 DEBUG Processing 121/474 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,181 DEBUG Processing 119/1024 atomic regions from SNP 35518 to 36119 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,187 DEBUG Processing 97/1135 atomic regions from SNP 28872 to 29472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,247 DEBUG Processing 173/859 atomic regions from SNP 51657 to 52257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,259 DEBUG Processing 122/474 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,269 DEBUG Processing 166/902 atomic regions from SNP 49530 to 50130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,442 DEBUG Processing 120/1024 atomic regions from SNP 35819 to 36420 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,459 DEBUG Processing 98/1135 atomic regions from SNP 29172 to 29772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,484 DEBUG Processing 123/474 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,499 DEBUG Processing 174/859 atomic regions from SNP 51957 to 52557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,513 DEBUG Processing 167/902 atomic regions from SNP 49830 to 50430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,705 DEBUG Processing 121/1024 atomic regions from SNP 36120 to 36721 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,715 DEBUG Processing 124/474 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,735 DEBUG Processing 99/1135 atomic regions from SNP 29472 to 30072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,754 DEBUG Processing 168/902 atomic regions from SNP 50130 to 50730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,771 DEBUG Processing 175/859 atomic regions from SNP 52257 to 52857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,939 DEBUG Processing 125/474 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,962 DEBUG Processing 122/1024 atomic regions from SNP 36421 to 37022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,993 DEBUG Processing 169/902 atomic regions from SNP 50430 to 51030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,009 DEBUG Processing 100/1135 atomic regions from SNP 29772 to 30372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,022 DEBUG Processing 176/859 atomic regions from SNP 52557 to 53157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,162 DEBUG Processing 126/474 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,217 DEBUG Processing 123/1024 atomic regions from SNP 36722 to 37323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,232 DEBUG Processing 170/902 atomic regions from SNP 50730 to 51330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,283 DEBUG Processing 101/1135 atomic regions from SNP 30072 to 30672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,285 DEBUG Processing 177/859 atomic regions from SNP 52857 to 53457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,374 DEBUG Processing 127/474 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,466 DEBUG Processing 171/902 atomic regions from SNP 51030 to 51630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,473 DEBUG Processing 124/1024 atomic regions from SNP 37023 to 37624 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,551 DEBUG Processing 178/859 atomic regions from SNP 53157 to 53757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,558 DEBUG Processing 102/1135 atomic regions from SNP 30372 to 30972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,591 DEBUG Processing 128/474 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,694 DEBUG Processing 172/902 atomic regions from SNP 51330 to 51930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,728 DEBUG Processing 125/1024 atomic regions from SNP 37324 to 37925 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,798 DEBUG Processing 179/859 atomic regions from SNP 53457 to 54057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,814 DEBUG Processing 129/474 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,831 DEBUG Processing 103/1135 atomic regions from SNP 30672 to 31272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,921 DEBUG Processing 173/902 atomic regions from SNP 51630 to 52230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,986 DEBUG Processing 126/1024 atomic regions from SNP 37625 to 38226 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,038 DEBUG Processing 130/474 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,043 DEBUG Processing 180/859 atomic regions from SNP 53757 to 54357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,100 DEBUG Processing 104/1135 atomic regions from SNP 30972 to 31572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,156 DEBUG Processing 174/902 atomic regions from SNP 51930 to 52530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,246 DEBUG Processing 127/1024 atomic regions from SNP 37926 to 38527 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,255 DEBUG Processing 131/474 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,288 DEBUG Processing 181/859 atomic regions from SNP 54057 to 54657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,364 DEBUG Processing 105/1135 atomic regions from SNP 31272 to 31872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,394 DEBUG Processing 175/902 atomic regions from SNP 52230 to 52830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,471 DEBUG Processing 132/474 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,519 DEBUG Processing 128/1024 atomic regions from SNP 38227 to 38828 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,528 DEBUG Processing 182/859 atomic regions from SNP 54357 to 54957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,625 DEBUG Processing 106/1135 atomic regions from SNP 31572 to 32172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,631 DEBUG Processing 176/902 atomic regions from SNP 52530 to 53130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,690 DEBUG Processing 133/474 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,755 DEBUG Processing 183/859 atomic regions from SNP 54657 to 55257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,809 DEBUG Processing 129/1024 atomic regions from SNP 38528 to 39129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,868 DEBUG Processing 177/902 atomic regions from SNP 52830 to 53430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,889 DEBUG Processing 107/1135 atomic regions from SNP 31872 to 32472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,916 DEBUG Processing 134/474 atomic regions from SNP 40033 to 40634 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,985 DEBUG Processing 184/859 atomic regions from SNP 54957 to 55557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,099 DEBUG Processing 178/902 atomic regions from SNP 53130 to 53730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,104 DEBUG Processing 130/1024 atomic regions from SNP 38829 to 39430 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,144 DEBUG Processing 135/474 atomic regions from SNP 40334 to 40935 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,151 DEBUG Processing 108/1135 atomic regions from SNP 32172 to 32772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,212 DEBUG Processing 185/859 atomic regions from SNP 55257 to 55857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,330 DEBUG Processing 179/902 atomic regions from SNP 53430 to 54030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,364 DEBUG Processing 136/474 atomic regions from SNP 40635 to 41236 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,393 DEBUG Processing 131/1024 atomic regions from SNP 39130 to 39731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,416 DEBUG Processing 109/1135 atomic regions from SNP 32472 to 33072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,445 DEBUG Processing 186/859 atomic regions from SNP 55557 to 56157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,561 DEBUG Processing 180/902 atomic regions from SNP 53730 to 54330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,582 DEBUG Processing 137/474 atomic regions from SNP 40936 to 41537 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,683 DEBUG Processing 110/1135 atomic regions from SNP 32772 to 33372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,686 DEBUG Processing 132/1024 atomic regions from SNP 39431 to 40032 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,710 DEBUG Processing 187/859 atomic regions from SNP 55857 to 56457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,795 DEBUG Processing 181/902 atomic regions from SNP 54030 to 54630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,803 DEBUG Processing 138/474 atomic regions from SNP 41237 to 41838 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,955 DEBUG Processing 111/1135 atomic regions from SNP 33072 to 33672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,973 DEBUG Processing 133/1024 atomic regions from SNP 39732 to 40333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,983 DEBUG Processing 188/859 atomic regions from SNP 56157 to 56757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,034 DEBUG Processing 139/474 atomic regions from SNP 41538 to 42139 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,039 DEBUG Processing 182/902 atomic regions from SNP 54330 to 54930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,225 DEBUG Processing 112/1135 atomic regions from SNP 33372 to 33972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,240 DEBUG Processing 134/1024 atomic regions from SNP 40033 to 40634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,248 DEBUG Processing 189/859 atomic regions from SNP 56457 to 57057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,261 DEBUG Processing 140/474 atomic regions from SNP 41839 to 42440 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,279 DEBUG Processing 183/902 atomic regions from SNP 54630 to 55230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,482 DEBUG Processing 141/474 atomic regions from SNP 42140 to 42741 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,484 DEBUG Processing 190/859 atomic regions from SNP 56757 to 57357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,497 DEBUG Processing 113/1135 atomic regions from SNP 33672 to 34272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,513 DEBUG Processing 184/902 atomic regions from SNP 54930 to 55530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,526 DEBUG Processing 135/1024 atomic regions from SNP 40334 to 40935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,698 DEBUG Processing 142/474 atomic regions from SNP 42441 to 43042 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,718 DEBUG Processing 191/859 atomic regions from SNP 57057 to 57657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,743 DEBUG Processing 185/902 atomic regions from SNP 55230 to 55830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,764 DEBUG Processing 114/1135 atomic regions from SNP 33972 to 34572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,823 DEBUG Processing 136/1024 atomic regions from SNP 40635 to 41236 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,922 DEBUG Processing 143/474 atomic regions from SNP 42742 to 43343 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,947 DEBUG Processing 192/859 atomic regions from SNP 57357 to 57957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,974 DEBUG Processing 186/902 atomic regions from SNP 55530 to 56130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,027 DEBUG Processing 115/1135 atomic regions from SNP 34272 to 34872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,107 DEBUG Processing 137/1024 atomic regions from SNP 40936 to 41537 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,151 DEBUG Processing 144/474 atomic regions from SNP 43043 to 43644 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,190 DEBUG Processing 193/859 atomic regions from SNP 57657 to 58257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,210 DEBUG Processing 187/902 atomic regions from SNP 55830 to 56430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,293 DEBUG Processing 116/1135 atomic regions from SNP 34572 to 35172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,379 DEBUG Processing 145/474 atomic regions from SNP 43344 to 43945 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,402 DEBUG Processing 138/1024 atomic regions from SNP 41237 to 41838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,429 DEBUG Processing 194/859 atomic regions from SNP 57957 to 58557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,449 DEBUG Processing 188/902 atomic regions from SNP 56130 to 56730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,555 DEBUG Processing 117/1135 atomic regions from SNP 34872 to 35472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,599 DEBUG Processing 146/474 atomic regions from SNP 43645 to 44246 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,667 DEBUG Processing 195/859 atomic regions from SNP 58257 to 58857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,687 DEBUG Processing 189/902 atomic regions from SNP 56430 to 57030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,697 DEBUG Processing 139/1024 atomic regions from SNP 41538 to 42139 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,813 DEBUG Processing 118/1135 atomic regions from SNP 35172 to 35772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,818 DEBUG Processing 147/474 atomic regions from SNP 43946 to 44547 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,910 DEBUG Processing 196/859 atomic regions from SNP 58557 to 59157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,923 DEBUG Processing 190/902 atomic regions from SNP 56730 to 57330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,972 DEBUG Processing 140/1024 atomic regions from SNP 41839 to 42440 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,035 DEBUG Processing 148/474 atomic regions from SNP 44247 to 44848 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,075 DEBUG Processing 119/1135 atomic regions from SNP 35472 to 36072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,143 DEBUG Processing 197/859 atomic regions from SNP 58857 to 59457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,155 DEBUG Processing 191/902 atomic regions from SNP 57030 to 57630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,252 DEBUG Processing 149/474 atomic regions from SNP 44548 to 45149 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,264 DEBUG Processing 141/1024 atomic regions from SNP 42140 to 42741 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,342 DEBUG Processing 120/1135 atomic regions from SNP 35772 to 36372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,372 DEBUG Processing 198/859 atomic regions from SNP 59157 to 59757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,387 DEBUG Processing 192/902 atomic regions from SNP 57330 to 57930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,469 DEBUG Processing 150/474 atomic regions from SNP 44849 to 45450 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,538 DEBUG Processing 142/1024 atomic regions from SNP 42441 to 43042 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,609 DEBUG Processing 121/1135 atomic regions from SNP 36072 to 36672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,621 DEBUG Processing 193/902 atomic regions from SNP 57630 to 58230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,622 DEBUG Processing 199/859 atomic regions from SNP 59457 to 60057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,690 DEBUG Processing 151/474 atomic regions from SNP 45150 to 45751 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,807 DEBUG Processing 143/1024 atomic regions from SNP 42742 to 43343 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,856 DEBUG Processing 194/902 atomic regions from SNP 57930 to 58530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,875 DEBUG Processing 200/859 atomic regions from SNP 59757 to 60357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,879 DEBUG Processing 122/1135 atomic regions from SNP 36372 to 36972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,918 DEBUG Processing 152/474 atomic regions from SNP 45451 to 46052 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,087 DEBUG Processing 195/902 atomic regions from SNP 58230 to 58830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,103 DEBUG Processing 144/1024 atomic regions from SNP 43043 to 43644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,118 DEBUG Processing 201/859 atomic regions from SNP 60057 to 60657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,141 DEBUG Processing 153/474 atomic regions from SNP 45752 to 46353 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,153 DEBUG Processing 123/1135 atomic regions from SNP 36672 to 37272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,310 DEBUG Processing 196/902 atomic regions from SNP 58530 to 59130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,355 DEBUG Processing 202/859 atomic regions from SNP 60357 to 60957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,356 DEBUG Processing 154/474 atomic regions from SNP 46053 to 46654 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,390 DEBUG Processing 145/1024 atomic regions from SNP 43344 to 43945 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,427 DEBUG Processing 124/1135 atomic regions from SNP 36972 to 37572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,538 DEBUG Processing 197/902 atomic regions from SNP 58830 to 59430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,570 DEBUG Processing 155/474 atomic regions from SNP 46354 to 46955 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,590 DEBUG Processing 203/859 atomic regions from SNP 60657 to 61257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,679 DEBUG Processing 146/1024 atomic regions from SNP 43645 to 44246 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,705 DEBUG Processing 125/1135 atomic regions from SNP 37272 to 37872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,772 DEBUG Processing 198/902 atomic regions from SNP 59130 to 59730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,786 DEBUG Processing 156/474 atomic regions from SNP 46655 to 47256 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,820 DEBUG Processing 204/859 atomic regions from SNP 60957 to 61557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,962 DEBUG Processing 147/1024 atomic regions from SNP 43946 to 44547 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,974 DEBUG Processing 126/1135 atomic regions from SNP 37572 to 38172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,009 DEBUG Processing 199/902 atomic regions from SNP 59430 to 60030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,011 DEBUG Processing 157/474 atomic regions from SNP 46956 to 47557 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,049 DEBUG Processing 205/859 atomic regions from SNP 61257 to 61857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,233 DEBUG Processing 158/474 atomic regions from SNP 47257 to 47858 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,237 DEBUG Processing 127/1135 atomic regions from SNP 37872 to 38472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,243 DEBUG Processing 200/902 atomic regions from SNP 59730 to 60330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,249 DEBUG Processing 148/1024 atomic regions from SNP 44247 to 44848 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,281 DEBUG Processing 206/859 atomic regions from SNP 61557 to 62157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,453 DEBUG Processing 159/474 atomic regions from SNP 47558 to 48159 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,474 DEBUG Processing 201/902 atomic regions from SNP 60030 to 60630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,500 DEBUG Processing 128/1135 atomic regions from SNP 38172 to 38772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,516 DEBUG Processing 207/859 atomic regions from SNP 61857 to 62457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,522 DEBUG Processing 149/1024 atomic regions from SNP 44548 to 45149 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,666 DEBUG Processing 160/474 atomic regions from SNP 47859 to 48460 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,696 DEBUG Processing 202/902 atomic regions from SNP 60330 to 60930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,744 DEBUG Processing 208/859 atomic regions from SNP 62157 to 62757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,757 DEBUG Processing 129/1135 atomic regions from SNP 38472 to 39072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,788 DEBUG Processing 150/1024 atomic regions from SNP 44849 to 45450 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,889 DEBUG Processing 161/474 atomic regions from SNP 48160 to 48761 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,922 DEBUG Processing 203/902 atomic regions from SNP 60630 to 61230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,972 DEBUG Processing 209/859 atomic regions from SNP 62457 to 63057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,024 DEBUG Processing 130/1135 atomic regions from SNP 38772 to 39372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,086 DEBUG Processing 151/1024 atomic regions from SNP 45150 to 45751 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,128 DEBUG Processing 162/474 atomic regions from SNP 48461 to 49062 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,165 DEBUG Processing 204/902 atomic regions from SNP 60930 to 61530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,203 DEBUG Processing 210/859 atomic regions from SNP 62757 to 63357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,288 DEBUG Processing 131/1135 atomic regions from SNP 39072 to 39672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,360 DEBUG Processing 163/474 atomic regions from SNP 48762 to 49363 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,386 DEBUG Processing 152/1024 atomic regions from SNP 45451 to 46052 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,410 DEBUG Processing 205/902 atomic regions from SNP 61230 to 61830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,432 DEBUG Processing 211/859 atomic regions from SNP 63057 to 63657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,552 DEBUG Processing 132/1135 atomic regions from SNP 39372 to 39972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,592 DEBUG Processing 164/474 atomic regions from SNP 49063 to 49664 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,654 DEBUG Processing 206/902 atomic regions from SNP 61530 to 62130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,663 DEBUG Processing 212/859 atomic regions from SNP 63357 to 63957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,675 DEBUG Processing 153/1024 atomic regions from SNP 45752 to 46353 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,813 DEBUG Processing 165/474 atomic regions from SNP 49364 to 49965 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,817 DEBUG Processing 133/1135 atomic regions from SNP 39672 to 40272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,893 DEBUG Processing 207/902 atomic regions from SNP 61830 to 62430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,897 DEBUG Processing 213/859 atomic regions from SNP 63657 to 64257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,947 DEBUG Processing 154/1024 atomic regions from SNP 46053 to 46654 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,032 DEBUG Processing 166/474 atomic regions from SNP 49665 to 50266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,088 DEBUG Processing 134/1135 atomic regions from SNP 39972 to 40572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,125 DEBUG Processing 208/902 atomic regions from SNP 62130 to 62730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,131 DEBUG Processing 214/859 atomic regions from SNP 63957 to 64557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,205 DEBUG Processing 155/1024 atomic regions from SNP 46354 to 46955 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,255 DEBUG Processing 167/474 atomic regions from SNP 49966 to 50567 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,364 DEBUG Processing 135/1135 atomic regions from SNP 40272 to 40872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,367 DEBUG Processing 209/902 atomic regions from SNP 62430 to 63030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,374 DEBUG Processing 215/859 atomic regions from SNP 64257 to 64857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,465 DEBUG Processing 156/1024 atomic regions from SNP 46655 to 47256 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,476 DEBUG Processing 168/474 atomic regions from SNP 50267 to 50868 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,611 DEBUG Processing 210/902 atomic regions from SNP 62730 to 63330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,618 DEBUG Processing 216/859 atomic regions from SNP 64557 to 65157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,644 DEBUG Processing 136/1135 atomic regions from SNP 40572 to 41172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,700 DEBUG Processing 169/474 atomic regions from SNP 50568 to 51169 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,730 DEBUG Processing 157/1024 atomic regions from SNP 46956 to 47557 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,856 DEBUG Processing 217/859 atomic regions from SNP 64857 to 65457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,857 DEBUG Processing 211/902 atomic regions from SNP 63030 to 63630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,915 DEBUG Processing 137/1135 atomic regions from SNP 40872 to 41472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,918 DEBUG Processing 170/474 atomic regions from SNP 50869 to 51470 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,006 DEBUG Processing 158/1024 atomic regions from SNP 47257 to 47858 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,089 DEBUG Processing 218/859 atomic regions from SNP 65157 to 65757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,101 DEBUG Processing 212/902 atomic regions from SNP 63330 to 63930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,144 DEBUG Processing 171/474 atomic regions from SNP 51170 to 51771 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,181 DEBUG Processing 138/1135 atomic regions from SNP 41172 to 41772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,243 DEBUG Segmenting atomic regions: 2025-01-31 09:44:34,286 DEBUG Processing 159/1024 atomic regions from SNP 47558 to 48159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,320 DEBUG Processing 219/859 atomic regions from SNP 65457 to 66057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,338 DEBUG Processing 213/902 atomic regions from SNP 63630 to 64230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,356 DEBUG Processing 1/649 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,374 DEBUG Processing 172/474 atomic regions from SNP 51471 to 52072 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,448 DEBUG Processing 139/1135 atomic regions from SNP 41472 to 42072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,554 DEBUG Processing 220/859 atomic regions from SNP 65757 to 66357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,577 DEBUG Processing 160/1024 atomic regions from SNP 47859 to 48460 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,581 DEBUG Processing 214/902 atomic regions from SNP 63930 to 64530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,606 DEBUG Processing 173/474 atomic regions from SNP 51772 to 52373 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,620 DEBUG Processing 2/649 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,717 DEBUG Processing 140/1135 atomic regions from SNP 41772 to 42372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,789 DEBUG Processing 221/859 atomic regions from SNP 66057 to 66657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,821 DEBUG Processing 215/902 atomic regions from SNP 64230 to 64830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,835 DEBUG Processing 174/474 atomic regions from SNP 52073 to 52674 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,872 DEBUG Processing 3/649 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,874 DEBUG Processing 161/1024 atomic regions from SNP 48160 to 48761 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,984 DEBUG Processing 141/1135 atomic regions from SNP 42072 to 42672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,020 DEBUG Processing 222/859 atomic regions from SNP 66357 to 66957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,060 DEBUG Processing 216/902 atomic regions from SNP 64530 to 65130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,061 DEBUG Processing 175/474 atomic regions from SNP 52374 to 52975 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:35,105 DEBUG Processing 4/649 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,162 DEBUG Processing 162/1024 atomic regions from SNP 48461 to 49062 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,252 DEBUG Processing 223/859 atomic regions from SNP 66657 to 67257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,254 DEBUG Processing 142/1135 atomic regions from SNP 42372 to 42972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,288 DEBUG Processing 176/474 atomic regions from SNP 52675 to 53276 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:35,302 DEBUG Processing 217/902 atomic regions from SNP 64830 to 65430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,369 DEBUG Processing 5/649 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,454 DEBUG Processing 163/1024 atomic regions from SNP 48762 to 49363 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,488 DEBUG Processing 224/859 atomic regions from SNP 66957 to 67557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,517 DEBUG Processing 177/474 atomic regions from SNP 52976 to 53577 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:35,523 DEBUG Processing 143/1135 atomic regions from SNP 42672 to 43272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,545 DEBUG Processing 218/902 atomic regions from SNP 65130 to 65730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,633 DEBUG Processing 6/649 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,725 DEBUG Processing 225/859 atomic regions from SNP 67257 to 67857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,735 DEBUG Processing 164/1024 atomic regions from SNP 49063 to 49664 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,745 DEBUG Processing 178/474 atomic regions from SNP 53277 to 53878 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:35,788 DEBUG Processing 219/902 atomic regions from SNP 65430 to 66030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,793 DEBUG Processing 144/1135 atomic regions from SNP 42972 to 43572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,875 DEBUG Processing 7/649 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,967 DEBUG Processing 226/859 atomic regions from SNP 67557 to 68157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,974 DEBUG Processing 179/474 atomic regions from SNP 53578 to 54179 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:36,028 DEBUG Processing 165/1024 atomic regions from SNP 49364 to 49965 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,031 DEBUG Processing 220/902 atomic regions from SNP 65730 to 66330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,061 DEBUG Processing 145/1135 atomic regions from SNP 43272 to 43872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,127 DEBUG Processing 8/649 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,197 DEBUG Processing 180/474 atomic regions from SNP 53879 to 54480 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:36,197 DEBUG Processing 227/859 atomic regions from SNP 67857 to 68457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,268 DEBUG Processing 221/902 atomic regions from SNP 66030 to 66630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,320 DEBUG Processing 166/1024 atomic regions from SNP 49665 to 50266 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,326 DEBUG Processing 146/1135 atomic regions from SNP 43572 to 44172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,385 DEBUG Processing 9/649 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,422 DEBUG Processing 181/474 atomic regions from SNP 54180 to 54781 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:36,427 DEBUG Processing 228/859 atomic regions from SNP 68157 to 68757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,506 DEBUG Processing 222/902 atomic regions from SNP 66330 to 66930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,595 DEBUG Processing 147/1135 atomic regions from SNP 43872 to 44472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,611 DEBUG Processing 167/1024 atomic regions from SNP 49966 to 50567 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,630 DEBUG Processing 10/649 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,645 DEBUG Processing 182/474 atomic regions from SNP 54481 to 55082 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:36,661 DEBUG Processing 229/859 atomic regions from SNP 68457 to 69057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,745 DEBUG Processing 223/902 atomic regions from SNP 66630 to 67230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,859 DEBUG Processing 11/649 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,870 DEBUG Processing 148/1135 atomic regions from SNP 44172 to 44772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,870 DEBUG Processing 183/474 atomic regions from SNP 54782 to 55383 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:36,900 DEBUG Processing 168/1024 atomic regions from SNP 50267 to 50868 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,901 DEBUG Processing 230/859 atomic regions from SNP 68757 to 69357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,986 DEBUG Processing 224/902 atomic regions from SNP 66930 to 67530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,088 DEBUG Processing 12/649 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,093 DEBUG Processing 184/474 atomic regions from SNP 55083 to 55684 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:37,142 DEBUG Processing 231/859 atomic regions from SNP 69057 to 69657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,145 DEBUG Processing 149/1135 atomic regions from SNP 44472 to 45072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,176 DEBUG Processing 169/1024 atomic regions from SNP 50568 to 51169 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,224 DEBUG Processing 225/902 atomic regions from SNP 67230 to 67830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,317 DEBUG Processing 185/474 atomic regions from SNP 55384 to 55985 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:37,319 DEBUG Processing 13/649 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,389 DEBUG Processing 232/859 atomic regions from SNP 69357 to 69957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,421 DEBUG Processing 150/1135 atomic regions from SNP 44772 to 45372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,452 DEBUG Processing 170/1024 atomic regions from SNP 50869 to 51470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,463 DEBUG Processing 226/902 atomic regions from SNP 67530 to 68130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,547 DEBUG Processing 186/474 atomic regions from SNP 55685 to 56286 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:37,574 DEBUG Processing 14/649 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,628 DEBUG Processing 233/859 atomic regions from SNP 69657 to 70257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,694 DEBUG Processing 151/1135 atomic regions from SNP 45072 to 45672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,697 DEBUG Processing 227/902 atomic regions from SNP 67830 to 68430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,744 DEBUG Processing 171/1024 atomic regions from SNP 51170 to 51771 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,774 DEBUG Processing 187/474 atomic regions from SNP 55986 to 56587 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:37,842 DEBUG Processing 15/649 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,866 DEBUG Processing 234/859 atomic regions from SNP 69957 to 70557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,937 DEBUG Processing 228/902 atomic regions from SNP 68130 to 68730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,970 DEBUG Processing 152/1135 atomic regions from SNP 45372 to 45972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,001 DEBUG Processing 188/474 atomic regions from SNP 56287 to 56888 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:38,023 DEBUG Processing 172/1024 atomic regions from SNP 51471 to 52072 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,092 DEBUG Processing 16/649 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,105 DEBUG Processing 235/859 atomic regions from SNP 70257 to 70857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,182 DEBUG Processing 229/902 atomic regions from SNP 68430 to 69030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,225 DEBUG Processing 189/474 atomic regions from SNP 56588 to 57189 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:38,239 DEBUG Processing 153/1135 atomic regions from SNP 45672 to 46272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,289 DEBUG Processing 173/1024 atomic regions from SNP 51772 to 52373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,339 DEBUG Processing 17/649 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,341 DEBUG Processing 236/859 atomic regions from SNP 70557 to 71157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,426 DEBUG Processing 230/902 atomic regions from SNP 68730 to 69330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,455 DEBUG Processing 190/474 atomic regions from SNP 56889 to 57490 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:38,513 DEBUG Processing 154/1135 atomic regions from SNP 45972 to 46572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,581 DEBUG Processing 237/859 atomic regions from SNP 70857 to 71457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,583 DEBUG Processing 174/1024 atomic regions from SNP 52073 to 52673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,583 DEBUG Processing 18/649 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,673 DEBUG Processing 231/902 atomic regions from SNP 69030 to 69630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,689 DEBUG Processing 191/474 atomic regions from SNP 57190 to 57791 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:38,780 DEBUG Processing 155/1135 atomic regions from SNP 46272 to 46872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,820 DEBUG Processing 238/859 atomic regions from SNP 71157 to 71757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,835 DEBUG Processing 19/649 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,889 DEBUG Processing 175/1024 atomic regions from SNP 52373 to 52973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,919 DEBUG Processing 232/902 atomic regions from SNP 69330 to 69930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,928 DEBUG Processing 192/474 atomic regions from SNP 57491 to 58092 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:39,042 DEBUG Processing 156/1135 atomic regions from SNP 46572 to 47172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,052 DEBUG Processing 239/859 atomic regions from SNP 71457 to 72057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,082 DEBUG Processing 20/649 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,159 DEBUG Processing 233/902 atomic regions from SNP 69630 to 70230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,170 DEBUG Processing 193/474 atomic regions from SNP 57792 to 58393 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:39,189 DEBUG Processing 176/1024 atomic regions from SNP 52673 to 53273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,281 DEBUG Processing 240/859 atomic regions from SNP 71757 to 72357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,306 DEBUG Processing 157/1135 atomic regions from SNP 46872 to 47472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,333 DEBUG Processing 21/649 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,400 DEBUG Processing 234/902 atomic regions from SNP 69930 to 70530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,424 DEBUG Processing 194/474 atomic regions from SNP 58093 to 58694 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:39,483 DEBUG Processing 177/1024 atomic regions from SNP 52973 to 53573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,509 DEBUG Processing 241/859 atomic regions from SNP 72057 to 72657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,572 DEBUG Processing 158/1135 atomic regions from SNP 47172 to 47772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,574 DEBUG Processing 22/649 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,643 DEBUG Processing 235/902 atomic regions from SNP 70230 to 70830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,664 DEBUG Processing 195/474 atomic regions from SNP 58394 to 58995 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:39,743 DEBUG Processing 242/859 atomic regions from SNP 72357 to 72957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,783 DEBUG Processing 178/1024 atomic regions from SNP 53273 to 53873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,832 DEBUG Processing 23/649 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,845 DEBUG Processing 159/1135 atomic regions from SNP 47472 to 48072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,885 DEBUG Processing 236/902 atomic regions from SNP 70530 to 71130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,892 DEBUG Processing 196/474 atomic regions from SNP 58695 to 59296 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:39,973 DEBUG Processing 243/859 atomic regions from SNP 72657 to 73257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,088 DEBUG Processing 179/1024 atomic regions from SNP 53573 to 54173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,101 DEBUG Processing 24/649 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,132 DEBUG Processing 197/474 atomic regions from SNP 58996 to 59597 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:40,134 DEBUG Processing 237/902 atomic regions from SNP 70830 to 71430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,154 DEBUG Processing 160/1135 atomic regions from SNP 47772 to 48372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,203 DEBUG Processing 244/859 atomic regions from SNP 72957 to 73557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,355 DEBUG Processing 25/649 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,367 DEBUG Processing 198/474 atomic regions from SNP 59297 to 59898 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:40,372 DEBUG Processing 180/1024 atomic regions from SNP 53873 to 54473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,378 DEBUG Processing 238/902 atomic regions from SNP 71130 to 71730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,432 DEBUG Processing 161/1135 atomic regions from SNP 48072 to 48672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,437 DEBUG Processing 245/859 atomic regions from SNP 73257 to 73857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,604 DEBUG Processing 199/474 atomic regions from SNP 59598 to 60199 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:40,609 DEBUG Processing 26/649 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,622 DEBUG Processing 239/902 atomic regions from SNP 71430 to 72030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,653 DEBUG Processing 181/1024 atomic regions from SNP 54173 to 54773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,679 DEBUG Processing 246/859 atomic regions from SNP 73557 to 74157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,711 DEBUG Processing 162/1135 atomic regions from SNP 48372 to 48972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,831 DEBUG Processing 200/474 atomic regions from SNP 59899 to 60500 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:40,857 DEBUG Processing 27/649 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,868 DEBUG Processing 240/902 atomic regions from SNP 71730 to 72330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,924 DEBUG Processing 247/859 atomic regions from SNP 73857 to 74457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,927 DEBUG Processing 182/1024 atomic regions from SNP 54473 to 55073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,985 DEBUG Processing 163/1135 atomic regions from SNP 48672 to 49272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,062 DEBUG Processing 201/474 atomic regions from SNP 60200 to 60801 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:41,096 DEBUG Processing 28/649 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,113 DEBUG Processing 241/902 atomic regions from SNP 72030 to 72630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,168 DEBUG Processing 248/859 atomic regions from SNP 74157 to 74757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,203 DEBUG Processing 183/1024 atomic regions from SNP 54773 to 55373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,255 DEBUG Processing 164/1135 atomic regions from SNP 48972 to 49572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,309 DEBUG Processing 202/474 atomic regions from SNP 60501 to 61102 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:41,336 DEBUG Processing 29/649 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,361 DEBUG Processing 242/902 atomic regions from SNP 72330 to 72930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,406 DEBUG Processing 249/859 atomic regions from SNP 74457 to 75057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,479 DEBUG Processing 184/1024 atomic regions from SNP 55073 to 55673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,523 DEBUG Processing 165/1135 atomic regions from SNP 49272 to 49872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,552 DEBUG Processing 203/474 atomic regions from SNP 60802 to 61403 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:41,569 DEBUG Processing 30/649 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,601 DEBUG Processing 243/902 atomic regions from SNP 72630 to 73230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,638 DEBUG Processing 250/859 atomic regions from SNP 74757 to 75357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,769 DEBUG Processing 185/1024 atomic regions from SNP 55373 to 55973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,790 DEBUG Processing 166/1135 atomic regions from SNP 49572 to 50172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,802 DEBUG Processing 31/649 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,811 DEBUG Processing 204/474 atomic regions from SNP 61103 to 61704 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:41,844 DEBUG Processing 244/902 atomic regions from SNP 72930 to 73530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,875 DEBUG Processing 251/859 atomic regions from SNP 75057 to 75657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,035 DEBUG Processing 186/1024 atomic regions from SNP 55673 to 56273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,036 DEBUG Processing 32/649 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,058 DEBUG Processing 167/1135 atomic regions from SNP 49872 to 50472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,065 DEBUG Processing 205/474 atomic regions from SNP 61404 to 62005 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:42,087 DEBUG Processing 245/902 atomic regions from SNP 73230 to 73830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,113 DEBUG Processing 252/859 atomic regions from SNP 75357 to 75957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,284 DEBUG Processing 33/649 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,296 DEBUG Processing 187/1024 atomic regions from SNP 55973 to 56573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,327 DEBUG Processing 206/474 atomic regions from SNP 61705 to 62306 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:42,330 DEBUG Processing 246/902 atomic regions from SNP 73530 to 74130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,330 DEBUG Processing 168/1135 atomic regions from SNP 50172 to 50772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,349 DEBUG Processing 253/859 atomic regions from SNP 75657 to 76257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,540 DEBUG Processing 34/649 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,560 DEBUG Processing 188/1024 atomic regions from SNP 56273 to 56873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,576 DEBUG Processing 247/902 atomic regions from SNP 73830 to 74430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,592 DEBUG Processing 254/859 atomic regions from SNP 75957 to 76557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,594 DEBUG Processing 207/474 atomic regions from SNP 62006 to 62607 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:42,608 DEBUG Processing 169/1135 atomic regions from SNP 50472 to 51072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,782 DEBUG Processing 35/649 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,834 DEBUG Processing 189/1024 atomic regions from SNP 56573 to 57173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,835 DEBUG Processing 248/902 atomic regions from SNP 74130 to 74730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,842 DEBUG Processing 255/859 atomic regions from SNP 76257 to 76857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,863 DEBUG Processing 208/474 atomic regions from SNP 62307 to 62908 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:42,896 DEBUG Processing 170/1135 atomic regions from SNP 50772 to 51372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,018 DEBUG Processing 36/649 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,077 DEBUG Processing 256/859 atomic regions from SNP 76557 to 77157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,079 DEBUG Processing 249/902 atomic regions from SNP 74430 to 75030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,117 DEBUG Processing 190/1024 atomic regions from SNP 56873 to 57473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,132 DEBUG Processing 209/474 atomic regions from SNP 62608 to 63209 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:43,173 DEBUG Processing 171/1135 atomic regions from SNP 51072 to 51672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,254 DEBUG Processing 37/649 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,308 DEBUG Processing 257/859 atomic regions from SNP 76857 to 77457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,319 DEBUG Processing 250/902 atomic regions from SNP 74730 to 75330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,381 DEBUG Processing 210/474 atomic regions from SNP 62909 to 63510 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:43,412 DEBUG Processing 191/1024 atomic regions from SNP 57173 to 57773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,448 DEBUG Processing 172/1135 atomic regions from SNP 51372 to 51972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,483 DEBUG Processing 38/649 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,540 DEBUG Processing 258/859 atomic regions from SNP 77157 to 77757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,558 DEBUG Processing 251/902 atomic regions from SNP 75030 to 75630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,611 DEBUG Processing 211/474 atomic regions from SNP 63210 to 63811 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:43,695 DEBUG Processing 192/1024 atomic regions from SNP 57473 to 58073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,716 DEBUG Processing 39/649 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,724 DEBUG Processing 173/1135 atomic regions from SNP 51672 to 52272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,774 DEBUG Processing 259/859 atomic regions from SNP 77457 to 78057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,797 DEBUG Processing 252/902 atomic regions from SNP 75330 to 75930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,843 DEBUG Processing 212/474 atomic regions from SNP 63511 to 64112 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:43,947 DEBUG Processing 40/649 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,974 DEBUG Processing 193/1024 atomic regions from SNP 57773 to 58373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,997 DEBUG Processing 174/1135 atomic regions from SNP 51972 to 52572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,013 DEBUG Processing 260/859 atomic regions from SNP 77757 to 78357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,033 DEBUG Processing 253/902 atomic regions from SNP 75630 to 76230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,076 DEBUG Processing 213/474 atomic regions from SNP 63812 to 64413 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:44,181 DEBUG Processing 41/649 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,254 DEBUG Processing 261/859 atomic regions from SNP 78057 to 78657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,266 DEBUG Processing 194/1024 atomic regions from SNP 58073 to 58673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,267 DEBUG Processing 254/902 atomic regions from SNP 75930 to 76530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,277 DEBUG Processing 175/1135 atomic regions from SNP 52272 to 52872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,302 DEBUG Processing 214/474 atomic regions from SNP 64113 to 64714 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:44,417 DEBUG Processing 42/649 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,498 DEBUG Processing 262/859 atomic regions from SNP 78357 to 78957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,507 DEBUG Processing 255/902 atomic regions from SNP 76230 to 76830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,545 DEBUG Processing 215/474 atomic regions from SNP 64414 to 65015 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:44,555 DEBUG Processing 195/1024 atomic regions from SNP 58373 to 58973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,578 DEBUG Processing 176/1135 atomic regions from SNP 52572 to 53172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,658 DEBUG Processing 43/649 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,735 DEBUG Processing 263/859 atomic regions from SNP 78657 to 79257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,745 DEBUG Processing 256/902 atomic regions from SNP 76530 to 77130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,802 DEBUG Processing 216/474 atomic regions from SNP 64715 to 65316 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:44,827 DEBUG Processing 196/1024 atomic regions from SNP 58673 to 59273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,863 DEBUG Processing 177/1135 atomic regions from SNP 52872 to 53472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,895 DEBUG Processing 44/649 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,972 DEBUG Processing 264/859 atomic regions from SNP 78957 to 79557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,991 DEBUG Processing 257/902 atomic regions from SNP 76830 to 77430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,028 DEBUG Processing 217/474 atomic regions from SNP 65016 to 65617 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:45,084 DEBUG Processing 197/1024 atomic regions from SNP 58973 to 59573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,126 DEBUG Processing 45/649 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,130 DEBUG Processing 178/1135 atomic regions from SNP 53172 to 53772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,214 DEBUG Processing 265/859 atomic regions from SNP 79257 to 79857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,239 DEBUG Processing 258/902 atomic regions from SNP 77130 to 77730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,259 DEBUG Processing 218/474 atomic regions from SNP 65317 to 65918 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:45,346 DEBUG Processing 198/1024 atomic regions from SNP 59273 to 59873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,353 DEBUG Processing 46/649 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,398 DEBUG Processing 179/1135 atomic regions from SNP 53472 to 54072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,459 DEBUG Processing 266/859 atomic regions from SNP 79557 to 80157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,484 DEBUG Processing 259/902 atomic regions from SNP 77430 to 78030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,493 DEBUG Processing 219/474 atomic regions from SNP 65618 to 66219 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:45,586 DEBUG Processing 47/649 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,610 DEBUG Processing 199/1024 atomic regions from SNP 59573 to 60173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,684 DEBUG Processing 180/1135 atomic regions from SNP 53772 to 54372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,703 DEBUG Processing 267/859 atomic regions from SNP 79857 to 80457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,723 DEBUG Processing 260/902 atomic regions from SNP 77730 to 78330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,724 DEBUG Processing 220/474 atomic regions from SNP 65919 to 66520 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:45,824 DEBUG Processing 48/649 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,863 DEBUG Processing 200/1024 atomic regions from SNP 59873 to 60473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,947 DEBUG Processing 268/859 atomic regions from SNP 80157 to 80757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,950 DEBUG Processing 221/474 atomic regions from SNP 66220 to 66821 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:45,958 DEBUG Processing 261/902 atomic regions from SNP 78030 to 78630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,980 DEBUG Processing 181/1135 atomic regions from SNP 54072 to 54672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,061 DEBUG Processing 49/649 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,116 DEBUG Processing 201/1024 atomic regions from SNP 60173 to 60773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,182 DEBUG Processing 222/474 atomic regions from SNP 66521 to 67122 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:46,187 DEBUG Processing 269/859 atomic regions from SNP 80457 to 81057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,196 DEBUG Processing 262/902 atomic regions from SNP 78330 to 78930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,278 DEBUG Processing 182/1135 atomic regions from SNP 54372 to 54972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,296 DEBUG Processing 50/649 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,371 DEBUG Processing 202/1024 atomic regions from SNP 60473 to 61073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,416 DEBUG Processing 223/474 atomic regions from SNP 66822 to 67423 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:46,425 DEBUG Processing 270/859 atomic regions from SNP 80757 to 81357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,437 DEBUG Processing 263/902 atomic regions from SNP 78630 to 79230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,521 DEBUG Processing 51/649 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,582 DEBUG Processing 183/1135 atomic regions from SNP 54672 to 55272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,632 DEBUG Processing 203/1024 atomic regions from SNP 60773 to 61373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,654 DEBUG Processing 224/474 atomic regions from SNP 67123 to 67724 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:46,663 DEBUG Processing 271/859 atomic regions from SNP 81057 to 81657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,684 DEBUG Processing 264/902 atomic regions from SNP 78930 to 79530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,748 DEBUG Processing 52/649 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,853 DEBUG Processing 184/1135 atomic regions from SNP 54972 to 55572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,896 DEBUG Processing 204/1024 atomic regions from SNP 61073 to 61673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,905 DEBUG Processing 272/859 atomic regions from SNP 81357 to 81957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,910 DEBUG Processing 225/474 atomic regions from SNP 67424 to 68025 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:46,931 DEBUG Processing 265/902 atomic regions from SNP 79230 to 79830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,983 DEBUG Processing 53/649 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,121 DEBUG Processing 185/1135 atomic regions from SNP 55272 to 55872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,141 DEBUG Processing 226/474 atomic regions from SNP 67725 to 68326 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:47,150 DEBUG Processing 273/859 atomic regions from SNP 81657 to 82257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,167 DEBUG Processing 205/1024 atomic regions from SNP 61373 to 61973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,180 DEBUG Processing 266/902 atomic regions from SNP 79530 to 80130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,227 DEBUG Processing 54/649 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,371 DEBUG Processing 227/474 atomic regions from SNP 68026 to 68627 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:47,393 DEBUG Processing 186/1135 atomic regions from SNP 55572 to 56172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,394 DEBUG Processing 274/859 atomic regions from SNP 81957 to 82557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,422 DEBUG Processing 267/902 atomic regions from SNP 79830 to 80430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,457 DEBUG Processing 206/1024 atomic regions from SNP 61673 to 62273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,464 DEBUG Processing 55/649 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,603 DEBUG Processing 228/474 atomic regions from SNP 68327 to 68928 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:47,635 DEBUG Processing 275/859 atomic regions from SNP 82257 to 82857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,670 DEBUG Processing 187/1135 atomic regions from SNP 55872 to 56472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,672 DEBUG Processing 268/902 atomic regions from SNP 80130 to 80730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,704 DEBUG Processing 56/649 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,741 DEBUG Processing 207/1024 atomic regions from SNP 61973 to 62573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,832 DEBUG Processing 229/474 atomic regions from SNP 68628 to 69229 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:47,868 DEBUG Processing 276/859 atomic regions from SNP 82557 to 83157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,925 DEBUG Processing 269/902 atomic regions from SNP 80430 to 81030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,941 DEBUG Processing 57/649 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,947 DEBUG Processing 188/1135 atomic regions from SNP 56172 to 56772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,026 DEBUG Processing 208/1024 atomic regions from SNP 62273 to 62873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,064 DEBUG Processing 230/474 atomic regions from SNP 68929 to 69530 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:48,104 DEBUG Processing 277/859 atomic regions from SNP 82857 to 83457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,185 DEBUG Processing 58/649 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,207 DEBUG Processing 270/902 atomic regions from SNP 80730 to 81330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,232 DEBUG Processing 189/1135 atomic regions from SNP 56472 to 57072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,294 DEBUG Processing 231/474 atomic regions from SNP 69230 to 69831 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:48,320 DEBUG Processing 209/1024 atomic regions from SNP 62573 to 63173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,335 DEBUG Processing 278/859 atomic regions from SNP 83157 to 83757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,429 DEBUG Processing 59/649 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,487 DEBUG Processing 271/902 atomic regions from SNP 81030 to 81630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,530 DEBUG Processing 232/474 atomic regions from SNP 69531 to 70132 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:48,540 DEBUG Processing 190/1135 atomic regions from SNP 56772 to 57372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,571 DEBUG Processing 279/859 atomic regions from SNP 83457 to 84057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,588 DEBUG Processing 210/1024 atomic regions from SNP 62873 to 63473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,667 DEBUG Processing 60/649 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,771 DEBUG Processing 272/902 atomic regions from SNP 81330 to 81930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,780 DEBUG Processing 233/474 atomic regions from SNP 69832 to 70433 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:48,816 DEBUG Processing 280/859 atomic regions from SNP 83757 to 84357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,859 DEBUG Processing 191/1135 atomic regions from SNP 57072 to 57672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,867 DEBUG Processing 211/1024 atomic regions from SNP 63173 to 63773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,901 DEBUG Processing 61/649 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,022 DEBUG Processing 234/474 atomic regions from SNP 70133 to 70734 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:49,052 DEBUG Processing 273/902 atomic regions from SNP 81630 to 82230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,062 DEBUG Processing 281/859 atomic regions from SNP 84057 to 84657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,131 DEBUG Processing 62/649 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,135 DEBUG Processing 212/1024 atomic regions from SNP 63473 to 64073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,172 DEBUG Processing 192/1135 atomic regions from SNP 57372 to 57972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,260 DEBUG Processing 235/474 atomic regions from SNP 70434 to 71035 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:49,307 DEBUG Processing 282/859 atomic regions from SNP 84357 to 84957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,314 DEBUG Processing 274/902 atomic regions from SNP 81930 to 82530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,368 DEBUG Processing 63/649 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,408 DEBUG Processing 213/1024 atomic regions from SNP 63773 to 64373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,481 DEBUG Processing 193/1135 atomic regions from SNP 57672 to 58272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,491 DEBUG Processing 236/474 atomic regions from SNP 70735 to 71336 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:49,551 DEBUG Processing 283/859 atomic regions from SNP 84657 to 85257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,574 DEBUG Processing 275/902 atomic regions from SNP 82230 to 82830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,610 DEBUG Processing 64/649 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,697 DEBUG Processing 214/1024 atomic regions from SNP 64073 to 64673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,723 DEBUG Processing 237/474 atomic regions from SNP 71036 to 71637 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:49,790 DEBUG Processing 194/1135 atomic regions from SNP 57972 to 58572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,794 DEBUG Processing 284/859 atomic regions from SNP 84957 to 85557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,833 DEBUG Processing 276/902 atomic regions from SNP 82530 to 83130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,866 DEBUG Processing 65/649 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,953 DEBUG Processing 238/474 atomic regions from SNP 71337 to 71938 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:49,968 DEBUG Processing 215/1024 atomic regions from SNP 64373 to 64973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,045 DEBUG Processing 285/859 atomic regions from SNP 85257 to 85857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,089 DEBUG Processing 277/902 atomic regions from SNP 82830 to 83430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,099 DEBUG Processing 195/1135 atomic regions from SNP 58272 to 58872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,117 DEBUG Processing 66/649 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,193 DEBUG Processing 239/474 atomic regions from SNP 71638 to 72239 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:50,273 DEBUG Processing 216/1024 atomic regions from SNP 64673 to 65273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,297 DEBUG Processing 286/859 atomic regions from SNP 85557 to 86157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,335 DEBUG Processing 278/902 atomic regions from SNP 83130 to 83730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,356 DEBUG Processing 67/649 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,408 DEBUG Processing 196/1135 atomic regions from SNP 58572 to 59172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,423 DEBUG Processing 240/474 atomic regions from SNP 71939 to 72540 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:50,544 DEBUG Processing 287/859 atomic regions from SNP 85857 to 86457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,557 DEBUG Processing 217/1024 atomic regions from SNP 64973 to 65573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,583 DEBUG Processing 279/902 atomic regions from SNP 83430 to 84030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,599 DEBUG Processing 68/649 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,655 DEBUG Processing 241/474 atomic regions from SNP 72240 to 72841 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:50,683 DEBUG Processing 197/1135 atomic regions from SNP 58872 to 59472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,801 DEBUG Processing 288/859 atomic regions from SNP 86157 to 86757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,834 DEBUG Processing 218/1024 atomic regions from SNP 65273 to 65873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,836 DEBUG Processing 280/902 atomic regions from SNP 83730 to 84330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,847 DEBUG Processing 69/649 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,892 DEBUG Processing 242/474 atomic regions from SNP 72541 to 73142 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:50,969 DEBUG Processing 198/1135 atomic regions from SNP 59172 to 59772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,047 DEBUG Processing 289/859 atomic regions from SNP 86457 to 87057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,086 DEBUG Processing 281/902 atomic regions from SNP 84030 to 84630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,092 DEBUG Processing 70/649 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,103 DEBUG Processing 219/1024 atomic regions from SNP 65573 to 66173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,132 DEBUG Processing 243/474 atomic regions from SNP 72842 to 73443 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,259 DEBUG Processing 199/1135 atomic regions from SNP 59472 to 60072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,294 DEBUG Processing 290/859 atomic regions from SNP 86757 to 87357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,332 DEBUG Processing 282/902 atomic regions from SNP 84330 to 84930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,333 DEBUG Processing 71/649 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,369 DEBUG Processing 244/474 atomic regions from SNP 73143 to 73744 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,375 DEBUG Processing 220/1024 atomic regions from SNP 65873 to 66473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,542 DEBUG Processing 200/1135 atomic regions from SNP 59772 to 60372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,543 DEBUG Processing 291/859 atomic regions from SNP 87057 to 87657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,569 DEBUG Processing 72/649 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,576 DEBUG Processing 283/902 atomic regions from SNP 84630 to 85230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,604 DEBUG Processing 245/474 atomic regions from SNP 73444 to 74045 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,643 DEBUG Processing 221/1024 atomic regions from SNP 66173 to 66773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,794 DEBUG Processing 292/859 atomic regions from SNP 87357 to 87957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,810 DEBUG Processing 73/649 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,825 DEBUG Processing 284/902 atomic regions from SNP 84930 to 85530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,839 DEBUG Processing 246/474 atomic regions from SNP 73745 to 74346 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,839 DEBUG Processing 201/1135 atomic regions from SNP 60072 to 60672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,918 DEBUG Processing 222/1024 atomic regions from SNP 66473 to 67073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,051 DEBUG Processing 293/859 atomic regions from SNP 87657 to 88257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,064 DEBUG Processing 74/649 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,083 DEBUG Processing 247/474 atomic regions from SNP 74046 to 74647 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,083 DEBUG Processing 285/902 atomic regions from SNP 85230 to 85830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,173 DEBUG Processing 202/1135 atomic regions from SNP 60372 to 60972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,192 DEBUG Processing 223/1024 atomic regions from SNP 66773 to 67373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,291 DEBUG Processing 294/859 atomic regions from SNP 87957 to 88557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,307 DEBUG Processing 75/649 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,320 DEBUG Processing 248/474 atomic regions from SNP 74347 to 74948 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,333 DEBUG Processing 286/902 atomic regions from SNP 85530 to 86130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,462 DEBUG Processing 224/1024 atomic regions from SNP 67073 to 67673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,473 DEBUG Processing 203/1135 atomic regions from SNP 60672 to 61272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,530 DEBUG Processing 295/859 atomic regions from SNP 88257 to 88857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,557 DEBUG Processing 76/649 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,558 DEBUG Processing 249/474 atomic regions from SNP 74648 to 75249 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,579 DEBUG Processing 287/902 atomic regions from SNP 85830 to 86430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,736 DEBUG Processing 225/1024 atomic regions from SNP 67373 to 67973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,754 DEBUG Processing 204/1135 atomic regions from SNP 60972 to 61572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,770 DEBUG Processing 296/859 atomic regions from SNP 88557 to 89157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,794 DEBUG Processing 250/474 atomic regions from SNP 74949 to 75550 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,799 DEBUG Processing 77/649 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,826 DEBUG Processing 288/902 atomic regions from SNP 86130 to 86730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,008 DEBUG Processing 226/1024 atomic regions from SNP 67673 to 68273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,015 DEBUG Processing 297/859 atomic regions from SNP 88857 to 89457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,032 DEBUG Processing 251/474 atomic regions from SNP 75250 to 75851 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,033 DEBUG Processing 205/1135 atomic regions from SNP 61272 to 61872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,043 DEBUG Processing 78/649 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,075 DEBUG Processing 289/902 atomic regions from SNP 86430 to 87030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,263 DEBUG Processing 298/859 atomic regions from SNP 89157 to 89757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,273 DEBUG Processing 252/474 atomic regions from SNP 75551 to 76152 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,284 DEBUG Processing 227/1024 atomic regions from SNP 67973 to 68573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,288 DEBUG Processing 79/649 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,319 DEBUG Processing 206/1135 atomic regions from SNP 61572 to 62172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,328 DEBUG Processing 290/902 atomic regions from SNP 86730 to 87330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,509 DEBUG Processing 299/859 atomic regions from SNP 89457 to 90057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,514 DEBUG Processing 253/474 atomic regions from SNP 75852 to 76453 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,535 DEBUG Processing 80/649 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,559 DEBUG Processing 228/1024 atomic regions from SNP 68273 to 68873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,584 DEBUG Processing 291/902 atomic regions from SNP 87030 to 87630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,611 DEBUG Processing 207/1135 atomic regions from SNP 61872 to 62472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,744 DEBUG Processing 254/474 atomic regions from SNP 76153 to 76754 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,745 DEBUG Processing 300/859 atomic regions from SNP 89757 to 90357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,774 DEBUG Processing 81/649 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,830 DEBUG Processing 229/1024 atomic regions from SNP 68573 to 69173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,838 DEBUG Processing 292/902 atomic regions from SNP 87330 to 87930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,926 DEBUG Processing 208/1135 atomic regions from SNP 62172 to 62772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,969 DEBUG Processing 255/474 atomic regions from SNP 76454 to 77055 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,978 DEBUG Processing 301/859 atomic regions from SNP 90057 to 90657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,005 DEBUG Processing 82/649 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,089 DEBUG Processing 293/902 atomic regions from SNP 87630 to 88230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,105 DEBUG Processing 230/1024 atomic regions from SNP 68873 to 69473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,202 DEBUG Processing 256/474 atomic regions from SNP 76755 to 77356 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,219 DEBUG Processing 302/859 atomic regions from SNP 90357 to 90957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,234 DEBUG Processing 209/1135 atomic regions from SNP 62472 to 63072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,239 DEBUG Processing 83/649 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,335 DEBUG Processing 294/902 atomic regions from SNP 87930 to 88530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,375 DEBUG Processing 231/1024 atomic regions from SNP 69173 to 69773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,441 DEBUG Processing 257/474 atomic regions from SNP 77056 to 77657 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,472 DEBUG Processing 303/859 atomic regions from SNP 90657 to 91257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,481 DEBUG Processing 84/649 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,517 DEBUG Processing 210/1135 atomic regions from SNP 62772 to 63372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,577 DEBUG Processing 295/902 atomic regions from SNP 88230 to 88830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,645 DEBUG Processing 232/1024 atomic regions from SNP 69473 to 70073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,686 DEBUG Processing 258/474 atomic regions from SNP 77357 to 77958 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,723 DEBUG Processing 304/859 atomic regions from SNP 90957 to 91557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,728 DEBUG Processing 85/649 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,817 DEBUG Processing 211/1135 atomic regions from SNP 63072 to 63672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,817 DEBUG Processing 296/902 atomic regions from SNP 88530 to 89130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,916 DEBUG Processing 233/1024 atomic regions from SNP 69773 to 70373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,926 DEBUG Processing 259/474 atomic regions from SNP 77658 to 78258 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,973 DEBUG Processing 86/649 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,977 DEBUG Processing 305/859 atomic regions from SNP 91257 to 91857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,061 DEBUG Processing 297/902 atomic regions from SNP 88830 to 89430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,116 DEBUG Processing 212/1135 atomic regions from SNP 63372 to 63972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,167 DEBUG Processing 260/474 atomic regions from SNP 77958 to 78558 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:55,188 DEBUG Processing 234/1024 atomic regions from SNP 70073 to 70673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,216 DEBUG Processing 87/649 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,236 DEBUG Processing 306/859 atomic regions from SNP 91557 to 92157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,309 DEBUG Processing 298/902 atomic regions from SNP 89130 to 89730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,394 DEBUG Processing 213/1135 atomic regions from SNP 63672 to 64272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,400 DEBUG Processing 261/474 atomic regions from SNP 78258 to 78858 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:55,455 DEBUG Processing 88/649 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,466 DEBUG Processing 235/1024 atomic regions from SNP 70373 to 70973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,490 DEBUG Processing 307/859 atomic regions from SNP 91857 to 92457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,558 DEBUG Processing 299/902 atomic regions from SNP 89430 to 90030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,636 DEBUG Processing 262/474 atomic regions from SNP 78558 to 79158 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:55,661 DEBUG Processing 214/1135 atomic regions from SNP 63972 to 64572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,696 DEBUG Processing 89/649 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,739 DEBUG Processing 308/859 atomic regions from SNP 92157 to 92757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,742 DEBUG Processing 236/1024 atomic regions from SNP 70673 to 71273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,806 DEBUG Processing 300/902 atomic regions from SNP 89730 to 90330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,882 DEBUG Processing 263/474 atomic regions from SNP 78858 to 79458 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:55,933 DEBUG Processing 215/1135 atomic regions from SNP 64272 to 64872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,942 DEBUG Processing 90/649 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,989 DEBUG Processing 309/859 atomic regions from SNP 92457 to 93057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,021 DEBUG Processing 237/1024 atomic regions from SNP 70973 to 71573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,054 DEBUG Processing 301/902 atomic regions from SNP 90030 to 90630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,118 DEBUG Processing 264/474 atomic regions from SNP 79158 to 79758 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:56,202 DEBUG Processing 91/649 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,208 DEBUG Processing 216/1135 atomic regions from SNP 64572 to 65172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,233 DEBUG Processing 310/859 atomic regions from SNP 92757 to 93357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,300 DEBUG Processing 238/1024 atomic regions from SNP 71273 to 71873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,303 DEBUG Processing 302/902 atomic regions from SNP 90330 to 90930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,353 DEBUG Processing 265/474 atomic regions from SNP 79458 to 80058 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:56,444 DEBUG Processing 92/649 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,483 DEBUG Processing 311/859 atomic regions from SNP 93057 to 93657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,488 DEBUG Processing 217/1135 atomic regions from SNP 64872 to 65472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,557 DEBUG Processing 303/902 atomic regions from SNP 90630 to 91230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,575 DEBUG Processing 239/1024 atomic regions from SNP 71573 to 72173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,591 DEBUG Processing 266/474 atomic regions from SNP 79758 to 80358 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:56,679 DEBUG Processing 93/649 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,728 DEBUG Processing 312/859 atomic regions from SNP 93357 to 93957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,770 DEBUG Processing 218/1135 atomic regions from SNP 65172 to 65772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,814 DEBUG Processing 304/902 atomic regions from SNP 90930 to 91530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,841 DEBUG Processing 267/474 atomic regions from SNP 80058 to 80658 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:56,849 DEBUG Processing 240/1024 atomic regions from SNP 71873 to 72473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,916 DEBUG Processing 94/649 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,970 DEBUG Processing 313/859 atomic regions from SNP 93657 to 94257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,056 DEBUG Processing 219/1135 atomic regions from SNP 65472 to 66072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,069 DEBUG Processing 305/902 atomic regions from SNP 91230 to 91830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,089 DEBUG Processing 268/474 atomic regions from SNP 80358 to 80958 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:57,122 DEBUG Processing 241/1024 atomic regions from SNP 72173 to 72773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,161 DEBUG Processing 95/649 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,208 DEBUG Processing 314/859 atomic regions from SNP 93957 to 94557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,321 DEBUG Processing 306/902 atomic regions from SNP 91530 to 92130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,329 DEBUG Processing 269/474 atomic regions from SNP 80658 to 81258 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:57,339 DEBUG Processing 220/1135 atomic regions from SNP 65772 to 66372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,395 DEBUG Processing 242/1024 atomic regions from SNP 72473 to 73073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,407 DEBUG Processing 96/649 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,443 DEBUG Processing 315/859 atomic regions from SNP 94257 to 94857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,565 DEBUG Processing 307/902 atomic regions from SNP 91830 to 92430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,568 DEBUG Processing 270/474 atomic regions from SNP 80958 to 81558 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:57,622 DEBUG Processing 221/1135 atomic regions from SNP 66072 to 66672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,655 DEBUG Processing 97/649 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,663 DEBUG Processing 243/1024 atomic regions from SNP 72773 to 73373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,680 DEBUG Processing 316/859 atomic regions from SNP 94557 to 95157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,797 DEBUG Processing 271/474 atomic regions from SNP 81258 to 81858 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:57,804 DEBUG Processing 308/902 atomic regions from SNP 92130 to 92730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,904 DEBUG Processing 222/1135 atomic regions from SNP 66372 to 66972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,918 DEBUG Processing 317/859 atomic regions from SNP 94857 to 95457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,928 DEBUG Processing 98/649 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,933 DEBUG Processing 244/1024 atomic regions from SNP 73073 to 73673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,026 DEBUG Processing 272/474 atomic regions from SNP 81558 to 82158 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:58,045 DEBUG Processing 309/902 atomic regions from SNP 92430 to 93030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,157 DEBUG Processing 318/859 atomic regions from SNP 95157 to 95757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,178 DEBUG Processing 223/1135 atomic regions from SNP 66672 to 67272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,183 DEBUG Processing 99/649 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,200 DEBUG Processing 245/1024 atomic regions from SNP 73373 to 73973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,264 DEBUG Processing 273/474 atomic regions from SNP 81858 to 82458 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:58,294 DEBUG Processing 310/902 atomic regions from SNP 92730 to 93330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,398 DEBUG Processing 319/859 atomic regions from SNP 95457 to 96057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,437 DEBUG Processing 100/649 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,452 DEBUG Processing 224/1135 atomic regions from SNP 66972 to 67572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,468 DEBUG Processing 246/1024 atomic regions from SNP 73673 to 74273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,504 DEBUG Processing 274/474 atomic regions from SNP 82158 to 82758 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:58,547 DEBUG Processing 311/902 atomic regions from SNP 93030 to 93630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,637 DEBUG Processing 320/859 atomic regions from SNP 95757 to 96357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,681 DEBUG Processing 101/649 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,720 DEBUG Processing 225/1135 atomic regions from SNP 67272 to 67872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,729 DEBUG Processing 247/1024 atomic regions from SNP 73973 to 74573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,744 DEBUG Processing 275/474 atomic regions from SNP 82458 to 83058 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:58,801 DEBUG Processing 312/902 atomic regions from SNP 93330 to 93930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,879 DEBUG Processing 321/859 atomic regions from SNP 96057 to 96657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,936 DEBUG Processing 102/649 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,977 DEBUG Processing 276/474 atomic regions from SNP 82758 to 83358 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:58,994 DEBUG Processing 226/1135 atomic regions from SNP 67572 to 68172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,996 DEBUG Processing 248/1024 atomic regions from SNP 74273 to 74873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,062 DEBUG Processing 313/902 atomic regions from SNP 93630 to 94230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,138 DEBUG Processing 322/859 atomic regions from SNP 96357 to 96957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,199 DEBUG Processing 103/649 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,210 DEBUG Processing 277/474 atomic regions from SNP 83058 to 83658 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:59,258 DEBUG Processing 249/1024 atomic regions from SNP 74573 to 75173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,266 DEBUG Processing 227/1135 atomic regions from SNP 67872 to 68472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,316 DEBUG Processing 314/902 atomic regions from SNP 93930 to 94530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,390 DEBUG Processing 323/859 atomic regions from SNP 96657 to 97257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,437 DEBUG Processing 278/474 atomic regions from SNP 83358 to 83958 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:59,442 DEBUG Processing 104/649 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,515 DEBUG Processing 250/1024 atomic regions from SNP 74873 to 75473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,534 DEBUG Processing 228/1135 atomic regions from SNP 68172 to 68772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,565 DEBUG Processing 315/902 atomic regions from SNP 94230 to 94830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,644 DEBUG Processing 324/859 atomic regions from SNP 96957 to 97557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,673 DEBUG Processing 279/474 atomic regions from SNP 83658 to 84258 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:59,680 DEBUG Processing 105/649 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,776 DEBUG Processing 251/1024 atomic regions from SNP 75173 to 75773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,801 DEBUG Processing 229/1135 atomic regions from SNP 68472 to 69072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,802 DEBUG Processing 316/902 atomic regions from SNP 94530 to 95130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,903 DEBUG Processing 325/859 atomic regions from SNP 97257 to 97857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,917 DEBUG Processing 280/474 atomic regions from SNP 83958 to 84558 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:59,931 DEBUG Processing 106/649 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,045 DEBUG Processing 317/902 atomic regions from SNP 94830 to 95430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,059 DEBUG Processing 252/1024 atomic regions from SNP 75473 to 76073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,077 DEBUG Processing 230/1135 atomic regions from SNP 68772 to 69372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,153 DEBUG Processing 281/474 atomic regions from SNP 84258 to 84858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:00,156 DEBUG Processing 326/859 atomic regions from SNP 97557 to 98157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,177 DEBUG Processing 107/649 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,296 DEBUG Processing 318/902 atomic regions from SNP 95130 to 95730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,327 DEBUG Processing 253/1024 atomic regions from SNP 75773 to 76373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,355 DEBUG Processing 231/1135 atomic regions from SNP 69072 to 69672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,388 DEBUG Processing 282/474 atomic regions from SNP 84558 to 85158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:00,401 DEBUG Processing 327/859 atomic regions from SNP 97857 to 98457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,427 DEBUG Processing 108/649 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,542 DEBUG Processing 319/902 atomic regions from SNP 95430 to 96030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,596 DEBUG Processing 254/1024 atomic regions from SNP 76073 to 76673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,614 DEBUG Processing 283/474 atomic regions from SNP 84858 to 85458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:00,638 DEBUG Processing 232/1135 atomic regions from SNP 69372 to 69972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,648 DEBUG Processing 328/859 atomic regions from SNP 98157 to 98757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,690 DEBUG Processing 109/649 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,796 DEBUG Processing 320/902 atomic regions from SNP 95730 to 96330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,848 DEBUG Processing 284/474 atomic regions from SNP 85158 to 85758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:00,875 DEBUG Processing 255/1024 atomic regions from SNP 76373 to 76973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,902 DEBUG Processing 329/859 atomic regions from SNP 98457 to 99057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,927 DEBUG Processing 233/1135 atomic regions from SNP 69672 to 70272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,927 DEBUG Processing 110/649 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,061 DEBUG Processing 321/902 atomic regions from SNP 96030 to 96630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,096 DEBUG Processing 285/474 atomic regions from SNP 85458 to 86058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:01,154 DEBUG Processing 330/859 atomic regions from SNP 98757 to 99357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,158 DEBUG Processing 256/1024 atomic regions from SNP 76673 to 77273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,162 DEBUG Processing 111/649 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,215 DEBUG Processing 234/1135 atomic regions from SNP 69972 to 70572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,313 DEBUG Processing 322/902 atomic regions from SNP 96330 to 96930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,335 DEBUG Processing 286/474 atomic regions from SNP 85758 to 86358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:01,396 DEBUG Processing 112/649 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,403 DEBUG Processing 331/859 atomic regions from SNP 99057 to 99657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,433 DEBUG Processing 257/1024 atomic regions from SNP 76973 to 77573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,490 DEBUG Processing 235/1135 atomic regions from SNP 70272 to 70872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,564 DEBUG Processing 323/902 atomic regions from SNP 96630 to 97230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,571 DEBUG Processing 287/474 atomic regions from SNP 86058 to 86658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:01,634 DEBUG Processing 113/649 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,651 DEBUG Processing 332/859 atomic regions from SNP 99357 to 99957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,710 DEBUG Processing 258/1024 atomic regions from SNP 77273 to 77873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,763 DEBUG Processing 236/1135 atomic regions from SNP 70572 to 71172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,802 DEBUG Processing 288/474 atomic regions from SNP 86358 to 86958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:01,811 DEBUG Processing 324/902 atomic regions from SNP 96930 to 97530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,873 DEBUG Processing 114/649 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,898 DEBUG Processing 333/859 atomic regions from SNP 99657 to 100257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,989 DEBUG Processing 259/1024 atomic regions from SNP 77573 to 78173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,030 DEBUG Processing 289/474 atomic regions from SNP 86658 to 87258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:02,036 DEBUG Processing 237/1135 atomic regions from SNP 70872 to 71472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,056 DEBUG Processing 325/902 atomic regions from SNP 97230 to 97830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,111 DEBUG Processing 115/649 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,145 DEBUG Processing 334/859 atomic regions from SNP 99957 to 100557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,266 DEBUG Processing 290/474 atomic regions from SNP 86958 to 87558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:02,271 DEBUG Processing 260/1024 atomic regions from SNP 77873 to 78473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,298 DEBUG Processing 326/902 atomic regions from SNP 97530 to 98130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,313 DEBUG Processing 238/1135 atomic regions from SNP 71172 to 71772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,345 DEBUG Processing 116/649 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,377 DEBUG Processing 335/859 atomic regions from SNP 100257 to 100857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,507 DEBUG Processing 291/474 atomic regions from SNP 87258 to 87858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:02,550 DEBUG Processing 327/902 atomic regions from SNP 97830 to 98430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,552 DEBUG Processing 261/1024 atomic regions from SNP 78173 to 78773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,582 DEBUG Processing 117/649 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,599 DEBUG Processing 239/1135 atomic regions from SNP 71472 to 72072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,617 DEBUG Processing 336/859 atomic regions from SNP 100557 to 101157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,749 DEBUG Processing 292/474 atomic regions from SNP 87558 to 88158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:02,801 DEBUG Processing 328/902 atomic regions from SNP 98130 to 98730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,820 DEBUG Processing 118/649 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,828 DEBUG Processing 262/1024 atomic regions from SNP 78473 to 79073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,850 DEBUG Processing 337/859 atomic regions from SNP 100857 to 101457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,891 DEBUG Processing 240/1135 atomic regions from SNP 71772 to 72372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,984 DEBUG Processing 293/474 atomic regions from SNP 87858 to 88458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:03,059 DEBUG Processing 329/902 atomic regions from SNP 98430 to 99030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,069 DEBUG Processing 119/649 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,096 DEBUG Processing 338/859 atomic regions from SNP 101157 to 101757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,108 DEBUG Processing 263/1024 atomic regions from SNP 78773 to 79373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,190 DEBUG Processing 241/1135 atomic regions from SNP 72072 to 72672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,221 DEBUG Processing 294/474 atomic regions from SNP 88158 to 88758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:03,307 DEBUG Processing 120/649 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,307 DEBUG Processing 330/902 atomic regions from SNP 98730 to 99330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,337 DEBUG Processing 339/859 atomic regions from SNP 101457 to 102057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,373 DEBUG Processing 264/1024 atomic regions from SNP 79073 to 79673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,454 DEBUG Processing 295/474 atomic regions from SNP 88458 to 89058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:03,462 DEBUG Processing 242/1135 atomic regions from SNP 72372 to 72972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,545 DEBUG Processing 121/649 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,551 DEBUG Processing 331/902 atomic regions from SNP 99030 to 99630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,579 DEBUG Processing 340/859 atomic regions from SNP 101757 to 102357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,637 DEBUG Processing 265/1024 atomic regions from SNP 79373 to 79973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,683 DEBUG Processing 296/474 atomic regions from SNP 88758 to 89358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:03,738 DEBUG Processing 243/1135 atomic regions from SNP 72672 to 73272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,789 DEBUG Processing 122/649 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,800 DEBUG Processing 332/902 atomic regions from SNP 99330 to 99930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,824 DEBUG Processing 341/859 atomic regions from SNP 102057 to 102657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,903 DEBUG Processing 266/1024 atomic regions from SNP 79673 to 80273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,911 DEBUG Processing 297/474 atomic regions from SNP 89058 to 89658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:04,010 DEBUG Processing 244/1135 atomic regions from SNP 72972 to 73572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,030 DEBUG Processing 123/649 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,047 DEBUG Processing 333/902 atomic regions from SNP 99630 to 100230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,071 DEBUG Processing 342/859 atomic regions from SNP 102357 to 102957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,134 DEBUG Processing 298/474 atomic regions from SNP 89358 to 89958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:04,164 DEBUG Processing 267/1024 atomic regions from SNP 79973 to 80573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,271 DEBUG Processing 124/649 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,285 DEBUG Processing 245/1135 atomic regions from SNP 73272 to 73872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,298 DEBUG Processing 334/902 atomic regions from SNP 99930 to 100530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,321 DEBUG Processing 343/859 atomic regions from SNP 102657 to 103257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,362 DEBUG Processing 299/474 atomic regions from SNP 89658 to 90258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:04,435 DEBUG Processing 268/1024 atomic regions from SNP 80273 to 80873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,516 DEBUG Processing 125/649 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,550 DEBUG Processing 335/902 atomic regions from SNP 100230 to 100830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,561 DEBUG Processing 246/1135 atomic regions from SNP 73572 to 74172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,562 DEBUG Processing 344/859 atomic regions from SNP 102957 to 103557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,594 DEBUG Processing 300/474 atomic regions from SNP 89958 to 90558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:04,701 DEBUG Processing 269/1024 atomic regions from SNP 80573 to 81173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,760 DEBUG Processing 126/649 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,802 DEBUG Processing 345/859 atomic regions from SNP 103257 to 103857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,802 DEBUG Processing 336/902 atomic regions from SNP 100530 to 101130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,834 DEBUG Processing 247/1135 atomic regions from SNP 73872 to 74472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,838 DEBUG Processing 301/474 atomic regions from SNP 90258 to 90858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:04,972 DEBUG Processing 270/1024 atomic regions from SNP 80873 to 81473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,002 DEBUG Processing 127/649 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,043 DEBUG Processing 346/859 atomic regions from SNP 103557 to 104157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,056 DEBUG Processing 337/902 atomic regions from SNP 100830 to 101430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,097 DEBUG Processing 302/474 atomic regions from SNP 90558 to 91158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:05,105 DEBUG Processing 248/1135 atomic regions from SNP 74172 to 74772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,245 DEBUG Processing 128/649 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,250 DEBUG Processing 271/1024 atomic regions from SNP 81173 to 81773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,288 DEBUG Processing 347/859 atomic regions from SNP 103857 to 104457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,313 DEBUG Processing 338/902 atomic regions from SNP 101130 to 101730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,332 DEBUG Processing 303/474 atomic regions from SNP 90858 to 91458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:05,377 DEBUG Processing 249/1135 atomic regions from SNP 74472 to 75072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,479 DEBUG Processing 129/649 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,529 DEBUG Processing 272/1024 atomic regions from SNP 81473 to 82073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,537 DEBUG Processing 348/859 atomic regions from SNP 104157 to 104757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,567 DEBUG Processing 339/902 atomic regions from SNP 101430 to 102030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,599 DEBUG Processing 304/474 atomic regions from SNP 91158 to 91758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:05,649 DEBUG Processing 250/1135 atomic regions from SNP 74772 to 75372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,713 DEBUG Processing 130/649 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,793 DEBUG Processing 349/859 atomic regions from SNP 104457 to 105057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,815 DEBUG Processing 273/1024 atomic regions from SNP 81773 to 82373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,821 DEBUG Processing 340/902 atomic regions from SNP 101730 to 102330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,856 DEBUG Processing 305/474 atomic regions from SNP 91458 to 92058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:05,925 DEBUG Processing 251/1135 atomic regions from SNP 75072 to 75672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,948 DEBUG Processing 131/649 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,040 DEBUG Processing 350/859 atomic regions from SNP 104757 to 105357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,069 DEBUG Processing 341/902 atomic regions from SNP 102030 to 102630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,090 DEBUG Processing 306/474 atomic regions from SNP 91758 to 92358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:06,096 DEBUG Processing 274/1024 atomic regions from SNP 82073 to 82673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,183 DEBUG Processing 132/649 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,200 DEBUG Processing 252/1135 atomic regions from SNP 75372 to 75972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,280 DEBUG Processing 351/859 atomic regions from SNP 105057 to 105657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,311 DEBUG Processing 342/902 atomic regions from SNP 102330 to 102930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,324 DEBUG Processing 307/474 atomic regions from SNP 92058 to 92658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:06,373 DEBUG Processing 275/1024 atomic regions from SNP 82373 to 82973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,424 DEBUG Processing 133/649 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,477 DEBUG Processing 253/1135 atomic regions from SNP 75672 to 76272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,520 DEBUG Processing 352/859 atomic regions from SNP 105357 to 105957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,551 DEBUG Processing 343/902 atomic regions from SNP 102630 to 103230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,554 DEBUG Processing 308/474 atomic regions from SNP 92358 to 92958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:06,647 DEBUG Processing 276/1024 atomic regions from SNP 82673 to 83273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,664 DEBUG Processing 134/649 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,756 DEBUG Processing 254/1135 atomic regions from SNP 75972 to 76572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,761 DEBUG Processing 353/859 atomic regions from SNP 105657 to 106257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,780 DEBUG Processing 309/474 atomic regions from SNP 92658 to 93258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:06,791 DEBUG Processing 344/902 atomic regions from SNP 102930 to 103530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,898 DEBUG Processing 135/649 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,917 DEBUG Processing 277/1024 atomic regions from SNP 82973 to 83573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,015 DEBUG Processing 310/474 atomic regions from SNP 92958 to 93558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:07,020 DEBUG Processing 354/859 atomic regions from SNP 105957 to 106557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,040 DEBUG Processing 345/902 atomic regions from SNP 103230 to 103830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,041 DEBUG Processing 255/1135 atomic regions from SNP 76272 to 76872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,122 DEBUG Processing 136/649 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,175 DEBUG Processing 278/1024 atomic regions from SNP 83273 to 83873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,258 DEBUG Processing 311/474 atomic regions from SNP 93258 to 93858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:07,290 DEBUG Processing 355/859 atomic regions from SNP 106257 to 106857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,296 DEBUG Processing 346/902 atomic regions from SNP 103530 to 104130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,327 DEBUG Processing 256/1135 atomic regions from SNP 76572 to 77172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,349 DEBUG Processing 137/649 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,443 DEBUG Processing 279/1024 atomic regions from SNP 83573 to 84173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,498 DEBUG Processing 312/474 atomic regions from SNP 93558 to 94158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:07,559 DEBUG Processing 347/902 atomic regions from SNP 103830 to 104430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,563 DEBUG Processing 356/859 atomic regions from SNP 106557 to 107157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,595 DEBUG Processing 138/649 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,613 DEBUG Processing 257/1135 atomic regions from SNP 76872 to 77472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,696 DEBUG Processing 280/1024 atomic regions from SNP 83873 to 84473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,723 DEBUG Processing 313/474 atomic regions from SNP 93858 to 94458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:07,816 DEBUG Processing 348/902 atomic regions from SNP 104130 to 104730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,834 DEBUG Processing 357/859 atomic regions from SNP 106857 to 107457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,846 DEBUG Processing 139/649 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,901 DEBUG Processing 258/1135 atomic regions from SNP 77172 to 77772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,947 DEBUG Processing 314/474 atomic regions from SNP 94158 to 94758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:07,953 DEBUG Processing 281/1024 atomic regions from SNP 84173 to 84773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,065 DEBUG Processing 349/902 atomic regions from SNP 104430 to 105030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,083 DEBUG Processing 358/859 atomic regions from SNP 107157 to 107757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,094 DEBUG Processing 140/649 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,181 DEBUG Processing 259/1135 atomic regions from SNP 77472 to 78072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,189 DEBUG Processing 315/474 atomic regions from SNP 94458 to 95058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:08,216 DEBUG Processing 282/1024 atomic regions from SNP 84473 to 85073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,307 DEBUG Processing 350/902 atomic regions from SNP 104730 to 105330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,322 DEBUG Processing 359/859 atomic regions from SNP 107457 to 108057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,337 DEBUG Processing 141/649 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,441 DEBUG Processing 316/474 atomic regions from SNP 94758 to 95358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:08,462 DEBUG Processing 260/1135 atomic regions from SNP 77772 to 78372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,487 DEBUG Processing 283/1024 atomic regions from SNP 84773 to 85373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,541 DEBUG Processing 351/902 atomic regions from SNP 105030 to 105630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,556 DEBUG Processing 360/859 atomic regions from SNP 107757 to 108357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,569 DEBUG Processing 142/649 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,703 DEBUG Processing 317/474 atomic regions from SNP 95058 to 95658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:08,742 DEBUG Processing 261/1135 atomic regions from SNP 78072 to 78672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,761 DEBUG Processing 284/1024 atomic regions from SNP 85073 to 85673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,778 DEBUG Processing 352/902 atomic regions from SNP 105330 to 105930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,796 DEBUG Processing 143/649 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,799 DEBUG Processing 361/859 atomic regions from SNP 108057 to 108657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,953 DEBUG Processing 318/474 atomic regions from SNP 95358 to 95958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:09,024 DEBUG Processing 353/902 atomic regions from SNP 105630 to 106230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,028 DEBUG Processing 262/1135 atomic regions from SNP 78372 to 78972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,031 DEBUG Processing 144/649 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,038 DEBUG Processing 285/1024 atomic regions from SNP 85373 to 85973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,047 DEBUG Processing 362/859 atomic regions from SNP 108357 to 108957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,197 DEBUG Processing 319/474 atomic regions from SNP 95658 to 96258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:09,275 DEBUG Processing 145/649 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,276 DEBUG Processing 354/902 atomic regions from SNP 105930 to 106530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,300 DEBUG Processing 363/859 atomic regions from SNP 108657 to 109257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,314 DEBUG Processing 263/1135 atomic regions from SNP 78672 to 79272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,320 DEBUG Processing 286/1024 atomic regions from SNP 85673 to 86273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,450 DEBUG Processing 320/474 atomic regions from SNP 95958 to 96558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:09,522 DEBUG Processing 146/649 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,540 DEBUG Processing 355/902 atomic regions from SNP 106230 to 106830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,553 DEBUG Processing 364/859 atomic regions from SNP 108957 to 109557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,603 DEBUG Processing 287/1024 atomic regions from SNP 85973 to 86573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,603 DEBUG Processing 264/1135 atomic regions from SNP 78972 to 79572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,686 DEBUG Processing 321/474 atomic regions from SNP 96258 to 96858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:09,763 DEBUG Processing 147/649 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,798 DEBUG Processing 365/859 atomic regions from SNP 109257 to 109857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,810 DEBUG Processing 356/902 atomic regions from SNP 106530 to 107130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,888 DEBUG Processing 288/1024 atomic regions from SNP 86273 to 86873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,892 DEBUG Processing 265/1135 atomic regions from SNP 79272 to 79872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,917 DEBUG Processing 322/474 atomic regions from SNP 96558 to 97158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:09,999 DEBUG Processing 148/649 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,034 DEBUG Processing 366/859 atomic regions from SNP 109557 to 110157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,060 DEBUG Processing 357/902 atomic regions from SNP 106830 to 107430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,155 DEBUG Processing 323/474 atomic regions from SNP 96858 to 97458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:10,174 DEBUG Processing 289/1024 atomic regions from SNP 86573 to 87173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,185 DEBUG Processing 266/1135 atomic regions from SNP 79572 to 80172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,233 DEBUG Processing 149/649 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,263 DEBUG Processing 367/859 atomic regions from SNP 109857 to 110457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,299 DEBUG Processing 358/902 atomic regions from SNP 107130 to 107730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,398 DEBUG Processing 324/474 atomic regions from SNP 97158 to 97758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:10,460 DEBUG Processing 290/1024 atomic regions from SNP 86873 to 87473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,481 DEBUG Processing 267/1135 atomic regions from SNP 79872 to 80472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,487 DEBUG Processing 150/649 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,511 DEBUG Processing 368/859 atomic regions from SNP 110157 to 110757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,547 DEBUG Processing 359/902 atomic regions from SNP 107430 to 108030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,642 DEBUG Processing 325/474 atomic regions from SNP 97458 to 98058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:10,730 DEBUG Processing 151/649 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,739 DEBUG Processing 291/1024 atomic regions from SNP 87173 to 87773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,767 DEBUG Processing 369/859 atomic regions from SNP 110457 to 111057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,771 DEBUG Processing 268/1135 atomic regions from SNP 80172 to 80772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,793 DEBUG Processing 360/902 atomic regions from SNP 107730 to 108330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,889 DEBUG Processing 326/474 atomic regions from SNP 97758 to 98358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:10,965 DEBUG Processing 152/649 atomic regions from SNP 45451 to 46052 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,012 DEBUG Processing 292/1024 atomic regions from SNP 87473 to 88073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,029 DEBUG Processing 370/859 atomic regions from SNP 110757 to 111357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,041 DEBUG Processing 361/902 atomic regions from SNP 108030 to 108630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,059 DEBUG Processing 269/1135 atomic regions from SNP 80472 to 81072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,119 DEBUG Processing 327/474 atomic regions from SNP 98058 to 98658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:11,196 DEBUG Processing 153/649 atomic regions from SNP 45752 to 46353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,276 DEBUG Processing 371/859 atomic regions from SNP 111057 to 111657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,287 DEBUG Processing 293/1024 atomic regions from SNP 87773 to 88373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,288 DEBUG Processing 362/902 atomic regions from SNP 108330 to 108930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,347 DEBUG Processing 270/1135 atomic regions from SNP 80772 to 81372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,354 DEBUG Processing 328/474 atomic regions from SNP 98358 to 98958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:11,429 DEBUG Processing 154/649 atomic regions from SNP 46053 to 46654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,520 DEBUG Processing 372/859 atomic regions from SNP 111357 to 111957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,534 DEBUG Processing 363/902 atomic regions from SNP 108630 to 109230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,562 DEBUG Processing 294/1024 atomic regions from SNP 88073 to 88673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,593 DEBUG Processing 329/474 atomic regions from SNP 98658 to 99258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:11,633 DEBUG Processing 271/1135 atomic regions from SNP 81072 to 81672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,664 DEBUG Processing 155/649 atomic regions from SNP 46354 to 46955 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,753 DEBUG Processing 373/859 atomic regions from SNP 111657 to 112257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,773 DEBUG Processing 364/902 atomic regions from SNP 108930 to 109530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,829 DEBUG Processing 330/474 atomic regions from SNP 98958 to 99558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:11,830 DEBUG Processing 295/1024 atomic regions from SNP 88373 to 88973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,906 DEBUG Processing 156/649 atomic regions from SNP 46655 to 47256 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,915 DEBUG Processing 272/1135 atomic regions from SNP 81372 to 81972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,985 DEBUG Processing 374/859 atomic regions from SNP 111957 to 112557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,024 DEBUG Processing 365/902 atomic regions from SNP 109230 to 109830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,058 DEBUG Processing 331/474 atomic regions from SNP 99258 to 99858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:12,100 DEBUG Processing 296/1024 atomic regions from SNP 88673 to 89273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,148 DEBUG Processing 157/649 atomic regions from SNP 46956 to 47557 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,199 DEBUG Processing 273/1135 atomic regions from SNP 81672 to 82272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,224 DEBUG Processing 375/859 atomic regions from SNP 112257 to 112857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,262 DEBUG Processing 366/902 atomic regions from SNP 109530 to 110130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,282 DEBUG Processing 332/474 atomic regions from SNP 99558 to 100158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:12,366 DEBUG Processing 297/1024 atomic regions from SNP 88973 to 89573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,390 DEBUG Processing 158/649 atomic regions from SNP 47257 to 47858 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,469 DEBUG Processing 376/859 atomic regions from SNP 112557 to 113157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,478 DEBUG Processing 274/1135 atomic regions from SNP 81972 to 82572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,502 DEBUG Processing 367/902 atomic regions from SNP 109830 to 110430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,507 DEBUG Processing 333/474 atomic regions from SNP 99858 to 100458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:12,628 DEBUG Processing 298/1024 atomic regions from SNP 89273 to 89873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,629 DEBUG Processing 159/649 atomic regions from SNP 47558 to 48159 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,711 DEBUG Processing 377/859 atomic regions from SNP 112857 to 113457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,731 DEBUG Processing 334/474 atomic regions from SNP 100158 to 100758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:12,740 DEBUG Processing 368/902 atomic regions from SNP 110130 to 110730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,757 DEBUG Processing 275/1135 atomic regions from SNP 82272 to 82872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,869 DEBUG Processing 160/649 atomic regions from SNP 47859 to 48460 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,888 DEBUG Processing 299/1024 atomic regions from SNP 89573 to 90173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,950 DEBUG Processing 378/859 atomic regions from SNP 113157 to 113757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,957 DEBUG Processing 335/474 atomic regions from SNP 100458 to 101058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:12,980 DEBUG Processing 369/902 atomic regions from SNP 110430 to 111030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,040 DEBUG Processing 276/1135 atomic regions from SNP 82572 to 83172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,110 DEBUG Processing 161/649 atomic regions from SNP 48160 to 48761 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,151 DEBUG Processing 300/1024 atomic regions from SNP 89873 to 90473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,183 DEBUG Processing 379/859 atomic regions from SNP 113457 to 114057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,184 DEBUG Processing 336/474 atomic regions from SNP 100758 to 101358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:13,217 DEBUG Processing 370/902 atomic regions from SNP 110730 to 111330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,328 DEBUG Processing 277/1135 atomic regions from SNP 82872 to 83472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,353 DEBUG Processing 162/649 atomic regions from SNP 48461 to 49062 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,423 DEBUG Processing 337/474 atomic regions from SNP 101058 to 101658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:13,423 DEBUG Processing 301/1024 atomic regions from SNP 90173 to 90773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,424 DEBUG Processing 380/859 atomic regions from SNP 113757 to 114357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,463 DEBUG Processing 371/902 atomic regions from SNP 111030 to 111630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,597 DEBUG Processing 163/649 atomic regions from SNP 48762 to 49363 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,613 DEBUG Processing 278/1135 atomic regions from SNP 83172 to 83772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,657 DEBUG Processing 338/474 atomic regions from SNP 101358 to 101958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:13,665 DEBUG Processing 381/859 atomic regions from SNP 114057 to 114657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,692 DEBUG Processing 302/1024 atomic regions from SNP 90473 to 91073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,705 DEBUG Processing 372/902 atomic regions from SNP 111330 to 111930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,835 DEBUG Processing 164/649 atomic regions from SNP 49063 to 49664 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,896 DEBUG Processing 339/474 atomic regions from SNP 101658 to 102258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:13,899 DEBUG Processing 279/1135 atomic regions from SNP 83472 to 84072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,918 DEBUG Processing 382/859 atomic regions from SNP 114357 to 114957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,958 DEBUG Processing 373/902 atomic regions from SNP 111630 to 112230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,973 DEBUG Processing 303/1024 atomic regions from SNP 90773 to 91373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,076 DEBUG Processing 165/649 atomic regions from SNP 49364 to 49965 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,123 DEBUG Processing 340/474 atomic regions from SNP 101958 to 102558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:14,161 DEBUG Processing 383/859 atomic regions from SNP 114657 to 115257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,178 DEBUG Processing 280/1135 atomic regions from SNP 83772 to 84372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,209 DEBUG Processing 374/902 atomic regions from SNP 111930 to 112530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,244 DEBUG Processing 304/1024 atomic regions from SNP 91073 to 91673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,320 DEBUG Processing 166/649 atomic regions from SNP 49665 to 50266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,354 DEBUG Processing 341/474 atomic regions from SNP 102258 to 102858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:14,403 DEBUG Processing 384/859 atomic regions from SNP 114957 to 115557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,454 DEBUG Processing 281/1135 atomic regions from SNP 84072 to 84672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,456 DEBUG Processing 375/902 atomic regions from SNP 112230 to 112830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,519 DEBUG Processing 305/1024 atomic regions from SNP 91373 to 91973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,568 DEBUG Processing 167/649 atomic regions from SNP 49966 to 50567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,592 DEBUG Processing 342/474 atomic regions from SNP 102558 to 103158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:14,644 DEBUG Processing 385/859 atomic regions from SNP 115257 to 115857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,695 DEBUG Processing 376/902 atomic regions from SNP 112530 to 113130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,730 DEBUG Processing 282/1135 atomic regions from SNP 84372 to 84972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,785 DEBUG Processing 306/1024 atomic regions from SNP 91673 to 92273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,811 DEBUG Processing 168/649 atomic regions from SNP 50267 to 50868 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,838 DEBUG Processing 343/474 atomic regions from SNP 102858 to 103458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:14,889 DEBUG Processing 386/859 atomic regions from SNP 115557 to 116157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,933 DEBUG Processing 377/902 atomic regions from SNP 112830 to 113430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,007 DEBUG Processing 283/1135 atomic regions from SNP 84672 to 85272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,052 DEBUG Processing 169/649 atomic regions from SNP 50568 to 51169 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,052 DEBUG Processing 307/1024 atomic regions from SNP 91973 to 92573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,083 DEBUG Processing 344/474 atomic regions from SNP 103158 to 103758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:15,133 DEBUG Processing 387/859 atomic regions from SNP 115857 to 116457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,175 DEBUG Processing 378/902 atomic regions from SNP 113130 to 113730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,280 DEBUG Processing 284/1135 atomic regions from SNP 84972 to 85572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,287 DEBUG Processing 170/649 atomic regions from SNP 50869 to 51470 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,318 DEBUG Processing 308/1024 atomic regions from SNP 92273 to 92873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,325 DEBUG Processing 345/474 atomic regions from SNP 103458 to 104058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:15,379 DEBUG Processing 388/859 atomic regions from SNP 116157 to 116757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,420 DEBUG Processing 379/902 atomic regions from SNP 113430 to 114030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,521 DEBUG Processing 171/649 atomic regions from SNP 51170 to 51771 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,570 DEBUG Processing 346/474 atomic regions from SNP 103758 to 104358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:15,577 DEBUG Processing 285/1135 atomic regions from SNP 85272 to 85872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,584 DEBUG Processing 309/1024 atomic regions from SNP 92573 to 93173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,625 DEBUG Processing 389/859 atomic regions from SNP 116457 to 117057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,666 DEBUG Processing 380/902 atomic regions from SNP 113730 to 114330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,755 DEBUG Processing 172/649 atomic regions from SNP 51471 to 52072 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,796 DEBUG Processing 347/474 atomic regions from SNP 104058 to 104658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:15,850 DEBUG Processing 310/1024 atomic regions from SNP 92873 to 93473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,867 DEBUG Processing 390/859 atomic regions from SNP 116757 to 117357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,871 DEBUG Processing 286/1135 atomic regions from SNP 85572 to 86172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,908 DEBUG Processing 381/902 atomic regions from SNP 114030 to 114630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,995 DEBUG Processing 173/649 atomic regions from SNP 51772 to 52373 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,030 DEBUG Processing 348/474 atomic regions from SNP 104358 to 104958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:16,108 DEBUG Processing 391/859 atomic regions from SNP 117057 to 117657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,119 DEBUG Processing 311/1024 atomic regions from SNP 93173 to 93773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,147 DEBUG Processing 382/902 atomic regions from SNP 114330 to 114930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,154 DEBUG Processing 287/1135 atomic regions from SNP 85872 to 86472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,238 DEBUG Processing 174/649 atomic regions from SNP 52073 to 52674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,265 DEBUG Processing 349/474 atomic regions from SNP 104658 to 105258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:16,351 DEBUG Processing 392/859 atomic regions from SNP 117357 to 117957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,391 DEBUG Processing 383/902 atomic regions from SNP 114630 to 115230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,394 DEBUG Processing 312/1024 atomic regions from SNP 93473 to 94073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,442 DEBUG Processing 288/1135 atomic regions from SNP 86172 to 86772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,474 DEBUG Processing 175/649 atomic regions from SNP 52374 to 52975 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,497 DEBUG Processing 350/474 atomic regions from SNP 104958 to 105558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:16,593 DEBUG Processing 393/859 atomic regions from SNP 117657 to 118257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,636 DEBUG Processing 384/902 atomic regions from SNP 114930 to 115530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,666 DEBUG Processing 313/1024 atomic regions from SNP 93773 to 94373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,709 DEBUG Processing 176/649 atomic regions from SNP 52675 to 53276 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,724 DEBUG Processing 289/1135 atomic regions from SNP 86472 to 87072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,730 DEBUG Processing 351/474 atomic regions from SNP 105258 to 105858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:16,838 DEBUG Processing 394/859 atomic regions from SNP 117957 to 118557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,881 DEBUG Processing 385/902 atomic regions from SNP 115230 to 115830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,937 DEBUG Processing 314/1024 atomic regions from SNP 94073 to 94673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,948 DEBUG Processing 177/649 atomic regions from SNP 52976 to 53577 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,967 DEBUG Processing 352/474 atomic regions from SNP 105558 to 106158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:16,999 DEBUG Processing 290/1135 atomic regions from SNP 86772 to 87372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,088 DEBUG Processing 395/859 atomic regions from SNP 118257 to 118857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,127 DEBUG Processing 386/902 atomic regions from SNP 115530 to 116130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,186 DEBUG Processing 178/649 atomic regions from SNP 53277 to 53878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,204 DEBUG Processing 315/1024 atomic regions from SNP 94373 to 94973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,206 DEBUG Processing 353/474 atomic regions from SNP 105858 to 106458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:17,272 DEBUG Processing 291/1135 atomic regions from SNP 87072 to 87672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,334 DEBUG Processing 396/859 atomic regions from SNP 118557 to 119157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,375 DEBUG Processing 387/902 atomic regions from SNP 115830 to 116430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,427 DEBUG Processing 179/649 atomic regions from SNP 53578 to 54179 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,437 DEBUG Processing 354/474 atomic regions from SNP 106158 to 106758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:17,474 DEBUG Processing 316/1024 atomic regions from SNP 94673 to 95273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,545 DEBUG Processing 292/1135 atomic regions from SNP 87372 to 87972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,574 DEBUG Processing 397/859 atomic regions from SNP 118857 to 119457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,621 DEBUG Processing 388/902 atomic regions from SNP 116130 to 116730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,670 DEBUG Processing 180/649 atomic regions from SNP 53879 to 54480 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,671 DEBUG Processing 355/474 atomic regions from SNP 106458 to 107058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:17,743 DEBUG Processing 317/1024 atomic regions from SNP 94973 to 95573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,814 DEBUG Processing 398/859 atomic regions from SNP 119157 to 119757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,815 DEBUG Processing 293/1135 atomic regions from SNP 87672 to 88272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,865 DEBUG Processing 389/902 atomic regions from SNP 116430 to 117030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,910 DEBUG Processing 181/649 atomic regions from SNP 54180 to 54781 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,928 DEBUG Processing 356/474 atomic regions from SNP 106758 to 107358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:18,018 DEBUG Processing 318/1024 atomic regions from SNP 95273 to 95873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,061 DEBUG Processing 399/859 atomic regions from SNP 119457 to 120057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,090 DEBUG Processing 294/1135 atomic regions from SNP 87972 to 88572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,109 DEBUG Processing 390/902 atomic regions from SNP 116730 to 117330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,150 DEBUG Processing 182/649 atomic regions from SNP 54481 to 55082 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,196 DEBUG Processing 357/474 atomic regions from SNP 107058 to 107658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:18,294 DEBUG Processing 319/1024 atomic regions from SNP 95573 to 96173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,314 DEBUG Processing 400/859 atomic regions from SNP 119757 to 120357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,353 DEBUG Processing 391/902 atomic regions from SNP 117030 to 117630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,368 DEBUG Processing 295/1135 atomic regions from SNP 88272 to 88872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,391 DEBUG Processing 183/649 atomic regions from SNP 54782 to 55383 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,453 DEBUG Processing 358/474 atomic regions from SNP 107358 to 107958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:18,572 DEBUG Processing 320/1024 atomic regions from SNP 95873 to 96473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,583 DEBUG Processing 401/859 atomic regions from SNP 120057 to 120657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,597 DEBUG Processing 392/902 atomic regions from SNP 117330 to 117930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,634 DEBUG Processing 184/649 atomic regions from SNP 55083 to 55684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,651 DEBUG Processing 296/1135 atomic regions from SNP 88572 to 89172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,689 DEBUG Processing 359/474 atomic regions from SNP 107658 to 108258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:18,841 DEBUG Processing 402/859 atomic regions from SNP 120357 to 120957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,842 DEBUG Processing 393/902 atomic regions from SNP 117630 to 118230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,859 DEBUG Processing 321/1024 atomic regions from SNP 96173 to 96773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,876 DEBUG Processing 185/649 atomic regions from SNP 55384 to 55985 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,931 DEBUG Processing 297/1135 atomic regions from SNP 88872 to 89472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,932 DEBUG Processing 360/474 atomic regions from SNP 107958 to 108558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:19,082 DEBUG Processing 394/902 atomic regions from SNP 117930 to 118530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,087 DEBUG Processing 403/859 atomic regions from SNP 120657 to 121257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,116 DEBUG Processing 186/649 atomic regions from SNP 55685 to 56286 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,148 DEBUG Processing 322/1024 atomic regions from SNP 96473 to 97073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,189 DEBUG Processing 361/474 atomic regions from SNP 108258 to 108858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:19,212 DEBUG Processing 298/1135 atomic regions from SNP 89172 to 89772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,315 DEBUG Processing 395/902 atomic regions from SNP 118230 to 118830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,324 DEBUG Processing 404/859 atomic regions from SNP 120957 to 121557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,355 DEBUG Processing 187/649 atomic regions from SNP 55986 to 56587 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,428 DEBUG Processing 323/1024 atomic regions from SNP 96773 to 97373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,453 DEBUG Processing 362/474 atomic regions from SNP 108558 to 109158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:19,494 DEBUG Processing 299/1135 atomic regions from SNP 89472 to 90072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,548 DEBUG Processing 396/902 atomic regions from SNP 118530 to 119130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,563 DEBUG Processing 405/859 atomic regions from SNP 121257 to 121857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,585 DEBUG Processing 188/649 atomic regions from SNP 56287 to 56888 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,702 DEBUG Processing 363/474 atomic regions from SNP 108858 to 109458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:19,704 DEBUG Processing 324/1024 atomic regions from SNP 97073 to 97673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,775 DEBUG Processing 300/1135 atomic regions from SNP 89772 to 90372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,789 DEBUG Processing 397/902 atomic regions from SNP 118830 to 119430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,820 DEBUG Processing 189/649 atomic regions from SNP 56588 to 57189 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,822 DEBUG Processing 406/859 atomic regions from SNP 121557 to 122157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,939 DEBUG Processing 364/474 atomic regions from SNP 109158 to 109758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:19,980 DEBUG Processing 325/1024 atomic regions from SNP 97373 to 97973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,035 DEBUG Processing 398/902 atomic regions from SNP 119130 to 119730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,054 DEBUG Processing 301/1135 atomic regions from SNP 90072 to 90672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,059 DEBUG Processing 407/859 atomic regions from SNP 121857 to 122457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,059 DEBUG Processing 190/649 atomic regions from SNP 56889 to 57490 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,171 DEBUG Processing 365/474 atomic regions from SNP 109458 to 110058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:20,253 DEBUG Processing 326/1024 atomic regions from SNP 97673 to 98273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,280 DEBUG Processing 399/902 atomic regions from SNP 119430 to 120030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,301 DEBUG Processing 191/649 atomic regions from SNP 57190 to 57791 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,305 DEBUG Processing 408/859 atomic regions from SNP 122157 to 122757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,347 DEBUG Processing 302/1135 atomic regions from SNP 90372 to 90972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,409 DEBUG Processing 366/474 atomic regions from SNP 109758 to 110358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:20,528 DEBUG Processing 400/902 atomic regions from SNP 119730 to 120330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,531 DEBUG Processing 327/1024 atomic regions from SNP 97973 to 98573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,545 DEBUG Processing 192/649 atomic regions from SNP 57491 to 58092 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,552 DEBUG Processing 409/859 atomic regions from SNP 122457 to 123057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,654 DEBUG Processing 367/474 atomic regions from SNP 110058 to 110658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:20,664 DEBUG Processing 303/1135 atomic regions from SNP 90672 to 91272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,764 DEBUG Processing 401/902 atomic regions from SNP 120030 to 120630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,776 DEBUG Processing 193/649 atomic regions from SNP 57792 to 58393 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,791 DEBUG Processing 410/859 atomic regions from SNP 122757 to 123357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,796 DEBUG Processing 328/1024 atomic regions from SNP 98273 to 98873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,897 DEBUG Processing 368/474 atomic regions from SNP 110358 to 110958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:20,951 DEBUG Processing 304/1135 atomic regions from SNP 90972 to 91572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,006 DEBUG Processing 402/902 atomic regions from SNP 120330 to 120930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,013 DEBUG Processing 194/649 atomic regions from SNP 58093 to 58694 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,032 DEBUG Processing 411/859 atomic regions from SNP 123057 to 123657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,066 DEBUG Processing 329/1024 atomic regions from SNP 98573 to 99173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,160 DEBUG Processing 369/474 atomic regions from SNP 110658 to 111258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:21,226 DEBUG Processing 305/1135 atomic regions from SNP 91272 to 91872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,251 DEBUG Processing 195/649 atomic regions from SNP 58394 to 58995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,253 DEBUG Processing 403/902 atomic regions from SNP 120630 to 121230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,269 DEBUG Processing 412/859 atomic regions from SNP 123357 to 123957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,333 DEBUG Processing 330/1024 atomic regions from SNP 98873 to 99473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,412 DEBUG Processing 370/474 atomic regions from SNP 110958 to 111558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:21,494 DEBUG Processing 196/649 atomic regions from SNP 58695 to 59295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,503 DEBUG Processing 306/1135 atomic regions from SNP 91572 to 92172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,505 DEBUG Processing 404/902 atomic regions from SNP 120930 to 121530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,508 DEBUG Processing 413/859 atomic regions from SNP 123657 to 124257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,601 DEBUG Processing 331/1024 atomic regions from SNP 99173 to 99773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,641 DEBUG Processing 371/474 atomic regions from SNP 111258 to 111858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:21,736 DEBUG Processing 197/649 atomic regions from SNP 58995 to 59595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,749 DEBUG Processing 414/859 atomic regions from SNP 123957 to 124557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,755 DEBUG Processing 405/902 atomic regions from SNP 121230 to 121830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,781 DEBUG Processing 307/1135 atomic regions from SNP 91872 to 92472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,865 DEBUG Processing 372/474 atomic regions from SNP 111558 to 112158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:21,872 DEBUG Processing 332/1024 atomic regions from SNP 99473 to 100073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,974 DEBUG Processing 198/649 atomic regions from SNP 59295 to 59895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,991 DEBUG Processing 415/859 atomic regions from SNP 124257 to 124857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,004 DEBUG Processing 406/902 atomic regions from SNP 121530 to 122130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,059 DEBUG Processing 308/1135 atomic regions from SNP 92172 to 92772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,091 DEBUG Processing 373/474 atomic regions from SNP 111858 to 112458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:22,142 DEBUG Processing 333/1024 atomic regions from SNP 99773 to 100373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,210 DEBUG Processing 199/649 atomic regions from SNP 59595 to 60195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,228 DEBUG Processing 416/859 atomic regions from SNP 124557 to 125157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,248 DEBUG Processing 407/902 atomic regions from SNP 121830 to 122430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,317 DEBUG Processing 374/474 atomic regions from SNP 112158 to 112758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:22,335 DEBUG Processing 309/1135 atomic regions from SNP 92472 to 93072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,412 DEBUG Processing 334/1024 atomic regions from SNP 100073 to 100673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,450 DEBUG Processing 200/649 atomic regions from SNP 59895 to 60495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,466 DEBUG Processing 417/859 atomic regions from SNP 124857 to 125457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,494 DEBUG Processing 408/902 atomic regions from SNP 122130 to 122730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,543 DEBUG Processing 375/474 atomic regions from SNP 112458 to 113058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:22,611 DEBUG Processing 310/1135 atomic regions from SNP 92772 to 93372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,689 DEBUG Processing 335/1024 atomic regions from SNP 100373 to 100973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,698 DEBUG Processing 201/649 atomic regions from SNP 60195 to 60795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,714 DEBUG Processing 418/859 atomic regions from SNP 125157 to 125757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,746 DEBUG Processing 409/902 atomic regions from SNP 122430 to 123030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,773 DEBUG Processing 376/474 atomic regions from SNP 112758 to 113358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:22,881 DEBUG Processing 311/1135 atomic regions from SNP 93072 to 93672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,942 DEBUG Processing 202/649 atomic regions from SNP 60495 to 61095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,963 DEBUG Processing 419/859 atomic regions from SNP 125457 to 126057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,964 DEBUG Processing 336/1024 atomic regions from SNP 100673 to 101273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,999 DEBUG Processing 410/902 atomic regions from SNP 122730 to 123330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,008 DEBUG Processing 377/474 atomic regions from SNP 113058 to 113658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:23,155 DEBUG Processing 312/1135 atomic regions from SNP 93372 to 93972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,186 DEBUG Processing 203/649 atomic regions from SNP 60795 to 61395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,214 DEBUG Processing 420/859 atomic regions from SNP 125757 to 126357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,253 DEBUG Processing 337/1024 atomic regions from SNP 100973 to 101573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,254 DEBUG Processing 378/474 atomic regions from SNP 113358 to 113958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:23,258 DEBUG Processing 411/902 atomic regions from SNP 123030 to 123630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,421 DEBUG Processing 204/649 atomic regions from SNP 61095 to 61695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,428 DEBUG Processing 313/1135 atomic regions from SNP 93672 to 94272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,463 DEBUG Processing 421/859 atomic regions from SNP 126057 to 126657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,501 DEBUG Processing 379/474 atomic regions from SNP 113658 to 114258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:23,518 DEBUG Processing 412/902 atomic regions from SNP 123330 to 123930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,531 DEBUG Processing 338/1024 atomic regions from SNP 101273 to 101873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,652 DEBUG Processing 205/649 atomic regions from SNP 61395 to 61995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,708 DEBUG Processing 422/859 atomic regions from SNP 126357 to 126957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,709 DEBUG Processing 314/1135 atomic regions from SNP 93972 to 94572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,741 DEBUG Processing 380/474 atomic regions from SNP 113958 to 114558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:23,773 DEBUG Processing 413/902 atomic regions from SNP 123630 to 124230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,801 DEBUG Processing 339/1024 atomic regions from SNP 101573 to 102173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,874 DEBUG Processing 206/649 atomic regions from SNP 61695 to 62295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,964 DEBUG Processing 423/859 atomic regions from SNP 126657 to 127257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,975 DEBUG Processing 381/474 atomic regions from SNP 114258 to 114858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:23,984 DEBUG Processing 315/1135 atomic regions from SNP 94272 to 94872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,027 DEBUG Processing 414/902 atomic regions from SNP 123930 to 124530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,067 DEBUG Processing 340/1024 atomic regions from SNP 101873 to 102473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,103 DEBUG Processing 207/649 atomic regions from SNP 61995 to 62595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,201 DEBUG Processing 382/474 atomic regions from SNP 114558 to 115158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:24,229 DEBUG Processing 424/859 atomic regions from SNP 126957 to 127557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,259 DEBUG Processing 316/1135 atomic regions from SNP 94572 to 95172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,278 DEBUG Processing 415/902 atomic regions from SNP 124230 to 124830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,334 DEBUG Processing 341/1024 atomic regions from SNP 102173 to 102773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,342 DEBUG Processing 208/649 atomic regions from SNP 62295 to 62895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,449 DEBUG Processing 383/474 atomic regions from SNP 114858 to 115458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:24,491 DEBUG Processing 425/859 atomic regions from SNP 127257 to 127857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,527 DEBUG Processing 416/902 atomic regions from SNP 124530 to 125130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,535 DEBUG Processing 317/1135 atomic regions from SNP 94872 to 95472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,578 DEBUG Processing 209/649 atomic regions from SNP 62595 to 63195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,602 DEBUG Processing 342/1024 atomic regions from SNP 102473 to 103073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,694 DEBUG Processing 384/474 atomic regions from SNP 115158 to 115758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:24,747 DEBUG Processing 426/859 atomic regions from SNP 127557 to 128157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,773 DEBUG Processing 417/902 atomic regions from SNP 124830 to 125430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,810 DEBUG Processing 210/649 atomic regions from SNP 62895 to 63495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,813 DEBUG Processing 318/1135 atomic regions from SNP 95172 to 95772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,867 DEBUG Processing 343/1024 atomic regions from SNP 102773 to 103373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,926 DEBUG Processing 385/474 atomic regions from SNP 115458 to 116058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:24,986 DEBUG Processing 427/859 atomic regions from SNP 127857 to 128457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,018 DEBUG Processing 418/902 atomic regions from SNP 125130 to 125730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,040 DEBUG Processing 211/649 atomic regions from SNP 63195 to 63795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,088 DEBUG Processing 319/1135 atomic regions from SNP 95472 to 96072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,130 DEBUG Processing 344/1024 atomic regions from SNP 103073 to 103673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,154 DEBUG Processing 386/474 atomic regions from SNP 115758 to 116358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:25,223 DEBUG Processing 428/859 atomic regions from SNP 128157 to 128757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,268 DEBUG Processing 419/902 atomic regions from SNP 125430 to 126030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,274 DEBUG Processing 212/649 atomic regions from SNP 63495 to 64095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,359 DEBUG Processing 320/1135 atomic regions from SNP 95772 to 96372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,375 DEBUG Processing 387/474 atomic regions from SNP 116058 to 116658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:25,397 DEBUG Processing 345/1024 atomic regions from SNP 103373 to 103973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,465 DEBUG Processing 429/859 atomic regions from SNP 128457 to 129057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,518 DEBUG Processing 213/649 atomic regions from SNP 63795 to 64395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,519 DEBUG Processing 420/902 atomic regions from SNP 125730 to 126330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,589 DEBUG Processing 388/474 atomic regions from SNP 116358 to 116958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:25,631 DEBUG Processing 321/1135 atomic regions from SNP 96072 to 96672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,662 DEBUG Processing 346/1024 atomic regions from SNP 103673 to 104273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,706 DEBUG Processing 430/859 atomic regions from SNP 128757 to 129357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,767 DEBUG Processing 214/649 atomic regions from SNP 64095 to 64695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,775 DEBUG Processing 421/902 atomic regions from SNP 126030 to 126630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,816 DEBUG Processing 389/474 atomic regions from SNP 116658 to 117258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:25,911 DEBUG Processing 322/1135 atomic regions from SNP 96372 to 96972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,936 DEBUG Processing 347/1024 atomic regions from SNP 103973 to 104573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,956 DEBUG Processing 431/859 atomic regions from SNP 129057 to 129657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,019 DEBUG Processing 215/649 atomic regions from SNP 64395 to 64995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,039 DEBUG Processing 422/902 atomic regions from SNP 126330 to 126930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,058 DEBUG Processing 390/474 atomic regions from SNP 116958 to 117558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:26,194 DEBUG Processing 432/859 atomic regions from SNP 129357 to 129957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,202 DEBUG Processing 348/1024 atomic regions from SNP 104273 to 104873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,208 DEBUG Processing 323/1135 atomic regions from SNP 96672 to 97272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,262 DEBUG Processing 216/649 atomic regions from SNP 64695 to 65295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,293 DEBUG Processing 423/902 atomic regions from SNP 126630 to 127230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,298 DEBUG Processing 391/474 atomic regions from SNP 117258 to 117858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:26,432 DEBUG Processing 433/859 atomic regions from SNP 129657 to 130257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,470 DEBUG Processing 349/1024 atomic regions from SNP 104573 to 105173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,493 DEBUG Processing 324/1135 atomic regions from SNP 96972 to 97572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,498 DEBUG Processing 217/649 atomic regions from SNP 64995 to 65595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,538 DEBUG Processing 392/474 atomic regions from SNP 117558 to 118158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:26,545 DEBUG Processing 424/902 atomic regions from SNP 126930 to 127530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,668 DEBUG Processing 434/859 atomic regions from SNP 129957 to 130557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,729 DEBUG Processing 218/649 atomic regions from SNP 65295 to 65895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,735 DEBUG Processing 350/1024 atomic regions from SNP 104873 to 105473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,774 DEBUG Processing 325/1135 atomic regions from SNP 97272 to 97872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,776 DEBUG Processing 393/474 atomic regions from SNP 117858 to 118458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:26,793 DEBUG Processing 425/902 atomic regions from SNP 127230 to 127830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,904 DEBUG Processing 435/859 atomic regions from SNP 130257 to 130857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,961 DEBUG Processing 219/649 atomic regions from SNP 65595 to 66195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,997 DEBUG Processing 351/1024 atomic regions from SNP 105173 to 105773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,004 DEBUG Processing 394/474 atomic regions from SNP 118158 to 118758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:27,037 DEBUG Processing 426/902 atomic regions from SNP 127530 to 128130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,058 DEBUG Processing 326/1135 atomic regions from SNP 97572 to 98172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,144 DEBUG Processing 436/859 atomic regions from SNP 130557 to 131157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,194 DEBUG Processing 220/649 atomic regions from SNP 65895 to 66495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,232 DEBUG Processing 395/474 atomic regions from SNP 118458 to 119058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:27,265 DEBUG Processing 352/1024 atomic regions from SNP 105473 to 106073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,283 DEBUG Processing 427/902 atomic regions from SNP 127830 to 128430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,349 DEBUG Processing 327/1135 atomic regions from SNP 97872 to 98472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,382 DEBUG Processing 437/859 atomic regions from SNP 130857 to 131457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,433 DEBUG Processing 221/649 atomic regions from SNP 66195 to 66795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,464 DEBUG Processing 396/474 atomic regions from SNP 118758 to 119358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:27,527 DEBUG Processing 428/902 atomic regions from SNP 128130 to 128730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,534 DEBUG Processing 353/1024 atomic regions from SNP 105773 to 106373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,618 DEBUG Processing 438/859 atomic regions from SNP 131157 to 131757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,652 DEBUG Processing 328/1135 atomic regions from SNP 98172 to 98772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,669 DEBUG Processing 222/649 atomic regions from SNP 66495 to 67095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,697 DEBUG Processing 397/474 atomic regions from SNP 119058 to 119658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:27,775 DEBUG Processing 429/902 atomic regions from SNP 128430 to 129030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,807 DEBUG Processing 354/1024 atomic regions from SNP 106073 to 106673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,854 DEBUG Processing 439/859 atomic regions from SNP 131457 to 132057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,897 DEBUG Processing 223/649 atomic regions from SNP 66795 to 67395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,922 DEBUG Processing 398/474 atomic regions from SNP 119358 to 119958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:27,946 DEBUG Processing 329/1135 atomic regions from SNP 98472 to 99072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,025 DEBUG Processing 430/902 atomic regions from SNP 128730 to 129330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,079 DEBUG Processing 355/1024 atomic regions from SNP 106373 to 106973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,092 DEBUG Processing 440/859 atomic regions from SNP 131757 to 132357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,127 DEBUG Processing 224/649 atomic regions from SNP 67095 to 67695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,146 DEBUG Processing 399/474 atomic regions from SNP 119658 to 120258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:28,241 DEBUG Processing 330/1135 atomic regions from SNP 98772 to 99372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,274 DEBUG Processing 431/902 atomic regions from SNP 129030 to 129630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,337 DEBUG Processing 441/859 atomic regions from SNP 132057 to 132657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,356 DEBUG Processing 356/1024 atomic regions from SNP 106673 to 107273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,367 DEBUG Processing 225/649 atomic regions from SNP 67395 to 67995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,375 DEBUG Processing 400/474 atomic regions from SNP 119958 to 120558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:28,517 DEBUG Processing 432/902 atomic regions from SNP 129330 to 129930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,531 DEBUG Processing 331/1135 atomic regions from SNP 99072 to 99672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,585 DEBUG Processing 442/859 atomic regions from SNP 132357 to 132957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,609 DEBUG Processing 226/649 atomic regions from SNP 67695 to 68295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,610 DEBUG Processing 401/474 atomic regions from SNP 120258 to 120858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:28,629 DEBUG Processing 357/1024 atomic regions from SNP 106973 to 107573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,778 DEBUG Processing 433/902 atomic regions from SNP 129630 to 130230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,826 DEBUG Processing 332/1135 atomic regions from SNP 99372 to 99972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,836 DEBUG Processing 443/859 atomic regions from SNP 132657 to 133257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,846 DEBUG Processing 402/474 atomic regions from SNP 120558 to 121158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:28,851 DEBUG Processing 227/649 atomic regions from SNP 67995 to 68595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,903 DEBUG Processing 358/1024 atomic regions from SNP 107273 to 107873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,045 DEBUG Processing 434/902 atomic regions from SNP 129930 to 130530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,076 DEBUG Processing 403/474 atomic regions from SNP 120858 to 121458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:29,079 DEBUG Processing 444/859 atomic regions from SNP 132957 to 133557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,088 DEBUG Processing 228/649 atomic regions from SNP 68295 to 68895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,128 DEBUG Processing 333/1135 atomic regions from SNP 99672 to 100272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,180 DEBUG Processing 359/1024 atomic regions from SNP 107573 to 108173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,297 DEBUG Processing 435/902 atomic regions from SNP 130230 to 130830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,312 DEBUG Processing 404/474 atomic regions from SNP 121158 to 121758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:29,322 DEBUG Processing 445/859 atomic regions from SNP 133257 to 133857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,328 DEBUG Processing 229/649 atomic regions from SNP 68595 to 69195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,425 DEBUG Processing 334/1135 atomic regions from SNP 99972 to 100572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,461 DEBUG Processing 360/1024 atomic regions from SNP 107873 to 108473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,551 DEBUG Processing 405/474 atomic regions from SNP 121458 to 122058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:29,555 DEBUG Processing 436/902 atomic regions from SNP 130530 to 131130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,560 DEBUG Processing 446/859 atomic regions from SNP 133557 to 134157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,569 DEBUG Processing 230/649 atomic regions from SNP 68895 to 69495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,699 DEBUG Processing 335/1135 atomic regions from SNP 100272 to 100872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,739 DEBUG Processing 361/1024 atomic regions from SNP 108173 to 108773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,795 DEBUG Processing 406/474 atomic regions from SNP 121758 to 122358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:29,802 DEBUG Processing 447/859 atomic regions from SNP 133857 to 134457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,809 DEBUG Processing 437/902 atomic regions from SNP 130830 to 131430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,815 DEBUG Processing 231/649 atomic regions from SNP 69195 to 69795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,978 DEBUG Processing 336/1135 atomic regions from SNP 100572 to 101172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,023 DEBUG Processing 362/1024 atomic regions from SNP 108473 to 109073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,032 DEBUG Processing 407/474 atomic regions from SNP 122058 to 122658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:30,051 DEBUG Processing 448/859 atomic regions from SNP 134157 to 134757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,061 DEBUG Processing 232/649 atomic regions from SNP 69495 to 70095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,064 DEBUG Processing 438/902 atomic regions from SNP 131130 to 131730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,264 DEBUG Processing 337/1135 atomic regions from SNP 100872 to 101472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,273 DEBUG Processing 408/474 atomic regions from SNP 122358 to 122958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:30,310 DEBUG Processing 449/859 atomic regions from SNP 134457 to 135057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,313 DEBUG Processing 363/1024 atomic regions from SNP 108773 to 109373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,317 DEBUG Processing 233/649 atomic regions from SNP 69795 to 70395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,328 DEBUG Processing 439/902 atomic regions from SNP 131430 to 132030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,502 DEBUG Processing 409/474 atomic regions from SNP 122658 to 123258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:30,551 DEBUG Processing 338/1135 atomic regions from SNP 101172 to 101772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,564 DEBUG Processing 234/649 atomic regions from SNP 70095 to 70695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,571 DEBUG Processing 450/859 atomic regions from SNP 134757 to 135357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,588 DEBUG Processing 440/902 atomic regions from SNP 131730 to 132330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,604 DEBUG Processing 364/1024 atomic regions from SNP 109073 to 109673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,741 DEBUG Processing 410/474 atomic regions from SNP 122958 to 123558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:30,814 DEBUG Processing 235/649 atomic regions from SNP 70395 to 70995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,821 DEBUG Processing 451/859 atomic regions from SNP 135057 to 135657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,835 DEBUG Processing 339/1135 atomic regions from SNP 101472 to 102072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,846 DEBUG Processing 441/902 atomic regions from SNP 132030 to 132630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,884 DEBUG Processing 365/1024 atomic regions from SNP 109373 to 109973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,963 DEBUG Processing 411/474 atomic regions from SNP 123258 to 123858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:31,047 DEBUG Processing 236/649 atomic regions from SNP 70695 to 71295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,065 DEBUG Processing 452/859 atomic regions from SNP 135357 to 135957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,098 DEBUG Processing 442/902 atomic regions from SNP 132330 to 132930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,114 DEBUG Processing 340/1135 atomic regions from SNP 101772 to 102372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,158 DEBUG Processing 366/1024 atomic regions from SNP 109673 to 110273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,188 DEBUG Processing 412/474 atomic regions from SNP 123558 to 124158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:31,276 DEBUG Processing 237/649 atomic regions from SNP 70995 to 71595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,305 DEBUG Processing 453/859 atomic regions from SNP 135657 to 136257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,351 DEBUG Processing 443/902 atomic regions from SNP 132630 to 133230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,395 DEBUG Processing 341/1135 atomic regions from SNP 102072 to 102672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,420 DEBUG Processing 413/474 atomic regions from SNP 123858 to 124458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:31,433 DEBUG Processing 367/1024 atomic regions from SNP 109973 to 110573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,504 DEBUG Processing 238/649 atomic regions from SNP 71295 to 71895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,547 DEBUG Processing 454/859 atomic regions from SNP 135957 to 136557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,606 DEBUG Processing 444/902 atomic regions from SNP 132930 to 133530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,673 DEBUG Processing 414/474 atomic regions from SNP 124158 to 124758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:31,688 DEBUG Processing 342/1135 atomic regions from SNP 102372 to 102972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,718 DEBUG Processing 368/1024 atomic regions from SNP 110273 to 110873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,746 DEBUG Processing 239/649 atomic regions from SNP 71595 to 72195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,797 DEBUG Processing 455/859 atomic regions from SNP 136257 to 136857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,856 DEBUG Processing 445/902 atomic regions from SNP 133230 to 133830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,906 DEBUG Processing 415/474 atomic regions from SNP 124458 to 125058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:31,965 DEBUG Processing 343/1135 atomic regions from SNP 102672 to 103272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,980 DEBUG Processing 240/649 atomic regions from SNP 71895 to 72495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,988 DEBUG Processing 369/1024 atomic regions from SNP 110573 to 111173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,041 DEBUG Processing 456/859 atomic regions from SNP 136557 to 137157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,100 DEBUG Processing 446/902 atomic regions from SNP 133530 to 134130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,134 DEBUG Processing 416/474 atomic regions from SNP 124758 to 125358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:32,212 DEBUG Processing 241/649 atomic regions from SNP 72195 to 72795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,240 DEBUG Processing 344/1135 atomic regions from SNP 102972 to 103572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,258 DEBUG Processing 370/1024 atomic regions from SNP 110873 to 111473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,289 DEBUG Processing 457/859 atomic regions from SNP 136857 to 137457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,350 DEBUG Processing 447/902 atomic regions from SNP 133830 to 134430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,365 DEBUG Processing 417/474 atomic regions from SNP 125058 to 125658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:32,443 DEBUG Processing 242/649 atomic regions from SNP 72495 to 73095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,521 DEBUG Processing 345/1135 atomic regions from SNP 103272 to 103872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,537 DEBUG Processing 371/1024 atomic regions from SNP 111173 to 111773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,546 DEBUG Processing 458/859 atomic regions from SNP 137157 to 137757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,608 DEBUG Processing 418/474 atomic regions from SNP 125358 to 125958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:32,608 DEBUG Processing 448/902 atomic regions from SNP 134130 to 134730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,678 DEBUG Processing 243/649 atomic regions from SNP 72795 to 73395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,801 DEBUG Processing 459/859 atomic regions from SNP 137457 to 138057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,801 DEBUG Processing 346/1135 atomic regions from SNP 103572 to 104172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,816 DEBUG Processing 372/1024 atomic regions from SNP 111473 to 112073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,850 DEBUG Processing 419/474 atomic regions from SNP 125658 to 126258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:32,862 DEBUG Processing 449/902 atomic regions from SNP 134430 to 135030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,919 DEBUG Processing 244/649 atomic regions from SNP 73095 to 73695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,053 DEBUG Processing 460/859 atomic regions from SNP 137757 to 138357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,089 DEBUG Processing 420/474 atomic regions from SNP 125958 to 126558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:33,090 DEBUG Processing 347/1135 atomic regions from SNP 103872 to 104472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,099 DEBUG Processing 373/1024 atomic regions from SNP 111773 to 112373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,118 DEBUG Processing 450/902 atomic regions from SNP 134730 to 135330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,164 DEBUG Processing 245/649 atomic regions from SNP 73395 to 73995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,295 DEBUG Processing 461/859 atomic regions from SNP 138057 to 138657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,320 DEBUG Processing 421/474 atomic regions from SNP 126258 to 126858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:33,371 DEBUG Processing 451/902 atomic regions from SNP 135030 to 135630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,380 DEBUG Processing 348/1135 atomic regions from SNP 104172 to 104772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,388 DEBUG Processing 374/1024 atomic regions from SNP 112073 to 112673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,431 DEBUG Processing 246/649 atomic regions from SNP 73695 to 74295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,529 DEBUG Processing 462/859 atomic regions from SNP 138357 to 138957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,543 DEBUG Processing 422/474 atomic regions from SNP 126558 to 127158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:33,620 DEBUG Processing 452/902 atomic regions from SNP 135330 to 135930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,671 DEBUG Processing 375/1024 atomic regions from SNP 112373 to 112973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,691 DEBUG Processing 349/1135 atomic regions from SNP 104472 to 105072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,695 DEBUG Processing 247/649 atomic regions from SNP 73995 to 74595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,768 DEBUG Processing 463/859 atomic regions from SNP 138657 to 139257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,769 DEBUG Processing 423/474 atomic regions from SNP 126858 to 127458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:33,865 DEBUG Processing 453/902 atomic regions from SNP 135630 to 136230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,948 DEBUG Processing 248/649 atomic regions from SNP 74295 to 74895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,951 DEBUG Processing 376/1024 atomic regions from SNP 112673 to 113273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,005 DEBUG Processing 424/474 atomic regions from SNP 127158 to 127758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:34,018 DEBUG Processing 350/1135 atomic regions from SNP 104772 to 105372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,027 DEBUG Processing 464/859 atomic regions from SNP 138957 to 139557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,116 DEBUG Processing 454/902 atomic regions from SNP 135930 to 136530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,200 DEBUG Processing 249/649 atomic regions from SNP 74595 to 75195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,236 DEBUG Processing 377/1024 atomic regions from SNP 112973 to 113573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,241 DEBUG Processing 425/474 atomic regions from SNP 127458 to 128058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:34,283 DEBUG Processing 465/859 atomic regions from SNP 139257 to 139857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,331 DEBUG Processing 351/1135 atomic regions from SNP 105072 to 105672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,356 DEBUG Processing 455/902 atomic regions from SNP 136230 to 136830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,441 DEBUG Processing 250/649 atomic regions from SNP 74895 to 75495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,477 DEBUG Processing 426/474 atomic regions from SNP 127758 to 128358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:34,510 DEBUG Processing 378/1024 atomic regions from SNP 113273 to 113873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,542 DEBUG Processing 466/859 atomic regions from SNP 139557 to 140157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,600 DEBUG Processing 456/902 atomic regions from SNP 136530 to 137130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,650 DEBUG Processing 352/1135 atomic regions from SNP 105372 to 105972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,685 DEBUG Processing 251/649 atomic regions from SNP 75195 to 75795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,714 DEBUG Processing 427/474 atomic regions from SNP 128058 to 128658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:34,783 DEBUG Processing 379/1024 atomic regions from SNP 113573 to 114173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,793 DEBUG Processing 467/859 atomic regions from SNP 139857 to 140457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,848 DEBUG Processing 457/902 atomic regions from SNP 136830 to 137430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,922 DEBUG Processing 252/649 atomic regions from SNP 75495 to 76095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,935 DEBUG Processing 353/1135 atomic regions from SNP 105672 to 106272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,949 DEBUG Processing 428/474 atomic regions from SNP 128358 to 128958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:35,044 DEBUG Processing 468/859 atomic regions from SNP 140157 to 140757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,056 DEBUG Processing 380/1024 atomic regions from SNP 113873 to 114473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,091 DEBUG Processing 458/902 atomic regions from SNP 137130 to 137730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,160 DEBUG Processing 253/649 atomic regions from SNP 75795 to 76395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,182 DEBUG Processing 429/474 atomic regions from SNP 128658 to 129258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:35,217 DEBUG Processing 354/1135 atomic regions from SNP 105972 to 106572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,295 DEBUG Processing 469/859 atomic regions from SNP 140457 to 141057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,333 DEBUG Processing 381/1024 atomic regions from SNP 114173 to 114773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,336 DEBUG Processing 459/902 atomic regions from SNP 137430 to 138030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,401 DEBUG Processing 254/649 atomic regions from SNP 76095 to 76695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,415 DEBUG Processing 430/474 atomic regions from SNP 128958 to 129558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:35,501 DEBUG Processing 355/1135 atomic regions from SNP 106272 to 106872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,549 DEBUG Processing 470/859 atomic regions from SNP 140757 to 141357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,598 DEBUG Processing 460/902 atomic regions from SNP 137730 to 138330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,609 DEBUG Processing 382/1024 atomic regions from SNP 114473 to 115073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,642 DEBUG Processing 255/649 atomic regions from SNP 76395 to 76995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,651 DEBUG Processing 431/474 atomic regions from SNP 129258 to 129858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:35,784 DEBUG Processing 356/1135 atomic regions from SNP 106572 to 107172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,800 DEBUG Processing 471/859 atomic regions from SNP 141057 to 141657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,868 DEBUG Processing 461/902 atomic regions from SNP 138030 to 138630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,883 DEBUG Processing 383/1024 atomic regions from SNP 114773 to 115373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,886 DEBUG Processing 256/649 atomic regions from SNP 76695 to 77295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,889 DEBUG Processing 432/474 atomic regions from SNP 129558 to 130158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:36,053 DEBUG Processing 472/859 atomic regions from SNP 141357 to 141957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,069 DEBUG Processing 357/1135 atomic regions from SNP 106872 to 107472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,136 DEBUG Processing 433/474 atomic regions from SNP 129858 to 130458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:36,136 DEBUG Processing 257/649 atomic regions from SNP 76995 to 77595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,154 DEBUG Processing 462/902 atomic regions from SNP 138330 to 138930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,158 DEBUG Processing 384/1024 atomic regions from SNP 115073 to 115673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,299 DEBUG Processing 473/859 atomic regions from SNP 141657 to 142257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,376 DEBUG Processing 358/1135 atomic regions from SNP 107172 to 107772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,378 DEBUG Processing 434/474 atomic regions from SNP 130158 to 130758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:36,385 DEBUG Processing 258/649 atomic regions from SNP 77295 to 77895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,431 DEBUG Processing 385/1024 atomic regions from SNP 115373 to 115973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,435 DEBUG Processing 463/902 atomic regions from SNP 138630 to 139230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,541 DEBUG Processing 474/859 atomic regions from SNP 141957 to 142557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,617 DEBUG Processing 435/474 atomic regions from SNP 130458 to 131058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:36,629 DEBUG Processing 259/649 atomic regions from SNP 77595 to 78195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,662 DEBUG Processing 359/1135 atomic regions from SNP 107472 to 108072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,705 DEBUG Processing 386/1024 atomic regions from SNP 115673 to 116273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,706 DEBUG Processing 464/902 atomic regions from SNP 138930 to 139530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,785 DEBUG Processing 475/859 atomic regions from SNP 142257 to 142857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,850 DEBUG Processing 436/474 atomic regions from SNP 130758 to 131358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:36,869 DEBUG Processing 260/649 atomic regions from SNP 77895 to 78495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,942 DEBUG Processing 360/1135 atomic regions from SNP 107772 to 108372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,958 DEBUG Processing 465/902 atomic regions from SNP 139230 to 139830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,982 DEBUG Processing 387/1024 atomic regions from SNP 115973 to 116573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,031 DEBUG Processing 476/859 atomic regions from SNP 142557 to 143157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,086 DEBUG Processing 437/474 atomic regions from SNP 131058 to 131658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:37,112 DEBUG Processing 261/649 atomic regions from SNP 78195 to 78795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,203 DEBUG Processing 466/902 atomic regions from SNP 139530 to 140130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,253 DEBUG Processing 361/1135 atomic regions from SNP 108072 to 108672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,258 DEBUG Processing 388/1024 atomic regions from SNP 116273 to 116873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,282 DEBUG Processing 477/859 atomic regions from SNP 142857 to 143457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,327 DEBUG Processing 438/474 atomic regions from SNP 131358 to 131958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:37,354 DEBUG Processing 262/649 atomic regions from SNP 78495 to 79095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,445 DEBUG Processing 467/902 atomic regions from SNP 139830 to 140430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,533 DEBUG Processing 478/859 atomic regions from SNP 143157 to 143757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,534 DEBUG Processing 389/1024 atomic regions from SNP 116573 to 117173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,565 DEBUG Processing 362/1135 atomic regions from SNP 108372 to 108972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,568 DEBUG Processing 439/474 atomic regions from SNP 131658 to 132258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:37,604 DEBUG Processing 263/649 atomic regions from SNP 78795 to 79395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,687 DEBUG Processing 468/902 atomic regions from SNP 140130 to 140730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,778 DEBUG Processing 479/859 atomic regions from SNP 143457 to 144057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,807 DEBUG Processing 390/1024 atomic regions from SNP 116873 to 117473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,810 DEBUG Processing 440/474 atomic regions from SNP 131958 to 132558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:37,856 DEBUG Processing 363/1135 atomic regions from SNP 108672 to 109272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,859 DEBUG Processing 264/649 atomic regions from SNP 79095 to 79695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,943 DEBUG Processing 469/902 atomic regions from SNP 140430 to 141030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,017 DEBUG Processing 480/859 atomic regions from SNP 143757 to 144357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,045 DEBUG Processing 441/474 atomic regions from SNP 132258 to 132858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:38,075 DEBUG Processing 391/1024 atomic regions from SNP 117173 to 117773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,106 DEBUG Processing 265/649 atomic regions from SNP 79395 to 79995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,164 DEBUG Processing 364/1135 atomic regions from SNP 108972 to 109572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,227 DEBUG Processing 470/902 atomic regions from SNP 140730 to 141330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,251 DEBUG Processing 481/859 atomic regions from SNP 144057 to 144657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,275 DEBUG Processing 442/474 atomic regions from SNP 132558 to 133158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:38,341 DEBUG Processing 392/1024 atomic regions from SNP 117473 to 118073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,346 DEBUG Processing 266/649 atomic regions from SNP 79695 to 80295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,469 DEBUG Processing 365/1135 atomic regions from SNP 109272 to 109872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,492 DEBUG Processing 482/859 atomic regions from SNP 144357 to 144957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,510 DEBUG Processing 443/474 atomic regions from SNP 132858 to 133458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:38,512 DEBUG Processing 471/902 atomic regions from SNP 141030 to 141630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,590 DEBUG Processing 267/649 atomic regions from SNP 79995 to 80595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,611 DEBUG Processing 393/1024 atomic regions from SNP 117773 to 118373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,736 DEBUG Processing 483/859 atomic regions from SNP 144657 to 145257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,748 DEBUG Processing 366/1135 atomic regions from SNP 109572 to 110172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,749 DEBUG Processing 444/474 atomic regions from SNP 133158 to 133758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:38,799 DEBUG Processing 472/902 atomic regions from SNP 141330 to 141930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,837 DEBUG Processing 268/649 atomic regions from SNP 80295 to 80895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,878 DEBUG Processing 394/1024 atomic regions from SNP 118073 to 118673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,983 DEBUG Processing 484/859 atomic regions from SNP 144957 to 145557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,990 DEBUG Processing 445/474 atomic regions from SNP 133458 to 134058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:39,032 DEBUG Processing 367/1135 atomic regions from SNP 109872 to 110472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,090 DEBUG Processing 269/649 atomic regions from SNP 80595 to 81195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,092 DEBUG Processing 473/902 atomic regions from SNP 141630 to 142230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,147 DEBUG Processing 395/1024 atomic regions from SNP 118373 to 118973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,219 DEBUG Processing 485/859 atomic regions from SNP 145257 to 145857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,221 DEBUG Processing 446/474 atomic regions from SNP 133758 to 134358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:39,310 DEBUG Processing 368/1135 atomic regions from SNP 110172 to 110772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,340 DEBUG Processing 270/649 atomic regions from SNP 80895 to 81495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,377 DEBUG Processing 474/902 atomic regions from SNP 141930 to 142530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,424 DEBUG Processing 396/1024 atomic regions from SNP 118673 to 119273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,450 DEBUG Processing 447/474 atomic regions from SNP 134058 to 134658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:39,458 DEBUG Processing 486/859 atomic regions from SNP 145557 to 146157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,592 DEBUG Processing 271/649 atomic regions from SNP 81195 to 81795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,597 DEBUG Processing 369/1135 atomic regions from SNP 110472 to 111072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,656 DEBUG Processing 475/902 atomic regions from SNP 142230 to 142830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,685 DEBUG Processing 448/474 atomic regions from SNP 134358 to 134958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:39,699 DEBUG Processing 487/859 atomic regions from SNP 145857 to 146457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,716 DEBUG Processing 397/1024 atomic regions from SNP 118973 to 119573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,844 DEBUG Processing 272/649 atomic regions from SNP 81495 to 82095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,883 DEBUG Processing 370/1135 atomic regions from SNP 110772 to 111372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,924 DEBUG Processing 449/474 atomic regions from SNP 134658 to 135258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:39,939 DEBUG Processing 476/902 atomic regions from SNP 142530 to 143130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,947 DEBUG Processing 488/859 atomic regions from SNP 146157 to 146757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,006 DEBUG Processing 398/1024 atomic regions from SNP 119273 to 119873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,085 DEBUG Processing 273/649 atomic regions from SNP 81795 to 82395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,167 DEBUG Processing 450/474 atomic regions from SNP 134958 to 135558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:40,170 DEBUG Processing 371/1135 atomic regions from SNP 111072 to 111672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,213 DEBUG Processing 489/859 atomic regions from SNP 146457 to 147057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,221 DEBUG Processing 477/902 atomic regions from SNP 142830 to 143430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,271 DEBUG Processing 399/1024 atomic regions from SNP 119573 to 120173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,323 DEBUG Processing 274/649 atomic regions from SNP 82095 to 82695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,411 DEBUG Processing 451/474 atomic regions from SNP 135258 to 135858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:40,453 DEBUG Processing 372/1135 atomic regions from SNP 111372 to 111972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,464 DEBUG Processing 490/859 atomic regions from SNP 146757 to 147357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,491 DEBUG Processing 478/902 atomic regions from SNP 143130 to 143730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,552 DEBUG Processing 400/1024 atomic regions from SNP 119873 to 120473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,558 DEBUG Processing 275/649 atomic regions from SNP 82395 to 82995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,649 DEBUG Processing 452/474 atomic regions from SNP 135558 to 136158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:40,712 DEBUG Processing 491/859 atomic regions from SNP 147057 to 147657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,736 DEBUG Processing 373/1135 atomic regions from SNP 111672 to 112272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,750 DEBUG Processing 479/902 atomic regions from SNP 143430 to 144030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,805 DEBUG Processing 276/649 atomic regions from SNP 82695 to 83295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,840 DEBUG Processing 401/1024 atomic regions from SNP 120173 to 120773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,884 DEBUG Processing 453/474 atomic regions from SNP 135858 to 136458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:40,954 DEBUG Processing 492/859 atomic regions from SNP 147357 to 147957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,016 DEBUG Processing 480/902 atomic regions from SNP 143730 to 144330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,029 DEBUG Processing 374/1135 atomic regions from SNP 111972 to 112572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,054 DEBUG Processing 277/649 atomic regions from SNP 82995 to 83595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,113 DEBUG Processing 454/474 atomic regions from SNP 136158 to 136758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:41,119 DEBUG Processing 402/1024 atomic regions from SNP 120473 to 121073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,194 DEBUG Processing 493/859 atomic regions from SNP 147657 to 148257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,283 DEBUG Processing 481/902 atomic regions from SNP 144030 to 144630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,305 DEBUG Processing 278/649 atomic regions from SNP 83295 to 83895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,306 DEBUG Processing 375/1135 atomic regions from SNP 112272 to 112872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,355 DEBUG Processing 455/474 atomic regions from SNP 136458 to 137058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:41,401 DEBUG Processing 403/1024 atomic regions from SNP 120773 to 121373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,443 DEBUG Processing 494/859 atomic regions from SNP 147957 to 148557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,560 DEBUG Processing 482/902 atomic regions from SNP 144330 to 144930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,561 DEBUG Processing 279/649 atomic regions from SNP 83595 to 84195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,584 DEBUG Processing 376/1135 atomic regions from SNP 112572 to 113172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,606 DEBUG Processing 456/474 atomic regions from SNP 136758 to 137358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:41,686 DEBUG Processing 404/1024 atomic regions from SNP 121073 to 121673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,691 DEBUG Processing 495/859 atomic regions from SNP 148257 to 148857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,800 DEBUG Processing 280/649 atomic regions from SNP 83895 to 84495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,836 DEBUG Processing 483/902 atomic regions from SNP 144630 to 145230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,853 DEBUG Processing 457/474 atomic regions from SNP 137058 to 137658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:41,855 DEBUG Processing 377/1135 atomic regions from SNP 112872 to 113472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,944 DEBUG Processing 496/859 atomic regions from SNP 148557 to 149157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,970 DEBUG Processing 405/1024 atomic regions from SNP 121373 to 121973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,032 DEBUG Processing 281/649 atomic regions from SNP 84195 to 84795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,085 DEBUG Processing 458/474 atomic regions from SNP 137358 to 137958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:42,119 DEBUG Processing 484/902 atomic regions from SNP 144930 to 145530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,127 DEBUG Processing 378/1135 atomic regions from SNP 113172 to 113772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,200 DEBUG Processing 497/859 atomic regions from SNP 148857 to 149457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,248 DEBUG Processing 406/1024 atomic regions from SNP 121673 to 122273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,274 DEBUG Processing 282/649 atomic regions from SNP 84495 to 85095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,317 DEBUG Processing 459/474 atomic regions from SNP 137658 to 138258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:42,398 DEBUG Processing 379/1135 atomic regions from SNP 113472 to 114072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,406 DEBUG Processing 485/902 atomic regions from SNP 145230 to 145830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,454 DEBUG Processing 498/859 atomic regions from SNP 149157 to 149757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,520 DEBUG Processing 283/649 atomic regions from SNP 84795 to 85395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,553 DEBUG Processing 407/1024 atomic regions from SNP 121973 to 122573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,554 DEBUG Processing 460/474 atomic regions from SNP 137958 to 138558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:42,671 DEBUG Processing 380/1135 atomic regions from SNP 113772 to 114372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,690 DEBUG Processing 486/902 atomic regions from SNP 145530 to 146130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,697 DEBUG Processing 499/859 atomic regions from SNP 149457 to 150057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,766 DEBUG Processing 284/649 atomic regions from SNP 85095 to 85695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,793 DEBUG Processing 461/474 atomic regions from SNP 138258 to 138858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:42,845 DEBUG Processing 408/1024 atomic regions from SNP 122273 to 122873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,944 DEBUG Processing 500/859 atomic regions from SNP 149757 to 150357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,948 DEBUG Processing 381/1135 atomic regions from SNP 114072 to 114672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,976 DEBUG Processing 487/902 atomic regions from SNP 145830 to 146430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,010 DEBUG Processing 285/649 atomic regions from SNP 85395 to 85995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,030 DEBUG Processing 462/474 atomic regions from SNP 138558 to 139158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:43,113 DEBUG Processing 409/1024 atomic regions from SNP 122573 to 123173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,192 DEBUG Processing 501/859 atomic regions from SNP 150057 to 150657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,232 DEBUG Processing 382/1135 atomic regions from SNP 114372 to 114972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,256 DEBUG Processing 286/649 atomic regions from SNP 85695 to 86295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,261 DEBUG Processing 488/902 atomic regions from SNP 146130 to 146730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,272 DEBUG Processing 463/474 atomic regions from SNP 138858 to 139458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:43,377 DEBUG Processing 410/1024 atomic regions from SNP 122873 to 123473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,438 DEBUG Processing 502/859 atomic regions from SNP 150357 to 150957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,501 DEBUG Processing 287/649 atomic regions from SNP 85995 to 86595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,511 DEBUG Processing 464/474 atomic regions from SNP 139158 to 139758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:43,515 DEBUG Processing 383/1135 atomic regions from SNP 114672 to 115272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,548 DEBUG Processing 489/902 atomic regions from SNP 146430 to 147030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,641 DEBUG Processing 411/1024 atomic regions from SNP 123173 to 123773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,682 DEBUG Processing 503/859 atomic regions from SNP 150657 to 151257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,750 DEBUG Processing 288/649 atomic regions from SNP 86295 to 86895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,753 DEBUG Processing 465/474 atomic regions from SNP 139458 to 140058 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:43,805 DEBUG Processing 384/1135 atomic regions from SNP 114972 to 115572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,834 DEBUG Processing 490/902 atomic regions from SNP 146730 to 147330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,917 DEBUG Processing 412/1024 atomic regions from SNP 123473 to 124073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,925 DEBUG Processing 504/859 atomic regions from SNP 150957 to 151557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,989 DEBUG Processing 466/474 atomic regions from SNP 139758 to 140358 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:43,992 DEBUG Processing 289/649 atomic regions from SNP 86595 to 87195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,088 DEBUG Processing 385/1135 atomic regions from SNP 115272 to 115872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,117 DEBUG Processing 491/902 atomic regions from SNP 147030 to 147630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,166 DEBUG Processing 505/859 atomic regions from SNP 151257 to 151857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,187 DEBUG Processing 413/1024 atomic regions from SNP 123773 to 124373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,223 DEBUG Processing 467/474 atomic regions from SNP 140058 to 140658 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:44,233 DEBUG Processing 290/649 atomic regions from SNP 86895 to 87495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,367 DEBUG Processing 386/1135 atomic regions from SNP 115572 to 116172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,407 DEBUG Processing 492/902 atomic regions from SNP 147330 to 147930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,412 DEBUG Processing 506/859 atomic regions from SNP 151557 to 152157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,459 DEBUG Processing 414/1024 atomic regions from SNP 124073 to 124673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,461 DEBUG Processing 468/474 atomic regions from SNP 140358 to 140958 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:44,475 DEBUG Processing 291/649 atomic regions from SNP 87195 to 87795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,641 DEBUG Processing 387/1135 atomic regions from SNP 115872 to 116472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,650 DEBUG Processing 507/859 atomic regions from SNP 151857 to 152457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,695 DEBUG Processing 493/902 atomic regions from SNP 147630 to 148230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,699 DEBUG Processing 469/474 atomic regions from SNP 140658 to 141258 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:44,720 DEBUG Processing 292/649 atomic regions from SNP 87495 to 88095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,732 DEBUG Processing 415/1024 atomic regions from SNP 124373 to 124973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,889 DEBUG Processing 508/859 atomic regions from SNP 152157 to 152757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,916 DEBUG Processing 388/1135 atomic regions from SNP 116172 to 116772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,939 DEBUG Processing 470/474 atomic regions from SNP 140958 to 141558 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:44,965 DEBUG Processing 293/649 atomic regions from SNP 87795 to 88395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,976 DEBUG Processing 494/902 atomic regions from SNP 147930 to 148530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,008 DEBUG Processing 416/1024 atomic regions from SNP 124673 to 125273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,143 DEBUG Processing 509/859 atomic regions from SNP 152457 to 153057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,173 DEBUG Processing 471/474 atomic regions from SNP 141258 to 141858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:45,190 DEBUG Processing 389/1135 atomic regions from SNP 116472 to 117072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,203 DEBUG Processing 294/649 atomic regions from SNP 88095 to 88695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,248 DEBUG Processing 495/902 atomic regions from SNP 148230 to 148830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,305 DEBUG Processing 417/1024 atomic regions from SNP 124973 to 125573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,409 DEBUG Processing 472/474 atomic regions from SNP 141558 to 142158 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:45,417 DEBUG Processing 510/859 atomic regions from SNP 152757 to 153357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,442 DEBUG Processing 295/649 atomic regions from SNP 88395 to 88995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,464 DEBUG Processing 390/1135 atomic regions from SNP 116772 to 117372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,519 DEBUG Processing 496/902 atomic regions from SNP 148530 to 149130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,592 DEBUG Processing 418/1024 atomic regions from SNP 125273 to 125873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,649 DEBUG Processing 473/474 atomic regions from SNP 141858 to 142458 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:45,676 DEBUG Processing 511/859 atomic regions from SNP 153057 to 153657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,686 DEBUG Processing 296/649 atomic regions from SNP 88695 to 89295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,749 DEBUG Processing 391/1135 atomic regions from SNP 117072 to 117672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,797 DEBUG Processing 497/902 atomic regions from SNP 148830 to 149430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,865 DEBUG Processing 419/1024 atomic regions from SNP 125573 to 126173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,884 DEBUG Processing 474/474 atomic regions from SNP 142158 to 142758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:45,927 DEBUG Processing 297/649 atomic regions from SNP 88995 to 89595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,930 DEBUG Processing 512/859 atomic regions from SNP 153357 to 153957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,018 DEBUG Unique SNPs positions in subchromosome 4: 142759 2025-01-31 09:45:46,034 DEBUG Processing 392/1135 atomic regions from SNP 117372 to 117972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,078 DEBUG Processing 498/902 atomic regions from SNP 149130 to 149730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,155 DEBUG Processing 420/1024 atomic regions from SNP 125873 to 126473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,171 DEBUG Processing 298/649 atomic regions from SNP 89295 to 89895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,173 DEBUG Processing 513/859 atomic regions from SNP 153657 to 154257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,319 DEBUG Processing 393/1135 atomic regions from SNP 117672 to 118272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,352 DEBUG Processing 499/902 atomic regions from SNP 149430 to 150030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,409 DEBUG Processing 299/649 atomic regions from SNP 89595 to 90195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,413 DEBUG Processing 514/859 atomic regions from SNP 153957 to 154557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,447 DEBUG Processing 421/1024 atomic regions from SNP 126173 to 126773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,602 DEBUG Processing 394/1135 atomic regions from SNP 117972 to 118572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,630 DEBUG Processing 500/902 atomic regions from SNP 149730 to 150330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,650 DEBUG Processing 300/649 atomic regions from SNP 89895 to 90495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,660 DEBUG Processing 515/859 atomic regions from SNP 154257 to 154857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,717 DEBUG Processing 422/1024 atomic regions from SNP 126473 to 127073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,885 DEBUG Processing 395/1135 atomic regions from SNP 118272 to 118872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,889 DEBUG Processing 501/902 atomic regions from SNP 150030 to 150630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,896 DEBUG Processing 301/649 atomic regions from SNP 90195 to 90795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,917 DEBUG Processing 516/859 atomic regions from SNP 154557 to 155157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,930 DEBUG Subchromosome time: 130.98342418693937, subchromosome SNPs: 142759 2025-01-31 09:45:46,948 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:46,996 DEBUG Processing 423/1024 atomic regions from SNP 126773 to 127373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,131 DEBUG Processing 302/649 atomic regions from SNP 90495 to 91095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,131 DEBUG Processing 502/902 atomic regions from SNP 150330 to 150930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,161 DEBUG Processing 517/859 atomic regions from SNP 154857 to 155457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,163 DEBUG Processing 396/1135 atomic regions from SNP 118572 to 119172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,267 DEBUG Processing 424/1024 atomic regions from SNP 127073 to 127673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,368 DEBUG Processing 303/649 atomic regions from SNP 90795 to 91395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,378 DEBUG Processing 503/902 atomic regions from SNP 150630 to 151230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,407 DEBUG Processing 518/859 atomic regions from SNP 155157 to 155757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,444 DEBUG Processing 397/1135 atomic regions from SNP 118872 to 119472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,542 DEBUG Processing 425/1024 atomic regions from SNP 127373 to 127973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,607 DEBUG Processing 304/649 atomic regions from SNP 91095 to 91695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,625 DEBUG Processing 504/902 atomic regions from SNP 150930 to 151530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,650 DEBUG Processing 519/859 atomic regions from SNP 155457 to 156057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,726 DEBUG Processing 398/1135 atomic regions from SNP 119172 to 119772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,810 DEBUG Processing 426/1024 atomic regions from SNP 127673 to 128273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,848 DEBUG Processing 305/649 atomic regions from SNP 91395 to 91995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,876 DEBUG Processing 505/902 atomic regions from SNP 151230 to 151830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,898 DEBUG Processing 520/859 atomic regions from SNP 155757 to 156357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,015 DEBUG Processing 399/1135 atomic regions from SNP 119472 to 120072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,089 DEBUG Processing 306/649 atomic regions from SNP 91695 to 92295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,092 DEBUG Processing 427/1024 atomic regions from SNP 127973 to 128573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,131 DEBUG Processing 506/902 atomic regions from SNP 151530 to 152130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,149 DEBUG Processing 521/859 atomic regions from SNP 156057 to 156657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,294 DEBUG Processing 400/1135 atomic regions from SNP 119772 to 120372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,320 DEBUG Processing 307/649 atomic regions from SNP 91995 to 92595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,355 DEBUG Processing 428/1024 atomic regions from SNP 128273 to 128873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,382 DEBUG Processing 507/902 atomic regions from SNP 151830 to 152430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,396 DEBUG Processing 522/859 atomic regions from SNP 156357 to 156957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,552 DEBUG Processing 308/649 atomic regions from SNP 92295 to 92895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,571 DEBUG Processing 401/1135 atomic regions from SNP 120072 to 120672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,618 DEBUG Processing 429/1024 atomic regions from SNP 128573 to 129173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,623 DEBUG Processing 508/902 atomic regions from SNP 152130 to 152730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,635 DEBUG Processing 523/859 atomic regions from SNP 156657 to 157257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,786 DEBUG Processing 309/649 atomic regions from SNP 92595 to 93195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,850 DEBUG Processing 402/1135 atomic regions from SNP 120372 to 120972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,860 DEBUG Processing 509/902 atomic regions from SNP 152430 to 153030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,876 DEBUG Processing 524/859 atomic regions from SNP 156957 to 157557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,883 DEBUG Processing 430/1024 atomic regions from SNP 128873 to 129473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,031 DEBUG Processing 310/649 atomic regions from SNP 92895 to 93495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,100 DEBUG Processing 510/902 atomic regions from SNP 152730 to 153330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,131 DEBUG Processing 403/1135 atomic regions from SNP 120672 to 121272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,131 DEBUG Processing 525/859 atomic regions from SNP 157257 to 157857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,150 DEBUG Processing 431/1024 atomic regions from SNP 129173 to 129773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,272 DEBUG Processing 311/649 atomic regions from SNP 93195 to 93795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,347 DEBUG Processing 511/902 atomic regions from SNP 153030 to 153630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,395 DEBUG Processing 526/859 atomic regions from SNP 157557 to 158157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,413 DEBUG Processing 404/1135 atomic regions from SNP 120972 to 121572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,422 DEBUG Processing 432/1024 atomic regions from SNP 129473 to 130073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,508 DEBUG Processing 312/649 atomic regions from SNP 93495 to 94095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,590 DEBUG Processing 512/902 atomic regions from SNP 153330 to 153930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,640 DEBUG Processing 527/859 atomic regions from SNP 157857 to 158457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,700 DEBUG Processing 433/1024 atomic regions from SNP 129773 to 130373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,701 DEBUG Processing 405/1135 atomic regions from SNP 121272 to 121872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,748 DEBUG Processing 313/649 atomic regions from SNP 93795 to 94395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,836 DEBUG Processing 513/902 atomic regions from SNP 153630 to 154230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,882 DEBUG Processing 528/859 atomic regions from SNP 158157 to 158757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,989 DEBUG Processing 314/649 atomic regions from SNP 94095 to 94695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,009 DEBUG Processing 434/1024 atomic regions from SNP 130073 to 130673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,010 DEBUG Processing 406/1135 atomic regions from SNP 121572 to 122172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,075 DEBUG Processing 514/902 atomic regions from SNP 153930 to 154530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,112 DEBUG Processing 529/859 atomic regions from SNP 158457 to 159057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,235 DEBUG Processing 315/649 atomic regions from SNP 94395 to 94995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,312 DEBUG Processing 435/1024 atomic regions from SNP 130373 to 130973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,319 DEBUG Processing 515/902 atomic regions from SNP 154230 to 154830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,327 DEBUG Processing 407/1135 atomic regions from SNP 121872 to 122472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,352 DEBUG Processing 530/859 atomic regions from SNP 158757 to 159357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,475 DEBUG Processing 316/649 atomic regions from SNP 94695 to 95295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,558 DEBUG Processing 516/902 atomic regions from SNP 154530 to 155130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,596 DEBUG Processing 436/1024 atomic regions from SNP 130673 to 131273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,603 DEBUG Processing 531/859 atomic regions from SNP 159057 to 159657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,619 DEBUG Processing 408/1135 atomic regions from SNP 122172 to 122772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,717 DEBUG Processing 317/649 atomic regions from SNP 94995 to 95595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,802 DEBUG Processing 517/902 atomic regions from SNP 154830 to 155430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,865 DEBUG Processing 532/859 atomic regions from SNP 159357 to 159957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,890 DEBUG Processing 437/1024 atomic regions from SNP 130973 to 131573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,924 DEBUG Processing 409/1135 atomic regions from SNP 122472 to 123072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,964 DEBUG Processing 318/649 atomic regions from SNP 95295 to 95895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,052 DEBUG Processing 518/902 atomic regions from SNP 155130 to 155730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,119 DEBUG Processing 533/859 atomic regions from SNP 159657 to 160257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,168 DEBUG Processing 438/1024 atomic regions from SNP 131273 to 131873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,205 DEBUG Processing 319/649 atomic regions from SNP 95595 to 96195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,210 DEBUG Processing 410/1135 atomic regions from SNP 122772 to 123372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,306 DEBUG Processing 519/902 atomic regions from SNP 155430 to 156030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,362 DEBUG Processing 534/859 atomic regions from SNP 159957 to 160557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,437 DEBUG Processing 439/1024 atomic regions from SNP 131573 to 132173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,441 DEBUG Processing 320/649 atomic regions from SNP 95895 to 96495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,488 DEBUG Processing 411/1135 atomic regions from SNP 123072 to 123672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,573 DEBUG Processing 520/902 atomic regions from SNP 155730 to 156330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,601 DEBUG Processing 535/859 atomic regions from SNP 160257 to 160857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,678 DEBUG Processing 321/649 atomic regions from SNP 96195 to 96795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,734 DEBUG Processing 440/1024 atomic regions from SNP 131873 to 132473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,769 DEBUG Processing 412/1135 atomic regions from SNP 123372 to 123972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,841 DEBUG Processing 521/902 atomic regions from SNP 156030 to 156630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,848 DEBUG Processing 536/859 atomic regions from SNP 160557 to 161157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,919 DEBUG Processing 322/649 atomic regions from SNP 96495 to 97095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,023 DEBUG Processing 441/1024 atomic regions from SNP 132173 to 132773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,059 DEBUG Processing 413/1135 atomic regions from SNP 123672 to 124272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,105 DEBUG Processing 537/859 atomic regions from SNP 160857 to 161457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,120 DEBUG Processing 522/902 atomic regions from SNP 156330 to 156930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,166 DEBUG Processing 323/649 atomic regions from SNP 96795 to 97395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,300 DEBUG Processing 442/1024 atomic regions from SNP 132473 to 133073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,348 DEBUG Processing 414/1135 atomic regions from SNP 123972 to 124572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,365 DEBUG Processing 538/859 atomic regions from SNP 161157 to 161757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,394 DEBUG Processing 523/902 atomic regions from SNP 156630 to 157230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,405 DEBUG Processing 324/649 atomic regions from SNP 97095 to 97695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,568 DEBUG Processing 443/1024 atomic regions from SNP 132773 to 133373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,627 DEBUG Processing 539/859 atomic regions from SNP 161457 to 162057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,635 DEBUG Processing 415/1135 atomic regions from SNP 124272 to 124872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,643 DEBUG Processing 325/649 atomic regions from SNP 97395 to 97995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,683 DEBUG Processing 524/902 atomic regions from SNP 156930 to 157530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,828 DEBUG Processing 444/1024 atomic regions from SNP 133073 to 133673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,880 DEBUG Processing 326/649 atomic regions from SNP 97695 to 98295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,888 DEBUG Processing 540/859 atomic regions from SNP 161757 to 162357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,927 DEBUG Processing 416/1135 atomic regions from SNP 124572 to 125172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,965 DEBUG Processing 525/902 atomic regions from SNP 157230 to 157830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,100 DEBUG Processing 445/1024 atomic regions from SNP 133373 to 133973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,113 DEBUG Processing 327/649 atomic regions from SNP 97995 to 98595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,145 DEBUG Processing 541/859 atomic regions from SNP 162057 to 162657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,236 DEBUG Processing 526/902 atomic regions from SNP 157530 to 158130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,236 DEBUG Processing 417/1135 atomic regions from SNP 124872 to 125472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,337 DEBUG Processing 328/649 atomic regions from SNP 98295 to 98895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,380 DEBUG Processing 446/1024 atomic regions from SNP 133673 to 134273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,396 DEBUG Processing 542/859 atomic regions from SNP 162357 to 162957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,520 DEBUG Processing 527/902 atomic regions from SNP 157830 to 158430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,536 DEBUG Processing 418/1135 atomic regions from SNP 125172 to 125772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,561 DEBUG Processing 329/649 atomic regions from SNP 98595 to 99195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,638 DEBUG Processing 543/859 atomic regions from SNP 162657 to 163257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,642 DEBUG Processing 447/1024 atomic regions from SNP 133973 to 134573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,801 DEBUG Processing 528/902 atomic regions from SNP 158130 to 158730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,805 DEBUG Processing 330/649 atomic regions from SNP 98895 to 99495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,849 DEBUG Processing 419/1135 atomic regions from SNP 125472 to 126072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,895 DEBUG Processing 544/859 atomic regions from SNP 162957 to 163557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,903 DEBUG Processing 448/1024 atomic regions from SNP 134273 to 134873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,063 DEBUG Processing 331/649 atomic regions from SNP 99195 to 99795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,079 DEBUG Processing 529/902 atomic regions from SNP 158430 to 159030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,135 DEBUG Processing 545/859 atomic regions from SNP 163257 to 163857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,152 DEBUG Processing 420/1135 atomic regions from SNP 125772 to 126372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,168 DEBUG Processing 449/1024 atomic regions from SNP 134573 to 135173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,322 DEBUG Processing 332/649 atomic regions from SNP 99495 to 100095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,357 DEBUG Processing 530/902 atomic regions from SNP 158730 to 159330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,386 DEBUG Processing 546/859 atomic regions from SNP 163557 to 164157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,439 DEBUG Processing 450/1024 atomic regions from SNP 134873 to 135473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,453 DEBUG Processing 421/1135 atomic regions from SNP 126072 to 126672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,579 DEBUG Processing 333/649 atomic regions from SNP 99795 to 100395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,638 DEBUG Processing 531/902 atomic regions from SNP 159030 to 159630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,662 DEBUG Processing 547/859 atomic regions from SNP 163857 to 164457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,719 DEBUG Processing 451/1024 atomic regions from SNP 135173 to 135773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,762 DEBUG Processing 422/1135 atomic regions from SNP 126372 to 126972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,808 DEBUG Processing 334/649 atomic regions from SNP 100095 to 100695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,921 DEBUG Processing 532/902 atomic regions from SNP 159330 to 159930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,927 DEBUG Processing 548/859 atomic regions from SNP 164157 to 164757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,998 DEBUG Processing 452/1024 atomic regions from SNP 135473 to 136073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,030 DEBUG Processing 335/649 atomic regions from SNP 100395 to 100995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,059 DEBUG Processing 423/1135 atomic regions from SNP 126672 to 127272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,181 DEBUG Processing 549/859 atomic regions from SNP 164457 to 165057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,208 DEBUG Processing 533/902 atomic regions from SNP 159630 to 160230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,262 DEBUG Processing 336/649 atomic regions from SNP 100695 to 101295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,275 DEBUG Processing 453/1024 atomic regions from SNP 135773 to 136373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,367 DEBUG Processing 424/1135 atomic regions from SNP 126972 to 127572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,434 DEBUG Processing 550/859 atomic regions from SNP 164757 to 165357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,492 DEBUG Processing 534/902 atomic regions from SNP 159930 to 160530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,506 DEBUG Processing 337/649 atomic regions from SNP 100995 to 101595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,551 DEBUG Processing 454/1024 atomic regions from SNP 136073 to 136673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,674 DEBUG Processing 425/1135 atomic regions from SNP 127272 to 127872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,684 DEBUG Processing 551/859 atomic regions from SNP 165057 to 165657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,755 DEBUG Processing 338/649 atomic regions from SNP 101295 to 101895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,760 DEBUG Processing 535/902 atomic regions from SNP 160230 to 160830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,824 DEBUG Processing 455/1024 atomic regions from SNP 136373 to 136973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,826 DEBUG Segmenting atomic regions: 2025-01-31 09:45:55,931 DEBUG Processing 552/859 atomic regions from SNP 165357 to 165957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,932 DEBUG Processing 1/233 atomic regions from SNP 0 to 602 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:55,986 DEBUG Processing 426/1135 atomic regions from SNP 127572 to 128172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,004 DEBUG Processing 339/649 atomic regions from SNP 101595 to 102195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,042 DEBUG Processing 536/902 atomic regions from SNP 160530 to 161130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,095 DEBUG Processing 456/1024 atomic regions from SNP 136673 to 137273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,153 DEBUG Processing 2/233 atomic regions from SNP 302 to 904 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,167 DEBUG Processing 553/859 atomic regions from SNP 165657 to 166257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,244 DEBUG Processing 340/649 atomic regions from SNP 101895 to 102495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,278 DEBUG Processing 427/1135 atomic regions from SNP 127872 to 128472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,301 DEBUG Processing 537/902 atomic regions from SNP 160830 to 161430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,373 DEBUG Processing 457/1024 atomic regions from SNP 136973 to 137573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,380 DEBUG Processing 3/233 atomic regions from SNP 604 to 1206 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,404 DEBUG Processing 554/859 atomic regions from SNP 165957 to 166557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,483 DEBUG Processing 341/649 atomic regions from SNP 102195 to 102795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,559 DEBUG Processing 538/902 atomic regions from SNP 161130 to 161730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,566 DEBUG Processing 428/1135 atomic regions from SNP 128172 to 128772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,622 DEBUG Processing 4/233 atomic regions from SNP 906 to 1508 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,650 DEBUG Processing 555/859 atomic regions from SNP 166257 to 166857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,655 DEBUG Processing 458/1024 atomic regions from SNP 137273 to 137873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,725 DEBUG Processing 342/649 atomic regions from SNP 102495 to 103095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,835 DEBUG Processing 539/902 atomic regions from SNP 161430 to 162030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,855 DEBUG Processing 429/1135 atomic regions from SNP 128472 to 129072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,869 DEBUG Processing 5/233 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,911 DEBUG Processing 556/859 atomic regions from SNP 166557 to 167157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,939 DEBUG Processing 459/1024 atomic regions from SNP 137573 to 138173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,956 DEBUG Processing 343/649 atomic regions from SNP 102795 to 103395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,099 DEBUG Processing 540/902 atomic regions from SNP 161730 to 162330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,107 DEBUG Processing 6/233 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,147 DEBUG Processing 430/1135 atomic regions from SNP 128772 to 129372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,165 DEBUG Processing 557/859 atomic regions from SNP 166857 to 167457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,196 DEBUG Processing 344/649 atomic regions from SNP 103095 to 103695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,215 DEBUG Processing 460/1024 atomic regions from SNP 137873 to 138473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,333 DEBUG Processing 7/233 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,364 DEBUG Processing 541/902 atomic regions from SNP 162030 to 162630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,415 DEBUG Processing 558/859 atomic regions from SNP 167157 to 167757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,430 DEBUG Processing 431/1135 atomic regions from SNP 129072 to 129672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,438 DEBUG Processing 345/649 atomic regions from SNP 103395 to 103995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,491 DEBUG Processing 461/1024 atomic regions from SNP 138173 to 138773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,556 DEBUG Processing 8/233 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,626 DEBUG Processing 542/902 atomic regions from SNP 162330 to 162930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,664 DEBUG Processing 559/859 atomic regions from SNP 167457 to 168057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,677 DEBUG Processing 346/649 atomic regions from SNP 103695 to 104295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,713 DEBUG Processing 432/1135 atomic regions from SNP 129372 to 129972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,767 DEBUG Processing 462/1024 atomic regions from SNP 138473 to 139073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,788 DEBUG Processing 9/233 atomic regions from SNP 2416 to 3018 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,869 DEBUG Processing 543/902 atomic regions from SNP 162630 to 163230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,907 DEBUG Processing 347/649 atomic regions from SNP 103995 to 104595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,909 DEBUG Processing 560/859 atomic regions from SNP 167757 to 168357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,991 DEBUG Processing 433/1135 atomic regions from SNP 129672 to 130272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,026 DEBUG Processing 10/233 atomic regions from SNP 2718 to 3320 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,042 DEBUG Processing 463/1024 atomic regions from SNP 138773 to 139373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,112 DEBUG Processing 544/902 atomic regions from SNP 162930 to 163530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,133 DEBUG Processing 348/649 atomic regions from SNP 104295 to 104895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,149 DEBUG Processing 561/859 atomic regions from SNP 168057 to 168657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,261 DEBUG Processing 11/233 atomic regions from SNP 3020 to 3622 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,268 DEBUG Processing 434/1135 atomic regions from SNP 129972 to 130572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,322 DEBUG Processing 464/1024 atomic regions from SNP 139073 to 139673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,366 DEBUG Processing 545/902 atomic regions from SNP 163230 to 163830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,373 DEBUG Processing 349/649 atomic regions from SNP 104595 to 105195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,397 DEBUG Processing 562/859 atomic regions from SNP 168357 to 168957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,485 DEBUG Processing 12/233 atomic regions from SNP 3322 to 3924 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,546 DEBUG Processing 435/1135 atomic regions from SNP 130272 to 130872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,606 DEBUG Processing 465/1024 atomic regions from SNP 139373 to 139973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,623 DEBUG Processing 350/649 atomic regions from SNP 104895 to 105495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,626 DEBUG Processing 546/902 atomic regions from SNP 163530 to 164130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,649 DEBUG Processing 563/859 atomic regions from SNP 168657 to 169257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,709 DEBUG Processing 13/233 atomic regions from SNP 3624 to 4226 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,825 DEBUG Processing 436/1135 atomic regions from SNP 130572 to 131172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,875 DEBUG Processing 351/649 atomic regions from SNP 105195 to 105795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,889 DEBUG Processing 466/1024 atomic regions from SNP 139673 to 140273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,890 DEBUG Processing 547/902 atomic regions from SNP 163830 to 164430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,908 DEBUG Processing 564/859 atomic regions from SNP 168957 to 169557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,942 DEBUG Processing 14/233 atomic regions from SNP 3926 to 4528 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,101 DEBUG Processing 437/1135 atomic regions from SNP 130872 to 131472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,120 DEBUG Processing 352/649 atomic regions from SNP 105495 to 106095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,144 DEBUG Processing 548/902 atomic regions from SNP 164130 to 164730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,159 DEBUG Processing 565/859 atomic regions from SNP 169257 to 169857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,169 DEBUG Processing 467/1024 atomic regions from SNP 139973 to 140573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,179 DEBUG Processing 15/233 atomic regions from SNP 4228 to 4830 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,354 DEBUG Processing 353/649 atomic regions from SNP 105795 to 106395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,375 DEBUG Processing 438/1135 atomic regions from SNP 131172 to 131772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,391 DEBUG Processing 549/902 atomic regions from SNP 164430 to 165030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,416 DEBUG Processing 16/233 atomic regions from SNP 4530 to 5132 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,426 DEBUG Processing 566/859 atomic regions from SNP 169557 to 170157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,445 DEBUG Processing 468/1024 atomic regions from SNP 140273 to 140873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,590 DEBUG Processing 354/649 atomic regions from SNP 106095 to 106695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,639 DEBUG Processing 550/902 atomic regions from SNP 164730 to 165330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,650 DEBUG Processing 17/233 atomic regions from SNP 4832 to 5434 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,652 DEBUG Processing 439/1135 atomic regions from SNP 131472 to 132072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,706 DEBUG Processing 567/859 atomic regions from SNP 169857 to 170457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,715 DEBUG Processing 469/1024 atomic regions from SNP 140573 to 141173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,824 DEBUG Processing 355/649 atomic regions from SNP 106395 to 106995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,882 DEBUG Processing 18/233 atomic regions from SNP 5134 to 5736 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,889 DEBUG Processing 551/902 atomic regions from SNP 165030 to 165630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,931 DEBUG Processing 440/1135 atomic regions from SNP 131772 to 132372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,975 DEBUG Processing 568/859 atomic regions from SNP 170157 to 170757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,990 DEBUG Processing 470/1024 atomic regions from SNP 140873 to 141473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,069 DEBUG Processing 356/649 atomic regions from SNP 106695 to 107295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,122 DEBUG Processing 19/233 atomic regions from SNP 5436 to 6038 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,147 DEBUG Processing 552/902 atomic regions from SNP 165330 to 165930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,209 DEBUG Processing 441/1135 atomic regions from SNP 132072 to 132672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,240 DEBUG Processing 569/859 atomic regions from SNP 170457 to 171057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,258 DEBUG Processing 471/1024 atomic regions from SNP 141173 to 141773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,308 DEBUG Processing 357/649 atomic regions from SNP 106995 to 107595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,363 DEBUG Processing 20/233 atomic regions from SNP 5738 to 6340 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,409 DEBUG Processing 553/902 atomic regions from SNP 165630 to 166230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,485 DEBUG Processing 570/859 atomic regions from SNP 170757 to 171357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,491 DEBUG Processing 442/1135 atomic regions from SNP 132372 to 132972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,536 DEBUG Processing 472/1024 atomic regions from SNP 141473 to 142073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,554 DEBUG Processing 358/649 atomic regions from SNP 107295 to 107895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,597 DEBUG Processing 21/233 atomic regions from SNP 6040 to 6642 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,675 DEBUG Processing 554/902 atomic regions from SNP 165930 to 166530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,726 DEBUG Processing 571/859 atomic regions from SNP 171057 to 171657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,767 DEBUG Processing 443/1135 atomic regions from SNP 132672 to 133272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,797 DEBUG Processing 359/649 atomic regions from SNP 107595 to 108195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,811 DEBUG Processing 473/1024 atomic regions from SNP 141773 to 142373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,829 DEBUG Processing 22/233 atomic regions from SNP 6342 to 6944 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,947 DEBUG Processing 555/902 atomic regions from SNP 166230 to 166830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,968 DEBUG Processing 572/859 atomic regions from SNP 171357 to 171957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,047 DEBUG Processing 360/649 atomic regions from SNP 107895 to 108495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,055 DEBUG Processing 444/1135 atomic regions from SNP 132972 to 133572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,071 DEBUG Processing 23/233 atomic regions from SNP 6644 to 7246 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,090 DEBUG Processing 474/1024 atomic regions from SNP 142073 to 142673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,205 DEBUG Processing 556/902 atomic regions from SNP 166530 to 167130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,206 DEBUG Processing 573/859 atomic regions from SNP 171657 to 172257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,297 DEBUG Processing 361/649 atomic regions from SNP 108195 to 108795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,314 DEBUG Processing 24/233 atomic regions from SNP 6946 to 7548 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,354 DEBUG Processing 445/1135 atomic regions from SNP 133272 to 133872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,375 DEBUG Processing 475/1024 atomic regions from SNP 142373 to 142973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,443 DEBUG Processing 574/859 atomic regions from SNP 171957 to 172557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,460 DEBUG Processing 557/902 atomic regions from SNP 166830 to 167430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,541 DEBUG Processing 362/649 atomic regions from SNP 108495 to 109095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,551 DEBUG Processing 25/233 atomic regions from SNP 7248 to 7850 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,647 DEBUG Processing 446/1135 atomic regions from SNP 133572 to 134172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,664 DEBUG Processing 476/1024 atomic regions from SNP 142673 to 143273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,693 DEBUG Processing 575/859 atomic regions from SNP 172257 to 172857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,730 DEBUG Processing 558/902 atomic regions from SNP 167130 to 167730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,775 DEBUG Processing 26/233 atomic regions from SNP 7550 to 8152 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,784 DEBUG Processing 363/649 atomic regions from SNP 108795 to 109395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,938 DEBUG Processing 447/1135 atomic regions from SNP 133872 to 134472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,951 DEBUG Processing 477/1024 atomic regions from SNP 142973 to 143573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,959 DEBUG Processing 576/859 atomic regions from SNP 172557 to 173157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,984 DEBUG Processing 559/902 atomic regions from SNP 167430 to 168030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,996 DEBUG Processing 27/233 atomic regions from SNP 7852 to 8454 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,030 DEBUG Processing 364/649 atomic regions from SNP 109095 to 109695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,227 DEBUG Processing 28/233 atomic regions from SNP 8154 to 8756 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,229 DEBUG Processing 448/1135 atomic regions from SNP 134172 to 134772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,235 DEBUG Processing 478/1024 atomic regions from SNP 143273 to 143873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,238 DEBUG Processing 577/859 atomic regions from SNP 172857 to 173457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,257 DEBUG Processing 560/902 atomic regions from SNP 167730 to 168330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,289 DEBUG Processing 365/649 atomic regions from SNP 109395 to 109995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,459 DEBUG Processing 29/233 atomic regions from SNP 8456 to 9058 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,510 DEBUG Processing 578/859 atomic regions from SNP 173157 to 173757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,518 DEBUG Processing 449/1135 atomic regions from SNP 134472 to 135072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,521 DEBUG Processing 479/1024 atomic regions from SNP 143573 to 144173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,540 DEBUG Processing 561/902 atomic regions from SNP 168030 to 168630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,548 DEBUG Processing 366/649 atomic regions from SNP 109695 to 110295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,686 DEBUG Processing 30/233 atomic regions from SNP 8758 to 9360 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,752 DEBUG Processing 579/859 atomic regions from SNP 173457 to 174057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,796 DEBUG Processing 480/1024 atomic regions from SNP 143873 to 144473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,800 DEBUG Processing 450/1135 atomic regions from SNP 134772 to 135372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,803 DEBUG Processing 367/649 atomic regions from SNP 109995 to 110595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,814 DEBUG Processing 562/902 atomic regions from SNP 168330 to 168930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,919 DEBUG Processing 31/233 atomic regions from SNP 9060 to 9662 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,987 DEBUG Processing 580/859 atomic regions from SNP 173757 to 174357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,049 DEBUG Processing 368/649 atomic regions from SNP 110295 to 110895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,065 DEBUG Processing 563/902 atomic regions from SNP 168630 to 169230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,069 DEBUG Processing 481/1024 atomic regions from SNP 144173 to 144773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,083 DEBUG Processing 451/1135 atomic regions from SNP 135072 to 135672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,154 DEBUG Processing 32/233 atomic regions from SNP 9362 to 9964 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,226 DEBUG Processing 581/859 atomic regions from SNP 174057 to 174657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,297 DEBUG Processing 369/649 atomic regions from SNP 110595 to 111195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,312 DEBUG Processing 564/902 atomic regions from SNP 168930 to 169530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,333 DEBUG Processing 482/1024 atomic regions from SNP 144473 to 145073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,360 DEBUG Processing 452/1135 atomic regions from SNP 135372 to 135972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,391 DEBUG Processing 33/233 atomic regions from SNP 9664 to 10266 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,473 DEBUG Processing 582/859 atomic regions from SNP 174357 to 174957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,554 DEBUG Processing 370/649 atomic regions from SNP 110895 to 111495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,589 DEBUG Processing 565/902 atomic regions from SNP 169230 to 169830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,600 DEBUG Processing 483/1024 atomic regions from SNP 144773 to 145373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,628 DEBUG Processing 34/233 atomic regions from SNP 9966 to 10568 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,637 DEBUG Processing 453/1135 atomic regions from SNP 135672 to 136272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,727 DEBUG Processing 583/859 atomic regions from SNP 174657 to 175257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,823 DEBUG Processing 371/649 atomic regions from SNP 111195 to 111795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,858 DEBUG Processing 35/233 atomic regions from SNP 10268 to 10870 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,859 DEBUG Processing 484/1024 atomic regions from SNP 145073 to 145673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,866 DEBUG Processing 566/902 atomic regions from SNP 169530 to 170130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,913 DEBUG Processing 454/1135 atomic regions from SNP 135972 to 136572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,993 DEBUG Processing 584/859 atomic regions from SNP 174957 to 175557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,088 DEBUG Processing 372/649 atomic regions from SNP 111495 to 112095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,092 DEBUG Processing 36/233 atomic regions from SNP 10570 to 11172 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:04,116 DEBUG Processing 567/902 atomic regions from SNP 169830 to 170430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,122 DEBUG Processing 485/1024 atomic regions from SNP 145373 to 145973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,188 DEBUG Processing 455/1135 atomic regions from SNP 136272 to 136872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,249 DEBUG Processing 585/859 atomic regions from SNP 175257 to 175857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,327 DEBUG Processing 37/233 atomic regions from SNP 10872 to 11474 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:04,333 DEBUG Processing 373/649 atomic regions from SNP 111795 to 112395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,372 DEBUG Processing 568/902 atomic regions from SNP 170130 to 170730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,413 DEBUG Processing 486/1024 atomic regions from SNP 145673 to 146273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,472 DEBUG Processing 456/1135 atomic regions from SNP 136572 to 137172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,506 DEBUG Processing 586/859 atomic regions from SNP 175557 to 176157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,560 DEBUG Processing 38/233 atomic regions from SNP 11174 to 11776 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:04,579 DEBUG Processing 374/649 atomic regions from SNP 112095 to 112695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,629 DEBUG Processing 569/902 atomic regions from SNP 170430 to 171030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,721 DEBUG Processing 487/1024 atomic regions from SNP 145973 to 146573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,760 DEBUG Processing 457/1135 atomic regions from SNP 136872 to 137472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,764 DEBUG Processing 587/859 atomic regions from SNP 175857 to 176457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,792 DEBUG Processing 39/233 atomic regions from SNP 11476 to 12078 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:04,824 DEBUG Processing 375/649 atomic regions from SNP 112395 to 112995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,882 DEBUG Processing 570/902 atomic regions from SNP 170730 to 171330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,023 DEBUG Processing 588/859 atomic regions from SNP 176157 to 176757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,028 DEBUG Processing 40/233 atomic regions from SNP 11778 to 12380 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:05,035 DEBUG Processing 488/1024 atomic regions from SNP 146273 to 146873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,045 DEBUG Processing 458/1135 atomic regions from SNP 137172 to 137772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,072 DEBUG Processing 376/649 atomic regions from SNP 112695 to 113295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,161 DEBUG Processing 571/902 atomic regions from SNP 171030 to 171630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,259 DEBUG Processing 41/233 atomic regions from SNP 12080 to 12682 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:05,282 DEBUG Processing 589/859 atomic regions from SNP 176457 to 177057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,316 DEBUG Processing 489/1024 atomic regions from SNP 146573 to 147173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,328 DEBUG Processing 459/1135 atomic regions from SNP 137472 to 138072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,338 DEBUG Processing 377/649 atomic regions from SNP 112995 to 113595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,444 DEBUG Processing 572/902 atomic regions from SNP 171330 to 171930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,482 DEBUG Processing 42/233 atomic regions from SNP 12382 to 12984 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:05,522 DEBUG Processing 590/859 atomic regions from SNP 176757 to 177357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,580 DEBUG Processing 378/649 atomic regions from SNP 113295 to 113895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,589 DEBUG Processing 490/1024 atomic regions from SNP 146873 to 147473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,605 DEBUG Processing 460/1135 atomic regions from SNP 137772 to 138372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,716 DEBUG Processing 43/233 atomic regions from SNP 12684 to 13286 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:05,727 DEBUG Processing 573/902 atomic regions from SNP 171630 to 172230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,781 DEBUG Processing 591/859 atomic regions from SNP 177057 to 177657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,816 DEBUG Processing 379/649 atomic regions from SNP 113595 to 114195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,855 DEBUG Processing 491/1024 atomic regions from SNP 147173 to 147773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,880 DEBUG Processing 461/1135 atomic regions from SNP 138072 to 138672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,953 DEBUG Processing 44/233 atomic regions from SNP 12986 to 13588 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:05,997 DEBUG Processing 574/902 atomic regions from SNP 171930 to 172530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,056 DEBUG Processing 592/859 atomic regions from SNP 177357 to 177957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,078 DEBUG Processing 380/649 atomic regions from SNP 113895 to 114495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,126 DEBUG Processing 492/1024 atomic regions from SNP 147473 to 148073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,161 DEBUG Processing 462/1135 atomic regions from SNP 138372 to 138972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,186 DEBUG Processing 45/233 atomic regions from SNP 13288 to 13890 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:06,282 DEBUG Processing 575/902 atomic regions from SNP 172230 to 172830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,300 DEBUG Processing 593/859 atomic regions from SNP 177657 to 178257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,343 DEBUG Processing 381/649 atomic regions from SNP 114195 to 114795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,396 DEBUG Processing 493/1024 atomic regions from SNP 147773 to 148373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,412 DEBUG Processing 46/233 atomic regions from SNP 13590 to 14191 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:06,440 DEBUG Processing 463/1135 atomic regions from SNP 138672 to 139272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,558 DEBUG Processing 594/859 atomic regions from SNP 177957 to 178557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,559 DEBUG Processing 576/902 atomic regions from SNP 172530 to 173130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,594 DEBUG Processing 382/649 atomic regions from SNP 114495 to 115095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,658 DEBUG Processing 47/233 atomic regions from SNP 13891 to 14492 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:06,671 DEBUG Processing 494/1024 atomic regions from SNP 148073 to 148673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,725 DEBUG Processing 464/1135 atomic regions from SNP 138972 to 139572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,807 DEBUG Processing 595/859 atomic regions from SNP 178257 to 178857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,818 DEBUG Processing 577/902 atomic regions from SNP 172830 to 173430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,840 DEBUG Processing 383/649 atomic regions from SNP 114795 to 115395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,912 DEBUG Processing 48/233 atomic regions from SNP 14192 to 14793 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:06,947 DEBUG Processing 495/1024 atomic regions from SNP 148373 to 148973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,009 DEBUG Processing 465/1135 atomic regions from SNP 139272 to 139872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,073 DEBUG Processing 596/859 atomic regions from SNP 178557 to 179157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,077 DEBUG Processing 578/902 atomic regions from SNP 173130 to 173730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,078 DEBUG Processing 384/649 atomic regions from SNP 115095 to 115695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,143 DEBUG Processing 49/233 atomic regions from SNP 14493 to 15094 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:07,223 DEBUG Processing 496/1024 atomic regions from SNP 148673 to 149273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,295 DEBUG Processing 466/1135 atomic regions from SNP 139572 to 140172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,318 DEBUG Processing 385/649 atomic regions from SNP 115395 to 115995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,327 DEBUG Processing 597/859 atomic regions from SNP 178857 to 179457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,346 DEBUG Processing 579/902 atomic regions from SNP 173430 to 174030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,369 DEBUG Processing 50/233 atomic regions from SNP 14794 to 15395 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:07,500 DEBUG Processing 497/1024 atomic regions from SNP 148973 to 149573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,564 DEBUG Processing 386/649 atomic regions from SNP 115695 to 116295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,575 DEBUG Processing 598/859 atomic regions from SNP 179157 to 179757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,584 DEBUG Processing 467/1135 atomic regions from SNP 139872 to 140472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,598 DEBUG Processing 51/233 atomic regions from SNP 15095 to 15696 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:07,620 DEBUG Processing 580/902 atomic regions from SNP 173730 to 174330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,774 DEBUG Processing 498/1024 atomic regions from SNP 149273 to 149873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,813 DEBUG Processing 387/649 atomic regions from SNP 115995 to 116595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,825 DEBUG Processing 599/859 atomic regions from SNP 179457 to 180057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,831 DEBUG Processing 52/233 atomic regions from SNP 15396 to 15997 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:07,871 DEBUG Processing 468/1135 atomic regions from SNP 140172 to 140772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,911 DEBUG Processing 581/902 atomic regions from SNP 174030 to 174630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,048 DEBUG Processing 499/1024 atomic regions from SNP 149573 to 150173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,058 DEBUG Processing 388/649 atomic regions from SNP 116295 to 116895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,060 DEBUG Processing 53/233 atomic regions from SNP 15697 to 16298 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:08,075 DEBUG Processing 600/859 atomic regions from SNP 179757 to 180357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,155 DEBUG Processing 469/1135 atomic regions from SNP 140472 to 141072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,194 DEBUG Processing 582/902 atomic regions from SNP 174330 to 174930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,287 DEBUG Processing 54/233 atomic regions from SNP 15998 to 16599 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:08,303 DEBUG Processing 389/649 atomic regions from SNP 116595 to 117195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,318 DEBUG Processing 601/859 atomic regions from SNP 180057 to 180657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,327 DEBUG Processing 500/1024 atomic regions from SNP 149873 to 150473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,462 DEBUG Processing 583/902 atomic regions from SNP 174630 to 175230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,469 DEBUG Processing 470/1135 atomic regions from SNP 140772 to 141372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,517 DEBUG Processing 55/233 atomic regions from SNP 16299 to 16900 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:08,547 DEBUG Processing 390/649 atomic regions from SNP 116895 to 117495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,559 DEBUG Processing 602/859 atomic regions from SNP 180357 to 180957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,598 DEBUG Processing 501/1024 atomic regions from SNP 150173 to 150773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,718 DEBUG Processing 584/902 atomic regions from SNP 174930 to 175530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,745 DEBUG Processing 56/233 atomic regions from SNP 16600 to 17201 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:08,760 DEBUG Processing 471/1135 atomic regions from SNP 141072 to 141672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,795 DEBUG Processing 391/649 atomic regions from SNP 117195 to 117795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,801 DEBUG Processing 603/859 atomic regions from SNP 180657 to 181257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,869 DEBUG Processing 502/1024 atomic regions from SNP 150473 to 151073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,972 DEBUG Processing 585/902 atomic regions from SNP 175230 to 175830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,974 DEBUG Processing 57/233 atomic regions from SNP 16901 to 17502 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:09,038 DEBUG Processing 472/1135 atomic regions from SNP 141372 to 141972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,039 DEBUG Processing 392/649 atomic regions from SNP 117495 to 118095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,068 DEBUG Processing 604/859 atomic regions from SNP 180957 to 181557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,141 DEBUG Processing 503/1024 atomic regions from SNP 150773 to 151373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,200 DEBUG Processing 58/233 atomic regions from SNP 17202 to 17803 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:09,245 DEBUG Processing 586/902 atomic regions from SNP 175530 to 176130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,287 DEBUG Processing 393/649 atomic regions from SNP 117795 to 118395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,318 DEBUG Processing 473/1135 atomic regions from SNP 141672 to 142272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,332 DEBUG Processing 605/859 atomic regions from SNP 181257 to 181857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,414 DEBUG Processing 504/1024 atomic regions from SNP 151073 to 151673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,424 DEBUG Processing 59/233 atomic regions from SNP 17503 to 18104 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:09,523 DEBUG Processing 587/902 atomic regions from SNP 175830 to 176430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,539 DEBUG Processing 394/649 atomic regions from SNP 118095 to 118695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,600 DEBUG Processing 474/1135 atomic regions from SNP 141972 to 142572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,606 DEBUG Processing 606/859 atomic regions from SNP 181557 to 182157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,646 DEBUG Processing 60/233 atomic regions from SNP 17804 to 18405 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:09,687 DEBUG Processing 505/1024 atomic regions from SNP 151373 to 151973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,790 DEBUG Processing 395/649 atomic regions from SNP 118395 to 118995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,813 DEBUG Processing 588/902 atomic regions from SNP 176130 to 176730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,872 DEBUG Processing 61/233 atomic regions from SNP 18105 to 18706 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:09,880 DEBUG Processing 607/859 atomic regions from SNP 181857 to 182457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,885 DEBUG Processing 475/1135 atomic regions from SNP 142272 to 142872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,955 DEBUG Processing 506/1024 atomic regions from SNP 151673 to 152273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,038 DEBUG Processing 396/649 atomic regions from SNP 118695 to 119295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,102 DEBUG Processing 589/902 atomic regions from SNP 176430 to 177030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,112 DEBUG Processing 62/233 atomic regions from SNP 18406 to 19007 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:10,167 DEBUG Processing 608/859 atomic regions from SNP 182157 to 182757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,184 DEBUG Processing 476/1135 atomic regions from SNP 142572 to 143172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,241 DEBUG Processing 507/1024 atomic regions from SNP 151973 to 152573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,277 DEBUG Processing 397/649 atomic regions from SNP 118995 to 119595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,347 DEBUG Processing 63/233 atomic regions from SNP 18707 to 19308 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:10,361 DEBUG Processing 590/902 atomic regions from SNP 176730 to 177330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,413 DEBUG Processing 609/859 atomic regions from SNP 182457 to 183057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,463 DEBUG Processing 477/1135 atomic regions from SNP 142872 to 143472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,509 DEBUG Processing 508/1024 atomic regions from SNP 152273 to 152873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,510 DEBUG Processing 398/649 atomic regions from SNP 119295 to 119895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,581 DEBUG Processing 64/233 atomic regions from SNP 19008 to 19609 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:10,616 DEBUG Processing 591/902 atomic regions from SNP 177030 to 177630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,665 DEBUG Processing 610/859 atomic regions from SNP 182757 to 183357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,743 DEBUG Processing 478/1135 atomic regions from SNP 143172 to 143772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,748 DEBUG Processing 399/649 atomic regions from SNP 119595 to 120195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,778 DEBUG Processing 509/1024 atomic regions from SNP 152573 to 153173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,806 DEBUG Processing 65/233 atomic regions from SNP 19309 to 19910 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:10,867 DEBUG Processing 592/902 atomic regions from SNP 177330 to 177930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,913 DEBUG Processing 611/859 atomic regions from SNP 183057 to 183657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,987 DEBUG Processing 400/649 atomic regions from SNP 119895 to 120495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,025 DEBUG Processing 479/1135 atomic regions from SNP 143472 to 144072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,032 DEBUG Processing 66/233 atomic regions from SNP 19610 to 20211 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:11,048 DEBUG Processing 510/1024 atomic regions from SNP 152873 to 153473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,126 DEBUG Processing 593/902 atomic regions from SNP 177630 to 178230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,159 DEBUG Processing 612/859 atomic regions from SNP 183357 to 183957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,230 DEBUG Processing 401/649 atomic regions from SNP 120195 to 120795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,264 DEBUG Processing 67/233 atomic regions from SNP 19911 to 20512 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:11,313 DEBUG Processing 480/1135 atomic regions from SNP 143772 to 144372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,327 DEBUG Processing 511/1024 atomic regions from SNP 153173 to 153773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,382 DEBUG Processing 594/902 atomic regions from SNP 177930 to 178530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,417 DEBUG Processing 613/859 atomic regions from SNP 183657 to 184257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,475 DEBUG Processing 402/649 atomic regions from SNP 120495 to 121095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,498 DEBUG Processing 68/233 atomic regions from SNP 20212 to 20813 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:11,601 DEBUG Processing 481/1135 atomic regions from SNP 144072 to 144672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,603 DEBUG Processing 512/1024 atomic regions from SNP 153473 to 154073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,635 DEBUG Processing 595/902 atomic regions from SNP 178230 to 178830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,663 DEBUG Processing 614/859 atomic regions from SNP 183957 to 184557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,712 DEBUG Processing 403/649 atomic regions from SNP 120795 to 121395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,717 DEBUG Processing 69/233 atomic regions from SNP 20513 to 21114 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:11,878 DEBUG Processing 513/1024 atomic regions from SNP 153773 to 154373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,905 DEBUG Processing 596/902 atomic regions from SNP 178530 to 179130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,909 DEBUG Processing 615/859 atomic regions from SNP 184257 to 184857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,913 DEBUG Processing 482/1135 atomic regions from SNP 144372 to 144972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,941 DEBUG Processing 70/233 atomic regions from SNP 20814 to 21415 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:11,950 DEBUG Processing 404/649 atomic regions from SNP 121095 to 121695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,152 DEBUG Processing 514/1024 atomic regions from SNP 154073 to 154673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,156 DEBUG Processing 616/859 atomic regions from SNP 184557 to 185157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,170 DEBUG Processing 71/233 atomic regions from SNP 21115 to 21716 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:12,190 DEBUG Processing 597/902 atomic regions from SNP 178830 to 179430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,193 DEBUG Processing 405/649 atomic regions from SNP 121395 to 121995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,220 DEBUG Processing 483/1135 atomic regions from SNP 144672 to 145272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,407 DEBUG Processing 72/233 atomic regions from SNP 21416 to 22017 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:12,426 DEBUG Processing 617/859 atomic regions from SNP 184857 to 185457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,428 DEBUG Processing 515/1024 atomic regions from SNP 154373 to 154973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,440 DEBUG Processing 406/649 atomic regions from SNP 121695 to 122295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,464 DEBUG Processing 598/902 atomic regions from SNP 179130 to 179730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,523 DEBUG Processing 484/1135 atomic regions from SNP 144972 to 145572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,639 DEBUG Processing 73/233 atomic regions from SNP 21717 to 22318 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:12,691 DEBUG Processing 407/649 atomic regions from SNP 121995 to 122595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,702 DEBUG Processing 618/859 atomic regions from SNP 185157 to 185757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,705 DEBUG Processing 516/1024 atomic regions from SNP 154673 to 155273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,734 DEBUG Processing 599/902 atomic regions from SNP 179430 to 180030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,810 DEBUG Processing 485/1135 atomic regions from SNP 145272 to 145872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,861 DEBUG Processing 74/233 atomic regions from SNP 22018 to 22619 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:12,941 DEBUG Processing 408/649 atomic regions from SNP 122295 to 122895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,956 DEBUG Processing 619/859 atomic regions from SNP 185457 to 186057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,988 DEBUG Processing 517/1024 atomic regions from SNP 154973 to 155573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,013 DEBUG Processing 600/902 atomic regions from SNP 179730 to 180330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,087 DEBUG Processing 75/233 atomic regions from SNP 22319 to 22920 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:13,102 DEBUG Processing 486/1135 atomic regions from SNP 145572 to 146172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,182 DEBUG Processing 409/649 atomic regions from SNP 122595 to 123195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,205 DEBUG Processing 620/859 atomic regions from SNP 185757 to 186357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,288 DEBUG Processing 518/1024 atomic regions from SNP 155273 to 155873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,302 DEBUG Processing 601/902 atomic regions from SNP 180030 to 180630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,319 DEBUG Processing 76/233 atomic regions from SNP 22620 to 23221 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:13,410 DEBUG Processing 487/1135 atomic regions from SNP 145872 to 146472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,427 DEBUG Processing 410/649 atomic regions from SNP 122895 to 123495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,458 DEBUG Processing 621/859 atomic regions from SNP 186057 to 186657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,555 DEBUG Processing 77/233 atomic regions from SNP 22921 to 23522 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:13,582 DEBUG Processing 519/1024 atomic regions from SNP 155573 to 156173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,600 DEBUG Processing 602/902 atomic regions from SNP 180330 to 180930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,696 DEBUG Processing 411/649 atomic regions from SNP 123195 to 123795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,705 DEBUG Processing 622/859 atomic regions from SNP 186357 to 186957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,725 DEBUG Processing 488/1135 atomic regions from SNP 146172 to 146772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,783 DEBUG Processing 78/233 atomic regions from SNP 23222 to 23823 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:13,884 DEBUG Processing 520/1024 atomic regions from SNP 155873 to 156473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,894 DEBUG Processing 603/902 atomic regions from SNP 180630 to 181230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,952 DEBUG Processing 412/649 atomic regions from SNP 123495 to 124095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,952 DEBUG Processing 623/859 atomic regions from SNP 186657 to 187257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,005 DEBUG Processing 79/233 atomic regions from SNP 23523 to 24124 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:14,043 DEBUG Processing 489/1135 atomic regions from SNP 146472 to 147072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,183 DEBUG Processing 521/1024 atomic regions from SNP 156173 to 156773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,183 DEBUG Processing 604/902 atomic regions from SNP 180930 to 181530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,194 DEBUG Processing 624/859 atomic regions from SNP 186957 to 187557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,201 DEBUG Processing 413/649 atomic regions from SNP 123795 to 124395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,242 DEBUG Processing 80/233 atomic regions from SNP 23824 to 24425 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:14,353 DEBUG Processing 490/1135 atomic regions from SNP 146772 to 147372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,440 DEBUG Processing 625/859 atomic regions from SNP 187257 to 187857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,449 DEBUG Processing 414/649 atomic regions from SNP 124095 to 124695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,470 DEBUG Processing 605/902 atomic regions from SNP 181230 to 181830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,484 DEBUG Processing 81/233 atomic regions from SNP 24125 to 24726 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:14,487 DEBUG Processing 522/1024 atomic regions from SNP 156473 to 157073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,644 DEBUG Processing 491/1135 atomic regions from SNP 147072 to 147672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,691 DEBUG Processing 626/859 atomic regions from SNP 187557 to 188157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,718 DEBUG Processing 82/233 atomic regions from SNP 24426 to 25027 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:14,722 DEBUG Processing 415/649 atomic regions from SNP 124395 to 124995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,748 DEBUG Processing 606/902 atomic regions from SNP 181530 to 182130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,788 DEBUG Processing 523/1024 atomic regions from SNP 156773 to 157373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,926 DEBUG Processing 492/1135 atomic regions from SNP 147372 to 147972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,949 DEBUG Processing 83/233 atomic regions from SNP 24727 to 25328 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:14,966 DEBUG Processing 627/859 atomic regions from SNP 187857 to 188457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,991 DEBUG Processing 416/649 atomic regions from SNP 124695 to 125295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,025 DEBUG Processing 607/902 atomic regions from SNP 181830 to 182430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,075 DEBUG Processing 524/1024 atomic regions from SNP 157073 to 157673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,176 DEBUG Processing 84/233 atomic regions from SNP 25028 to 25629 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:15,225 DEBUG Processing 493/1135 atomic regions from SNP 147672 to 148272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,247 DEBUG Processing 628/859 atomic regions from SNP 188157 to 188757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,268 DEBUG Processing 417/649 atomic regions from SNP 124995 to 125595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,288 DEBUG Processing 608/902 atomic regions from SNP 182130 to 182730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,371 DEBUG Processing 525/1024 atomic regions from SNP 157373 to 157973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,404 DEBUG Processing 85/233 atomic regions from SNP 25329 to 25930 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:15,523 DEBUG Processing 418/649 atomic regions from SNP 125295 to 125895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,528 DEBUG Processing 494/1135 atomic regions from SNP 147972 to 148572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,528 DEBUG Processing 629/859 atomic regions from SNP 188457 to 189057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,537 DEBUG Processing 609/902 atomic regions from SNP 182430 to 183030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,627 DEBUG Processing 86/233 atomic regions from SNP 25630 to 26231 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:15,650 DEBUG Processing 526/1024 atomic regions from SNP 157673 to 158273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,780 DEBUG Processing 419/649 atomic regions from SNP 125595 to 126195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,787 DEBUG Processing 610/902 atomic regions from SNP 182730 to 183330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,802 DEBUG Processing 630/859 atomic regions from SNP 188757 to 189357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,819 DEBUG Processing 495/1135 atomic regions from SNP 148272 to 148872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,852 DEBUG Processing 87/233 atomic regions from SNP 25931 to 26532 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:15,955 DEBUG Processing 527/1024 atomic regions from SNP 157973 to 158573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,040 DEBUG Processing 611/902 atomic regions from SNP 183030 to 183630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,055 DEBUG Processing 420/649 atomic regions from SNP 125895 to 126495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,071 DEBUG Processing 631/859 atomic regions from SNP 189057 to 189657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,082 DEBUG Processing 88/233 atomic regions from SNP 26232 to 26833 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:16,134 DEBUG Processing 496/1135 atomic regions from SNP 148572 to 149172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,245 DEBUG Processing 528/1024 atomic regions from SNP 158273 to 158873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,288 DEBUG Processing 612/902 atomic regions from SNP 183330 to 183930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,314 DEBUG Processing 89/233 atomic regions from SNP 26533 to 27134 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:16,326 DEBUG Processing 421/649 atomic regions from SNP 126195 to 126795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,349 DEBUG Processing 632/859 atomic regions from SNP 189357 to 189957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,446 DEBUG Processing 497/1135 atomic regions from SNP 148872 to 149472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,534 DEBUG Processing 613/902 atomic regions from SNP 183630 to 184230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,539 DEBUG Processing 529/1024 atomic regions from SNP 158573 to 159173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,541 DEBUG Processing 90/233 atomic regions from SNP 26834 to 27435 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:16,580 DEBUG Processing 422/649 atomic regions from SNP 126495 to 127095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,629 DEBUG Processing 633/859 atomic regions from SNP 189657 to 190257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,749 DEBUG Processing 498/1135 atomic regions from SNP 149172 to 149772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,768 DEBUG Processing 91/233 atomic regions from SNP 27135 to 27736 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:16,782 DEBUG Processing 614/902 atomic regions from SNP 183930 to 184530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,842 DEBUG Processing 530/1024 atomic regions from SNP 158873 to 159473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,859 DEBUG Processing 423/649 atomic regions from SNP 126795 to 127395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,909 DEBUG Processing 634/859 atomic regions from SNP 189957 to 190557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,999 DEBUG Processing 92/233 atomic regions from SNP 27436 to 28037 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:17,031 DEBUG Processing 615/902 atomic regions from SNP 184230 to 184830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,037 DEBUG Processing 499/1135 atomic regions from SNP 149472 to 150072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,121 DEBUG Processing 531/1024 atomic regions from SNP 159173 to 159773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,130 DEBUG Processing 424/649 atomic regions from SNP 127095 to 127695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,191 DEBUG Processing 635/859 atomic regions from SNP 190257 to 190857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,235 DEBUG Processing 93/233 atomic regions from SNP 27737 to 28338 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:17,286 DEBUG Processing 616/902 atomic regions from SNP 184530 to 185130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,349 DEBUG Processing 500/1135 atomic regions from SNP 149772 to 150372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,390 DEBUG Processing 425/649 atomic regions from SNP 127395 to 127995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,401 DEBUG Processing 532/1024 atomic regions from SNP 159473 to 160073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,464 DEBUG Processing 94/233 atomic regions from SNP 28038 to 28639 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:17,478 DEBUG Processing 636/859 atomic regions from SNP 190557 to 191157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,536 DEBUG Processing 617/902 atomic regions from SNP 184830 to 185430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,645 DEBUG Processing 426/649 atomic regions from SNP 127695 to 128295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,646 DEBUG Processing 501/1135 atomic regions from SNP 150072 to 150672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,679 DEBUG Processing 533/1024 atomic regions from SNP 159773 to 160373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,686 DEBUG Processing 95/233 atomic regions from SNP 28339 to 28940 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:17,757 DEBUG Processing 637/859 atomic regions from SNP 190857 to 191457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,788 DEBUG Processing 618/902 atomic regions from SNP 185130 to 185730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,910 DEBUG Processing 427/649 atomic regions from SNP 127995 to 128595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,913 DEBUG Processing 96/233 atomic regions from SNP 28640 to 29241 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:17,940 DEBUG Processing 502/1135 atomic regions from SNP 150372 to 150972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,953 DEBUG Processing 534/1024 atomic regions from SNP 160073 to 160673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,032 DEBUG Processing 619/902 atomic regions from SNP 185430 to 186030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,043 DEBUG Processing 638/859 atomic regions from SNP 191157 to 191757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,147 DEBUG Processing 97/233 atomic regions from SNP 28941 to 29542 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:18,187 DEBUG Processing 428/649 atomic regions from SNP 128295 to 128895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,223 DEBUG Processing 503/1135 atomic regions from SNP 150672 to 151272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,227 DEBUG Processing 535/1024 atomic regions from SNP 160373 to 160973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,273 DEBUG Processing 620/902 atomic regions from SNP 185730 to 186330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,317 DEBUG Processing 639/859 atomic regions from SNP 191457 to 192057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,375 DEBUG Processing 98/233 atomic regions from SNP 29242 to 29843 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:18,443 DEBUG Processing 429/649 atomic regions from SNP 128595 to 129195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,504 DEBUG Processing 536/1024 atomic regions from SNP 160673 to 161273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,506 DEBUG Processing 504/1135 atomic regions from SNP 150972 to 151572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,520 DEBUG Processing 621/902 atomic regions from SNP 186030 to 186630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,573 DEBUG Processing 640/859 atomic regions from SNP 191757 to 192357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,600 DEBUG Processing 99/233 atomic regions from SNP 29543 to 30144 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:18,694 DEBUG Processing 430/649 atomic regions from SNP 128895 to 129495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,775 DEBUG Processing 622/902 atomic regions from SNP 186330 to 186930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,776 DEBUG Processing 537/1024 atomic regions from SNP 160973 to 161573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,786 DEBUG Processing 505/1135 atomic regions from SNP 151272 to 151872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,828 DEBUG Processing 100/233 atomic regions from SNP 29844 to 30445 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:18,847 DEBUG Processing 641/859 atomic regions from SNP 192057 to 192657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,949 DEBUG Processing 431/649 atomic regions from SNP 129195 to 129795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,034 DEBUG Processing 623/902 atomic regions from SNP 186630 to 187230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,045 DEBUG Processing 538/1024 atomic regions from SNP 161273 to 161873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,061 DEBUG Processing 101/233 atomic regions from SNP 30145 to 30746 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:19,068 DEBUG Processing 506/1135 atomic regions from SNP 151572 to 152172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,108 DEBUG Processing 642/859 atomic regions from SNP 192357 to 192957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,196 DEBUG Processing 432/649 atomic regions from SNP 129495 to 130095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,292 DEBUG Processing 624/902 atomic regions from SNP 186930 to 187530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,299 DEBUG Processing 102/233 atomic regions from SNP 30446 to 31047 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:19,319 DEBUG Processing 539/1024 atomic regions from SNP 161573 to 162173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,350 DEBUG Processing 507/1135 atomic regions from SNP 151872 to 152472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,366 DEBUG Processing 643/859 atomic regions from SNP 192657 to 193257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,429 DEBUG Processing 433/649 atomic regions from SNP 129795 to 130395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,528 DEBUG Processing 103/233 atomic regions from SNP 30747 to 31348 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:19,543 DEBUG Processing 625/902 atomic regions from SNP 187230 to 187830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,582 DEBUG Processing 540/1024 atomic regions from SNP 161873 to 162473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,616 DEBUG Processing 644/859 atomic regions from SNP 192957 to 193557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,632 DEBUG Processing 508/1135 atomic regions from SNP 152172 to 152772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,669 DEBUG Processing 434/649 atomic regions from SNP 130095 to 130695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,753 DEBUG Processing 104/233 atomic regions from SNP 31048 to 31649 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:19,789 DEBUG Processing 626/902 atomic regions from SNP 187530 to 188130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,850 DEBUG Processing 541/1024 atomic regions from SNP 162173 to 162773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,863 DEBUG Processing 645/859 atomic regions from SNP 193257 to 193857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,919 DEBUG Processing 509/1135 atomic regions from SNP 152472 to 153072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,947 DEBUG Processing 435/649 atomic regions from SNP 130395 to 130995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,980 DEBUG Processing 105/233 atomic regions from SNP 31349 to 31950 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:20,030 DEBUG Processing 627/902 atomic regions from SNP 187830 to 188430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,103 DEBUG Processing 646/859 atomic regions from SNP 193557 to 194157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,124 DEBUG Processing 542/1024 atomic regions from SNP 162473 to 163073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,212 DEBUG Processing 510/1135 atomic regions from SNP 152772 to 153372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,217 DEBUG Processing 106/233 atomic regions from SNP 31650 to 32251 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:20,231 DEBUG Processing 436/649 atomic regions from SNP 130695 to 131295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,281 DEBUG Processing 628/902 atomic regions from SNP 188130 to 188730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,348 DEBUG Processing 647/859 atomic regions from SNP 193857 to 194457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,397 DEBUG Processing 543/1024 atomic regions from SNP 162773 to 163373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,451 DEBUG Processing 107/233 atomic regions from SNP 31951 to 32552 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:20,497 DEBUG Processing 437/649 atomic regions from SNP 130995 to 131595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,498 DEBUG Processing 511/1135 atomic regions from SNP 153072 to 153672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,538 DEBUG Processing 629/902 atomic regions from SNP 188430 to 189030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,618 DEBUG Processing 648/859 atomic regions from SNP 194157 to 194757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,669 DEBUG Processing 544/1024 atomic regions from SNP 163073 to 163673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,680 DEBUG Processing 108/233 atomic regions from SNP 32252 to 32853 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:20,750 DEBUG Processing 438/649 atomic regions from SNP 131295 to 131895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,798 DEBUG Processing 630/902 atomic regions from SNP 188730 to 189330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,800 DEBUG Processing 512/1135 atomic regions from SNP 153372 to 153972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,895 DEBUG Processing 649/859 atomic regions from SNP 194457 to 195057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,903 DEBUG Processing 109/233 atomic regions from SNP 32553 to 33154 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:20,942 DEBUG Processing 545/1024 atomic regions from SNP 163373 to 163973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,991 DEBUG Processing 439/649 atomic regions from SNP 131595 to 132195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,056 DEBUG Processing 631/902 atomic regions from SNP 189030 to 189630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,105 DEBUG Processing 513/1135 atomic regions from SNP 153672 to 154272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,131 DEBUG Processing 110/233 atomic regions from SNP 32854 to 33455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:21,167 DEBUG Processing 650/859 atomic regions from SNP 194757 to 195357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,220 DEBUG Processing 546/1024 atomic regions from SNP 163673 to 164273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,223 DEBUG Processing 440/649 atomic regions from SNP 131895 to 132495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,310 DEBUG Processing 632/902 atomic regions from SNP 189330 to 189930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,367 DEBUG Processing 111/233 atomic regions from SNP 33155 to 33756 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:21,403 DEBUG Processing 514/1135 atomic regions from SNP 153972 to 154572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,423 DEBUG Processing 651/859 atomic regions from SNP 195057 to 195657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,459 DEBUG Processing 441/649 atomic regions from SNP 132195 to 132795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,497 DEBUG Processing 547/1024 atomic regions from SNP 163973 to 164573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,559 DEBUG Processing 633/902 atomic regions from SNP 189630 to 190230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,603 DEBUG Processing 112/233 atomic regions from SNP 33456 to 34057 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:21,675 DEBUG Processing 652/859 atomic regions from SNP 195357 to 195957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,706 DEBUG Processing 442/649 atomic regions from SNP 132495 to 133095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,716 DEBUG Processing 515/1135 atomic regions from SNP 154272 to 154872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,775 DEBUG Processing 548/1024 atomic regions from SNP 164273 to 164873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,808 DEBUG Processing 634/902 atomic regions from SNP 189930 to 190530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,834 DEBUG Processing 113/233 atomic regions from SNP 33757 to 34358 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:21,928 DEBUG Processing 653/859 atomic regions from SNP 195657 to 196257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,959 DEBUG Processing 443/649 atomic regions from SNP 132795 to 133395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,013 DEBUG Processing 516/1135 atomic regions from SNP 154572 to 155172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,059 DEBUG Processing 549/1024 atomic regions from SNP 164573 to 165173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,065 DEBUG Processing 635/902 atomic regions from SNP 190230 to 190830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,071 DEBUG Processing 114/233 atomic regions from SNP 34058 to 34659 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:22,179 DEBUG Processing 654/859 atomic regions from SNP 195957 to 196557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,207 DEBUG Processing 444/649 atomic regions from SNP 133095 to 133695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,303 DEBUG Processing 115/233 atomic regions from SNP 34359 to 34960 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:22,303 DEBUG Processing 517/1135 atomic regions from SNP 154872 to 155472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,317 DEBUG Processing 636/902 atomic regions from SNP 190530 to 191130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,338 DEBUG Processing 550/1024 atomic regions from SNP 164873 to 165473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,419 DEBUG Processing 655/859 atomic regions from SNP 196257 to 196857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,480 DEBUG Processing 445/649 atomic regions from SNP 133395 to 133995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,538 DEBUG Processing 116/233 atomic regions from SNP 34660 to 35261 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:22,577 DEBUG Processing 637/902 atomic regions from SNP 190830 to 191430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,611 DEBUG Processing 518/1135 atomic regions from SNP 155172 to 155772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,625 DEBUG Processing 551/1024 atomic regions from SNP 165173 to 165773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,676 DEBUG Processing 656/859 atomic regions from SNP 196557 to 197157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,754 DEBUG Processing 446/649 atomic regions from SNP 133695 to 134295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,771 DEBUG Processing 117/233 atomic regions from SNP 34961 to 35562 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:22,828 DEBUG Processing 638/902 atomic regions from SNP 191130 to 191730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,898 DEBUG Processing 552/1024 atomic regions from SNP 165473 to 166073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,932 DEBUG Processing 519/1135 atomic regions from SNP 155472 to 156072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,938 DEBUG Processing 657/859 atomic regions from SNP 196857 to 197457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,004 DEBUG Processing 118/233 atomic regions from SNP 35262 to 35863 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:23,017 DEBUG Processing 447/649 atomic regions from SNP 133995 to 134595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,081 DEBUG Processing 639/902 atomic regions from SNP 191430 to 192030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,165 DEBUG Processing 553/1024 atomic regions from SNP 165773 to 166373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,181 DEBUG Processing 658/859 atomic regions from SNP 197157 to 197757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,236 DEBUG Processing 119/233 atomic regions from SNP 35563 to 36164 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:23,247 DEBUG Processing 520/1135 atomic regions from SNP 155772 to 156372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,264 DEBUG Processing 448/649 atomic regions from SNP 134295 to 134895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,336 DEBUG Processing 640/902 atomic regions from SNP 191730 to 192330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,423 DEBUG Processing 659/859 atomic regions from SNP 197457 to 198057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,432 DEBUG Processing 554/1024 atomic regions from SNP 166073 to 166673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,461 DEBUG Processing 120/233 atomic regions from SNP 35864 to 36465 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:23,510 DEBUG Processing 449/649 atomic regions from SNP 134595 to 135195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,557 DEBUG Processing 521/1135 atomic regions from SNP 156072 to 156672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,594 DEBUG Processing 641/902 atomic regions from SNP 192030 to 192630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,665 DEBUG Processing 660/859 atomic regions from SNP 197757 to 198357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,685 DEBUG Processing 121/233 atomic regions from SNP 36165 to 36766 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:23,700 DEBUG Processing 555/1024 atomic regions from SNP 166373 to 166973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,748 DEBUG Processing 450/649 atomic regions from SNP 134895 to 135495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,851 DEBUG Processing 642/902 atomic regions from SNP 192330 to 192930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,855 DEBUG Processing 522/1135 atomic regions from SNP 156372 to 156972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,906 DEBUG Processing 661/859 atomic regions from SNP 198057 to 198657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,911 DEBUG Processing 122/233 atomic regions from SNP 36466 to 37067 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:23,965 DEBUG Processing 556/1024 atomic regions from SNP 166673 to 167273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,981 DEBUG Processing 451/649 atomic regions from SNP 135195 to 135795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,108 DEBUG Processing 643/902 atomic regions from SNP 192630 to 193230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,150 DEBUG Processing 662/859 atomic regions from SNP 198357 to 198957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,160 DEBUG Processing 123/233 atomic regions from SNP 36767 to 37368 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:24,168 DEBUG Processing 523/1135 atomic regions from SNP 156672 to 157272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,213 DEBUG Processing 452/649 atomic regions from SNP 135495 to 136095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,232 DEBUG Processing 557/1024 atomic regions from SNP 166973 to 167573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,363 DEBUG Processing 644/902 atomic regions from SNP 192930 to 193530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,395 DEBUG Processing 663/859 atomic regions from SNP 198657 to 199257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,422 DEBUG Processing 124/233 atomic regions from SNP 37068 to 37669 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:24,451 DEBUG Processing 453/649 atomic regions from SNP 135795 to 136395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,478 DEBUG Processing 524/1135 atomic regions from SNP 156972 to 157572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,501 DEBUG Processing 558/1024 atomic regions from SNP 167273 to 167873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,633 DEBUG Processing 645/902 atomic regions from SNP 193230 to 193830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,640 DEBUG Processing 664/859 atomic regions from SNP 198957 to 199557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,656 DEBUG Processing 125/233 atomic regions from SNP 37369 to 37970 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:24,711 DEBUG Processing 454/649 atomic regions from SNP 136095 to 136695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,767 DEBUG Processing 559/1024 atomic regions from SNP 167573 to 168173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,780 DEBUG Processing 525/1135 atomic regions from SNP 157272 to 157872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,887 DEBUG Processing 665/859 atomic regions from SNP 199257 to 199857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,888 DEBUG Processing 126/233 atomic regions from SNP 37670 to 38271 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:24,899 DEBUG Processing 646/902 atomic regions from SNP 193530 to 194130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,967 DEBUG Processing 455/649 atomic regions from SNP 136395 to 136995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,034 DEBUG Processing 560/1024 atomic regions from SNP 167873 to 168473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,075 DEBUG Processing 526/1135 atomic regions from SNP 157572 to 158172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,119 DEBUG Processing 127/233 atomic regions from SNP 37971 to 38572 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:25,136 DEBUG Processing 666/859 atomic regions from SNP 199557 to 200157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,150 DEBUG Processing 647/902 atomic regions from SNP 193830 to 194430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,229 DEBUG Processing 456/649 atomic regions from SNP 136695 to 137295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,302 DEBUG Processing 561/1024 atomic regions from SNP 168173 to 168773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,347 DEBUG Processing 128/233 atomic regions from SNP 38272 to 38873 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:25,371 DEBUG Processing 527/1135 atomic regions from SNP 157872 to 158472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,408 DEBUG Processing 667/859 atomic regions from SNP 199857 to 200457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,413 DEBUG Processing 648/902 atomic regions from SNP 194130 to 194730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,477 DEBUG Processing 457/649 atomic regions from SNP 136995 to 137595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,569 DEBUG Processing 562/1024 atomic regions from SNP 168473 to 169073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,574 DEBUG Processing 129/233 atomic regions from SNP 38573 to 39174 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:25,671 DEBUG Processing 668/859 atomic regions from SNP 200157 to 200757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,677 DEBUG Processing 528/1135 atomic regions from SNP 158172 to 158772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,701 DEBUG Processing 649/902 atomic regions from SNP 194430 to 195030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,725 DEBUG Processing 458/649 atomic regions from SNP 137295 to 137895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,793 DEBUG Processing 130/233 atomic regions from SNP 38874 to 39475 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:25,835 DEBUG Processing 563/1024 atomic regions from SNP 168773 to 169373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,930 DEBUG Processing 669/859 atomic regions from SNP 200457 to 201057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,983 DEBUG Processing 459/649 atomic regions from SNP 137595 to 138195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,984 DEBUG Processing 650/902 atomic regions from SNP 194730 to 195330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,987 DEBUG Processing 529/1135 atomic regions from SNP 158472 to 159072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,059 DEBUG Processing 131/233 atomic regions from SNP 39175 to 39776 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:26,103 DEBUG Processing 564/1024 atomic regions from SNP 169073 to 169673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,206 DEBUG Processing 670/859 atomic regions from SNP 200757 to 201357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,259 DEBUG Processing 460/649 atomic regions from SNP 137895 to 138495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,269 DEBUG Processing 651/902 atomic regions from SNP 195030 to 195630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,290 DEBUG Processing 132/233 atomic regions from SNP 39476 to 40077 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:26,300 DEBUG Processing 530/1135 atomic regions from SNP 158772 to 159372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,378 DEBUG Processing 565/1024 atomic regions from SNP 169373 to 169973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,481 DEBUG Processing 671/859 atomic regions from SNP 201057 to 201657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,512 DEBUG Processing 461/649 atomic regions from SNP 138195 to 138795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,522 DEBUG Processing 133/233 atomic regions from SNP 39777 to 40378 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:26,542 DEBUG Processing 652/902 atomic regions from SNP 195330 to 195930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,613 DEBUG Processing 531/1135 atomic regions from SNP 159072 to 159672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,655 DEBUG Processing 566/1024 atomic regions from SNP 169673 to 170273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,736 DEBUG Processing 672/859 atomic regions from SNP 201357 to 201957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,755 DEBUG Processing 134/233 atomic regions from SNP 40078 to 40679 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:26,759 DEBUG Processing 462/649 atomic regions from SNP 138495 to 139095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,795 DEBUG Processing 653/902 atomic regions from SNP 195630 to 196230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,927 DEBUG Processing 532/1135 atomic regions from SNP 159372 to 159972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,936 DEBUG Processing 567/1024 atomic regions from SNP 169973 to 170573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,979 DEBUG Processing 673/859 atomic regions from SNP 201657 to 202257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,984 DEBUG Processing 135/233 atomic regions from SNP 40379 to 40980 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:27,001 DEBUG Processing 463/649 atomic regions from SNP 138795 to 139395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,045 DEBUG Processing 654/902 atomic regions from SNP 195930 to 196530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,211 DEBUG Processing 136/233 atomic regions from SNP 40680 to 41281 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:27,213 DEBUG Processing 568/1024 atomic regions from SNP 170273 to 170873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,239 DEBUG Processing 533/1135 atomic regions from SNP 159672 to 160272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,240 DEBUG Processing 464/649 atomic regions from SNP 139095 to 139695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,261 DEBUG Processing 674/859 atomic regions from SNP 201957 to 202557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,293 DEBUG Processing 655/902 atomic regions from SNP 196230 to 196830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,441 DEBUG Processing 137/233 atomic regions from SNP 40981 to 41582 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:27,482 DEBUG Processing 569/1024 atomic regions from SNP 170573 to 171173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,504 DEBUG Processing 465/649 atomic regions from SNP 139395 to 139995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,537 DEBUG Processing 656/902 atomic regions from SNP 196530 to 197130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,538 DEBUG Processing 675/859 atomic regions from SNP 202257 to 202857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,555 DEBUG Processing 534/1135 atomic regions from SNP 159972 to 160572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,676 DEBUG Processing 138/233 atomic regions from SNP 41282 to 41883 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:27,748 DEBUG Processing 570/1024 atomic regions from SNP 170873 to 171473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,771 DEBUG Processing 466/649 atomic regions from SNP 139695 to 140295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,782 DEBUG Processing 657/902 atomic regions from SNP 196830 to 197430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,813 DEBUG Processing 676/859 atomic regions from SNP 202557 to 203157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,873 DEBUG Processing 535/1135 atomic regions from SNP 160272 to 160872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,901 DEBUG Processing 139/233 atomic regions from SNP 41583 to 42184 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:28,011 DEBUG Processing 571/1024 atomic regions from SNP 171173 to 171773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,035 DEBUG Processing 658/902 atomic regions from SNP 197130 to 197730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,037 DEBUG Processing 467/649 atomic regions from SNP 139995 to 140595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,094 DEBUG Processing 677/859 atomic regions from SNP 202857 to 203457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,122 DEBUG Processing 140/233 atomic regions from SNP 41884 to 42485 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:28,166 DEBUG Processing 536/1135 atomic regions from SNP 160572 to 161172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,277 DEBUG Processing 572/1024 atomic regions from SNP 171473 to 172073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,294 DEBUG Processing 659/902 atomic regions from SNP 197430 to 198030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,315 DEBUG Processing 468/649 atomic regions from SNP 140295 to 140895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,353 DEBUG Processing 141/233 atomic regions from SNP 42185 to 42786 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:28,369 DEBUG Processing 678/859 atomic regions from SNP 203157 to 203757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,449 DEBUG Processing 537/1135 atomic regions from SNP 160872 to 161472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,552 DEBUG Processing 573/1024 atomic regions from SNP 171773 to 172373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,559 DEBUG Processing 660/902 atomic regions from SNP 197730 to 198330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,586 DEBUG Processing 469/649 atomic regions from SNP 140595 to 141195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,597 DEBUG Processing 142/233 atomic regions from SNP 42486 to 43087 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:28,643 DEBUG Processing 679/859 atomic regions from SNP 203457 to 204057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,746 DEBUG Processing 538/1135 atomic regions from SNP 161172 to 161772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,822 DEBUG Processing 661/902 atomic regions from SNP 198030 to 198630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,832 DEBUG Processing 574/1024 atomic regions from SNP 172073 to 172673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,838 DEBUG Processing 143/233 atomic regions from SNP 42787 to 43388 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:28,855 DEBUG Processing 470/649 atomic regions from SNP 140895 to 141495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,918 DEBUG Processing 680/859 atomic regions from SNP 203757 to 204357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,033 DEBUG Processing 539/1135 atomic regions from SNP 161472 to 162072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,076 DEBUG Processing 144/233 atomic regions from SNP 43088 to 43689 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:29,079 DEBUG Processing 662/902 atomic regions from SNP 198330 to 198930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,110 DEBUG Processing 471/649 atomic regions from SNP 141195 to 141795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,113 DEBUG Processing 575/1024 atomic regions from SNP 172373 to 172973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,190 DEBUG Processing 681/859 atomic regions from SNP 204057 to 204657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,313 DEBUG Processing 145/233 atomic regions from SNP 43389 to 43990 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:29,323 DEBUG Processing 540/1135 atomic regions from SNP 161772 to 162372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,339 DEBUG Processing 663/902 atomic regions from SNP 198630 to 199230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,359 DEBUG Processing 472/649 atomic regions from SNP 141495 to 142095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,391 DEBUG Processing 576/1024 atomic regions from SNP 172673 to 173273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,455 DEBUG Processing 682/859 atomic regions from SNP 204357 to 204957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,551 DEBUG Processing 146/233 atomic regions from SNP 43690 to 44291 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:29,600 DEBUG Processing 664/902 atomic regions from SNP 198930 to 199530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,612 DEBUG Processing 473/649 atomic regions from SNP 141795 to 142395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,613 DEBUG Processing 541/1135 atomic regions from SNP 162072 to 162672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,672 DEBUG Processing 577/1024 atomic regions from SNP 172973 to 173573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,728 DEBUG Processing 683/859 atomic regions from SNP 204657 to 205257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,777 DEBUG Processing 147/233 atomic regions from SNP 43991 to 44592 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:29,860 DEBUG Processing 665/902 atomic regions from SNP 199230 to 199830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,888 DEBUG Processing 474/649 atomic regions from SNP 142095 to 142695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,903 DEBUG Processing 542/1135 atomic regions from SNP 162372 to 162972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,962 DEBUG Processing 578/1024 atomic regions from SNP 173273 to 173873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,995 DEBUG Processing 684/859 atomic regions from SNP 204957 to 205557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,000 DEBUG Processing 148/233 atomic regions from SNP 44292 to 44893 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:30,107 DEBUG Processing 666/902 atomic regions from SNP 199530 to 200130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,155 DEBUG Processing 475/649 atomic regions from SNP 142395 to 142995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,194 DEBUG Processing 543/1135 atomic regions from SNP 162672 to 163272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,231 DEBUG Processing 149/233 atomic regions from SNP 44593 to 45194 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:30,248 DEBUG Processing 579/1024 atomic regions from SNP 173573 to 174173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,271 DEBUG Processing 685/859 atomic regions from SNP 205257 to 205857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,347 DEBUG Processing 667/902 atomic regions from SNP 199830 to 200430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,407 DEBUG Processing 476/649 atomic regions from SNP 142695 to 143295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,476 DEBUG Processing 150/233 atomic regions from SNP 44894 to 45495 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:30,487 DEBUG Processing 544/1135 atomic regions from SNP 162972 to 163572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,539 DEBUG Processing 580/1024 atomic regions from SNP 173873 to 174473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,567 DEBUG Processing 686/859 atomic regions from SNP 205557 to 206157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,593 DEBUG Processing 668/902 atomic regions from SNP 200130 to 200730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,639 DEBUG Processing 477/649 atomic regions from SNP 142995 to 143595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,713 DEBUG Processing 151/233 atomic regions from SNP 45195 to 45796 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:30,772 DEBUG Processing 545/1135 atomic regions from SNP 163272 to 163872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,829 DEBUG Processing 581/1024 atomic regions from SNP 174173 to 174773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,849 DEBUG Processing 669/902 atomic regions from SNP 200430 to 201030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,854 DEBUG Processing 687/859 atomic regions from SNP 205857 to 206457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,879 DEBUG Processing 478/649 atomic regions from SNP 143295 to 143895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,932 DEBUG Processing 152/233 atomic regions from SNP 45496 to 46097 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:31,052 DEBUG Processing 546/1135 atomic regions from SNP 163572 to 164172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,115 DEBUG Processing 670/902 atomic regions from SNP 200730 to 201330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,123 DEBUG Processing 582/1024 atomic regions from SNP 174473 to 175073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,131 DEBUG Processing 479/649 atomic regions from SNP 143595 to 144195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,136 DEBUG Processing 688/859 atomic regions from SNP 206157 to 206757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,161 DEBUG Processing 153/233 atomic regions from SNP 45797 to 46398 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:31,342 DEBUG Processing 547/1135 atomic regions from SNP 163872 to 164472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,384 DEBUG Processing 671/902 atomic regions from SNP 201030 to 201630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,400 DEBUG Processing 154/233 atomic regions from SNP 46098 to 46699 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:31,407 DEBUG Processing 480/649 atomic regions from SNP 143895 to 144495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,412 DEBUG Processing 689/859 atomic regions from SNP 206457 to 207057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,415 DEBUG Processing 583/1024 atomic regions from SNP 174773 to 175373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,620 DEBUG Processing 548/1135 atomic regions from SNP 164172 to 164772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,641 DEBUG Processing 155/233 atomic regions from SNP 46399 to 47000 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:31,646 DEBUG Processing 672/902 atomic regions from SNP 201330 to 201930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,660 DEBUG Processing 481/649 atomic regions from SNP 144195 to 144795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,683 DEBUG Processing 690/859 atomic regions from SNP 206757 to 207357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,697 DEBUG Processing 584/1024 atomic regions from SNP 175073 to 175673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,877 DEBUG Processing 156/233 atomic regions from SNP 46700 to 47301 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:31,895 DEBUG Processing 549/1135 atomic regions from SNP 164472 to 165072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,908 DEBUG Processing 482/649 atomic regions from SNP 144495 to 145095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,910 DEBUG Processing 673/902 atomic regions from SNP 201630 to 202230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,953 DEBUG Processing 691/859 atomic regions from SNP 207057 to 207657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,976 DEBUG Processing 585/1024 atomic regions from SNP 175373 to 175973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,106 DEBUG Processing 157/233 atomic regions from SNP 47001 to 47602 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:32,154 DEBUG Processing 483/649 atomic regions from SNP 144795 to 145395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,162 DEBUG Processing 674/902 atomic regions from SNP 201930 to 202530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,173 DEBUG Processing 550/1135 atomic regions from SNP 164772 to 165372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,245 DEBUG Processing 692/859 atomic regions from SNP 207357 to 207957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,259 DEBUG Processing 586/1024 atomic regions from SNP 175673 to 176273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,337 DEBUG Processing 158/233 atomic regions from SNP 47302 to 47903 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:32,396 DEBUG Processing 484/649 atomic regions from SNP 145095 to 145695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,415 DEBUG Processing 675/902 atomic regions from SNP 202230 to 202830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,450 DEBUG Processing 551/1135 atomic regions from SNP 165072 to 165672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,534 DEBUG Processing 693/859 atomic regions from SNP 207657 to 208257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,545 DEBUG Processing 587/1024 atomic regions from SNP 175973 to 176573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,569 DEBUG Processing 159/233 atomic regions from SNP 47603 to 48204 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:32,636 DEBUG Processing 485/649 atomic regions from SNP 145395 to 145995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,674 DEBUG Processing 676/902 atomic regions from SNP 202530 to 203130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,726 DEBUG Processing 552/1135 atomic regions from SNP 165372 to 165972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,800 DEBUG Processing 160/233 atomic regions from SNP 47904 to 48505 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:32,822 DEBUG Processing 694/859 atomic regions from SNP 207957 to 208557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,826 DEBUG Processing 588/1024 atomic regions from SNP 176273 to 176873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,881 DEBUG Processing 486/649 atomic regions from SNP 145695 to 146295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,934 DEBUG Processing 677/902 atomic regions from SNP 202830 to 203430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,003 DEBUG Processing 553/1135 atomic regions from SNP 165672 to 166272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,028 DEBUG Processing 161/233 atomic regions from SNP 48205 to 48806 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:33,108 DEBUG Processing 589/1024 atomic regions from SNP 176573 to 177173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,110 DEBUG Processing 695/859 atomic regions from SNP 208257 to 208857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,124 DEBUG Processing 487/649 atomic regions from SNP 145995 to 146595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,220 DEBUG Processing 678/902 atomic regions from SNP 203130 to 203730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,260 DEBUG Processing 162/233 atomic regions from SNP 48506 to 49107 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:33,280 DEBUG Processing 554/1135 atomic regions from SNP 165972 to 166572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,359 DEBUG Processing 488/649 atomic regions from SNP 146295 to 146895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,382 DEBUG Processing 696/859 atomic regions from SNP 208557 to 209157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,387 DEBUG Processing 590/1024 atomic regions from SNP 176873 to 177473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,489 DEBUG Processing 679/902 atomic regions from SNP 203430 to 204030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,495 DEBUG Processing 163/233 atomic regions from SNP 48807 to 49408 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:33,560 DEBUG Processing 555/1135 atomic regions from SNP 166272 to 166872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,596 DEBUG Processing 489/649 atomic regions from SNP 146595 to 147195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,649 DEBUG Processing 697/859 atomic regions from SNP 208857 to 209457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,665 DEBUG Processing 591/1024 atomic regions from SNP 177173 to 177773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,731 DEBUG Processing 164/233 atomic regions from SNP 49108 to 49709 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:33,745 DEBUG Processing 680/902 atomic regions from SNP 203730 to 204330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,842 DEBUG Processing 490/649 atomic regions from SNP 146895 to 147495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,853 DEBUG Processing 556/1135 atomic regions from SNP 166572 to 167172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,909 DEBUG Processing 698/859 atomic regions from SNP 209157 to 209757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,957 DEBUG Processing 592/1024 atomic regions from SNP 177473 to 178073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,967 DEBUG Processing 165/233 atomic regions from SNP 49409 to 50010 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:34,000 DEBUG Processing 681/902 atomic regions from SNP 204030 to 204630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,094 DEBUG Processing 491/649 atomic regions from SNP 147195 to 147795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,153 DEBUG Processing 557/1135 atomic regions from SNP 166872 to 167472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,178 DEBUG Processing 699/859 atomic regions from SNP 209457 to 210057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,201 DEBUG Processing 166/233 atomic regions from SNP 49710 to 50311 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:34,255 DEBUG Processing 682/902 atomic regions from SNP 204330 to 204930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,264 DEBUG Processing 593/1024 atomic regions from SNP 177773 to 178373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,355 DEBUG Processing 492/649 atomic regions from SNP 147495 to 148095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,429 DEBUG Processing 558/1135 atomic regions from SNP 167172 to 167772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,438 DEBUG Processing 167/233 atomic regions from SNP 50011 to 50612 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:34,457 DEBUG Processing 700/859 atomic regions from SNP 209757 to 210357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,528 DEBUG Processing 683/902 atomic regions from SNP 204630 to 205230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,571 DEBUG Processing 594/1024 atomic regions from SNP 178073 to 178673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,620 DEBUG Processing 493/649 atomic regions from SNP 147795 to 148395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,670 DEBUG Processing 168/233 atomic regions from SNP 50312 to 50913 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:34,706 DEBUG Processing 559/1135 atomic regions from SNP 167472 to 168072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,720 DEBUG Processing 701/859 atomic regions from SNP 210057 to 210657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,814 DEBUG Processing 684/902 atomic regions from SNP 204930 to 205530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,871 DEBUG Processing 595/1024 atomic regions from SNP 178373 to 178973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,889 DEBUG Processing 494/649 atomic regions from SNP 148095 to 148695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,905 DEBUG Processing 169/233 atomic regions from SNP 50613 to 51214 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:34,962 DEBUG Processing 702/859 atomic regions from SNP 210357 to 210957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,983 DEBUG Processing 560/1135 atomic regions from SNP 167772 to 168372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,086 DEBUG Processing 685/902 atomic regions from SNP 205230 to 205830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,139 DEBUG Processing 170/233 atomic regions from SNP 50914 to 51515 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:35,155 DEBUG Processing 495/649 atomic regions from SNP 148395 to 148995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,168 DEBUG Processing 596/1024 atomic regions from SNP 178673 to 179273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,207 DEBUG Processing 703/859 atomic regions from SNP 210657 to 211257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,262 DEBUG Processing 561/1135 atomic regions from SNP 168072 to 168672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,337 DEBUG Processing 686/902 atomic regions from SNP 205530 to 206130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,371 DEBUG Processing 171/233 atomic regions from SNP 51215 to 51816 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:35,438 DEBUG Processing 496/649 atomic regions from SNP 148695 to 149295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,457 DEBUG Processing 597/1024 atomic regions from SNP 178973 to 179573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,459 DEBUG Processing 704/859 atomic regions from SNP 210957 to 211557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,542 DEBUG Processing 562/1135 atomic regions from SNP 168372 to 168972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,582 DEBUG Processing 687/902 atomic regions from SNP 205830 to 206430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,598 DEBUG Processing 172/233 atomic regions from SNP 51516 to 52117 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:35,702 DEBUG Processing 497/649 atomic regions from SNP 148995 to 149595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,711 DEBUG Processing 705/859 atomic regions from SNP 211257 to 211857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,736 DEBUG Processing 598/1024 atomic regions from SNP 179273 to 179873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,825 DEBUG Processing 563/1135 atomic regions from SNP 168672 to 169272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,837 DEBUG Processing 688/902 atomic regions from SNP 206130 to 206730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,842 DEBUG Processing 173/233 atomic regions from SNP 51817 to 52418 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:35,960 DEBUG Processing 498/649 atomic regions from SNP 149295 to 149895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,963 DEBUG Processing 706/859 atomic regions from SNP 211557 to 212157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,016 DEBUG Processing 599/1024 atomic regions from SNP 179573 to 180173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,072 DEBUG Processing 174/233 atomic regions from SNP 52118 to 52719 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:36,106 DEBUG Processing 689/902 atomic regions from SNP 206430 to 207030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,107 DEBUG Processing 564/1135 atomic regions from SNP 168972 to 169572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,205 DEBUG Processing 707/859 atomic regions from SNP 211857 to 212457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,206 DEBUG Processing 499/649 atomic regions from SNP 149595 to 150195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,296 DEBUG Processing 600/1024 atomic regions from SNP 179873 to 180473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,300 DEBUG Processing 175/233 atomic regions from SNP 52419 to 53020 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:36,368 DEBUG Processing 690/902 atomic regions from SNP 206730 to 207330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,395 DEBUG Processing 565/1135 atomic regions from SNP 169272 to 169872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,440 DEBUG Processing 708/859 atomic regions from SNP 212157 to 212757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,460 DEBUG Processing 500/649 atomic regions from SNP 149895 to 150495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,527 DEBUG Processing 176/233 atomic regions from SNP 52720 to 53321 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:36,578 DEBUG Processing 601/1024 atomic regions from SNP 180173 to 180773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,641 DEBUG Processing 691/902 atomic regions from SNP 207030 to 207630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,685 DEBUG Processing 709/859 atomic regions from SNP 212457 to 213057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,689 DEBUG Processing 566/1135 atomic regions from SNP 169572 to 170172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,721 DEBUG Processing 501/649 atomic regions from SNP 150195 to 150795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,749 DEBUG Processing 177/233 atomic regions from SNP 53021 to 53622 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:36,851 DEBUG Processing 602/1024 atomic regions from SNP 180473 to 181073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,903 DEBUG Processing 692/902 atomic regions from SNP 207330 to 207930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,938 DEBUG Processing 710/859 atomic regions from SNP 212757 to 213357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,978 DEBUG Processing 567/1135 atomic regions from SNP 169872 to 170472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,979 DEBUG Processing 502/649 atomic regions from SNP 150495 to 151095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,982 DEBUG Processing 178/233 atomic regions from SNP 53322 to 53923 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:37,122 DEBUG Processing 603/1024 atomic regions from SNP 180773 to 181373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,154 DEBUG Processing 693/902 atomic regions from SNP 207630 to 208230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,193 DEBUG Processing 711/859 atomic regions from SNP 213057 to 213657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,216 DEBUG Processing 179/233 atomic regions from SNP 53623 to 54224 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:37,239 DEBUG Processing 503/649 atomic regions from SNP 150795 to 151395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,266 DEBUG Processing 568/1135 atomic regions from SNP 170172 to 170772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,387 DEBUG Processing 604/1024 atomic regions from SNP 181073 to 181673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,402 DEBUG Processing 694/902 atomic regions from SNP 207930 to 208530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,445 DEBUG Processing 180/233 atomic regions from SNP 53924 to 54525 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:37,448 DEBUG Processing 712/859 atomic regions from SNP 213357 to 213957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,487 DEBUG Processing 504/649 atomic regions from SNP 151095 to 151695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,553 DEBUG Processing 569/1135 atomic regions from SNP 170472 to 171072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,651 DEBUG Processing 695/902 atomic regions from SNP 208230 to 208830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,657 DEBUG Processing 605/1024 atomic regions from SNP 181373 to 181973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,671 DEBUG Processing 181/233 atomic regions from SNP 54225 to 54826 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:37,695 DEBUG Processing 713/859 atomic regions from SNP 213657 to 214257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,728 DEBUG Processing 505/649 atomic regions from SNP 151395 to 151995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,839 DEBUG Processing 570/1135 atomic regions from SNP 170772 to 171372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,901 DEBUG Processing 182/233 atomic regions from SNP 54526 to 55127 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:37,907 DEBUG Processing 696/902 atomic regions from SNP 208530 to 209130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,930 DEBUG Processing 606/1024 atomic regions from SNP 181673 to 182273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,941 DEBUG Processing 714/859 atomic regions from SNP 213957 to 214557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,963 DEBUG Processing 506/649 atomic regions from SNP 151695 to 152295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,126 DEBUG Processing 571/1135 atomic regions from SNP 171072 to 171672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,136 DEBUG Processing 183/233 atomic regions from SNP 54827 to 55428 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:38,165 DEBUG Processing 697/902 atomic regions from SNP 208830 to 209430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,189 DEBUG Processing 715/859 atomic regions from SNP 214257 to 214857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,207 DEBUG Processing 607/1024 atomic regions from SNP 181973 to 182573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,208 DEBUG Processing 507/649 atomic regions from SNP 151995 to 152595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,370 DEBUG Processing 184/233 atomic regions from SNP 55128 to 55729 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:38,410 DEBUG Processing 572/1135 atomic regions from SNP 171372 to 171972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,426 DEBUG Processing 698/902 atomic regions from SNP 209130 to 209730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,441 DEBUG Processing 716/859 atomic regions from SNP 214557 to 215157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,470 DEBUG Processing 508/649 atomic regions from SNP 152295 to 152895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,488 DEBUG Processing 608/1024 atomic regions from SNP 182273 to 182873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,594 DEBUG Processing 185/233 atomic regions from SNP 55429 to 56030 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:38,683 DEBUG Processing 699/902 atomic regions from SNP 209430 to 210030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,695 DEBUG Processing 717/859 atomic regions from SNP 214857 to 215457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,696 DEBUG Processing 573/1135 atomic regions from SNP 171672 to 172272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,752 DEBUG Processing 509/649 atomic regions from SNP 152595 to 153195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,768 DEBUG Processing 609/1024 atomic regions from SNP 182573 to 183173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,814 DEBUG Processing 186/233 atomic regions from SNP 55730 to 56331 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:38,932 DEBUG Processing 700/902 atomic regions from SNP 209730 to 210330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,947 DEBUG Processing 718/859 atomic regions from SNP 215157 to 215757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,982 DEBUG Processing 574/1135 atomic regions from SNP 171972 to 172572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,031 DEBUG Processing 510/649 atomic regions from SNP 152895 to 153495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,048 DEBUG Processing 187/233 atomic regions from SNP 56031 to 56632 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:39,051 DEBUG Processing 610/1024 atomic regions from SNP 182873 to 183473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,169 DEBUG Processing 701/902 atomic regions from SNP 210030 to 210630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,189 DEBUG Processing 719/859 atomic regions from SNP 215457 to 216057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,268 DEBUG Processing 575/1135 atomic regions from SNP 172272 to 172872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,285 DEBUG Processing 188/233 atomic regions from SNP 56332 to 56933 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:39,314 DEBUG Processing 511/649 atomic regions from SNP 153195 to 153795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,333 DEBUG Processing 611/1024 atomic regions from SNP 183173 to 183773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,409 DEBUG Processing 702/902 atomic regions from SNP 210330 to 210930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,428 DEBUG Processing 720/859 atomic regions from SNP 215757 to 216357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,516 DEBUG Processing 189/233 atomic regions from SNP 56633 to 57234 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:39,555 DEBUG Processing 576/1135 atomic regions from SNP 172572 to 173172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,600 DEBUG Processing 512/649 atomic regions from SNP 153495 to 154095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,613 DEBUG Processing 612/1024 atomic regions from SNP 183473 to 184073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,665 DEBUG Processing 703/902 atomic regions from SNP 210630 to 211230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,675 DEBUG Processing 721/859 atomic regions from SNP 216057 to 216657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,754 DEBUG Processing 190/233 atomic regions from SNP 56934 to 57535 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:39,855 DEBUG Processing 577/1135 atomic regions from SNP 172872 to 173472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,900 DEBUG Processing 513/649 atomic regions from SNP 153795 to 154395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,911 DEBUG Processing 613/1024 atomic regions from SNP 183773 to 184373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,931 DEBUG Processing 704/902 atomic regions from SNP 210930 to 211530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,958 DEBUG Processing 722/859 atomic regions from SNP 216357 to 216957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,984 DEBUG Processing 191/233 atomic regions from SNP 57235 to 57836 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:40,134 DEBUG Processing 578/1135 atomic regions from SNP 173172 to 173772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,177 DEBUG Processing 514/649 atomic regions from SNP 154095 to 154695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,187 DEBUG Processing 614/1024 atomic regions from SNP 184073 to 184673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,191 DEBUG Processing 705/902 atomic regions from SNP 211230 to 211830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,223 DEBUG Processing 723/859 atomic regions from SNP 216657 to 217257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,236 DEBUG Processing 192/233 atomic regions from SNP 57536 to 58137 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:40,414 DEBUG Processing 579/1135 atomic regions from SNP 173472 to 174072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,449 DEBUG Processing 706/902 atomic regions from SNP 211530 to 212130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,449 DEBUG Processing 515/649 atomic regions from SNP 154395 to 154995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,470 DEBUG Processing 615/1024 atomic regions from SNP 184373 to 184973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,482 DEBUG Processing 724/859 atomic regions from SNP 216957 to 217557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,493 DEBUG Processing 193/233 atomic regions from SNP 57837 to 58438 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:40,697 DEBUG Processing 580/1135 atomic regions from SNP 173772 to 174372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,699 DEBUG Processing 707/902 atomic regions from SNP 211830 to 212430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,714 DEBUG Processing 516/649 atomic regions from SNP 154695 to 155295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,723 DEBUG Processing 194/233 atomic regions from SNP 58138 to 58739 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:40,732 DEBUG Processing 725/859 atomic regions from SNP 217257 to 217857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,747 DEBUG Processing 616/1024 atomic regions from SNP 184673 to 185273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,955 DEBUG Processing 195/233 atomic regions from SNP 58439 to 59040 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:40,957 DEBUG Processing 708/902 atomic regions from SNP 212130 to 212730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,983 DEBUG Processing 581/1135 atomic regions from SNP 174072 to 174672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,984 DEBUG Processing 517/649 atomic regions from SNP 154995 to 155595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,992 DEBUG Processing 726/859 atomic regions from SNP 217557 to 218157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,023 DEBUG Processing 617/1024 atomic regions from SNP 184973 to 185573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,184 DEBUG Processing 196/233 atomic regions from SNP 58740 to 59341 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:41,208 DEBUG Processing 709/902 atomic regions from SNP 212430 to 213030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,256 DEBUG Processing 518/649 atomic regions from SNP 155295 to 155895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,262 DEBUG Processing 582/1135 atomic regions from SNP 174372 to 174972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,271 DEBUG Processing 727/859 atomic regions from SNP 217857 to 218457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,300 DEBUG Processing 618/1024 atomic regions from SNP 185273 to 185873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,415 DEBUG Processing 197/233 atomic regions from SNP 59041 to 59642 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:41,461 DEBUG Processing 710/902 atomic regions from SNP 212730 to 213330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,536 DEBUG Processing 519/649 atomic regions from SNP 155595 to 156195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,543 DEBUG Processing 583/1135 atomic regions from SNP 174672 to 175272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,555 DEBUG Processing 728/859 atomic regions from SNP 218157 to 218757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,578 DEBUG Processing 619/1024 atomic regions from SNP 185573 to 186173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,646 DEBUG Processing 198/233 atomic regions from SNP 59342 to 59943 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:41,720 DEBUG Processing 711/902 atomic regions from SNP 213030 to 213630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,803 DEBUG Processing 520/649 atomic regions from SNP 155895 to 156495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,824 DEBUG Processing 584/1135 atomic regions from SNP 174972 to 175572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,835 DEBUG Processing 729/859 atomic regions from SNP 218457 to 219057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,852 DEBUG Processing 620/1024 atomic regions from SNP 185873 to 186473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,877 DEBUG Processing 199/233 atomic regions from SNP 59643 to 60244 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:41,979 DEBUG Processing 712/902 atomic regions from SNP 213330 to 213930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,076 DEBUG Processing 521/649 atomic regions from SNP 156195 to 156795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,106 DEBUG Processing 200/233 atomic regions from SNP 59944 to 60545 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:42,109 DEBUG Processing 585/1135 atomic regions from SNP 175272 to 175872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,110 DEBUG Processing 730/859 atomic regions from SNP 218757 to 219357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,137 DEBUG Processing 621/1024 atomic regions from SNP 186173 to 186773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,233 DEBUG Processing 713/902 atomic regions from SNP 213630 to 214230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,332 DEBUG Processing 201/233 atomic regions from SNP 60245 to 60846 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:42,351 DEBUG Processing 522/649 atomic regions from SNP 156495 to 157095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,358 DEBUG Processing 731/859 atomic regions from SNP 219057 to 219657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,394 DEBUG Processing 586/1135 atomic regions from SNP 175572 to 176172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,416 DEBUG Processing 622/1024 atomic regions from SNP 186473 to 187073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,504 DEBUG Processing 714/902 atomic regions from SNP 213930 to 214530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,562 DEBUG Processing 202/233 atomic regions from SNP 60546 to 61147 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:42,612 DEBUG Processing 732/859 atomic regions from SNP 219357 to 219957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,619 DEBUG Processing 523/649 atomic regions from SNP 156795 to 157395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,698 DEBUG Processing 587/1135 atomic regions from SNP 175872 to 176472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,707 DEBUG Processing 623/1024 atomic regions from SNP 186773 to 187373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,794 DEBUG Processing 715/902 atomic regions from SNP 214230 to 214830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,802 DEBUG Processing 203/233 atomic regions from SNP 60847 to 61448 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:42,866 DEBUG Processing 733/859 atomic regions from SNP 219657 to 220257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,899 DEBUG Processing 524/649 atomic regions from SNP 157095 to 157695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,995 DEBUG Processing 624/1024 atomic regions from SNP 187073 to 187673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,997 DEBUG Processing 588/1135 atomic regions from SNP 176172 to 176772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,030 DEBUG Processing 204/233 atomic regions from SNP 61148 to 61749 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:43,081 DEBUG Processing 716/902 atomic regions from SNP 214530 to 215130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,106 DEBUG Processing 734/859 atomic regions from SNP 219957 to 220557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,172 DEBUG Processing 525/649 atomic regions from SNP 157395 to 157995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,258 DEBUG Processing 205/233 atomic regions from SNP 61449 to 62050 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:43,276 DEBUG Processing 625/1024 atomic regions from SNP 187373 to 187973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,289 DEBUG Processing 589/1135 atomic regions from SNP 176472 to 177072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,352 DEBUG Processing 717/902 atomic regions from SNP 214830 to 215430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,353 DEBUG Processing 735/859 atomic regions from SNP 220257 to 220857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,450 DEBUG Processing 526/649 atomic regions from SNP 157695 to 158295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,489 DEBUG Processing 206/233 atomic regions from SNP 61750 to 62351 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:43,562 DEBUG Processing 626/1024 atomic regions from SNP 187673 to 188273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,579 DEBUG Processing 590/1135 atomic regions from SNP 176772 to 177372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,605 DEBUG Processing 736/859 atomic regions from SNP 220557 to 221157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,623 DEBUG Processing 718/902 atomic regions from SNP 215130 to 215730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,721 DEBUG Processing 207/233 atomic regions from SNP 62051 to 62652 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:43,727 DEBUG Processing 527/649 atomic regions from SNP 157995 to 158595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,843 DEBUG Processing 627/1024 atomic regions from SNP 187973 to 188573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,859 DEBUG Processing 737/859 atomic regions from SNP 220857 to 221457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,870 DEBUG Processing 591/1135 atomic regions from SNP 177072 to 177672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,875 DEBUG Processing 719/902 atomic regions from SNP 215430 to 216030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,954 DEBUG Processing 208/233 atomic regions from SNP 62352 to 62953 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:44,011 DEBUG Processing 528/649 atomic regions from SNP 158295 to 158895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,117 DEBUG Processing 720/902 atomic regions from SNP 215730 to 216330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,121 DEBUG Processing 738/859 atomic regions from SNP 221157 to 221757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,129 DEBUG Processing 628/1024 atomic regions from SNP 188273 to 188873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,166 DEBUG Processing 592/1135 atomic regions from SNP 177372 to 177972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,181 DEBUG Processing 209/233 atomic regions from SNP 62653 to 63254 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:44,288 DEBUG Processing 529/649 atomic regions from SNP 158595 to 159195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,360 DEBUG Processing 721/902 atomic regions from SNP 216030 to 216630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,379 DEBUG Processing 739/859 atomic regions from SNP 221457 to 222057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,409 DEBUG Processing 210/233 atomic regions from SNP 62954 to 63555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:44,416 DEBUG Processing 629/1024 atomic regions from SNP 188573 to 189173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,455 DEBUG Processing 593/1135 atomic regions from SNP 177672 to 178272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,543 DEBUG Processing 530/649 atomic regions from SNP 158895 to 159495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,607 DEBUG Processing 722/902 atomic regions from SNP 216330 to 216930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,632 DEBUG Processing 740/859 atomic regions from SNP 221757 to 222357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,635 DEBUG Processing 211/233 atomic regions from SNP 63255 to 63856 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:44,702 DEBUG Processing 630/1024 atomic regions from SNP 188873 to 189473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,747 DEBUG Processing 594/1135 atomic regions from SNP 177972 to 178572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,817 DEBUG Processing 531/649 atomic regions from SNP 159195 to 159795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,861 DEBUG Processing 723/902 atomic regions from SNP 216630 to 217230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,871 DEBUG Processing 212/233 atomic regions from SNP 63556 to 64157 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:44,881 DEBUG Processing 741/859 atomic regions from SNP 222057 to 222657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,984 DEBUG Processing 631/1024 atomic regions from SNP 189173 to 189773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,034 DEBUG Processing 595/1135 atomic regions from SNP 178272 to 178872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,095 DEBUG Processing 532/649 atomic regions from SNP 159495 to 160095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,119 DEBUG Processing 724/902 atomic regions from SNP 216930 to 217530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,121 DEBUG Processing 213/233 atomic regions from SNP 63857 to 64458 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:45,130 DEBUG Processing 742/859 atomic regions from SNP 222357 to 222957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,254 DEBUG Processing 632/1024 atomic regions from SNP 189473 to 190073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,317 DEBUG Processing 596/1135 atomic regions from SNP 178572 to 179172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,358 DEBUG Processing 214/233 atomic regions from SNP 64158 to 64759 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:45,369 DEBUG Processing 533/649 atomic regions from SNP 159795 to 160395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,377 DEBUG Processing 725/902 atomic regions from SNP 217230 to 217830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,386 DEBUG Processing 743/859 atomic regions from SNP 222657 to 223257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,517 DEBUG Processing 633/1024 atomic regions from SNP 189773 to 190373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,593 DEBUG Processing 215/233 atomic regions from SNP 64459 to 65060 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:45,598 DEBUG Processing 597/1135 atomic regions from SNP 178872 to 179472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,634 DEBUG Processing 534/649 atomic regions from SNP 160095 to 160695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,636 DEBUG Processing 726/902 atomic regions from SNP 217530 to 218130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,647 DEBUG Processing 744/859 atomic regions from SNP 222957 to 223557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,778 DEBUG Processing 634/1024 atomic regions from SNP 190073 to 190673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,817 DEBUG Processing 216/233 atomic regions from SNP 64760 to 65361 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:45,886 DEBUG Processing 598/1135 atomic regions from SNP 179172 to 179772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,886 DEBUG Processing 727/902 atomic regions from SNP 217830 to 218430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,904 DEBUG Processing 745/859 atomic regions from SNP 223257 to 223857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,914 DEBUG Processing 535/649 atomic regions from SNP 160395 to 160995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,035 DEBUG Processing 217/233 atomic regions from SNP 65061 to 65662 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:46,035 DEBUG Processing 635/1024 atomic regions from SNP 190373 to 190973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,151 DEBUG Processing 728/902 atomic regions from SNP 218130 to 218730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,159 DEBUG Processing 746/859 atomic regions from SNP 223557 to 224157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,175 DEBUG Processing 599/1135 atomic regions from SNP 179472 to 180072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,183 DEBUG Processing 536/649 atomic regions from SNP 160695 to 161295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,261 DEBUG Processing 218/233 atomic regions from SNP 65362 to 65963 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:46,298 DEBUG Processing 636/1024 atomic regions from SNP 190673 to 191273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,413 DEBUG Processing 747/859 atomic regions from SNP 223857 to 224457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,421 DEBUG Processing 729/902 atomic regions from SNP 218430 to 219030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,454 DEBUG Processing 537/649 atomic regions from SNP 160995 to 161595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,470 DEBUG Processing 600/1135 atomic regions from SNP 179772 to 180372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,487 DEBUG Processing 219/233 atomic regions from SNP 65663 to 66264 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:46,563 DEBUG Processing 637/1024 atomic regions from SNP 190973 to 191573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,663 DEBUG Processing 748/859 atomic regions from SNP 224157 to 224757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,699 DEBUG Processing 730/902 atomic regions from SNP 218730 to 219330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,717 DEBUG Processing 220/233 atomic regions from SNP 65964 to 66565 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:46,719 DEBUG Processing 538/649 atomic regions from SNP 161295 to 161895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,766 DEBUG Processing 601/1135 atomic regions from SNP 180072 to 180672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,831 DEBUG Processing 638/1024 atomic regions from SNP 191273 to 191873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,905 DEBUG Processing 749/859 atomic regions from SNP 224457 to 225057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,949 DEBUG Processing 221/233 atomic regions from SNP 66265 to 66866 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:46,967 DEBUG Processing 539/649 atomic regions from SNP 161595 to 162195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,971 DEBUG Processing 731/902 atomic regions from SNP 219030 to 219630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,055 DEBUG Processing 602/1135 atomic regions from SNP 180372 to 180972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,104 DEBUG Processing 639/1024 atomic regions from SNP 191573 to 192173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,152 DEBUG Processing 750/859 atomic regions from SNP 224757 to 225357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,171 DEBUG Processing 222/233 atomic regions from SNP 66566 to 67167 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:47,214 DEBUG Processing 540/649 atomic regions from SNP 161895 to 162495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,218 DEBUG Processing 732/902 atomic regions from SNP 219330 to 219930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,365 DEBUG Processing 603/1135 atomic regions from SNP 180672 to 181272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,383 DEBUG Processing 640/1024 atomic regions from SNP 191873 to 192473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,399 DEBUG Processing 223/233 atomic regions from SNP 66867 to 67468 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:47,406 DEBUG Processing 751/859 atomic regions from SNP 225057 to 225657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,458 DEBUG Processing 541/649 atomic regions from SNP 162195 to 162795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,463 DEBUG Processing 733/902 atomic regions from SNP 219630 to 220230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,630 DEBUG Processing 224/233 atomic regions from SNP 67168 to 67769 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:47,666 DEBUG Processing 752/859 atomic regions from SNP 225357 to 225957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,668 DEBUG Processing 641/1024 atomic regions from SNP 192173 to 192773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,678 DEBUG Processing 604/1135 atomic regions from SNP 180972 to 181572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,714 DEBUG Processing 734/902 atomic regions from SNP 219930 to 220530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,714 DEBUG Processing 542/649 atomic regions from SNP 162495 to 163095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,858 DEBUG Processing 225/233 atomic regions from SNP 67469 to 68070 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:47,927 DEBUG Processing 753/859 atomic regions from SNP 225657 to 226257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,957 DEBUG Processing 642/1024 atomic regions from SNP 192473 to 193073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,969 DEBUG Processing 543/649 atomic regions from SNP 162795 to 163395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,984 DEBUG Processing 735/902 atomic regions from SNP 220230 to 220830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,992 DEBUG Processing 605/1135 atomic regions from SNP 181272 to 181872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,089 DEBUG Processing 226/233 atomic regions from SNP 67770 to 68371 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:48,219 DEBUG Processing 754/859 atomic regions from SNP 225957 to 226557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,241 DEBUG Processing 544/649 atomic regions from SNP 163095 to 163695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,273 DEBUG Processing 736/902 atomic regions from SNP 220530 to 221130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,277 DEBUG Processing 643/1024 atomic regions from SNP 192773 to 193373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,295 DEBUG Processing 606/1135 atomic regions from SNP 181572 to 182172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,314 DEBUG Processing 227/233 atomic regions from SNP 68071 to 68672 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:48,501 DEBUG Processing 755/859 atomic regions from SNP 226257 to 226857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,506 DEBUG Processing 545/649 atomic regions from SNP 163395 to 163995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,532 DEBUG Processing 737/902 atomic regions from SNP 220830 to 221430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,551 DEBUG Processing 228/233 atomic regions from SNP 68372 to 68973 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:48,591 DEBUG Processing 644/1024 atomic regions from SNP 193073 to 193673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,597 DEBUG Processing 607/1135 atomic regions from SNP 181872 to 182472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,769 DEBUG Processing 546/649 atomic regions from SNP 163695 to 164295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,769 DEBUG Processing 756/859 atomic regions from SNP 226557 to 227157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,786 DEBUG Processing 229/233 atomic regions from SNP 68673 to 69274 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:48,790 DEBUG Processing 738/902 atomic regions from SNP 221130 to 221730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,873 DEBUG Processing 645/1024 atomic regions from SNP 193373 to 193973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,900 DEBUG Processing 608/1135 atomic regions from SNP 182172 to 182772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,016 DEBUG Processing 230/233 atomic regions from SNP 68974 to 69575 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:49,030 DEBUG Processing 547/649 atomic regions from SNP 163995 to 164595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,038 DEBUG Processing 739/902 atomic regions from SNP 221430 to 222030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,040 DEBUG Processing 757/859 atomic regions from SNP 226857 to 227457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,154 DEBUG Processing 646/1024 atomic regions from SNP 193673 to 194273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,185 DEBUG Processing 609/1135 atomic regions from SNP 182472 to 183072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,243 DEBUG Processing 231/233 atomic regions from SNP 69275 to 69876 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:49,286 DEBUG Processing 740/902 atomic regions from SNP 221730 to 222330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,298 DEBUG Processing 548/649 atomic regions from SNP 164295 to 164895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,300 DEBUG Processing 758/859 atomic regions from SNP 227157 to 227757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,427 DEBUG Processing 647/1024 atomic regions from SNP 193973 to 194573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,465 DEBUG Processing 610/1135 atomic regions from SNP 182772 to 183372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,473 DEBUG Processing 232/233 atomic regions from SNP 69576 to 70177 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:49,547 DEBUG Processing 549/649 atomic regions from SNP 164595 to 165195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,548 DEBUG Processing 741/902 atomic regions from SNP 222030 to 222630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,583 DEBUG Processing 759/859 atomic regions from SNP 227457 to 228057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,700 DEBUG Processing 648/1024 atomic regions from SNP 194273 to 194873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,707 DEBUG Processing 233/233 atomic regions from SNP 69877 to 70478 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:49,747 DEBUG Processing 611/1135 atomic regions from SNP 183072 to 183672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,811 DEBUG Processing 742/902 atomic regions from SNP 222330 to 222930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,815 DEBUG Processing 550/649 atomic regions from SNP 164895 to 165495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,829 DEBUG Unique SNPs positions in subchromosome 5: 70479 2025-01-31 09:46:49,871 DEBUG Processing 760/859 atomic regions from SNP 227757 to 228357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,962 DEBUG Subchromosome time: 63.01430427993182, subchromosome SNPs: 70479 2025-01-31 09:46:49,963 DEBUG Estimated BADs: [1.04, 7.29, 2.08, 1.04, 0.00, 0.00, 2.08, 1.04, 10.42, 1.04, 3.13, 1.04, 0.52, 2.08, 10.42, 1.04, 3.13, 1.04, 2.08, 9.38, 1.04, 0.35, 0.35, 1.04, 0.52, 2.08, 0.52, 1.04, 10.42] SNP counts: [3927, 709, 11760, 16528, 2, 56, 6109, 18862, 157, 35267, 4244, 2626, 23225, 705, 62, 3037, 1692, 7304, 7320, 280, 17224, 14645, 13005, 14533, 9325, 2322, 12300, 18959, 35] SNP IDs counts: [3927, 709, 11760, 16528, 2, 56, 6109, 18862, 157, 35267, 4244, 2626, 23225, 705, 62, 3037, 1692, 7304, 7320, 280, 17224, 14645, 13005, 14533, 9325, 2322, 12300, 18959, 35] Critical gap: 751390bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.56Mbp, 7.94Mbp, 14.83Mbp, 26.91Mbp[1.11Mbp], 28.03Mbp[1.53Mbp], 30.07Mbp[1.07Mbp], 39.28Mbp, 50.55Mbp, 50.64Mbp, 72.96Mbp, 75.77Mbp, 77.42Mbp, 91.31Mbp, 91.99Mbp, 92.04Mbp, 93.83Mbp, 94.86Mbp, 99.31Mbp, 103.48Mbp, 103.62Mbp, 114.15Mbp, 124.23Mbp[1.78Mbp], 134.02Mbp, 142.70Mbp, 150.43Mbp, 151.80Mbp, 159.25Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:46:49,963 DEBUG chrX time: 63.01488589600194 s 2025-01-31 09:46:49,973 DEBUG Processing 649/1024 atomic regions from SNP 194573 to 195173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,024 DEBUG Processing 612/1135 atomic regions from SNP 183372 to 183972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,060 DEBUG Processing 743/902 atomic regions from SNP 222630 to 223230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,082 DEBUG Processing 551/649 atomic regions from SNP 165195 to 165795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,123 DEBUG chrX: Fitting background model for 27 segments 2025-01-31 09:46:50,141 DEBUG Processing 761/859 atomic regions from SNP 228057 to 228657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,237 DEBUG Processing 650/1024 atomic regions from SNP 194873 to 195473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,295 DEBUG Processing 613/1135 atomic regions from SNP 183672 to 184272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,309 DEBUG Processing 744/902 atomic regions from SNP 222930 to 223530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,330 DEBUG Processing 552/649 atomic regions from SNP 165495 to 166095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,398 DEBUG Processing 762/859 atomic regions from SNP 228357 to 228957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,507 DEBUG Processing 651/1024 atomic regions from SNP 195173 to 195773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,556 DEBUG Processing 745/902 atomic regions from SNP 223230 to 223830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,574 DEBUG Processing 614/1135 atomic regions from SNP 183972 to 184572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,576 DEBUG Processing 553/649 atomic regions from SNP 165795 to 166395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,666 DEBUG Processing 763/859 atomic regions from SNP 228657 to 229257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,784 DEBUG Processing 652/1024 atomic regions from SNP 195473 to 196073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,802 DEBUG Processing 746/902 atomic regions from SNP 223530 to 224130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,833 DEBUG Processing 554/649 atomic regions from SNP 166095 to 166695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,850 DEBUG Processing 615/1135 atomic regions from SNP 184272 to 184872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,930 DEBUG Processing 764/859 atomic regions from SNP 228957 to 229557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,045 DEBUG Processing 747/902 atomic regions from SNP 223830 to 224430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,058 DEBUG Processing 653/1024 atomic regions from SNP 195773 to 196373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,087 DEBUG Processing 555/649 atomic regions from SNP 166395 to 166995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,128 DEBUG Processing 616/1135 atomic regions from SNP 184572 to 185172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,204 DEBUG Processing 765/859 atomic regions from SNP 229257 to 229857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,285 DEBUG Processing 748/902 atomic regions from SNP 224130 to 224730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,332 DEBUG Processing 654/1024 atomic regions from SNP 196073 to 196673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,349 DEBUG Processing 556/649 atomic regions from SNP 166695 to 167295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,409 DEBUG Processing 617/1135 atomic regions from SNP 184872 to 185472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,478 DEBUG Processing 766/859 atomic regions from SNP 229557 to 230157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,523 DEBUG Processing 749/902 atomic regions from SNP 224430 to 225030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,604 DEBUG Processing 655/1024 atomic regions from SNP 196373 to 196973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,605 DEBUG Processing 557/649 atomic regions from SNP 166995 to 167595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,692 DEBUG Processing 618/1135 atomic regions from SNP 185172 to 185772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,736 DEBUG Processing 767/859 atomic regions from SNP 229857 to 230457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,764 DEBUG Processing 750/902 atomic regions from SNP 224730 to 225330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,849 DEBUG Processing 558/649 atomic regions from SNP 167295 to 167895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,876 DEBUG Processing 656/1024 atomic regions from SNP 196673 to 197273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,974 DEBUG Processing 619/1135 atomic regions from SNP 185472 to 186072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,980 DEBUG Processing 768/859 atomic regions from SNP 230157 to 230757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,011 DEBUG Processing 751/902 atomic regions from SNP 225030 to 225630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,114 DEBUG Processing 559/649 atomic regions from SNP 167595 to 168195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,157 DEBUG Processing 657/1024 atomic regions from SNP 196973 to 197573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,236 DEBUG Processing 769/859 atomic regions from SNP 230457 to 231057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,267 DEBUG Processing 620/1135 atomic regions from SNP 185772 to 186372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,270 DEBUG Processing 752/902 atomic regions from SNP 225330 to 225930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,377 DEBUG Processing 560/649 atomic regions from SNP 167895 to 168495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,431 DEBUG Processing 658/1024 atomic regions from SNP 197273 to 197873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,479 DEBUG Processing 770/859 atomic regions from SNP 230757 to 231357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,517 DEBUG Processing 753/902 atomic regions from SNP 225630 to 226230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,546 DEBUG Processing 621/1135 atomic regions from SNP 186072 to 186672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,622 DEBUG Processing 561/649 atomic regions from SNP 168195 to 168795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,713 DEBUG Processing 659/1024 atomic regions from SNP 197573 to 198173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,750 DEBUG Processing 771/859 atomic regions from SNP 231057 to 231657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,767 DEBUG Processing 754/902 atomic regions from SNP 225930 to 226530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,825 DEBUG Processing 622/1135 atomic regions from SNP 186372 to 186972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,866 DEBUG Processing 562/649 atomic regions from SNP 168495 to 169095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,001 DEBUG Processing 660/1024 atomic regions from SNP 197873 to 198473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,019 DEBUG Processing 755/902 atomic regions from SNP 226230 to 226830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,038 DEBUG Processing 772/859 atomic regions from SNP 231357 to 231957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,108 DEBUG Processing 623/1135 atomic regions from SNP 186672 to 187272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,109 DEBUG Processing 563/649 atomic regions from SNP 168795 to 169395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,271 DEBUG Processing 756/902 atomic regions from SNP 226530 to 227130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,283 DEBUG Processing 661/1024 atomic regions from SNP 198173 to 198773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,325 DEBUG Processing 773/859 atomic regions from SNP 231657 to 232257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,354 DEBUG Processing 564/649 atomic regions from SNP 169095 to 169695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,390 DEBUG Processing 624/1135 atomic regions from SNP 186972 to 187572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,519 DEBUG Processing 757/902 atomic regions from SNP 226830 to 227430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,562 DEBUG Processing 662/1024 atomic regions from SNP 198473 to 199073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,608 DEBUG Processing 774/859 atomic regions from SNP 231957 to 232557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,615 DEBUG Processing 565/649 atomic regions from SNP 169395 to 169995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,672 DEBUG Processing 625/1135 atomic regions from SNP 187272 to 187872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,769 DEBUG Processing 758/902 atomic regions from SNP 227130 to 227730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,839 DEBUG Processing 663/1024 atomic regions from SNP 198773 to 199373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,892 DEBUG Processing 566/649 atomic regions from SNP 169695 to 170295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,899 DEBUG Processing 775/859 atomic regions from SNP 232257 to 232857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,954 DEBUG Processing 626/1135 atomic regions from SNP 187572 to 188172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,016 DEBUG Processing 759/902 atomic regions from SNP 227430 to 228030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,108 DEBUG Processing 664/1024 atomic regions from SNP 199073 to 199673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,162 DEBUG Processing 567/649 atomic regions from SNP 169995 to 170595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,183 DEBUG Processing 776/859 atomic regions from SNP 232557 to 233157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,234 DEBUG Processing 627/1135 atomic regions from SNP 187872 to 188472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,272 DEBUG Processing 760/902 atomic regions from SNP 227730 to 228330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,373 DEBUG Processing 665/1024 atomic regions from SNP 199373 to 199973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,437 DEBUG Processing 568/649 atomic regions from SNP 170295 to 170895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,443 DEBUG Processing 777/859 atomic regions from SNP 232857 to 233457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,520 DEBUG Processing 628/1135 atomic regions from SNP 188172 to 188772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,526 DEBUG Processing 761/902 atomic regions from SNP 228030 to 228630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,642 DEBUG Processing 666/1024 atomic regions from SNP 199673 to 200273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,697 DEBUG Processing 569/649 atomic regions from SNP 170595 to 171195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,712 DEBUG Processing 778/859 atomic regions from SNP 233157 to 233757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,797 DEBUG Processing 762/902 atomic regions from SNP 228330 to 228930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,806 DEBUG Processing 629/1135 atomic regions from SNP 188472 to 189072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,907 DEBUG Processing 667/1024 atomic regions from SNP 199973 to 200573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,953 DEBUG Processing 570/649 atomic regions from SNP 170895 to 171495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,974 DEBUG Processing 779/859 atomic regions from SNP 233457 to 234057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,078 DEBUG Processing 763/902 atomic regions from SNP 228630 to 229230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,090 DEBUG Processing 630/1135 atomic regions from SNP 188772 to 189372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,174 DEBUG Processing 668/1024 atomic regions from SNP 200273 to 200873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,217 DEBUG Processing 780/859 atomic regions from SNP 233757 to 234357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,225 DEBUG Processing 571/649 atomic regions from SNP 171195 to 171795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,349 DEBUG Processing 764/902 atomic regions from SNP 228930 to 229530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,372 DEBUG Processing 631/1135 atomic regions from SNP 189072 to 189672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,441 DEBUG Processing 669/1024 atomic regions from SNP 200573 to 201173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,459 DEBUG Processing 781/859 atomic regions from SNP 234057 to 234657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,488 DEBUG Processing 572/649 atomic regions from SNP 171495 to 172095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,602 DEBUG Processing 765/902 atomic regions from SNP 229230 to 229830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,650 DEBUG Processing 632/1135 atomic regions from SNP 189372 to 189972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,709 DEBUG Processing 782/859 atomic regions from SNP 234357 to 234957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,718 DEBUG Processing 670/1024 atomic regions from SNP 200873 to 201473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,756 DEBUG Processing 573/649 atomic regions from SNP 171795 to 172395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,869 DEBUG Processing 766/902 atomic regions from SNP 229530 to 230130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,924 DEBUG Processing 633/1135 atomic regions from SNP 189672 to 190272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,956 DEBUG Processing 783/859 atomic regions from SNP 234657 to 235257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,994 DEBUG Processing 671/1024 atomic regions from SNP 201173 to 201773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,002 DEBUG Processing 574/649 atomic regions from SNP 172095 to 172695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,111 DEBUG Processing 767/902 atomic regions from SNP 229830 to 230430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,195 DEBUG Processing 634/1135 atomic regions from SNP 189972 to 190572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,216 DEBUG Processing 784/859 atomic regions from SNP 234957 to 235557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,249 DEBUG Processing 575/649 atomic regions from SNP 172395 to 172995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,272 DEBUG Processing 672/1024 atomic regions from SNP 201473 to 202073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,358 DEBUG Processing 768/902 atomic regions from SNP 230130 to 230730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,471 DEBUG Processing 635/1135 atomic regions from SNP 190272 to 190872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,492 DEBUG Processing 785/859 atomic regions from SNP 235257 to 235857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,497 DEBUG Processing 576/649 atomic regions from SNP 172695 to 173295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,554 DEBUG Processing 673/1024 atomic regions from SNP 201773 to 202373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,608 DEBUG Processing 769/902 atomic regions from SNP 230430 to 231030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,753 DEBUG Processing 577/649 atomic regions from SNP 172995 to 173595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,754 DEBUG Processing 636/1135 atomic regions from SNP 190572 to 191172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,768 DEBUG Processing 786/859 atomic regions from SNP 235557 to 236157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,841 DEBUG Processing 674/1024 atomic regions from SNP 202073 to 202673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,855 DEBUG Processing 770/902 atomic regions from SNP 230730 to 231330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,001 DEBUG Processing 578/649 atomic regions from SNP 173295 to 173895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,025 DEBUG Processing 787/859 atomic regions from SNP 235857 to 236457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,030 DEBUG Processing 637/1135 atomic regions from SNP 190872 to 191472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,109 DEBUG Processing 771/902 atomic regions from SNP 231030 to 231630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,118 DEBUG Processing 675/1024 atomic regions from SNP 202373 to 202973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,253 DEBUG Processing 579/649 atomic regions from SNP 173595 to 174195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,309 DEBUG Processing 788/859 atomic regions from SNP 236157 to 236757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,316 DEBUG Processing 638/1135 atomic regions from SNP 191172 to 191772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,358 DEBUG Processing 772/902 atomic regions from SNP 231330 to 231930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,400 DEBUG Processing 676/1024 atomic regions from SNP 202673 to 203273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,497 DEBUG Processing 580/649 atomic regions from SNP 173895 to 174495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,579 DEBUG Processing 789/859 atomic regions from SNP 236457 to 237057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,598 DEBUG Processing 639/1135 atomic regions from SNP 191472 to 192072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,607 DEBUG Processing 773/902 atomic regions from SNP 231630 to 232230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,671 DEBUG Processing 677/1024 atomic regions from SNP 202973 to 203573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,742 DEBUG Processing 581/649 atomic regions from SNP 174195 to 174795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,836 DEBUG Processing 790/859 atomic regions from SNP 236757 to 237357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,856 DEBUG Processing 774/902 atomic regions from SNP 231930 to 232530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,878 DEBUG Processing 640/1135 atomic regions from SNP 191772 to 192372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,939 DEBUG Processing 678/1024 atomic regions from SNP 203273 to 203873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,985 DEBUG Processing 582/649 atomic regions from SNP 174495 to 175095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,091 DEBUG Processing 791/859 atomic regions from SNP 237057 to 237657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,104 DEBUG Processing 775/902 atomic regions from SNP 232230 to 232830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,156 DEBUG Processing 641/1135 atomic regions from SNP 192072 to 192672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,203 DEBUG Processing 679/1024 atomic regions from SNP 203573 to 204173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,224 DEBUG Processing 583/649 atomic regions from SNP 174795 to 175395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,355 DEBUG Processing 776/902 atomic regions from SNP 232530 to 233130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,359 DEBUG Processing 792/859 atomic regions from SNP 237357 to 237957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,433 DEBUG Processing 642/1135 atomic regions from SNP 192372 to 192972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,462 DEBUG Processing 584/649 atomic regions from SNP 175095 to 175695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,470 DEBUG Processing 680/1024 atomic regions from SNP 203873 to 204473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,609 DEBUG Processing 777/902 atomic regions from SNP 232830 to 233430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,631 DEBUG Processing 793/859 atomic regions from SNP 237657 to 238257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,698 DEBUG Processing 585/649 atomic regions from SNP 175395 to 175995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,708 DEBUG Processing 643/1135 atomic regions from SNP 192672 to 193272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,739 DEBUG Processing 681/1024 atomic regions from SNP 204173 to 204773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,865 DEBUG Processing 778/902 atomic regions from SNP 233130 to 233730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,902 DEBUG Processing 794/859 atomic regions from SNP 237957 to 238557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,939 DEBUG Processing 586/649 atomic regions from SNP 175695 to 176295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,981 DEBUG Processing 644/1135 atomic regions from SNP 192972 to 193572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,042 DEBUG Processing 682/1024 atomic regions from SNP 204473 to 205073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,128 DEBUG Processing 779/902 atomic regions from SNP 233430 to 234030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,151 DEBUG Processing 795/859 atomic regions from SNP 238257 to 238857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,187 DEBUG Processing 587/649 atomic regions from SNP 175995 to 176595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,252 DEBUG Processing 645/1135 atomic regions from SNP 193272 to 193872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,354 DEBUG Processing 683/1024 atomic regions from SNP 204773 to 205373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,389 DEBUG Processing 780/902 atomic regions from SNP 233730 to 234330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,400 DEBUG Processing 796/859 atomic regions from SNP 238557 to 239157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,438 DEBUG Processing 588/649 atomic regions from SNP 176295 to 176895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,521 DEBUG Processing 646/1135 atomic regions from SNP 193572 to 194172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,654 DEBUG Processing 797/859 atomic regions from SNP 238857 to 239457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,660 DEBUG Processing 781/902 atomic regions from SNP 234030 to 234630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,676 DEBUG Processing 684/1024 atomic regions from SNP 205073 to 205673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,697 DEBUG Processing 589/649 atomic regions from SNP 176595 to 177195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,800 DEBUG Processing 647/1135 atomic regions from SNP 193872 to 194472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,906 DEBUG Processing 798/859 atomic regions from SNP 239157 to 239757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,924 DEBUG Processing 782/902 atomic regions from SNP 234330 to 234930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,972 DEBUG Processing 590/649 atomic regions from SNP 176895 to 177495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,984 DEBUG Processing 685/1024 atomic regions from SNP 205373 to 205973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,073 DEBUG Processing 648/1135 atomic regions from SNP 194172 to 194772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,150 DEBUG Processing 799/859 atomic regions from SNP 239457 to 240057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,181 DEBUG Processing 783/902 atomic regions from SNP 234630 to 235230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,228 DEBUG Processing 591/649 atomic regions from SNP 177195 to 177795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,296 DEBUG Processing 686/1024 atomic regions from SNP 205673 to 206273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,350 DEBUG Processing 649/1135 atomic regions from SNP 194472 to 195072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,391 DEBUG Processing 800/859 atomic regions from SNP 239757 to 240357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,437 DEBUG Processing 784/902 atomic regions from SNP 234930 to 235530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,479 DEBUG Processing 592/649 atomic regions from SNP 177495 to 178095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,586 DEBUG Processing 687/1024 atomic regions from SNP 205973 to 206573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,630 DEBUG Processing 650/1135 atomic regions from SNP 194772 to 195372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,633 DEBUG Processing 801/859 atomic regions from SNP 240057 to 240657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,697 DEBUG Processing 785/902 atomic regions from SNP 235230 to 235830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,725 DEBUG Processing 593/649 atomic regions from SNP 177795 to 178395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,889 DEBUG Processing 802/859 atomic regions from SNP 240357 to 240957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,891 DEBUG Processing 688/1024 atomic regions from SNP 206273 to 206873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,921 DEBUG Processing 651/1135 atomic regions from SNP 195072 to 195672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,961 DEBUG Processing 786/902 atomic regions from SNP 235530 to 236130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,979 DEBUG Processing 594/649 atomic regions from SNP 178095 to 178695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,137 DEBUG Processing 803/859 atomic regions from SNP 240657 to 241257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,193 DEBUG Processing 689/1024 atomic regions from SNP 206573 to 207173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,204 DEBUG Processing 652/1135 atomic regions from SNP 195372 to 195972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,223 DEBUG Processing 787/902 atomic regions from SNP 235830 to 236430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,230 DEBUG Processing 595/649 atomic regions from SNP 178395 to 178995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,386 DEBUG Processing 804/859 atomic regions from SNP 240957 to 241557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,474 DEBUG Processing 690/1024 atomic regions from SNP 206873 to 207473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,477 DEBUG Processing 596/649 atomic regions from SNP 178695 to 179295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,480 DEBUG Processing 788/902 atomic regions from SNP 236130 to 236730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,482 DEBUG Processing 653/1135 atomic regions from SNP 195672 to 196272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,650 DEBUG Processing 805/859 atomic regions from SNP 241257 to 241857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,719 DEBUG Processing 597/649 atomic regions from SNP 178995 to 179595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,729 DEBUG Processing 789/902 atomic regions from SNP 236430 to 237030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,755 DEBUG Processing 654/1135 atomic regions from SNP 195972 to 196572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,765 DEBUG Processing 691/1024 atomic regions from SNP 207173 to 207773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,917 DEBUG Processing 806/859 atomic regions from SNP 241557 to 242157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,977 DEBUG Processing 790/902 atomic regions from SNP 236730 to 237330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,979 DEBUG Processing 598/649 atomic regions from SNP 179295 to 179895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,027 DEBUG Processing 655/1135 atomic regions from SNP 196272 to 196872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,037 DEBUG Processing 692/1024 atomic regions from SNP 207473 to 208073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,190 DEBUG Processing 807/859 atomic regions from SNP 241857 to 242457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,226 DEBUG Processing 791/902 atomic regions from SNP 237030 to 237630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,256 DEBUG Processing 599/649 atomic regions from SNP 179595 to 180195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,306 DEBUG Processing 656/1135 atomic regions from SNP 196572 to 197172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,311 DEBUG Processing 693/1024 atomic regions from SNP 207773 to 208373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,471 DEBUG Processing 808/859 atomic regions from SNP 242157 to 242757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,484 DEBUG Processing 792/902 atomic regions from SNP 237330 to 237930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,527 DEBUG Processing 600/649 atomic regions from SNP 179895 to 180495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,589 DEBUG Processing 657/1135 atomic regions from SNP 196872 to 197472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,608 DEBUG Processing 694/1024 atomic regions from SNP 208073 to 208673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,721 DEBUG Processing 809/859 atomic regions from SNP 242457 to 243057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,739 DEBUG Processing 793/902 atomic regions from SNP 237630 to 238230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,803 DEBUG Processing 601/649 atomic regions from SNP 180195 to 180795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,872 DEBUG Processing 658/1135 atomic regions from SNP 197172 to 197772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,895 DEBUG Processing 695/1024 atomic regions from SNP 208373 to 208973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,976 DEBUG Processing 810/859 atomic regions from SNP 242757 to 243357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,988 DEBUG Processing 794/902 atomic regions from SNP 237930 to 238530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,080 DEBUG Processing 602/649 atomic regions from SNP 180495 to 181095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,157 DEBUG Processing 659/1135 atomic regions from SNP 197472 to 198072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,176 DEBUG Processing 696/1024 atomic regions from SNP 208673 to 209273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,234 DEBUG Processing 795/902 atomic regions from SNP 238230 to 238830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,246 DEBUG Processing 811/859 atomic regions from SNP 243057 to 243657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,364 DEBUG Processing 603/649 atomic regions from SNP 180795 to 181395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,439 DEBUG Processing 660/1135 atomic regions from SNP 197772 to 198372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,464 DEBUG Processing 697/1024 atomic regions from SNP 208973 to 209573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,479 DEBUG Processing 796/902 atomic regions from SNP 238530 to 239130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,523 DEBUG Processing 812/859 atomic regions from SNP 243357 to 243957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,645 DEBUG Processing 604/649 atomic regions from SNP 181095 to 181695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,720 DEBUG Processing 661/1135 atomic regions from SNP 198072 to 198672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,725 DEBUG Processing 797/902 atomic regions from SNP 238830 to 239430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,750 DEBUG Processing 698/1024 atomic regions from SNP 209273 to 209873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,799 DEBUG Processing 813/859 atomic regions from SNP 243657 to 244257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,920 DEBUG Processing 605/649 atomic regions from SNP 181395 to 181995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,977 DEBUG Processing 798/902 atomic regions from SNP 239130 to 239730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,002 DEBUG Processing 662/1135 atomic regions from SNP 198372 to 198972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,050 DEBUG Processing 699/1024 atomic regions from SNP 209573 to 210173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,079 DEBUG Processing 814/859 atomic regions from SNP 243957 to 244557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,188 DEBUG Processing 606/649 atomic regions from SNP 181695 to 182295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,237 DEBUG Processing 799/902 atomic regions from SNP 239430 to 240030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,285 DEBUG Processing 663/1135 atomic regions from SNP 198672 to 199272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,344 DEBUG Processing 815/859 atomic regions from SNP 244257 to 244857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,349 DEBUG Processing 700/1024 atomic regions from SNP 209873 to 210473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,442 DEBUG Processing 607/649 atomic regions from SNP 181995 to 182595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,490 DEBUG Processing 800/902 atomic regions from SNP 239730 to 240330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,568 DEBUG Processing 664/1135 atomic regions from SNP 198972 to 199572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,618 DEBUG Processing 816/859 atomic regions from SNP 244557 to 245157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,629 DEBUG Processing 701/1024 atomic regions from SNP 210173 to 210773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,704 DEBUG Processing 608/649 atomic regions from SNP 182295 to 182895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,748 DEBUG Processing 801/902 atomic regions from SNP 240030 to 240630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,843 DEBUG Processing 665/1135 atomic regions from SNP 199272 to 199872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,872 DEBUG Processing 817/859 atomic regions from SNP 244857 to 245457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,908 DEBUG Processing 702/1024 atomic regions from SNP 210473 to 211073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,965 DEBUG Processing 609/649 atomic regions from SNP 182595 to 183195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,999 DEBUG Processing 802/902 atomic regions from SNP 240330 to 240930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,112 DEBUG Processing 818/859 atomic regions from SNP 245157 to 245757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,116 DEBUG Processing 666/1135 atomic regions from SNP 199572 to 200172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,184 DEBUG Processing 703/1024 atomic regions from SNP 210773 to 211373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,221 DEBUG Processing 610/649 atomic regions from SNP 182895 to 183495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,243 DEBUG Processing 803/902 atomic regions from SNP 240630 to 241230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,343 DEBUG Processing 819/859 atomic regions from SNP 245457 to 246057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,386 DEBUG Processing 667/1135 atomic regions from SNP 199872 to 200472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,478 DEBUG Processing 704/1024 atomic regions from SNP 211073 to 211673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,490 DEBUG Processing 611/649 atomic regions from SNP 183195 to 183795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,492 DEBUG Processing 804/902 atomic regions from SNP 240930 to 241530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,587 DEBUG Processing 820/859 atomic regions from SNP 245757 to 246357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,652 DEBUG Processing 668/1135 atomic regions from SNP 200172 to 200772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,747 DEBUG Processing 805/902 atomic regions from SNP 241230 to 241830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,774 DEBUG Processing 612/649 atomic regions from SNP 183495 to 184095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,783 DEBUG Processing 705/1024 atomic regions from SNP 211373 to 211973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,848 DEBUG Processing 821/859 atomic regions from SNP 246057 to 246657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,915 DEBUG Processing 669/1135 atomic regions from SNP 200472 to 201072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,002 DEBUG Processing 806/902 atomic regions from SNP 241530 to 242130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,053 DEBUG Processing 613/649 atomic regions from SNP 183795 to 184395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,061 DEBUG Processing 706/1024 atomic regions from SNP 211673 to 212273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,125 DEBUG Processing 822/859 atomic regions from SNP 246357 to 246957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,189 DEBUG Processing 670/1135 atomic regions from SNP 200772 to 201372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,259 DEBUG Processing 807/902 atomic regions from SNP 241830 to 242430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,319 DEBUG Processing 614/649 atomic regions from SNP 184095 to 184695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,328 DEBUG Processing 707/1024 atomic regions from SNP 211973 to 212573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,367 DEBUG Processing 823/859 atomic regions from SNP 246657 to 247257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,459 DEBUG Processing 671/1135 atomic regions from SNP 201072 to 201672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,510 DEBUG Processing 808/902 atomic regions from SNP 242130 to 242730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,584 DEBUG Processing 615/649 atomic regions from SNP 184395 to 184995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,599 DEBUG Processing 708/1024 atomic regions from SNP 212273 to 212873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,612 DEBUG Processing 824/859 atomic regions from SNP 246957 to 247557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,749 DEBUG Processing 672/1135 atomic regions from SNP 201372 to 201972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,761 DEBUG Processing 809/902 atomic regions from SNP 242430 to 243030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,833 DEBUG Processing 616/649 atomic regions from SNP 184695 to 185295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,857 DEBUG Processing 825/859 atomic regions from SNP 247257 to 247857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,866 DEBUG Processing 709/1024 atomic regions from SNP 212573 to 213173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,008 DEBUG Processing 810/902 atomic regions from SNP 242730 to 243330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,054 DEBUG Processing 673/1135 atomic regions from SNP 201672 to 202272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,094 DEBUG Processing 617/649 atomic regions from SNP 184995 to 185595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,097 DEBUG Processing 826/859 atomic regions from SNP 247557 to 248157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,135 DEBUG Processing 710/1024 atomic regions from SNP 212873 to 213473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,255 DEBUG Processing 811/902 atomic regions from SNP 243030 to 243630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,347 DEBUG Processing 674/1135 atomic regions from SNP 201972 to 202572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,366 DEBUG Processing 618/649 atomic regions from SNP 185295 to 185895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,371 DEBUG Processing 827/859 atomic regions from SNP 247857 to 248457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,410 DEBUG Processing 711/1024 atomic regions from SNP 213173 to 213773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,514 DEBUG Processing 812/902 atomic regions from SNP 243330 to 243930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,613 DEBUG Processing 619/649 atomic regions from SNP 185595 to 186195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,623 DEBUG Processing 828/859 atomic regions from SNP 248157 to 248757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,629 DEBUG Processing 675/1135 atomic regions from SNP 202272 to 202872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,691 DEBUG Processing 712/1024 atomic regions from SNP 213473 to 214073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,775 DEBUG Processing 813/902 atomic regions from SNP 243630 to 244230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,853 DEBUG Processing 620/649 atomic regions from SNP 185895 to 186495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,857 DEBUG Processing 829/859 atomic regions from SNP 248457 to 249057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,900 DEBUG Processing 676/1135 atomic regions from SNP 202572 to 203172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,953 DEBUG Processing 713/1024 atomic regions from SNP 213773 to 214373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,035 DEBUG Processing 814/902 atomic regions from SNP 243930 to 244530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,094 DEBUG Processing 621/649 atomic regions from SNP 186195 to 186795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,105 DEBUG Processing 830/859 atomic regions from SNP 248757 to 249357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,173 DEBUG Processing 677/1135 atomic regions from SNP 202872 to 203472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,219 DEBUG Processing 714/1024 atomic regions from SNP 214073 to 214673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,290 DEBUG Processing 815/902 atomic regions from SNP 244230 to 244830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,341 DEBUG Processing 622/649 atomic regions from SNP 186495 to 187095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,362 DEBUG Processing 831/859 atomic regions from SNP 249057 to 249657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,451 DEBUG Processing 678/1135 atomic regions from SNP 203172 to 203772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,479 DEBUG Processing 715/1024 atomic regions from SNP 214373 to 214973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,548 DEBUG Processing 816/902 atomic regions from SNP 244530 to 245130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,606 DEBUG Processing 832/859 atomic regions from SNP 249357 to 249957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,615 DEBUG Processing 623/649 atomic regions from SNP 186795 to 187395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,739 DEBUG Processing 679/1135 atomic regions from SNP 203472 to 204072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,747 DEBUG Processing 716/1024 atomic regions from SNP 214673 to 215273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,808 DEBUG Processing 817/902 atomic regions from SNP 244830 to 245430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,843 DEBUG Processing 833/859 atomic regions from SNP 249657 to 250257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,888 DEBUG Processing 624/649 atomic regions from SNP 187095 to 187695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,013 DEBUG Processing 717/1024 atomic regions from SNP 214973 to 215573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,049 DEBUG Processing 680/1135 atomic regions from SNP 203772 to 204372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,067 DEBUG Processing 818/902 atomic regions from SNP 245130 to 245730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,081 DEBUG Processing 834/859 atomic regions from SNP 249957 to 250557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,155 DEBUG Processing 625/649 atomic regions from SNP 187395 to 187995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,289 DEBUG Processing 718/1024 atomic regions from SNP 215273 to 215873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,325 DEBUG Processing 835/859 atomic regions from SNP 250257 to 250857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,331 DEBUG Processing 819/902 atomic regions from SNP 245430 to 246030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,342 DEBUG Processing 681/1135 atomic regions from SNP 204072 to 204672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,430 DEBUG Processing 626/649 atomic regions from SNP 187695 to 188295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,557 DEBUG Processing 719/1024 atomic regions from SNP 215573 to 216173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,567 DEBUG Processing 836/859 atomic regions from SNP 250557 to 251157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,594 DEBUG Processing 820/902 atomic regions from SNP 245730 to 246330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,633 DEBUG Processing 682/1135 atomic regions from SNP 204372 to 204972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,677 DEBUG Processing 627/649 atomic regions from SNP 187995 to 188595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,824 DEBUG Processing 837/859 atomic regions from SNP 250857 to 251457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,832 DEBUG Processing 720/1024 atomic regions from SNP 215873 to 216473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,862 DEBUG Processing 821/902 atomic regions from SNP 246030 to 246630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,925 DEBUG Processing 628/649 atomic regions from SNP 188295 to 188895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,936 DEBUG Processing 683/1135 atomic regions from SNP 204672 to 205272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,071 DEBUG Processing 838/859 atomic regions from SNP 251157 to 251757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,109 DEBUG Processing 721/1024 atomic regions from SNP 216173 to 216773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,124 DEBUG Processing 822/902 atomic regions from SNP 246330 to 246930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,172 DEBUG Processing 629/649 atomic regions from SNP 188595 to 189195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,235 DEBUG Processing 684/1135 atomic regions from SNP 204972 to 205572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,311 DEBUG Processing 839/859 atomic regions from SNP 251457 to 252057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,383 DEBUG Processing 722/1024 atomic regions from SNP 216473 to 217073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,389 DEBUG Processing 823/902 atomic regions from SNP 246630 to 247230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,418 DEBUG Processing 630/649 atomic regions from SNP 188895 to 189495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,531 DEBUG Processing 685/1135 atomic regions from SNP 205272 to 205872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,549 DEBUG Processing 840/859 atomic regions from SNP 251757 to 252357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,653 DEBUG Processing 723/1024 atomic regions from SNP 216773 to 217373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,656 DEBUG Processing 824/902 atomic regions from SNP 246930 to 247530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,667 DEBUG Processing 631/649 atomic regions from SNP 189195 to 189795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,795 DEBUG Processing 841/859 atomic regions from SNP 252057 to 252657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,805 DEBUG Processing 686/1135 atomic regions from SNP 205572 to 206172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,929 DEBUG Processing 632/649 atomic regions from SNP 189495 to 190095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,933 DEBUG Processing 825/902 atomic regions from SNP 247230 to 247830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,938 DEBUG Processing 724/1024 atomic regions from SNP 217073 to 217673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,038 DEBUG Processing 842/859 atomic regions from SNP 252357 to 252957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,081 DEBUG Processing 687/1135 atomic regions from SNP 205872 to 206472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,189 DEBUG Processing 633/649 atomic regions from SNP 189795 to 190395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,197 DEBUG Processing 826/902 atomic regions from SNP 247530 to 248130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,227 DEBUG Processing 725/1024 atomic regions from SNP 217373 to 217973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,294 DEBUG Processing 843/859 atomic regions from SNP 252657 to 253257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,362 DEBUG Processing 688/1135 atomic regions from SNP 206172 to 206772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,441 DEBUG Processing 634/649 atomic regions from SNP 190095 to 190695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,459 DEBUG Processing 827/902 atomic regions from SNP 247830 to 248430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,501 DEBUG Processing 726/1024 atomic regions from SNP 217673 to 218273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,563 DEBUG Processing 844/859 atomic regions from SNP 252957 to 253557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,633 DEBUG Processing 689/1135 atomic regions from SNP 206472 to 207072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,687 DEBUG Processing 635/649 atomic regions from SNP 190395 to 190995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,721 DEBUG Processing 828/902 atomic regions from SNP 248130 to 248730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,776 DEBUG Processing 727/1024 atomic regions from SNP 217973 to 218573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,839 DEBUG Processing 845/859 atomic regions from SNP 253257 to 253857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,906 DEBUG Processing 690/1135 atomic regions from SNP 206772 to 207372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,951 DEBUG Processing 636/649 atomic regions from SNP 190695 to 191295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,982 DEBUG Processing 829/902 atomic regions from SNP 248430 to 249030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,055 DEBUG Processing 728/1024 atomic regions from SNP 218273 to 218873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,095 DEBUG Processing 846/859 atomic regions from SNP 253557 to 254157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,176 DEBUG Processing 691/1135 atomic regions from SNP 207072 to 207672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,227 DEBUG Processing 637/649 atomic regions from SNP 190995 to 191595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,244 DEBUG Processing 830/902 atomic regions from SNP 248730 to 249330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,337 DEBUG Processing 729/1024 atomic regions from SNP 218573 to 219173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,347 DEBUG Processing 847/859 atomic regions from SNP 253857 to 254457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,453 DEBUG Processing 692/1135 atomic regions from SNP 207372 to 207972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,499 DEBUG Processing 638/649 atomic regions from SNP 191295 to 191895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,509 DEBUG Processing 831/902 atomic regions from SNP 249030 to 249630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,618 DEBUG Processing 730/1024 atomic regions from SNP 218873 to 219473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,623 DEBUG Processing 848/859 atomic regions from SNP 254157 to 254757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,733 DEBUG Processing 693/1135 atomic regions from SNP 207672 to 208272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,752 DEBUG Processing 639/649 atomic regions from SNP 191595 to 192195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,772 DEBUG Processing 832/902 atomic regions from SNP 249330 to 249930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,895 DEBUG Processing 849/859 atomic regions from SNP 254457 to 255057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,903 DEBUG Processing 731/1024 atomic regions from SNP 219173 to 219773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,017 DEBUG Processing 640/649 atomic regions from SNP 191895 to 192495 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,017 DEBUG Processing 694/1135 atomic regions from SNP 207972 to 208572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,031 DEBUG Processing 833/902 atomic regions from SNP 249630 to 250230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,143 DEBUG Processing 850/859 atomic regions from SNP 254757 to 255357 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,184 DEBUG Processing 732/1024 atomic regions from SNP 219473 to 220073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,272 DEBUG Processing 641/649 atomic regions from SNP 192195 to 192795 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,287 DEBUG Processing 834/902 atomic regions from SNP 249930 to 250530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,306 DEBUG Processing 695/1135 atomic regions from SNP 208272 to 208872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,389 DEBUG Processing 851/859 atomic regions from SNP 255057 to 255657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,477 DEBUG Processing 733/1024 atomic regions from SNP 219773 to 220373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,551 DEBUG Processing 835/902 atomic regions from SNP 250230 to 250830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,557 DEBUG Processing 642/649 atomic regions from SNP 192495 to 193095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,595 DEBUG Processing 696/1135 atomic regions from SNP 208572 to 209172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,629 DEBUG Processing 852/859 atomic regions from SNP 255357 to 255957 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,776 DEBUG Processing 734/1024 atomic regions from SNP 220073 to 220673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,814 DEBUG Processing 836/902 atomic regions from SNP 250530 to 251130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,845 DEBUG Processing 643/649 atomic regions from SNP 192795 to 193395 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,881 DEBUG Processing 853/859 atomic regions from SNP 255657 to 256257 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,884 DEBUG Processing 697/1135 atomic regions from SNP 208872 to 209472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,076 DEBUG Processing 735/1024 atomic regions from SNP 220373 to 220973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,079 DEBUG Processing 837/902 atomic regions from SNP 250830 to 251430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,122 DEBUG Processing 644/649 atomic regions from SNP 193095 to 193695 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,132 DEBUG Processing 854/859 atomic regions from SNP 255957 to 256557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,167 DEBUG Processing 698/1135 atomic regions from SNP 209172 to 209772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,342 DEBUG Processing 838/902 atomic regions from SNP 251130 to 251730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,379 DEBUG Processing 736/1024 atomic regions from SNP 220673 to 221273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,386 DEBUG Processing 645/649 atomic regions from SNP 193395 to 193995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,388 DEBUG Processing 855/859 atomic regions from SNP 256257 to 256857 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,448 DEBUG Processing 699/1135 atomic regions from SNP 209472 to 210072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,600 DEBUG Processing 839/902 atomic regions from SNP 251430 to 252030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,642 DEBUG Processing 856/859 atomic regions from SNP 256557 to 257157 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,666 DEBUG Processing 646/649 atomic regions from SNP 193695 to 194295 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,672 DEBUG Processing 737/1024 atomic regions from SNP 220973 to 221573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,732 DEBUG Processing 700/1135 atomic regions from SNP 209772 to 210372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,855 DEBUG Processing 840/902 atomic regions from SNP 251730 to 252330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,894 DEBUG Processing 857/859 atomic regions from SNP 256857 to 257457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,951 DEBUG Processing 738/1024 atomic regions from SNP 221273 to 221873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,953 DEBUG Processing 647/649 atomic regions from SNP 193995 to 194595 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,013 DEBUG Processing 701/1135 atomic regions from SNP 210072 to 210672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,099 DEBUG Processing 841/902 atomic regions from SNP 252030 to 252630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,147 DEBUG Processing 858/859 atomic regions from SNP 257157 to 257757 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,230 DEBUG Processing 739/1024 atomic regions from SNP 221573 to 222173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,242 DEBUG Processing 648/649 atomic regions from SNP 194295 to 194895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,287 DEBUG Processing 702/1135 atomic regions from SNP 210372 to 210972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,339 DEBUG Processing 842/902 atomic regions from SNP 252330 to 252930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,413 DEBUG Processing 859/859 atomic regions from SNP 257457 to 258057 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,522 DEBUG Processing 740/1024 atomic regions from SNP 221873 to 222473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,524 DEBUG Processing 649/649 atomic regions from SNP 194595 to 195195 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,556 DEBUG Unique SNPs positions in subchromosome 1: 258058 2025-01-31 09:47:15,565 DEBUG Processing 703/1135 atomic regions from SNP 210672 to 211272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,588 DEBUG Processing 843/902 atomic regions from SNP 252630 to 253230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,696 DEBUG Unique SNPs positions in subchromosome 2: 195196 2025-01-31 09:47:15,806 DEBUG Processing 741/1024 atomic regions from SNP 222173 to 222773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,846 DEBUG Processing 844/902 atomic regions from SNP 252930 to 253530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,847 DEBUG Processing 704/1135 atomic regions from SNP 210972 to 211572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,083 DEBUG Processing 742/1024 atomic regions from SNP 222473 to 223073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,097 DEBUG Processing 845/902 atomic regions from SNP 253230 to 253830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,129 DEBUG Processing 705/1135 atomic regions from SNP 211272 to 211872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,345 DEBUG Processing 846/902 atomic regions from SNP 253530 to 254130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,351 DEBUG Processing 743/1024 atomic regions from SNP 222773 to 223373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,409 DEBUG Processing 706/1135 atomic regions from SNP 211572 to 212172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,584 DEBUG Processing 847/902 atomic regions from SNP 253830 to 254430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,619 DEBUG Processing 744/1024 atomic regions from SNP 223073 to 223673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,689 DEBUG Processing 707/1135 atomic regions from SNP 211872 to 212472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,825 DEBUG Processing 848/902 atomic regions from SNP 254130 to 254730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,903 DEBUG Processing 745/1024 atomic regions from SNP 223373 to 223973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,970 DEBUG Processing 708/1135 atomic regions from SNP 212172 to 212772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,072 DEBUG Processing 849/902 atomic regions from SNP 254430 to 255030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,191 DEBUG Processing 746/1024 atomic regions from SNP 223673 to 224273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,261 DEBUG Processing 709/1135 atomic regions from SNP 212472 to 213072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,334 DEBUG Processing 850/902 atomic regions from SNP 254730 to 255330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,491 DEBUG Processing 747/1024 atomic regions from SNP 223973 to 224573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,546 DEBUG Processing 710/1135 atomic regions from SNP 212772 to 213372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,595 DEBUG Processing 851/902 atomic regions from SNP 255030 to 255630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,777 DEBUG Processing 748/1024 atomic regions from SNP 224273 to 224873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,832 DEBUG Processing 711/1135 atomic regions from SNP 213072 to 213672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,856 DEBUG Processing 852/902 atomic regions from SNP 255330 to 255930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,047 DEBUG Processing 749/1024 atomic regions from SNP 224573 to 225173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,114 DEBUG Processing 712/1135 atomic regions from SNP 213372 to 213972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,116 DEBUG Processing 853/902 atomic regions from SNP 255630 to 256230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,307 DEBUG Processing 750/1024 atomic regions from SNP 224873 to 225473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,374 DEBUG Processing 854/902 atomic regions from SNP 255930 to 256530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,400 DEBUG Processing 713/1135 atomic regions from SNP 213672 to 214272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,566 DEBUG Processing 751/1024 atomic regions from SNP 225173 to 225773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,620 DEBUG Processing 855/902 atomic regions from SNP 256230 to 256830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,687 DEBUG Processing 714/1135 atomic regions from SNP 213972 to 214572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,824 DEBUG Processing 752/1024 atomic regions from SNP 225473 to 226073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,864 DEBUG Processing 856/902 atomic regions from SNP 256530 to 257130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,984 DEBUG Processing 715/1135 atomic regions from SNP 214272 to 214872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,099 DEBUG Processing 753/1024 atomic regions from SNP 225773 to 226373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,101 DEBUG Processing 857/902 atomic regions from SNP 256830 to 257430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,277 DEBUG Processing 716/1135 atomic regions from SNP 214572 to 215172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,349 DEBUG Processing 858/902 atomic regions from SNP 257130 to 257730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,383 DEBUG Processing 754/1024 atomic regions from SNP 226073 to 226673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,552 DEBUG Processing 717/1135 atomic regions from SNP 214872 to 215472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,606 DEBUG Processing 859/902 atomic regions from SNP 257430 to 258030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,674 DEBUG Processing 755/1024 atomic regions from SNP 226373 to 226973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,832 DEBUG Processing 718/1135 atomic regions from SNP 215172 to 215772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,862 DEBUG Processing 860/902 atomic regions from SNP 257730 to 258330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,984 DEBUG Processing 756/1024 atomic regions from SNP 226673 to 227273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,118 DEBUG Processing 861/902 atomic regions from SNP 258030 to 258630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,128 DEBUG Processing 719/1135 atomic regions from SNP 215472 to 216072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,259 DEBUG Processing 757/1024 atomic regions from SNP 226973 to 227573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,365 DEBUG Processing 862/902 atomic regions from SNP 258330 to 258930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,408 DEBUG Processing 720/1135 atomic regions from SNP 215772 to 216372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,563 DEBUG Processing 758/1024 atomic regions from SNP 227273 to 227873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,606 DEBUG Processing 863/902 atomic regions from SNP 258630 to 259230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,639 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:47:20,689 DEBUG Processing 721/1135 atomic regions from SNP 216072 to 216672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,845 DEBUG Processing 864/902 atomic regions from SNP 258930 to 259530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,872 DEBUG Processing 759/1024 atomic regions from SNP 227573 to 228173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,970 DEBUG Processing 722/1135 atomic regions from SNP 216372 to 216972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,087 DEBUG Processing 865/902 atomic regions from SNP 259230 to 259830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,145 DEBUG Processing 760/1024 atomic regions from SNP 227873 to 228473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,245 DEBUG Processing 723/1135 atomic regions from SNP 216672 to 217272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,330 DEBUG Processing 866/902 atomic regions from SNP 259530 to 260130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,428 DEBUG Processing 761/1024 atomic regions from SNP 228173 to 228773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,517 DEBUG Processing 724/1135 atomic regions from SNP 216972 to 217572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,574 DEBUG Processing 867/902 atomic regions from SNP 259830 to 260430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,701 DEBUG Processing 762/1024 atomic regions from SNP 228473 to 229073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,791 DEBUG Processing 725/1135 atomic regions from SNP 217272 to 217872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,810 DEBUG Processing 868/902 atomic regions from SNP 260130 to 260730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,982 DEBUG Processing 763/1024 atomic regions from SNP 228773 to 229373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,049 DEBUG Processing 869/902 atomic regions from SNP 260430 to 261030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,064 DEBUG Processing 726/1135 atomic regions from SNP 217572 to 218172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,258 DEBUG Processing 764/1024 atomic regions from SNP 229073 to 229673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,287 DEBUG Processing 870/902 atomic regions from SNP 260730 to 261330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,344 DEBUG Processing 727/1135 atomic regions from SNP 217872 to 218472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,531 DEBUG Processing 871/902 atomic regions from SNP 261030 to 261630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,538 DEBUG Processing 765/1024 atomic regions from SNP 229373 to 229973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,635 DEBUG Processing 728/1135 atomic regions from SNP 218172 to 218772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,780 DEBUG Processing 872/902 atomic regions from SNP 261330 to 261930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,824 DEBUG Processing 766/1024 atomic regions from SNP 229673 to 230273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,922 DEBUG Processing 729/1135 atomic regions from SNP 218472 to 219072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,025 DEBUG Processing 873/902 atomic regions from SNP 261630 to 262230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,099 DEBUG Processing 767/1024 atomic regions from SNP 229973 to 230573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,217 DEBUG Processing 730/1135 atomic regions from SNP 218772 to 219372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,269 DEBUG Processing 874/902 atomic regions from SNP 261930 to 262530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,385 DEBUG Processing 768/1024 atomic regions from SNP 230273 to 230873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,505 DEBUG Processing 731/1135 atomic regions from SNP 219072 to 219672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,512 DEBUG Processing 875/902 atomic regions from SNP 262230 to 262830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,656 DEBUG Processing 769/1024 atomic regions from SNP 230573 to 231173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,746 DEBUG Processing 876/902 atomic regions from SNP 262530 to 263130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,804 DEBUG Processing 732/1135 atomic regions from SNP 219372 to 219972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,935 DEBUG Processing 770/1024 atomic regions from SNP 230873 to 231473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,985 DEBUG Processing 877/902 atomic regions from SNP 262830 to 263430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,106 DEBUG Processing 733/1135 atomic regions from SNP 219672 to 220272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,219 DEBUG Processing 771/1024 atomic regions from SNP 231173 to 231773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,227 DEBUG Processing 878/902 atomic regions from SNP 263130 to 263730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,416 DEBUG Processing 734/1135 atomic regions from SNP 219972 to 220572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,477 DEBUG Processing 879/902 atomic regions from SNP 263430 to 264030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,500 DEBUG Processing 772/1024 atomic regions from SNP 231473 to 232073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,690 DEBUG Processing 735/1135 atomic regions from SNP 220272 to 220872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,723 DEBUG Processing 880/902 atomic regions from SNP 263730 to 264330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,778 DEBUG Processing 773/1024 atomic regions from SNP 231773 to 232373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,965 DEBUG Processing 736/1135 atomic regions from SNP 220572 to 221172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,968 DEBUG Processing 881/902 atomic regions from SNP 264030 to 264630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,052 DEBUG Processing 774/1024 atomic regions from SNP 232073 to 232673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,210 DEBUG Processing 882/902 atomic regions from SNP 264330 to 264930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,243 DEBUG Processing 737/1135 atomic regions from SNP 220872 to 221472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,324 DEBUG Processing 775/1024 atomic regions from SNP 232373 to 232973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,446 DEBUG Processing 883/902 atomic regions from SNP 264630 to 265230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,520 DEBUG Processing 738/1135 atomic regions from SNP 221172 to 221772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,594 DEBUG Processing 776/1024 atomic regions from SNP 232673 to 233273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,678 DEBUG Processing 884/902 atomic regions from SNP 264930 to 265530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,793 DEBUG Processing 739/1135 atomic regions from SNP 221472 to 222072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,866 DEBUG Processing 777/1024 atomic regions from SNP 232973 to 233573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,913 DEBUG Processing 885/902 atomic regions from SNP 265230 to 265830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,066 DEBUG Processing 740/1135 atomic regions from SNP 221772 to 222372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,142 DEBUG Processing 778/1024 atomic regions from SNP 233273 to 233873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,163 DEBUG Processing 886/902 atomic regions from SNP 265530 to 266130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,336 DEBUG Processing 741/1135 atomic regions from SNP 222072 to 222672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,412 DEBUG Processing 887/902 atomic regions from SNP 265830 to 266430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,418 DEBUG Processing 779/1024 atomic regions from SNP 233573 to 234173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,613 DEBUG Processing 742/1135 atomic regions from SNP 222372 to 222972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,665 DEBUG Processing 888/902 atomic regions from SNP 266130 to 266730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,697 DEBUG Processing 780/1024 atomic regions from SNP 233873 to 234473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,901 DEBUG Processing 743/1135 atomic regions from SNP 222672 to 223272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,919 DEBUG Processing 889/902 atomic regions from SNP 266430 to 267030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,986 DEBUG Processing 781/1024 atomic regions from SNP 234173 to 234773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,167 DEBUG Processing 890/902 atomic regions from SNP 266730 to 267330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,182 DEBUG Processing 744/1135 atomic regions from SNP 222972 to 223572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,271 DEBUG Processing 782/1024 atomic regions from SNP 234473 to 235073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,413 DEBUG Processing 891/902 atomic regions from SNP 267030 to 267630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,463 DEBUG Processing 745/1135 atomic regions from SNP 223272 to 223872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,573 DEBUG Processing 783/1024 atomic regions from SNP 234773 to 235373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,661 DEBUG Processing 892/902 atomic regions from SNP 267330 to 267930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,741 DEBUG Processing 746/1135 atomic regions from SNP 223572 to 224172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,856 DEBUG Processing 784/1024 atomic regions from SNP 235073 to 235673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,903 DEBUG Processing 893/902 atomic regions from SNP 267630 to 268230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,035 DEBUG Processing 747/1135 atomic regions from SNP 223872 to 224472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,136 DEBUG Processing 785/1024 atomic regions from SNP 235373 to 235973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,144 DEBUG Processing 894/902 atomic regions from SNP 267930 to 268530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,343 DEBUG Processing 748/1135 atomic regions from SNP 224172 to 224772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,383 DEBUG Processing 895/902 atomic regions from SNP 268230 to 268830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,412 DEBUG Processing 786/1024 atomic regions from SNP 235673 to 236273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,623 DEBUG Processing 896/902 atomic regions from SNP 268530 to 269130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,640 DEBUG Processing 749/1135 atomic regions from SNP 224472 to 225072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,692 DEBUG Processing 787/1024 atomic regions from SNP 235973 to 236573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,863 DEBUG Processing 897/902 atomic regions from SNP 268830 to 269430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,960 DEBUG Processing 750/1135 atomic regions from SNP 224772 to 225372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,970 DEBUG Subchromosome time: 198.5014911260223, subchromosome SNPs: 195196 2025-01-31 09:47:28,970 DEBUG Estimated BADs: [1.56, 0.52, 1.56, 0.52, 3.13, 9.38, 3.13, 0.52, 1.56, 0.39, 0.78, 1.56, 0.31, 0.78, 1.56, 3.13, 0.78, 0.17, 0.78, 3.13, 6.25, 3.13, 6.25, 1.56, 3.13, 6.25] SNP counts: [22338, 27593, 4194, 8848, 3058, 512, 10545, 6798, 18652, 26773, 10322, 5283, 5395, 14747, 9937, 6647, 2765, 2787, 2040, 29221, 8712, 8425, 2031, 7489, 14773, 1342] SNP IDs counts: [22338, 27593, 4194, 8848, 3058, 512, 10545, 6798, 18652, 26773, 10322, 5283, 5395, 14747, 9937, 6647, 2765, 2787, 2040, 29221, 8712, 8425, 2031, 7489, 14773, 1342] Critical gap: 685304bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 16.24Mbp, 32.60Mbp, 34.88Mbp, 40.13Mbp, 41.86Mbp[0.85Mbp], 43.06Mbp, 48.69Mbp, 52.74Mbp, 64.73Mbp, 80.74Mbp, 86.56Mbp, 89.60Mbp, 92.91Mbp, 101.23Mbp, 106.69Mbp, 110.29Mbp, 111.91Mbp, 113.85Mbp, 115.03Mbp, 131.71Mbp, 136.28Mbp, 140.68Mbp, 141.75Mbp, 147.85Mbp, 155.56Mbp, 156.51Mbp] 2025-01-31 09:47:28,971 DEBUG chr4 time: 198.50211698398925 s 2025-01-31 09:47:28,980 DEBUG Processing 788/1024 atomic regions from SNP 236273 to 236873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,109 DEBUG Processing 898/902 atomic regions from SNP 269130 to 269730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,116 DEBUG chr4: Fitting background model for 26 segments 2025-01-31 09:47:29,268 DEBUG Processing 789/1024 atomic regions from SNP 236573 to 237173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,273 DEBUG Processing 751/1135 atomic regions from SNP 225072 to 225672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,362 DEBUG Processing 899/902 atomic regions from SNP 269430 to 270030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,553 DEBUG Processing 790/1024 atomic regions from SNP 236873 to 237473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,587 DEBUG Processing 752/1135 atomic regions from SNP 225372 to 225972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,621 DEBUG Processing 900/902 atomic regions from SNP 269730 to 270330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,835 DEBUG Processing 791/1024 atomic regions from SNP 237173 to 237773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,879 DEBUG Processing 901/902 atomic regions from SNP 270030 to 270630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,906 DEBUG Processing 753/1135 atomic regions from SNP 225672 to 226272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,125 DEBUG Processing 792/1024 atomic regions from SNP 237473 to 238073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,143 DEBUG Processing 902/902 atomic regions from SNP 270330 to 270930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,228 DEBUG Processing 754/1135 atomic regions from SNP 225972 to 226572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,283 DEBUG Unique SNPs positions in subchromosome 1: 270931 2025-01-31 09:47:30,403 DEBUG Processing 793/1024 atomic regions from SNP 237773 to 238373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,552 DEBUG Processing 755/1135 atomic regions from SNP 226272 to 226872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,675 DEBUG Processing 794/1024 atomic regions from SNP 238073 to 238673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,874 DEBUG Processing 756/1135 atomic regions from SNP 226572 to 227172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,947 DEBUG Processing 795/1024 atomic regions from SNP 238373 to 238973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,195 DEBUG Processing 757/1135 atomic regions from SNP 226872 to 227472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,230 DEBUG Processing 796/1024 atomic regions from SNP 238673 to 239273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,511 DEBUG Processing 797/1024 atomic regions from SNP 238973 to 239573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,529 DEBUG Processing 758/1135 atomic regions from SNP 227172 to 227772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,795 DEBUG Processing 798/1024 atomic regions from SNP 239273 to 239873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,842 DEBUG Processing 759/1135 atomic regions from SNP 227472 to 228072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,089 DEBUG Processing 799/1024 atomic regions from SNP 239573 to 240173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,154 DEBUG Processing 760/1135 atomic regions from SNP 227772 to 228372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,372 DEBUG Processing 800/1024 atomic regions from SNP 239873 to 240473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,462 DEBUG Processing 761/1135 atomic regions from SNP 228072 to 228672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,651 DEBUG Processing 801/1024 atomic regions from SNP 240173 to 240773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,787 DEBUG Processing 762/1135 atomic regions from SNP 228372 to 228972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,931 DEBUG Processing 802/1024 atomic regions from SNP 240473 to 241073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,106 DEBUG Processing 763/1135 atomic regions from SNP 228672 to 229272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,211 DEBUG Processing 803/1024 atomic regions from SNP 240773 to 241373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,401 DEBUG Processing 764/1135 atomic regions from SNP 228972 to 229572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,494 DEBUG Processing 804/1024 atomic regions from SNP 241073 to 241673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,687 DEBUG Processing 765/1135 atomic regions from SNP 229272 to 229872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,777 DEBUG Processing 805/1024 atomic regions from SNP 241373 to 241973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,994 DEBUG Processing 766/1135 atomic regions from SNP 229572 to 230172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,054 DEBUG Processing 806/1024 atomic regions from SNP 241673 to 242273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,324 DEBUG Processing 767/1135 atomic regions from SNP 229872 to 230472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,337 DEBUG Processing 807/1024 atomic regions from SNP 241973 to 242573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,624 DEBUG Processing 808/1024 atomic regions from SNP 242273 to 242873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,654 DEBUG Processing 768/1135 atomic regions from SNP 230172 to 230772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,901 DEBUG Processing 809/1024 atomic regions from SNP 242573 to 243173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,976 DEBUG Processing 769/1135 atomic regions from SNP 230472 to 231072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,175 DEBUG Processing 810/1024 atomic regions from SNP 242873 to 243473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,295 DEBUG Processing 770/1135 atomic regions from SNP 230772 to 231372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,452 DEBUG Processing 811/1024 atomic regions from SNP 243173 to 243773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,616 DEBUG Processing 771/1135 atomic regions from SNP 231072 to 231672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,721 DEBUG Processing 812/1024 atomic regions from SNP 243473 to 244073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,926 DEBUG Processing 772/1135 atomic regions from SNP 231372 to 231972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,994 DEBUG Processing 813/1024 atomic regions from SNP 243773 to 244373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,222 DEBUG Processing 773/1135 atomic regions from SNP 231672 to 232272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,262 DEBUG Processing 814/1024 atomic regions from SNP 244073 to 244673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,499 DEBUG Processing 774/1135 atomic regions from SNP 231972 to 232572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,531 DEBUG Processing 815/1024 atomic regions from SNP 244373 to 244973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,663 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:47:36,665 DEBUG chr6: Signal quantile: 0.992. signal threshold: 12. Best RMSEA: 0.020 2025-01-31 09:47:36,795 DEBUG Processing 775/1135 atomic regions from SNP 232272 to 232872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,796 DEBUG Processing 816/1024 atomic regions from SNP 244673 to 245273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,064 DEBUG Processing 817/1024 atomic regions from SNP 244973 to 245573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,097 DEBUG Processing 776/1135 atomic regions from SNP 232572 to 233172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,334 DEBUG Processing 818/1024 atomic regions from SNP 245273 to 245873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,379 DEBUG Processing 777/1135 atomic regions from SNP 232872 to 233472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,605 DEBUG Processing 819/1024 atomic regions from SNP 245573 to 246173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,662 DEBUG Processing 778/1135 atomic regions from SNP 233172 to 233772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,878 DEBUG Processing 820/1024 atomic regions from SNP 245873 to 246473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,974 DEBUG Processing 779/1135 atomic regions from SNP 233472 to 234072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,153 DEBUG Processing 821/1024 atomic regions from SNP 246173 to 246773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,293 DEBUG Processing 780/1135 atomic regions from SNP 233772 to 234372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,431 DEBUG Processing 822/1024 atomic regions from SNP 246473 to 247073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,604 DEBUG Processing 781/1135 atomic regions from SNP 234072 to 234672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,708 DEBUG Processing 823/1024 atomic regions from SNP 246773 to 247373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,911 DEBUG Processing 782/1135 atomic regions from SNP 234372 to 234972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,984 DEBUG Processing 824/1024 atomic regions from SNP 247073 to 247673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,077 DEBUG Subchromosome time: 271.63271944900043, subchromosome SNPs: 258058 2025-01-31 09:47:39,077 DEBUG Estimated BADs: [1.49, 0.50, 1.49, 7.46, 1.49, 7.46, 2.98, 0.75, 1.49, 0.30, 1.49, 0.37, 1.49, 0.37, 1.49, 5.97, 0.75, 2.98, 0.75, 2.98, 5.97, 1.49, 4.47, 1.49, 7.46, 1.49, 4.47, 2.98] SNP counts: [4919, 22792, 6116, 1120, 9761, 1382, 13434, 21632, 6586, 14715, 9275, 5416, 11405, 17076, 24016, 798, 2212, 6584, 1595, 6893, 3688, 8411, 10030, 7907, 494, 7640, 7541, 24620] SNP IDs counts: [4919, 22792, 6116, 1120, 9761, 1382, 13434, 21632, 6586, 14715, 9275, 5416, 11405, 17076, 24016, 798, 2212, 6584, 1595, 6893, 3688, 8411, 10030, 7907, 494, 7640, 7541, 24620] Critical gap: 672632bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.92Mbp, 20.87Mbp, 24.32Mbp, 24.91Mbp, 30.52Mbp, 31.24Mbp, 38.48Mbp, 50.93Mbp, 54.49Mbp, 63.38Mbp, 68.45Mbp, 71.70Mbp, 77.92Mbp, 88.07Mbp, 103.65Mbp, 104.07Mbp, 105.49Mbp, 109.06Mbp, 110.09Mbp, 113.72Mbp, 115.66Mbp, 120.08Mbp, 125.45Mbp, 129.72Mbp, 130.04Mbp, 134.14Mbp, 138.26Mbp, 151.83Mbp] 2025-01-31 09:47:39,077 DEBUG chr5 time: 271.6333340689307 s 2025-01-31 09:47:39,217 DEBUG Processing 783/1135 atomic regions from SNP 234672 to 235272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,226 DEBUG chr5: Fitting background model for 28 segments 2025-01-31 09:47:39,260 DEBUG Processing 825/1024 atomic regions from SNP 247373 to 247973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,398 DEBUG chr6 total SNP count: 257634 2025-01-31 09:47:39,398 DEBUG chr6 length: 149736546 2025-01-31 09:47:39,398 DEBUG ----------------------------------------- 2025-01-31 09:47:39,398 INFO Processing SNPs in chr6 2025-01-31 09:47:39,529 DEBUG Processing 784/1135 atomic regions from SNP 234972 to 235572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,541 DEBUG Processing 826/1024 atomic regions from SNP 247673 to 248273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,652 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 257634)] 2025-01-31 09:47:39,822 DEBUG Processing 785/1135 atomic regions from SNP 235272 to 235872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,823 DEBUG Processing 827/1024 atomic regions from SNP 247973 to 248573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,827 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:40,109 DEBUG Processing 828/1024 atomic regions from SNP 248273 to 248873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,117 DEBUG Processing 786/1135 atomic regions from SNP 235572 to 236172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,399 DEBUG Processing 829/1024 atomic regions from SNP 248573 to 249173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,414 DEBUG Processing 787/1135 atomic regions from SNP 235872 to 236472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,687 DEBUG Processing 830/1024 atomic regions from SNP 248873 to 249473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,712 DEBUG Processing 788/1135 atomic regions from SNP 236172 to 236772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,979 DEBUG Processing 831/1024 atomic regions from SNP 249173 to 249773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,009 DEBUG Processing 789/1135 atomic regions from SNP 236472 to 237072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,262 DEBUG Processing 832/1024 atomic regions from SNP 249473 to 250073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,300 DEBUG Processing 790/1135 atomic regions from SNP 236772 to 237372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,544 DEBUG Processing 833/1024 atomic regions from SNP 249773 to 250373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,586 DEBUG Processing 791/1135 atomic regions from SNP 237072 to 237672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,824 DEBUG Processing 834/1024 atomic regions from SNP 250073 to 250673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,875 DEBUG Processing 792/1135 atomic regions from SNP 237372 to 237972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,132 DEBUG Processing 835/1024 atomic regions from SNP 250373 to 250973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,159 DEBUG Processing 793/1135 atomic regions from SNP 237672 to 238272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,427 DEBUG Processing 836/1024 atomic regions from SNP 250673 to 251273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,444 DEBUG Processing 794/1135 atomic regions from SNP 237972 to 238572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,708 DEBUG Processing 837/1024 atomic regions from SNP 250973 to 251573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,727 DEBUG Processing 795/1135 atomic regions from SNP 238272 to 238872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,994 DEBUG Processing 838/1024 atomic regions from SNP 251273 to 251873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,011 DEBUG Processing 796/1135 atomic regions from SNP 238572 to 239172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,298 DEBUG Processing 839/1024 atomic regions from SNP 251573 to 252173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,302 DEBUG Processing 797/1135 atomic regions from SNP 238872 to 239472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,584 DEBUG Processing 840/1024 atomic regions from SNP 251873 to 252473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,595 DEBUG Processing 798/1135 atomic regions from SNP 239172 to 239772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,871 DEBUG Processing 841/1024 atomic regions from SNP 252173 to 252773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,898 DEBUG Processing 799/1135 atomic regions from SNP 239472 to 240072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,155 DEBUG Processing 842/1024 atomic regions from SNP 252473 to 253073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,188 DEBUG Processing 800/1135 atomic regions from SNP 239772 to 240372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,437 DEBUG Processing 843/1024 atomic regions from SNP 252773 to 253373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,476 DEBUG Processing 801/1135 atomic regions from SNP 240072 to 240672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,729 DEBUG Processing 844/1024 atomic regions from SNP 253073 to 253673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,771 DEBUG Processing 802/1135 atomic regions from SNP 240372 to 240972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,013 DEBUG Processing 845/1024 atomic regions from SNP 253373 to 253973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,069 DEBUG Processing 803/1135 atomic regions from SNP 240672 to 241272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,296 DEBUG Processing 846/1024 atomic regions from SNP 253673 to 254273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,365 DEBUG Processing 804/1135 atomic regions from SNP 240972 to 241572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,579 DEBUG Processing 847/1024 atomic regions from SNP 253973 to 254573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,675 DEBUG Processing 805/1135 atomic regions from SNP 241272 to 241872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,855 DEBUG Processing 848/1024 atomic regions from SNP 254273 to 254873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,967 DEBUG Processing 806/1135 atomic regions from SNP 241572 to 242172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,135 DEBUG Processing 849/1024 atomic regions from SNP 254573 to 255173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,261 DEBUG Processing 807/1135 atomic regions from SNP 241872 to 242472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,303 DEBUG Subchromosome time: 278.2742766609881, subchromosome SNPs: 270931 2025-01-31 09:47:46,303 DEBUG Estimated BADs: [0.82, 3.27, 0.82, 3.27, 0.82, 6.54, 0.82, 4.91, 1.64, 0.41, 3.27, 9.81, 1.64, 0.82, 11.45, 0.82, 3.27, 9.81, 1.64, 11.45, 3.27, 4.91, 1.64, 6.54, 1.64, 4.91, 1.64, 3.27, 1.64, 6.54, 1.64, 0.20, 0.82, 0.23, 0.82, 0.18] SNP counts: [9781, 2341, 14417, 1507, 14896, 230, 3019, 1032, 12908, 16744, 3642, 911, 34778, 13556, 126, 7715, 6997, 4923, 6002, 4202, 6301, 15629, 12576, 603, 8085, 3380, 7645, 6479, 7946, 1063, 5917, 4175, 9587, 7514, 11709, 2595] SNP IDs counts: [9781, 2341, 14417, 1507, 14896, 230, 3019, 1032, 12908, 16744, 3642, 911, 34778, 13556, 126, 7715, 6997, 4923, 6002, 4202, 6301, 15629, 12576, 603, 8085, 3380, 7645, 6479, 7946, 1063, 5917, 4175, 9587, 7514, 11709, 2595] Critical gap: 692719bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.89Mbp, 10.19Mbp, 19.15Mbp, 19.99Mbp, 28.70Mbp, 28.81Mbp, 30.55Mbp, 31.09Mbp, 38.36Mbp, 49.02Mbp, 51.15Mbp, 51.64Mbp, 71.57Mbp, 79.56Mbp, 79.63Mbp, 83.98Mbp, 87.73Mbp, 90.37Mbp, 94.38Mbp, 96.73Mbp, 100.41Mbp, 108.83Mbp, 116.32Mbp, 116.63Mbp, 121.15Mbp, 122.92Mbp, 127.18Mbp, 130.68Mbp, 135.24Mbp, 135.81Mbp, 139.11Mbp, 141.84Mbp, 147.14Mbp, 151.57Mbp, 158.20Mbp, 160.04Mbp] 2025-01-31 09:47:46,303 DEBUG chr3 time: 278.2749007939128 s 2025-01-31 09:47:46,421 DEBUG Processing 850/1024 atomic regions from SNP 254873 to 255473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,468 DEBUG chr3: Fitting background model for 36 segments 2025-01-31 09:47:46,559 DEBUG Processing 808/1135 atomic regions from SNP 242172 to 242772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,702 DEBUG Processing 851/1024 atomic regions from SNP 255173 to 255773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,850 DEBUG Processing 809/1135 atomic regions from SNP 242472 to 243072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,984 DEBUG Processing 852/1024 atomic regions from SNP 255473 to 256073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,133 DEBUG Processing 810/1135 atomic regions from SNP 242772 to 243372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,265 DEBUG Processing 853/1024 atomic regions from SNP 255773 to 256373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,419 DEBUG Processing 811/1135 atomic regions from SNP 243072 to 243672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,572 DEBUG Processing 854/1024 atomic regions from SNP 256073 to 256673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,693 DEBUG Processing 812/1135 atomic regions from SNP 243372 to 243972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,858 DEBUG Processing 855/1024 atomic regions from SNP 256373 to 256973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,970 DEBUG Processing 813/1135 atomic regions from SNP 243672 to 244272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,153 DEBUG Processing 856/1024 atomic regions from SNP 256673 to 257273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,253 DEBUG Processing 814/1135 atomic regions from SNP 243972 to 244572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,442 DEBUG Processing 857/1024 atomic regions from SNP 256973 to 257573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,539 DEBUG Processing 815/1135 atomic regions from SNP 244272 to 244872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,727 DEBUG Processing 858/1024 atomic regions from SNP 257273 to 257873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,829 DEBUG Processing 816/1135 atomic regions from SNP 244572 to 245172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,024 DEBUG Processing 859/1024 atomic regions from SNP 257573 to 258173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,129 DEBUG Processing 817/1135 atomic regions from SNP 244872 to 245472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,335 DEBUG Processing 860/1024 atomic regions from SNP 257873 to 258473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,439 DEBUG Processing 818/1135 atomic regions from SNP 245172 to 245772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,624 DEBUG Processing 861/1024 atomic regions from SNP 258173 to 258773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,726 DEBUG Processing 819/1135 atomic regions from SNP 245472 to 246072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,917 DEBUG Processing 862/1024 atomic regions from SNP 258473 to 259073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,023 DEBUG Processing 820/1135 atomic regions from SNP 245772 to 246372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,202 DEBUG Processing 863/1024 atomic regions from SNP 258773 to 259373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,315 DEBUG Processing 821/1135 atomic regions from SNP 246072 to 246672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,494 DEBUG Processing 864/1024 atomic regions from SNP 259073 to 259673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,625 DEBUG Processing 822/1135 atomic regions from SNP 246372 to 246972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,798 DEBUG Processing 865/1024 atomic regions from SNP 259373 to 259973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,920 DEBUG Processing 823/1135 atomic regions from SNP 246672 to 247272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,089 DEBUG Processing 866/1024 atomic regions from SNP 259673 to 260273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,217 DEBUG Processing 824/1135 atomic regions from SNP 246972 to 247572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,378 DEBUG Processing 867/1024 atomic regions from SNP 259973 to 260573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,522 DEBUG Processing 825/1135 atomic regions from SNP 247272 to 247872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,660 DEBUG Processing 868/1024 atomic regions from SNP 260273 to 260873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,839 DEBUG Processing 826/1135 atomic regions from SNP 247572 to 248172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,944 DEBUG Processing 869/1024 atomic regions from SNP 260573 to 261173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,140 DEBUG Processing 827/1135 atomic regions from SNP 247872 to 248472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,226 DEBUG Processing 870/1024 atomic regions from SNP 260873 to 261473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,448 DEBUG Processing 828/1135 atomic regions from SNP 248172 to 248772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,522 DEBUG Processing 871/1024 atomic regions from SNP 261173 to 261773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,753 DEBUG Processing 829/1135 atomic regions from SNP 248472 to 249072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,807 DEBUG Processing 872/1024 atomic regions from SNP 261473 to 262073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,057 DEBUG Processing 830/1135 atomic regions from SNP 248772 to 249372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,097 DEBUG Processing 873/1024 atomic regions from SNP 261773 to 262373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,360 DEBUG Processing 831/1135 atomic regions from SNP 249072 to 249672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,390 DEBUG Processing 874/1024 atomic regions from SNP 262073 to 262673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,660 DEBUG Processing 832/1135 atomic regions from SNP 249372 to 249972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,682 DEBUG Processing 875/1024 atomic regions from SNP 262373 to 262973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,961 DEBUG Processing 833/1135 atomic regions from SNP 249672 to 250272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,975 DEBUG Processing 876/1024 atomic regions from SNP 262673 to 263273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,261 DEBUG Processing 834/1135 atomic regions from SNP 249972 to 250572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,298 DEBUG Processing 877/1024 atomic regions from SNP 262973 to 263573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,551 DEBUG Processing 835/1135 atomic regions from SNP 250272 to 250872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,593 DEBUG Processing 878/1024 atomic regions from SNP 263273 to 263873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,845 DEBUG Processing 836/1135 atomic regions from SNP 250572 to 251172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,886 DEBUG Processing 879/1024 atomic regions from SNP 263573 to 264173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,140 DEBUG Processing 837/1135 atomic regions from SNP 250872 to 251472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,172 DEBUG Processing 880/1024 atomic regions from SNP 263873 to 264473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,437 DEBUG Processing 838/1135 atomic regions from SNP 251172 to 251772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,459 DEBUG Processing 881/1024 atomic regions from SNP 264173 to 264773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,733 DEBUG Processing 839/1135 atomic regions from SNP 251472 to 252072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,752 DEBUG Processing 882/1024 atomic regions from SNP 264473 to 265073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,037 DEBUG Processing 840/1135 atomic regions from SNP 251772 to 252372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,055 DEBUG Processing 883/1024 atomic regions from SNP 264773 to 265373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,354 DEBUG Processing 841/1135 atomic regions from SNP 252072 to 252672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,384 DEBUG Processing 884/1024 atomic regions from SNP 265073 to 265673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,659 DEBUG Processing 842/1135 atomic regions from SNP 252372 to 252972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,703 DEBUG Processing 885/1024 atomic regions from SNP 265373 to 265973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,962 DEBUG Processing 843/1135 atomic regions from SNP 252672 to 253272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,010 DEBUG Processing 886/1024 atomic regions from SNP 265673 to 266273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,263 DEBUG Processing 844/1135 atomic regions from SNP 252972 to 253572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,337 DEBUG Processing 887/1024 atomic regions from SNP 265973 to 266573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,573 DEBUG Processing 845/1135 atomic regions from SNP 253272 to 253872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,651 DEBUG Processing 888/1024 atomic regions from SNP 266273 to 266873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,871 DEBUG Processing 846/1135 atomic regions from SNP 253572 to 254172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,954 DEBUG Processing 889/1024 atomic regions from SNP 266573 to 267173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,166 DEBUG Processing 847/1135 atomic regions from SNP 253872 to 254472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,271 DEBUG Processing 890/1024 atomic regions from SNP 266873 to 267473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,465 DEBUG Processing 848/1135 atomic regions from SNP 254172 to 254772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,586 DEBUG Processing 891/1024 atomic regions from SNP 267173 to 267773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,764 DEBUG Processing 849/1135 atomic regions from SNP 254472 to 255072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,913 DEBUG Processing 892/1024 atomic regions from SNP 267473 to 268073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,058 DEBUG Processing 850/1135 atomic regions from SNP 254772 to 255372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,219 DEBUG Processing 893/1024 atomic regions from SNP 267773 to 268373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,354 DEBUG Processing 851/1135 atomic regions from SNP 255072 to 255672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,518 DEBUG Processing 894/1024 atomic regions from SNP 268073 to 268673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,647 DEBUG Processing 852/1135 atomic regions from SNP 255372 to 255972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,800 DEBUG Processing 895/1024 atomic regions from SNP 268373 to 268973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,939 DEBUG Processing 853/1135 atomic regions from SNP 255672 to 256272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,086 DEBUG Processing 896/1024 atomic regions from SNP 268673 to 269273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,229 DEBUG Processing 854/1135 atomic regions from SNP 255972 to 256572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,397 DEBUG Processing 897/1024 atomic regions from SNP 268973 to 269573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,528 DEBUG Processing 855/1135 atomic regions from SNP 256272 to 256872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,715 DEBUG Processing 898/1024 atomic regions from SNP 269273 to 269873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,816 DEBUG Processing 856/1135 atomic regions from SNP 256572 to 257172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,034 DEBUG Processing 899/1024 atomic regions from SNP 269573 to 270173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,109 DEBUG Processing 857/1135 atomic regions from SNP 256872 to 257472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,322 DEBUG Processing 900/1024 atomic regions from SNP 269873 to 270473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,400 DEBUG Processing 858/1135 atomic regions from SNP 257172 to 257772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,623 DEBUG Processing 901/1024 atomic regions from SNP 270173 to 270773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,690 DEBUG Processing 859/1135 atomic regions from SNP 257472 to 258072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,905 DEBUG Processing 902/1024 atomic regions from SNP 270473 to 271073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,987 DEBUG Processing 860/1135 atomic regions from SNP 257772 to 258372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,183 DEBUG Processing 903/1024 atomic regions from SNP 270773 to 271373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,289 DEBUG Processing 861/1135 atomic regions from SNP 258072 to 258672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,494 DEBUG Processing 904/1024 atomic regions from SNP 271073 to 271673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,587 DEBUG Processing 862/1135 atomic regions from SNP 258372 to 258972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,796 DEBUG Processing 905/1024 atomic regions from SNP 271373 to 271973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,883 DEBUG Processing 863/1135 atomic regions from SNP 258672 to 259272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,105 DEBUG Processing 906/1024 atomic regions from SNP 271673 to 272273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,182 DEBUG Processing 864/1135 atomic regions from SNP 258972 to 259572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,411 DEBUG Processing 907/1024 atomic regions from SNP 271973 to 272573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,479 DEBUG Processing 865/1135 atomic regions from SNP 259272 to 259872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,730 DEBUG Processing 908/1024 atomic regions from SNP 272273 to 272873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,776 DEBUG Processing 866/1135 atomic regions from SNP 259572 to 260172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,041 DEBUG Processing 909/1024 atomic regions from SNP 272573 to 273173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,102 DEBUG Processing 867/1135 atomic regions from SNP 259872 to 260472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,340 DEBUG Processing 910/1024 atomic regions from SNP 272873 to 273473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,423 DEBUG Processing 868/1135 atomic regions from SNP 260172 to 260772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,644 DEBUG Processing 911/1024 atomic regions from SNP 273173 to 273773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,736 DEBUG Processing 869/1135 atomic regions from SNP 260472 to 261072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,963 DEBUG Processing 912/1024 atomic regions from SNP 273473 to 274073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,039 DEBUG Processing 870/1135 atomic regions from SNP 260772 to 261372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,278 DEBUG Processing 913/1024 atomic regions from SNP 273773 to 274373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,339 DEBUG Processing 871/1135 atomic regions from SNP 261072 to 261672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,595 DEBUG Processing 914/1024 atomic regions from SNP 274073 to 274673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,647 DEBUG Processing 872/1135 atomic regions from SNP 261372 to 261972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,904 DEBUG Processing 915/1024 atomic regions from SNP 274373 to 274973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,952 DEBUG Processing 873/1135 atomic regions from SNP 261672 to 262272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,222 DEBUG Processing 916/1024 atomic regions from SNP 274673 to 275273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,254 DEBUG Processing 874/1135 atomic regions from SNP 261972 to 262572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,544 DEBUG Processing 917/1024 atomic regions from SNP 274973 to 275573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,553 DEBUG Processing 875/1135 atomic regions from SNP 262272 to 262872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,848 DEBUG Processing 876/1135 atomic regions from SNP 262572 to 263172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,864 DEBUG Processing 918/1024 atomic regions from SNP 275273 to 275873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,150 DEBUG Processing 877/1135 atomic regions from SNP 262872 to 263472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,166 DEBUG Processing 919/1024 atomic regions from SNP 275573 to 276173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,464 DEBUG Processing 878/1135 atomic regions from SNP 263172 to 263772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,471 DEBUG Processing 920/1024 atomic regions from SNP 275873 to 276473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,774 DEBUG Processing 879/1135 atomic regions from SNP 263472 to 264072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,782 DEBUG Processing 921/1024 atomic regions from SNP 276173 to 276773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,081 DEBUG Processing 880/1135 atomic regions from SNP 263772 to 264372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,101 DEBUG Processing 922/1024 atomic regions from SNP 276473 to 277073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,387 DEBUG Processing 881/1135 atomic regions from SNP 264072 to 264672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,415 DEBUG Processing 923/1024 atomic regions from SNP 276773 to 277373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,693 DEBUG Processing 882/1135 atomic regions from SNP 264372 to 264972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,742 DEBUG Processing 924/1024 atomic regions from SNP 277073 to 277673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,995 DEBUG Processing 883/1135 atomic regions from SNP 264672 to 265272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,042 DEBUG Processing 925/1024 atomic regions from SNP 277373 to 277973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,295 DEBUG Processing 884/1135 atomic regions from SNP 264972 to 265572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,333 DEBUG Processing 926/1024 atomic regions from SNP 277673 to 278273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,625 DEBUG Processing 885/1135 atomic regions from SNP 265272 to 265872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,654 DEBUG Processing 927/1024 atomic regions from SNP 277973 to 278573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,931 DEBUG Processing 886/1135 atomic regions from SNP 265572 to 266172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,949 DEBUG Processing 928/1024 atomic regions from SNP 278273 to 278873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,232 DEBUG Processing 887/1135 atomic regions from SNP 265872 to 266472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,243 DEBUG Processing 929/1024 atomic regions from SNP 278573 to 279173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,539 DEBUG Processing 888/1135 atomic regions from SNP 266172 to 266772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,541 DEBUG Processing 930/1024 atomic regions from SNP 278873 to 279473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,833 DEBUG Processing 931/1024 atomic regions from SNP 279173 to 279773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,838 DEBUG Processing 889/1135 atomic regions from SNP 266472 to 267072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,130 DEBUG Processing 932/1024 atomic regions from SNP 279473 to 280073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,142 DEBUG Processing 890/1135 atomic regions from SNP 266772 to 267372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,415 DEBUG Processing 933/1024 atomic regions from SNP 279773 to 280373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,461 DEBUG Processing 891/1135 atomic regions from SNP 267072 to 267672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,695 DEBUG Processing 934/1024 atomic regions from SNP 280073 to 280673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,794 DEBUG Processing 892/1135 atomic regions from SNP 267372 to 267972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,983 DEBUG Processing 935/1024 atomic regions from SNP 280373 to 280973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,129 DEBUG Processing 893/1135 atomic regions from SNP 267672 to 268272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,290 DEBUG Processing 936/1024 atomic regions from SNP 280673 to 281273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,446 DEBUG Processing 894/1135 atomic regions from SNP 267972 to 268572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,562 DEBUG Segmenting atomic regions: 2025-01-31 09:48:12,583 DEBUG Processing 937/1024 atomic regions from SNP 280973 to 281573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,679 DEBUG Processing 1/857 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,768 DEBUG Processing 895/1135 atomic regions from SNP 268272 to 268872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,877 DEBUG Processing 938/1024 atomic regions from SNP 281273 to 281873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,925 DEBUG Processing 2/857 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,085 DEBUG Processing 896/1135 atomic regions from SNP 268572 to 269172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,164 DEBUG Processing 939/1024 atomic regions from SNP 281573 to 282173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,170 DEBUG Processing 3/857 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,401 DEBUG Processing 897/1135 atomic regions from SNP 268872 to 269472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,418 DEBUG Processing 4/857 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,460 DEBUG Processing 940/1024 atomic regions from SNP 281873 to 282473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,668 DEBUG Processing 5/857 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,724 DEBUG Processing 898/1135 atomic regions from SNP 269172 to 269772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,751 DEBUG Processing 941/1024 atomic regions from SNP 282173 to 282773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,917 DEBUG Processing 6/857 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,048 DEBUG Processing 899/1135 atomic regions from SNP 269472 to 270072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,049 DEBUG Processing 942/1024 atomic regions from SNP 282473 to 283073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,168 DEBUG Processing 7/857 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,345 DEBUG Processing 943/1024 atomic regions from SNP 282773 to 283373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,359 DEBUG Processing 900/1135 atomic regions from SNP 269772 to 270372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,415 DEBUG Processing 8/857 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,640 DEBUG Processing 944/1024 atomic regions from SNP 283073 to 283673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,668 DEBUG Processing 9/857 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,688 DEBUG Processing 901/1135 atomic regions from SNP 270072 to 270672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,920 DEBUG Processing 10/857 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,937 DEBUG Processing 945/1024 atomic regions from SNP 283373 to 283973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,036 DEBUG Processing 902/1135 atomic regions from SNP 270372 to 270972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,181 DEBUG Processing 11/857 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,234 DEBUG Processing 946/1024 atomic regions from SNP 283673 to 284273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,352 DEBUG Processing 903/1135 atomic regions from SNP 270672 to 271272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,427 DEBUG Processing 12/857 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,517 DEBUG Processing 947/1024 atomic regions from SNP 283973 to 284573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,670 DEBUG Processing 904/1135 atomic regions from SNP 270972 to 271572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,698 DEBUG Processing 13/857 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,799 DEBUG Processing 948/1024 atomic regions from SNP 284273 to 284873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,972 DEBUG Processing 14/857 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,974 DEBUG Processing 905/1135 atomic regions from SNP 271272 to 271872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,080 DEBUG Processing 949/1024 atomic regions from SNP 284573 to 285173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,226 DEBUG Processing 15/857 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,289 DEBUG Processing 906/1135 atomic regions from SNP 271572 to 272172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,378 DEBUG Processing 950/1024 atomic regions from SNP 284873 to 285473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,476 DEBUG Processing 16/857 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,598 DEBUG Processing 907/1135 atomic regions from SNP 271872 to 272472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,669 DEBUG Processing 951/1024 atomic regions from SNP 285173 to 285773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,721 DEBUG Processing 17/857 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,903 DEBUG Processing 908/1135 atomic regions from SNP 272172 to 272772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,965 DEBUG Processing 952/1024 atomic regions from SNP 285473 to 286073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,968 DEBUG Processing 18/857 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,202 DEBUG Processing 909/1135 atomic regions from SNP 272472 to 273072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,218 DEBUG Processing 19/857 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,275 DEBUG Processing 953/1024 atomic regions from SNP 285773 to 286373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,465 DEBUG Processing 20/857 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,503 DEBUG Processing 910/1135 atomic regions from SNP 272772 to 273372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,586 DEBUG Processing 954/1024 atomic regions from SNP 286073 to 286673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,711 DEBUG Processing 21/857 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,800 DEBUG Processing 911/1135 atomic regions from SNP 273072 to 273672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,900 DEBUG Processing 955/1024 atomic regions from SNP 286373 to 286973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,960 DEBUG Processing 22/857 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,096 DEBUG Processing 912/1135 atomic regions from SNP 273372 to 273972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,189 DEBUG Processing 956/1024 atomic regions from SNP 286673 to 287273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,210 DEBUG Processing 23/857 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,397 DEBUG Processing 913/1135 atomic regions from SNP 273672 to 274272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,457 DEBUG Processing 24/857 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,478 DEBUG Processing 957/1024 atomic regions from SNP 286973 to 287573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,705 DEBUG Processing 914/1135 atomic regions from SNP 273972 to 274572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,706 DEBUG Processing 25/857 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,769 DEBUG Processing 958/1024 atomic regions from SNP 287273 to 287873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,957 DEBUG Processing 26/857 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,009 DEBUG Processing 915/1135 atomic regions from SNP 274272 to 274872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,058 DEBUG Processing 959/1024 atomic regions from SNP 287573 to 288173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,220 DEBUG Processing 27/857 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,306 DEBUG Processing 916/1135 atomic regions from SNP 274572 to 275172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,354 DEBUG Processing 960/1024 atomic regions from SNP 287873 to 288473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,490 DEBUG Processing 28/857 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,607 DEBUG Processing 917/1135 atomic regions from SNP 274872 to 275472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,667 DEBUG Processing 961/1024 atomic regions from SNP 288173 to 288773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,751 DEBUG Processing 29/857 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,932 DEBUG Processing 918/1135 atomic regions from SNP 275172 to 275772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,001 DEBUG Processing 962/1024 atomic regions from SNP 288473 to 289073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,007 DEBUG Processing 30/857 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,235 DEBUG Processing 919/1135 atomic regions from SNP 275472 to 276072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,267 DEBUG Processing 31/857 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,324 DEBUG Processing 963/1024 atomic regions from SNP 288773 to 289373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,536 DEBUG Processing 920/1135 atomic regions from SNP 275772 to 276372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,546 DEBUG Processing 32/857 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,631 DEBUG Processing 964/1024 atomic regions from SNP 289073 to 289673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,814 DEBUG Processing 33/857 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,842 DEBUG Processing 921/1135 atomic regions from SNP 276072 to 276672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,938 DEBUG Processing 965/1024 atomic regions from SNP 289373 to 289973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,065 DEBUG Processing 34/857 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,165 DEBUG Processing 922/1135 atomic regions from SNP 276372 to 276972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,235 DEBUG Processing 966/1024 atomic regions from SNP 289673 to 290273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,314 DEBUG Processing 35/857 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,504 DEBUG Processing 923/1135 atomic regions from SNP 276672 to 277272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,529 DEBUG Processing 967/1024 atomic regions from SNP 289973 to 290573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,565 DEBUG Processing 36/857 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,813 DEBUG Processing 37/857 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,828 DEBUG Processing 924/1135 atomic regions from SNP 276972 to 277572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,839 DEBUG Processing 968/1024 atomic regions from SNP 290273 to 290873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,058 DEBUG Processing 38/857 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,129 DEBUG Processing 925/1135 atomic regions from SNP 277272 to 277872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,160 DEBUG Processing 969/1024 atomic regions from SNP 290573 to 291173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,304 DEBUG Processing 39/857 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,431 DEBUG Processing 926/1135 atomic regions from SNP 277572 to 278172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,473 DEBUG Processing 970/1024 atomic regions from SNP 290873 to 291473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,554 DEBUG Processing 40/857 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,758 DEBUG Processing 927/1135 atomic regions from SNP 277872 to 278472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,768 DEBUG Processing 971/1024 atomic regions from SNP 291173 to 291773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,798 DEBUG Processing 41/857 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,042 DEBUG Processing 42/857 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,061 DEBUG Processing 972/1024 atomic regions from SNP 291473 to 292073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,080 DEBUG Processing 928/1135 atomic regions from SNP 278172 to 278772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,292 DEBUG Processing 43/857 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,359 DEBUG Processing 973/1024 atomic regions from SNP 291773 to 292373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,421 DEBUG Processing 929/1135 atomic regions from SNP 278472 to 279072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,548 DEBUG Processing 44/857 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,667 DEBUG Processing 974/1024 atomic regions from SNP 292073 to 292673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,750 DEBUG Processing 930/1135 atomic regions from SNP 278772 to 279372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,800 DEBUG Processing 45/857 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,990 DEBUG Processing 975/1024 atomic regions from SNP 292373 to 292973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,052 DEBUG Processing 46/857 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,058 DEBUG Processing 931/1135 atomic regions from SNP 279072 to 279672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,297 DEBUG Processing 47/857 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,319 DEBUG Processing 976/1024 atomic regions from SNP 292673 to 293273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,352 DEBUG Processing 932/1135 atomic regions from SNP 279372 to 279972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,547 DEBUG Processing 48/857 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,634 DEBUG Processing 977/1024 atomic regions from SNP 292973 to 293573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,652 DEBUG Processing 933/1135 atomic regions from SNP 279672 to 280272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,813 DEBUG Processing 49/857 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,960 DEBUG Processing 978/1024 atomic regions from SNP 293273 to 293873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,969 DEBUG Processing 934/1135 atomic regions from SNP 279972 to 280572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,067 DEBUG Processing 50/857 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,268 DEBUG Processing 935/1135 atomic regions from SNP 280272 to 280872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,285 DEBUG Processing 979/1024 atomic regions from SNP 293573 to 294173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,314 DEBUG Processing 51/857 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,559 DEBUG Processing 52/857 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,569 DEBUG Processing 936/1135 atomic regions from SNP 280572 to 281172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,616 DEBUG Processing 980/1024 atomic regions from SNP 293873 to 294473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,808 DEBUG Processing 53/857 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,865 DEBUG Processing 937/1135 atomic regions from SNP 280872 to 281472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,934 DEBUG Processing 981/1024 atomic regions from SNP 294173 to 294773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,053 DEBUG Processing 54/857 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,185 DEBUG Processing 938/1135 atomic regions from SNP 281172 to 281772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,256 DEBUG Processing 982/1024 atomic regions from SNP 294473 to 295073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,300 DEBUG Processing 55/857 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,498 DEBUG Processing 939/1135 atomic regions from SNP 281472 to 282072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,547 DEBUG Processing 56/857 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,577 DEBUG Processing 983/1024 atomic regions from SNP 294773 to 295373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,795 DEBUG Processing 57/857 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,803 DEBUG Processing 940/1135 atomic regions from SNP 281772 to 282372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,873 DEBUG Processing 984/1024 atomic regions from SNP 295073 to 295673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,038 DEBUG Processing 58/857 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,104 DEBUG Processing 941/1135 atomic regions from SNP 282072 to 282672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,168 DEBUG Processing 985/1024 atomic regions from SNP 295373 to 295973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,283 DEBUG Processing 59/857 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,405 DEBUG Processing 942/1135 atomic regions from SNP 282372 to 282972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,463 DEBUG Processing 986/1024 atomic regions from SNP 295673 to 296273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,531 DEBUG Processing 60/857 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,706 DEBUG Processing 943/1135 atomic regions from SNP 282672 to 283272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,755 DEBUG Processing 987/1024 atomic regions from SNP 295973 to 296573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,785 DEBUG Processing 61/857 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,004 DEBUG Processing 944/1135 atomic regions from SNP 282972 to 283572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,035 DEBUG Processing 62/857 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,054 DEBUG Processing 988/1024 atomic regions from SNP 296273 to 296873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,282 DEBUG Processing 63/857 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,307 DEBUG Processing 945/1135 atomic regions from SNP 283272 to 283872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,351 DEBUG Processing 989/1024 atomic regions from SNP 296573 to 297173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,527 DEBUG Processing 64/857 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,617 DEBUG Processing 946/1135 atomic regions from SNP 283572 to 284172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,659 DEBUG Processing 990/1024 atomic regions from SNP 296873 to 297473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,773 DEBUG Processing 65/857 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,920 DEBUG Processing 947/1135 atomic regions from SNP 283872 to 284472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,958 DEBUG Processing 991/1024 atomic regions from SNP 297173 to 297773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,018 DEBUG Processing 66/857 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,254 DEBUG Processing 992/1024 atomic regions from SNP 297473 to 298073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,258 DEBUG Processing 67/857 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,259 DEBUG Processing 948/1135 atomic regions from SNP 284172 to 284772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,500 DEBUG Processing 68/857 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,555 DEBUG Processing 993/1024 atomic regions from SNP 297773 to 298373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,582 DEBUG Processing 949/1135 atomic regions from SNP 284472 to 285072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,740 DEBUG Processing 69/857 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,857 DEBUG Processing 994/1024 atomic regions from SNP 298073 to 298673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,895 DEBUG Processing 950/1135 atomic regions from SNP 284772 to 285372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,986 DEBUG Processing 70/857 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,177 DEBUG Processing 995/1024 atomic regions from SNP 298373 to 298973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,208 DEBUG Processing 951/1135 atomic regions from SNP 285072 to 285672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,234 DEBUG Processing 71/857 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,482 DEBUG Processing 72/857 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,514 DEBUG Processing 996/1024 atomic regions from SNP 298673 to 299273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,517 DEBUG Processing 952/1135 atomic regions from SNP 285372 to 285972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,731 DEBUG Processing 73/857 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,819 DEBUG Processing 997/1024 atomic regions from SNP 298973 to 299573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,857 DEBUG Processing 953/1135 atomic regions from SNP 285672 to 286272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,988 DEBUG Processing 74/857 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,118 DEBUG Processing 998/1024 atomic regions from SNP 299273 to 299873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,200 DEBUG Processing 954/1135 atomic regions from SNP 285972 to 286572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,232 DEBUG Processing 75/857 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,417 DEBUG Processing 999/1024 atomic regions from SNP 299573 to 300173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,480 DEBUG Processing 76/857 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,545 DEBUG Processing 955/1135 atomic regions from SNP 286272 to 286872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,715 DEBUG Processing 1000/1024 atomic regions from SNP 299873 to 300473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,733 DEBUG Processing 77/857 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,885 DEBUG Processing 956/1135 atomic regions from SNP 286572 to 287172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,983 DEBUG Processing 78/857 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,016 DEBUG Processing 1001/1024 atomic regions from SNP 300173 to 300773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,227 DEBUG Processing 79/857 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,234 DEBUG Processing 957/1135 atomic regions from SNP 286872 to 287472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,313 DEBUG Processing 1002/1024 atomic regions from SNP 300473 to 301073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,472 DEBUG Processing 80/857 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,579 DEBUG Processing 958/1135 atomic regions from SNP 287172 to 287772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,614 DEBUG Processing 1003/1024 atomic regions from SNP 300773 to 301373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,739 DEBUG Processing 81/857 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,923 DEBUG Processing 1004/1024 atomic regions from SNP 301073 to 301673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,929 DEBUG Processing 959/1135 atomic regions from SNP 287472 to 288072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,991 DEBUG Processing 82/857 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,224 DEBUG Processing 1005/1024 atomic regions from SNP 301373 to 301973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,237 DEBUG Processing 960/1135 atomic regions from SNP 287772 to 288372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,238 DEBUG Processing 83/857 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,508 DEBUG Processing 84/857 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,519 DEBUG Processing 1006/1024 atomic regions from SNP 301673 to 302273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,539 DEBUG Processing 961/1135 atomic regions from SNP 288072 to 288672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,759 DEBUG Processing 85/857 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,818 DEBUG Processing 1007/1024 atomic regions from SNP 301973 to 302573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,850 DEBUG Processing 962/1135 atomic regions from SNP 288372 to 288972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,012 DEBUG Processing 86/857 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,121 DEBUG Processing 1008/1024 atomic regions from SNP 302273 to 302873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,162 DEBUG Processing 963/1135 atomic regions from SNP 288672 to 289272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,256 DEBUG Processing 87/857 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,449 DEBUG Processing 1009/1024 atomic regions from SNP 302573 to 303173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,468 DEBUG Processing 964/1135 atomic regions from SNP 288972 to 289572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,492 DEBUG Processing 88/857 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,747 DEBUG Processing 89/857 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,774 DEBUG Processing 965/1135 atomic regions from SNP 289272 to 289872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,776 DEBUG Processing 1010/1024 atomic regions from SNP 302873 to 303473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,004 DEBUG Processing 90/857 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,070 DEBUG Processing 1011/1024 atomic regions from SNP 303173 to 303773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,111 DEBUG Processing 966/1135 atomic regions from SNP 289572 to 290172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,254 DEBUG Processing 91/857 atomic regions from SNP 27090 to 27691 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,363 DEBUG Processing 1012/1024 atomic regions from SNP 303473 to 304073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,448 DEBUG Processing 967/1135 atomic regions from SNP 289872 to 290472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,493 DEBUG Processing 92/857 atomic regions from SNP 27391 to 27992 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,682 DEBUG Processing 1013/1024 atomic regions from SNP 303773 to 304373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,740 DEBUG Processing 93/857 atomic regions from SNP 27692 to 28293 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,756 DEBUG Processing 968/1135 atomic regions from SNP 290172 to 290772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,994 DEBUG Processing 94/857 atomic regions from SNP 27993 to 28594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,000 DEBUG Processing 1014/1024 atomic regions from SNP 304073 to 304673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,064 DEBUG Processing 969/1135 atomic regions from SNP 290472 to 291072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,248 DEBUG Processing 95/857 atomic regions from SNP 28294 to 28895 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,297 DEBUG Processing 1015/1024 atomic regions from SNP 304373 to 304973 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,373 DEBUG Processing 970/1135 atomic regions from SNP 290772 to 291372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,517 DEBUG Processing 96/857 atomic regions from SNP 28595 to 29196 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,594 DEBUG Processing 1016/1024 atomic regions from SNP 304673 to 305273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,673 DEBUG Processing 971/1135 atomic regions from SNP 291072 to 291672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,771 DEBUG Processing 97/857 atomic regions from SNP 28896 to 29497 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,883 DEBUG Processing 1017/1024 atomic regions from SNP 304973 to 305573 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,992 DEBUG Processing 972/1135 atomic regions from SNP 291372 to 291972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,013 DEBUG Processing 98/857 atomic regions from SNP 29197 to 29798 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,170 DEBUG Processing 1018/1024 atomic regions from SNP 305273 to 305873 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,253 DEBUG Processing 99/857 atomic regions from SNP 29498 to 30099 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,311 DEBUG Processing 973/1135 atomic regions from SNP 291672 to 292272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,461 DEBUG Processing 1019/1024 atomic regions from SNP 305573 to 306173 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,496 DEBUG Processing 100/857 atomic regions from SNP 29799 to 30400 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,607 DEBUG Processing 974/1135 atomic regions from SNP 291972 to 292572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,739 DEBUG Processing 101/857 atomic regions from SNP 30100 to 30701 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,748 DEBUG Processing 1020/1024 atomic regions from SNP 305873 to 306473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,897 DEBUG Processing 975/1135 atomic regions from SNP 292272 to 292872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,982 DEBUG Processing 102/857 atomic regions from SNP 30401 to 31002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,053 DEBUG Processing 1021/1024 atomic regions from SNP 306173 to 306773 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,207 DEBUG Processing 976/1135 atomic regions from SNP 292572 to 293172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,238 DEBUG Processing 103/857 atomic regions from SNP 30702 to 31303 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,381 DEBUG Processing 1022/1024 atomic regions from SNP 306473 to 307073 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,486 DEBUG Processing 104/857 atomic regions from SNP 31003 to 31604 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,506 DEBUG Processing 977/1135 atomic regions from SNP 292872 to 293472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,698 DEBUG Processing 1023/1024 atomic regions from SNP 306773 to 307373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,735 DEBUG Processing 105/857 atomic regions from SNP 31304 to 31905 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,807 DEBUG Processing 978/1135 atomic regions from SNP 293172 to 293772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,981 DEBUG Processing 106/857 atomic regions from SNP 31605 to 32206 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,992 DEBUG Processing 1024/1024 atomic regions from SNP 307073 to 307673 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,106 DEBUG Processing 979/1135 atomic regions from SNP 293472 to 294072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,160 DEBUG Unique SNPs positions in subchromosome 1: 307674 2025-01-31 09:48:39,230 DEBUG Processing 107/857 atomic regions from SNP 31906 to 32507 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,408 DEBUG Processing 980/1135 atomic regions from SNP 293772 to 294372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,476 DEBUG Processing 108/857 atomic regions from SNP 32207 to 32808 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,707 DEBUG Processing 981/1135 atomic regions from SNP 294072 to 294672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,726 DEBUG Processing 109/857 atomic regions from SNP 32508 to 33109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,974 DEBUG Processing 110/857 atomic regions from SNP 32809 to 33410 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,018 DEBUG Processing 982/1135 atomic regions from SNP 294372 to 294972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,222 DEBUG Processing 111/857 atomic regions from SNP 33110 to 33711 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,327 DEBUG Processing 983/1135 atomic regions from SNP 294672 to 295272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,475 DEBUG Processing 112/857 atomic regions from SNP 33411 to 34012 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,638 DEBUG Processing 984/1135 atomic regions from SNP 294972 to 295572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,731 DEBUG Processing 113/857 atomic regions from SNP 33712 to 34313 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,946 DEBUG Processing 985/1135 atomic regions from SNP 295272 to 295872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,977 DEBUG Processing 114/857 atomic regions from SNP 34013 to 34614 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,225 DEBUG Processing 115/857 atomic regions from SNP 34314 to 34915 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,252 DEBUG Processing 986/1135 atomic regions from SNP 295572 to 296172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,474 DEBUG Processing 116/857 atomic regions from SNP 34615 to 35216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,561 DEBUG Processing 987/1135 atomic regions from SNP 295872 to 296472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,715 DEBUG Processing 117/857 atomic regions from SNP 34916 to 35517 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,888 DEBUG Processing 988/1135 atomic regions from SNP 296172 to 296772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,961 DEBUG Processing 118/857 atomic regions from SNP 35217 to 35818 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,208 DEBUG Processing 119/857 atomic regions from SNP 35518 to 36119 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,217 DEBUG Processing 989/1135 atomic regions from SNP 296472 to 297072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,456 DEBUG Processing 120/857 atomic regions from SNP 35819 to 36420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,576 DEBUG Processing 990/1135 atomic regions from SNP 296772 to 297372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,697 DEBUG Processing 121/857 atomic regions from SNP 36120 to 36721 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,900 DEBUG Processing 991/1135 atomic regions from SNP 297072 to 297672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,939 DEBUG Processing 122/857 atomic regions from SNP 36421 to 37022 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,175 DEBUG Processing 123/857 atomic regions from SNP 36722 to 37323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,213 DEBUG Processing 992/1135 atomic regions from SNP 297372 to 297972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,412 DEBUG Processing 124/857 atomic regions from SNP 37023 to 37624 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,505 DEBUG Processing 993/1135 atomic regions from SNP 297672 to 298272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,652 DEBUG Processing 125/857 atomic regions from SNP 37324 to 37925 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,788 DEBUG Processing 994/1135 atomic regions from SNP 297972 to 298572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,899 DEBUG Processing 126/857 atomic regions from SNP 37625 to 38226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,080 DEBUG Processing 995/1135 atomic regions from SNP 298272 to 298872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,147 DEBUG Processing 127/857 atomic regions from SNP 37926 to 38527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,396 DEBUG Processing 128/857 atomic regions from SNP 38227 to 38828 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,405 DEBUG Processing 996/1135 atomic regions from SNP 298572 to 299172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,647 DEBUG Processing 129/857 atomic regions from SNP 38528 to 39129 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,736 DEBUG Processing 997/1135 atomic regions from SNP 298872 to 299472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,900 DEBUG Processing 130/857 atomic regions from SNP 38829 to 39430 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,031 DEBUG Processing 998/1135 atomic regions from SNP 299172 to 299772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,145 DEBUG Processing 131/857 atomic regions from SNP 39130 to 39731 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,314 DEBUG Processing 999/1135 atomic regions from SNP 299472 to 300072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,381 DEBUG Processing 132/857 atomic regions from SNP 39431 to 40032 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,609 DEBUG Processing 1000/1135 atomic regions from SNP 299772 to 300372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,620 DEBUG Processing 133/857 atomic regions from SNP 39732 to 40333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,862 DEBUG Processing 134/857 atomic regions from SNP 40033 to 40634 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,891 DEBUG Processing 1001/1135 atomic regions from SNP 300072 to 300672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,103 DEBUG Processing 135/857 atomic regions from SNP 40334 to 40935 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,172 DEBUG Processing 1002/1135 atomic regions from SNP 300372 to 300972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,331 DEBUG Processing 136/857 atomic regions from SNP 40635 to 41236 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,449 DEBUG Processing 1003/1135 atomic regions from SNP 300672 to 301272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,552 DEBUG Processing 137/857 atomic regions from SNP 40936 to 41537 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,728 DEBUG Processing 1004/1135 atomic regions from SNP 300972 to 301572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,774 DEBUG Processing 138/857 atomic regions from SNP 41237 to 41838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,009 DEBUG Processing 139/857 atomic regions from SNP 41538 to 42139 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,016 DEBUG Processing 1005/1135 atomic regions from SNP 301272 to 301872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,240 DEBUG Processing 140/857 atomic regions from SNP 41839 to 42440 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,301 DEBUG Processing 1006/1135 atomic regions from SNP 301572 to 302172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,467 DEBUG Processing 141/857 atomic regions from SNP 42140 to 42741 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,585 DEBUG Processing 1007/1135 atomic regions from SNP 301872 to 302472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,624 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:48:47,694 DEBUG Processing 142/857 atomic regions from SNP 42441 to 43042 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,868 DEBUG Processing 1008/1135 atomic regions from SNP 302172 to 302772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,927 DEBUG Processing 143/857 atomic regions from SNP 42742 to 43343 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,151 DEBUG Processing 1009/1135 atomic regions from SNP 302472 to 303072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,178 DEBUG Processing 144/857 atomic regions from SNP 43043 to 43644 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,434 DEBUG Processing 145/857 atomic regions from SNP 43344 to 43945 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,440 DEBUG Processing 1010/1135 atomic regions from SNP 302772 to 303372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,686 DEBUG Processing 146/857 atomic regions from SNP 43645 to 44246 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,729 DEBUG Processing 1011/1135 atomic regions from SNP 303072 to 303672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,936 DEBUG Processing 147/857 atomic regions from SNP 43946 to 44547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,016 DEBUG Processing 1012/1135 atomic regions from SNP 303372 to 303972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,183 DEBUG Processing 148/857 atomic regions from SNP 44247 to 44848 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,302 DEBUG Processing 1013/1135 atomic regions from SNP 303672 to 304272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,429 DEBUG Processing 149/857 atomic regions from SNP 44548 to 45149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,600 DEBUG Processing 1014/1135 atomic regions from SNP 303972 to 304572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,707 DEBUG Processing 150/857 atomic regions from SNP 44849 to 45450 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,888 DEBUG Processing 1015/1135 atomic regions from SNP 304272 to 304872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,972 DEBUG Processing 151/857 atomic regions from SNP 45150 to 45751 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,186 DEBUG Processing 1016/1135 atomic regions from SNP 304572 to 305172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,247 DEBUG Processing 152/857 atomic regions from SNP 45451 to 46052 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,479 DEBUG Processing 1017/1135 atomic regions from SNP 304872 to 305472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,535 DEBUG Processing 153/857 atomic regions from SNP 45752 to 46353 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,761 DEBUG Processing 1018/1135 atomic regions from SNP 305172 to 305772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,792 DEBUG Processing 154/857 atomic regions from SNP 46053 to 46654 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,043 DEBUG Processing 155/857 atomic regions from SNP 46354 to 46955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,045 DEBUG Processing 1019/1135 atomic regions from SNP 305472 to 306072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,309 DEBUG Processing 156/857 atomic regions from SNP 46655 to 47256 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,327 DEBUG Processing 1020/1135 atomic regions from SNP 305772 to 306372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,583 DEBUG Processing 157/857 atomic regions from SNP 46956 to 47557 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,622 DEBUG Processing 1021/1135 atomic regions from SNP 306072 to 306672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,845 DEBUG Processing 158/857 atomic regions from SNP 47257 to 47858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,922 DEBUG Processing 1022/1135 atomic regions from SNP 306372 to 306972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,103 DEBUG Processing 159/857 atomic regions from SNP 47558 to 48159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,217 DEBUG Processing 1023/1135 atomic regions from SNP 306672 to 307272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,354 DEBUG Processing 160/857 atomic regions from SNP 47859 to 48460 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,533 DEBUG Processing 1024/1135 atomic regions from SNP 306972 to 307572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,614 DEBUG Processing 161/857 atomic regions from SNP 48160 to 48761 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,824 DEBUG Processing 1025/1135 atomic regions from SNP 307272 to 307872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,876 DEBUG Processing 162/857 atomic regions from SNP 48461 to 49062 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,111 DEBUG Processing 1026/1135 atomic regions from SNP 307572 to 308172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,119 DEBUG Processing 163/857 atomic regions from SNP 48762 to 49363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,371 DEBUG Processing 164/857 atomic regions from SNP 49063 to 49664 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,397 DEBUG Processing 1027/1135 atomic regions from SNP 307872 to 308472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,649 DEBUG Processing 165/857 atomic regions from SNP 49364 to 49965 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,681 DEBUG Processing 1028/1135 atomic regions from SNP 308172 to 308772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,876 DEBUG Processing 166/857 atomic regions from SNP 49665 to 50266 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,968 DEBUG Processing 1029/1135 atomic regions from SNP 308472 to 309072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,104 DEBUG Processing 167/857 atomic regions from SNP 49966 to 50567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,255 DEBUG Processing 1030/1135 atomic regions from SNP 308772 to 309372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,338 DEBUG Processing 168/857 atomic regions from SNP 50267 to 50868 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,551 DEBUG Processing 1031/1135 atomic regions from SNP 309072 to 309672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,572 DEBUG Processing 169/857 atomic regions from SNP 50568 to 51169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,809 DEBUG Processing 170/857 atomic regions from SNP 50869 to 51470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,858 DEBUG Processing 1032/1135 atomic regions from SNP 309372 to 309972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,042 DEBUG Processing 171/857 atomic regions from SNP 51170 to 51771 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,164 DEBUG Processing 1033/1135 atomic regions from SNP 309672 to 310272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,278 DEBUG Processing 172/857 atomic regions from SNP 51471 to 52072 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,453 DEBUG Processing 1034/1135 atomic regions from SNP 309972 to 310572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,528 DEBUG Processing 173/857 atomic regions from SNP 51772 to 52373 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,743 DEBUG Processing 1035/1135 atomic regions from SNP 310272 to 310872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,766 DEBUG Processing 174/857 atomic regions from SNP 52073 to 52674 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,999 DEBUG Processing 175/857 atomic regions from SNP 52374 to 52975 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,042 DEBUG Processing 1036/1135 atomic regions from SNP 310572 to 311172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,232 DEBUG Processing 176/857 atomic regions from SNP 52675 to 53276 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,329 DEBUG Processing 1037/1135 atomic regions from SNP 310872 to 311472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,466 DEBUG Processing 177/857 atomic regions from SNP 52976 to 53577 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,614 DEBUG Processing 1038/1135 atomic regions from SNP 311172 to 311772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,699 DEBUG Processing 178/857 atomic regions from SNP 53277 to 53878 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,908 DEBUG Processing 1039/1135 atomic regions from SNP 311472 to 312072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,940 DEBUG Processing 179/857 atomic regions from SNP 53578 to 54179 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,186 DEBUG Processing 180/857 atomic regions from SNP 53879 to 54480 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,230 DEBUG Processing 1040/1135 atomic regions from SNP 311772 to 312372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,423 DEBUG Processing 181/857 atomic regions from SNP 54180 to 54781 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,542 DEBUG Processing 1041/1135 atomic regions from SNP 312072 to 312672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,667 DEBUG Processing 182/857 atomic regions from SNP 54481 to 55082 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,840 DEBUG Processing 1042/1135 atomic regions from SNP 312372 to 312972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,908 DEBUG Processing 183/857 atomic regions from SNP 54782 to 55383 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,132 DEBUG Processing 1043/1135 atomic regions from SNP 312672 to 313272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,145 DEBUG Processing 184/857 atomic regions from SNP 55083 to 55684 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,374 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:48:58,400 DEBUG Processing 185/857 atomic regions from SNP 55384 to 55985 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,442 DEBUG Processing 1044/1135 atomic regions from SNP 312972 to 313572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,646 DEBUG Processing 186/857 atomic regions from SNP 55685 to 56286 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,761 DEBUG Processing 1045/1135 atomic regions from SNP 313272 to 313872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,900 DEBUG Processing 187/857 atomic regions from SNP 55986 to 56587 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,073 DEBUG Processing 1046/1135 atomic regions from SNP 313572 to 314172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,163 DEBUG Processing 188/857 atomic regions from SNP 56287 to 56888 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,396 DEBUG Processing 1047/1135 atomic regions from SNP 313872 to 314472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,400 DEBUG Processing 189/857 atomic regions from SNP 56588 to 57189 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,643 DEBUG Processing 190/857 atomic regions from SNP 56889 to 57490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,730 DEBUG Processing 1048/1135 atomic regions from SNP 314172 to 314772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,881 DEBUG Processing 191/857 atomic regions from SNP 57190 to 57791 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,058 DEBUG Processing 1049/1135 atomic regions from SNP 314472 to 315072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,126 DEBUG Processing 192/857 atomic regions from SNP 57491 to 58092 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,364 DEBUG Processing 193/857 atomic regions from SNP 57792 to 58393 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,398 DEBUG Processing 1050/1135 atomic regions from SNP 314772 to 315372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,596 DEBUG Processing 194/857 atomic regions from SNP 58093 to 58694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,714 DEBUG Processing 1051/1135 atomic regions from SNP 315072 to 315672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,829 DEBUG Processing 195/857 atomic regions from SNP 58394 to 58995 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,015 DEBUG Processing 1052/1135 atomic regions from SNP 315372 to 315972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,061 DEBUG Processing 196/857 atomic regions from SNP 58695 to 59296 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,309 DEBUG Processing 197/857 atomic regions from SNP 58996 to 59597 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,315 DEBUG Processing 1053/1135 atomic regions from SNP 315672 to 316272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,565 DEBUG Processing 198/857 atomic regions from SNP 59297 to 59898 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,628 DEBUG Processing 1054/1135 atomic regions from SNP 315972 to 316572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,805 DEBUG Processing 199/857 atomic regions from SNP 59598 to 60199 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,933 DEBUG Processing 1055/1135 atomic regions from SNP 316272 to 316872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,050 DEBUG Processing 200/857 atomic regions from SNP 59899 to 60500 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,252 DEBUG Processing 1056/1135 atomic regions from SNP 316572 to 317172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,315 DEBUG Processing 201/857 atomic regions from SNP 60200 to 60801 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,564 DEBUG Processing 1057/1135 atomic regions from SNP 316872 to 317472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,565 DEBUG Processing 202/857 atomic regions from SNP 60501 to 61102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,796 DEBUG Processing 203/857 atomic regions from SNP 60802 to 61403 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,850 DEBUG Processing 1058/1135 atomic regions from SNP 317172 to 317772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,016 DEBUG Processing 204/857 atomic regions from SNP 61103 to 61704 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,138 DEBUG Processing 1059/1135 atomic regions from SNP 317472 to 318072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,149 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:49:03,259 DEBUG Processing 205/857 atomic regions from SNP 61404 to 62005 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,433 DEBUG Processing 1060/1135 atomic regions from SNP 317772 to 318372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,523 DEBUG Processing 206/857 atomic regions from SNP 61705 to 62306 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,722 DEBUG Processing 1061/1135 atomic regions from SNP 318072 to 318672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,793 DEBUG Processing 207/857 atomic regions from SNP 62006 to 62607 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,017 DEBUG Processing 1062/1135 atomic regions from SNP 318372 to 318972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,032 DEBUG Processing 208/857 atomic regions from SNP 62307 to 62908 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,291 DEBUG Processing 209/857 atomic regions from SNP 62608 to 63209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,330 DEBUG Processing 1063/1135 atomic regions from SNP 318672 to 319272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,537 DEBUG Processing 210/857 atomic regions from SNP 62909 to 63510 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,619 DEBUG Processing 1064/1135 atomic regions from SNP 318972 to 319572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,757 DEBUG Processing 211/857 atomic regions from SNP 63210 to 63811 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,895 DEBUG Processing 1065/1135 atomic regions from SNP 319272 to 319872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,996 DEBUG Processing 212/857 atomic regions from SNP 63511 to 64112 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,179 DEBUG Processing 1066/1135 atomic regions from SNP 319572 to 320172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,247 DEBUG Processing 213/857 atomic regions from SNP 63812 to 64413 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,460 DEBUG Processing 1067/1135 atomic regions from SNP 319872 to 320472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,487 DEBUG Processing 214/857 atomic regions from SNP 64113 to 64714 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,706 DEBUG Processing 215/857 atomic regions from SNP 64414 to 65015 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,732 DEBUG Processing 1068/1135 atomic regions from SNP 320172 to 320772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,932 DEBUG Processing 216/857 atomic regions from SNP 64715 to 65316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,006 DEBUG Processing 1069/1135 atomic regions from SNP 320472 to 321072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,169 DEBUG Processing 217/857 atomic regions from SNP 65016 to 65617 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,282 DEBUG Processing 1070/1135 atomic regions from SNP 320772 to 321372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,399 DEBUG Processing 218/857 atomic regions from SNP 65317 to 65918 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,573 DEBUG Processing 1071/1135 atomic regions from SNP 321072 to 321672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,622 DEBUG Processing 219/857 atomic regions from SNP 65618 to 66219 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,841 DEBUG Processing 220/857 atomic regions from SNP 65919 to 66520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,874 DEBUG Processing 1072/1135 atomic regions from SNP 321372 to 321972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,069 DEBUG Processing 221/857 atomic regions from SNP 66220 to 66821 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,159 DEBUG Processing 1073/1135 atomic regions from SNP 321672 to 322272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,303 DEBUG Processing 222/857 atomic regions from SNP 66521 to 67122 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,449 DEBUG Processing 1074/1135 atomic regions from SNP 321972 to 322572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,533 DEBUG Processing 223/857 atomic regions from SNP 66822 to 67423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,758 DEBUG Processing 1075/1135 atomic regions from SNP 322272 to 322872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,771 DEBUG Processing 224/857 atomic regions from SNP 67123 to 67724 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,005 DEBUG Processing 225/857 atomic regions from SNP 67424 to 68025 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,070 DEBUG Processing 1076/1135 atomic regions from SNP 322572 to 323172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,248 DEBUG Processing 226/857 atomic regions from SNP 67725 to 68326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,377 DEBUG Processing 1077/1135 atomic regions from SNP 322872 to 323472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,489 DEBUG Processing 227/857 atomic regions from SNP 68026 to 68627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,679 DEBUG Processing 1078/1135 atomic regions from SNP 323172 to 323772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,720 DEBUG Processing 228/857 atomic regions from SNP 68327 to 68928 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,961 DEBUG Processing 229/857 atomic regions from SNP 68628 to 69229 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,972 DEBUG Processing 1079/1135 atomic regions from SNP 323472 to 324072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,052 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:49:09,054 DEBUG chr7: Signal quantile: 0.988. signal threshold: 13. Best RMSEA: 0.013 2025-01-31 09:49:09,204 DEBUG Processing 230/857 atomic regions from SNP 68929 to 69530 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,267 DEBUG Processing 1080/1135 atomic regions from SNP 323772 to 324372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,457 DEBUG Processing 231/857 atomic regions from SNP 69230 to 69831 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,556 DEBUG Processing 1081/1135 atomic regions from SNP 324072 to 324672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,711 DEBUG Processing 232/857 atomic regions from SNP 69531 to 70132 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,844 DEBUG Processing 1082/1135 atomic regions from SNP 324372 to 324972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,946 DEBUG Processing 233/857 atomic regions from SNP 69832 to 70433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,133 DEBUG Processing 1083/1135 atomic regions from SNP 324672 to 325272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,184 DEBUG Processing 234/857 atomic regions from SNP 70133 to 70733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,432 DEBUG Processing 1084/1135 atomic regions from SNP 324972 to 325572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,445 DEBUG Processing 235/857 atomic regions from SNP 70433 to 71033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,698 DEBUG Processing 236/857 atomic regions from SNP 70733 to 71333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,716 DEBUG Processing 1085/1135 atomic regions from SNP 325272 to 325872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,942 DEBUG Processing 237/857 atomic regions from SNP 71033 to 71633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,996 DEBUG Processing 1086/1135 atomic regions from SNP 325572 to 326172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,179 DEBUG Processing 238/857 atomic regions from SNP 71333 to 71933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,278 DEBUG Processing 1087/1135 atomic regions from SNP 325872 to 326472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,408 DEBUG Processing 239/857 atomic regions from SNP 71633 to 72233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,559 DEBUG Processing 1088/1135 atomic regions from SNP 326172 to 326772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,648 DEBUG Processing 240/857 atomic regions from SNP 71933 to 72533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,842 DEBUG Processing 1089/1135 atomic regions from SNP 326472 to 327072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,843 DEBUG chr7 total SNP count: 233059 2025-01-31 09:49:11,844 DEBUG chr7 length: 145441459 2025-01-31 09:49:11,844 DEBUG ----------------------------------------- 2025-01-31 09:49:11,844 INFO Processing SNPs in chr7 2025-01-31 09:49:11,899 DEBUG Processing 241/857 atomic regions from SNP 72233 to 72833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,122 DEBUG Processing 1090/1135 atomic regions from SNP 326772 to 327372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,140 DEBUG Processing 242/857 atomic regions from SNP 72533 to 73133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,225 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 20924), (20924, 20958), (20958, 233059)] 2025-01-31 09:49:12,333 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:12,381 DEBUG Processing 243/857 atomic regions from SNP 72833 to 73433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,425 DEBUG Processing 1091/1135 atomic regions from SNP 327072 to 327672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,605 DEBUG Processing 244/857 atomic regions from SNP 73133 to 73733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,698 DEBUG Processing 1092/1135 atomic regions from SNP 327372 to 327972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,833 DEBUG Processing 245/857 atomic regions from SNP 73433 to 74033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,970 DEBUG Processing 1093/1135 atomic regions from SNP 327672 to 328272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,081 DEBUG Processing 246/857 atomic regions from SNP 73733 to 74333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,244 DEBUG Processing 1094/1135 atomic regions from SNP 327972 to 328572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,318 DEBUG Processing 247/857 atomic regions from SNP 74033 to 74633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,445 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:49:13,447 DEBUG chr10: Signal quantile: 0.991. signal threshold: 12. Best RMSEA: 0.017 2025-01-31 09:49:13,523 DEBUG Processing 1095/1135 atomic regions from SNP 328272 to 328872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,558 DEBUG Processing 248/857 atomic regions from SNP 74333 to 74933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,788 DEBUG Processing 249/857 atomic regions from SNP 74633 to 75233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,801 DEBUG Processing 1096/1135 atomic regions from SNP 328572 to 329172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,016 DEBUG Processing 250/857 atomic regions from SNP 74933 to 75533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,076 DEBUG Processing 1097/1135 atomic regions from SNP 328872 to 329472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,249 DEBUG Processing 251/857 atomic regions from SNP 75233 to 75833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,346 DEBUG Processing 1098/1135 atomic regions from SNP 329172 to 329772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,477 DEBUG Processing 252/857 atomic regions from SNP 75533 to 76133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,625 DEBUG Processing 1099/1135 atomic regions from SNP 329472 to 330072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,649 DEBUG Subchromosome time: 362.65203333296813, subchromosome SNPs: 307674 2025-01-31 09:49:14,652 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:14,707 DEBUG Processing 253/857 atomic regions from SNP 75833 to 76433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,890 DEBUG Segmenting atomic regions: 2025-01-31 09:49:14,911 DEBUG Processing 1100/1135 atomic regions from SNP 329772 to 330372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,936 DEBUG Processing 254/857 atomic regions from SNP 76133 to 76733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,992 DEBUG Processing 1/68 atomic regions from SNP 0 to 604 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:15,162 DEBUG Processing 255/857 atomic regions from SNP 76433 to 77033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,194 DEBUG Processing 1101/1135 atomic regions from SNP 330072 to 330672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,207 DEBUG Processing 2/68 atomic regions from SNP 304 to 908 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:15,393 DEBUG Processing 256/857 atomic regions from SNP 76733 to 77333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,422 DEBUG Processing 3/68 atomic regions from SNP 608 to 1212 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:15,484 DEBUG Processing 1102/1135 atomic regions from SNP 330372 to 330972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,619 DEBUG Segmenting atomic regions: 2025-01-31 09:49:15,654 DEBUG Processing 257/857 atomic regions from SNP 77033 to 77633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,680 DEBUG Processing 4/68 atomic regions from SNP 912 to 1516 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:15,764 DEBUG Processing 1/25 atomic regions from SNP 0 to 603 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:15,787 DEBUG Processing 1103/1135 atomic regions from SNP 330672 to 331272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,836 DEBUG chr10 total SNP count: 225199 2025-01-31 09:49:15,836 DEBUG chr10 length: 130694993 2025-01-31 09:49:15,836 DEBUG ----------------------------------------- 2025-01-31 09:49:15,836 INFO Processing SNPs in chr10 2025-01-31 09:49:15,893 DEBUG Processing 258/857 atomic regions from SNP 77333 to 77933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,921 DEBUG Processing 5/68 atomic regions from SNP 1216 to 1820 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:16,029 DEBUG Processing 2/25 atomic regions from SNP 303 to 906 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:16,068 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 225199)] 2025-01-31 09:49:16,079 DEBUG Processing 1104/1135 atomic regions from SNP 330972 to 331572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,136 DEBUG Processing 259/857 atomic regions from SNP 77633 to 78233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,144 DEBUG Processing 6/68 atomic regions from SNP 1520 to 2124 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:16,225 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:16,294 DEBUG Processing 3/25 atomic regions from SNP 606 to 1209 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:16,359 DEBUG Processing 1105/1135 atomic regions from SNP 331272 to 331872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,381 DEBUG Processing 7/68 atomic regions from SNP 1824 to 2428 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:16,406 DEBUG Processing 260/857 atomic regions from SNP 77933 to 78533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,556 DEBUG Processing 4/25 atomic regions from SNP 909 to 1512 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:16,640 DEBUG Processing 8/68 atomic regions from SNP 2128 to 2732 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:16,645 DEBUG Processing 1106/1135 atomic regions from SNP 331572 to 332172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,663 DEBUG Processing 261/857 atomic regions from SNP 78233 to 78833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,822 DEBUG Processing 5/25 atomic regions from SNP 1212 to 1815 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:16,901 DEBUG Processing 9/68 atomic regions from SNP 2432 to 3036 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:16,902 DEBUG Processing 262/857 atomic regions from SNP 78533 to 79133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,935 DEBUG Processing 1107/1135 atomic regions from SNP 331872 to 332472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,073 DEBUG Processing 6/25 atomic regions from SNP 1515 to 2118 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:17,141 DEBUG Processing 263/857 atomic regions from SNP 78833 to 79433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,166 DEBUG Processing 10/68 atomic regions from SNP 2736 to 3340 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:17,219 DEBUG Processing 1108/1135 atomic regions from SNP 332172 to 332772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,326 DEBUG Processing 7/25 atomic regions from SNP 1818 to 2420 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:17,384 DEBUG Processing 264/857 atomic regions from SNP 79133 to 79733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,435 DEBUG Processing 11/68 atomic regions from SNP 3040 to 3644 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:17,510 DEBUG Processing 1109/1135 atomic regions from SNP 332472 to 333072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,590 DEBUG Processing 8/25 atomic regions from SNP 2120 to 2722 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:17,628 DEBUG Processing 265/857 atomic regions from SNP 79433 to 80033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,677 DEBUG Processing 12/68 atomic regions from SNP 3344 to 3948 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:17,824 DEBUG Processing 1110/1135 atomic regions from SNP 332772 to 333372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,862 DEBUG Processing 9/25 atomic regions from SNP 2422 to 3024 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:17,871 DEBUG Processing 266/857 atomic regions from SNP 79733 to 80333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,906 DEBUG Processing 13/68 atomic regions from SNP 3648 to 4252 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:18,112 DEBUG Processing 267/857 atomic regions from SNP 80033 to 80633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,127 DEBUG Processing 10/25 atomic regions from SNP 2724 to 3326 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:18,132 DEBUG Processing 1111/1135 atomic regions from SNP 333072 to 333672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,133 DEBUG Processing 14/68 atomic regions from SNP 3952 to 4556 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:18,381 DEBUG Processing 268/857 atomic regions from SNP 80333 to 80933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,381 DEBUG Processing 15/68 atomic regions from SNP 4256 to 4860 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:18,394 DEBUG Processing 11/25 atomic regions from SNP 3026 to 3628 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:18,447 DEBUG Processing 1112/1135 atomic regions from SNP 333372 to 333972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,487 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:49:18,488 DEBUG chr8: Signal quantile: 0.992. signal threshold: 14. Best RMSEA: 0.018 2025-01-31 09:49:18,616 DEBUG Processing 16/68 atomic regions from SNP 4560 to 5164 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:18,651 DEBUG Processing 269/857 atomic regions from SNP 80633 to 81233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,661 DEBUG Processing 12/25 atomic regions from SNP 3328 to 3930 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:18,761 DEBUG Processing 1113/1135 atomic regions from SNP 333672 to 334272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,879 DEBUG Processing 17/68 atomic regions from SNP 4864 to 5468 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:18,895 DEBUG Processing 270/857 atomic regions from SNP 80933 to 81533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,942 DEBUG Processing 13/25 atomic regions from SNP 3630 to 4232 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:19,077 DEBUG Processing 1114/1135 atomic regions from SNP 333972 to 334572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,132 DEBUG Processing 18/68 atomic regions from SNP 5168 to 5772 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:19,138 DEBUG Processing 271/857 atomic regions from SNP 81233 to 81833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,236 DEBUG Processing 14/25 atomic regions from SNP 3932 to 4534 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:19,374 DEBUG Processing 19/68 atomic regions from SNP 5472 to 6076 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:19,379 DEBUG Processing 1115/1135 atomic regions from SNP 334272 to 334872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,381 DEBUG Processing 272/857 atomic regions from SNP 81533 to 82133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,535 DEBUG Processing 15/25 atomic regions from SNP 4234 to 4836 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:19,620 DEBUG Processing 273/857 atomic regions from SNP 81833 to 82433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,623 DEBUG Processing 20/68 atomic regions from SNP 5776 to 6379 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:19,705 DEBUG Processing 1116/1135 atomic regions from SNP 334572 to 335172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,830 DEBUG Processing 16/25 atomic regions from SNP 4536 to 5138 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:19,844 DEBUG Processing 21/68 atomic regions from SNP 6079 to 6682 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:19,851 DEBUG Processing 274/857 atomic regions from SNP 82133 to 82733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,024 DEBUG Processing 1117/1135 atomic regions from SNP 334872 to 335472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,076 DEBUG Processing 22/68 atomic regions from SNP 6382 to 6985 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,091 DEBUG Processing 275/857 atomic regions from SNP 82433 to 83033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,123 DEBUG Processing 17/25 atomic regions from SNP 4838 to 5440 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:20,305 DEBUG Processing 23/68 atomic regions from SNP 6685 to 7288 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,326 DEBUG Processing 1118/1135 atomic regions from SNP 335172 to 335772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,342 DEBUG Processing 276/857 atomic regions from SNP 82733 to 83333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,425 DEBUG Processing 18/25 atomic regions from SNP 5140 to 5742 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:20,533 DEBUG Processing 24/68 atomic regions from SNP 6988 to 7591 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,584 DEBUG Processing 277/857 atomic regions from SNP 83033 to 83633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,613 DEBUG Processing 1119/1135 atomic regions from SNP 335472 to 336072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,718 DEBUG Processing 19/25 atomic regions from SNP 5442 to 6044 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:20,756 DEBUG Processing 25/68 atomic regions from SNP 7291 to 7894 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,818 DEBUG Processing 278/857 atomic regions from SNP 83333 to 83933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,891 DEBUG Processing 1120/1135 atomic regions from SNP 335772 to 336372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,935 DEBUG chr8 total SNP count: 220890 2025-01-31 09:49:20,935 DEBUG chr8 length: 129401213 2025-01-31 09:49:20,935 DEBUG ----------------------------------------- 2025-01-31 09:49:20,935 INFO Processing SNPs in chr8 2025-01-31 09:49:20,988 DEBUG Processing 26/68 atomic regions from SNP 7594 to 8197 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,005 DEBUG Processing 20/25 atomic regions from SNP 5744 to 6346 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:21,055 DEBUG Processing 279/857 atomic regions from SNP 83633 to 84233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,157 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 220890)] 2025-01-31 09:49:21,173 DEBUG Processing 1121/1135 atomic regions from SNP 336072 to 336672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,219 DEBUG Processing 27/68 atomic regions from SNP 7897 to 8500 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,291 DEBUG Processing 280/857 atomic regions from SNP 83933 to 84533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,293 DEBUG Processing 21/25 atomic regions from SNP 6046 to 6648 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:21,309 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:21,445 DEBUG Processing 1122/1135 atomic regions from SNP 336372 to 336972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,449 DEBUG Processing 28/68 atomic regions from SNP 8200 to 8803 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,527 DEBUG Processing 281/857 atomic regions from SNP 84233 to 84833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,581 DEBUG Processing 22/25 atomic regions from SNP 6348 to 6950 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:21,675 DEBUG Processing 29/68 atomic regions from SNP 8503 to 9106 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,735 DEBUG Processing 1123/1135 atomic regions from SNP 336672 to 337272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,793 DEBUG Processing 282/857 atomic regions from SNP 84533 to 85133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,872 DEBUG Processing 23/25 atomic regions from SNP 6650 to 7252 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:21,906 DEBUG Processing 30/68 atomic regions from SNP 8806 to 9409 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,024 DEBUG Processing 1124/1135 atomic regions from SNP 336972 to 337572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,032 DEBUG Processing 283/857 atomic regions from SNP 84833 to 85433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,127 DEBUG Processing 31/68 atomic regions from SNP 9109 to 9712 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,163 DEBUG Processing 24/25 atomic regions from SNP 6952 to 7554 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:22,260 DEBUG Processing 284/857 atomic regions from SNP 85133 to 85733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,303 DEBUG Processing 1125/1135 atomic regions from SNP 337272 to 337872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,348 DEBUG Processing 32/68 atomic regions from SNP 9412 to 10015 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,456 DEBUG Processing 25/25 atomic regions from SNP 7254 to 7856 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:22,502 DEBUG Processing 285/857 atomic regions from SNP 85433 to 86033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,570 DEBUG Processing 33/68 atomic regions from SNP 9715 to 10318 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,592 DEBUG Unique SNPs positions in subchromosome 2: 7857 2025-01-31 09:49:22,603 DEBUG Subchromosome time: 7.951046632020734, subchromosome SNPs: 7857 2025-01-31 09:49:22,603 DEBUG Estimated BADs: [1.58, 0.79, 1.58, 4.75, 0.53, 3.17, 0.32, 0.79, 3.17, 1.58, 0.40, 0.79, 6.33, 0.32, 3.17, 0.32, 1.58, 0.79, 3.17, 0.79, 1.58, 3.17, 1.58, 0.79, 1.58, 0.79, 3.17, 1.58, 3.17, 6.33, 1.58, 1.58, 6.33] SNP counts: [8220, 18247, 11917, 21603, 1174, 4276, 7120, 46465, 7163, 13584, 3276, 2688, 1221, 7498, 9012, 9290, 12921, 18659, 7132, 2396, 6061, 7540, 13424, 9496, 9239, 3374, 13879, 8710, 6944, 2041, 13104, 3689, 4168] SNP IDs counts: [8220, 18247, 11917, 21603, 1174, 4276, 7120, 46465, 7163, 13584, 3276, 2688, 1221, 7498, 9012, 9290, 12921, 18659, 7132, 2396, 6061, 7540, 13424, 9496, 9239, 3374, 13879, 8710, 6944, 2041, 13104, 3689, 4168] Critical gap: 725868bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.55Mbp, 18.02Mbp, 24.92Mbp, 36.29Mbp, 37.04Mbp, 39.38Mbp, 43.54Mbp, 69.80Mbp, 73.57Mbp, 80.95Mbp, 82.94Mbp, 84.65Mbp, 85.31Mbp, 89.89Mbp, 94.92Mbp, 100.91Mbp, 107.97Mbp, 118.60Mbp, 122.39Mbp, 123.80Mbp, 127.13Mbp, 131.14Mbp, 138.53Mbp, 143.87Mbp, 148.90Mbp, 150.90Mbp, 158.58Mbp, 163.30Mbp, 166.99Mbp, 168.08Mbp, 175.18Mbp[1.52Mbp], 179.79Mbp, 182.11Mbp] 2025-01-31 09:49:22,603 DEBUG chr2 time: 7.951632239972241 s 2025-01-31 09:49:22,603 DEBUG Processing 1126/1135 atomic regions from SNP 337572 to 338172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,739 DEBUG Processing 286/857 atomic regions from SNP 85733 to 86333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,787 DEBUG chr2: Fitting background model for 33 segments 2025-01-31 09:49:22,797 DEBUG Processing 34/68 atomic regions from SNP 10018 to 10621 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,916 DEBUG Processing 1127/1135 atomic regions from SNP 337872 to 338472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,977 DEBUG Processing 287/857 atomic regions from SNP 86033 to 86633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,024 DEBUG Processing 35/68 atomic regions from SNP 10321 to 10924 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:23,200 DEBUG Processing 1128/1135 atomic regions from SNP 338172 to 338772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,215 DEBUG Processing 288/857 atomic regions from SNP 86333 to 86933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,284 DEBUG Processing 36/68 atomic regions from SNP 10624 to 11227 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:23,457 DEBUG Processing 289/857 atomic regions from SNP 86633 to 87233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,486 DEBUG Processing 1129/1135 atomic regions from SNP 338472 to 339072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,535 DEBUG Processing 37/68 atomic regions from SNP 10927 to 11530 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:23,694 DEBUG Processing 290/857 atomic regions from SNP 86933 to 87533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,767 DEBUG Processing 38/68 atomic regions from SNP 11230 to 11833 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:23,778 DEBUG Processing 1130/1135 atomic regions from SNP 338772 to 339372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,927 DEBUG Processing 291/857 atomic regions from SNP 87233 to 87833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,002 DEBUG Processing 39/68 atomic regions from SNP 11533 to 12136 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,079 DEBUG Processing 1131/1135 atomic regions from SNP 339072 to 339672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,154 DEBUG Processing 292/857 atomic regions from SNP 87533 to 88133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,228 DEBUG Processing 40/68 atomic regions from SNP 11836 to 12439 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,380 DEBUG Processing 1132/1135 atomic regions from SNP 339372 to 339972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,386 DEBUG Processing 293/857 atomic regions from SNP 87833 to 88433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,452 DEBUG Processing 41/68 atomic regions from SNP 12139 to 12742 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,622 DEBUG Processing 294/857 atomic regions from SNP 88133 to 88733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,677 DEBUG Processing 42/68 atomic regions from SNP 12442 to 13045 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,685 DEBUG Processing 1133/1135 atomic regions from SNP 339672 to 340272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,854 DEBUG Processing 295/857 atomic regions from SNP 88433 to 89033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,905 DEBUG Processing 43/68 atomic regions from SNP 12745 to 13348 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,977 DEBUG Processing 1134/1135 atomic regions from SNP 339972 to 340572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,085 DEBUG Processing 296/857 atomic regions from SNP 88733 to 89333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,127 DEBUG Processing 44/68 atomic regions from SNP 13048 to 13651 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:25,274 DEBUG Processing 1135/1135 atomic regions from SNP 340272 to 340872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,318 DEBUG Processing 297/857 atomic regions from SNP 89033 to 89633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,348 DEBUG Processing 45/68 atomic regions from SNP 13351 to 13954 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:25,421 DEBUG Unique SNPs positions in subchromosome 1: 340873 2025-01-31 09:49:25,556 DEBUG Processing 298/857 atomic regions from SNP 89333 to 89933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,577 DEBUG Processing 46/68 atomic regions from SNP 13654 to 14257 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:25,800 DEBUG Processing 299/857 atomic regions from SNP 89633 to 90233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,813 DEBUG Processing 47/68 atomic regions from SNP 13957 to 14560 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:26,033 DEBUG Processing 300/857 atomic regions from SNP 89933 to 90533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,071 DEBUG Processing 48/68 atomic regions from SNP 14260 to 14863 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:26,271 DEBUG Processing 301/857 atomic regions from SNP 90233 to 90833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,320 DEBUG Processing 49/68 atomic regions from SNP 14563 to 15166 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:26,525 DEBUG Processing 302/857 atomic regions from SNP 90533 to 91133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,571 DEBUG Processing 50/68 atomic regions from SNP 14866 to 15469 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:26,787 DEBUG Processing 303/857 atomic regions from SNP 90833 to 91433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,833 DEBUG Processing 51/68 atomic regions from SNP 15169 to 15772 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:27,040 DEBUG Processing 304/857 atomic regions from SNP 91133 to 91733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,077 DEBUG Processing 52/68 atomic regions from SNP 15472 to 16075 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:27,280 DEBUG Processing 305/857 atomic regions from SNP 91433 to 92033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,324 DEBUG Processing 53/68 atomic regions from SNP 15775 to 16378 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:27,517 DEBUG Processing 306/857 atomic regions from SNP 91733 to 92333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,585 DEBUG Processing 54/68 atomic regions from SNP 16078 to 16681 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:27,745 DEBUG Processing 307/857 atomic regions from SNP 92033 to 92633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,833 DEBUG Processing 55/68 atomic regions from SNP 16381 to 16984 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:27,978 DEBUG Processing 308/857 atomic regions from SNP 92333 to 92933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,064 DEBUG Processing 56/68 atomic regions from SNP 16684 to 17287 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:28,214 DEBUG Processing 309/857 atomic regions from SNP 92633 to 93233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,292 DEBUG Processing 57/68 atomic regions from SNP 16987 to 17590 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:28,451 DEBUG Processing 310/857 atomic regions from SNP 92933 to 93533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,518 DEBUG Processing 58/68 atomic regions from SNP 17290 to 17893 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:28,695 DEBUG Processing 311/857 atomic regions from SNP 93233 to 93833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,747 DEBUG Processing 59/68 atomic regions from SNP 17593 to 18196 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:28,939 DEBUG Processing 312/857 atomic regions from SNP 93533 to 94133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,977 DEBUG Processing 60/68 atomic regions from SNP 17896 to 18499 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:29,185 DEBUG Processing 313/857 atomic regions from SNP 93833 to 94433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,217 DEBUG Processing 61/68 atomic regions from SNP 18199 to 18802 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:29,421 DEBUG Processing 314/857 atomic regions from SNP 94133 to 94733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,449 DEBUG Processing 62/68 atomic regions from SNP 18502 to 19105 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:29,674 DEBUG Processing 315/857 atomic regions from SNP 94433 to 95033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,698 DEBUG Processing 63/68 atomic regions from SNP 18805 to 19408 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:29,919 DEBUG Processing 316/857 atomic regions from SNP 94733 to 95333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,960 DEBUG Processing 64/68 atomic regions from SNP 19108 to 19711 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:30,162 DEBUG Processing 317/857 atomic regions from SNP 95033 to 95633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,225 DEBUG Processing 65/68 atomic regions from SNP 19411 to 20014 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:30,403 DEBUG Processing 318/857 atomic regions from SNP 95333 to 95933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,486 DEBUG Processing 66/68 atomic regions from SNP 19714 to 20317 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:30,651 DEBUG Processing 319/857 atomic regions from SNP 95633 to 96233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,762 DEBUG Processing 67/68 atomic regions from SNP 20017 to 20620 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:30,914 DEBUG Processing 320/857 atomic regions from SNP 95933 to 96533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,032 DEBUG Processing 68/68 atomic regions from SNP 20320 to 20923 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:31,157 DEBUG Processing 321/857 atomic regions from SNP 96233 to 96833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,164 DEBUG Unique SNPs positions in subchromosome 1: 20924 2025-01-31 09:49:31,239 DEBUG Subchromosome time: 18.905438939924352, subchromosome SNPs: 20924 2025-01-31 09:49:31,299 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:31,397 DEBUG Processing 322/857 atomic regions from SNP 96533 to 97133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,633 DEBUG Processing 323/857 atomic regions from SNP 96833 to 97433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,878 DEBUG Processing 324/857 atomic regions from SNP 97133 to 97733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,123 DEBUG Processing 325/857 atomic regions from SNP 97433 to 98033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,362 DEBUG Processing 326/857 atomic regions from SNP 97733 to 98333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,601 DEBUG Processing 327/857 atomic regions from SNP 98033 to 98633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,837 DEBUG Processing 328/857 atomic regions from SNP 98333 to 98933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,078 DEBUG Processing 329/857 atomic regions from SNP 98633 to 99233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,317 DEBUG Processing 330/857 atomic regions from SNP 98933 to 99533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,557 DEBUG Processing 331/857 atomic regions from SNP 99233 to 99833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,796 DEBUG Processing 332/857 atomic regions from SNP 99533 to 100133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,034 DEBUG Processing 333/857 atomic regions from SNP 99833 to 100433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,278 DEBUG Processing 334/857 atomic regions from SNP 100133 to 100733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,516 DEBUG Processing 335/857 atomic regions from SNP 100433 to 101033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,749 DEBUG Processing 336/857 atomic regions from SNP 100733 to 101333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,983 DEBUG Processing 337/857 atomic regions from SNP 101033 to 101633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,221 DEBUG Processing 338/857 atomic regions from SNP 101333 to 101933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,454 DEBUG Processing 339/857 atomic regions from SNP 101633 to 102233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,685 DEBUG Processing 340/857 atomic regions from SNP 101933 to 102533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,916 DEBUG Processing 341/857 atomic regions from SNP 102233 to 102833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,150 DEBUG Processing 342/857 atomic regions from SNP 102533 to 103133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,382 DEBUG Processing 343/857 atomic regions from SNP 102833 to 103433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,609 DEBUG Processing 344/857 atomic regions from SNP 103133 to 103733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,833 DEBUG Processing 345/857 atomic regions from SNP 103433 to 104033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,064 DEBUG Processing 346/857 atomic regions from SNP 103733 to 104333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,299 DEBUG Processing 347/857 atomic regions from SNP 104033 to 104633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,540 DEBUG Processing 348/857 atomic regions from SNP 104333 to 104933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,770 DEBUG Processing 349/857 atomic regions from SNP 104633 to 105233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,998 DEBUG Processing 350/857 atomic regions from SNP 104933 to 105533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,231 DEBUG Processing 351/857 atomic regions from SNP 105233 to 105833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,468 DEBUG Processing 352/857 atomic regions from SNP 105533 to 106133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,702 DEBUG Processing 353/857 atomic regions from SNP 105833 to 106433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,933 DEBUG Processing 354/857 atomic regions from SNP 106133 to 106733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,161 DEBUG Processing 355/857 atomic regions from SNP 106433 to 107033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,392 DEBUG Processing 356/857 atomic regions from SNP 106733 to 107333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,618 DEBUG Processing 357/857 atomic regions from SNP 107033 to 107633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,847 DEBUG Processing 358/857 atomic regions from SNP 107333 to 107933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,078 DEBUG Processing 359/857 atomic regions from SNP 107633 to 108233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,308 DEBUG Processing 360/857 atomic regions from SNP 107933 to 108533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,540 DEBUG Processing 361/857 atomic regions from SNP 108233 to 108833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,776 DEBUG Processing 362/857 atomic regions from SNP 108533 to 109133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,003 DEBUG Processing 363/857 atomic regions from SNP 108833 to 109433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,235 DEBUG Processing 364/857 atomic regions from SNP 109133 to 109733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,474 DEBUG Processing 365/857 atomic regions from SNP 109433 to 110033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,711 DEBUG Processing 366/857 atomic regions from SNP 109733 to 110333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,946 DEBUG Processing 367/857 atomic regions from SNP 110033 to 110633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,181 DEBUG Processing 368/857 atomic regions from SNP 110333 to 110933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,416 DEBUG Processing 369/857 atomic regions from SNP 110633 to 111233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,657 DEBUG Processing 370/857 atomic regions from SNP 110933 to 111533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,898 DEBUG Processing 371/857 atomic regions from SNP 111233 to 111833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,143 DEBUG Processing 372/857 atomic regions from SNP 111533 to 112133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,414 DEBUG Processing 373/857 atomic regions from SNP 111833 to 112433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,677 DEBUG Processing 374/857 atomic regions from SNP 112133 to 112733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,864 DEBUG Segmenting atomic regions: 2025-01-31 09:49:43,916 DEBUG Processing 375/857 atomic regions from SNP 112433 to 113033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,966 DEBUG Processing 1/749 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,154 DEBUG Processing 376/857 atomic regions from SNP 112733 to 113333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,183 DEBUG Processing 2/749 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,388 DEBUG Processing 377/857 atomic regions from SNP 113033 to 113633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,401 DEBUG Processing 3/749 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,625 DEBUG Processing 4/749 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,627 DEBUG Processing 378/857 atomic regions from SNP 113333 to 113933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,850 DEBUG Processing 5/749 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,865 DEBUG Processing 379/857 atomic regions from SNP 113633 to 114233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,065 DEBUG Processing 6/749 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,111 DEBUG Processing 380/857 atomic regions from SNP 113933 to 114533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,274 DEBUG Processing 7/749 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,342 DEBUG Processing 381/857 atomic regions from SNP 114233 to 114833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,511 DEBUG Processing 8/749 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,584 DEBUG Processing 382/857 atomic regions from SNP 114533 to 115133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,783 DEBUG Processing 9/749 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,826 DEBUG Processing 383/857 atomic regions from SNP 114833 to 115433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,994 DEBUG Processing 10/749 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,065 DEBUG Processing 384/857 atomic regions from SNP 115133 to 115733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,205 DEBUG Processing 11/749 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,297 DEBUG Processing 385/857 atomic regions from SNP 115433 to 116033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,419 DEBUG Processing 12/749 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,520 DEBUG Processing 386/857 atomic regions from SNP 115733 to 116333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,637 DEBUG Processing 13/749 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,747 DEBUG Processing 387/857 atomic regions from SNP 116033 to 116633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,854 DEBUG Processing 14/749 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,986 DEBUG Processing 388/857 atomic regions from SNP 116333 to 116933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,064 DEBUG Processing 15/749 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,222 DEBUG Processing 389/857 atomic regions from SNP 116633 to 117233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,281 DEBUG Processing 16/749 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,462 DEBUG Processing 390/857 atomic regions from SNP 116933 to 117533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,527 DEBUG Processing 17/749 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,695 DEBUG Processing 391/857 atomic regions from SNP 117233 to 117833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,749 DEBUG Processing 18/749 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,970 DEBUG Processing 19/749 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,973 DEBUG Processing 392/857 atomic regions from SNP 117533 to 118133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,203 DEBUG Processing 20/749 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,236 DEBUG Processing 393/857 atomic regions from SNP 117833 to 118433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,425 DEBUG Processing 21/749 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,450 DEBUG Segmenting atomic regions: 2025-01-31 09:49:48,478 DEBUG Processing 394/857 atomic regions from SNP 118133 to 118733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,547 DEBUG Processing 1/735 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,642 DEBUG Processing 22/749 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,715 DEBUG Processing 395/857 atomic regions from SNP 118433 to 119033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,774 DEBUG Processing 2/735 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,862 DEBUG Processing 23/749 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,986 DEBUG Processing 396/857 atomic regions from SNP 118733 to 119333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,017 DEBUG Processing 3/735 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,076 DEBUG Processing 24/749 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,254 DEBUG Processing 397/857 atomic regions from SNP 119033 to 119633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,273 DEBUG Processing 4/735 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,295 DEBUG Processing 25/749 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,508 DEBUG Processing 5/735 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,522 DEBUG Processing 26/749 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,526 DEBUG Processing 398/857 atomic regions from SNP 119333 to 119933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,738 DEBUG Processing 6/735 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,763 DEBUG Processing 27/749 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,789 DEBUG Processing 399/857 atomic regions from SNP 119633 to 120233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,984 DEBUG Processing 28/749 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,993 DEBUG Processing 7/735 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,050 DEBUG Processing 400/857 atomic regions from SNP 119933 to 120533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,206 DEBUG Processing 29/749 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,248 DEBUG Processing 8/735 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,318 DEBUG Processing 401/857 atomic regions from SNP 120233 to 120833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,428 DEBUG Processing 30/749 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,471 DEBUG Processing 9/735 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,591 DEBUG Processing 402/857 atomic regions from SNP 120533 to 121133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,646 DEBUG Processing 31/749 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,697 DEBUG Processing 10/735 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,866 DEBUG Processing 32/749 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,877 DEBUG Processing 403/857 atomic regions from SNP 120833 to 121433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,928 DEBUG Processing 11/735 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,087 DEBUG Processing 33/749 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,142 DEBUG Processing 404/857 atomic regions from SNP 121133 to 121733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,160 DEBUG Processing 12/735 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,307 DEBUG Processing 34/749 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,389 DEBUG Processing 405/857 atomic regions from SNP 121433 to 122033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,392 DEBUG Processing 13/735 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,528 DEBUG Processing 35/749 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,630 DEBUG Processing 14/735 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,632 DEBUG Processing 406/857 atomic regions from SNP 121733 to 122333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,742 DEBUG Processing 36/749 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,857 DEBUG Processing 15/735 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,880 DEBUG Processing 407/857 atomic regions from SNP 122033 to 122633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,959 DEBUG Processing 37/749 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,088 DEBUG Processing 16/735 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,125 DEBUG Processing 408/857 atomic regions from SNP 122333 to 122933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,182 DEBUG Processing 38/749 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,317 DEBUG Processing 17/735 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,371 DEBUG Processing 409/857 atomic regions from SNP 122633 to 123233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,409 DEBUG Processing 39/749 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,538 DEBUG Processing 18/735 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,615 DEBUG Processing 410/857 atomic regions from SNP 122933 to 123533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,633 DEBUG Processing 40/749 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,762 DEBUG Processing 19/735 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,851 DEBUG Processing 411/857 atomic regions from SNP 123233 to 123833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,851 DEBUG Processing 41/749 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,991 DEBUG Processing 20/735 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,072 DEBUG Processing 42/749 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,090 DEBUG Processing 412/857 atomic regions from SNP 123533 to 124133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,229 DEBUG Processing 21/735 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,300 DEBUG Processing 43/749 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,336 DEBUG Processing 413/857 atomic regions from SNP 123833 to 124433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,465 DEBUG Processing 22/735 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,532 DEBUG Processing 44/749 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,583 DEBUG Processing 414/857 atomic regions from SNP 124133 to 124733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,693 DEBUG Processing 23/735 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,745 DEBUG Processing 45/749 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,818 DEBUG Processing 415/857 atomic regions from SNP 124433 to 125033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,920 DEBUG Processing 24/735 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,959 DEBUG Processing 46/749 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,054 DEBUG Processing 416/857 atomic regions from SNP 124733 to 125333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,147 DEBUG Processing 25/735 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,178 DEBUG Processing 47/749 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,289 DEBUG Processing 417/857 atomic regions from SNP 125033 to 125633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,362 DEBUG Processing 26/735 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,393 DEBUG Processing 48/749 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,529 DEBUG Processing 418/857 atomic regions from SNP 125333 to 125933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,578 DEBUG Processing 27/735 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,612 DEBUG Processing 49/749 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,774 DEBUG Processing 419/857 atomic regions from SNP 125633 to 126233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,803 DEBUG Processing 28/735 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,832 DEBUG Processing 50/749 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,013 DEBUG Processing 420/857 atomic regions from SNP 125933 to 126533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,031 DEBUG Processing 29/735 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,059 DEBUG Processing 51/749 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,251 DEBUG Processing 421/857 atomic regions from SNP 126233 to 126833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,256 DEBUG Processing 30/735 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,290 DEBUG Processing 52/749 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,477 DEBUG Processing 31/735 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,489 DEBUG Processing 422/857 atomic regions from SNP 126533 to 127133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,515 DEBUG Processing 53/749 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,704 DEBUG Processing 32/735 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,735 DEBUG Processing 423/857 atomic regions from SNP 126833 to 127433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,738 DEBUG Processing 54/749 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,933 DEBUG Processing 33/735 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,957 DEBUG Processing 55/749 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,985 DEBUG Processing 424/857 atomic regions from SNP 127133 to 127733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,155 DEBUG Processing 34/735 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,176 DEBUG Processing 56/749 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,231 DEBUG Processing 425/857 atomic regions from SNP 127433 to 128033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,378 DEBUG Processing 35/735 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,398 DEBUG Processing 57/749 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,483 DEBUG Processing 426/857 atomic regions from SNP 127733 to 128333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,607 DEBUG Processing 36/735 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,642 DEBUG Processing 58/749 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,719 DEBUG Processing 427/857 atomic regions from SNP 128033 to 128633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,825 DEBUG Processing 37/735 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,858 DEBUG Processing 59/749 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,953 DEBUG Processing 428/857 atomic regions from SNP 128333 to 128933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,027 DEBUG Subchromosome time: 403.5259082260309, subchromosome SNPs: 340873 2025-01-31 09:49:57,027 DEBUG Estimated BADs: [0.53, 3.19, 0.80, 3.19, 1.60, 14.36, 0.80, 1.60, 3.19, 0.80, 15.96, 1.60, 7.98, 1.60, 3.19, 15.96, 3.19, 9.57, 0.80, 1.60, 0.53, 3.19, 1.60, 4.79, 1.60, 0.53, 1.60, 0.40, 1.60, 3.19, 1.60, 6.38, 1.60, 9.57, 1.60, 4.79, 1.60, 15.96, 3.19, 15.96, 1.60, 6.38, 3.19] SNP counts: [10893, 637, 40578, 11063, 8744, 98, 13353, 19165, 4647, 12518, 169, 3538, 1968, 17019, 1878, 395, 13231, 432, 20348, 3690, 17151, 3262, 19255, 10740, 5748, 6796, 1228, 8122, 10489, 11416, 7121, 1717, 2074, 342, 6288, 2662, 10522, 177, 12965, 182, 9955, 2093, 6204] SNP IDs counts: [10893, 637, 40578, 11063, 8744, 98, 13353, 19165, 4647, 12518, 169, 3538, 1968, 17019, 1878, 395, 13231, 432, 20348, 3690, 17151, 3262, 19255, 10740, 5748, 6796, 1228, 8122, 10489, 11416, 7121, 1717, 2074, 342, 6288, 2662, 10522, 177, 12965, 182, 9955, 2093, 6204] Critical gap: 757187bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 9.54Mbp, 9.88Mbp, 33.45Mbp, 39.39Mbp, 44.10Mbp, 44.15Mbp, 52.10Mbp, 62.70Mbp, 65.21Mbp, 72.23Mbp, 72.31Mbp, 74.24Mbp, 75.34Mbp, 84.84Mbp, 86.34Mbp, 86.55Mbp, 93.60Mbp, 93.83Mbp, 105.96Mbp, 108.06Mbp, 118.31Mbp, 120.02Mbp, 130.72Mbp, 136.36Mbp, 139.52Mbp, 143.69Mbp, 144.42Mbp, 149.25Mbp, 155.00Mbp, 161.16Mbp, 165.08Mbp, 166.01Mbp, 167.22Mbp, 167.39Mbp, 170.83Mbp, 172.29Mbp, 178.30Mbp, 178.40Mbp, 185.43Mbp, 185.52Mbp, 190.83Mbp, 191.94Mbp, 195.47Mbp] 2025-01-31 09:49:57,027 DEBUG chr1 time: 403.526567439083 s 2025-01-31 09:49:57,046 DEBUG Processing 38/735 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,076 DEBUG Processing 60/749 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,193 DEBUG Processing 429/857 atomic regions from SNP 128633 to 129233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,243 DEBUG chr1: Fitting background model for 43 segments 2025-01-31 09:49:57,274 DEBUG Processing 39/735 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,311 DEBUG Processing 61/749 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,353 DEBUG Segmenting atomic regions: 2025-01-31 09:49:57,430 DEBUG Processing 430/857 atomic regions from SNP 128933 to 129533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,456 DEBUG Processing 1/706 atomic regions from SNP 0 to 600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,502 DEBUG Processing 40/735 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,540 DEBUG Processing 62/749 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,673 DEBUG Processing 431/857 atomic regions from SNP 129233 to 129833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,690 DEBUG Processing 2/706 atomic regions from SNP 300 to 900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,733 DEBUG Processing 41/735 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,771 DEBUG Processing 63/749 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,929 DEBUG Processing 3/706 atomic regions from SNP 600 to 1200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,932 DEBUG Processing 432/857 atomic regions from SNP 129533 to 130133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,984 DEBUG Processing 42/735 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,041 DEBUG Processing 64/749 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,169 DEBUG Processing 4/706 atomic regions from SNP 900 to 1500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,188 DEBUG Processing 433/857 atomic regions from SNP 129833 to 130433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,217 DEBUG Processing 43/735 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,289 DEBUG Processing 65/749 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,413 DEBUG Processing 5/706 atomic regions from SNP 1200 to 1800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,443 DEBUG Processing 434/857 atomic regions from SNP 130133 to 130733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,454 DEBUG Processing 44/735 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,518 DEBUG Processing 66/749 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,681 DEBUG Processing 6/706 atomic regions from SNP 1500 to 2100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,698 DEBUG Processing 45/735 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,707 DEBUG Processing 435/857 atomic regions from SNP 130433 to 131033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,743 DEBUG Processing 67/749 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,945 DEBUG Processing 46/735 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,955 DEBUG Processing 7/706 atomic regions from SNP 1800 to 2400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,965 DEBUG Processing 436/857 atomic regions from SNP 130733 to 131333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,969 DEBUG Processing 68/749 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,202 DEBUG Processing 47/735 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,207 DEBUG Processing 69/749 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,229 DEBUG Processing 8/706 atomic regions from SNP 2100 to 2700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,237 DEBUG Processing 437/857 atomic regions from SNP 131033 to 131633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,434 DEBUG Processing 48/735 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,440 DEBUG Processing 70/749 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,480 DEBUG Processing 9/706 atomic regions from SNP 2400 to 3000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,483 DEBUG Processing 438/857 atomic regions from SNP 131333 to 131933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,673 DEBUG Processing 71/749 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,677 DEBUG Processing 49/735 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,726 DEBUG Processing 439/857 atomic regions from SNP 131633 to 132233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,750 DEBUG Processing 10/706 atomic regions from SNP 2700 to 3300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,913 DEBUG Processing 72/749 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,939 DEBUG Processing 50/735 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,978 DEBUG Processing 440/857 atomic regions from SNP 131933 to 132533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,013 DEBUG Processing 11/706 atomic regions from SNP 3000 to 3600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,155 DEBUG Processing 73/749 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,193 DEBUG Processing 51/735 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,224 DEBUG Processing 441/857 atomic regions from SNP 132233 to 132833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,281 DEBUG Processing 12/706 atomic regions from SNP 3300 to 3900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,390 DEBUG Processing 74/749 atomic regions from SNP 21973 to 22574 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,415 DEBUG Processing 52/735 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,462 DEBUG Processing 442/857 atomic regions from SNP 132533 to 133133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,533 DEBUG Processing 13/706 atomic regions from SNP 3600 to 4200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,638 DEBUG Processing 75/749 atomic regions from SNP 22274 to 22875 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,646 DEBUG Processing 53/735 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,706 DEBUG Processing 443/857 atomic regions from SNP 132833 to 133433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,790 DEBUG Processing 14/706 atomic regions from SNP 3900 to 4500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,885 DEBUG Processing 54/735 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,894 DEBUG Processing 76/749 atomic regions from SNP 22575 to 23176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,950 DEBUG Processing 444/857 atomic regions from SNP 133133 to 133733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,040 DEBUG Processing 15/706 atomic regions from SNP 4200 to 4800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,117 DEBUG Processing 55/735 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,141 DEBUG Processing 77/749 atomic regions from SNP 22876 to 23477 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,197 DEBUG Processing 445/857 atomic regions from SNP 133433 to 134033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,263 DEBUG Processing 16/706 atomic regions from SNP 4500 to 5100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,336 DEBUG Processing 56/735 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,388 DEBUG Processing 78/749 atomic regions from SNP 23177 to 23778 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,445 DEBUG Processing 446/857 atomic regions from SNP 133733 to 134333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,500 DEBUG Processing 17/706 atomic regions from SNP 4800 to 5400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,558 DEBUG Processing 57/735 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,647 DEBUG Processing 79/749 atomic regions from SNP 23478 to 24079 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,693 DEBUG Processing 447/857 atomic regions from SNP 134033 to 134633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,739 DEBUG Processing 18/706 atomic regions from SNP 5100 to 5700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,786 DEBUG Processing 58/735 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,896 DEBUG Processing 80/749 atomic regions from SNP 23779 to 24380 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,930 DEBUG Processing 448/857 atomic regions from SNP 134333 to 134933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,980 DEBUG Processing 19/706 atomic regions from SNP 5400 to 6000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,028 DEBUG Processing 59/735 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,142 DEBUG Processing 81/749 atomic regions from SNP 24080 to 24681 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,170 DEBUG Processing 449/857 atomic regions from SNP 134633 to 135233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,221 DEBUG Processing 20/706 atomic regions from SNP 5700 to 6300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,300 DEBUG Processing 60/735 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,385 DEBUG Processing 82/749 atomic regions from SNP 24381 to 24982 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,412 DEBUG Processing 450/857 atomic regions from SNP 134933 to 135533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,448 DEBUG Processing 21/706 atomic regions from SNP 6000 to 6600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,564 DEBUG Processing 61/735 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,637 DEBUG Processing 83/749 atomic regions from SNP 24682 to 25283 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,656 DEBUG Processing 451/857 atomic regions from SNP 135233 to 135833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,713 DEBUG Processing 22/706 atomic regions from SNP 6300 to 6900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,807 DEBUG Processing 62/735 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,890 DEBUG Processing 84/749 atomic regions from SNP 24983 to 25584 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,903 DEBUG Processing 452/857 atomic regions from SNP 135533 to 136133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,980 DEBUG Processing 23/706 atomic regions from SNP 6600 to 7200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,038 DEBUG Processing 63/735 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,142 DEBUG Processing 85/749 atomic regions from SNP 25284 to 25885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,147 DEBUG Processing 453/857 atomic regions from SNP 135833 to 136433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,238 DEBUG Processing 24/706 atomic regions from SNP 6900 to 7500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,267 DEBUG Processing 64/735 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,385 DEBUG Processing 454/857 atomic regions from SNP 136133 to 136733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,389 DEBUG Processing 86/749 atomic regions from SNP 25585 to 26186 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,491 DEBUG Processing 65/735 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,496 DEBUG Processing 25/706 atomic regions from SNP 7200 to 7800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,625 DEBUG Processing 455/857 atomic regions from SNP 136433 to 137033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,638 DEBUG Processing 87/749 atomic regions from SNP 25886 to 26487 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,714 DEBUG Processing 66/735 atomic regions from SNP 19565 to 20166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,730 DEBUG Processing 26/706 atomic regions from SNP 7500 to 8100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,865 DEBUG Processing 456/857 atomic regions from SNP 136733 to 137333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,886 DEBUG Processing 88/749 atomic regions from SNP 26187 to 26788 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,955 DEBUG Processing 67/735 atomic regions from SNP 19866 to 20467 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,971 DEBUG Processing 27/706 atomic regions from SNP 7800 to 8400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,109 DEBUG Processing 457/857 atomic regions from SNP 137033 to 137633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,136 DEBUG Processing 89/749 atomic regions from SNP 26488 to 27089 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,182 DEBUG Processing 68/735 atomic regions from SNP 20167 to 20768 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,215 DEBUG Processing 28/706 atomic regions from SNP 8100 to 8700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,355 DEBUG Processing 458/857 atomic regions from SNP 137333 to 137933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,387 DEBUG Processing 90/749 atomic regions from SNP 26789 to 27390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,418 DEBUG Processing 69/735 atomic regions from SNP 20468 to 21069 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,481 DEBUG Processing 29/706 atomic regions from SNP 8400 to 9000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,609 DEBUG Processing 459/857 atomic regions from SNP 137633 to 138233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,640 DEBUG Processing 91/749 atomic regions from SNP 27090 to 27691 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,668 DEBUG Processing 70/735 atomic regions from SNP 20769 to 21370 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,751 DEBUG Processing 30/706 atomic regions from SNP 8700 to 9300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,847 DEBUG Processing 460/857 atomic regions from SNP 137933 to 138533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,884 DEBUG Processing 92/749 atomic regions from SNP 27391 to 27992 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,933 DEBUG Processing 71/735 atomic regions from SNP 21070 to 21671 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,016 DEBUG Processing 31/706 atomic regions from SNP 9000 to 9600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,082 DEBUG Processing 461/857 atomic regions from SNP 138233 to 138833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,127 DEBUG Processing 93/749 atomic regions from SNP 27692 to 28293 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,164 DEBUG Processing 72/735 atomic regions from SNP 21371 to 21972 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,290 DEBUG Processing 32/706 atomic regions from SNP 9300 to 9900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,342 DEBUG Processing 462/857 atomic regions from SNP 138533 to 139133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,380 DEBUG Processing 94/749 atomic regions from SNP 27993 to 28594 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,401 DEBUG Processing 73/735 atomic regions from SNP 21672 to 22273 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,568 DEBUG Processing 33/706 atomic regions from SNP 9600 to 10200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,606 DEBUG Processing 463/857 atomic regions from SNP 138833 to 139433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,630 DEBUG Processing 95/749 atomic regions from SNP 28294 to 28895 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,634 DEBUG Processing 74/735 atomic regions from SNP 21973 to 22574 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,837 DEBUG Processing 34/706 atomic regions from SNP 9900 to 10500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,878 DEBUG Processing 75/735 atomic regions from SNP 22274 to 22875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,886 DEBUG Processing 96/749 atomic regions from SNP 28595 to 29196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,903 DEBUG Processing 464/857 atomic regions from SNP 139133 to 139733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,103 DEBUG Processing 35/706 atomic regions from SNP 10200 to 10800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,110 DEBUG Processing 76/735 atomic regions from SNP 22575 to 23176 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,132 DEBUG Processing 97/749 atomic regions from SNP 28896 to 29497 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,183 DEBUG Processing 465/857 atomic regions from SNP 139433 to 140033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,345 DEBUG Processing 77/735 atomic regions from SNP 22876 to 23477 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,351 DEBUG Processing 36/706 atomic regions from SNP 10500 to 11100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,388 DEBUG Processing 98/749 atomic regions from SNP 29197 to 29798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,467 DEBUG Processing 466/857 atomic regions from SNP 139733 to 140333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,576 DEBUG Processing 78/735 atomic regions from SNP 23177 to 23778 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,589 DEBUG Processing 37/706 atomic regions from SNP 10800 to 11400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,653 DEBUG Processing 99/749 atomic regions from SNP 29498 to 30099 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,742 DEBUG Processing 467/857 atomic regions from SNP 140033 to 140633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,811 DEBUG Processing 79/735 atomic regions from SNP 23478 to 24079 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,834 DEBUG Processing 38/706 atomic regions from SNP 11100 to 11700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,905 DEBUG Processing 100/749 atomic regions from SNP 29799 to 30400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,996 DEBUG Processing 468/857 atomic regions from SNP 140333 to 140933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,036 DEBUG Processing 80/735 atomic regions from SNP 23779 to 24380 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,083 DEBUG Processing 39/706 atomic regions from SNP 11400 to 12000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,179 DEBUG Processing 101/749 atomic regions from SNP 30100 to 30701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,247 DEBUG Processing 469/857 atomic regions from SNP 140633 to 141233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,268 DEBUG Processing 81/735 atomic regions from SNP 24080 to 24681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,343 DEBUG Processing 40/706 atomic regions from SNP 11700 to 12300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,441 DEBUG Processing 102/749 atomic regions from SNP 30401 to 31002 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,496 DEBUG Processing 470/857 atomic regions from SNP 140933 to 141533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,504 DEBUG Processing 82/735 atomic regions from SNP 24381 to 24982 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,615 DEBUG Processing 41/706 atomic regions from SNP 12000 to 12600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,689 DEBUG Processing 103/749 atomic regions from SNP 30702 to 31303 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,744 DEBUG Processing 83/735 atomic regions from SNP 24682 to 25283 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,750 DEBUG Processing 471/857 atomic regions from SNP 141233 to 141833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,880 DEBUG Processing 42/706 atomic regions from SNP 12300 to 12900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,938 DEBUG Processing 104/749 atomic regions from SNP 31003 to 31604 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,984 DEBUG Processing 84/735 atomic regions from SNP 24983 to 25584 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,007 DEBUG Processing 472/857 atomic regions from SNP 141533 to 142133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,148 DEBUG Processing 43/706 atomic regions from SNP 12600 to 13200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,183 DEBUG Processing 105/749 atomic regions from SNP 31304 to 31905 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,218 DEBUG Processing 85/735 atomic regions from SNP 25284 to 25885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,258 DEBUG Processing 473/857 atomic regions from SNP 141833 to 142433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,394 DEBUG Processing 44/706 atomic regions from SNP 12900 to 13500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,433 DEBUG Processing 106/749 atomic regions from SNP 31605 to 32206 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,446 DEBUG Processing 86/735 atomic regions from SNP 25585 to 26186 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,504 DEBUG Processing 474/857 atomic regions from SNP 142133 to 142733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,638 DEBUG Processing 45/706 atomic regions from SNP 13200 to 13800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,687 DEBUG Processing 87/735 atomic regions from SNP 25886 to 26487 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,691 DEBUG Processing 107/749 atomic regions from SNP 31906 to 32507 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,755 DEBUG Processing 475/857 atomic regions from SNP 142433 to 143033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,887 DEBUG Processing 46/706 atomic regions from SNP 13500 to 14100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,931 DEBUG Processing 88/735 atomic regions from SNP 26187 to 26788 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,952 DEBUG Processing 108/749 atomic regions from SNP 32207 to 32808 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,003 DEBUG Processing 476/857 atomic regions from SNP 142733 to 143333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,119 DEBUG Processing 47/706 atomic regions from SNP 13800 to 14400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,163 DEBUG Processing 89/735 atomic regions from SNP 26488 to 27089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,198 DEBUG Processing 109/749 atomic regions from SNP 32508 to 33109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,244 DEBUG Processing 477/857 atomic regions from SNP 143033 to 143633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,355 DEBUG Processing 48/706 atomic regions from SNP 14100 to 14700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,390 DEBUG Processing 90/735 atomic regions from SNP 26789 to 27389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,438 DEBUG Processing 110/749 atomic regions from SNP 32809 to 33410 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,510 DEBUG Processing 478/857 atomic regions from SNP 143333 to 143933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,591 DEBUG Processing 49/706 atomic regions from SNP 14400 to 15000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,622 DEBUG Processing 91/735 atomic regions from SNP 27089 to 27689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,678 DEBUG Processing 111/749 atomic regions from SNP 33110 to 33711 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,766 DEBUG Processing 479/857 atomic regions from SNP 143633 to 144233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,819 DEBUG Processing 50/706 atomic regions from SNP 14700 to 15300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,854 DEBUG Processing 92/735 atomic regions from SNP 27389 to 27989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,923 DEBUG Processing 112/749 atomic regions from SNP 33411 to 34012 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,999 DEBUG Processing 480/857 atomic regions from SNP 143933 to 144533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,049 DEBUG Processing 51/706 atomic regions from SNP 15000 to 15600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,095 DEBUG Processing 93/735 atomic regions from SNP 27689 to 28289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,170 DEBUG Processing 113/749 atomic regions from SNP 33712 to 34313 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,268 DEBUG Processing 481/857 atomic regions from SNP 144233 to 144833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,282 DEBUG Processing 52/706 atomic regions from SNP 15300 to 15900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,341 DEBUG Processing 94/735 atomic regions from SNP 27989 to 28589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,416 DEBUG Processing 114/749 atomic regions from SNP 34013 to 34614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,515 DEBUG Processing 53/706 atomic regions from SNP 15600 to 16200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,532 DEBUG Processing 482/857 atomic regions from SNP 144533 to 145133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,571 DEBUG Processing 95/735 atomic regions from SNP 28289 to 28889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,671 DEBUG Processing 115/749 atomic regions from SNP 34314 to 34915 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,741 DEBUG Processing 54/706 atomic regions from SNP 15900 to 16500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,781 DEBUG Processing 483/857 atomic regions from SNP 144833 to 145433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,796 DEBUG Processing 96/735 atomic regions from SNP 28589 to 29189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,925 DEBUG Processing 116/749 atomic regions from SNP 34615 to 35216 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,003 DEBUG Processing 55/706 atomic regions from SNP 16200 to 16800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,020 DEBUG Processing 97/735 atomic regions from SNP 28889 to 29489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,049 DEBUG Processing 484/857 atomic regions from SNP 145133 to 145733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,184 DEBUG Processing 117/749 atomic regions from SNP 34916 to 35517 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,245 DEBUG Processing 56/706 atomic regions from SNP 16500 to 17100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,255 DEBUG Processing 98/735 atomic regions from SNP 29189 to 29789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,329 DEBUG Processing 485/857 atomic regions from SNP 145433 to 146033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,437 DEBUG Processing 118/749 atomic regions from SNP 35217 to 35818 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,494 DEBUG Processing 57/706 atomic regions from SNP 16800 to 17400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,499 DEBUG Processing 99/735 atomic regions from SNP 29489 to 30089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,608 DEBUG Processing 486/857 atomic regions from SNP 145733 to 146333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,690 DEBUG Processing 119/749 atomic regions from SNP 35518 to 36119 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,730 DEBUG Processing 58/706 atomic regions from SNP 17100 to 17700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,731 DEBUG Processing 100/735 atomic regions from SNP 29789 to 30389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,870 DEBUG Processing 487/857 atomic regions from SNP 146033 to 146633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,936 DEBUG Processing 120/749 atomic regions from SNP 35819 to 36420 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,961 DEBUG Processing 101/735 atomic regions from SNP 30089 to 30689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,965 DEBUG Processing 59/706 atomic regions from SNP 17400 to 18000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,127 DEBUG Processing 488/857 atomic regions from SNP 146333 to 146933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,182 DEBUG Processing 121/749 atomic regions from SNP 36120 to 36721 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,198 DEBUG Processing 102/735 atomic regions from SNP 30389 to 30989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,202 DEBUG Processing 60/706 atomic regions from SNP 17700 to 18300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,393 DEBUG Processing 489/857 atomic regions from SNP 146633 to 147233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,431 DEBUG Processing 122/749 atomic regions from SNP 36421 to 37022 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,445 DEBUG Processing 61/706 atomic regions from SNP 18000 to 18600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,452 DEBUG Processing 103/735 atomic regions from SNP 30689 to 31289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,647 DEBUG Processing 490/857 atomic regions from SNP 146933 to 147533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,695 DEBUG Processing 123/749 atomic regions from SNP 36722 to 37323 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,705 DEBUG Processing 104/735 atomic regions from SNP 30989 to 31589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,712 DEBUG Processing 62/706 atomic regions from SNP 18300 to 18900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,901 DEBUG Processing 491/857 atomic regions from SNP 147233 to 147833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,950 DEBUG Processing 124/749 atomic regions from SNP 37023 to 37624 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,967 DEBUG Processing 105/735 atomic regions from SNP 31289 to 31889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,976 DEBUG Processing 63/706 atomic regions from SNP 18600 to 19200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,173 DEBUG Processing 492/857 atomic regions from SNP 147533 to 148133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,205 DEBUG Processing 125/749 atomic regions from SNP 37324 to 37925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,207 DEBUG Processing 106/735 atomic regions from SNP 31589 to 32189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,240 DEBUG Processing 64/706 atomic regions from SNP 18900 to 19500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,456 DEBUG Processing 126/749 atomic regions from SNP 37625 to 38226 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,462 DEBUG Processing 493/857 atomic regions from SNP 147833 to 148433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,475 DEBUG Processing 107/735 atomic regions from SNP 31889 to 32489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,494 DEBUG Processing 65/706 atomic regions from SNP 19200 to 19800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,708 DEBUG Processing 127/749 atomic regions from SNP 37926 to 38527 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,734 DEBUG Processing 66/706 atomic regions from SNP 19500 to 20100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,734 DEBUG Processing 108/735 atomic regions from SNP 32189 to 32789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,736 DEBUG Processing 494/857 atomic regions from SNP 148133 to 148733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,950 DEBUG Processing 128/749 atomic regions from SNP 38227 to 38828 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,973 DEBUG Processing 67/706 atomic regions from SNP 19800 to 20400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,992 DEBUG Processing 109/735 atomic regions from SNP 32489 to 33089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,002 DEBUG Processing 495/857 atomic regions from SNP 148433 to 149033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,198 DEBUG Processing 129/749 atomic regions from SNP 38528 to 39129 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,211 DEBUG Processing 68/706 atomic regions from SNP 20100 to 20700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,249 DEBUG Processing 110/735 atomic regions from SNP 32789 to 33389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,271 DEBUG Processing 496/857 atomic regions from SNP 148733 to 149333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,447 DEBUG Processing 130/749 atomic regions from SNP 38829 to 39430 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,450 DEBUG Processing 69/706 atomic regions from SNP 20400 to 21000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,490 DEBUG Processing 111/735 atomic regions from SNP 33089 to 33689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,540 DEBUG Processing 497/857 atomic regions from SNP 149033 to 149633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,683 DEBUG Processing 70/706 atomic regions from SNP 20700 to 21300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,695 DEBUG Processing 131/749 atomic regions from SNP 39130 to 39731 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,727 DEBUG Processing 112/735 atomic regions from SNP 33389 to 33989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,812 DEBUG Processing 498/857 atomic regions from SNP 149333 to 149933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,921 DEBUG Processing 71/706 atomic regions from SNP 21000 to 21600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,942 DEBUG Processing 132/749 atomic regions from SNP 39431 to 40032 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,966 DEBUG Processing 113/735 atomic regions from SNP 33689 to 34289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,095 DEBUG Processing 499/857 atomic regions from SNP 149633 to 150233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,155 DEBUG Processing 72/706 atomic regions from SNP 21300 to 21900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,191 DEBUG Processing 133/749 atomic regions from SNP 39732 to 40333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,202 DEBUG Processing 114/735 atomic regions from SNP 33989 to 34589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,374 DEBUG Processing 500/857 atomic regions from SNP 149933 to 150533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,389 DEBUG Processing 73/706 atomic regions from SNP 21600 to 22200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,440 DEBUG Processing 115/735 atomic regions from SNP 34289 to 34889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,446 DEBUG Processing 134/749 atomic regions from SNP 40033 to 40634 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,624 DEBUG Processing 74/706 atomic regions from SNP 21900 to 22500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,625 DEBUG Processing 501/857 atomic regions from SNP 150233 to 150833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,680 DEBUG Processing 116/735 atomic regions from SNP 34589 to 35189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,702 DEBUG Processing 135/749 atomic regions from SNP 40334 to 40935 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,882 DEBUG Processing 75/706 atomic regions from SNP 22200 to 22800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,892 DEBUG Processing 502/857 atomic regions from SNP 150533 to 151133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,916 DEBUG Processing 117/735 atomic regions from SNP 34889 to 35489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,957 DEBUG Processing 136/749 atomic regions from SNP 40635 to 41236 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,129 DEBUG Processing 76/706 atomic regions from SNP 22500 to 23100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,156 DEBUG Processing 118/735 atomic regions from SNP 35189 to 35789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,170 DEBUG Processing 503/857 atomic regions from SNP 150833 to 151433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,211 DEBUG Processing 137/749 atomic regions from SNP 40936 to 41537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,371 DEBUG Processing 77/706 atomic regions from SNP 22800 to 23400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,399 DEBUG Processing 119/735 atomic regions from SNP 35489 to 36089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,445 DEBUG Processing 504/857 atomic regions from SNP 151133 to 151733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,464 DEBUG Processing 138/749 atomic regions from SNP 41237 to 41838 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,603 DEBUG Processing 78/706 atomic regions from SNP 23100 to 23700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,634 DEBUG Processing 120/735 atomic regions from SNP 35789 to 36389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,721 DEBUG Processing 505/857 atomic regions from SNP 151433 to 152033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,724 DEBUG Processing 139/749 atomic regions from SNP 41538 to 42139 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,857 DEBUG Processing 79/706 atomic regions from SNP 23400 to 24000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,866 DEBUG Processing 121/735 atomic regions from SNP 36089 to 36689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,970 DEBUG Processing 506/857 atomic regions from SNP 151733 to 152333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,976 DEBUG Processing 140/749 atomic regions from SNP 41839 to 42440 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,103 DEBUG Processing 122/735 atomic regions from SNP 36389 to 36989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,120 DEBUG Processing 80/706 atomic regions from SNP 23700 to 24300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,212 DEBUG Processing 507/857 atomic regions from SNP 152033 to 152633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,218 DEBUG Processing 141/749 atomic regions from SNP 42140 to 42741 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,334 DEBUG Processing 123/735 atomic regions from SNP 36689 to 37289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,354 DEBUG Processing 81/706 atomic regions from SNP 24000 to 24600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,447 DEBUG Processing 508/857 atomic regions from SNP 152333 to 152933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,455 DEBUG Processing 142/749 atomic regions from SNP 42441 to 43042 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,589 DEBUG Processing 82/706 atomic regions from SNP 24300 to 24900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,592 DEBUG Processing 124/735 atomic regions from SNP 36989 to 37589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,694 DEBUG Processing 509/857 atomic regions from SNP 152633 to 153233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,709 DEBUG Processing 143/749 atomic regions from SNP 42742 to 43343 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,825 DEBUG Processing 83/706 atomic regions from SNP 24600 to 25200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,853 DEBUG Processing 125/735 atomic regions from SNP 37289 to 37889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,951 DEBUG Processing 144/749 atomic regions from SNP 43043 to 43644 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,969 DEBUG Processing 510/857 atomic regions from SNP 152933 to 153533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,065 DEBUG Processing 84/706 atomic regions from SNP 24900 to 25500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,104 DEBUG Processing 126/735 atomic regions from SNP 37589 to 38189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,191 DEBUG Processing 145/749 atomic regions from SNP 43344 to 43945 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,233 DEBUG Processing 511/857 atomic regions from SNP 153233 to 153833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,303 DEBUG Processing 85/706 atomic regions from SNP 25200 to 25800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,347 DEBUG Processing 127/735 atomic regions from SNP 37889 to 38489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,433 DEBUG Processing 146/749 atomic regions from SNP 43645 to 44246 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,502 DEBUG Processing 512/857 atomic regions from SNP 153533 to 154133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,541 DEBUG Processing 86/706 atomic regions from SNP 25500 to 26100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,582 DEBUG Processing 128/735 atomic regions from SNP 38189 to 38789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,674 DEBUG Processing 147/749 atomic regions from SNP 43946 to 44547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,777 DEBUG Processing 513/857 atomic regions from SNP 153833 to 154433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,780 DEBUG Processing 87/706 atomic regions from SNP 25800 to 26400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,814 DEBUG Processing 129/735 atomic regions from SNP 38489 to 39089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,916 DEBUG Processing 148/749 atomic regions from SNP 44247 to 44848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,026 DEBUG Processing 88/706 atomic regions from SNP 26100 to 26700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,058 DEBUG Processing 130/735 atomic regions from SNP 38789 to 39389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,059 DEBUG Processing 514/857 atomic regions from SNP 154133 to 154733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,159 DEBUG Processing 149/749 atomic regions from SNP 44548 to 45149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,265 DEBUG Processing 89/706 atomic regions from SNP 26400 to 27000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,294 DEBUG Processing 131/735 atomic regions from SNP 39089 to 39689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,324 DEBUG Processing 515/857 atomic regions from SNP 154433 to 155033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,398 DEBUG Processing 150/749 atomic regions from SNP 44849 to 45450 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,503 DEBUG Processing 90/706 atomic regions from SNP 26700 to 27300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,532 DEBUG Processing 132/735 atomic regions from SNP 39389 to 39989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,584 DEBUG Processing 516/857 atomic regions from SNP 154733 to 155333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,641 DEBUG Processing 151/749 atomic regions from SNP 45150 to 45751 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,744 DEBUG Processing 91/706 atomic regions from SNP 27000 to 27600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,802 DEBUG Processing 133/735 atomic regions from SNP 39689 to 40289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,855 DEBUG Processing 517/857 atomic regions from SNP 155033 to 155633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,887 DEBUG Processing 152/749 atomic regions from SNP 45451 to 46052 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,976 DEBUG Processing 92/706 atomic regions from SNP 27300 to 27900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,069 DEBUG Processing 134/735 atomic regions from SNP 39989 to 40589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,109 DEBUG Processing 518/857 atomic regions from SNP 155333 to 155933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,132 DEBUG Processing 153/749 atomic regions from SNP 45752 to 46353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,210 DEBUG Processing 93/706 atomic regions from SNP 27600 to 28200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,327 DEBUG Processing 135/735 atomic regions from SNP 40289 to 40889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,377 DEBUG Processing 154/749 atomic regions from SNP 46053 to 46654 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,388 DEBUG Processing 519/857 atomic regions from SNP 155633 to 156233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,442 DEBUG Processing 94/706 atomic regions from SNP 27900 to 28500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,556 DEBUG Processing 136/735 atomic regions from SNP 40589 to 41189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,623 DEBUG Processing 155/749 atomic regions from SNP 46354 to 46955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,648 DEBUG Processing 520/857 atomic regions from SNP 155933 to 156533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,676 DEBUG Processing 95/706 atomic regions from SNP 28200 to 28800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,786 DEBUG Processing 137/735 atomic regions from SNP 40889 to 41489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,871 DEBUG Processing 156/749 atomic regions from SNP 46655 to 47256 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,899 DEBUG Processing 521/857 atomic regions from SNP 156233 to 156833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,918 DEBUG Processing 96/706 atomic regions from SNP 28500 to 29100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,021 DEBUG Processing 138/735 atomic regions from SNP 41189 to 41789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,118 DEBUG Processing 157/749 atomic regions from SNP 46956 to 47557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,150 DEBUG Processing 522/857 atomic regions from SNP 156533 to 157133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,158 DEBUG Processing 97/706 atomic regions from SNP 28800 to 29400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,253 DEBUG Processing 139/735 atomic regions from SNP 41489 to 42089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,359 DEBUG Processing 158/749 atomic regions from SNP 47257 to 47858 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,398 DEBUG Processing 523/857 atomic regions from SNP 156833 to 157433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,398 DEBUG Processing 98/706 atomic regions from SNP 29100 to 29700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,484 DEBUG Processing 140/735 atomic regions from SNP 41789 to 42389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,601 DEBUG Processing 159/749 atomic regions from SNP 47558 to 48159 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,629 DEBUG Processing 99/706 atomic regions from SNP 29400 to 30000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,640 DEBUG Processing 524/857 atomic regions from SNP 157133 to 157733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,721 DEBUG Processing 141/735 atomic regions from SNP 42089 to 42689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,847 DEBUG Processing 160/749 atomic regions from SNP 47859 to 48460 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,861 DEBUG Processing 100/706 atomic regions from SNP 29700 to 30300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,884 DEBUG Processing 525/857 atomic regions from SNP 157433 to 158033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,960 DEBUG Processing 142/735 atomic regions from SNP 42389 to 42989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,092 DEBUG Processing 161/749 atomic regions from SNP 48160 to 48761 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,098 DEBUG Processing 101/706 atomic regions from SNP 30000 to 30600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,132 DEBUG Processing 526/857 atomic regions from SNP 157733 to 158333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,199 DEBUG Processing 143/735 atomic regions from SNP 42689 to 43289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,329 DEBUG Processing 102/706 atomic regions from SNP 30300 to 30900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,333 DEBUG Processing 162/749 atomic regions from SNP 48461 to 49062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,372 DEBUG Processing 527/857 atomic regions from SNP 158033 to 158633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,432 DEBUG Processing 144/735 atomic regions from SNP 42989 to 43589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,553 DEBUG Processing 103/706 atomic regions from SNP 30600 to 31200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,575 DEBUG Processing 163/749 atomic regions from SNP 48762 to 49363 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,610 DEBUG Processing 528/857 atomic regions from SNP 158333 to 158933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,667 DEBUG Processing 145/735 atomic regions from SNP 43289 to 43889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,785 DEBUG Processing 104/706 atomic regions from SNP 30900 to 31500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,815 DEBUG Processing 164/749 atomic regions from SNP 49063 to 49664 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,846 DEBUG Processing 529/857 atomic regions from SNP 158633 to 159233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,899 DEBUG Processing 146/735 atomic regions from SNP 43589 to 44189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,016 DEBUG Processing 105/706 atomic regions from SNP 31200 to 31800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,054 DEBUG Processing 165/749 atomic regions from SNP 49364 to 49965 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,082 DEBUG Processing 530/857 atomic regions from SNP 158933 to 159533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,136 DEBUG Processing 147/735 atomic regions from SNP 43889 to 44489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,258 DEBUG Processing 106/706 atomic regions from SNP 31500 to 32100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,292 DEBUG Processing 166/749 atomic regions from SNP 49665 to 50266 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,324 DEBUG Processing 531/857 atomic regions from SNP 159233 to 159833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,366 DEBUG Processing 148/735 atomic regions from SNP 44189 to 44789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,499 DEBUG Processing 107/706 atomic regions from SNP 31800 to 32400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,533 DEBUG Processing 167/749 atomic regions from SNP 49966 to 50567 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,571 DEBUG Processing 532/857 atomic regions from SNP 159533 to 160133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,595 DEBUG Processing 149/735 atomic regions from SNP 44489 to 45089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,735 DEBUG Processing 108/706 atomic regions from SNP 32100 to 32700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,777 DEBUG Processing 168/749 atomic regions from SNP 50267 to 50868 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,814 DEBUG Processing 533/857 atomic regions from SNP 159833 to 160433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,822 DEBUG Processing 150/735 atomic regions from SNP 44789 to 45389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,995 DEBUG Processing 109/706 atomic regions from SNP 32400 to 33000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,031 DEBUG Processing 169/749 atomic regions from SNP 50568 to 51169 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,051 DEBUG Processing 151/735 atomic regions from SNP 45089 to 45689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,058 DEBUG Processing 534/857 atomic regions from SNP 160133 to 160733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,265 DEBUG Processing 110/706 atomic regions from SNP 32700 to 33300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,281 DEBUG Processing 170/749 atomic regions from SNP 50869 to 51470 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,290 DEBUG Processing 152/735 atomic regions from SNP 45389 to 45989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,325 DEBUG Processing 535/857 atomic regions from SNP 160433 to 161033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,526 DEBUG Processing 153/735 atomic regions from SNP 45689 to 46289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,534 DEBUG Processing 171/749 atomic regions from SNP 51170 to 51771 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,536 DEBUG Processing 111/706 atomic regions from SNP 33000 to 33600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,596 DEBUG Processing 536/857 atomic regions from SNP 160733 to 161333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,764 DEBUG Processing 154/735 atomic regions from SNP 45989 to 46589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,792 DEBUG Processing 172/749 atomic regions from SNP 51471 to 52072 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,808 DEBUG Processing 112/706 atomic regions from SNP 33300 to 33900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,868 DEBUG Processing 537/857 atomic regions from SNP 161033 to 161633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,991 DEBUG Processing 155/735 atomic regions from SNP 46289 to 46889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,039 DEBUG Processing 173/749 atomic regions from SNP 51772 to 52373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,085 DEBUG Processing 113/706 atomic regions from SNP 33600 to 34200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,130 DEBUG Processing 538/857 atomic regions from SNP 161333 to 161933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,218 DEBUG Processing 156/735 atomic regions from SNP 46589 to 47189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,289 DEBUG Processing 174/749 atomic regions from SNP 52073 to 52674 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,358 DEBUG Processing 114/706 atomic regions from SNP 33900 to 34500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,379 DEBUG Processing 539/857 atomic regions from SNP 161633 to 162233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,439 DEBUG Processing 157/735 atomic regions from SNP 46889 to 47489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,534 DEBUG Processing 175/749 atomic regions from SNP 52374 to 52975 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,627 DEBUG Processing 540/857 atomic regions from SNP 161933 to 162533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,631 DEBUG Processing 115/706 atomic regions from SNP 34200 to 34800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,667 DEBUG Processing 158/735 atomic regions from SNP 47189 to 47789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,777 DEBUG Processing 176/749 atomic regions from SNP 52675 to 53276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,875 DEBUG Processing 541/857 atomic regions from SNP 162233 to 162833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,898 DEBUG Processing 159/735 atomic regions from SNP 47489 to 48089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,904 DEBUG Processing 116/706 atomic regions from SNP 34500 to 35100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,018 DEBUG Processing 177/749 atomic regions from SNP 52976 to 53577 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,124 DEBUG Processing 542/857 atomic regions from SNP 162533 to 163133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,130 DEBUG Processing 160/735 atomic regions from SNP 47789 to 48389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,177 DEBUG Processing 117/706 atomic regions from SNP 34800 to 35400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,264 DEBUG Processing 178/749 atomic regions from SNP 53277 to 53878 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,364 DEBUG Processing 161/735 atomic regions from SNP 48089 to 48689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,369 DEBUG Processing 543/857 atomic regions from SNP 162833 to 163433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,438 DEBUG Processing 118/706 atomic regions from SNP 35100 to 35700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,509 DEBUG Processing 179/749 atomic regions from SNP 53578 to 54179 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,600 DEBUG Processing 162/735 atomic regions from SNP 48389 to 48989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,616 DEBUG Processing 544/857 atomic regions from SNP 163133 to 163733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,695 DEBUG Processing 119/706 atomic regions from SNP 35400 to 36000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,754 DEBUG Processing 180/749 atomic regions from SNP 53879 to 54480 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,835 DEBUG Processing 163/735 atomic regions from SNP 48689 to 49289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,864 DEBUG Processing 545/857 atomic regions from SNP 163433 to 164033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,929 DEBUG Processing 120/706 atomic regions from SNP 35700 to 36300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,996 DEBUG Processing 181/749 atomic regions from SNP 54180 to 54781 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,063 DEBUG Processing 164/735 atomic regions from SNP 48989 to 49589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,108 DEBUG Processing 546/857 atomic regions from SNP 163733 to 164333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,162 DEBUG Processing 121/706 atomic regions from SNP 36000 to 36600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,245 DEBUG Processing 182/749 atomic regions from SNP 54481 to 55082 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,292 DEBUG Processing 165/735 atomic regions from SNP 49289 to 49889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,358 DEBUG Processing 547/857 atomic regions from SNP 164033 to 164633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,397 DEBUG Processing 122/706 atomic regions from SNP 36300 to 36900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,495 DEBUG Processing 183/749 atomic regions from SNP 54782 to 55383 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,518 DEBUG Processing 166/735 atomic regions from SNP 49589 to 50189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,607 DEBUG Processing 548/857 atomic regions from SNP 164333 to 164933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,630 DEBUG Processing 123/706 atomic regions from SNP 36600 to 37200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,770 DEBUG Processing 167/735 atomic regions from SNP 49889 to 50489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,770 DEBUG Processing 184/749 atomic regions from SNP 55083 to 55684 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,868 DEBUG Processing 549/857 atomic regions from SNP 164633 to 165233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,913 DEBUG Processing 124/706 atomic regions from SNP 36900 to 37500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,994 DEBUG Processing 168/735 atomic regions from SNP 50189 to 50789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,009 DEBUG Processing 185/749 atomic regions from SNP 55384 to 55985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,121 DEBUG Processing 550/857 atomic regions from SNP 164933 to 165533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,170 DEBUG Processing 125/706 atomic regions from SNP 37200 to 37800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,224 DEBUG Processing 169/735 atomic regions from SNP 50489 to 51089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,254 DEBUG Processing 186/749 atomic regions from SNP 55685 to 56286 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,380 DEBUG Processing 551/857 atomic regions from SNP 165233 to 165833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,432 DEBUG Processing 126/706 atomic regions from SNP 37500 to 38100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,457 DEBUG Processing 170/735 atomic regions from SNP 50789 to 51389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,498 DEBUG Processing 187/749 atomic regions from SNP 55986 to 56587 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,619 DEBUG Processing 552/857 atomic regions from SNP 165533 to 166133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,685 DEBUG Processing 127/706 atomic regions from SNP 37800 to 38400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,706 DEBUG Processing 171/735 atomic regions from SNP 51089 to 51689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,735 DEBUG Processing 188/749 atomic regions from SNP 56287 to 56888 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,877 DEBUG Processing 553/857 atomic regions from SNP 165833 to 166433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,929 DEBUG Processing 128/706 atomic regions from SNP 38100 to 38700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,968 DEBUG Processing 189/749 atomic regions from SNP 56588 to 57189 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,970 DEBUG Processing 172/735 atomic regions from SNP 51389 to 51989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,119 DEBUG Processing 554/857 atomic regions from SNP 166133 to 166733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,166 DEBUG Processing 129/706 atomic regions from SNP 38400 to 39000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,204 DEBUG Processing 190/749 atomic regions from SNP 56889 to 57490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,211 DEBUG Processing 173/735 atomic regions from SNP 51689 to 52289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,363 DEBUG Processing 555/857 atomic regions from SNP 166433 to 167033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,409 DEBUG Processing 130/706 atomic regions from SNP 38700 to 39300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,450 DEBUG Processing 191/749 atomic regions from SNP 57190 to 57791 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,459 DEBUG Processing 174/735 atomic regions from SNP 51989 to 52589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,606 DEBUG Processing 556/857 atomic regions from SNP 166733 to 167333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,648 DEBUG Processing 131/706 atomic regions from SNP 39000 to 39600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,692 DEBUG Processing 175/735 atomic regions from SNP 52289 to 52889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,695 DEBUG Processing 192/749 atomic regions from SNP 57491 to 58092 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,850 DEBUG Processing 557/857 atomic regions from SNP 167033 to 167633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,887 DEBUG Processing 132/706 atomic regions from SNP 39300 to 39900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,923 DEBUG Processing 176/735 atomic regions from SNP 52589 to 53189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,935 DEBUG Processing 193/749 atomic regions from SNP 57792 to 58393 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,091 DEBUG Processing 558/857 atomic regions from SNP 167333 to 167933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,130 DEBUG Processing 133/706 atomic regions from SNP 39600 to 40200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,164 DEBUG Processing 177/735 atomic regions from SNP 52889 to 53489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,177 DEBUG Processing 194/749 atomic regions from SNP 58093 to 58694 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,336 DEBUG Processing 559/857 atomic regions from SNP 167633 to 168233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,375 DEBUG Processing 134/706 atomic regions from SNP 39900 to 40500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,409 DEBUG Processing 178/735 atomic regions from SNP 53189 to 53789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,429 DEBUG Processing 195/749 atomic regions from SNP 58394 to 58995 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,571 DEBUG Processing 560/857 atomic regions from SNP 167933 to 168533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,609 DEBUG Processing 135/706 atomic regions from SNP 40200 to 40800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,647 DEBUG Processing 179/735 atomic regions from SNP 53489 to 54089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,673 DEBUG Processing 196/749 atomic regions from SNP 58695 to 59296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,812 DEBUG Processing 561/857 atomic regions from SNP 168233 to 168833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,855 DEBUG Processing 136/706 atomic regions from SNP 40500 to 41100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,896 DEBUG Processing 180/735 atomic regions from SNP 53789 to 54389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,916 DEBUG Processing 197/749 atomic regions from SNP 58996 to 59597 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,045 DEBUG Processing 562/857 atomic regions from SNP 168533 to 169133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,105 DEBUG Processing 137/706 atomic regions from SNP 40800 to 41400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,131 DEBUG Processing 181/735 atomic regions from SNP 54089 to 54689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,159 DEBUG Processing 198/749 atomic regions from SNP 59297 to 59898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,279 DEBUG Processing 563/857 atomic regions from SNP 168833 to 169433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,350 DEBUG Processing 138/706 atomic regions from SNP 41100 to 41700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,363 DEBUG Processing 182/735 atomic regions from SNP 54389 to 54989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,406 DEBUG Processing 199/749 atomic regions from SNP 59598 to 60198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,516 DEBUG Processing 564/857 atomic regions from SNP 169133 to 169733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,581 DEBUG Processing 139/706 atomic regions from SNP 41400 to 42000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,594 DEBUG Processing 183/735 atomic regions from SNP 54689 to 55289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,638 DEBUG Processing 200/749 atomic regions from SNP 59898 to 60498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,756 DEBUG Processing 565/857 atomic regions from SNP 169433 to 170033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,810 DEBUG Processing 140/706 atomic regions from SNP 41700 to 42300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,821 DEBUG Processing 184/735 atomic regions from SNP 54989 to 55589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,868 DEBUG Processing 201/749 atomic regions from SNP 60198 to 60798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,997 DEBUG Processing 566/857 atomic regions from SNP 169733 to 170333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,046 DEBUG Processing 141/706 atomic regions from SNP 42000 to 42600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,053 DEBUG Processing 185/735 atomic regions from SNP 55289 to 55889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,104 DEBUG Processing 202/749 atomic regions from SNP 60498 to 61098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,240 DEBUG Processing 567/857 atomic regions from SNP 170033 to 170633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,290 DEBUG Processing 186/735 atomic regions from SNP 55589 to 56189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,300 DEBUG Processing 142/706 atomic regions from SNP 42300 to 42900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,345 DEBUG Processing 203/749 atomic regions from SNP 60798 to 61398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,481 DEBUG Processing 568/857 atomic regions from SNP 170333 to 170933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,542 DEBUG Processing 143/706 atomic regions from SNP 42600 to 43200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,552 DEBUG Processing 187/735 atomic regions from SNP 55889 to 56489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,599 DEBUG Processing 204/749 atomic regions from SNP 61098 to 61698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,715 DEBUG Processing 569/857 atomic regions from SNP 170633 to 171233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,778 DEBUG Processing 144/706 atomic regions from SNP 42900 to 43500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,788 DEBUG Processing 188/735 atomic regions from SNP 56189 to 56789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,838 DEBUG Processing 205/749 atomic regions from SNP 61398 to 61998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,950 DEBUG Processing 570/857 atomic regions from SNP 170933 to 171533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,016 DEBUG Processing 145/706 atomic regions from SNP 43200 to 43800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,020 DEBUG Processing 189/735 atomic regions from SNP 56489 to 57089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,084 DEBUG Processing 206/749 atomic regions from SNP 61698 to 62298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,195 DEBUG Processing 571/857 atomic regions from SNP 171233 to 171833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,257 DEBUG Processing 190/735 atomic regions from SNP 56789 to 57389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,258 DEBUG Processing 146/706 atomic regions from SNP 43500 to 44100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,343 DEBUG Processing 207/749 atomic regions from SNP 61998 to 62598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,448 DEBUG Processing 572/857 atomic regions from SNP 171533 to 172133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,488 DEBUG Processing 191/735 atomic regions from SNP 57089 to 57689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,495 DEBUG Processing 147/706 atomic regions from SNP 43800 to 44400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,583 DEBUG Processing 208/749 atomic regions from SNP 62298 to 62898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,696 DEBUG Processing 573/857 atomic regions from SNP 171833 to 172433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,719 DEBUG Processing 192/735 atomic regions from SNP 57389 to 57989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,727 DEBUG Processing 148/706 atomic regions from SNP 44100 to 44700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,821 DEBUG Processing 209/749 atomic regions from SNP 62598 to 63198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,943 DEBUG Processing 574/857 atomic regions from SNP 172133 to 172733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,954 DEBUG Processing 193/735 atomic regions from SNP 57689 to 58289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,961 DEBUG Processing 149/706 atomic regions from SNP 44400 to 45000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,058 DEBUG Processing 210/749 atomic regions from SNP 62898 to 63498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,189 DEBUG Processing 194/735 atomic regions from SNP 57989 to 58589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,196 DEBUG Processing 575/857 atomic regions from SNP 172433 to 173033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,200 DEBUG Processing 150/706 atomic regions from SNP 44700 to 45300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,293 DEBUG Processing 211/749 atomic regions from SNP 63198 to 63798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,433 DEBUG Processing 195/735 atomic regions from SNP 58289 to 58889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,445 DEBUG Processing 151/706 atomic regions from SNP 45000 to 45600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,449 DEBUG Processing 576/857 atomic regions from SNP 172733 to 173333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,531 DEBUG Processing 212/749 atomic regions from SNP 63498 to 64098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,674 DEBUG Processing 196/735 atomic regions from SNP 58589 to 59189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,691 DEBUG Processing 152/706 atomic regions from SNP 45300 to 45900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,701 DEBUG Processing 577/857 atomic regions from SNP 173033 to 173633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,770 DEBUG Processing 213/749 atomic regions from SNP 63798 to 64398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,909 DEBUG Processing 197/735 atomic regions from SNP 58889 to 59489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,930 DEBUG Processing 153/706 atomic regions from SNP 45600 to 46200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,951 DEBUG Processing 578/857 atomic regions from SNP 173333 to 173933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,022 DEBUG Processing 214/749 atomic regions from SNP 64098 to 64698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,143 DEBUG Processing 198/735 atomic regions from SNP 59189 to 59789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,173 DEBUG Processing 154/706 atomic regions from SNP 45900 to 46500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,202 DEBUG Processing 579/857 atomic regions from SNP 173633 to 174233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,263 DEBUG Processing 215/749 atomic regions from SNP 64398 to 64998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,376 DEBUG Processing 199/735 atomic regions from SNP 59489 to 60089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,411 DEBUG Processing 155/706 atomic regions from SNP 46200 to 46800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,449 DEBUG Processing 580/857 atomic regions from SNP 173933 to 174533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,526 DEBUG Processing 216/749 atomic regions from SNP 64698 to 65298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,604 DEBUG Processing 200/735 atomic regions from SNP 59789 to 60389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,644 DEBUG Processing 156/706 atomic regions from SNP 46500 to 47100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,693 DEBUG Processing 581/857 atomic regions from SNP 174233 to 174833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,802 DEBUG Processing 217/749 atomic regions from SNP 64998 to 65598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,829 DEBUG Processing 201/735 atomic regions from SNP 60089 to 60689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,878 DEBUG Processing 157/706 atomic regions from SNP 46800 to 47400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,938 DEBUG Processing 582/857 atomic regions from SNP 174533 to 175133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,058 DEBUG Processing 202/735 atomic regions from SNP 60389 to 60989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,065 DEBUG Processing 218/749 atomic regions from SNP 65298 to 65898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,110 DEBUG Processing 158/706 atomic regions from SNP 47100 to 47700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,184 DEBUG Processing 583/857 atomic regions from SNP 174833 to 175433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,298 DEBUG Processing 203/735 atomic regions from SNP 60689 to 61289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,309 DEBUG Processing 219/749 atomic regions from SNP 65598 to 66198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,368 DEBUG Processing 159/706 atomic regions from SNP 47400 to 48000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,438 DEBUG Processing 584/857 atomic regions from SNP 175133 to 175733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,529 DEBUG Processing 204/735 atomic regions from SNP 60989 to 61589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,549 DEBUG Processing 220/749 atomic regions from SNP 65898 to 66498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,603 DEBUG Processing 160/706 atomic regions from SNP 47700 to 48300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,683 DEBUG Processing 585/857 atomic regions from SNP 175433 to 176033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,762 DEBUG Processing 205/735 atomic regions from SNP 61289 to 61889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,787 DEBUG Processing 221/749 atomic regions from SNP 66198 to 66798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,835 DEBUG Processing 161/706 atomic regions from SNP 48000 to 48600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,929 DEBUG Processing 586/857 atomic regions from SNP 175733 to 176333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,990 DEBUG Processing 206/735 atomic regions from SNP 61589 to 62189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,024 DEBUG Processing 222/749 atomic regions from SNP 66498 to 67098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,065 DEBUG Processing 162/706 atomic regions from SNP 48300 to 48900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,168 DEBUG Processing 587/857 atomic regions from SNP 176033 to 176633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,217 DEBUG Processing 207/735 atomic regions from SNP 61889 to 62489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,267 DEBUG Processing 223/749 atomic regions from SNP 66798 to 67398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,290 DEBUG Processing 163/706 atomic regions from SNP 48600 to 49200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,412 DEBUG Processing 588/857 atomic regions from SNP 176333 to 176933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,447 DEBUG Processing 208/735 atomic regions from SNP 62189 to 62789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,515 DEBUG Processing 224/749 atomic regions from SNP 67098 to 67698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,518 DEBUG Processing 164/706 atomic regions from SNP 48900 to 49500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,653 DEBUG Processing 589/857 atomic regions from SNP 176633 to 177233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,674 DEBUG Processing 209/735 atomic regions from SNP 62489 to 63089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,743 DEBUG Processing 165/706 atomic regions from SNP 49200 to 49800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,769 DEBUG Processing 225/749 atomic regions from SNP 67398 to 67998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,900 DEBUG Processing 590/857 atomic regions from SNP 176933 to 177533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,908 DEBUG Processing 210/735 atomic regions from SNP 62789 to 63389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,974 DEBUG Processing 166/706 atomic regions from SNP 49500 to 50100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,026 DEBUG Processing 226/749 atomic regions from SNP 67698 to 68298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,145 DEBUG Processing 211/735 atomic regions from SNP 63089 to 63689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,155 DEBUG Processing 591/857 atomic regions from SNP 177233 to 177833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,202 DEBUG Processing 167/706 atomic regions from SNP 49800 to 50400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,270 DEBUG Processing 227/749 atomic regions from SNP 67998 to 68598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,390 DEBUG Processing 212/735 atomic regions from SNP 63389 to 63989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,412 DEBUG Processing 592/857 atomic regions from SNP 177533 to 178133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,446 DEBUG Processing 168/706 atomic regions from SNP 50100 to 50700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,517 DEBUG Processing 228/749 atomic regions from SNP 68298 to 68898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,627 DEBUG Processing 213/735 atomic regions from SNP 63689 to 64289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,666 DEBUG Processing 593/857 atomic regions from SNP 177833 to 178433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,686 DEBUG Processing 169/706 atomic regions from SNP 50400 to 51000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,768 DEBUG Processing 229/749 atomic regions from SNP 68598 to 69198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,857 DEBUG Processing 214/735 atomic regions from SNP 63989 to 64589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,916 DEBUG Processing 594/857 atomic regions from SNP 178133 to 178733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,925 DEBUG Processing 170/706 atomic regions from SNP 50700 to 51300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,031 DEBUG Processing 230/749 atomic regions from SNP 68898 to 69498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,084 DEBUG Processing 215/735 atomic regions from SNP 64289 to 64889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,163 DEBUG Processing 171/706 atomic regions from SNP 51000 to 51600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,167 DEBUG Processing 595/857 atomic regions from SNP 178433 to 179033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,290 DEBUG Processing 231/749 atomic regions from SNP 69198 to 69798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,311 DEBUG Processing 216/735 atomic regions from SNP 64589 to 65189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,399 DEBUG Processing 172/706 atomic regions from SNP 51300 to 51900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,409 DEBUG Processing 596/857 atomic regions from SNP 178733 to 179333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,539 DEBUG Processing 217/735 atomic regions from SNP 64889 to 65489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,551 DEBUG Processing 232/749 atomic regions from SNP 69498 to 70098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,632 DEBUG Processing 173/706 atomic regions from SNP 51600 to 52200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,650 DEBUG Processing 597/857 atomic regions from SNP 179033 to 179633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,769 DEBUG Processing 218/735 atomic regions from SNP 65189 to 65789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,795 DEBUG Processing 233/749 atomic regions from SNP 69798 to 70398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,865 DEBUG Processing 174/706 atomic regions from SNP 51900 to 52500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,894 DEBUG Processing 598/857 atomic regions from SNP 179333 to 179933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,001 DEBUG Processing 219/735 atomic regions from SNP 65489 to 66089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,034 DEBUG Processing 234/749 atomic regions from SNP 70098 to 70698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,113 DEBUG Processing 175/706 atomic regions from SNP 52200 to 52800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,138 DEBUG Processing 599/857 atomic regions from SNP 179633 to 180233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,231 DEBUG Processing 220/735 atomic regions from SNP 65789 to 66389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,269 DEBUG Processing 235/749 atomic regions from SNP 70398 to 70998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,349 DEBUG Processing 176/706 atomic regions from SNP 52500 to 53100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,383 DEBUG Processing 600/857 atomic regions from SNP 179933 to 180533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,461 DEBUG Processing 221/735 atomic regions from SNP 66089 to 66689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,511 DEBUG Processing 236/749 atomic regions from SNP 70698 to 71298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,616 DEBUG Processing 177/706 atomic regions from SNP 52800 to 53400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,632 DEBUG Processing 601/857 atomic regions from SNP 180233 to 180833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,687 DEBUG Processing 222/735 atomic regions from SNP 66389 to 66989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,762 DEBUG Processing 237/749 atomic regions from SNP 70998 to 71598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,851 DEBUG Processing 178/706 atomic regions from SNP 53100 to 53700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,875 DEBUG Processing 602/857 atomic regions from SNP 180533 to 181133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,909 DEBUG Processing 223/735 atomic regions from SNP 66689 to 67289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,024 DEBUG Processing 238/749 atomic regions from SNP 71298 to 71898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,078 DEBUG Processing 179/706 atomic regions from SNP 53400 to 54000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,109 DEBUG Processing 603/857 atomic regions from SNP 180833 to 181433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,127 DEBUG Processing 224/735 atomic regions from SNP 66989 to 67589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,270 DEBUG Processing 239/749 atomic regions from SNP 71598 to 72198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,310 DEBUG Processing 180/706 atomic regions from SNP 53700 to 54300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,347 DEBUG Processing 604/857 atomic regions from SNP 181133 to 181733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,352 DEBUG Processing 225/735 atomic regions from SNP 67289 to 67889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,505 DEBUG Processing 240/749 atomic regions from SNP 71898 to 72498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,542 DEBUG Processing 181/706 atomic regions from SNP 54000 to 54600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,577 DEBUG Processing 226/735 atomic regions from SNP 67589 to 68189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,591 DEBUG Processing 605/857 atomic regions from SNP 181433 to 182033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,729 DEBUG Processing 241/749 atomic regions from SNP 72198 to 72798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,777 DEBUG Processing 182/706 atomic regions from SNP 54300 to 54900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,803 DEBUG Processing 227/735 atomic regions from SNP 67889 to 68489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,840 DEBUG Processing 606/857 atomic regions from SNP 181733 to 182333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,951 DEBUG Processing 242/749 atomic regions from SNP 72498 to 73098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,007 DEBUG Processing 183/706 atomic regions from SNP 54600 to 55200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,028 DEBUG Processing 228/735 atomic regions from SNP 68189 to 68789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,074 DEBUG Processing 607/857 atomic regions from SNP 182033 to 182633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,178 DEBUG Processing 243/749 atomic regions from SNP 72798 to 73398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,237 DEBUG Processing 184/706 atomic regions from SNP 54900 to 55500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,258 DEBUG Processing 229/735 atomic regions from SNP 68489 to 69089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,314 DEBUG Processing 608/857 atomic regions from SNP 182333 to 182933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,412 DEBUG Processing 244/749 atomic regions from SNP 73098 to 73698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,472 DEBUG Processing 185/706 atomic regions from SNP 55200 to 55800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,489 DEBUG Processing 230/735 atomic regions from SNP 68789 to 69389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,557 DEBUG Processing 609/857 atomic regions from SNP 182633 to 183233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,652 DEBUG Processing 245/749 atomic regions from SNP 73398 to 73998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,704 DEBUG Processing 186/706 atomic regions from SNP 55500 to 56100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,719 DEBUG Processing 231/735 atomic regions from SNP 69089 to 69689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,797 DEBUG Processing 610/857 atomic regions from SNP 182933 to 183533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,893 DEBUG Processing 246/749 atomic regions from SNP 73698 to 74298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,930 DEBUG Processing 187/706 atomic regions from SNP 55800 to 56400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,945 DEBUG Processing 232/735 atomic regions from SNP 69389 to 69989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,040 DEBUG Processing 611/857 atomic regions from SNP 183233 to 183833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,143 DEBUG Processing 247/749 atomic regions from SNP 73998 to 74598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,159 DEBUG Processing 188/706 atomic regions from SNP 56100 to 56700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,173 DEBUG Processing 233/735 atomic regions from SNP 69689 to 70289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,283 DEBUG Processing 612/857 atomic regions from SNP 183533 to 184133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,384 DEBUG Processing 248/749 atomic regions from SNP 74298 to 74898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,394 DEBUG Processing 189/706 atomic regions from SNP 56400 to 57000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,406 DEBUG Processing 234/735 atomic regions from SNP 69989 to 70589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,527 DEBUG Processing 613/857 atomic regions from SNP 183833 to 184433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,624 DEBUG Processing 249/749 atomic regions from SNP 74598 to 75198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,628 DEBUG Processing 190/706 atomic regions from SNP 56700 to 57300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,636 DEBUG Processing 235/735 atomic regions from SNP 70289 to 70889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,772 DEBUG Processing 614/857 atomic regions from SNP 184133 to 184733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,865 DEBUG Processing 191/706 atomic regions from SNP 57000 to 57600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,866 DEBUG Processing 250/749 atomic regions from SNP 74898 to 75498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,873 DEBUG Processing 236/735 atomic regions from SNP 70589 to 71189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,013 DEBUG Processing 615/857 atomic regions from SNP 184433 to 185033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,105 DEBUG Processing 192/706 atomic regions from SNP 57300 to 57900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,110 DEBUG Processing 237/735 atomic regions from SNP 70889 to 71489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,112 DEBUG Processing 251/749 atomic regions from SNP 75198 to 75798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,256 DEBUG Processing 616/857 atomic regions from SNP 184733 to 185333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,352 DEBUG Processing 238/735 atomic regions from SNP 71189 to 71789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,355 DEBUG Processing 193/706 atomic regions from SNP 57600 to 58200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,362 DEBUG Processing 252/749 atomic regions from SNP 75498 to 76098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,495 DEBUG Processing 617/857 atomic regions from SNP 185033 to 185633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,592 DEBUG Processing 239/735 atomic regions from SNP 71489 to 72089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,600 DEBUG Processing 194/706 atomic regions from SNP 57900 to 58500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,603 DEBUG Processing 253/749 atomic regions from SNP 75798 to 76398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,730 DEBUG Processing 618/857 atomic regions from SNP 185333 to 185933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,835 DEBUG Processing 240/735 atomic regions from SNP 71789 to 72389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,841 DEBUG Processing 254/749 atomic regions from SNP 76098 to 76698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,847 DEBUG Processing 195/706 atomic regions from SNP 58200 to 58800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,960 DEBUG Processing 619/857 atomic regions from SNP 185633 to 186233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,076 DEBUG Processing 241/735 atomic regions from SNP 72089 to 72689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,083 DEBUG Processing 255/749 atomic regions from SNP 76398 to 76998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,091 DEBUG Processing 196/706 atomic regions from SNP 58500 to 59100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,194 DEBUG Processing 620/857 atomic regions from SNP 185933 to 186533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,313 DEBUG Processing 242/735 atomic regions from SNP 72389 to 72989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,321 DEBUG Processing 256/749 atomic regions from SNP 76698 to 77298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,333 DEBUG Processing 197/706 atomic regions from SNP 58800 to 59400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,448 DEBUG Processing 621/857 atomic regions from SNP 186233 to 186833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,553 DEBUG Processing 243/735 atomic regions from SNP 72689 to 73289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,562 DEBUG Processing 257/749 atomic regions from SNP 76998 to 77598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,580 DEBUG Processing 198/706 atomic regions from SNP 59100 to 59700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,687 DEBUG Processing 622/857 atomic regions from SNP 186533 to 187133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,792 DEBUG Processing 244/735 atomic regions from SNP 72989 to 73589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,802 DEBUG Processing 258/749 atomic regions from SNP 77298 to 77898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,824 DEBUG Processing 199/706 atomic regions from SNP 59400 to 60000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,927 DEBUG Processing 623/857 atomic regions from SNP 186833 to 187433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,027 DEBUG Processing 245/735 atomic regions from SNP 73289 to 73889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,044 DEBUG Processing 259/749 atomic regions from SNP 77598 to 78198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,068 DEBUG Processing 200/706 atomic regions from SNP 59700 to 60300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,174 DEBUG Processing 624/857 atomic regions from SNP 187133 to 187733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,272 DEBUG Processing 246/735 atomic regions from SNP 73589 to 74189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,280 DEBUG Processing 260/749 atomic regions from SNP 77898 to 78498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,308 DEBUG Processing 201/706 atomic regions from SNP 60000 to 60600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,421 DEBUG Processing 625/857 atomic regions from SNP 187433 to 188033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,519 DEBUG Processing 261/749 atomic regions from SNP 78198 to 78798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,526 DEBUG Processing 247/735 atomic regions from SNP 73889 to 74489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,543 DEBUG Processing 202/706 atomic regions from SNP 60300 to 60900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,671 DEBUG Processing 626/857 atomic regions from SNP 187733 to 188333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,762 DEBUG Processing 262/749 atomic regions from SNP 78498 to 79098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,764 DEBUG Processing 248/735 atomic regions from SNP 74189 to 74789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,783 DEBUG Processing 203/706 atomic regions from SNP 60600 to 61200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,919 DEBUG Processing 627/857 atomic regions from SNP 188033 to 188633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,997 DEBUG Processing 249/735 atomic regions from SNP 74489 to 75089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,009 DEBUG Processing 263/749 atomic regions from SNP 78798 to 79398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,015 DEBUG Processing 204/706 atomic regions from SNP 60900 to 61500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,159 DEBUG Processing 628/857 atomic regions from SNP 188333 to 188933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,233 DEBUG Processing 250/735 atomic regions from SNP 74789 to 75389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,252 DEBUG Processing 264/749 atomic regions from SNP 79098 to 79698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,254 DEBUG Processing 205/706 atomic regions from SNP 61200 to 61800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,398 DEBUG Processing 629/857 atomic regions from SNP 188633 to 189233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,476 DEBUG Processing 251/735 atomic regions from SNP 75089 to 75689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,484 DEBUG Processing 206/706 atomic regions from SNP 61500 to 62100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,489 DEBUG Processing 265/749 atomic regions from SNP 79398 to 79998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,627 DEBUG Processing 630/857 atomic regions from SNP 188933 to 189533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,709 DEBUG Processing 252/735 atomic regions from SNP 75389 to 75989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,722 DEBUG Processing 207/706 atomic regions from SNP 61800 to 62400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,735 DEBUG Processing 266/749 atomic regions from SNP 79698 to 80298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,854 DEBUG Processing 631/857 atomic regions from SNP 189233 to 189833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,955 DEBUG Processing 253/735 atomic regions from SNP 75689 to 76289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,956 DEBUG Processing 208/706 atomic regions from SNP 62100 to 62700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,976 DEBUG Processing 267/749 atomic regions from SNP 79998 to 80598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,083 DEBUG Processing 632/857 atomic regions from SNP 189533 to 190133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,191 DEBUG Processing 209/706 atomic regions from SNP 62400 to 63000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,203 DEBUG Processing 254/735 atomic regions from SNP 75989 to 76589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,223 DEBUG Processing 268/749 atomic regions from SNP 80298 to 80898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,322 DEBUG Processing 633/857 atomic regions from SNP 189833 to 190433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,429 DEBUG Processing 210/706 atomic regions from SNP 62700 to 63300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,441 DEBUG Processing 255/735 atomic regions from SNP 76289 to 76889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,467 DEBUG Processing 269/749 atomic regions from SNP 80598 to 81198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,563 DEBUG Processing 634/857 atomic regions from SNP 190133 to 190733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,667 DEBUG Processing 211/706 atomic regions from SNP 63000 to 63600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,680 DEBUG Processing 256/735 atomic regions from SNP 76589 to 77189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,714 DEBUG Processing 270/749 atomic regions from SNP 80898 to 81498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,807 DEBUG Processing 635/857 atomic regions from SNP 190433 to 191033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,899 DEBUG Processing 212/706 atomic regions from SNP 63300 to 63900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,911 DEBUG Processing 257/735 atomic regions from SNP 76889 to 77489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,960 DEBUG Processing 271/749 atomic regions from SNP 81198 to 81798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,049 DEBUG Processing 636/857 atomic regions from SNP 190733 to 191333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,119 DEBUG Processing 213/706 atomic regions from SNP 63600 to 64200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,134 DEBUG Processing 258/735 atomic regions from SNP 77189 to 77789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,224 DEBUG Processing 272/749 atomic regions from SNP 81498 to 82098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,304 DEBUG Processing 637/857 atomic regions from SNP 191033 to 191633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,367 DEBUG Processing 214/706 atomic regions from SNP 63900 to 64500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,367 DEBUG Processing 259/735 atomic regions from SNP 77489 to 78089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,476 DEBUG Processing 273/749 atomic regions from SNP 81798 to 82398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,557 DEBUG Processing 638/857 atomic regions from SNP 191333 to 191933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,595 DEBUG Processing 260/735 atomic regions from SNP 77789 to 78389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,597 DEBUG Processing 215/706 atomic regions from SNP 64200 to 64800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,718 DEBUG Processing 274/749 atomic regions from SNP 82098 to 82698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,811 DEBUG Processing 639/857 atomic regions from SNP 191633 to 192233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,828 DEBUG Processing 261/735 atomic regions from SNP 78089 to 78689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,834 DEBUG Processing 216/706 atomic regions from SNP 64500 to 65100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,957 DEBUG Processing 275/749 atomic regions from SNP 82398 to 82998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,063 DEBUG Processing 640/857 atomic regions from SNP 191933 to 192533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,067 DEBUG Processing 262/735 atomic regions from SNP 78389 to 78989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,073 DEBUG Processing 217/706 atomic regions from SNP 64800 to 65400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,194 DEBUG Processing 276/749 atomic regions from SNP 82698 to 83298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,311 DEBUG Processing 263/735 atomic regions from SNP 78689 to 79289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,320 DEBUG Processing 641/857 atomic regions from SNP 192233 to 192833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,339 DEBUG Processing 218/706 atomic regions from SNP 65100 to 65700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,431 DEBUG Processing 277/749 atomic regions from SNP 82998 to 83598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,556 DEBUG Processing 264/735 atomic regions from SNP 78989 to 79589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,576 DEBUG Processing 642/857 atomic regions from SNP 192533 to 193133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,613 DEBUG Processing 219/706 atomic regions from SNP 65400 to 66000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,676 DEBUG Processing 278/749 atomic regions from SNP 83298 to 83898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,791 DEBUG Processing 265/735 atomic regions from SNP 79289 to 79889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,842 DEBUG Processing 643/857 atomic regions from SNP 192833 to 193433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,849 DEBUG Processing 220/706 atomic regions from SNP 65700 to 66300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,913 DEBUG Processing 279/749 atomic regions from SNP 83598 to 84198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,031 DEBUG Processing 266/735 atomic regions from SNP 79589 to 80189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,088 DEBUG Processing 221/706 atomic regions from SNP 66000 to 66600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,122 DEBUG Processing 644/857 atomic regions from SNP 193133 to 193733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,150 DEBUG Processing 280/749 atomic regions from SNP 83898 to 84498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,268 DEBUG Processing 267/735 atomic regions from SNP 79889 to 80489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,323 DEBUG Processing 222/706 atomic regions from SNP 66300 to 66900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,390 DEBUG Processing 281/749 atomic regions from SNP 84198 to 84798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,392 DEBUG Processing 645/857 atomic regions from SNP 193433 to 194033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,502 DEBUG Processing 268/735 atomic regions from SNP 80189 to 80789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,562 DEBUG Processing 223/706 atomic regions from SNP 66600 to 67200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,629 DEBUG Processing 282/749 atomic regions from SNP 84498 to 85098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,677 DEBUG Processing 646/857 atomic regions from SNP 193733 to 194333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,746 DEBUG Processing 269/735 atomic regions from SNP 80489 to 81089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,798 DEBUG Processing 224/706 atomic regions from SNP 66900 to 67500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,873 DEBUG Processing 283/749 atomic regions from SNP 84798 to 85398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,965 DEBUG Processing 647/857 atomic regions from SNP 194033 to 194633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,989 DEBUG Processing 270/735 atomic regions from SNP 80789 to 81389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,039 DEBUG Processing 225/706 atomic regions from SNP 67200 to 67800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,117 DEBUG Processing 284/749 atomic regions from SNP 85098 to 85698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,230 DEBUG Processing 271/735 atomic regions from SNP 81089 to 81689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,246 DEBUG Processing 648/857 atomic regions from SNP 194333 to 194933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,279 DEBUG Processing 226/706 atomic regions from SNP 67500 to 68100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,357 DEBUG Processing 285/749 atomic regions from SNP 85398 to 85998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,470 DEBUG Processing 272/735 atomic regions from SNP 81389 to 81989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,517 DEBUG Processing 649/857 atomic regions from SNP 194633 to 195233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,518 DEBUG Processing 227/706 atomic regions from SNP 67800 to 68400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,592 DEBUG Processing 286/749 atomic regions from SNP 85698 to 86298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,708 DEBUG Processing 273/735 atomic regions from SNP 81689 to 82289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,761 DEBUG Processing 228/706 atomic regions from SNP 68100 to 68700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,771 DEBUG Processing 650/857 atomic regions from SNP 194933 to 195533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,834 DEBUG Processing 287/749 atomic regions from SNP 85998 to 86598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,952 DEBUG Processing 274/735 atomic regions from SNP 81989 to 82589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,005 DEBUG Processing 229/706 atomic regions from SNP 68400 to 69000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,024 DEBUG Processing 651/857 atomic regions from SNP 195233 to 195833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,077 DEBUG Processing 288/749 atomic regions from SNP 86298 to 86898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,197 DEBUG Processing 275/735 atomic regions from SNP 82289 to 82889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,249 DEBUG Processing 230/706 atomic regions from SNP 68700 to 69300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,277 DEBUG Processing 652/857 atomic regions from SNP 195533 to 196133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,316 DEBUG Processing 289/749 atomic regions from SNP 86598 to 87198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,442 DEBUG Processing 276/735 atomic regions from SNP 82589 to 83189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,503 DEBUG Processing 231/706 atomic regions from SNP 69000 to 69600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,529 DEBUG Processing 653/857 atomic regions from SNP 195833 to 196433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,556 DEBUG Processing 290/749 atomic regions from SNP 86898 to 87498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,683 DEBUG Processing 277/735 atomic regions from SNP 82889 to 83489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,774 DEBUG Processing 232/706 atomic regions from SNP 69300 to 69900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,783 DEBUG Processing 654/857 atomic regions from SNP 196133 to 196733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,796 DEBUG Processing 291/749 atomic regions from SNP 87198 to 87798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,925 DEBUG Processing 278/735 atomic regions from SNP 83189 to 83789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,017 DEBUG Processing 233/706 atomic regions from SNP 69600 to 70200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,038 DEBUG Processing 292/749 atomic regions from SNP 87498 to 88098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,042 DEBUG Processing 655/857 atomic regions from SNP 196433 to 197033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,168 DEBUG Processing 279/735 atomic regions from SNP 83489 to 84089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,259 DEBUG Processing 234/706 atomic regions from SNP 69900 to 70500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,278 DEBUG Processing 293/749 atomic regions from SNP 87798 to 88398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,291 DEBUG Processing 656/857 atomic regions from SNP 196733 to 197333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,409 DEBUG Processing 280/735 atomic regions from SNP 83789 to 84389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,503 DEBUG Processing 235/706 atomic regions from SNP 70200 to 70800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,521 DEBUG Processing 294/749 atomic regions from SNP 88098 to 88698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,541 DEBUG Processing 657/857 atomic regions from SNP 197033 to 197633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,653 DEBUG Processing 281/735 atomic regions from SNP 84089 to 84689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,752 DEBUG Processing 236/706 atomic regions from SNP 70500 to 71100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,765 DEBUG Processing 295/749 atomic regions from SNP 88398 to 88998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,794 DEBUG Processing 658/857 atomic regions from SNP 197333 to 197933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,895 DEBUG Processing 282/735 atomic regions from SNP 84389 to 84989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,998 DEBUG Processing 237/706 atomic regions from SNP 70800 to 71400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,004 DEBUG Processing 296/749 atomic regions from SNP 88698 to 89298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,067 DEBUG Processing 659/857 atomic regions from SNP 197633 to 198233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,130 DEBUG Processing 283/735 atomic regions from SNP 84689 to 85289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,242 DEBUG Processing 297/749 atomic regions from SNP 88998 to 89598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,268 DEBUG Processing 238/706 atomic regions from SNP 71100 to 71700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,349 DEBUG Processing 660/857 atomic regions from SNP 197933 to 198533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,384 DEBUG Processing 284/735 atomic regions from SNP 84989 to 85589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,487 DEBUG Processing 298/749 atomic regions from SNP 89298 to 89898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,528 DEBUG Processing 239/706 atomic regions from SNP 71400 to 72000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,618 DEBUG Processing 285/735 atomic regions from SNP 85289 to 85889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,642 DEBUG Processing 661/857 atomic regions from SNP 198233 to 198833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,728 DEBUG Processing 299/749 atomic regions from SNP 89598 to 90198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,774 DEBUG Processing 240/706 atomic regions from SNP 71700 to 72300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,856 DEBUG Processing 286/735 atomic regions from SNP 85589 to 86189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,921 DEBUG Processing 662/857 atomic regions from SNP 198533 to 199133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,981 DEBUG Processing 300/749 atomic regions from SNP 89898 to 90498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,032 DEBUG Processing 241/706 atomic regions from SNP 72000 to 72600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,102 DEBUG Processing 287/735 atomic regions from SNP 85889 to 86489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,179 DEBUG Processing 663/857 atomic regions from SNP 198833 to 199433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,233 DEBUG Processing 301/749 atomic regions from SNP 90198 to 90798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,287 DEBUG Processing 242/706 atomic regions from SNP 72300 to 72900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,341 DEBUG Processing 288/735 atomic regions from SNP 86189 to 86789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,441 DEBUG Processing 664/857 atomic regions from SNP 199133 to 199733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,479 DEBUG Processing 302/749 atomic regions from SNP 90498 to 91098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,569 DEBUG Processing 243/706 atomic regions from SNP 72600 to 73200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,589 DEBUG Processing 289/735 atomic regions from SNP 86489 to 87089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,690 DEBUG Processing 665/857 atomic regions from SNP 199433 to 200033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,723 DEBUG Processing 303/749 atomic regions from SNP 90798 to 91398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,823 DEBUG Processing 244/706 atomic regions from SNP 72900 to 73500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,834 DEBUG Processing 290/735 atomic regions from SNP 86789 to 87389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,942 DEBUG Processing 666/857 atomic regions from SNP 199733 to 200333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,965 DEBUG Processing 304/749 atomic regions from SNP 91098 to 91698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,070 DEBUG Processing 245/706 atomic regions from SNP 73200 to 73800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,079 DEBUG Processing 291/735 atomic regions from SNP 87089 to 87689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,200 DEBUG Processing 667/857 atomic regions from SNP 200033 to 200633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,205 DEBUG Processing 305/749 atomic regions from SNP 91398 to 91998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,319 DEBUG Processing 246/706 atomic regions from SNP 73500 to 74100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,322 DEBUG Processing 292/735 atomic regions from SNP 87389 to 87989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,446 DEBUG Processing 306/749 atomic regions from SNP 91698 to 92298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,451 DEBUG Processing 668/857 atomic regions from SNP 200333 to 200933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,568 DEBUG Processing 247/706 atomic regions from SNP 73800 to 74400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,571 DEBUG Processing 293/735 atomic regions from SNP 87689 to 88289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,692 DEBUG Processing 307/749 atomic regions from SNP 91998 to 92598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,705 DEBUG Processing 669/857 atomic regions from SNP 200633 to 201233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,810 DEBUG Processing 294/735 atomic regions from SNP 87989 to 88589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,813 DEBUG Processing 248/706 atomic regions from SNP 74100 to 74700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,938 DEBUG Processing 308/749 atomic regions from SNP 92298 to 92898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,957 DEBUG Processing 670/857 atomic regions from SNP 200933 to 201533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,053 DEBUG Processing 295/735 atomic regions from SNP 88289 to 88889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,058 DEBUG Processing 249/706 atomic regions from SNP 74400 to 75000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,184 DEBUG Processing 309/749 atomic regions from SNP 92598 to 93198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,209 DEBUG Processing 671/857 atomic regions from SNP 201233 to 201833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,296 DEBUG Processing 296/735 atomic regions from SNP 88589 to 89189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,302 DEBUG Processing 250/706 atomic regions from SNP 74700 to 75300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,432 DEBUG Processing 310/749 atomic regions from SNP 92898 to 93498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,477 DEBUG Processing 672/857 atomic regions from SNP 201533 to 202133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,543 DEBUG Processing 297/735 atomic regions from SNP 88889 to 89489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,552 DEBUG Processing 251/706 atomic regions from SNP 75000 to 75600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,686 DEBUG Processing 311/749 atomic regions from SNP 93198 to 93798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,768 DEBUG Processing 673/857 atomic regions from SNP 201833 to 202433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,789 DEBUG Processing 298/735 atomic regions from SNP 89189 to 89789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,799 DEBUG Processing 252/706 atomic regions from SNP 75300 to 75900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,932 DEBUG Processing 312/749 atomic regions from SNP 93498 to 94098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,031 DEBUG Processing 674/857 atomic regions from SNP 202133 to 202733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,032 DEBUG Processing 299/735 atomic regions from SNP 89489 to 90089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,045 DEBUG Processing 253/706 atomic regions from SNP 75600 to 76200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,180 DEBUG Processing 313/749 atomic regions from SNP 93798 to 94398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,276 DEBUG Processing 300/735 atomic regions from SNP 89789 to 90389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,289 DEBUG Processing 675/857 atomic regions from SNP 202433 to 203033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,292 DEBUG Processing 254/706 atomic regions from SNP 75900 to 76500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,422 DEBUG Processing 314/749 atomic regions from SNP 94098 to 94698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,519 DEBUG Processing 301/735 atomic regions from SNP 90089 to 90689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,537 DEBUG Processing 255/706 atomic regions from SNP 76200 to 76800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,547 DEBUG Processing 676/857 atomic regions from SNP 202733 to 203333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,664 DEBUG Processing 315/749 atomic regions from SNP 94398 to 94998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,760 DEBUG Processing 302/735 atomic regions from SNP 90389 to 90989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,781 DEBUG Processing 256/706 atomic regions from SNP 76500 to 77100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,802 DEBUG Processing 677/857 atomic regions from SNP 203033 to 203633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,909 DEBUG Processing 316/749 atomic regions from SNP 94698 to 95298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,005 DEBUG Processing 303/735 atomic regions from SNP 90689 to 91289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,028 DEBUG Processing 257/706 atomic regions from SNP 76800 to 77400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,061 DEBUG Processing 678/857 atomic regions from SNP 203333 to 203933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,153 DEBUG Processing 317/749 atomic regions from SNP 94998 to 95598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,248 DEBUG Processing 304/735 atomic regions from SNP 90989 to 91589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,271 DEBUG Processing 258/706 atomic regions from SNP 77100 to 77700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,317 DEBUG Processing 679/857 atomic regions from SNP 203633 to 204233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,398 DEBUG Processing 318/749 atomic regions from SNP 95298 to 95898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,491 DEBUG Processing 305/735 atomic regions from SNP 91289 to 91889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,514 DEBUG Processing 259/706 atomic regions from SNP 77400 to 78000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,572 DEBUG Processing 680/857 atomic regions from SNP 203933 to 204533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,644 DEBUG Processing 319/749 atomic regions from SNP 95598 to 96198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,732 DEBUG Processing 306/735 atomic regions from SNP 91589 to 92189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,759 DEBUG Processing 260/706 atomic regions from SNP 77700 to 78300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,848 DEBUG Processing 681/857 atomic regions from SNP 204233 to 204833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,912 DEBUG Processing 320/749 atomic regions from SNP 95898 to 96498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,986 DEBUG Processing 307/735 atomic regions from SNP 91889 to 92489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,007 DEBUG Processing 261/706 atomic regions from SNP 78000 to 78600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,128 DEBUG Processing 682/857 atomic regions from SNP 204533 to 205133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,165 DEBUG Processing 321/749 atomic regions from SNP 96198 to 96798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,250 DEBUG Processing 262/706 atomic regions from SNP 78300 to 78900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,252 DEBUG Processing 308/735 atomic regions from SNP 92189 to 92789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,418 DEBUG Processing 322/749 atomic regions from SNP 96498 to 97098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,419 DEBUG Processing 683/857 atomic regions from SNP 204833 to 205433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,500 DEBUG Processing 263/706 atomic regions from SNP 78600 to 79200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,505 DEBUG Processing 309/735 atomic regions from SNP 92489 to 93089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,671 DEBUG Processing 323/749 atomic regions from SNP 96798 to 97398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,679 DEBUG Processing 684/857 atomic regions from SNP 205133 to 205733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,746 DEBUG Processing 264/706 atomic regions from SNP 78900 to 79500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,748 DEBUG Processing 310/735 atomic regions from SNP 92789 to 93389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,920 DEBUG Processing 324/749 atomic regions from SNP 97098 to 97698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,934 DEBUG Processing 685/857 atomic regions from SNP 205433 to 206033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,992 DEBUG Processing 311/735 atomic regions from SNP 93089 to 93689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,995 DEBUG Processing 265/706 atomic regions from SNP 79200 to 79800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,166 DEBUG Processing 325/749 atomic regions from SNP 97398 to 97998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,199 DEBUG Processing 686/857 atomic regions from SNP 205733 to 206333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,236 DEBUG Processing 312/735 atomic regions from SNP 93389 to 93989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,244 DEBUG Processing 266/706 atomic regions from SNP 79500 to 80100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,440 DEBUG Processing 326/749 atomic regions from SNP 97698 to 98298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,488 DEBUG Processing 313/735 atomic regions from SNP 93689 to 94289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,490 DEBUG Processing 687/857 atomic regions from SNP 206033 to 206633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,502 DEBUG Processing 267/706 atomic regions from SNP 79800 to 80400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,687 DEBUG Processing 327/749 atomic regions from SNP 97998 to 98598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,729 DEBUG Processing 314/735 atomic regions from SNP 93989 to 94589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,745 DEBUG Processing 268/706 atomic regions from SNP 80100 to 80700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,764 DEBUG Processing 688/857 atomic regions from SNP 206333 to 206933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,930 DEBUG Processing 328/749 atomic regions from SNP 98298 to 98898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,969 DEBUG Processing 315/735 atomic regions from SNP 94289 to 94889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,001 DEBUG Processing 269/706 atomic regions from SNP 80400 to 81000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,035 DEBUG Processing 689/857 atomic regions from SNP 206633 to 207233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,192 DEBUG Processing 329/749 atomic regions from SNP 98598 to 99198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,208 DEBUG Processing 316/735 atomic regions from SNP 94589 to 95189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,244 DEBUG Processing 270/706 atomic regions from SNP 80700 to 81300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,322 DEBUG Processing 690/857 atomic regions from SNP 206933 to 207533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,450 DEBUG Processing 317/735 atomic regions from SNP 94889 to 95489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,472 DEBUG Processing 330/749 atomic regions from SNP 98898 to 99498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,484 DEBUG Processing 271/706 atomic regions from SNP 81000 to 81600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,600 DEBUG Processing 691/857 atomic regions from SNP 207233 to 207833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,704 DEBUG Processing 318/735 atomic regions from SNP 95189 to 95789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,729 DEBUG Processing 272/706 atomic regions from SNP 81300 to 81900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,749 DEBUG Processing 331/749 atomic regions from SNP 99198 to 99798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,890 DEBUG Processing 692/857 atomic regions from SNP 207533 to 208133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,952 DEBUG Processing 319/735 atomic regions from SNP 95489 to 96089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,975 DEBUG Processing 273/706 atomic regions from SNP 81600 to 82200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,016 DEBUG Processing 332/749 atomic regions from SNP 99498 to 100098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,178 DEBUG Processing 693/857 atomic regions from SNP 207833 to 208433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,201 DEBUG Processing 320/735 atomic regions from SNP 95789 to 96389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,224 DEBUG Processing 274/706 atomic regions from SNP 81900 to 82500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,267 DEBUG Processing 333/749 atomic regions from SNP 99798 to 100398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,446 DEBUG Processing 321/735 atomic regions from SNP 96089 to 96689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,454 DEBUG Processing 694/857 atomic regions from SNP 208133 to 208733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,475 DEBUG Processing 275/706 atomic regions from SNP 82200 to 82800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,524 DEBUG Processing 334/749 atomic regions from SNP 100098 to 100698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,695 DEBUG Processing 322/735 atomic regions from SNP 96389 to 96989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,721 DEBUG Processing 695/857 atomic regions from SNP 208433 to 209033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,737 DEBUG Processing 276/706 atomic regions from SNP 82500 to 83100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,781 DEBUG Processing 335/749 atomic regions from SNP 100398 to 100998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,939 DEBUG Processing 323/735 atomic regions from SNP 96689 to 97289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,984 DEBUG Processing 696/857 atomic regions from SNP 208733 to 209333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,013 DEBUG Processing 277/706 atomic regions from SNP 82800 to 83400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,035 DEBUG Processing 336/749 atomic regions from SNP 100698 to 101298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,177 DEBUG Processing 324/735 atomic regions from SNP 96989 to 97589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,247 DEBUG Processing 697/857 atomic regions from SNP 209033 to 209633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,270 DEBUG Processing 278/706 atomic regions from SNP 83100 to 83700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,292 DEBUG Processing 337/749 atomic regions from SNP 100998 to 101598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,409 DEBUG Processing 325/735 atomic regions from SNP 97289 to 97889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,504 DEBUG Processing 698/857 atomic regions from SNP 209333 to 209933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,524 DEBUG Processing 279/706 atomic regions from SNP 83400 to 84000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,549 DEBUG Processing 338/749 atomic regions from SNP 101298 to 101898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,641 DEBUG Processing 326/735 atomic regions from SNP 97589 to 98189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,769 DEBUG Processing 699/857 atomic regions from SNP 209633 to 210233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,773 DEBUG Processing 280/706 atomic regions from SNP 83700 to 84300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,818 DEBUG Processing 339/749 atomic regions from SNP 101598 to 102198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,900 DEBUG Processing 327/735 atomic regions from SNP 97889 to 98489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,017 DEBUG Processing 281/706 atomic regions from SNP 84000 to 84600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,048 DEBUG Processing 700/857 atomic regions from SNP 209933 to 210533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,098 DEBUG Processing 340/749 atomic regions from SNP 101898 to 102498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,182 DEBUG Processing 328/735 atomic regions from SNP 98189 to 98789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,279 DEBUG Processing 282/706 atomic regions from SNP 84300 to 84900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,312 DEBUG Processing 701/857 atomic regions from SNP 210233 to 210833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,371 DEBUG Processing 341/749 atomic regions from SNP 102198 to 102798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,426 DEBUG Processing 329/735 atomic regions from SNP 98489 to 99089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,523 DEBUG Processing 283/706 atomic regions from SNP 84600 to 85200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,580 DEBUG Processing 702/857 atomic regions from SNP 210533 to 211133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,631 DEBUG Processing 342/749 atomic regions from SNP 102498 to 103098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,671 DEBUG Processing 330/735 atomic regions from SNP 98789 to 99389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,771 DEBUG Processing 284/706 atomic regions from SNP 84900 to 85500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,873 DEBUG Processing 703/857 atomic regions from SNP 210833 to 211433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,881 DEBUG Processing 343/749 atomic regions from SNP 102798 to 103398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,920 DEBUG Processing 331/735 atomic regions from SNP 99089 to 99689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,022 DEBUG Processing 285/706 atomic regions from SNP 85200 to 85800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,128 DEBUG Processing 704/857 atomic regions from SNP 211133 to 211733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,141 DEBUG Processing 344/749 atomic regions from SNP 103098 to 103698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,163 DEBUG Processing 332/735 atomic regions from SNP 99389 to 99989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,276 DEBUG Processing 286/706 atomic regions from SNP 85500 to 86100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,384 DEBUG Processing 705/857 atomic regions from SNP 211433 to 212033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,408 DEBUG Processing 333/735 atomic regions from SNP 99689 to 100289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,425 DEBUG Processing 345/749 atomic regions from SNP 103398 to 103998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,526 DEBUG Processing 287/706 atomic regions from SNP 85800 to 86400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,642 DEBUG Processing 706/857 atomic regions from SNP 211733 to 212333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,656 DEBUG Processing 334/735 atomic regions from SNP 99989 to 100589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,702 DEBUG Processing 346/749 atomic regions from SNP 103698 to 104298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,781 DEBUG Processing 288/706 atomic regions from SNP 86100 to 86700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,897 DEBUG Processing 707/857 atomic regions from SNP 212033 to 212633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,902 DEBUG Processing 335/735 atomic regions from SNP 100289 to 100889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,981 DEBUG Processing 347/749 atomic regions from SNP 103998 to 104598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,040 DEBUG Processing 289/706 atomic regions from SNP 86400 to 87000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,141 DEBUG Processing 336/735 atomic regions from SNP 100589 to 101189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,154 DEBUG Processing 708/857 atomic regions from SNP 212333 to 212933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,246 DEBUG Processing 348/749 atomic regions from SNP 104298 to 104898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,309 DEBUG Processing 290/706 atomic regions from SNP 86700 to 87300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,389 DEBUG Processing 337/735 atomic regions from SNP 100889 to 101489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,417 DEBUG Processing 709/857 atomic regions from SNP 212633 to 213233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,508 DEBUG Processing 349/749 atomic regions from SNP 104598 to 105198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,572 DEBUG Processing 291/706 atomic regions from SNP 87000 to 87600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,637 DEBUG Processing 338/735 atomic regions from SNP 101189 to 101789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,690 DEBUG Processing 710/857 atomic regions from SNP 212933 to 213533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,770 DEBUG Processing 350/749 atomic regions from SNP 104898 to 105498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,813 DEBUG Processing 292/706 atomic regions from SNP 87300 to 87900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,883 DEBUG Processing 339/735 atomic regions from SNP 101489 to 102089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,969 DEBUG Processing 711/857 atomic regions from SNP 213233 to 213833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,035 DEBUG Processing 351/749 atomic regions from SNP 105198 to 105798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,061 DEBUG Processing 293/706 atomic regions from SNP 87600 to 88200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,123 DEBUG Processing 340/735 atomic regions from SNP 101789 to 102389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,260 DEBUG Processing 712/857 atomic regions from SNP 213533 to 214133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,312 DEBUG Processing 294/706 atomic regions from SNP 87900 to 88500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,316 DEBUG Processing 352/749 atomic regions from SNP 105498 to 106098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,367 DEBUG Processing 341/735 atomic regions from SNP 102089 to 102689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,555 DEBUG Processing 713/857 atomic regions from SNP 213833 to 214433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,564 DEBUG Processing 295/706 atomic regions from SNP 88200 to 88800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,577 DEBUG Processing 353/749 atomic regions from SNP 105798 to 106398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,618 DEBUG Processing 342/735 atomic regions from SNP 102389 to 102989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,821 DEBUG Processing 296/706 atomic regions from SNP 88500 to 89100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,830 DEBUG Processing 354/749 atomic regions from SNP 106098 to 106698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,857 DEBUG Processing 714/857 atomic regions from SNP 214133 to 214733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,870 DEBUG Processing 343/735 atomic regions from SNP 102689 to 103289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,073 DEBUG Processing 297/706 atomic regions from SNP 88800 to 89400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,082 DEBUG Processing 355/749 atomic regions from SNP 106398 to 106998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,120 DEBUG Processing 344/735 atomic regions from SNP 102989 to 103589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,155 DEBUG Processing 715/857 atomic regions from SNP 214433 to 215033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,321 DEBUG Processing 298/706 atomic regions from SNP 89100 to 89700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,335 DEBUG Processing 356/749 atomic regions from SNP 106698 to 107298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,370 DEBUG Processing 345/735 atomic regions from SNP 103289 to 103889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,432 DEBUG Processing 716/857 atomic regions from SNP 214733 to 215333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,571 DEBUG Processing 299/706 atomic regions from SNP 89400 to 90000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,588 DEBUG Processing 357/749 atomic regions from SNP 106998 to 107598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,614 DEBUG Processing 346/735 atomic regions from SNP 103589 to 104189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,708 DEBUG Processing 717/857 atomic regions from SNP 215033 to 215633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,823 DEBUG Processing 300/706 atomic regions from SNP 89700 to 90300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,839 DEBUG Processing 358/749 atomic regions from SNP 107298 to 107898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,859 DEBUG Processing 347/735 atomic regions from SNP 103889 to 104489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,969 DEBUG Processing 718/857 atomic regions from SNP 215333 to 215933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,074 DEBUG Processing 301/706 atomic regions from SNP 90000 to 90600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,085 DEBUG Processing 359/749 atomic regions from SNP 107598 to 108198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,105 DEBUG Processing 348/735 atomic regions from SNP 104189 to 104789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,224 DEBUG Processing 719/857 atomic regions from SNP 215633 to 216233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,327 DEBUG Processing 302/706 atomic regions from SNP 90300 to 90900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,333 DEBUG Processing 360/749 atomic regions from SNP 107898 to 108498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,353 DEBUG Processing 349/735 atomic regions from SNP 104489 to 105089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,479 DEBUG Processing 720/857 atomic regions from SNP 215933 to 216533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,578 DEBUG Processing 303/706 atomic regions from SNP 90600 to 91200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,583 DEBUG Processing 361/749 atomic regions from SNP 108198 to 108798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,602 DEBUG Processing 350/735 atomic regions from SNP 104789 to 105389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,743 DEBUG Processing 721/857 atomic regions from SNP 216233 to 216833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,835 DEBUG Processing 362/749 atomic regions from SNP 108498 to 109098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,835 DEBUG Processing 304/706 atomic regions from SNP 90900 to 91500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,851 DEBUG Processing 351/735 atomic regions from SNP 105089 to 105689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,997 DEBUG Processing 722/857 atomic regions from SNP 216533 to 217133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,085 DEBUG Processing 363/749 atomic regions from SNP 108798 to 109398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,092 DEBUG Processing 305/706 atomic regions from SNP 91200 to 91800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,098 DEBUG Processing 352/735 atomic regions from SNP 105389 to 105989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,253 DEBUG Processing 723/857 atomic regions from SNP 216833 to 217433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,334 DEBUG Processing 364/749 atomic regions from SNP 109098 to 109698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,345 DEBUG Processing 306/706 atomic regions from SNP 91500 to 92100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,349 DEBUG Processing 353/735 atomic regions from SNP 105689 to 106289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,509 DEBUG Processing 724/857 atomic regions from SNP 217133 to 217733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,583 DEBUG Processing 365/749 atomic regions from SNP 109398 to 109998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,598 DEBUG Processing 307/706 atomic regions from SNP 91800 to 92400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,605 DEBUG Processing 354/735 atomic regions from SNP 105989 to 106589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,770 DEBUG Processing 725/857 atomic regions from SNP 217433 to 218033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,840 DEBUG Processing 366/749 atomic regions from SNP 109698 to 110298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,870 DEBUG Processing 355/735 atomic regions from SNP 106289 to 106889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,877 DEBUG Processing 308/706 atomic regions from SNP 92100 to 92700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,030 DEBUG Processing 726/857 atomic regions from SNP 217733 to 218333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,087 DEBUG Processing 367/749 atomic regions from SNP 109998 to 110598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,120 DEBUG Processing 356/735 atomic regions from SNP 106589 to 107189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,128 DEBUG Processing 309/706 atomic regions from SNP 92400 to 93000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,290 DEBUG Processing 727/857 atomic regions from SNP 218033 to 218633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,351 DEBUG Processing 368/749 atomic regions from SNP 110298 to 110898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,391 DEBUG Processing 357/735 atomic regions from SNP 106889 to 107489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,397 DEBUG Processing 310/706 atomic regions from SNP 92700 to 93300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,554 DEBUG Processing 728/857 atomic regions from SNP 218333 to 218933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,608 DEBUG Processing 369/749 atomic regions from SNP 110598 to 111198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,651 DEBUG Processing 358/735 atomic regions from SNP 107189 to 107789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,687 DEBUG Processing 311/706 atomic regions from SNP 93000 to 93600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,826 DEBUG Processing 729/857 atomic regions from SNP 218633 to 219233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,855 DEBUG Processing 370/749 atomic regions from SNP 110898 to 111498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,904 DEBUG Processing 359/735 atomic regions from SNP 107489 to 108089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,953 DEBUG Processing 312/706 atomic regions from SNP 93300 to 93900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,100 DEBUG Processing 371/749 atomic regions from SNP 111198 to 111798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,101 DEBUG Processing 730/857 atomic regions from SNP 218933 to 219533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,155 DEBUG Processing 360/735 atomic regions from SNP 107789 to 108389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,213 DEBUG Processing 313/706 atomic regions from SNP 93600 to 94200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,345 DEBUG Processing 372/749 atomic regions from SNP 111498 to 112098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,359 DEBUG Processing 731/857 atomic regions from SNP 219233 to 219833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,409 DEBUG Processing 361/735 atomic regions from SNP 108089 to 108689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,480 DEBUG Processing 314/706 atomic regions from SNP 93900 to 94500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,593 DEBUG Processing 373/749 atomic regions from SNP 111798 to 112398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,615 DEBUG Processing 732/857 atomic regions from SNP 219533 to 220133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,664 DEBUG Processing 362/735 atomic regions from SNP 108389 to 108989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,739 DEBUG Processing 315/706 atomic regions from SNP 94200 to 94800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,835 DEBUG Processing 374/749 atomic regions from SNP 112098 to 112698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,865 DEBUG Processing 733/857 atomic regions from SNP 219833 to 220433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,910 DEBUG Processing 363/735 atomic regions from SNP 108689 to 109289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,016 DEBUG Processing 316/706 atomic regions from SNP 94500 to 95100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,076 DEBUG Processing 375/749 atomic regions from SNP 112398 to 112998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,119 DEBUG Processing 734/857 atomic regions from SNP 220133 to 220733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,155 DEBUG Processing 364/735 atomic regions from SNP 108989 to 109589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,298 DEBUG Processing 317/706 atomic regions from SNP 94800 to 95400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,320 DEBUG Processing 376/749 atomic regions from SNP 112698 to 113298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,402 DEBUG Processing 365/735 atomic regions from SNP 109289 to 109889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,410 DEBUG Processing 735/857 atomic regions from SNP 220433 to 221033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,566 DEBUG Processing 377/749 atomic regions from SNP 112998 to 113598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,582 DEBUG Processing 318/706 atomic regions from SNP 95100 to 95700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,646 DEBUG Processing 366/735 atomic regions from SNP 109589 to 110189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,688 DEBUG Processing 736/857 atomic regions from SNP 220733 to 221333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,764 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:51:15,810 DEBUG Processing 378/749 atomic regions from SNP 113298 to 113898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,839 DEBUG Processing 319/706 atomic regions from SNP 95400 to 96000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,891 DEBUG Processing 367/735 atomic regions from SNP 109889 to 110489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,969 DEBUG Processing 737/857 atomic regions from SNP 221033 to 221633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,054 DEBUG Processing 379/749 atomic regions from SNP 113598 to 114198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,089 DEBUG Processing 320/706 atomic regions from SNP 95700 to 96300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,132 DEBUG Processing 368/735 atomic regions from SNP 110189 to 110789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,258 DEBUG Processing 738/857 atomic regions from SNP 221333 to 221933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,296 DEBUG Processing 380/749 atomic regions from SNP 113898 to 114498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,346 DEBUG Processing 321/706 atomic regions from SNP 96000 to 96600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,371 DEBUG Processing 369/735 atomic regions from SNP 110489 to 111089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,520 DEBUG Processing 739/857 atomic regions from SNP 221633 to 222233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,546 DEBUG Processing 381/749 atomic regions from SNP 114198 to 114798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,612 DEBUG Processing 370/735 atomic regions from SNP 110789 to 111389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,615 DEBUG Processing 322/706 atomic regions from SNP 96300 to 96900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,778 DEBUG Processing 740/857 atomic regions from SNP 221933 to 222533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,795 DEBUG Processing 382/749 atomic regions from SNP 114498 to 115098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,850 DEBUG Processing 371/735 atomic regions from SNP 111089 to 111689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,860 DEBUG Processing 323/706 atomic regions from SNP 96600 to 97200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,039 DEBUG Processing 741/857 atomic regions from SNP 222233 to 222833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,045 DEBUG Processing 383/749 atomic regions from SNP 114798 to 115398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,089 DEBUG Processing 372/735 atomic regions from SNP 111389 to 111989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,105 DEBUG Processing 324/706 atomic regions from SNP 96900 to 97500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,300 DEBUG Processing 384/749 atomic regions from SNP 115098 to 115698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,307 DEBUG Processing 742/857 atomic regions from SNP 222533 to 223133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,339 DEBUG Processing 373/735 atomic regions from SNP 111689 to 112289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,357 DEBUG Processing 325/706 atomic regions from SNP 97200 to 97800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,546 DEBUG Processing 385/749 atomic regions from SNP 115398 to 115998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,564 DEBUG Processing 743/857 atomic regions from SNP 222833 to 223433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,579 DEBUG Processing 374/735 atomic regions from SNP 111989 to 112589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,599 DEBUG Processing 326/706 atomic regions from SNP 97500 to 98100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,787 DEBUG Processing 386/749 atomic regions from SNP 115698 to 116298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,823 DEBUG Processing 375/735 atomic regions from SNP 112289 to 112889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,826 DEBUG Processing 744/857 atomic regions from SNP 223133 to 223733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,848 DEBUG Processing 327/706 atomic regions from SNP 97800 to 98400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,029 DEBUG Processing 387/749 atomic regions from SNP 115998 to 116598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,075 DEBUG Processing 376/735 atomic regions from SNP 112589 to 113189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,088 DEBUG Processing 745/857 atomic regions from SNP 223433 to 224033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,095 DEBUG Processing 328/706 atomic regions from SNP 98100 to 98700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,271 DEBUG Processing 388/749 atomic regions from SNP 116298 to 116898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,323 DEBUG Processing 377/735 atomic regions from SNP 112889 to 113489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,348 DEBUG Processing 746/857 atomic regions from SNP 223733 to 224333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,348 DEBUG Processing 329/706 atomic regions from SNP 98400 to 99000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,519 DEBUG Processing 389/749 atomic regions from SNP 116598 to 117198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,595 DEBUG Processing 378/735 atomic regions from SNP 113189 to 113789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,602 DEBUG Processing 330/706 atomic regions from SNP 98700 to 99300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,614 DEBUG Processing 747/857 atomic regions from SNP 224033 to 224633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,771 DEBUG Processing 390/749 atomic regions from SNP 116898 to 117498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,856 DEBUG Processing 331/706 atomic regions from SNP 99000 to 99600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,871 DEBUG Processing 379/735 atomic regions from SNP 113489 to 114089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,876 DEBUG Processing 748/857 atomic regions from SNP 224333 to 224933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,036 DEBUG Processing 391/749 atomic regions from SNP 117198 to 117798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,108 DEBUG Processing 332/706 atomic regions from SNP 99300 to 99900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,138 DEBUG Processing 749/857 atomic regions from SNP 224633 to 225233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,150 DEBUG Processing 380/735 atomic regions from SNP 113789 to 114389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,295 DEBUG Processing 392/749 atomic regions from SNP 117498 to 118098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,354 DEBUG Processing 333/706 atomic regions from SNP 99600 to 100200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,397 DEBUG Processing 750/857 atomic regions from SNP 224933 to 225533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,426 DEBUG Processing 381/735 atomic regions from SNP 114089 to 114689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,542 DEBUG Processing 393/749 atomic regions from SNP 117798 to 118398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,599 DEBUG Processing 334/706 atomic regions from SNP 99900 to 100500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,662 DEBUG Processing 751/857 atomic regions from SNP 225233 to 225833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,706 DEBUG Processing 382/735 atomic regions from SNP 114389 to 114989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,788 DEBUG Processing 394/749 atomic regions from SNP 118098 to 118698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,848 DEBUG Processing 335/706 atomic regions from SNP 100200 to 100800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,921 DEBUG Processing 752/857 atomic regions from SNP 225533 to 226133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,990 DEBUG Processing 383/735 atomic regions from SNP 114689 to 115289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,048 DEBUG Processing 395/749 atomic regions from SNP 118398 to 118998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,100 DEBUG Processing 336/706 atomic regions from SNP 100500 to 101100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,178 DEBUG Processing 753/857 atomic regions from SNP 225833 to 226433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,268 DEBUG Processing 384/735 atomic regions from SNP 114989 to 115589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,303 DEBUG Processing 396/749 atomic regions from SNP 118698 to 119298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,358 DEBUG Processing 337/706 atomic regions from SNP 100800 to 101400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,431 DEBUG Processing 754/857 atomic regions from SNP 226133 to 226733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,521 DEBUG Processing 385/735 atomic regions from SNP 115289 to 115889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,549 DEBUG Processing 397/749 atomic regions from SNP 118998 to 119598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,605 DEBUG Processing 338/706 atomic regions from SNP 101100 to 101700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,687 DEBUG Processing 755/857 atomic regions from SNP 226433 to 227033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,760 DEBUG Processing 386/735 atomic regions from SNP 115589 to 116189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,790 DEBUG Processing 398/749 atomic regions from SNP 119298 to 119898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,888 DEBUG Processing 339/706 atomic regions from SNP 101400 to 102000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,946 DEBUG Processing 756/857 atomic regions from SNP 226733 to 227333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,035 DEBUG Processing 387/735 atomic regions from SNP 115889 to 116489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,055 DEBUG Processing 399/749 atomic regions from SNP 119598 to 120198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,163 DEBUG Processing 340/706 atomic regions from SNP 101700 to 102300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,207 DEBUG Processing 757/857 atomic regions from SNP 227033 to 227633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,295 DEBUG Processing 400/749 atomic regions from SNP 119898 to 120498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,309 DEBUG Processing 388/735 atomic regions from SNP 116189 to 116789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,415 DEBUG Processing 341/706 atomic regions from SNP 102000 to 102600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,477 DEBUG Processing 758/857 atomic regions from SNP 227333 to 227933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,548 DEBUG Processing 401/749 atomic regions from SNP 120198 to 120798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,564 DEBUG Processing 389/735 atomic regions from SNP 116489 to 117089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,664 DEBUG Processing 342/706 atomic regions from SNP 102300 to 102900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,740 DEBUG Processing 759/857 atomic regions from SNP 227633 to 228233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,800 DEBUG Processing 402/749 atomic regions from SNP 120498 to 121098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,804 DEBUG Processing 390/735 atomic regions from SNP 116789 to 117389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,919 DEBUG Processing 343/706 atomic regions from SNP 102600 to 103200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,008 DEBUG Processing 760/857 atomic regions from SNP 227933 to 228533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,048 DEBUG Processing 403/749 atomic regions from SNP 120798 to 121398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,049 DEBUG Processing 391/735 atomic regions from SNP 117089 to 117689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,181 DEBUG Processing 344/706 atomic regions from SNP 102900 to 103500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,274 DEBUG Processing 761/857 atomic regions from SNP 228233 to 228833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,297 DEBUG Processing 404/749 atomic regions from SNP 121098 to 121698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,307 DEBUG Processing 392/735 atomic regions from SNP 117389 to 117989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,418 DEBUG Processing 345/706 atomic regions from SNP 103200 to 103800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,535 DEBUG Processing 762/857 atomic regions from SNP 228533 to 229133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,548 DEBUG Processing 405/749 atomic regions from SNP 121398 to 121998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,578 DEBUG Processing 393/735 atomic regions from SNP 117689 to 118289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,653 DEBUG Processing 346/706 atomic regions from SNP 103500 to 104100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,798 DEBUG Processing 406/749 atomic regions from SNP 121698 to 122298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,799 DEBUG Processing 763/857 atomic regions from SNP 228833 to 229433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,862 DEBUG Processing 394/735 atomic regions from SNP 117989 to 118589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,898 DEBUG Processing 347/706 atomic regions from SNP 103800 to 104400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,051 DEBUG Processing 407/749 atomic regions from SNP 121998 to 122598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,066 DEBUG Processing 764/857 atomic regions from SNP 229133 to 229733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,111 DEBUG Processing 395/735 atomic regions from SNP 118289 to 118889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,145 DEBUG Processing 348/706 atomic regions from SNP 104100 to 104700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,296 DEBUG Processing 408/749 atomic regions from SNP 122298 to 122898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,325 DEBUG Processing 765/857 atomic regions from SNP 229433 to 230033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,371 DEBUG Processing 396/735 atomic regions from SNP 118589 to 119189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,387 DEBUG Processing 349/706 atomic regions from SNP 104400 to 105000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,537 DEBUG Processing 409/749 atomic regions from SNP 122598 to 123198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,585 DEBUG Processing 766/857 atomic regions from SNP 229733 to 230333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,615 DEBUG Processing 397/735 atomic regions from SNP 118889 to 119489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,630 DEBUG Processing 350/706 atomic regions from SNP 104700 to 105300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,778 DEBUG Processing 410/749 atomic regions from SNP 122898 to 123498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,846 DEBUG Processing 767/857 atomic regions from SNP 230033 to 230633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,863 DEBUG Processing 398/735 atomic regions from SNP 119189 to 119789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,882 DEBUG Processing 351/706 atomic regions from SNP 105000 to 105600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,018 DEBUG Processing 411/749 atomic regions from SNP 123198 to 123798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,115 DEBUG Processing 399/735 atomic regions from SNP 119489 to 120089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,117 DEBUG Processing 768/857 atomic regions from SNP 230333 to 230933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,135 DEBUG Processing 352/706 atomic regions from SNP 105300 to 105900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,259 DEBUG Processing 412/749 atomic regions from SNP 123498 to 124098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,364 DEBUG Processing 400/735 atomic regions from SNP 119789 to 120389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,390 DEBUG Processing 353/706 atomic regions from SNP 105600 to 106200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,390 DEBUG Processing 769/857 atomic regions from SNP 230633 to 231233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,502 DEBUG Processing 413/749 atomic regions from SNP 123798 to 124398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,612 DEBUG Processing 401/735 atomic regions from SNP 120089 to 120689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,640 DEBUG Processing 354/706 atomic regions from SNP 105900 to 106500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,686 DEBUG Processing 770/857 atomic regions from SNP 230933 to 231533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,743 DEBUG Processing 414/749 atomic regions from SNP 124098 to 124698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,859 DEBUG Processing 402/735 atomic regions from SNP 120389 to 120989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,893 DEBUG Processing 355/706 atomic regions from SNP 106200 to 106800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,968 DEBUG Processing 771/857 atomic regions from SNP 231233 to 231833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,992 DEBUG Processing 415/749 atomic regions from SNP 124398 to 124998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,109 DEBUG Processing 403/735 atomic regions from SNP 120689 to 121289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,152 DEBUG Processing 356/706 atomic regions from SNP 106500 to 107100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,240 DEBUG Processing 416/749 atomic regions from SNP 124698 to 125298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,255 DEBUG Processing 772/857 atomic regions from SNP 231533 to 232133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,351 DEBUG Processing 404/735 atomic regions from SNP 120989 to 121589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,398 DEBUG Processing 357/706 atomic regions from SNP 106800 to 107400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,483 DEBUG Processing 417/749 atomic regions from SNP 124998 to 125598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,509 DEBUG Processing 773/857 atomic regions from SNP 231833 to 232433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,593 DEBUG Processing 405/735 atomic regions from SNP 121289 to 121889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,647 DEBUG Processing 358/706 atomic regions from SNP 107100 to 107700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,724 DEBUG Processing 418/749 atomic regions from SNP 125298 to 125898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,761 DEBUG Processing 774/857 atomic regions from SNP 232133 to 232733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,836 DEBUG Processing 406/735 atomic regions from SNP 121589 to 122189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,896 DEBUG Processing 359/706 atomic regions from SNP 107400 to 108000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,962 DEBUG Processing 419/749 atomic regions from SNP 125598 to 126198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,011 DEBUG Processing 775/857 atomic regions from SNP 232433 to 233033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,097 DEBUG Processing 407/735 atomic regions from SNP 121889 to 122489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,144 DEBUG Processing 360/706 atomic regions from SNP 107700 to 108300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,198 DEBUG Processing 420/749 atomic regions from SNP 125898 to 126498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,261 DEBUG Processing 776/857 atomic regions from SNP 232733 to 233333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,363 DEBUG Processing 408/735 atomic regions from SNP 122189 to 122789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,397 DEBUG Processing 361/706 atomic regions from SNP 108000 to 108600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,444 DEBUG Processing 421/749 atomic regions from SNP 126198 to 126798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,523 DEBUG Processing 777/857 atomic regions from SNP 233033 to 233633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,609 DEBUG Processing 409/735 atomic regions from SNP 122489 to 123089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,644 DEBUG Processing 362/706 atomic regions from SNP 108300 to 108900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,679 DEBUG Processing 422/749 atomic regions from SNP 126498 to 127098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,778 DEBUG Processing 778/857 atomic regions from SNP 233333 to 233933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,848 DEBUG Processing 410/735 atomic regions from SNP 122789 to 123389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,899 DEBUG Processing 363/706 atomic regions from SNP 108600 to 109200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,922 DEBUG Processing 423/749 atomic regions from SNP 126798 to 127398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,032 DEBUG Processing 779/857 atomic regions from SNP 233633 to 234233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,089 DEBUG Processing 411/735 atomic regions from SNP 123089 to 123689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,146 DEBUG Processing 364/706 atomic regions from SNP 108900 to 109500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,180 DEBUG Processing 424/749 atomic regions from SNP 127098 to 127698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,311 DEBUG Processing 780/857 atomic regions from SNP 233933 to 234533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,331 DEBUG Processing 412/735 atomic regions from SNP 123389 to 123989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,392 DEBUG Processing 365/706 atomic regions from SNP 109200 to 109800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,460 DEBUG Processing 425/749 atomic regions from SNP 127398 to 127998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,578 DEBUG Processing 413/735 atomic regions from SNP 123689 to 124289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,583 DEBUG Processing 781/857 atomic regions from SNP 234233 to 234833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,644 DEBUG Processing 366/706 atomic regions from SNP 109500 to 110100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,732 DEBUG Processing 426/749 atomic regions from SNP 127698 to 128298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,824 DEBUG Processing 414/735 atomic regions from SNP 123989 to 124589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,877 DEBUG Processing 782/857 atomic regions from SNP 234533 to 235133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,899 DEBUG Processing 367/706 atomic regions from SNP 109800 to 110400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,002 DEBUG Processing 427/749 atomic regions from SNP 127998 to 128598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,122 DEBUG Processing 415/735 atomic regions from SNP 124289 to 124889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,187 DEBUG Processing 368/706 atomic regions from SNP 110100 to 110700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,192 DEBUG Processing 783/857 atomic regions from SNP 234833 to 235433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,246 DEBUG Processing 428/749 atomic regions from SNP 128298 to 128898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,364 DEBUG Processing 416/735 atomic regions from SNP 124589 to 125189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,435 DEBUG Processing 369/706 atomic regions from SNP 110400 to 111000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,451 DEBUG Processing 784/857 atomic regions from SNP 235133 to 235733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,502 DEBUG Processing 429/749 atomic regions from SNP 128598 to 129198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,608 DEBUG Processing 417/735 atomic regions from SNP 124889 to 125489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,688 DEBUG Processing 370/706 atomic regions from SNP 110700 to 111300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,714 DEBUG Processing 785/857 atomic regions from SNP 235433 to 236033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,773 DEBUG Processing 430/749 atomic regions from SNP 128898 to 129498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,862 DEBUG Processing 418/735 atomic regions from SNP 125189 to 125789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,939 DEBUG Processing 371/706 atomic regions from SNP 111000 to 111600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,975 DEBUG Processing 786/857 atomic regions from SNP 235733 to 236333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,020 DEBUG Processing 431/749 atomic regions from SNP 129198 to 129798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,110 DEBUG Processing 419/735 atomic regions from SNP 125489 to 126089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,196 DEBUG Processing 372/706 atomic regions from SNP 111300 to 111900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,232 DEBUG Processing 787/857 atomic regions from SNP 236033 to 236633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,268 DEBUG Processing 432/749 atomic regions from SNP 129498 to 130098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,354 DEBUG Processing 420/735 atomic regions from SNP 125789 to 126389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,448 DEBUG Processing 373/706 atomic regions from SNP 111600 to 112200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,492 DEBUG Processing 788/857 atomic regions from SNP 236333 to 236933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,539 DEBUG Processing 433/749 atomic regions from SNP 129798 to 130398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,601 DEBUG Processing 421/735 atomic regions from SNP 126089 to 126689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,713 DEBUG Processing 374/706 atomic regions from SNP 111900 to 112500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,753 DEBUG Processing 789/857 atomic regions from SNP 236633 to 237233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,812 DEBUG Processing 434/749 atomic regions from SNP 130098 to 130698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,851 DEBUG Processing 422/735 atomic regions from SNP 126389 to 126989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,868 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:51:29,869 DEBUG chr14: Signal quantile: 0.994. signal threshold: 13. Best RMSEA: 0.019 2025-01-31 09:51:29,985 DEBUG Processing 375/706 atomic regions from SNP 112200 to 112800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,022 DEBUG Processing 790/857 atomic regions from SNP 236933 to 237533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,080 DEBUG Processing 435/749 atomic regions from SNP 130398 to 130998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,108 DEBUG Processing 423/735 atomic regions from SNP 126689 to 127289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,239 DEBUG Processing 376/706 atomic regions from SNP 112500 to 113100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,286 DEBUG Processing 791/857 atomic regions from SNP 237233 to 237833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,355 DEBUG Processing 436/749 atomic regions from SNP 130698 to 131298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,357 DEBUG Processing 424/735 atomic regions from SNP 126989 to 127589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,481 DEBUG Processing 377/706 atomic regions from SNP 112800 to 113400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,543 DEBUG Processing 792/857 atomic regions from SNP 237533 to 238133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,605 DEBUG Processing 425/735 atomic regions from SNP 127289 to 127889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,621 DEBUG Processing 437/749 atomic regions from SNP 130998 to 131598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,721 DEBUG Processing 378/706 atomic regions from SNP 113100 to 113700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,804 DEBUG Processing 793/857 atomic regions from SNP 237833 to 238433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,855 DEBUG Processing 426/735 atomic regions from SNP 127589 to 128189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,887 DEBUG Processing 438/749 atomic regions from SNP 131298 to 131898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,964 DEBUG Processing 379/706 atomic regions from SNP 113400 to 114000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,063 DEBUG Processing 794/857 atomic regions from SNP 238133 to 238733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,107 DEBUG Processing 427/735 atomic regions from SNP 127889 to 128489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,155 DEBUG Processing 439/749 atomic regions from SNP 131598 to 132198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,210 DEBUG Processing 380/706 atomic regions from SNP 113700 to 114300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,323 DEBUG Processing 795/857 atomic regions from SNP 238433 to 239033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,357 DEBUG Processing 428/735 atomic regions from SNP 128189 to 128789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,433 DEBUG Processing 440/749 atomic regions from SNP 131898 to 132498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,463 DEBUG Processing 381/706 atomic regions from SNP 114000 to 114600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,579 DEBUG Processing 796/857 atomic regions from SNP 238733 to 239333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,601 DEBUG Processing 429/735 atomic regions from SNP 128489 to 129089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,700 DEBUG Processing 441/749 atomic regions from SNP 132198 to 132798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,709 DEBUG Processing 382/706 atomic regions from SNP 114300 to 114900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,843 DEBUG Processing 797/857 atomic regions from SNP 239033 to 239633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,850 DEBUG Processing 430/735 atomic regions from SNP 128789 to 129389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,953 DEBUG Processing 383/706 atomic regions from SNP 114600 to 115200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,960 DEBUG Processing 442/749 atomic regions from SNP 132498 to 133098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,100 DEBUG Processing 431/735 atomic regions from SNP 129089 to 129689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,106 DEBUG Processing 798/857 atomic regions from SNP 239333 to 239933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,200 DEBUG Processing 384/706 atomic regions from SNP 114900 to 115500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,203 DEBUG Processing 443/749 atomic regions from SNP 132798 to 133398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,343 DEBUG chr14 total SNP count: 201321 2025-01-31 09:51:32,344 DEBUG chr14 length: 124902244 2025-01-31 09:51:32,344 DEBUG ----------------------------------------- 2025-01-31 09:51:32,344 INFO Processing SNPs in chr14 2025-01-31 09:51:32,352 DEBUG Processing 432/735 atomic regions from SNP 129389 to 129989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,374 DEBUG Processing 799/857 atomic regions from SNP 239633 to 240233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,450 DEBUG Processing 444/749 atomic regions from SNP 133098 to 133698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,451 DEBUG Processing 385/706 atomic regions from SNP 115200 to 115800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,599 DEBUG Processing 433/735 atomic regions from SNP 129689 to 130289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,637 DEBUG Processing 800/857 atomic regions from SNP 239933 to 240533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,668 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 168), (168, 201321)] 2025-01-31 09:51:32,696 DEBUG Processing 445/749 atomic regions from SNP 133398 to 133998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,707 DEBUG Processing 386/706 atomic regions from SNP 115500 to 116100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,757 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:32,779 DEBUG Segmenting atomic regions: 2025-01-31 09:51:32,855 DEBUG Processing 434/735 atomic regions from SNP 129989 to 130589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,869 DEBUG Processing 1/1 atomic regions from SNP 0 to 167 for chr14 (subchromosome 1 of 2). 2025-01-31 09:51:32,878 DEBUG Unique SNPs positions in subchromosome 1: 168 2025-01-31 09:51:32,879 DEBUG Subchromosome time: 0.12188342201989144, subchromosome SNPs: 168 2025-01-31 09:51:32,898 DEBUG Processing 801/857 atomic regions from SNP 240233 to 240833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,932 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:32,945 DEBUG Processing 446/749 atomic regions from SNP 133698 to 134298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,964 DEBUG Processing 387/706 atomic regions from SNP 115800 to 116400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,119 DEBUG Processing 435/735 atomic regions from SNP 130289 to 130889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,155 DEBUG Processing 802/857 atomic regions from SNP 240533 to 241133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,192 DEBUG Processing 447/749 atomic regions from SNP 133998 to 134598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,238 DEBUG Processing 388/706 atomic regions from SNP 116100 to 116700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,356 DEBUG Processing 436/735 atomic regions from SNP 130589 to 131189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,408 DEBUG Processing 803/857 atomic regions from SNP 240833 to 241433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,466 DEBUG Processing 448/749 atomic regions from SNP 134298 to 134898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,485 DEBUG Processing 389/706 atomic regions from SNP 116400 to 117000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,601 DEBUG Processing 437/735 atomic regions from SNP 130889 to 131489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,664 DEBUG Processing 804/857 atomic regions from SNP 241133 to 241733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,727 DEBUG Processing 390/706 atomic regions from SNP 116700 to 117300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,744 DEBUG Processing 449/749 atomic regions from SNP 134598 to 135198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,849 DEBUG Processing 438/735 atomic regions from SNP 131189 to 131789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,922 DEBUG Processing 805/857 atomic regions from SNP 241433 to 242033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,980 DEBUG Processing 391/706 atomic regions from SNP 117000 to 117600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,018 DEBUG Processing 450/749 atomic regions from SNP 134898 to 135498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,096 DEBUG Processing 439/735 atomic regions from SNP 131489 to 132089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,182 DEBUG Processing 806/857 atomic regions from SNP 241733 to 242333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,231 DEBUG Processing 392/706 atomic regions from SNP 117300 to 117900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,290 DEBUG Processing 451/749 atomic regions from SNP 135198 to 135798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,348 DEBUG Processing 440/735 atomic regions from SNP 131789 to 132389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,450 DEBUG Processing 807/857 atomic regions from SNP 242033 to 242633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,482 DEBUG Processing 393/706 atomic regions from SNP 117600 to 118200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,566 DEBUG Processing 452/749 atomic regions from SNP 135498 to 136098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,590 DEBUG Processing 441/735 atomic regions from SNP 132089 to 132689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,715 DEBUG Processing 808/857 atomic regions from SNP 242333 to 242933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,733 DEBUG Processing 394/706 atomic regions from SNP 117900 to 118500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,841 DEBUG Processing 453/749 atomic regions from SNP 135798 to 136398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,849 DEBUG Processing 442/735 atomic regions from SNP 132389 to 132989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,981 DEBUG Processing 809/857 atomic regions from SNP 242633 to 243233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,991 DEBUG Processing 395/706 atomic regions from SNP 118200 to 118800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,093 DEBUG Processing 443/735 atomic regions from SNP 132689 to 133289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,121 DEBUG Processing 454/749 atomic regions from SNP 136098 to 136698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,240 DEBUG Processing 396/706 atomic regions from SNP 118500 to 119100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,241 DEBUG Processing 810/857 atomic regions from SNP 242933 to 243533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,336 DEBUG Processing 444/735 atomic regions from SNP 132989 to 133589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,396 DEBUG Processing 455/749 atomic regions from SNP 136398 to 136998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,492 DEBUG Processing 397/706 atomic regions from SNP 118800 to 119400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,499 DEBUG Processing 811/857 atomic regions from SNP 243233 to 243833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,578 DEBUG Processing 445/735 atomic regions from SNP 133289 to 133889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,666 DEBUG Processing 456/749 atomic regions from SNP 136698 to 137298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,739 DEBUG Processing 398/706 atomic regions from SNP 119100 to 119700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,757 DEBUG Processing 812/857 atomic regions from SNP 243533 to 244133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,818 DEBUG Processing 446/735 atomic regions from SNP 133589 to 134189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,940 DEBUG Processing 457/749 atomic regions from SNP 136998 to 137598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,989 DEBUG Processing 399/706 atomic regions from SNP 119400 to 120000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,017 DEBUG Processing 813/857 atomic regions from SNP 243833 to 244433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,059 DEBUG Processing 447/735 atomic regions from SNP 133889 to 134489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,219 DEBUG Processing 458/749 atomic regions from SNP 137298 to 137898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,247 DEBUG Processing 400/706 atomic regions from SNP 119700 to 120300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,283 DEBUG Processing 814/857 atomic regions from SNP 244133 to 244733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,306 DEBUG Processing 448/735 atomic regions from SNP 134189 to 134789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,501 DEBUG Processing 401/706 atomic regions from SNP 120000 to 120600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,503 DEBUG Processing 459/749 atomic regions from SNP 137598 to 138198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,544 DEBUG Processing 815/857 atomic regions from SNP 244433 to 245033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,551 DEBUG Processing 449/735 atomic regions from SNP 134489 to 135089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,741 DEBUG Processing 402/706 atomic regions from SNP 120300 to 120900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,774 DEBUG Processing 460/749 atomic regions from SNP 137898 to 138498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,800 DEBUG Processing 450/735 atomic regions from SNP 134789 to 135389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,802 DEBUG Processing 816/857 atomic regions from SNP 244733 to 245333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,986 DEBUG Processing 403/706 atomic regions from SNP 120600 to 121200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,043 DEBUG Processing 461/749 atomic regions from SNP 138198 to 138798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,048 DEBUG Processing 451/735 atomic regions from SNP 135089 to 135689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,065 DEBUG Processing 817/857 atomic regions from SNP 245033 to 245633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,220 DEBUG Processing 404/706 atomic regions from SNP 120900 to 121500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,292 DEBUG Processing 462/749 atomic regions from SNP 138498 to 139098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,298 DEBUG Processing 452/735 atomic regions from SNP 135389 to 135989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,344 DEBUG Processing 818/857 atomic regions from SNP 245333 to 245933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,461 DEBUG Processing 405/706 atomic regions from SNP 121200 to 121800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,547 DEBUG Processing 463/749 atomic regions from SNP 138798 to 139398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,550 DEBUG Processing 453/735 atomic regions from SNP 135689 to 136289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,616 DEBUG Processing 819/857 atomic regions from SNP 245633 to 246233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,713 DEBUG Processing 406/706 atomic regions from SNP 121500 to 122100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,788 DEBUG Processing 464/749 atomic regions from SNP 139098 to 139698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,792 DEBUG Processing 454/735 atomic regions from SNP 135989 to 136589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,881 DEBUG Processing 820/857 atomic regions from SNP 245933 to 246533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,960 DEBUG Processing 407/706 atomic regions from SNP 121800 to 122400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,032 DEBUG Processing 455/735 atomic regions from SNP 136289 to 136889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,048 DEBUG Processing 465/749 atomic regions from SNP 139398 to 139998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,141 DEBUG Processing 821/857 atomic regions from SNP 246233 to 246833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,207 DEBUG Processing 408/706 atomic regions from SNP 122100 to 122700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,267 DEBUG Processing 456/735 atomic regions from SNP 136589 to 137189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,315 DEBUG Processing 466/749 atomic regions from SNP 139698 to 140298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,398 DEBUG Processing 822/857 atomic regions from SNP 246533 to 247133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,452 DEBUG Processing 409/706 atomic regions from SNP 122400 to 123000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,500 DEBUG Processing 457/735 atomic regions from SNP 136889 to 137489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,549 DEBUG Processing 467/749 atomic regions from SNP 139998 to 140598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,651 DEBUG Processing 823/857 atomic regions from SNP 246833 to 247433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,701 DEBUG Processing 410/706 atomic regions from SNP 122700 to 123300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,763 DEBUG Processing 458/735 atomic regions from SNP 137189 to 137789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,787 DEBUG Processing 468/749 atomic regions from SNP 140298 to 140898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,901 DEBUG Processing 824/857 atomic regions from SNP 247133 to 247733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,944 DEBUG Processing 411/706 atomic regions from SNP 123000 to 123600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,025 DEBUG Processing 459/735 atomic regions from SNP 137489 to 138089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,028 DEBUG Processing 469/749 atomic regions from SNP 140598 to 141198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,153 DEBUG Processing 825/857 atomic regions from SNP 247433 to 248033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,187 DEBUG Processing 412/706 atomic regions from SNP 123300 to 123900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,267 DEBUG Processing 470/749 atomic regions from SNP 140898 to 141498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,290 DEBUG Processing 460/735 atomic regions from SNP 137789 to 138389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,405 DEBUG Processing 826/857 atomic regions from SNP 247733 to 248333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,426 DEBUG Processing 413/706 atomic regions from SNP 123600 to 124200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,505 DEBUG Processing 471/749 atomic regions from SNP 141198 to 141798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,562 DEBUG Processing 461/735 atomic regions from SNP 138089 to 138689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,660 DEBUG Processing 827/857 atomic regions from SNP 248033 to 248633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,671 DEBUG Processing 414/706 atomic regions from SNP 123900 to 124500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,740 DEBUG Processing 472/749 atomic regions from SNP 141498 to 142098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,823 DEBUG Processing 462/735 atomic regions from SNP 138389 to 138989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,917 DEBUG Processing 415/706 atomic regions from SNP 124200 to 124800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,920 DEBUG Processing 828/857 atomic regions from SNP 248333 to 248933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,976 DEBUG Processing 473/749 atomic regions from SNP 141798 to 142398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,060 DEBUG Processing 463/735 atomic regions from SNP 138689 to 139289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,165 DEBUG Processing 416/706 atomic regions from SNP 124500 to 125100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,177 DEBUG Processing 829/857 atomic regions from SNP 248633 to 249233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,208 DEBUG Processing 474/749 atomic regions from SNP 142098 to 142698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,302 DEBUG Processing 464/735 atomic regions from SNP 138989 to 139589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,419 DEBUG Processing 417/706 atomic regions from SNP 124800 to 125400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,432 DEBUG Processing 830/857 atomic regions from SNP 248933 to 249533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,441 DEBUG Processing 475/749 atomic regions from SNP 142398 to 142998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,576 DEBUG Processing 465/735 atomic regions from SNP 139289 to 139889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,684 DEBUG Processing 418/706 atomic regions from SNP 125100 to 125700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,688 DEBUG Processing 476/749 atomic regions from SNP 142698 to 143298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,701 DEBUG Processing 831/857 atomic regions from SNP 249233 to 249833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,856 DEBUG Processing 466/735 atomic regions from SNP 139589 to 140189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,935 DEBUG Processing 419/706 atomic regions from SNP 125400 to 126000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,941 DEBUG Processing 477/749 atomic regions from SNP 142998 to 143598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,955 DEBUG Processing 832/857 atomic regions from SNP 249533 to 250133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,131 DEBUG Processing 467/735 atomic regions from SNP 139889 to 140489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,179 DEBUG Processing 420/706 atomic regions from SNP 125700 to 126300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,191 DEBUG Processing 478/749 atomic regions from SNP 143298 to 143898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,207 DEBUG Processing 833/857 atomic regions from SNP 249833 to 250433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,400 DEBUG Processing 468/735 atomic regions from SNP 140189 to 140789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,429 DEBUG Processing 421/706 atomic regions from SNP 126000 to 126600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,443 DEBUG Processing 479/749 atomic regions from SNP 143598 to 144198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,461 DEBUG Processing 834/857 atomic regions from SNP 250133 to 250733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,662 DEBUG Processing 469/735 atomic regions from SNP 140489 to 141089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,686 DEBUG Processing 480/749 atomic regions from SNP 143898 to 144498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,705 DEBUG Processing 422/706 atomic regions from SNP 126300 to 126900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,726 DEBUG Processing 835/857 atomic regions from SNP 250433 to 251033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,912 DEBUG Processing 470/735 atomic regions from SNP 140789 to 141389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,915 DEBUG Processing 481/749 atomic regions from SNP 144198 to 144798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,961 DEBUG Processing 423/706 atomic regions from SNP 126600 to 127200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,983 DEBUG Processing 836/857 atomic regions from SNP 250733 to 251333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,135 DEBUG Processing 482/749 atomic regions from SNP 144498 to 145098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,148 DEBUG Processing 471/735 atomic regions from SNP 141089 to 141689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,219 DEBUG Processing 424/706 atomic regions from SNP 126900 to 127500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,238 DEBUG Processing 837/857 atomic regions from SNP 251033 to 251633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,364 DEBUG Processing 483/749 atomic regions from SNP 144798 to 145398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,383 DEBUG Processing 472/735 atomic regions from SNP 141389 to 141989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,485 DEBUG Processing 425/706 atomic regions from SNP 127200 to 127800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,495 DEBUG Processing 838/857 atomic regions from SNP 251333 to 251933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,606 DEBUG Processing 484/749 atomic regions from SNP 145098 to 145698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,621 DEBUG Processing 473/735 atomic regions from SNP 141689 to 142289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,752 DEBUG Processing 839/857 atomic regions from SNP 251633 to 252233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,760 DEBUG Processing 426/706 atomic regions from SNP 127500 to 128100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,857 DEBUG Processing 485/749 atomic regions from SNP 145398 to 145998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,863 DEBUG Processing 474/735 atomic regions from SNP 141989 to 142589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,015 DEBUG Processing 840/857 atomic regions from SNP 251933 to 252533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,036 DEBUG Processing 427/706 atomic regions from SNP 127800 to 128400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,103 DEBUG Processing 486/749 atomic regions from SNP 145698 to 146298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,115 DEBUG Processing 475/735 atomic regions from SNP 142289 to 142889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,299 DEBUG Processing 841/857 atomic regions from SNP 252233 to 252833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,299 DEBUG Processing 428/706 atomic regions from SNP 128100 to 128700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,347 DEBUG Processing 487/749 atomic regions from SNP 145998 to 146598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,364 DEBUG Processing 476/735 atomic regions from SNP 142589 to 143189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,583 DEBUG Processing 842/857 atomic regions from SNP 252533 to 253133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,587 DEBUG Processing 429/706 atomic regions from SNP 128400 to 129000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,596 DEBUG Processing 488/749 atomic regions from SNP 146298 to 146898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,628 DEBUG Processing 477/735 atomic regions from SNP 142889 to 143489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,839 DEBUG Processing 843/857 atomic regions from SNP 252833 to 253433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,849 DEBUG Processing 489/749 atomic regions from SNP 146598 to 147198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,852 DEBUG Processing 430/706 atomic regions from SNP 128700 to 129300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,872 DEBUG Processing 478/735 atomic regions from SNP 143189 to 143789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,085 DEBUG Processing 490/749 atomic regions from SNP 146898 to 147498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,095 DEBUG Processing 844/857 atomic regions from SNP 253133 to 253733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,115 DEBUG Processing 479/735 atomic regions from SNP 143489 to 144089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,125 DEBUG Processing 431/706 atomic regions from SNP 129000 to 129600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,320 DEBUG Processing 491/749 atomic regions from SNP 147198 to 147798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,353 DEBUG Processing 845/857 atomic regions from SNP 253433 to 254033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,364 DEBUG Processing 480/735 atomic regions from SNP 143789 to 144389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,383 DEBUG Processing 432/706 atomic regions from SNP 129300 to 129900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,555 DEBUG Processing 492/749 atomic regions from SNP 147498 to 148098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,613 DEBUG Processing 481/735 atomic regions from SNP 144089 to 144689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,616 DEBUG Processing 846/857 atomic regions from SNP 253733 to 254333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,641 DEBUG Processing 433/706 atomic regions from SNP 129600 to 130200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,786 DEBUG Processing 493/749 atomic regions from SNP 147798 to 148398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,859 DEBUG Processing 482/735 atomic regions from SNP 144389 to 144989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,873 DEBUG Processing 847/857 atomic regions from SNP 254033 to 254633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,899 DEBUG Processing 434/706 atomic regions from SNP 129900 to 130500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,014 DEBUG Processing 494/749 atomic regions from SNP 148098 to 148698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,111 DEBUG Processing 483/735 atomic regions from SNP 144689 to 145289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,142 DEBUG Processing 848/857 atomic regions from SNP 254333 to 254933 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,157 DEBUG Processing 435/706 atomic regions from SNP 130200 to 130800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,253 DEBUG Processing 495/749 atomic regions from SNP 148398 to 148998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,364 DEBUG Processing 484/735 atomic regions from SNP 144989 to 145589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,404 DEBUG Processing 849/857 atomic regions from SNP 254633 to 255233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,410 DEBUG Processing 436/706 atomic regions from SNP 130500 to 131100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,484 DEBUG Processing 496/749 atomic regions from SNP 148698 to 149298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,618 DEBUG Processing 485/735 atomic regions from SNP 145289 to 145889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,664 DEBUG Processing 850/857 atomic regions from SNP 254933 to 255533 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,692 DEBUG Processing 437/706 atomic regions from SNP 130800 to 131400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,712 DEBUG Processing 497/749 atomic regions from SNP 148998 to 149598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,890 DEBUG Processing 486/735 atomic regions from SNP 145589 to 146189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,926 DEBUG Processing 851/857 atomic regions from SNP 255233 to 255833 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,948 DEBUG Processing 498/749 atomic regions from SNP 149298 to 149898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,968 DEBUG Processing 438/706 atomic regions from SNP 131100 to 131700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,158 DEBUG Processing 487/735 atomic regions from SNP 145889 to 146489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,190 DEBUG Processing 499/749 atomic regions from SNP 149598 to 150198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,194 DEBUG Processing 852/857 atomic regions from SNP 255533 to 256133 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,241 DEBUG Processing 439/706 atomic regions from SNP 131400 to 132000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,416 DEBUG Processing 488/735 atomic regions from SNP 146189 to 146789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,425 DEBUG Processing 500/749 atomic regions from SNP 149898 to 150498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,466 DEBUG Processing 853/857 atomic regions from SNP 255833 to 256433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,511 DEBUG Processing 440/706 atomic regions from SNP 131700 to 132300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,665 DEBUG Processing 501/749 atomic regions from SNP 150198 to 150798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,676 DEBUG Processing 489/735 atomic regions from SNP 146489 to 147089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,732 DEBUG Processing 854/857 atomic regions from SNP 256133 to 256733 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,763 DEBUG Processing 441/706 atomic regions from SNP 132000 to 132600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,910 DEBUG Processing 502/749 atomic regions from SNP 150498 to 151098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,927 DEBUG Processing 490/735 atomic regions from SNP 146789 to 147389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,019 DEBUG Processing 855/857 atomic regions from SNP 256433 to 257033 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,036 DEBUG Processing 442/706 atomic regions from SNP 132300 to 132900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,138 DEBUG Processing 503/749 atomic regions from SNP 150798 to 151398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,166 DEBUG Processing 491/735 atomic regions from SNP 147089 to 147689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,288 DEBUG Processing 856/857 atomic regions from SNP 256733 to 257333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,306 DEBUG Processing 443/706 atomic regions from SNP 132600 to 133200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,363 DEBUG Processing 504/749 atomic regions from SNP 151098 to 151698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,399 DEBUG Processing 492/735 atomic regions from SNP 147389 to 147989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,556 DEBUG Processing 857/857 atomic regions from SNP 257033 to 257633 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,558 DEBUG Processing 444/706 atomic regions from SNP 132900 to 133500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,592 DEBUG Processing 505/749 atomic regions from SNP 151398 to 151998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,631 DEBUG Processing 493/735 atomic regions from SNP 147689 to 148289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,709 DEBUG Unique SNPs positions in subchromosome 1: 257634 2025-01-31 09:51:47,818 DEBUG Processing 445/706 atomic regions from SNP 133200 to 133800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,824 DEBUG Processing 506/749 atomic regions from SNP 151698 to 152298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,871 DEBUG Processing 494/735 atomic regions from SNP 147989 to 148589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,058 DEBUG Processing 507/749 atomic regions from SNP 151998 to 152598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,088 DEBUG Processing 446/706 atomic regions from SNP 133500 to 134100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,108 DEBUG Processing 495/735 atomic regions from SNP 148289 to 148889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,298 DEBUG Processing 508/749 atomic regions from SNP 152298 to 152898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,346 DEBUG Processing 447/706 atomic regions from SNP 133800 to 134400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,355 DEBUG Processing 496/735 atomic regions from SNP 148589 to 149189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,534 DEBUG Processing 509/749 atomic regions from SNP 152598 to 153198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,601 DEBUG Processing 497/735 atomic regions from SNP 148889 to 149489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,620 DEBUG Processing 448/706 atomic regions from SNP 134100 to 134700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,768 DEBUG Processing 510/749 atomic regions from SNP 152898 to 153498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,848 DEBUG Processing 498/735 atomic regions from SNP 149189 to 149789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,875 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:51:48,882 DEBUG Processing 449/706 atomic regions from SNP 134400 to 135000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,001 DEBUG Processing 511/749 atomic regions from SNP 153198 to 153798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,099 DEBUG Processing 499/735 atomic regions from SNP 149489 to 150089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,130 DEBUG Processing 450/706 atomic regions from SNP 134700 to 135300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,232 DEBUG Processing 512/749 atomic regions from SNP 153498 to 154098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,341 DEBUG Processing 500/735 atomic regions from SNP 149789 to 150389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,374 DEBUG Processing 451/706 atomic regions from SNP 135000 to 135600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,470 DEBUG Processing 513/749 atomic regions from SNP 153798 to 154398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,585 DEBUG Processing 501/735 atomic regions from SNP 150089 to 150689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,637 DEBUG Processing 452/706 atomic regions from SNP 135300 to 135900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,702 DEBUG Processing 514/749 atomic regions from SNP 154098 to 154698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,829 DEBUG Processing 502/735 atomic regions from SNP 150389 to 150989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,881 DEBUG Processing 453/706 atomic regions from SNP 135600 to 136200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,940 DEBUG Processing 515/749 atomic regions from SNP 154398 to 154998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,067 DEBUG Processing 503/735 atomic regions from SNP 150689 to 151289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,123 DEBUG Processing 454/706 atomic regions from SNP 135900 to 136500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,199 DEBUG Processing 516/749 atomic regions from SNP 154698 to 155298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,303 DEBUG Processing 504/735 atomic regions from SNP 150989 to 151589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,363 DEBUG Processing 455/706 atomic regions from SNP 136200 to 136800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,436 DEBUG Processing 517/749 atomic regions from SNP 154998 to 155598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,543 DEBUG Processing 505/735 atomic regions from SNP 151289 to 151889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,600 DEBUG Processing 456/706 atomic regions from SNP 136500 to 137100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,664 DEBUG Processing 518/749 atomic regions from SNP 155298 to 155898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,782 DEBUG Processing 506/735 atomic regions from SNP 151589 to 152189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,842 DEBUG Processing 457/706 atomic regions from SNP 136800 to 137400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,897 DEBUG Processing 519/749 atomic regions from SNP 155598 to 156198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,020 DEBUG Processing 507/735 atomic regions from SNP 151889 to 152489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,082 DEBUG Processing 458/706 atomic regions from SNP 137100 to 137700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,130 DEBUG Processing 520/749 atomic regions from SNP 155898 to 156498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,257 DEBUG Processing 508/735 atomic regions from SNP 152189 to 152789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,333 DEBUG Processing 459/706 atomic regions from SNP 137400 to 138000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,377 DEBUG Processing 521/749 atomic regions from SNP 156198 to 156798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,503 DEBUG Processing 509/735 atomic regions from SNP 152489 to 153089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,579 DEBUG Processing 460/706 atomic regions from SNP 137700 to 138300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,613 DEBUG Processing 522/749 atomic regions from SNP 156498 to 157098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,739 DEBUG Processing 510/735 atomic regions from SNP 152789 to 153389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,828 DEBUG Processing 461/706 atomic regions from SNP 138000 to 138600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,856 DEBUG Processing 523/749 atomic regions from SNP 156798 to 157398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,975 DEBUG Processing 511/735 atomic regions from SNP 153089 to 153689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,073 DEBUG Processing 462/706 atomic regions from SNP 138300 to 138900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,092 DEBUG Processing 524/749 atomic regions from SNP 157098 to 157698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,210 DEBUG Processing 512/735 atomic regions from SNP 153389 to 153989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,314 DEBUG Processing 463/706 atomic regions from SNP 138600 to 139200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,326 DEBUG Processing 525/749 atomic regions from SNP 157398 to 157998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,440 DEBUG Processing 513/735 atomic regions from SNP 153689 to 154289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,556 DEBUG Processing 464/706 atomic regions from SNP 138900 to 139500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,557 DEBUG Processing 526/749 atomic regions from SNP 157698 to 158298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,671 DEBUG Processing 514/735 atomic regions from SNP 153989 to 154589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,788 DEBUG Processing 527/749 atomic regions from SNP 157998 to 158598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,798 DEBUG Processing 465/706 atomic regions from SNP 139200 to 139800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,908 DEBUG Processing 515/735 atomic regions from SNP 154289 to 154889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,031 DEBUG Processing 466/706 atomic regions from SNP 139500 to 140100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,032 DEBUG Processing 528/749 atomic regions from SNP 158298 to 158898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,142 DEBUG Processing 516/735 atomic regions from SNP 154589 to 155189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,266 DEBUG Processing 529/749 atomic regions from SNP 158598 to 159198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,300 DEBUG Processing 467/706 atomic regions from SNP 139800 to 140400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,382 DEBUG Processing 517/735 atomic regions from SNP 154889 to 155489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,502 DEBUG Processing 530/749 atomic regions from SNP 158898 to 159498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,544 DEBUG Processing 468/706 atomic regions from SNP 140100 to 140700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,626 DEBUG Processing 518/735 atomic regions from SNP 155189 to 155789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,734 DEBUG Processing 531/749 atomic regions from SNP 159198 to 159798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,789 DEBUG Processing 469/706 atomic regions from SNP 140400 to 141000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,869 DEBUG Processing 519/735 atomic regions from SNP 155489 to 156089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,970 DEBUG Processing 532/749 atomic regions from SNP 159498 to 160098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,027 DEBUG Processing 470/706 atomic regions from SNP 140700 to 141300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,109 DEBUG Processing 520/735 atomic regions from SNP 155789 to 156389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,216 DEBUG Processing 533/749 atomic regions from SNP 159798 to 160398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,270 DEBUG Processing 471/706 atomic regions from SNP 141000 to 141600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,347 DEBUG Processing 521/735 atomic regions from SNP 156089 to 156689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,440 DEBUG Processing 534/749 atomic regions from SNP 160098 to 160698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,506 DEBUG Processing 472/706 atomic regions from SNP 141300 to 141900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,593 DEBUG Processing 522/735 atomic regions from SNP 156389 to 156989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,668 DEBUG Processing 535/749 atomic regions from SNP 160398 to 160998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,744 DEBUG Processing 473/706 atomic regions from SNP 141600 to 142200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,849 DEBUG Processing 523/735 atomic regions from SNP 156689 to 157289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,897 DEBUG Processing 536/749 atomic regions from SNP 160698 to 161298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,977 DEBUG Processing 474/706 atomic regions from SNP 141900 to 142500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,103 DEBUG Processing 524/735 atomic regions from SNP 156989 to 157589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,126 DEBUG Processing 537/749 atomic regions from SNP 160998 to 161598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,208 DEBUG Processing 475/706 atomic regions from SNP 142200 to 142800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,338 DEBUG Processing 525/735 atomic regions from SNP 157289 to 157889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,355 DEBUG Processing 538/749 atomic regions from SNP 161298 to 161898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,435 DEBUG Processing 476/706 atomic regions from SNP 142500 to 143100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,597 DEBUG Processing 526/735 atomic regions from SNP 157589 to 158189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,600 DEBUG Processing 539/749 atomic regions from SNP 161598 to 162198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,685 DEBUG Processing 477/706 atomic regions from SNP 142800 to 143400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,831 DEBUG Processing 540/749 atomic regions from SNP 161898 to 162498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,846 DEBUG Processing 527/735 atomic regions from SNP 157889 to 158489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,917 DEBUG Processing 478/706 atomic regions from SNP 143100 to 143700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,070 DEBUG Processing 541/749 atomic regions from SNP 162198 to 162798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,123 DEBUG Processing 528/735 atomic regions from SNP 158189 to 158789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,163 DEBUG Processing 479/706 atomic regions from SNP 143400 to 144000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,305 DEBUG Processing 542/749 atomic regions from SNP 162498 to 163098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,386 DEBUG Processing 529/735 atomic regions from SNP 158489 to 159089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,397 DEBUG Processing 480/706 atomic regions from SNP 143700 to 144300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,543 DEBUG Processing 543/749 atomic regions from SNP 162798 to 163398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,620 DEBUG Processing 530/735 atomic regions from SNP 158789 to 159389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,625 DEBUG Processing 481/706 atomic regions from SNP 144000 to 144600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,780 DEBUG Processing 544/749 atomic regions from SNP 163098 to 163698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,863 DEBUG Processing 482/706 atomic regions from SNP 144300 to 144900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,884 DEBUG Processing 531/735 atomic regions from SNP 159089 to 159689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,021 DEBUG Processing 545/749 atomic regions from SNP 163398 to 163998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,110 DEBUG Processing 483/706 atomic regions from SNP 144600 to 145200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,126 DEBUG Processing 532/735 atomic regions from SNP 159389 to 159989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,257 DEBUG Processing 546/749 atomic regions from SNP 163698 to 164298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,365 DEBUG Processing 484/706 atomic regions from SNP 144900 to 145500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,374 DEBUG Processing 533/735 atomic regions from SNP 159689 to 160289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,464 DEBUG Subchromosome time: 257.63636891392525, subchromosome SNPs: 257634 2025-01-31 09:51:57,464 DEBUG Estimated BADs: [1.41, 0.71, 2.82, 1.41, 4.24, 1.41, 0.71, 7.06, 1.41, 0.71, 2.82, 0.35, 0.71, 7.06, 1.41, 4.24, 1.41, 0.71, 5.65, 2.82, 1.41, 9.89, 2.82, 0.47, 1.41, 2.82, 0.71, 1.41] SNP counts: [10981, 31897, 12975, 5656, 2121, 8097, 5975, 317, 20997, 18412, 6781, 8708, 6077, 836, 3512, 12187, 20892, 16508, 1257, 16704, 2546, 795, 7095, 6999, 2392, 3906, 17525, 5486] SNP IDs counts: [10981, 31897, 12975, 5656, 2121, 8097, 5975, 317, 20997, 18412, 6781, 8708, 6077, 836, 3512, 12187, 20892, 16508, 1257, 16704, 2546, 795, 7095, 6999, 2392, 3906, 17525, 5486] Critical gap: 663245bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.41Mbp, 28.19Mbp, 35.13Mbp, 38.29Mbp, 39.40Mbp, 44.09Mbp, 47.59Mbp, 47.89Mbp, 59.51Mbp, 70.71Mbp, 74.43Mbp, 79.52Mbp, 83.00Mbp, 83.44Mbp, 85.33Mbp, 91.99Mbp, 103.43Mbp, 112.94Mbp, 113.60Mbp, 122.84Mbp, 124.64Mbp, 125.07Mbp, 128.84Mbp, 133.38Mbp, 134.79Mbp, 136.86Mbp, 146.58Mbp, 149.74Mbp] 2025-01-31 09:51:57,464 DEBUG chr6 time: 257.63699439400807 s 2025-01-31 09:51:57,485 DEBUG Processing 547/749 atomic regions from SNP 163998 to 164598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,599 DEBUG Processing 485/706 atomic regions from SNP 145200 to 145800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,632 DEBUG Processing 534/735 atomic regions from SNP 159989 to 160589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,634 DEBUG chr6: Fitting background model for 28 segments 2025-01-31 09:51:57,712 DEBUG Processing 548/749 atomic regions from SNP 164298 to 164898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,844 DEBUG Processing 486/706 atomic regions from SNP 145500 to 146100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,864 DEBUG Processing 535/735 atomic regions from SNP 160289 to 160889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,940 DEBUG Processing 549/749 atomic regions from SNP 164598 to 165198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,008 DEBUG Segmenting atomic regions: 2025-01-31 09:51:58,093 DEBUG Processing 487/706 atomic regions from SNP 145800 to 146400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,100 DEBUG Processing 1/669 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,101 DEBUG Processing 536/735 atomic regions from SNP 160589 to 161189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,168 DEBUG Processing 550/749 atomic regions from SNP 164898 to 165498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,325 DEBUG Processing 2/669 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,336 DEBUG Processing 537/735 atomic regions from SNP 160889 to 161489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,355 DEBUG Processing 488/706 atomic regions from SNP 146100 to 146700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,408 DEBUG Processing 551/749 atomic regions from SNP 165198 to 165798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,561 DEBUG Processing 3/669 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,578 DEBUG Processing 538/735 atomic regions from SNP 161189 to 161789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,617 DEBUG Processing 489/706 atomic regions from SNP 146400 to 147000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,650 DEBUG Processing 552/749 atomic regions from SNP 165498 to 166098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,792 DEBUG Processing 4/669 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,814 DEBUG Processing 539/735 atomic regions from SNP 161489 to 162089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,884 DEBUG Processing 490/706 atomic regions from SNP 146700 to 147300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,889 DEBUG Processing 553/749 atomic regions from SNP 165798 to 166398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,030 DEBUG Processing 5/669 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,059 DEBUG Processing 540/735 atomic regions from SNP 161789 to 162389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,121 DEBUG Processing 491/706 atomic regions from SNP 147000 to 147600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,128 DEBUG Processing 554/749 atomic regions from SNP 166098 to 166698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,262 DEBUG Processing 6/669 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,295 DEBUG Processing 541/735 atomic regions from SNP 162089 to 162689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,355 DEBUG Processing 492/706 atomic regions from SNP 147300 to 147900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,358 DEBUG Processing 555/749 atomic regions from SNP 166398 to 166998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,487 DEBUG Processing 7/669 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,531 DEBUG Processing 542/735 atomic regions from SNP 162389 to 162989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,588 DEBUG Processing 556/749 atomic regions from SNP 166698 to 167298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,591 DEBUG Processing 493/706 atomic regions from SNP 147600 to 148200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,721 DEBUG Processing 8/669 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,778 DEBUG Processing 543/735 atomic regions from SNP 162689 to 163289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,825 DEBUG Processing 557/749 atomic regions from SNP 166998 to 167598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,860 DEBUG Processing 494/706 atomic regions from SNP 147900 to 148500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,955 DEBUG Processing 9/669 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,024 DEBUG Processing 544/735 atomic regions from SNP 162989 to 163589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,063 DEBUG Processing 558/749 atomic regions from SNP 167298 to 167898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,120 DEBUG Processing 495/706 atomic regions from SNP 148200 to 148800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,192 DEBUG Processing 10/669 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,272 DEBUG Processing 545/735 atomic regions from SNP 163289 to 163889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,302 DEBUG Processing 559/749 atomic regions from SNP 167598 to 168198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,381 DEBUG Processing 496/706 atomic regions from SNP 148500 to 149100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,414 DEBUG Processing 11/669 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,522 DEBUG Processing 546/735 atomic regions from SNP 163589 to 164189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,545 DEBUG Processing 560/749 atomic regions from SNP 167898 to 168498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,634 DEBUG Processing 497/706 atomic regions from SNP 148800 to 149400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,638 DEBUG Processing 12/669 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,769 DEBUG Processing 547/735 atomic regions from SNP 163889 to 164489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,786 DEBUG Processing 561/749 atomic regions from SNP 168198 to 168798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,864 DEBUG Processing 13/669 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,872 DEBUG Processing 498/706 atomic regions from SNP 149100 to 149700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,018 DEBUG Processing 548/735 atomic regions from SNP 164189 to 164789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,029 DEBUG Processing 562/749 atomic regions from SNP 168498 to 169098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,106 DEBUG Processing 14/669 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,117 DEBUG Processing 499/706 atomic regions from SNP 149400 to 150000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,266 DEBUG Processing 549/735 atomic regions from SNP 164489 to 165089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,291 DEBUG Processing 563/749 atomic regions from SNP 168798 to 169398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,338 DEBUG Processing 15/669 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,361 DEBUG Processing 500/706 atomic regions from SNP 149700 to 150300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,510 DEBUG Processing 550/735 atomic regions from SNP 164789 to 165389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,553 DEBUG Processing 564/749 atomic regions from SNP 169098 to 169698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,570 DEBUG Processing 16/669 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,604 DEBUG Processing 501/706 atomic regions from SNP 150000 to 150600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,750 DEBUG Processing 551/735 atomic regions from SNP 165089 to 165689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,790 DEBUG Processing 565/749 atomic regions from SNP 169398 to 169998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,800 DEBUG Processing 17/669 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,848 DEBUG Processing 502/706 atomic regions from SNP 150300 to 150900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,987 DEBUG Processing 552/735 atomic regions from SNP 165389 to 165989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,030 DEBUG Processing 566/749 atomic regions from SNP 169698 to 170298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,032 DEBUG Processing 18/669 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,095 DEBUG Processing 503/706 atomic regions from SNP 150600 to 151200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,225 DEBUG Processing 553/735 atomic regions from SNP 165689 to 166289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,255 DEBUG Processing 19/669 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,264 DEBUG Processing 567/749 atomic regions from SNP 169998 to 170598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,342 DEBUG Processing 504/706 atomic regions from SNP 150900 to 151500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,451 DEBUG Processing 554/735 atomic regions from SNP 165989 to 166589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,473 DEBUG Processing 20/669 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,494 DEBUG Processing 568/749 atomic regions from SNP 170298 to 170898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,587 DEBUG Processing 505/706 atomic regions from SNP 151200 to 151800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,679 DEBUG Processing 555/735 atomic regions from SNP 166289 to 166889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,691 DEBUG Processing 21/669 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,722 DEBUG Processing 569/749 atomic regions from SNP 170598 to 171198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,828 DEBUG Processing 506/706 atomic regions from SNP 151500 to 152100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,910 DEBUG Processing 556/735 atomic regions from SNP 166589 to 167189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,915 DEBUG Processing 22/669 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,953 DEBUG Processing 570/749 atomic regions from SNP 170898 to 171498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,071 DEBUG Processing 507/706 atomic regions from SNP 151800 to 152400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,145 DEBUG Processing 557/735 atomic regions from SNP 166889 to 167489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,148 DEBUG Processing 23/669 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,189 DEBUG Processing 571/749 atomic regions from SNP 171198 to 171798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,314 DEBUG Processing 508/706 atomic regions from SNP 152100 to 152700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,377 DEBUG Processing 24/669 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,383 DEBUG Processing 558/735 atomic regions from SNP 167189 to 167789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,421 DEBUG Processing 572/749 atomic regions from SNP 171498 to 172098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,563 DEBUG Processing 509/706 atomic regions from SNP 152400 to 153000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,607 DEBUG Processing 25/669 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,626 DEBUG Processing 559/735 atomic regions from SNP 167489 to 168089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,663 DEBUG Processing 573/749 atomic regions from SNP 171798 to 172398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,831 DEBUG Processing 510/706 atomic regions from SNP 152700 to 153300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,848 DEBUG Processing 26/669 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,876 DEBUG Processing 560/735 atomic regions from SNP 167789 to 168389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,907 DEBUG Processing 574/749 atomic regions from SNP 172098 to 172698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,080 DEBUG Processing 511/706 atomic regions from SNP 153000 to 153600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,084 DEBUG Processing 27/669 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,120 DEBUG Processing 561/735 atomic regions from SNP 168089 to 168689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,145 DEBUG Processing 575/749 atomic regions from SNP 172398 to 172998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,313 DEBUG Processing 28/669 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,325 DEBUG Processing 512/706 atomic regions from SNP 153300 to 153900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,364 DEBUG Processing 562/735 atomic regions from SNP 168389 to 168989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,381 DEBUG Processing 576/749 atomic regions from SNP 172698 to 173298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,546 DEBUG Processing 29/669 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,575 DEBUG Processing 513/706 atomic regions from SNP 153600 to 154200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,612 DEBUG Processing 563/735 atomic regions from SNP 168689 to 169289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,627 DEBUG Processing 577/749 atomic regions from SNP 172998 to 173598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,767 DEBUG Processing 30/669 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,813 DEBUG Processing 514/706 atomic regions from SNP 153900 to 154500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,851 DEBUG Processing 564/735 atomic regions from SNP 168989 to 169589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,866 DEBUG Processing 578/749 atomic regions from SNP 173298 to 173898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,942 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:52:04,944 DEBUG chr9: Signal quantile: 0.989. signal threshold: 12. Best RMSEA: 0.015 2025-01-31 09:52:04,983 DEBUG Processing 31/669 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,045 DEBUG Processing 515/706 atomic regions from SNP 154200 to 154800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,092 DEBUG Processing 565/735 atomic regions from SNP 169289 to 169889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,105 DEBUG Processing 579/749 atomic regions from SNP 173598 to 174198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,203 DEBUG Processing 32/669 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,277 DEBUG Processing 516/706 atomic regions from SNP 154500 to 155100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,327 DEBUG Processing 566/735 atomic regions from SNP 169589 to 170189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,346 DEBUG Processing 580/749 atomic regions from SNP 173898 to 174498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,431 DEBUG Processing 33/669 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,511 DEBUG Processing 517/706 atomic regions from SNP 154800 to 155400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,583 DEBUG Processing 567/735 atomic regions from SNP 169889 to 170489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,611 DEBUG Processing 581/749 atomic regions from SNP 174198 to 174798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,667 DEBUG Processing 34/669 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,745 DEBUG Processing 518/706 atomic regions from SNP 155100 to 155700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,824 DEBUG Processing 568/735 atomic regions from SNP 170189 to 170789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,856 DEBUG Processing 582/749 atomic regions from SNP 174498 to 175098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,913 DEBUG Processing 35/669 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,989 DEBUG Processing 519/706 atomic regions from SNP 155400 to 156000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,062 DEBUG Processing 569/735 atomic regions from SNP 170489 to 171089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,092 DEBUG Processing 583/749 atomic regions from SNP 174798 to 175398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,148 DEBUG Processing 36/669 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,227 DEBUG Processing 520/706 atomic regions from SNP 155700 to 156300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,303 DEBUG Processing 570/735 atomic regions from SNP 170789 to 171389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,340 DEBUG Processing 584/749 atomic regions from SNP 175098 to 175698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,370 DEBUG Processing 37/669 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,467 DEBUG Processing 521/706 atomic regions from SNP 156000 to 156600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,529 DEBUG Processing 571/735 atomic regions from SNP 171089 to 171689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,574 DEBUG Processing 585/749 atomic regions from SNP 175398 to 175998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,593 DEBUG Processing 38/669 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,703 DEBUG Processing 522/706 atomic regions from SNP 156300 to 156900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,762 DEBUG Processing 572/735 atomic regions from SNP 171389 to 171989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,809 DEBUG Processing 586/749 atomic regions from SNP 175698 to 176298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,818 DEBUG Processing 39/669 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,935 DEBUG Processing 523/706 atomic regions from SNP 156600 to 157200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,998 DEBUG Processing 573/735 atomic regions from SNP 171689 to 172289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,044 DEBUG Processing 587/749 atomic regions from SNP 175998 to 176598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,050 DEBUG Processing 40/669 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,161 DEBUG Processing 524/706 atomic regions from SNP 156900 to 157500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,231 DEBUG Processing 574/735 atomic regions from SNP 171989 to 172589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,273 DEBUG Processing 41/669 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,278 DEBUG Processing 588/749 atomic regions from SNP 176298 to 176898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,386 DEBUG chr9 total SNP count: 217745 2025-01-31 09:52:07,386 DEBUG chr9 length: 124595110 2025-01-31 09:52:07,386 DEBUG ----------------------------------------- 2025-01-31 09:52:07,386 INFO Processing SNPs in chr9 2025-01-31 09:52:07,394 DEBUG Processing 525/706 atomic regions from SNP 157200 to 157800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,468 DEBUG Processing 575/735 atomic regions from SNP 172289 to 172889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,496 DEBUG Processing 42/669 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,516 DEBUG Processing 589/749 atomic regions from SNP 176598 to 177198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,618 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 217745)] 2025-01-31 09:52:07,644 DEBUG Processing 526/706 atomic regions from SNP 157500 to 158100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,706 DEBUG Processing 576/735 atomic regions from SNP 172589 to 173189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,711 DEBUG Processing 43/669 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,747 DEBUG Processing 590/749 atomic regions from SNP 176898 to 177498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,775 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:07,901 DEBUG Processing 527/706 atomic regions from SNP 157800 to 158400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,926 DEBUG Processing 44/669 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,930 DEBUG Processing 577/735 atomic regions from SNP 172889 to 173489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,976 DEBUG Processing 591/749 atomic regions from SNP 177198 to 177798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,145 DEBUG Processing 45/669 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,146 DEBUG Processing 528/706 atomic regions from SNP 158100 to 158700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,151 DEBUG Processing 578/735 atomic regions from SNP 173189 to 173789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,209 DEBUG Processing 592/749 atomic regions from SNP 177498 to 178098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,373 DEBUG Processing 46/669 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,381 DEBUG Processing 579/735 atomic regions from SNP 173489 to 174089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,387 DEBUG Processing 529/706 atomic regions from SNP 158400 to 159000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,444 DEBUG Processing 593/749 atomic regions from SNP 177798 to 178398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,607 DEBUG Processing 47/669 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,609 DEBUG Processing 580/735 atomic regions from SNP 173789 to 174389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,619 DEBUG Processing 530/706 atomic regions from SNP 158700 to 159300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,680 DEBUG Processing 594/749 atomic regions from SNP 178098 to 178698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,844 DEBUG Processing 48/669 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,846 DEBUG Processing 581/735 atomic regions from SNP 174089 to 174689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,853 DEBUG Processing 531/706 atomic regions from SNP 159000 to 159600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,916 DEBUG Processing 595/749 atomic regions from SNP 178398 to 178998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,071 DEBUG Processing 49/669 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,078 DEBUG Processing 582/735 atomic regions from SNP 174389 to 174989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,086 DEBUG Processing 532/706 atomic regions from SNP 159300 to 159900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,152 DEBUG Processing 596/749 atomic regions from SNP 178698 to 179298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,297 DEBUG Processing 50/669 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,309 DEBUG Processing 583/735 atomic regions from SNP 174689 to 175289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,321 DEBUG Processing 533/706 atomic regions from SNP 159600 to 160200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,387 DEBUG Processing 597/749 atomic regions from SNP 178998 to 179598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,523 DEBUG Processing 51/669 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,538 DEBUG Processing 584/735 atomic regions from SNP 174989 to 175589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,551 DEBUG Processing 534/706 atomic regions from SNP 159900 to 160500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,621 DEBUG Processing 598/749 atomic regions from SNP 179298 to 179898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,757 DEBUG Processing 52/669 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,798 DEBUG Processing 535/706 atomic regions from SNP 160200 to 160800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,802 DEBUG Processing 585/735 atomic regions from SNP 175289 to 175889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,866 DEBUG Processing 599/749 atomic regions from SNP 179598 to 180198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,992 DEBUG Processing 53/669 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,035 DEBUG Processing 536/706 atomic regions from SNP 160500 to 161100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,052 DEBUG Processing 586/735 atomic regions from SNP 175589 to 176189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,105 DEBUG Processing 600/749 atomic regions from SNP 179898 to 180498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,213 DEBUG Processing 54/669 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,271 DEBUG Processing 537/706 atomic regions from SNP 160800 to 161400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,280 DEBUG Processing 587/735 atomic regions from SNP 175889 to 176489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,341 DEBUG Processing 601/749 atomic regions from SNP 180198 to 180798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,431 DEBUG Processing 55/669 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,510 DEBUG Processing 538/706 atomic regions from SNP 161100 to 161700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,515 DEBUG Processing 588/735 atomic regions from SNP 176189 to 176789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,597 DEBUG Processing 602/749 atomic regions from SNP 180498 to 181098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,654 DEBUG Processing 56/669 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,775 DEBUG Processing 539/706 atomic regions from SNP 161400 to 162000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,792 DEBUG Processing 589/735 atomic regions from SNP 176489 to 177089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,839 DEBUG Processing 603/749 atomic regions from SNP 180798 to 181398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,882 DEBUG Processing 57/669 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,020 DEBUG Processing 540/706 atomic regions from SNP 161700 to 162300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,060 DEBUG Processing 590/735 atomic regions from SNP 176789 to 177389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,083 DEBUG Processing 604/749 atomic regions from SNP 181098 to 181698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,109 DEBUG Processing 58/669 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,252 DEBUG Processing 541/706 atomic regions from SNP 162000 to 162600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,317 DEBUG Processing 605/749 atomic regions from SNP 181398 to 181998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,324 DEBUG Processing 591/735 atomic regions from SNP 177089 to 177689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,329 DEBUG Processing 59/669 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,484 DEBUG Processing 542/706 atomic regions from SNP 162300 to 162900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,553 DEBUG Processing 606/749 atomic regions from SNP 181698 to 182298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,557 DEBUG Processing 60/669 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,589 DEBUG Processing 592/735 atomic regions from SNP 177389 to 177989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,732 DEBUG Processing 543/706 atomic regions from SNP 162600 to 163200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,778 DEBUG Processing 61/669 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,786 DEBUG Processing 607/749 atomic regions from SNP 181998 to 182598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,856 DEBUG Processing 593/735 atomic regions from SNP 177689 to 178289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,976 DEBUG Processing 544/706 atomic regions from SNP 162900 to 163500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,002 DEBUG Processing 62/669 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,023 DEBUG Processing 608/749 atomic regions from SNP 182298 to 182898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,112 DEBUG Processing 594/735 atomic regions from SNP 177989 to 178589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,208 DEBUG Processing 545/706 atomic regions from SNP 163200 to 163800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,228 DEBUG Processing 63/669 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,258 DEBUG Processing 609/749 atomic regions from SNP 182598 to 183198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,363 DEBUG Processing 595/735 atomic regions from SNP 178289 to 178889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,441 DEBUG Processing 546/706 atomic regions from SNP 163500 to 164100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,482 DEBUG Processing 64/669 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,502 DEBUG Processing 610/749 atomic regions from SNP 182898 to 183498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,593 DEBUG Processing 596/735 atomic regions from SNP 178589 to 179189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,669 DEBUG Processing 547/706 atomic regions from SNP 163800 to 164400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,720 DEBUG Processing 65/669 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,742 DEBUG Processing 611/749 atomic regions from SNP 183198 to 183798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,830 DEBUG Processing 597/735 atomic regions from SNP 178889 to 179489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,902 DEBUG Processing 548/706 atomic regions from SNP 164100 to 164700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,944 DEBUG Processing 66/669 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,982 DEBUG Processing 612/749 atomic regions from SNP 183498 to 184098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,060 DEBUG Processing 598/735 atomic regions from SNP 179189 to 179789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,135 DEBUG Processing 549/706 atomic regions from SNP 164400 to 165000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,163 DEBUG Processing 67/669 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,219 DEBUG Processing 613/749 atomic regions from SNP 183798 to 184398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,305 DEBUG Processing 599/735 atomic regions from SNP 179489 to 180089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,366 DEBUG Processing 550/706 atomic regions from SNP 164700 to 165300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,379 DEBUG Processing 68/669 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,455 DEBUG Processing 614/749 atomic regions from SNP 184098 to 184698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,566 DEBUG Processing 600/735 atomic regions from SNP 179789 to 180389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,597 DEBUG Processing 69/669 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,606 DEBUG Processing 551/706 atomic regions from SNP 165000 to 165600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,691 DEBUG Processing 615/749 atomic regions from SNP 184398 to 184998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,815 DEBUG Processing 70/669 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,825 DEBUG Processing 601/735 atomic regions from SNP 180089 to 180689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,848 DEBUG Processing 552/706 atomic regions from SNP 165300 to 165900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,924 DEBUG Processing 616/749 atomic regions from SNP 184698 to 185298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,048 DEBUG Processing 71/669 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,089 DEBUG Processing 553/706 atomic regions from SNP 165600 to 166200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,091 DEBUG Processing 602/735 atomic regions from SNP 180389 to 180989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,153 DEBUG Processing 617/749 atomic regions from SNP 184998 to 185598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,290 DEBUG Processing 72/669 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,323 DEBUG Processing 554/706 atomic regions from SNP 165900 to 166500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,343 DEBUG Processing 603/735 atomic regions from SNP 180689 to 181289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,379 DEBUG Processing 618/749 atomic regions from SNP 185298 to 185898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,534 DEBUG Processing 73/669 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,546 DEBUG Processing 555/706 atomic regions from SNP 166200 to 166800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,571 DEBUG Processing 604/735 atomic regions from SNP 180989 to 181589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,611 DEBUG Processing 619/749 atomic regions from SNP 185598 to 186198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,783 DEBUG Processing 74/669 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,797 DEBUG Processing 605/735 atomic regions from SNP 181289 to 181889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,804 DEBUG Processing 556/706 atomic regions from SNP 166500 to 167100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,842 DEBUG Processing 620/749 atomic regions from SNP 185898 to 186498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,027 DEBUG Processing 606/735 atomic regions from SNP 181589 to 182189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,033 DEBUG Processing 75/669 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,063 DEBUG Processing 557/706 atomic regions from SNP 166800 to 167400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,077 DEBUG Processing 621/749 atomic regions from SNP 186198 to 186798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,254 DEBUG Processing 607/735 atomic regions from SNP 181889 to 182489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,285 DEBUG Processing 76/669 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,299 DEBUG Processing 558/706 atomic regions from SNP 167100 to 167700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,313 DEBUG Processing 622/749 atomic regions from SNP 186498 to 187098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,492 DEBUG Processing 608/735 atomic regions from SNP 182189 to 182789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,540 DEBUG Processing 559/706 atomic regions from SNP 167400 to 168000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,544 DEBUG Processing 77/669 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,551 DEBUG Processing 623/749 atomic regions from SNP 186798 to 187398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,731 DEBUG Processing 609/735 atomic regions from SNP 182489 to 183089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,784 DEBUG Processing 560/706 atomic regions from SNP 167700 to 168300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,786 DEBUG Processing 624/749 atomic regions from SNP 187098 to 187698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,803 DEBUG Processing 78/669 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,971 DEBUG Processing 610/735 atomic regions from SNP 182789 to 183389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,024 DEBUG Processing 625/749 atomic regions from SNP 187398 to 187998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,026 DEBUG Processing 561/706 atomic regions from SNP 168000 to 168600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,059 DEBUG Processing 79/669 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,203 DEBUG Processing 611/735 atomic regions from SNP 183089 to 183689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,261 DEBUG Processing 626/749 atomic regions from SNP 187698 to 188298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,266 DEBUG Processing 562/706 atomic regions from SNP 168300 to 168900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,316 DEBUG Processing 80/669 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,433 DEBUG Processing 612/735 atomic regions from SNP 183389 to 183989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,497 DEBUG Processing 627/749 atomic regions from SNP 187998 to 188598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,516 DEBUG Processing 563/706 atomic regions from SNP 168600 to 169200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,553 DEBUG Processing 81/669 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,666 DEBUG Processing 613/735 atomic regions from SNP 183689 to 184289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,733 DEBUG Processing 628/749 atomic regions from SNP 188298 to 188898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,777 DEBUG Processing 564/706 atomic regions from SNP 168900 to 169500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,796 DEBUG Processing 82/669 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,895 DEBUG Processing 614/735 atomic regions from SNP 183989 to 184589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,966 DEBUG Processing 629/749 atomic regions from SNP 188598 to 189198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,019 DEBUG Processing 565/706 atomic regions from SNP 169200 to 169800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,061 DEBUG Processing 83/669 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,128 DEBUG Processing 615/735 atomic regions from SNP 184289 to 184889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,199 DEBUG Processing 630/749 atomic regions from SNP 188898 to 189498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,256 DEBUG Processing 566/706 atomic regions from SNP 169500 to 170100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,314 DEBUG Processing 84/669 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,370 DEBUG Processing 616/735 atomic regions from SNP 184589 to 185189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,433 DEBUG Processing 631/749 atomic regions from SNP 189198 to 189798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,496 DEBUG Processing 567/706 atomic regions from SNP 169800 to 170400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,571 DEBUG Processing 85/669 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,637 DEBUG Processing 617/735 atomic regions from SNP 184889 to 185489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,673 DEBUG Processing 632/749 atomic regions from SNP 189498 to 190098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,731 DEBUG Processing 568/706 atomic regions from SNP 170100 to 170700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,810 DEBUG Processing 86/669 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,882 DEBUG Processing 618/735 atomic regions from SNP 185189 to 185789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,913 DEBUG Processing 633/749 atomic regions from SNP 189798 to 190398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,973 DEBUG Processing 569/706 atomic regions from SNP 170400 to 171000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,038 DEBUG Processing 87/669 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,121 DEBUG Processing 619/735 atomic regions from SNP 185489 to 186089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,168 DEBUG Processing 634/749 atomic regions from SNP 190098 to 190698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,224 DEBUG Processing 570/706 atomic regions from SNP 170700 to 171300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,270 DEBUG Processing 88/669 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,353 DEBUG Processing 620/735 atomic regions from SNP 185789 to 186389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,403 DEBUG Processing 635/749 atomic regions from SNP 190398 to 190998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,468 DEBUG Processing 571/706 atomic regions from SNP 171000 to 171600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,499 DEBUG Processing 89/669 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,591 DEBUG Processing 621/735 atomic regions from SNP 186089 to 186689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,641 DEBUG Processing 636/749 atomic regions from SNP 190698 to 191298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,732 DEBUG Processing 90/669 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,748 DEBUG Processing 572/706 atomic regions from SNP 171300 to 171900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,826 DEBUG Processing 622/735 atomic regions from SNP 186389 to 186989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,885 DEBUG Processing 637/749 atomic regions from SNP 190998 to 191598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,962 DEBUG Processing 91/669 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,003 DEBUG Processing 573/706 atomic regions from SNP 171600 to 172200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,074 DEBUG Processing 623/735 atomic regions from SNP 186689 to 187289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,121 DEBUG Processing 638/749 atomic regions from SNP 191298 to 191898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,190 DEBUG Processing 92/669 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,250 DEBUG Processing 574/706 atomic regions from SNP 171900 to 172500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,335 DEBUG Processing 624/735 atomic regions from SNP 186989 to 187589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,363 DEBUG Processing 639/749 atomic regions from SNP 191598 to 192198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,417 DEBUG Processing 93/669 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,491 DEBUG Processing 575/706 atomic regions from SNP 172200 to 172800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,602 DEBUG Processing 640/749 atomic regions from SNP 191898 to 192498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,604 DEBUG Processing 625/735 atomic regions from SNP 187289 to 187889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,646 DEBUG Processing 94/669 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,733 DEBUG Processing 576/706 atomic regions from SNP 172500 to 173100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,844 DEBUG Processing 641/749 atomic regions from SNP 192198 to 192798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,864 DEBUG Processing 626/735 atomic regions from SNP 187589 to 188189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,879 DEBUG Processing 95/669 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,979 DEBUG Processing 577/706 atomic regions from SNP 172800 to 173400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,081 DEBUG Processing 642/749 atomic regions from SNP 192498 to 193098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,105 DEBUG Processing 96/669 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,130 DEBUG Processing 627/735 atomic regions from SNP 187889 to 188489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,218 DEBUG Processing 578/706 atomic regions from SNP 173100 to 173700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,319 DEBUG Processing 643/749 atomic regions from SNP 192798 to 193398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,331 DEBUG Processing 97/669 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,382 DEBUG Processing 628/735 atomic regions from SNP 188189 to 188789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,460 DEBUG Processing 579/706 atomic regions from SNP 173400 to 174000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,559 DEBUG Processing 644/749 atomic regions from SNP 193098 to 193698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,561 DEBUG Processing 98/669 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,639 DEBUG Processing 629/735 atomic regions from SNP 188489 to 189089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,699 DEBUG Processing 580/706 atomic regions from SNP 173700 to 174300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,796 DEBUG Processing 99/669 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,805 DEBUG Processing 645/749 atomic regions from SNP 193398 to 193998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,917 DEBUG Processing 630/735 atomic regions from SNP 188789 to 189389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,939 DEBUG Processing 581/706 atomic regions from SNP 174000 to 174600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,027 DEBUG Processing 100/669 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,046 DEBUG Processing 646/749 atomic regions from SNP 193698 to 194298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,188 DEBUG Processing 631/735 atomic regions from SNP 189089 to 189689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,191 DEBUG Processing 582/706 atomic regions from SNP 174300 to 174900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,249 DEBUG Processing 101/669 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,298 DEBUG Processing 647/749 atomic regions from SNP 193998 to 194598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,425 DEBUG Processing 632/735 atomic regions from SNP 189389 to 189989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,428 DEBUG Processing 583/706 atomic regions from SNP 174600 to 175200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,470 DEBUG Processing 102/669 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,539 DEBUG Processing 648/749 atomic regions from SNP 194298 to 194898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,663 DEBUG Processing 633/735 atomic regions from SNP 189689 to 190289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,678 DEBUG Processing 584/706 atomic regions from SNP 174900 to 175500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,690 DEBUG Processing 103/669 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,775 DEBUG Processing 649/749 atomic regions from SNP 194598 to 195198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,902 DEBUG Processing 634/735 atomic regions from SNP 189989 to 190589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,913 DEBUG Processing 104/669 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,944 DEBUG Processing 585/706 atomic regions from SNP 175200 to 175800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,009 DEBUG Processing 650/749 atomic regions from SNP 194898 to 195498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,139 DEBUG Processing 635/735 atomic regions from SNP 190289 to 190889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,140 DEBUG Processing 105/669 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,193 DEBUG Processing 586/706 atomic regions from SNP 175500 to 176100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,236 DEBUG Processing 651/749 atomic regions from SNP 195198 to 195798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,368 DEBUG Processing 106/669 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,373 DEBUG Processing 636/735 atomic regions from SNP 190589 to 191189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,436 DEBUG Processing 587/706 atomic regions from SNP 175800 to 176400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,467 DEBUG Processing 652/749 atomic regions from SNP 195498 to 196098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,612 DEBUG Processing 637/735 atomic regions from SNP 190889 to 191489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,616 DEBUG Processing 107/669 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,684 DEBUG Processing 588/706 atomic regions from SNP 176100 to 176700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,702 DEBUG Processing 653/749 atomic regions from SNP 195798 to 196398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,849 DEBUG Processing 638/735 atomic regions from SNP 191189 to 191789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,863 DEBUG Processing 108/669 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,937 DEBUG Processing 654/749 atomic regions from SNP 196098 to 196698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,940 DEBUG Processing 589/706 atomic regions from SNP 176400 to 177000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,084 DEBUG Processing 639/735 atomic regions from SNP 191489 to 192089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,100 DEBUG Processing 109/669 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,174 DEBUG Processing 655/749 atomic regions from SNP 196398 to 196998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,209 DEBUG Processing 590/706 atomic regions from SNP 176700 to 177300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,320 DEBUG Processing 640/735 atomic regions from SNP 191789 to 192389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,329 DEBUG Processing 110/669 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,411 DEBUG Processing 656/749 atomic regions from SNP 196698 to 197298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,487 DEBUG Processing 591/706 atomic regions from SNP 177000 to 177600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,563 DEBUG Processing 641/735 atomic regions from SNP 192089 to 192689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,573 DEBUG Processing 111/669 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,646 DEBUG Processing 657/749 atomic regions from SNP 196998 to 197598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,757 DEBUG Processing 592/706 atomic regions from SNP 177300 to 177900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,807 DEBUG Processing 642/735 atomic regions from SNP 192389 to 192989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,827 DEBUG Processing 112/669 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,885 DEBUG Processing 658/749 atomic regions from SNP 197298 to 197898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,049 DEBUG Processing 593/706 atomic regions from SNP 177600 to 178200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,057 DEBUG Processing 643/735 atomic regions from SNP 192689 to 193289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,063 DEBUG Processing 113/669 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,132 DEBUG Processing 659/749 atomic regions from SNP 197598 to 198198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,303 DEBUG Processing 644/735 atomic regions from SNP 192989 to 193589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,305 DEBUG Processing 114/669 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,339 DEBUG Processing 594/706 atomic regions from SNP 177900 to 178500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,373 DEBUG Processing 660/749 atomic regions from SNP 197898 to 198498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,536 DEBUG Processing 115/669 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,546 DEBUG Processing 645/735 atomic regions from SNP 193289 to 193889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,612 DEBUG Processing 661/749 atomic regions from SNP 198198 to 198798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,626 DEBUG Processing 595/706 atomic regions from SNP 178200 to 178800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,762 DEBUG Processing 116/669 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,779 DEBUG Processing 646/735 atomic regions from SNP 193589 to 194189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,852 DEBUG Processing 662/749 atomic regions from SNP 198498 to 199098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,898 DEBUG Processing 596/706 atomic regions from SNP 178500 to 179100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,976 DEBUG Processing 117/669 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,010 DEBUG Processing 647/735 atomic regions from SNP 193889 to 194489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,093 DEBUG Processing 663/749 atomic regions from SNP 198798 to 199398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,175 DEBUG Processing 597/706 atomic regions from SNP 178800 to 179400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,183 DEBUG Processing 118/669 atomic regions from SNP 35217 to 35818 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,243 DEBUG Processing 648/735 atomic regions from SNP 194189 to 194789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,333 DEBUG Processing 664/749 atomic regions from SNP 199098 to 199698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,417 DEBUG Processing 119/669 atomic regions from SNP 35518 to 36119 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,450 DEBUG Processing 598/706 atomic regions from SNP 179100 to 179700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,475 DEBUG Processing 649/735 atomic regions from SNP 194489 to 195089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,587 DEBUG Processing 665/749 atomic regions from SNP 199398 to 199998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,630 DEBUG Processing 120/669 atomic regions from SNP 35819 to 36420 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,711 DEBUG Processing 650/735 atomic regions from SNP 194789 to 195389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,725 DEBUG Processing 599/706 atomic regions from SNP 179400 to 180000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,825 DEBUG Processing 666/749 atomic regions from SNP 199698 to 200298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,858 DEBUG Processing 121/669 atomic regions from SNP 36120 to 36721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,940 DEBUG Processing 651/735 atomic regions from SNP 195089 to 195689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,000 DEBUG Processing 600/706 atomic regions from SNP 179700 to 180300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,069 DEBUG Processing 667/749 atomic regions from SNP 199998 to 200598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,080 DEBUG Processing 122/669 atomic regions from SNP 36421 to 37022 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,172 DEBUG Processing 652/735 atomic regions from SNP 195389 to 195989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,259 DEBUG Processing 601/706 atomic regions from SNP 180000 to 180600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,308 DEBUG Processing 668/749 atomic regions from SNP 200298 to 200898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,310 DEBUG Processing 123/669 atomic regions from SNP 36722 to 37323 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,409 DEBUG Processing 653/735 atomic regions from SNP 195689 to 196289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,513 DEBUG Processing 602/706 atomic regions from SNP 180300 to 180900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,539 DEBUG Processing 124/669 atomic regions from SNP 37023 to 37624 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,547 DEBUG Processing 669/749 atomic regions from SNP 200598 to 201198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,641 DEBUG Processing 654/735 atomic regions from SNP 195989 to 196589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,761 DEBUG Processing 125/669 atomic regions from SNP 37324 to 37925 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,769 DEBUG Processing 603/706 atomic regions from SNP 180600 to 181200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,799 DEBUG Processing 670/749 atomic regions from SNP 200898 to 201498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,874 DEBUG Processing 655/735 atomic regions from SNP 196289 to 196889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,976 DEBUG Processing 126/669 atomic regions from SNP 37625 to 38226 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,018 DEBUG Processing 604/706 atomic regions from SNP 180900 to 181500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,043 DEBUG Processing 671/749 atomic regions from SNP 201198 to 201798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,110 DEBUG Processing 656/735 atomic regions from SNP 196589 to 197189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,192 DEBUG Processing 127/669 atomic regions from SNP 37926 to 38527 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,270 DEBUG Processing 672/749 atomic regions from SNP 201498 to 202098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,271 DEBUG Processing 605/706 atomic regions from SNP 181200 to 181800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,344 DEBUG Processing 657/735 atomic regions from SNP 196889 to 197489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,417 DEBUG Processing 128/669 atomic regions from SNP 38227 to 38828 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,499 DEBUG Processing 673/749 atomic regions from SNP 201798 to 202398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,509 DEBUG Processing 606/706 atomic regions from SNP 181500 to 182100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,584 DEBUG Processing 658/735 atomic regions from SNP 197189 to 197789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,653 DEBUG Processing 129/669 atomic regions from SNP 38528 to 39129 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,754 DEBUG Processing 607/706 atomic regions from SNP 181800 to 182400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,758 DEBUG Processing 674/749 atomic regions from SNP 202098 to 202698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,835 DEBUG Processing 659/735 atomic regions from SNP 197489 to 198089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,893 DEBUG Processing 130/669 atomic regions from SNP 38829 to 39430 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,001 DEBUG Processing 608/706 atomic regions from SNP 182100 to 182700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,008 DEBUG Processing 675/749 atomic regions from SNP 202398 to 202998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,122 DEBUG Processing 660/735 atomic regions from SNP 197789 to 198389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,125 DEBUG Processing 131/669 atomic regions from SNP 39130 to 39731 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,242 DEBUG Processing 676/749 atomic regions from SNP 202698 to 203298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,251 DEBUG Processing 609/706 atomic regions from SNP 182400 to 183000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,380 DEBUG Processing 132/669 atomic regions from SNP 39431 to 40032 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,399 DEBUG Processing 661/735 atomic regions from SNP 198089 to 198689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,477 DEBUG Processing 677/749 atomic regions from SNP 202998 to 203598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,496 DEBUG Processing 610/706 atomic regions from SNP 182700 to 183300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,642 DEBUG Processing 133/669 atomic regions from SNP 39732 to 40333 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,677 DEBUG Processing 662/735 atomic regions from SNP 198389 to 198989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,715 DEBUG Processing 678/749 atomic regions from SNP 203298 to 203898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,742 DEBUG Processing 611/706 atomic regions from SNP 183000 to 183600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,874 DEBUG Processing 134/669 atomic regions from SNP 40033 to 40634 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,945 DEBUG Processing 663/735 atomic regions from SNP 198689 to 199289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,951 DEBUG Processing 679/749 atomic regions from SNP 203598 to 204198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,991 DEBUG Processing 612/706 atomic regions from SNP 183300 to 183900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,100 DEBUG Processing 135/669 atomic regions from SNP 40334 to 40935 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,182 DEBUG Processing 680/749 atomic regions from SNP 203898 to 204498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,205 DEBUG Processing 664/735 atomic regions from SNP 198989 to 199589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,240 DEBUG Processing 613/706 atomic regions from SNP 183600 to 184200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,363 DEBUG Processing 136/669 atomic regions from SNP 40635 to 41236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,412 DEBUG Processing 681/749 atomic regions from SNP 204198 to 204798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,456 DEBUG Processing 665/735 atomic regions from SNP 199289 to 199889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,488 DEBUG Processing 614/706 atomic regions from SNP 183900 to 184500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,633 DEBUG Processing 137/669 atomic regions from SNP 40936 to 41537 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,648 DEBUG Processing 682/749 atomic regions from SNP 204498 to 205098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,703 DEBUG Processing 666/735 atomic regions from SNP 199589 to 200189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,737 DEBUG Processing 615/706 atomic regions from SNP 184200 to 184800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,890 DEBUG Processing 683/749 atomic regions from SNP 204798 to 205398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,892 DEBUG Processing 138/669 atomic regions from SNP 41237 to 41838 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,952 DEBUG Processing 667/735 atomic regions from SNP 199889 to 200489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,993 DEBUG Processing 616/706 atomic regions from SNP 184500 to 185100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,138 DEBUG Processing 684/749 atomic regions from SNP 205098 to 205698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,163 DEBUG Processing 139/669 atomic regions from SNP 41538 to 42139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,213 DEBUG Processing 668/735 atomic regions from SNP 200189 to 200789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,261 DEBUG Processing 617/706 atomic regions from SNP 184800 to 185400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,388 DEBUG Processing 685/749 atomic regions from SNP 205398 to 205998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,441 DEBUG Processing 140/669 atomic regions from SNP 41839 to 42440 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,458 DEBUG Processing 669/735 atomic regions from SNP 200489 to 201089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,527 DEBUG Processing 618/706 atomic regions from SNP 185100 to 185700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,636 DEBUG Processing 686/749 atomic regions from SNP 205698 to 206298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,704 DEBUG Processing 670/735 atomic regions from SNP 200789 to 201389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,709 DEBUG Processing 141/669 atomic regions from SNP 42140 to 42741 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,768 DEBUG Processing 619/706 atomic regions from SNP 185400 to 186000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,882 DEBUG Processing 687/749 atomic regions from SNP 205998 to 206598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,955 DEBUG Processing 671/735 atomic regions from SNP 201089 to 201689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,975 DEBUG Processing 142/669 atomic regions from SNP 42441 to 43042 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,013 DEBUG Processing 620/706 atomic regions from SNP 185700 to 186300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,124 DEBUG Processing 688/749 atomic regions from SNP 206298 to 206898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,204 DEBUG Processing 672/735 atomic regions from SNP 201389 to 201989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,227 DEBUG Processing 143/669 atomic regions from SNP 42742 to 43343 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,263 DEBUG Processing 621/706 atomic regions from SNP 186000 to 186600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,369 DEBUG Processing 689/749 atomic regions from SNP 206598 to 207198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,454 DEBUG Processing 673/735 atomic regions from SNP 201689 to 202289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,470 DEBUG Processing 144/669 atomic regions from SNP 43043 to 43644 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,516 DEBUG Processing 622/706 atomic regions from SNP 186300 to 186900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,603 DEBUG Processing 690/749 atomic regions from SNP 206898 to 207498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,695 DEBUG Processing 674/735 atomic regions from SNP 201989 to 202589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,734 DEBUG Processing 145/669 atomic regions from SNP 43344 to 43945 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,764 DEBUG Processing 623/706 atomic regions from SNP 186600 to 187200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,837 DEBUG Processing 691/749 atomic regions from SNP 207198 to 207798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,956 DEBUG Processing 675/735 atomic regions from SNP 202289 to 202889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,999 DEBUG Processing 146/669 atomic regions from SNP 43645 to 44246 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,012 DEBUG Processing 624/706 atomic regions from SNP 186900 to 187500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,076 DEBUG Processing 692/749 atomic regions from SNP 207498 to 208098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,229 DEBUG Processing 676/735 atomic regions from SNP 202589 to 203189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,247 DEBUG Processing 147/669 atomic regions from SNP 43946 to 44547 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,255 DEBUG Processing 625/706 atomic regions from SNP 187200 to 187800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,311 DEBUG Processing 693/749 atomic regions from SNP 207798 to 208398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,471 DEBUG Processing 148/669 atomic regions from SNP 44247 to 44848 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,496 DEBUG Processing 677/735 atomic regions from SNP 202889 to 203489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,497 DEBUG Processing 626/706 atomic regions from SNP 187500 to 188100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,542 DEBUG Processing 694/749 atomic regions from SNP 208098 to 208698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,712 DEBUG Processing 149/669 atomic regions from SNP 44548 to 45149 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,746 DEBUG Processing 627/706 atomic regions from SNP 187800 to 188400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,767 DEBUG Processing 678/735 atomic regions from SNP 203189 to 203789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,769 DEBUG Processing 695/749 atomic regions from SNP 208398 to 208998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,942 DEBUG Processing 150/669 atomic regions from SNP 44849 to 45450 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,996 DEBUG Processing 628/706 atomic regions from SNP 188100 to 188700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,000 DEBUG Processing 696/749 atomic regions from SNP 208698 to 209298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,042 DEBUG Processing 679/735 atomic regions from SNP 203489 to 204089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,168 DEBUG Processing 151/669 atomic regions from SNP 45150 to 45751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,240 DEBUG Processing 697/749 atomic regions from SNP 208998 to 209598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,271 DEBUG Processing 629/706 atomic regions from SNP 188400 to 189000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,314 DEBUG Processing 680/735 atomic regions from SNP 203789 to 204389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,387 DEBUG Processing 152/669 atomic regions from SNP 45451 to 46052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,477 DEBUG Processing 698/749 atomic regions from SNP 209298 to 209898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,546 DEBUG Processing 630/706 atomic regions from SNP 188700 to 189300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,590 DEBUG Processing 681/735 atomic regions from SNP 204089 to 204689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,604 DEBUG Processing 153/669 atomic regions from SNP 45752 to 46352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,713 DEBUG Processing 699/749 atomic regions from SNP 209598 to 210198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,814 DEBUG Processing 631/706 atomic regions from SNP 189000 to 189600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,833 DEBUG Processing 154/669 atomic regions from SNP 46052 to 46652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,866 DEBUG Processing 682/735 atomic regions from SNP 204389 to 204989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,946 DEBUG Processing 700/749 atomic regions from SNP 209898 to 210498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,071 DEBUG Processing 155/669 atomic regions from SNP 46352 to 46952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,080 DEBUG Processing 632/706 atomic regions from SNP 189300 to 189900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,142 DEBUG Processing 683/735 atomic regions from SNP 204689 to 205289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,183 DEBUG Processing 701/749 atomic regions from SNP 210198 to 210798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,308 DEBUG Processing 156/669 atomic regions from SNP 46652 to 47252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,347 DEBUG Processing 633/706 atomic regions from SNP 189600 to 190200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,405 DEBUG Processing 684/735 atomic regions from SNP 204989 to 205589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,414 DEBUG Processing 702/749 atomic regions from SNP 210498 to 211098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,558 DEBUG Processing 157/669 atomic regions from SNP 46952 to 47552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,595 DEBUG Processing 634/706 atomic regions from SNP 189900 to 190500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,644 DEBUG Processing 703/749 atomic regions from SNP 210798 to 211398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,658 DEBUG Processing 685/735 atomic regions from SNP 205289 to 205889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,796 DEBUG Processing 158/669 atomic regions from SNP 47252 to 47852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,859 DEBUG Processing 635/706 atomic regions from SNP 190200 to 190800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,880 DEBUG Processing 704/749 atomic regions from SNP 211098 to 211698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,903 DEBUG Processing 686/735 atomic regions from SNP 205589 to 206189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,026 DEBUG Processing 159/669 atomic regions from SNP 47552 to 48152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,131 DEBUG Processing 705/749 atomic regions from SNP 211398 to 211998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,133 DEBUG Processing 636/706 atomic regions from SNP 190500 to 191100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,146 DEBUG Processing 687/735 atomic regions from SNP 205889 to 206489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,198 DEBUG Segmenting atomic regions: 2025-01-31 09:52:35,257 DEBUG Processing 160/669 atomic regions from SNP 47852 to 48452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,296 DEBUG Processing 1/724 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,367 DEBUG Processing 706/749 atomic regions from SNP 211698 to 212298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,388 DEBUG Processing 637/706 atomic regions from SNP 190800 to 191400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,391 DEBUG Processing 688/735 atomic regions from SNP 206189 to 206789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,502 DEBUG Processing 161/669 atomic regions from SNP 48152 to 48752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,526 DEBUG Processing 2/724 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,610 DEBUG Processing 707/749 atomic regions from SNP 211998 to 212598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,628 DEBUG Processing 638/706 atomic regions from SNP 191100 to 191700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,651 DEBUG Processing 689/735 atomic regions from SNP 206489 to 207089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,754 DEBUG Processing 3/724 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,761 DEBUG Processing 162/669 atomic regions from SNP 48452 to 49052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,841 DEBUG Processing 708/749 atomic regions from SNP 212298 to 212898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,867 DEBUG Processing 639/706 atomic regions from SNP 191400 to 192000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,917 DEBUG Processing 690/735 atomic regions from SNP 206789 to 207389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,985 DEBUG Processing 4/724 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,998 DEBUG Processing 163/669 atomic regions from SNP 48752 to 49352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,070 DEBUG Processing 709/749 atomic regions from SNP 212598 to 213198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,101 DEBUG Processing 640/706 atomic regions from SNP 191700 to 192300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,186 DEBUG Processing 691/735 atomic regions from SNP 207089 to 207689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,219 DEBUG Processing 5/724 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,228 DEBUG Processing 164/669 atomic regions from SNP 49052 to 49652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,304 DEBUG Processing 710/749 atomic regions from SNP 212898 to 213498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,341 DEBUG Processing 641/706 atomic regions from SNP 192000 to 192600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,451 DEBUG Processing 6/724 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,455 DEBUG Processing 165/669 atomic regions from SNP 49352 to 49952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,455 DEBUG Processing 692/735 atomic regions from SNP 207389 to 207989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,539 DEBUG Processing 711/749 atomic regions from SNP 213198 to 213798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,579 DEBUG Processing 642/706 atomic regions from SNP 192300 to 192900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,680 DEBUG Processing 7/724 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,688 DEBUG Processing 166/669 atomic regions from SNP 49652 to 50252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,724 DEBUG Processing 693/735 atomic regions from SNP 207689 to 208289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,772 DEBUG Processing 712/749 atomic regions from SNP 213498 to 214098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,814 DEBUG Processing 643/706 atomic regions from SNP 192600 to 193200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,910 DEBUG Processing 8/724 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,921 DEBUG Processing 167/669 atomic regions from SNP 49952 to 50552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,990 DEBUG Processing 694/735 atomic regions from SNP 207989 to 208589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,004 DEBUG Processing 713/749 atomic regions from SNP 213798 to 214398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,052 DEBUG Processing 644/706 atomic regions from SNP 192900 to 193500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,148 DEBUG Processing 9/724 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,151 DEBUG Processing 168/669 atomic regions from SNP 50252 to 50852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,231 DEBUG Processing 714/749 atomic regions from SNP 214098 to 214698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,272 DEBUG Processing 695/735 atomic regions from SNP 208289 to 208889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,287 DEBUG Processing 645/706 atomic regions from SNP 193200 to 193800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,380 DEBUG Processing 10/724 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,381 DEBUG Processing 169/669 atomic regions from SNP 50552 to 51152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,457 DEBUG Processing 715/749 atomic regions from SNP 214398 to 214998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,522 DEBUG Processing 646/706 atomic regions from SNP 193500 to 194100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,542 DEBUG Processing 696/735 atomic regions from SNP 208589 to 209189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,609 DEBUG Processing 11/724 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,617 DEBUG Processing 170/669 atomic regions from SNP 50852 to 51452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,691 DEBUG Processing 716/749 atomic regions from SNP 214698 to 215298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,764 DEBUG Processing 647/706 atomic regions from SNP 193800 to 194400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,818 DEBUG Processing 697/735 atomic regions from SNP 208889 to 209489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,842 DEBUG Processing 12/724 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,852 DEBUG Processing 171/669 atomic regions from SNP 51152 to 51752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,930 DEBUG Processing 717/749 atomic regions from SNP 214998 to 215598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,013 DEBUG Processing 648/706 atomic regions from SNP 194100 to 194700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,064 DEBUG Processing 13/724 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,079 DEBUG Processing 172/669 atomic regions from SNP 51452 to 52052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,089 DEBUG Processing 698/735 atomic regions from SNP 209189 to 209789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,166 DEBUG Processing 718/749 atomic regions from SNP 215298 to 215898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,275 DEBUG Processing 649/706 atomic regions from SNP 194400 to 195000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,279 DEBUG Processing 14/724 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,307 DEBUG Processing 173/669 atomic regions from SNP 51752 to 52352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,360 DEBUG Processing 699/735 atomic regions from SNP 209489 to 210089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,407 DEBUG Processing 719/749 atomic regions from SNP 215598 to 216198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,499 DEBUG Processing 15/724 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,515 DEBUG Processing 650/706 atomic regions from SNP 194700 to 195300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,533 DEBUG Processing 174/669 atomic regions from SNP 52052 to 52652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,640 DEBUG Processing 700/735 atomic regions from SNP 209789 to 210389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,649 DEBUG Processing 720/749 atomic regions from SNP 215898 to 216498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,722 DEBUG Processing 16/724 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,751 DEBUG Processing 651/706 atomic regions from SNP 195000 to 195600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,764 DEBUG Processing 175/669 atomic regions from SNP 52352 to 52952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,887 DEBUG Processing 721/749 atomic regions from SNP 216198 to 216798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,914 DEBUG Processing 701/735 atomic regions from SNP 210089 to 210689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,952 DEBUG Processing 17/724 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,992 DEBUG Processing 652/706 atomic regions from SNP 195300 to 195900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,011 DEBUG Processing 176/669 atomic regions from SNP 52652 to 53252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,126 DEBUG Processing 722/749 atomic regions from SNP 216498 to 217098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,187 DEBUG Processing 18/724 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,193 DEBUG Processing 702/735 atomic regions from SNP 210389 to 210989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,241 DEBUG Processing 177/669 atomic regions from SNP 52952 to 53552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,245 DEBUG Processing 653/706 atomic regions from SNP 195600 to 196200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,359 DEBUG Processing 723/749 atomic regions from SNP 216798 to 217398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,434 DEBUG Processing 19/724 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,474 DEBUG Processing 178/669 atomic regions from SNP 53252 to 53852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,482 DEBUG Processing 703/735 atomic regions from SNP 210689 to 211289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,486 DEBUG Processing 654/706 atomic regions from SNP 195900 to 196500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,600 DEBUG Processing 724/749 atomic regions from SNP 217098 to 217698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,668 DEBUG Processing 20/724 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,709 DEBUG Processing 179/669 atomic regions from SNP 53552 to 54152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,735 DEBUG Processing 655/706 atomic regions from SNP 196200 to 196800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,764 DEBUG Processing 704/735 atomic regions from SNP 210989 to 211589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,830 DEBUG Processing 725/749 atomic regions from SNP 217398 to 217998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,900 DEBUG Processing 21/724 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,943 DEBUG Processing 180/669 atomic regions from SNP 53852 to 54452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,981 DEBUG Processing 656/706 atomic regions from SNP 196500 to 197100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,034 DEBUG Processing 705/735 atomic regions from SNP 211289 to 211889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,071 DEBUG Processing 726/749 atomic regions from SNP 217698 to 218298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,137 DEBUG Processing 22/724 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,169 DEBUG Processing 181/669 atomic regions from SNP 54152 to 54752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,225 DEBUG Processing 657/706 atomic regions from SNP 196800 to 197400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,305 DEBUG Processing 727/749 atomic regions from SNP 217998 to 218598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,306 DEBUG Processing 706/735 atomic regions from SNP 211589 to 212189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,367 DEBUG Processing 23/724 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,401 DEBUG Processing 182/669 atomic regions from SNP 54452 to 55052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,470 DEBUG Processing 658/706 atomic regions from SNP 197100 to 197700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,542 DEBUG Processing 728/749 atomic regions from SNP 218298 to 218898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,569 DEBUG Processing 707/735 atomic regions from SNP 211889 to 212489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,593 DEBUG Processing 24/724 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,630 DEBUG Processing 183/669 atomic regions from SNP 54752 to 55352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,704 DEBUG Processing 659/706 atomic regions from SNP 197400 to 198000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,779 DEBUG Processing 729/749 atomic regions from SNP 218598 to 219198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,813 DEBUG Processing 25/724 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,826 DEBUG Processing 708/735 atomic regions from SNP 212189 to 212789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,864 DEBUG Processing 184/669 atomic regions from SNP 55052 to 55652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,945 DEBUG Processing 660/706 atomic regions from SNP 197700 to 198300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,037 DEBUG Processing 26/724 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,051 DEBUG Processing 730/749 atomic regions from SNP 218898 to 219498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,079 DEBUG Processing 709/735 atomic regions from SNP 212489 to 213089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,100 DEBUG Processing 185/669 atomic regions from SNP 55352 to 55952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,185 DEBUG Processing 661/706 atomic regions from SNP 198000 to 198600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,267 DEBUG Processing 27/724 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,321 DEBUG Processing 731/749 atomic regions from SNP 219198 to 219798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,329 DEBUG Processing 186/669 atomic regions from SNP 55652 to 56252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,344 DEBUG Processing 710/735 atomic regions from SNP 212789 to 213389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,434 DEBUG Processing 662/706 atomic regions from SNP 198300 to 198900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,517 DEBUG Processing 28/724 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,552 DEBUG Processing 187/669 atomic regions from SNP 55952 to 56552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,600 DEBUG Processing 711/735 atomic regions from SNP 213089 to 213689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,609 DEBUG Processing 732/749 atomic regions from SNP 219498 to 220098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,681 DEBUG Processing 663/706 atomic regions from SNP 198600 to 199200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,742 DEBUG Processing 29/724 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,780 DEBUG Processing 188/669 atomic regions from SNP 56252 to 56852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,850 DEBUG Processing 712/735 atomic regions from SNP 213389 to 213989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,877 DEBUG Processing 733/749 atomic regions from SNP 219798 to 220398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,922 DEBUG Processing 664/706 atomic regions from SNP 198900 to 199500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,969 DEBUG Processing 30/724 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,008 DEBUG Processing 189/669 atomic regions from SNP 56552 to 57152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,101 DEBUG Processing 713/735 atomic regions from SNP 213689 to 214289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,142 DEBUG Processing 734/749 atomic regions from SNP 220098 to 220698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,161 DEBUG Processing 665/706 atomic regions from SNP 199200 to 199800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,184 DEBUG Processing 31/724 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,230 DEBUG Processing 190/669 atomic regions from SNP 56852 to 57452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,343 DEBUG Processing 714/735 atomic regions from SNP 213989 to 214589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,388 DEBUG Processing 735/749 atomic regions from SNP 220398 to 220998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,395 DEBUG Processing 666/706 atomic regions from SNP 199500 to 200100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,405 DEBUG Processing 32/724 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,457 DEBUG Processing 191/669 atomic regions from SNP 57152 to 57752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,595 DEBUG Processing 715/735 atomic regions from SNP 214289 to 214889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,637 DEBUG Processing 33/724 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,638 DEBUG Processing 667/706 atomic regions from SNP 199800 to 200400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,652 DEBUG Processing 736/749 atomic regions from SNP 220698 to 221298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,683 DEBUG Processing 192/669 atomic regions from SNP 57452 to 58052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,842 DEBUG Processing 716/735 atomic regions from SNP 214589 to 215189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,873 DEBUG Processing 34/724 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,888 DEBUG Processing 668/706 atomic regions from SNP 200100 to 200700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,913 DEBUG Processing 193/669 atomic regions from SNP 57752 to 58352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,929 DEBUG Processing 737/749 atomic regions from SNP 220998 to 221598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,085 DEBUG Processing 717/735 atomic regions from SNP 214889 to 215489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,110 DEBUG Processing 35/724 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,141 DEBUG Processing 669/706 atomic regions from SNP 200400 to 201000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,145 DEBUG Processing 194/669 atomic regions from SNP 58052 to 58652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,209 DEBUG Processing 738/749 atomic regions from SNP 221298 to 221898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,339 DEBUG Processing 718/735 atomic regions from SNP 215189 to 215789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,347 DEBUG Processing 36/724 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,382 DEBUG Processing 195/669 atomic regions from SNP 58352 to 58952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,397 DEBUG Processing 670/706 atomic regions from SNP 200700 to 201300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,498 DEBUG Processing 739/749 atomic regions from SNP 221598 to 222198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,583 DEBUG Processing 37/724 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,602 DEBUG Processing 719/735 atomic regions from SNP 215489 to 216089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,625 DEBUG Processing 196/669 atomic regions from SNP 58652 to 59252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,657 DEBUG Processing 671/706 atomic regions from SNP 201000 to 201600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,777 DEBUG Processing 740/749 atomic regions from SNP 221898 to 222498 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,812 DEBUG Processing 38/724 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,854 DEBUG Processing 197/669 atomic regions from SNP 58952 to 59552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,861 DEBUG Processing 720/735 atomic regions from SNP 215789 to 216389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,905 DEBUG Processing 672/706 atomic regions from SNP 201300 to 201900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,039 DEBUG Processing 39/724 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,056 DEBUG Processing 741/749 atomic regions from SNP 222198 to 222798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,082 DEBUG Processing 198/669 atomic regions from SNP 59252 to 59852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,126 DEBUG Processing 721/735 atomic regions from SNP 216089 to 216689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,155 DEBUG Processing 673/706 atomic regions from SNP 201600 to 202200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,271 DEBUG Processing 40/724 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,303 DEBUG Processing 742/749 atomic regions from SNP 222498 to 223098 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,331 DEBUG Processing 199/669 atomic regions from SNP 59552 to 60152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,374 DEBUG Processing 722/735 atomic regions from SNP 216389 to 216989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,391 DEBUG Processing 674/706 atomic regions from SNP 201900 to 202500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,513 DEBUG Processing 41/724 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,548 DEBUG Processing 743/749 atomic regions from SNP 222798 to 223398 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,559 DEBUG Processing 200/669 atomic regions from SNP 59852 to 60452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,630 DEBUG Processing 675/706 atomic regions from SNP 202200 to 202800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,635 DEBUG Processing 723/735 atomic regions from SNP 216689 to 217289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,751 DEBUG Processing 42/724 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,788 DEBUG Processing 201/669 atomic regions from SNP 60152 to 60752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,793 DEBUG Processing 744/749 atomic regions from SNP 223098 to 223698 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,876 DEBUG Processing 724/735 atomic regions from SNP 216989 to 217589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,896 DEBUG Processing 676/706 atomic regions from SNP 202500 to 203100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,039 DEBUG Processing 43/724 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,124 DEBUG Processing 745/749 atomic regions from SNP 223398 to 223998 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,170 DEBUG Processing 202/669 atomic regions from SNP 60452 to 61052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,193 DEBUG Processing 725/735 atomic regions from SNP 217289 to 217889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,228 DEBUG Processing 677/706 atomic regions from SNP 202800 to 203400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,286 DEBUG Processing 44/724 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,358 DEBUG Processing 746/749 atomic regions from SNP 223698 to 224298 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,390 DEBUG Processing 203/669 atomic regions from SNP 60752 to 61352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,426 DEBUG Processing 726/735 atomic regions from SNP 217589 to 218189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,467 DEBUG Processing 678/706 atomic regions from SNP 203100 to 203700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,514 DEBUG Processing 45/724 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,589 DEBUG Processing 747/749 atomic regions from SNP 223998 to 224598 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,621 DEBUG Processing 204/669 atomic regions from SNP 61052 to 61652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,665 DEBUG Processing 727/735 atomic regions from SNP 217889 to 218489 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,713 DEBUG Processing 679/706 atomic regions from SNP 203400 to 204000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,746 DEBUG Processing 46/724 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,831 DEBUG Processing 748/749 atomic regions from SNP 224298 to 224898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,856 DEBUG Processing 205/669 atomic regions from SNP 61352 to 61952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,901 DEBUG Processing 728/735 atomic regions from SNP 218189 to 218789 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,972 DEBUG Processing 47/724 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,975 DEBUG Processing 680/706 atomic regions from SNP 203700 to 204300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,067 DEBUG Processing 749/749 atomic regions from SNP 224598 to 225198 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,080 DEBUG Processing 206/669 atomic regions from SNP 61652 to 62252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,135 DEBUG Processing 729/735 atomic regions from SNP 218489 to 219089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,181 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:52:46,206 DEBUG Processing 48/724 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,217 DEBUG Unique SNPs positions in subchromosome 1: 225199 2025-01-31 09:52:46,244 DEBUG Processing 681/706 atomic regions from SNP 204000 to 204600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,320 DEBUG Processing 207/669 atomic regions from SNP 61952 to 62552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,379 DEBUG Processing 730/735 atomic regions from SNP 218789 to 219389 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,437 DEBUG Processing 49/724 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,520 DEBUG Processing 682/706 atomic regions from SNP 204300 to 204900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,579 DEBUG Processing 208/669 atomic regions from SNP 62252 to 62852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,620 DEBUG Processing 731/735 atomic regions from SNP 219089 to 219689 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,672 DEBUG Processing 50/724 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,806 DEBUG Processing 683/706 atomic regions from SNP 204600 to 205200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,833 DEBUG Processing 209/669 atomic regions from SNP 62552 to 63152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,865 DEBUG Processing 732/735 atomic regions from SNP 219389 to 219989 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,909 DEBUG Processing 51/724 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,090 DEBUG Processing 210/669 atomic regions from SNP 62852 to 63452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,102 DEBUG Processing 684/706 atomic regions from SNP 204900 to 205500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,108 DEBUG Processing 733/735 atomic regions from SNP 219689 to 220289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,145 DEBUG Processing 52/724 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,331 DEBUG Processing 211/669 atomic regions from SNP 63152 to 63752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,353 DEBUG Processing 734/735 atomic regions from SNP 219989 to 220589 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,372 DEBUG Processing 685/706 atomic regions from SNP 205200 to 205800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,377 DEBUG Processing 53/724 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,558 DEBUG Processing 212/669 atomic regions from SNP 63452 to 64052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,589 DEBUG Processing 735/735 atomic regions from SNP 220289 to 220889 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,604 DEBUG Processing 54/724 atomic regions from SNP 15953 to 16554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,635 DEBUG Processing 686/706 atomic regions from SNP 205500 to 206100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,737 DEBUG Unique SNPs positions in subchromosome 1: 220890 2025-01-31 09:52:47,787 DEBUG Processing 213/669 atomic regions from SNP 63752 to 64352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,832 DEBUG Processing 55/724 atomic regions from SNP 16254 to 16855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,894 DEBUG Processing 687/706 atomic regions from SNP 205800 to 206400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,015 DEBUG Processing 214/669 atomic regions from SNP 64052 to 64652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,056 DEBUG Processing 56/724 atomic regions from SNP 16555 to 17156 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,151 DEBUG Processing 688/706 atomic regions from SNP 206100 to 206700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,240 DEBUG Processing 215/669 atomic regions from SNP 64352 to 64952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,281 DEBUG Processing 57/724 atomic regions from SNP 16856 to 17457 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,407 DEBUG Processing 689/706 atomic regions from SNP 206400 to 207000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,466 DEBUG Processing 216/669 atomic regions from SNP 64652 to 65252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,511 DEBUG Processing 58/724 atomic regions from SNP 17157 to 17758 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,672 DEBUG Processing 690/706 atomic regions from SNP 206700 to 207300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,703 DEBUG Processing 217/669 atomic regions from SNP 64952 to 65552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,745 DEBUG Processing 59/724 atomic regions from SNP 17458 to 18059 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,928 DEBUG Processing 218/669 atomic regions from SNP 65252 to 65852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,931 DEBUG Processing 691/706 atomic regions from SNP 207000 to 207600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,983 DEBUG Processing 60/724 atomic regions from SNP 17759 to 18360 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,155 DEBUG Processing 219/669 atomic regions from SNP 65552 to 66152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,156 DEBUG Processing 692/706 atomic regions from SNP 207300 to 207900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,207 DEBUG Processing 61/724 atomic regions from SNP 18060 to 18661 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,390 DEBUG Processing 693/706 atomic regions from SNP 207600 to 208200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,396 DEBUG Processing 220/669 atomic regions from SNP 65852 to 66452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,427 DEBUG Processing 62/724 atomic regions from SNP 18361 to 18962 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,624 DEBUG Processing 694/706 atomic regions from SNP 207900 to 208500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,641 DEBUG Processing 221/669 atomic regions from SNP 66152 to 66752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,645 DEBUG Processing 63/724 atomic regions from SNP 18662 to 19263 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,854 DEBUG Processing 695/706 atomic regions from SNP 208200 to 208800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,868 DEBUG Processing 64/724 atomic regions from SNP 18963 to 19564 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,881 DEBUG Processing 222/669 atomic regions from SNP 66452 to 67052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,094 DEBUG Processing 65/724 atomic regions from SNP 19264 to 19865 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,095 DEBUG Processing 696/706 atomic regions from SNP 208500 to 209100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,107 DEBUG Processing 223/669 atomic regions from SNP 66752 to 67352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,314 DEBUG Processing 66/724 atomic regions from SNP 19565 to 20166 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,324 DEBUG Processing 224/669 atomic regions from SNP 67052 to 67652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,341 DEBUG Processing 697/706 atomic regions from SNP 208800 to 209400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,537 DEBUG Processing 67/724 atomic regions from SNP 19866 to 20467 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,544 DEBUG Processing 225/669 atomic regions from SNP 67352 to 67952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,595 DEBUG Processing 698/706 atomic regions from SNP 209100 to 209700 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,758 DEBUG Processing 226/669 atomic regions from SNP 67652 to 68252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,761 DEBUG Processing 68/724 atomic regions from SNP 20167 to 20768 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,841 DEBUG Processing 699/706 atomic regions from SNP 209400 to 210000 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,912 DEBUG Subchromosome time: 214.686825243989, subchromosome SNPs: 225199 2025-01-31 09:52:50,912 DEBUG Estimated BADs: [1.44, 0.48, 1.44, 0.72, 2.89, 1.44, 0.29, 0.72, 2.89, 0.36, 1.44, 2.89, 14.44, 1.44, 0.36, 0.72, 1.44, 5.78, 0.72] SNP counts: [20574, 2691, 27397, 14111, 6378, 6225, 4202, 14187, 11038, 2386, 17750, 7364, 3859, 34035, 9900, 12006, 24575, 4502, 2019] SNP IDs counts: [20574, 2691, 27397, 14111, 6378, 6225, 4202, 14187, 11038, 2386, 17750, 7364, 3859, 34035, 9900, 12006, 24575, 4502, 2019] Critical gap: 617112bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 14.82Mbp, 16.46Mbp, 31.97Mbp, 40.10Mbp, 43.51Mbp, 46.98Mbp, 49.54Mbp, 58.22Mbp, 64.14Mbp, 65.63Mbp, 75.55Mbp, 79.64Mbp, 81.65Mbp, 100.79Mbp, 106.65Mbp, 113.35Mbp, 126.90Mbp, 129.35Mbp, 130.69Mbp] 2025-01-31 09:52:50,912 DEBUG chr10 time: 214.6874174530385 s 2025-01-31 09:52:50,987 DEBUG Processing 227/669 atomic regions from SNP 67952 to 68552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,003 DEBUG Processing 69/724 atomic regions from SNP 20468 to 21069 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,056 DEBUG chr10: Fitting background model for 19 segments 2025-01-31 09:52:51,067 DEBUG Processing 700/706 atomic regions from SNP 209700 to 210300 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,224 DEBUG Processing 70/724 atomic regions from SNP 20769 to 21370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,236 DEBUG Processing 228/669 atomic regions from SNP 68252 to 68852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,295 DEBUG Processing 701/706 atomic regions from SNP 210000 to 210600 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,436 DEBUG Processing 71/724 atomic regions from SNP 21070 to 21671 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,447 DEBUG Processing 229/669 atomic regions from SNP 68552 to 69152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,525 DEBUG Processing 702/706 atomic regions from SNP 210300 to 210900 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,644 DEBUG Processing 72/724 atomic regions from SNP 21371 to 21972 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,663 DEBUG Processing 230/669 atomic regions from SNP 68852 to 69452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,760 DEBUG Processing 703/706 atomic regions from SNP 210600 to 211200 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,862 DEBUG Processing 73/724 atomic regions from SNP 21672 to 22273 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,875 DEBUG Processing 231/669 atomic regions from SNP 69152 to 69752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,984 DEBUG Processing 704/706 atomic regions from SNP 210900 to 211500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,088 DEBUG Processing 74/724 atomic regions from SNP 21973 to 22574 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,088 DEBUG Processing 232/669 atomic regions from SNP 69452 to 70052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,208 DEBUG Processing 705/706 atomic regions from SNP 211200 to 211800 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,307 DEBUG Processing 233/669 atomic regions from SNP 69752 to 70352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,314 DEBUG Processing 75/724 atomic regions from SNP 22274 to 22875 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,430 DEBUG Processing 706/706 atomic regions from SNP 211500 to 212100 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,533 DEBUG Processing 234/669 atomic regions from SNP 70052 to 70652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,546 DEBUG Processing 76/724 atomic regions from SNP 22575 to 23176 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,563 DEBUG Unique SNPs positions in subchromosome 3: 212101 2025-01-31 09:52:52,753 DEBUG Processing 235/669 atomic regions from SNP 70352 to 70952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,770 DEBUG Processing 77/724 atomic regions from SNP 22876 to 23477 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,972 DEBUG Processing 236/669 atomic regions from SNP 70652 to 71252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,999 DEBUG Processing 78/724 atomic regions from SNP 23177 to 23778 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,184 DEBUG Processing 237/669 atomic regions from SNP 70952 to 71552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,231 DEBUG Processing 79/724 atomic regions from SNP 23478 to 24079 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,394 DEBUG Processing 238/669 atomic regions from SNP 71252 to 71852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,450 DEBUG Processing 80/724 atomic regions from SNP 23779 to 24380 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,606 DEBUG Processing 239/669 atomic regions from SNP 71552 to 72152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,672 DEBUG Processing 81/724 atomic regions from SNP 24080 to 24681 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,822 DEBUG Processing 240/669 atomic regions from SNP 71852 to 72452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,900 DEBUG Processing 82/724 atomic regions from SNP 24381 to 24982 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,060 DEBUG Processing 241/669 atomic regions from SNP 72152 to 72752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,135 DEBUG Processing 83/724 atomic regions from SNP 24682 to 25283 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,312 DEBUG Processing 242/669 atomic regions from SNP 72452 to 73052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,369 DEBUG Processing 84/724 atomic regions from SNP 24983 to 25584 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,558 DEBUG Processing 243/669 atomic regions from SNP 72752 to 73352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,603 DEBUG Processing 85/724 atomic regions from SNP 25284 to 25885 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,778 DEBUG Processing 244/669 atomic regions from SNP 73052 to 73652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,832 DEBUG Processing 86/724 atomic regions from SNP 25585 to 26186 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,997 DEBUG Processing 245/669 atomic regions from SNP 73352 to 73952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,074 DEBUG Processing 87/724 atomic regions from SNP 25886 to 26487 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,221 DEBUG Processing 246/669 atomic regions from SNP 73652 to 74252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,314 DEBUG Processing 88/724 atomic regions from SNP 26187 to 26788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,463 DEBUG Processing 247/669 atomic regions from SNP 73952 to 74552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,549 DEBUG Processing 89/724 atomic regions from SNP 26488 to 27089 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,724 DEBUG Processing 248/669 atomic regions from SNP 74252 to 74852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,777 DEBUG Processing 90/724 atomic regions from SNP 26789 to 27390 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,984 DEBUG Processing 249/669 atomic regions from SNP 74552 to 75152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,004 DEBUG Processing 91/724 atomic regions from SNP 27090 to 27691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,229 DEBUG Processing 250/669 atomic regions from SNP 74852 to 75452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,232 DEBUG Processing 92/724 atomic regions from SNP 27391 to 27992 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,457 DEBUG Processing 251/669 atomic regions from SNP 75152 to 75752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,473 DEBUG Processing 93/724 atomic regions from SNP 27692 to 28293 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,687 DEBUG Processing 252/669 atomic regions from SNP 75452 to 76052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,705 DEBUG Processing 94/724 atomic regions from SNP 27993 to 28594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,920 DEBUG Processing 253/669 atomic regions from SNP 75752 to 76352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,943 DEBUG Processing 95/724 atomic regions from SNP 28294 to 28895 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,157 DEBUG Processing 254/669 atomic regions from SNP 76052 to 76652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,180 DEBUG Processing 96/724 atomic regions from SNP 28595 to 29196 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,387 DEBUG Processing 255/669 atomic regions from SNP 76352 to 76952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,412 DEBUG Processing 97/724 atomic regions from SNP 28896 to 29497 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,619 DEBUG Processing 256/669 atomic regions from SNP 76652 to 77252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,646 DEBUG Processing 98/724 atomic regions from SNP 29197 to 29798 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,971 DEBUG Processing 257/669 atomic regions from SNP 76952 to 77552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,989 DEBUG Processing 99/724 atomic regions from SNP 29498 to 30099 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,237 DEBUG Processing 258/669 atomic regions from SNP 77252 to 77852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,241 DEBUG Processing 100/724 atomic regions from SNP 29799 to 30400 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,487 DEBUG Processing 259/669 atomic regions from SNP 77552 to 78152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,497 DEBUG Processing 101/724 atomic regions from SNP 30100 to 30701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,733 DEBUG Processing 260/669 atomic regions from SNP 77852 to 78452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,761 DEBUG Processing 102/724 atomic regions from SNP 30401 to 31002 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,987 DEBUG Processing 261/669 atomic regions from SNP 78152 to 78752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,030 DEBUG Processing 103/724 atomic regions from SNP 30702 to 31303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,242 DEBUG Processing 262/669 atomic regions from SNP 78452 to 79052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,293 DEBUG Processing 104/724 atomic regions from SNP 31003 to 31604 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,482 DEBUG Processing 263/669 atomic regions from SNP 78752 to 79352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,560 DEBUG Processing 105/724 atomic regions from SNP 31304 to 31905 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,732 DEBUG Processing 264/669 atomic regions from SNP 79052 to 79652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,828 DEBUG Processing 106/724 atomic regions from SNP 31605 to 32206 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,999 DEBUG Processing 265/669 atomic regions from SNP 79352 to 79952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,097 DEBUG Processing 107/724 atomic regions from SNP 31906 to 32507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,279 DEBUG Processing 266/669 atomic regions from SNP 79652 to 80252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,375 DEBUG Processing 108/724 atomic regions from SNP 32207 to 32808 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,537 DEBUG Processing 267/669 atomic regions from SNP 79952 to 80552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,643 DEBUG Processing 109/724 atomic regions from SNP 32508 to 33109 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,767 DEBUG Processing 268/669 atomic regions from SNP 80252 to 80852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,891 DEBUG Processing 110/724 atomic regions from SNP 32809 to 33410 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,999 DEBUG Processing 269/669 atomic regions from SNP 80552 to 81152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,141 DEBUG Processing 111/724 atomic regions from SNP 33110 to 33711 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,216 DEBUG Processing 270/669 atomic regions from SNP 80852 to 81452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,375 DEBUG Processing 112/724 atomic regions from SNP 33411 to 34012 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,462 DEBUG Processing 271/669 atomic regions from SNP 81152 to 81752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,598 DEBUG Processing 113/724 atomic regions from SNP 33712 to 34313 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,713 DEBUG Processing 272/669 atomic regions from SNP 81452 to 82052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,825 DEBUG Processing 114/724 atomic regions from SNP 34013 to 34614 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,952 DEBUG Processing 273/669 atomic regions from SNP 81752 to 82352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,068 DEBUG Processing 115/724 atomic regions from SNP 34314 to 34915 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,175 DEBUG Processing 274/669 atomic regions from SNP 82052 to 82652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,300 DEBUG Processing 116/724 atomic regions from SNP 34615 to 35216 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,400 DEBUG Processing 275/669 atomic regions from SNP 82352 to 82952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,534 DEBUG Processing 117/724 atomic regions from SNP 34916 to 35517 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,622 DEBUG Processing 276/669 atomic regions from SNP 82652 to 83252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,763 DEBUG Processing 118/724 atomic regions from SNP 35217 to 35818 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,849 DEBUG Processing 277/669 atomic regions from SNP 82952 to 83552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,994 DEBUG Processing 119/724 atomic regions from SNP 35518 to 36119 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,080 DEBUG Processing 278/669 atomic regions from SNP 83252 to 83852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,228 DEBUG Processing 120/724 atomic regions from SNP 35819 to 36420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,337 DEBUG Processing 279/669 atomic regions from SNP 83552 to 84152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,468 DEBUG Processing 121/724 atomic regions from SNP 36120 to 36721 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,591 DEBUG Processing 280/669 atomic regions from SNP 83852 to 84452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,701 DEBUG Processing 122/724 atomic regions from SNP 36421 to 37022 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,816 DEBUG Processing 281/669 atomic regions from SNP 84152 to 84752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,935 DEBUG Processing 123/724 atomic regions from SNP 36722 to 37323 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,047 DEBUG Processing 282/669 atomic regions from SNP 84452 to 85052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,169 DEBUG Processing 124/724 atomic regions from SNP 37023 to 37624 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,278 DEBUG Processing 283/669 atomic regions from SNP 84752 to 85352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,394 DEBUG Processing 125/724 atomic regions from SNP 37324 to 37925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,426 DEBUG Subchromosome time: 223.11696569796186, subchromosome SNPs: 220890 2025-01-31 09:53:04,427 DEBUG Estimated BADs: [3.58, 0.30, 0.90, 1.79, 16.11, 1.79, 3.58, 0.90, 1.79, 0.60, 1.79, 0.45, 1.79, 0.45, 7.16, 0.90, 7.16, 17.90, 5.37, 1.79, 5.37, 14.32, 1.79, 3.58, 0.36, 0.90, 5.37, 1.79, 5.37, 1.79, 3.58, 10.74, 3.58, 12.53, 3.58] SNP counts: [2727, 4594, 3947, 3421, 163, 22167, 4278, 9812, 6668, 11093, 10508, 10506, 3287, 4660, 273, 14910, 1482, 751, 2534, 19368, 2053, 906, 16688, 4473, 10221, 3784, 5213, 6300, 2144, 8738, 4666, 2450, 1754, 4556, 9795] SNP IDs counts: [2727, 4594, 3947, 3421, 163, 22167, 4278, 9812, 6668, 11093, 10508, 10506, 3287, 4660, 273, 14910, 1482, 751, 2534, 19368, 2053, 906, 16688, 4473, 10221, 3784, 5213, 6300, 2144, 8738, 4666, 2450, 1754, 4556, 9795] Critical gap: 616920bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.68Mbp, 7.51Mbp, 9.69Mbp, 11.50Mbp, 11.58Mbp, 25.60Mbp, 27.93Mbp, 33.59Mbp, 37.20Mbp, 43.82Mbp, 49.56Mbp, 56.10Mbp, 58.02Mbp, 60.86Mbp, 61.01Mbp, 69.75Mbp, 70.52Mbp, 70.91Mbp, 72.48Mbp, 83.57Mbp, 84.64Mbp, 85.10Mbp, 94.12Mbp, 96.55Mbp, 102.48Mbp, 104.53Mbp, 107.39Mbp, 110.72Mbp, 111.85Mbp, 116.87Mbp, 119.34Mbp, 120.61Mbp, 121.53Mbp, 124.00Mbp, 129.40Mbp] 2025-01-31 09:53:04,427 DEBUG chr8 time: 223.11761856998783 s 2025-01-31 09:53:04,502 DEBUG Processing 284/669 atomic regions from SNP 85052 to 85652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,562 DEBUG chr8: Fitting background model for 35 segments 2025-01-31 09:53:04,617 DEBUG Processing 126/724 atomic regions from SNP 37625 to 38226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,725 DEBUG Processing 285/669 atomic regions from SNP 85352 to 85952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,842 DEBUG Processing 127/724 atomic regions from SNP 37926 to 38527 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,946 DEBUG Processing 286/669 atomic regions from SNP 85652 to 86252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,066 DEBUG Processing 128/724 atomic regions from SNP 38227 to 38828 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,164 DEBUG Processing 287/669 atomic regions from SNP 85952 to 86552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,289 DEBUG Processing 129/724 atomic regions from SNP 38528 to 39129 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,388 DEBUG Processing 288/669 atomic regions from SNP 86252 to 86852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,517 DEBUG Processing 130/724 atomic regions from SNP 38829 to 39430 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,622 DEBUG Processing 289/669 atomic regions from SNP 86552 to 87152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,751 DEBUG Processing 131/724 atomic regions from SNP 39130 to 39731 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,859 DEBUG Processing 290/669 atomic regions from SNP 86852 to 87452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,971 DEBUG Processing 132/724 atomic regions from SNP 39431 to 40032 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,095 DEBUG Processing 291/669 atomic regions from SNP 87152 to 87752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,197 DEBUG Processing 133/724 atomic regions from SNP 39732 to 40333 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,327 DEBUG Processing 292/669 atomic regions from SNP 87452 to 88052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,423 DEBUG Processing 134/724 atomic regions from SNP 40033 to 40634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,570 DEBUG Processing 293/669 atomic regions from SNP 87752 to 88352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,653 DEBUG Processing 135/724 atomic regions from SNP 40334 to 40935 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,799 DEBUG Processing 294/669 atomic regions from SNP 88052 to 88652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,874 DEBUG Processing 136/724 atomic regions from SNP 40635 to 41236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,019 DEBUG Processing 295/669 atomic regions from SNP 88352 to 88952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,099 DEBUG Processing 137/724 atomic regions from SNP 40936 to 41537 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,249 DEBUG Processing 296/669 atomic regions from SNP 88652 to 89252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,320 DEBUG Processing 138/724 atomic regions from SNP 41237 to 41838 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,483 DEBUG Processing 297/669 atomic regions from SNP 88952 to 89552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,541 DEBUG Processing 139/724 atomic regions from SNP 41538 to 42139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,722 DEBUG Processing 298/669 atomic regions from SNP 89252 to 89852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,767 DEBUG Processing 140/724 atomic regions from SNP 41839 to 42440 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,957 DEBUG Processing 299/669 atomic regions from SNP 89552 to 90152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,992 DEBUG Processing 141/724 atomic regions from SNP 42140 to 42741 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,197 DEBUG Processing 300/669 atomic regions from SNP 89852 to 90452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,209 DEBUG Subchromosome time: 216.90968800103292, subchromosome SNPs: 212101 2025-01-31 09:53:08,210 DEBUG Estimated BADs: [1.56, 7.78, 0.52, 3.11, 0.52, 9.34, 0.52, 6.23, 0.78, 9.34, 1.56, 0.00, 0.78, 4.67, 0.78, 4.67, 0.52, 1.56, 4.67, 0.78, 3.11, 10.90, 4.67, 0.52, 1.56, 0.78, 0.31, 1.56, 0.52, 1.56, 0.52, 1.56, 0.78, 4.67, 1.56, 0.31, 1.56, 0.78, 0.31, 1.56, 3.11, 0.78, 1.56, 3.11, 7.78, 1.56, 7.78, 3.11] SNP counts: [1934, 1231, 860, 2533, 3966, 315, 3319, 2304, 2459, 1374, 629, 34, 1482, 2984, 1860, 6972, 2088, 8196, 359, 7656, 1826, 1668, 2820, 1771, 3035, 3405, 5867, 1500, 11631, 9404, 8082, 5399, 4883, 3332, 7130, 5945, 3930, 4439, 3919, 5732, 8370, 7503, 31808, 1803, 2690, 24143, 1364, 7105] SNP IDs counts: [1934, 1231, 860, 2533, 3966, 315, 3319, 2304, 2459, 1374, 629, 34, 1482, 2984, 1860, 6972, 2088, 8196, 359, 7656, 1826, 1668, 2820, 1771, 3035, 3405, 5867, 1500, 11631, 9404, 8082, 5399, 4883, 3332, 7130, 5945, 3930, 4439, 3919, 5732, 8370, 7503, 31808, 1803, 2690, 24143, 1364, 7105] Critical gap: 667747bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.44Mbp, 5.12Mbp, 5.74Mbp, 7.30Mbp, 12.90Mbp, 13.06Mbp, 15.90Mbp, 17.11Mbp, 19.00Mbp, 19.72Mbp, 20.10Mbp[0.68Mbp], 21.44Mbp[1.32Mbp], 24.29Mbp, 25.93Mbp, 27.17Mbp, 30.97Mbp, 33.68Mbp, 38.09Mbp, 38.27Mbp, 43.81Mbp, 44.81Mbp, 45.68Mbp, 47.16Mbp, 48.32Mbp, 49.98Mbp, 52.02Mbp, 55.51Mbp, 56.40Mbp, 63.89Mbp, 68.99Mbp, 73.50Mbp, 76.53Mbp, 79.24Mbp, 80.99Mbp, 84.89Mbp, 88.48Mbp, 90.70Mbp, 93.22Mbp, 95.55Mbp, 98.66Mbp, 103.11Mbp, 108.14Mbp, 125.39Mbp, 126.34Mbp, 127.77Mbp, 140.80Mbp, 141.52Mbp, 145.44Mbp] 2025-01-31 09:53:08,210 DEBUG chr7 time: 216.91044931008946 s 2025-01-31 09:53:08,213 DEBUG Processing 142/724 atomic regions from SNP 42441 to 43042 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,331 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:53:08,333 DEBUG chr11: Signal quantile: 0.983. signal threshold: 12. Best RMSEA: 0.013 2025-01-31 09:53:08,389 DEBUG chr7: Fitting background model for 47 segments 2025-01-31 09:53:08,437 DEBUG Processing 143/724 atomic regions from SNP 42742 to 43343 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,440 DEBUG Processing 301/669 atomic regions from SNP 90152 to 90752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,663 DEBUG Processing 144/724 atomic regions from SNP 43043 to 43644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,694 DEBUG Processing 302/669 atomic regions from SNP 90452 to 91052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,893 DEBUG Processing 145/724 atomic regions from SNP 43344 to 43945 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,927 DEBUG Processing 303/669 atomic regions from SNP 90752 to 91352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,124 DEBUG Processing 146/724 atomic regions from SNP 43645 to 44246 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,163 DEBUG Processing 304/669 atomic regions from SNP 91052 to 91652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,372 DEBUG Processing 147/724 atomic regions from SNP 43946 to 44547 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,413 DEBUG Processing 305/669 atomic regions from SNP 91352 to 91952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,606 DEBUG Processing 148/724 atomic regions from SNP 44247 to 44848 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,658 DEBUG Processing 306/669 atomic regions from SNP 91652 to 92252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,829 DEBUG Processing 149/724 atomic regions from SNP 44548 to 45149 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,892 DEBUG Processing 307/669 atomic regions from SNP 91952 to 92552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,049 DEBUG Processing 150/724 atomic regions from SNP 44849 to 45450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,121 DEBUG Processing 308/669 atomic regions from SNP 92252 to 92852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,271 DEBUG Processing 151/724 atomic regions from SNP 45150 to 45751 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,375 DEBUG Processing 309/669 atomic regions from SNP 92552 to 93152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,500 DEBUG Processing 152/724 atomic regions from SNP 45451 to 46052 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,632 DEBUG Processing 310/669 atomic regions from SNP 92852 to 93452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,717 DEBUG chr11 total SNP count: 212307 2025-01-31 09:53:10,718 DEBUG chr11 length: 122082543 2025-01-31 09:53:10,718 DEBUG ----------------------------------------- 2025-01-31 09:53:10,718 INFO Processing SNPs in chr11 2025-01-31 09:53:10,733 DEBUG Processing 153/724 atomic regions from SNP 45752 to 46353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,891 DEBUG Processing 311/669 atomic regions from SNP 93152 to 93752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,928 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 212307)] 2025-01-31 09:53:10,953 DEBUG Processing 154/724 atomic regions from SNP 46053 to 46654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,079 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:11,144 DEBUG Processing 312/669 atomic regions from SNP 93452 to 94052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,189 DEBUG Processing 155/724 atomic regions from SNP 46354 to 46955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,394 DEBUG Processing 313/669 atomic regions from SNP 93752 to 94352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,420 DEBUG Processing 156/724 atomic regions from SNP 46655 to 47256 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,620 DEBUG Processing 314/669 atomic regions from SNP 94052 to 94652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,649 DEBUG Processing 157/724 atomic regions from SNP 46956 to 47557 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,841 DEBUG Processing 315/669 atomic regions from SNP 94352 to 94952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,879 DEBUG Processing 158/724 atomic regions from SNP 47257 to 47858 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,076 DEBUG Processing 316/669 atomic regions from SNP 94652 to 95252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,114 DEBUG Processing 159/724 atomic regions from SNP 47558 to 48159 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,311 DEBUG Processing 317/669 atomic regions from SNP 94952 to 95552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,337 DEBUG Processing 160/724 atomic regions from SNP 47859 to 48460 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,531 DEBUG Processing 318/669 atomic regions from SNP 95252 to 95852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,555 DEBUG Processing 161/724 atomic regions from SNP 48160 to 48761 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,746 DEBUG Processing 319/669 atomic regions from SNP 95552 to 96152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,779 DEBUG Processing 162/724 atomic regions from SNP 48461 to 49062 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,986 DEBUG Processing 320/669 atomic regions from SNP 95852 to 96452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,999 DEBUG Processing 163/724 atomic regions from SNP 48762 to 49363 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,206 DEBUG Processing 321/669 atomic regions from SNP 96152 to 96752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,243 DEBUG Processing 164/724 atomic regions from SNP 49063 to 49664 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,426 DEBUG Processing 322/669 atomic regions from SNP 96452 to 97052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,478 DEBUG Processing 165/724 atomic regions from SNP 49364 to 49965 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,662 DEBUG Processing 323/669 atomic regions from SNP 96752 to 97352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,693 DEBUG Processing 166/724 atomic regions from SNP 49665 to 50266 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,906 DEBUG Processing 324/669 atomic regions from SNP 97052 to 97652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,907 DEBUG Processing 167/724 atomic regions from SNP 49966 to 50567 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,122 DEBUG Processing 168/724 atomic regions from SNP 50267 to 50868 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,153 DEBUG Processing 325/669 atomic regions from SNP 97352 to 97952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,348 DEBUG Processing 169/724 atomic regions from SNP 50568 to 51169 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,393 DEBUG Processing 326/669 atomic regions from SNP 97652 to 98252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,571 DEBUG Processing 170/724 atomic regions from SNP 50869 to 51470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,625 DEBUG Processing 327/669 atomic regions from SNP 97952 to 98552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,793 DEBUG Processing 171/724 atomic regions from SNP 51170 to 51771 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,867 DEBUG Processing 328/669 atomic regions from SNP 98252 to 98852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,013 DEBUG Processing 172/724 atomic regions from SNP 51471 to 52072 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,101 DEBUG Processing 329/669 atomic regions from SNP 98552 to 99152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,235 DEBUG Processing 173/724 atomic regions from SNP 51772 to 52373 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,330 DEBUG Processing 330/669 atomic regions from SNP 98852 to 99452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,459 DEBUG Processing 174/724 atomic regions from SNP 52073 to 52674 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,557 DEBUG Processing 331/669 atomic regions from SNP 99152 to 99752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,684 DEBUG Processing 175/724 atomic regions from SNP 52374 to 52975 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,782 DEBUG Processing 332/669 atomic regions from SNP 99452 to 100052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,912 DEBUG Processing 176/724 atomic regions from SNP 52675 to 53276 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,014 DEBUG Processing 333/669 atomic regions from SNP 99752 to 100352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,138 DEBUG Processing 177/724 atomic regions from SNP 52976 to 53577 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,241 DEBUG Processing 334/669 atomic regions from SNP 100052 to 100652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,369 DEBUG Processing 178/724 atomic regions from SNP 53277 to 53878 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,493 DEBUG Processing 335/669 atomic regions from SNP 100352 to 100952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,592 DEBUG Processing 179/724 atomic regions from SNP 53578 to 54179 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,742 DEBUG Processing 336/669 atomic regions from SNP 100652 to 101252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,821 DEBUG Processing 180/724 atomic regions from SNP 53879 to 54480 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,979 DEBUG Processing 337/669 atomic regions from SNP 100952 to 101552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,048 DEBUG Processing 181/724 atomic regions from SNP 54180 to 54781 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,204 DEBUG Processing 338/669 atomic regions from SNP 101252 to 101852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,271 DEBUG Processing 182/724 atomic regions from SNP 54481 to 55082 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,430 DEBUG Processing 339/669 atomic regions from SNP 101552 to 102152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,498 DEBUG Processing 183/724 atomic regions from SNP 54782 to 55383 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,652 DEBUG Processing 340/669 atomic regions from SNP 101852 to 102452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,725 DEBUG Processing 184/724 atomic regions from SNP 55083 to 55684 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,878 DEBUG Processing 341/669 atomic regions from SNP 102152 to 102752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,945 DEBUG Processing 185/724 atomic regions from SNP 55384 to 55985 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,116 DEBUG Processing 342/669 atomic regions from SNP 102452 to 103052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,174 DEBUG Processing 186/724 atomic regions from SNP 55685 to 56286 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,357 DEBUG Processing 343/669 atomic regions from SNP 102752 to 103352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,431 DEBUG Processing 187/724 atomic regions from SNP 55986 to 56587 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,602 DEBUG Processing 344/669 atomic regions from SNP 103052 to 103652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,689 DEBUG Processing 188/724 atomic regions from SNP 56287 to 56888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,837 DEBUG Processing 345/669 atomic regions from SNP 103352 to 103952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,926 DEBUG Processing 189/724 atomic regions from SNP 56588 to 57189 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,079 DEBUG Processing 346/669 atomic regions from SNP 103652 to 104252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,170 DEBUG Processing 190/724 atomic regions from SNP 56889 to 57490 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,311 DEBUG Processing 347/669 atomic regions from SNP 103952 to 104552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,404 DEBUG Processing 191/724 atomic regions from SNP 57190 to 57791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,536 DEBUG Processing 348/669 atomic regions from SNP 104252 to 104852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,645 DEBUG Processing 192/724 atomic regions from SNP 57491 to 58092 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,786 DEBUG Processing 349/669 atomic regions from SNP 104552 to 105152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,884 DEBUG Processing 193/724 atomic regions from SNP 57792 to 58393 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,042 DEBUG Processing 350/669 atomic regions from SNP 104852 to 105452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,124 DEBUG Processing 194/724 atomic regions from SNP 58093 to 58694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,275 DEBUG Processing 351/669 atomic regions from SNP 105152 to 105752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,364 DEBUG Processing 195/724 atomic regions from SNP 58394 to 58995 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,518 DEBUG Processing 352/669 atomic regions from SNP 105452 to 106052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,608 DEBUG Processing 196/724 atomic regions from SNP 58695 to 59296 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,772 DEBUG Processing 353/669 atomic regions from SNP 105752 to 106352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,840 DEBUG Processing 197/724 atomic regions from SNP 58996 to 59597 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,031 DEBUG Processing 354/669 atomic regions from SNP 106052 to 106652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,071 DEBUG Processing 198/724 atomic regions from SNP 59297 to 59898 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,294 DEBUG Processing 355/669 atomic regions from SNP 106352 to 106952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,303 DEBUG Processing 199/724 atomic regions from SNP 59598 to 60199 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,538 DEBUG Processing 200/724 atomic regions from SNP 59899 to 60500 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,540 DEBUG Processing 356/669 atomic regions from SNP 106652 to 107252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,770 DEBUG Processing 357/669 atomic regions from SNP 106952 to 107552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,781 DEBUG Processing 201/724 atomic regions from SNP 60200 to 60801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,993 DEBUG Processing 358/669 atomic regions from SNP 107252 to 107852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,010 DEBUG Processing 202/724 atomic regions from SNP 60501 to 61102 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,220 DEBUG Processing 359/669 atomic regions from SNP 107552 to 108152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,237 DEBUG Processing 203/724 atomic regions from SNP 60802 to 61403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,444 DEBUG Processing 360/669 atomic regions from SNP 107852 to 108452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,463 DEBUG Processing 204/724 atomic regions from SNP 61103 to 61704 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,668 DEBUG Processing 361/669 atomic regions from SNP 108152 to 108752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,687 DEBUG Processing 205/724 atomic regions from SNP 61404 to 62005 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,886 DEBUG Processing 362/669 atomic regions from SNP 108452 to 109052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,913 DEBUG Processing 206/724 atomic regions from SNP 61705 to 62306 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,109 DEBUG Processing 363/669 atomic regions from SNP 108752 to 109352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,144 DEBUG Processing 207/724 atomic regions from SNP 62006 to 62607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,333 DEBUG Processing 364/669 atomic regions from SNP 109052 to 109652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,376 DEBUG Processing 208/724 atomic regions from SNP 62307 to 62908 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,563 DEBUG Processing 365/669 atomic regions from SNP 109352 to 109952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,607 DEBUG Processing 209/724 atomic regions from SNP 62608 to 63209 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,802 DEBUG Processing 366/669 atomic regions from SNP 109652 to 110252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,832 DEBUG Processing 210/724 atomic regions from SNP 62909 to 63510 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,032 DEBUG Processing 367/669 atomic regions from SNP 109952 to 110552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,059 DEBUG Processing 211/724 atomic regions from SNP 63210 to 63811 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,258 DEBUG Processing 368/669 atomic regions from SNP 110252 to 110852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,277 DEBUG Processing 212/724 atomic regions from SNP 63511 to 64112 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,483 DEBUG Processing 369/669 atomic regions from SNP 110552 to 111152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,498 DEBUG Processing 213/724 atomic regions from SNP 63812 to 64413 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,725 DEBUG Processing 370/669 atomic regions from SNP 110852 to 111452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,731 DEBUG Processing 214/724 atomic regions from SNP 64113 to 64714 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,954 DEBUG Processing 215/724 atomic regions from SNP 64414 to 65015 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,963 DEBUG Processing 371/669 atomic regions from SNP 111152 to 111752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,174 DEBUG Processing 216/724 atomic regions from SNP 64715 to 65316 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,209 DEBUG Processing 372/669 atomic regions from SNP 111452 to 112052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,399 DEBUG Processing 217/724 atomic regions from SNP 65016 to 65617 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,465 DEBUG Processing 373/669 atomic regions from SNP 111752 to 112352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,627 DEBUG Processing 218/724 atomic regions from SNP 65317 to 65918 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,692 DEBUG Processing 374/669 atomic regions from SNP 112052 to 112652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,848 DEBUG Processing 219/724 atomic regions from SNP 65618 to 66219 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,916 DEBUG Processing 375/669 atomic regions from SNP 112352 to 112952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,100 DEBUG Processing 220/724 atomic regions from SNP 65919 to 66520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,157 DEBUG Processing 376/669 atomic regions from SNP 112652 to 113252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,344 DEBUG Processing 221/724 atomic regions from SNP 66220 to 66821 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,390 DEBUG Processing 377/669 atomic regions from SNP 112952 to 113552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,576 DEBUG Processing 222/724 atomic regions from SNP 66521 to 67122 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,617 DEBUG Processing 378/669 atomic regions from SNP 113252 to 113852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,807 DEBUG Processing 223/724 atomic regions from SNP 66822 to 67423 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,849 DEBUG Processing 379/669 atomic regions from SNP 113552 to 114152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,043 DEBUG Processing 224/724 atomic regions from SNP 67123 to 67724 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,084 DEBUG Processing 380/669 atomic regions from SNP 113852 to 114452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,287 DEBUG Processing 225/724 atomic regions from SNP 67424 to 68025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,323 DEBUG Processing 381/669 atomic regions from SNP 114152 to 114752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,529 DEBUG Processing 226/724 atomic regions from SNP 67725 to 68326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,580 DEBUG Processing 382/669 atomic regions from SNP 114452 to 115052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,763 DEBUG Processing 227/724 atomic regions from SNP 68026 to 68627 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,825 DEBUG Processing 383/669 atomic regions from SNP 114752 to 115352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,001 DEBUG Processing 228/724 atomic regions from SNP 68327 to 68928 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,058 DEBUG Processing 384/669 atomic regions from SNP 115052 to 115652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,248 DEBUG Processing 229/724 atomic regions from SNP 68628 to 69229 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,298 DEBUG Processing 385/669 atomic regions from SNP 115352 to 115952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,489 DEBUG Processing 230/724 atomic regions from SNP 68929 to 69530 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,539 DEBUG Processing 386/669 atomic regions from SNP 115652 to 116252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,721 DEBUG Processing 231/724 atomic regions from SNP 69230 to 69831 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,790 DEBUG Processing 387/669 atomic regions from SNP 115952 to 116552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,960 DEBUG Processing 232/724 atomic regions from SNP 69531 to 70132 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,029 DEBUG Processing 388/669 atomic regions from SNP 116252 to 116852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,193 DEBUG Processing 233/724 atomic regions from SNP 69832 to 70433 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,279 DEBUG Processing 389/669 atomic regions from SNP 116552 to 117152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,430 DEBUG Processing 234/724 atomic regions from SNP 70133 to 70734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,506 DEBUG Processing 390/669 atomic regions from SNP 116852 to 117452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,688 DEBUG Processing 235/724 atomic regions from SNP 70434 to 71035 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,746 DEBUG Processing 391/669 atomic regions from SNP 117152 to 117752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,948 DEBUG Processing 236/724 atomic regions from SNP 70735 to 71336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,970 DEBUG Processing 392/669 atomic regions from SNP 117452 to 118052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,173 DEBUG Processing 237/724 atomic regions from SNP 71036 to 71637 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,190 DEBUG Processing 393/669 atomic regions from SNP 117752 to 118352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,397 DEBUG Processing 238/724 atomic regions from SNP 71337 to 71938 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,409 DEBUG Processing 394/669 atomic regions from SNP 118052 to 118652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,635 DEBUG Processing 239/724 atomic regions from SNP 71638 to 72239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,645 DEBUG Processing 395/669 atomic regions from SNP 118352 to 118952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,870 DEBUG Processing 396/669 atomic regions from SNP 118652 to 119252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,877 DEBUG Processing 240/724 atomic regions from SNP 71939 to 72540 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,103 DEBUG Processing 397/669 atomic regions from SNP 118952 to 119552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,135 DEBUG Processing 241/724 atomic regions from SNP 72240 to 72841 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,334 DEBUG Processing 398/669 atomic regions from SNP 119252 to 119852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,390 DEBUG Processing 242/724 atomic regions from SNP 72541 to 73142 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,551 DEBUG Processing 399/669 atomic regions from SNP 119552 to 120152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,646 DEBUG Processing 243/724 atomic regions from SNP 72842 to 73443 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,777 DEBUG Processing 400/669 atomic regions from SNP 119852 to 120452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,901 DEBUG Processing 244/724 atomic regions from SNP 73143 to 73744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,008 DEBUG Processing 401/669 atomic regions from SNP 120152 to 120752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,150 DEBUG Processing 245/724 atomic regions from SNP 73444 to 74044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,235 DEBUG Processing 402/669 atomic regions from SNP 120452 to 121052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,406 DEBUG Processing 246/724 atomic regions from SNP 73744 to 74344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,465 DEBUG Processing 403/669 atomic regions from SNP 120752 to 121352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,642 DEBUG Processing 247/724 atomic regions from SNP 74044 to 74644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,696 DEBUG Processing 404/669 atomic regions from SNP 121052 to 121652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,877 DEBUG Processing 248/724 atomic regions from SNP 74344 to 74944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,937 DEBUG Processing 405/669 atomic regions from SNP 121352 to 121952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,105 DEBUG Processing 249/724 atomic regions from SNP 74644 to 75244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,170 DEBUG Processing 406/669 atomic regions from SNP 121652 to 122252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,337 DEBUG Processing 250/724 atomic regions from SNP 74944 to 75544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,398 DEBUG Processing 407/669 atomic regions from SNP 121952 to 122552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,577 DEBUG Processing 251/724 atomic regions from SNP 75244 to 75844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,658 DEBUG Processing 408/669 atomic regions from SNP 122252 to 122852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,828 DEBUG Processing 252/724 atomic regions from SNP 75544 to 76144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,919 DEBUG Processing 409/669 atomic regions from SNP 122552 to 123152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,079 DEBUG Processing 253/724 atomic regions from SNP 75844 to 76444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,178 DEBUG Processing 410/669 atomic regions from SNP 122852 to 123452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,310 DEBUG Processing 254/724 atomic regions from SNP 76144 to 76744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,412 DEBUG Processing 411/669 atomic regions from SNP 123152 to 123752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,537 DEBUG Processing 255/724 atomic regions from SNP 76444 to 77044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,652 DEBUG Processing 412/669 atomic regions from SNP 123452 to 124052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,768 DEBUG Processing 256/724 atomic regions from SNP 76744 to 77344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,896 DEBUG Processing 413/669 atomic regions from SNP 123752 to 124352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,997 DEBUG Processing 257/724 atomic regions from SNP 77044 to 77644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,131 DEBUG Processing 414/669 atomic regions from SNP 124052 to 124652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,226 DEBUG Processing 258/724 atomic regions from SNP 77344 to 77944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,366 DEBUG Processing 415/669 atomic regions from SNP 124352 to 124952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,454 DEBUG Processing 259/724 atomic regions from SNP 77644 to 78244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,610 DEBUG Processing 416/669 atomic regions from SNP 124652 to 125252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,686 DEBUG Processing 260/724 atomic regions from SNP 77944 to 78544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,847 DEBUG Processing 417/669 atomic regions from SNP 124952 to 125552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,909 DEBUG Processing 261/724 atomic regions from SNP 78244 to 78844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,085 DEBUG Processing 418/669 atomic regions from SNP 125252 to 125852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,137 DEBUG Processing 262/724 atomic regions from SNP 78544 to 79144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,321 DEBUG Processing 419/669 atomic regions from SNP 125552 to 126152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,371 DEBUG Processing 263/724 atomic regions from SNP 78844 to 79444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,564 DEBUG Processing 420/669 atomic regions from SNP 125852 to 126452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,606 DEBUG Processing 264/724 atomic regions from SNP 79144 to 79744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,798 DEBUG Processing 421/669 atomic regions from SNP 126152 to 126752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,836 DEBUG Processing 265/724 atomic regions from SNP 79444 to 80044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,025 DEBUG Processing 422/669 atomic regions from SNP 126452 to 127052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,060 DEBUG Processing 266/724 atomic regions from SNP 79744 to 80344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,257 DEBUG Processing 423/669 atomic regions from SNP 126752 to 127352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,287 DEBUG Processing 267/724 atomic regions from SNP 80044 to 80644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,361 DEBUG Segmenting atomic regions: 2025-01-31 09:53:37,453 DEBUG Processing 1/706 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,489 DEBUG Processing 424/669 atomic regions from SNP 127052 to 127652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,508 DEBUG Processing 268/724 atomic regions from SNP 80344 to 80944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,702 DEBUG Processing 2/706 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,726 DEBUG Processing 425/669 atomic regions from SNP 127352 to 127952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,740 DEBUG Processing 269/724 atomic regions from SNP 80644 to 81244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,938 DEBUG Processing 3/706 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,960 DEBUG Processing 426/669 atomic regions from SNP 127652 to 128252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,966 DEBUG Processing 270/724 atomic regions from SNP 80944 to 81544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,169 DEBUG Processing 4/706 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,193 DEBUG Processing 271/724 atomic regions from SNP 81244 to 81844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,197 DEBUG Processing 427/669 atomic regions from SNP 127952 to 128552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,398 DEBUG Processing 5/706 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,417 DEBUG Processing 272/724 atomic regions from SNP 81544 to 82144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,432 DEBUG Processing 428/669 atomic regions from SNP 128252 to 128852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,544 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:53:38,635 DEBUG Processing 6/706 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,647 DEBUG Processing 273/724 atomic regions from SNP 81844 to 82444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,666 DEBUG Processing 429/669 atomic regions from SNP 128552 to 129152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,871 DEBUG Processing 274/724 atomic regions from SNP 82144 to 82744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,882 DEBUG Processing 7/706 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,900 DEBUG Processing 430/669 atomic regions from SNP 128852 to 129452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,095 DEBUG Processing 275/724 atomic regions from SNP 82444 to 83044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,129 DEBUG Processing 8/706 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,134 DEBUG Processing 431/669 atomic regions from SNP 129152 to 129752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,323 DEBUG Processing 276/724 atomic regions from SNP 82744 to 83344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,357 DEBUG Processing 9/706 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,369 DEBUG Processing 432/669 atomic regions from SNP 129452 to 130052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,570 DEBUG Processing 277/724 atomic regions from SNP 83044 to 83644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,585 DEBUG Processing 10/706 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,618 DEBUG Processing 433/669 atomic regions from SNP 129752 to 130352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,800 DEBUG Processing 278/724 atomic regions from SNP 83344 to 83944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,827 DEBUG Processing 11/706 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,853 DEBUG Processing 434/669 atomic regions from SNP 130052 to 130652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,025 DEBUG Processing 279/724 atomic regions from SNP 83644 to 84244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,076 DEBUG Processing 12/706 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,084 DEBUG Processing 435/669 atomic regions from SNP 130352 to 130952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,243 DEBUG Processing 280/724 atomic regions from SNP 83944 to 84544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,317 DEBUG Processing 436/669 atomic regions from SNP 130652 to 131252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,330 DEBUG Processing 13/706 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,464 DEBUG Processing 281/724 atomic regions from SNP 84244 to 84844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,559 DEBUG Processing 437/669 atomic regions from SNP 130952 to 131552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,577 DEBUG Processing 14/706 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,704 DEBUG Processing 282/724 atomic regions from SNP 84544 to 85144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,799 DEBUG Processing 438/669 atomic regions from SNP 131252 to 131852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,809 DEBUG Processing 15/706 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,959 DEBUG Processing 283/724 atomic regions from SNP 84844 to 85444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,041 DEBUG Processing 439/669 atomic regions from SNP 131552 to 132152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,051 DEBUG Processing 16/706 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,194 DEBUG Processing 284/724 atomic regions from SNP 85144 to 85744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,278 DEBUG Processing 440/669 atomic regions from SNP 131852 to 132452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,283 DEBUG Processing 17/706 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,415 DEBUG Processing 285/724 atomic regions from SNP 85444 to 86044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,506 DEBUG Processing 441/669 atomic regions from SNP 132152 to 132752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,526 DEBUG Processing 18/706 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,634 DEBUG Processing 286/724 atomic regions from SNP 85744 to 86344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,730 DEBUG Processing 442/669 atomic regions from SNP 132452 to 133052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,744 DEBUG Processing 19/706 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,854 DEBUG Processing 287/724 atomic regions from SNP 86044 to 86644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,959 DEBUG Processing 443/669 atomic regions from SNP 132752 to 133352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,991 DEBUG Processing 20/706 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,072 DEBUG Processing 288/724 atomic regions from SNP 86344 to 86944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,191 DEBUG Processing 444/669 atomic regions from SNP 133052 to 133652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,243 DEBUG Processing 21/706 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,301 DEBUG Processing 289/724 atomic regions from SNP 86644 to 87244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,421 DEBUG Processing 445/669 atomic regions from SNP 133352 to 133952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,494 DEBUG Processing 22/706 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,522 DEBUG Processing 290/724 atomic regions from SNP 86944 to 87544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,655 DEBUG Processing 446/669 atomic regions from SNP 133652 to 134252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,718 DEBUG Processing 23/706 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,747 DEBUG Processing 291/724 atomic regions from SNP 87244 to 87844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,880 DEBUG Processing 447/669 atomic regions from SNP 133952 to 134552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,928 DEBUG Processing 24/706 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,971 DEBUG Processing 292/724 atomic regions from SNP 87544 to 88144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,109 DEBUG Processing 448/669 atomic regions from SNP 134252 to 134852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,147 DEBUG Processing 25/706 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,194 DEBUG Processing 293/724 atomic regions from SNP 87844 to 88444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,338 DEBUG Processing 449/669 atomic regions from SNP 134552 to 135152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,364 DEBUG Processing 26/706 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,412 DEBUG Processing 294/724 atomic regions from SNP 88144 to 88744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,569 DEBUG Processing 450/669 atomic regions from SNP 134852 to 135452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,588 DEBUG Processing 27/706 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,627 DEBUG Processing 295/724 atomic regions from SNP 88444 to 89044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,799 DEBUG Processing 451/669 atomic regions from SNP 135152 to 135752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,811 DEBUG Processing 28/706 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,843 DEBUG Processing 296/724 atomic regions from SNP 88744 to 89344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,023 DEBUG Processing 452/669 atomic regions from SNP 135452 to 136052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,029 DEBUG Processing 29/706 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,054 DEBUG Processing 297/724 atomic regions from SNP 89044 to 89644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,255 DEBUG Processing 30/706 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,258 DEBUG Processing 453/669 atomic regions from SNP 135752 to 136352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,267 DEBUG Processing 298/724 atomic regions from SNP 89344 to 89944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,484 DEBUG Processing 31/706 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,490 DEBUG Processing 299/724 atomic regions from SNP 89644 to 90244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,496 DEBUG Processing 454/669 atomic regions from SNP 136052 to 136652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,705 DEBUG Processing 32/706 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,707 DEBUG Processing 300/724 atomic regions from SNP 89944 to 90544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,726 DEBUG Processing 455/669 atomic regions from SNP 136352 to 136952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,924 DEBUG Processing 301/724 atomic regions from SNP 90244 to 90844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,930 DEBUG Processing 33/706 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,960 DEBUG Processing 456/669 atomic regions from SNP 136652 to 137252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,148 DEBUG Processing 302/724 atomic regions from SNP 90544 to 91144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,156 DEBUG Processing 34/706 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,196 DEBUG Processing 457/669 atomic regions from SNP 136952 to 137552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,373 DEBUG Processing 303/724 atomic regions from SNP 90844 to 91444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,379 DEBUG Processing 35/706 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,428 DEBUG Processing 458/669 atomic regions from SNP 137252 to 137852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,591 DEBUG Processing 304/724 atomic regions from SNP 91144 to 91744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,599 DEBUG Processing 36/706 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,653 DEBUG Processing 459/669 atomic regions from SNP 137552 to 138152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,828 DEBUG Processing 37/706 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,838 DEBUG Processing 305/724 atomic regions from SNP 91444 to 92044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,881 DEBUG Processing 460/669 atomic regions from SNP 137852 to 138452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,053 DEBUG Processing 38/706 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,087 DEBUG Processing 306/724 atomic regions from SNP 91744 to 92344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,115 DEBUG Processing 461/669 atomic regions from SNP 138152 to 138752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,277 DEBUG Processing 39/706 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,332 DEBUG Processing 307/724 atomic regions from SNP 92044 to 92644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,351 DEBUG Processing 462/669 atomic regions from SNP 138452 to 139052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,492 DEBUG Processing 40/706 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,557 DEBUG Processing 308/724 atomic regions from SNP 92344 to 92944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,594 DEBUG Processing 463/669 atomic regions from SNP 138752 to 139352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,712 DEBUG Processing 41/706 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,783 DEBUG Processing 309/724 atomic regions from SNP 92644 to 93244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,833 DEBUG Processing 464/669 atomic regions from SNP 139052 to 139652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,935 DEBUG Processing 42/706 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,008 DEBUG Processing 310/724 atomic regions from SNP 92944 to 93544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,064 DEBUG Processing 465/669 atomic regions from SNP 139352 to 139952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,157 DEBUG Processing 43/706 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,223 DEBUG Processing 311/724 atomic regions from SNP 93244 to 93844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,287 DEBUG Processing 466/669 atomic regions from SNP 139652 to 140252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,379 DEBUG Processing 44/706 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,436 DEBUG Processing 312/724 atomic regions from SNP 93544 to 94144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,518 DEBUG Processing 467/669 atomic regions from SNP 139952 to 140552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,605 DEBUG Processing 45/706 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,651 DEBUG Processing 313/724 atomic regions from SNP 93844 to 94444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,761 DEBUG Processing 468/669 atomic regions from SNP 140252 to 140852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,829 DEBUG Processing 46/706 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,865 DEBUG Processing 314/724 atomic regions from SNP 94144 to 94744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,991 DEBUG Processing 469/669 atomic regions from SNP 140552 to 141152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,054 DEBUG Processing 47/706 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,084 DEBUG Processing 315/724 atomic regions from SNP 94444 to 95044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,220 DEBUG Processing 470/669 atomic regions from SNP 140852 to 141452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,281 DEBUG Processing 48/706 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,303 DEBUG Processing 316/724 atomic regions from SNP 94744 to 95344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,451 DEBUG Processing 471/669 atomic regions from SNP 141152 to 141752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,505 DEBUG Processing 49/706 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,524 DEBUG Processing 317/724 atomic regions from SNP 95044 to 95644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,683 DEBUG Processing 472/669 atomic regions from SNP 141452 to 142052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,725 DEBUG Processing 50/706 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,738 DEBUG Processing 318/724 atomic regions from SNP 95344 to 95944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,914 DEBUG Processing 473/669 atomic regions from SNP 141752 to 142352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,957 DEBUG Processing 51/706 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,962 DEBUG Processing 319/724 atomic regions from SNP 95644 to 96244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,141 DEBUG Processing 474/669 atomic regions from SNP 142052 to 142652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,180 DEBUG Processing 52/706 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,204 DEBUG Processing 320/724 atomic regions from SNP 95944 to 96544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,370 DEBUG Processing 475/669 atomic regions from SNP 142352 to 142952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,403 DEBUG Processing 53/706 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,460 DEBUG Processing 321/724 atomic regions from SNP 96244 to 96844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,609 DEBUG Processing 476/669 atomic regions from SNP 142652 to 143252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,628 DEBUG Processing 54/706 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,699 DEBUG Processing 322/724 atomic regions from SNP 96544 to 97144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,839 DEBUG Processing 477/669 atomic regions from SNP 142952 to 143552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,850 DEBUG Processing 55/706 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,952 DEBUG Processing 323/724 atomic regions from SNP 96844 to 97444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,063 DEBUG Processing 478/669 atomic regions from SNP 143252 to 143852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,068 DEBUG Processing 56/706 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,203 DEBUG Processing 324/724 atomic regions from SNP 97144 to 97744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,287 DEBUG Processing 57/706 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,289 DEBUG Processing 479/669 atomic regions from SNP 143552 to 144152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,460 DEBUG Processing 325/724 atomic regions from SNP 97444 to 98044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,513 DEBUG Processing 58/706 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,524 DEBUG Processing 480/669 atomic regions from SNP 143852 to 144452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,709 DEBUG Processing 326/724 atomic regions from SNP 97744 to 98344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,744 DEBUG Processing 59/706 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,759 DEBUG Processing 481/669 atomic regions from SNP 144152 to 144752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,952 DEBUG Processing 327/724 atomic regions from SNP 98044 to 98644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,979 DEBUG Processing 60/706 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,995 DEBUG Processing 482/669 atomic regions from SNP 144452 to 145052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,199 DEBUG Processing 328/724 atomic regions from SNP 98344 to 98944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,212 DEBUG Processing 61/706 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,231 DEBUG Processing 483/669 atomic regions from SNP 144752 to 145352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,453 DEBUG Processing 329/724 atomic regions from SNP 98644 to 99244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,464 DEBUG Processing 62/706 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,480 DEBUG Processing 484/669 atomic regions from SNP 145052 to 145652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,691 DEBUG Processing 63/706 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,698 DEBUG Processing 330/724 atomic regions from SNP 98944 to 99544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,713 DEBUG Processing 485/669 atomic regions from SNP 145352 to 145952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,920 DEBUG Processing 64/706 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,950 DEBUG Processing 331/724 atomic regions from SNP 99244 to 99844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,952 DEBUG Processing 486/669 atomic regions from SNP 145652 to 146252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,147 DEBUG Processing 65/706 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,186 DEBUG Processing 487/669 atomic regions from SNP 145952 to 146552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,197 DEBUG Processing 332/724 atomic regions from SNP 99544 to 100144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,377 DEBUG Processing 66/706 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,418 DEBUG Processing 333/724 atomic regions from SNP 99844 to 100444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,422 DEBUG Processing 488/669 atomic regions from SNP 146252 to 146852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,606 DEBUG Processing 67/706 atomic regions from SNP 19866 to 20467 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,636 DEBUG Processing 334/724 atomic regions from SNP 100144 to 100744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,664 DEBUG Processing 489/669 atomic regions from SNP 146552 to 147152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,839 DEBUG Processing 68/706 atomic regions from SNP 20167 to 20768 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,874 DEBUG Processing 335/724 atomic regions from SNP 100444 to 101044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,900 DEBUG Processing 490/669 atomic regions from SNP 146852 to 147452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,073 DEBUG Processing 69/706 atomic regions from SNP 20468 to 21069 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,110 DEBUG Processing 336/724 atomic regions from SNP 100744 to 101344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,137 DEBUG Processing 491/669 atomic regions from SNP 147152 to 147752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,317 DEBUG Processing 70/706 atomic regions from SNP 20769 to 21370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,370 DEBUG Processing 492/669 atomic regions from SNP 147452 to 148052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,373 DEBUG Processing 337/724 atomic regions from SNP 101044 to 101644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,555 DEBUG Processing 71/706 atomic regions from SNP 21070 to 21671 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,606 DEBUG Processing 493/669 atomic regions from SNP 147752 to 148352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,624 DEBUG Processing 338/724 atomic regions from SNP 101344 to 101944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,793 DEBUG Processing 72/706 atomic regions from SNP 21371 to 21972 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,854 DEBUG Processing 494/669 atomic regions from SNP 148052 to 148652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,856 DEBUG Processing 339/724 atomic regions from SNP 101644 to 102244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,027 DEBUG Processing 73/706 atomic regions from SNP 21672 to 22273 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,083 DEBUG Processing 340/724 atomic regions from SNP 101944 to 102544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,090 DEBUG Processing 495/669 atomic regions from SNP 148352 to 148952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,248 DEBUG Processing 74/706 atomic regions from SNP 21973 to 22574 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,301 DEBUG Processing 341/724 atomic regions from SNP 102244 to 102844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,326 DEBUG Processing 496/669 atomic regions from SNP 148652 to 149252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,470 DEBUG Processing 75/706 atomic regions from SNP 22274 to 22875 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,508 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:53:54,509 DEBUG chr13: Signal quantile: 0.989. signal threshold: 13. Best RMSEA: 0.012 2025-01-31 09:53:54,522 DEBUG Processing 342/724 atomic regions from SNP 102544 to 103144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,556 DEBUG Processing 497/669 atomic regions from SNP 148952 to 149552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,691 DEBUG Processing 76/706 atomic regions from SNP 22575 to 23176 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,743 DEBUG Processing 343/724 atomic regions from SNP 102844 to 103444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,792 DEBUG Processing 498/669 atomic regions from SNP 149252 to 149852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,918 DEBUG Processing 77/706 atomic regions from SNP 22876 to 23477 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,960 DEBUG Processing 344/724 atomic regions from SNP 103144 to 103744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,037 DEBUG Processing 499/669 atomic regions from SNP 149552 to 150152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,164 DEBUG Processing 78/706 atomic regions from SNP 23177 to 23778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,181 DEBUG Processing 345/724 atomic regions from SNP 103444 to 104044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,274 DEBUG Processing 500/669 atomic regions from SNP 149852 to 150452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,392 DEBUG Processing 79/706 atomic regions from SNP 23478 to 24079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,404 DEBUG Processing 346/724 atomic regions from SNP 103744 to 104344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,506 DEBUG Processing 501/669 atomic regions from SNP 150152 to 150752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,621 DEBUG Processing 80/706 atomic regions from SNP 23779 to 24380 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,641 DEBUG Processing 347/724 atomic regions from SNP 104044 to 104644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,748 DEBUG Processing 502/669 atomic regions from SNP 150452 to 151052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,856 DEBUG Processing 81/706 atomic regions from SNP 24080 to 24681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,892 DEBUG Processing 348/724 atomic regions from SNP 104344 to 104944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,980 DEBUG Processing 503/669 atomic regions from SNP 150752 to 151352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,079 DEBUG Processing 82/706 atomic regions from SNP 24381 to 24982 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,118 DEBUG Processing 349/724 atomic regions from SNP 104644 to 105244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,206 DEBUG Processing 504/669 atomic regions from SNP 151052 to 151652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,301 DEBUG Processing 83/706 atomic regions from SNP 24682 to 25283 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,335 DEBUG Processing 350/724 atomic regions from SNP 104944 to 105544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,442 DEBUG Processing 505/669 atomic regions from SNP 151352 to 151952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,527 DEBUG Processing 84/706 atomic regions from SNP 24983 to 25584 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,574 DEBUG Processing 351/724 atomic regions from SNP 105244 to 105844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,684 DEBUG Processing 506/669 atomic regions from SNP 151652 to 152252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,745 DEBUG chr13 total SNP count: 203671 2025-01-31 09:53:56,745 DEBUG chr13 length: 120421639 2025-01-31 09:53:56,745 DEBUG ----------------------------------------- 2025-01-31 09:53:56,745 INFO Processing SNPs in chr13 2025-01-31 09:53:56,753 DEBUG Processing 85/706 atomic regions from SNP 25284 to 25885 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,824 DEBUG Processing 352/724 atomic regions from SNP 105544 to 106144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,906 DEBUG Processing 507/669 atomic regions from SNP 151952 to 152552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,961 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 203671)] 2025-01-31 09:53:56,976 DEBUG Processing 86/706 atomic regions from SNP 25585 to 26186 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,064 DEBUG Processing 353/724 atomic regions from SNP 105844 to 106444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,106 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:57,125 DEBUG Processing 508/669 atomic regions from SNP 152252 to 152852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,201 DEBUG Processing 87/706 atomic regions from SNP 25886 to 26487 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,314 DEBUG Processing 354/724 atomic regions from SNP 106144 to 106744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,348 DEBUG Processing 509/669 atomic regions from SNP 152552 to 153152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,422 DEBUG Processing 88/706 atomic regions from SNP 26187 to 26788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,561 DEBUG Processing 355/724 atomic regions from SNP 106444 to 107044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,569 DEBUG Processing 510/669 atomic regions from SNP 152852 to 153452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,642 DEBUG Processing 89/706 atomic regions from SNP 26488 to 27089 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,788 DEBUG Processing 356/724 atomic regions from SNP 106744 to 107344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,796 DEBUG Processing 511/669 atomic regions from SNP 153152 to 153752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,860 DEBUG Processing 90/706 atomic regions from SNP 26789 to 27390 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,022 DEBUG Processing 512/669 atomic regions from SNP 153452 to 154052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,041 DEBUG Processing 357/724 atomic regions from SNP 107044 to 107644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,077 DEBUG Processing 91/706 atomic regions from SNP 27090 to 27691 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,251 DEBUG Processing 513/669 atomic regions from SNP 153752 to 154352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,282 DEBUG Processing 358/724 atomic regions from SNP 107344 to 107944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,297 DEBUG Processing 92/706 atomic regions from SNP 27391 to 27992 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,487 DEBUG Processing 514/669 atomic regions from SNP 154052 to 154652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,521 DEBUG Processing 93/706 atomic regions from SNP 27692 to 28293 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,525 DEBUG Processing 359/724 atomic regions from SNP 107644 to 108244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,719 DEBUG Processing 515/669 atomic regions from SNP 154352 to 154952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,751 DEBUG Processing 94/706 atomic regions from SNP 27993 to 28594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,761 DEBUG Processing 360/724 atomic regions from SNP 107944 to 108544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,949 DEBUG Processing 516/669 atomic regions from SNP 154652 to 155252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,973 DEBUG Processing 95/706 atomic regions from SNP 28294 to 28895 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,988 DEBUG Processing 361/724 atomic regions from SNP 108244 to 108844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,181 DEBUG Processing 517/669 atomic regions from SNP 154952 to 155552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,191 DEBUG Processing 96/706 atomic regions from SNP 28595 to 29196 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,220 DEBUG Processing 362/724 atomic regions from SNP 108544 to 109144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,411 DEBUG Processing 518/669 atomic regions from SNP 155252 to 155852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,413 DEBUG Processing 97/706 atomic regions from SNP 28896 to 29497 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,470 DEBUG Processing 363/724 atomic regions from SNP 108844 to 109444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,640 DEBUG Processing 519/669 atomic regions from SNP 155552 to 156152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,644 DEBUG Processing 98/706 atomic regions from SNP 29197 to 29798 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,714 DEBUG Processing 364/724 atomic regions from SNP 109144 to 109744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,870 DEBUG Processing 520/669 atomic regions from SNP 155852 to 156452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,879 DEBUG Processing 99/706 atomic regions from SNP 29498 to 30099 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,983 DEBUG Processing 365/724 atomic regions from SNP 109444 to 110044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,117 DEBUG Processing 521/669 atomic regions from SNP 156152 to 156752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,120 DEBUG Processing 100/706 atomic regions from SNP 29799 to 30400 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,239 DEBUG Processing 366/724 atomic regions from SNP 109744 to 110344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,346 DEBUG Processing 101/706 atomic regions from SNP 30100 to 30701 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,355 DEBUG Processing 522/669 atomic regions from SNP 156452 to 157052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,494 DEBUG Processing 367/724 atomic regions from SNP 110044 to 110644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,569 DEBUG Processing 102/706 atomic regions from SNP 30401 to 31002 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,585 DEBUG Processing 523/669 atomic regions from SNP 156752 to 157352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,752 DEBUG Processing 368/724 atomic regions from SNP 110344 to 110944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,792 DEBUG Processing 103/706 atomic regions from SNP 30702 to 31303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,818 DEBUG Processing 524/669 atomic regions from SNP 157052 to 157652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,005 DEBUG Processing 369/724 atomic regions from SNP 110644 to 111244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,016 DEBUG Processing 104/706 atomic regions from SNP 31003 to 31604 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,055 DEBUG Processing 525/669 atomic regions from SNP 157352 to 157952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,249 DEBUG Processing 105/706 atomic regions from SNP 31304 to 31905 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,252 DEBUG Processing 370/724 atomic regions from SNP 110944 to 111544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,288 DEBUG Processing 526/669 atomic regions from SNP 157652 to 158252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,469 DEBUG Processing 106/706 atomic regions from SNP 31605 to 32206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,494 DEBUG Processing 371/724 atomic regions from SNP 111244 to 111844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,516 DEBUG Processing 527/669 atomic regions from SNP 157952 to 158552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,687 DEBUG Processing 107/706 atomic regions from SNP 31906 to 32507 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,741 DEBUG Processing 372/724 atomic regions from SNP 111544 to 112144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,748 DEBUG Processing 528/669 atomic regions from SNP 158252 to 158852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,910 DEBUG Processing 108/706 atomic regions from SNP 32207 to 32808 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,980 DEBUG Processing 529/669 atomic regions from SNP 158552 to 159152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,996 DEBUG Processing 373/724 atomic regions from SNP 111844 to 112444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,134 DEBUG Processing 109/706 atomic regions from SNP 32508 to 33109 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,212 DEBUG Processing 530/669 atomic regions from SNP 158852 to 159452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,254 DEBUG Processing 374/724 atomic regions from SNP 112144 to 112744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,364 DEBUG Processing 110/706 atomic regions from SNP 32809 to 33410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,448 DEBUG Processing 531/669 atomic regions from SNP 159152 to 159752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,513 DEBUG Processing 375/724 atomic regions from SNP 112444 to 113044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,589 DEBUG Processing 111/706 atomic regions from SNP 33110 to 33711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,687 DEBUG Processing 532/669 atomic regions from SNP 159452 to 160052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,749 DEBUG Processing 376/724 atomic regions from SNP 112744 to 113344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,809 DEBUG Processing 112/706 atomic regions from SNP 33411 to 34012 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,919 DEBUG Processing 533/669 atomic regions from SNP 159752 to 160352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,988 DEBUG Processing 377/724 atomic regions from SNP 113044 to 113644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,044 DEBUG Processing 113/706 atomic regions from SNP 33712 to 34313 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,150 DEBUG Processing 534/669 atomic regions from SNP 160052 to 160652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,228 DEBUG Processing 378/724 atomic regions from SNP 113344 to 113944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,294 DEBUG Processing 114/706 atomic regions from SNP 34013 to 34614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,381 DEBUG Processing 535/669 atomic regions from SNP 160352 to 160952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,475 DEBUG Processing 379/724 atomic regions from SNP 113644 to 114244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,541 DEBUG Processing 115/706 atomic regions from SNP 34314 to 34915 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,613 DEBUG Processing 536/669 atomic regions from SNP 160652 to 161252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,699 DEBUG Processing 380/724 atomic regions from SNP 113944 to 114544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,760 DEBUG Processing 116/706 atomic regions from SNP 34615 to 35216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,856 DEBUG Processing 537/669 atomic regions from SNP 160952 to 161552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,925 DEBUG Processing 381/724 atomic regions from SNP 114244 to 114844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,982 DEBUG Processing 117/706 atomic regions from SNP 34916 to 35517 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,087 DEBUG Processing 538/669 atomic regions from SNP 161252 to 161852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,155 DEBUG Processing 382/724 atomic regions from SNP 114544 to 115144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,205 DEBUG Processing 118/706 atomic regions from SNP 35217 to 35818 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,311 DEBUG Processing 539/669 atomic regions from SNP 161552 to 162152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,391 DEBUG Processing 383/724 atomic regions from SNP 114844 to 115444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,423 DEBUG Processing 119/706 atomic regions from SNP 35518 to 36119 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,534 DEBUG Processing 540/669 atomic regions from SNP 161852 to 162452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,636 DEBUG Processing 384/724 atomic regions from SNP 115144 to 115744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,644 DEBUG Processing 120/706 atomic regions from SNP 35819 to 36420 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,764 DEBUG Processing 541/669 atomic regions from SNP 162152 to 162752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,858 DEBUG Processing 385/724 atomic regions from SNP 115444 to 116044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,869 DEBUG Processing 121/706 atomic regions from SNP 36120 to 36721 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,993 DEBUG Processing 542/669 atomic regions from SNP 162452 to 163052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,078 DEBUG Processing 386/724 atomic regions from SNP 115744 to 116344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,090 DEBUG Processing 122/706 atomic regions from SNP 36421 to 37022 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,219 DEBUG Processing 543/669 atomic regions from SNP 162752 to 163352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,294 DEBUG Processing 387/724 atomic regions from SNP 116044 to 116644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,308 DEBUG Processing 123/706 atomic regions from SNP 36722 to 37323 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,446 DEBUG Processing 544/669 atomic regions from SNP 163052 to 163652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,513 DEBUG Processing 388/724 atomic regions from SNP 116344 to 116944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,531 DEBUG Processing 124/706 atomic regions from SNP 37023 to 37624 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,708 DEBUG Processing 545/669 atomic regions from SNP 163352 to 163952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,738 DEBUG Processing 389/724 atomic regions from SNP 116644 to 117244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,750 DEBUG Processing 125/706 atomic regions from SNP 37324 to 37925 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,947 DEBUG Processing 546/669 atomic regions from SNP 163652 to 164252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,955 DEBUG Processing 390/724 atomic regions from SNP 116944 to 117544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,969 DEBUG Processing 126/706 atomic regions from SNP 37625 to 38226 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,169 DEBUG Processing 547/669 atomic regions from SNP 163952 to 164552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,172 DEBUG Processing 391/724 atomic regions from SNP 117244 to 117844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,183 DEBUG Processing 127/706 atomic regions from SNP 37926 to 38527 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,396 DEBUG Processing 392/724 atomic regions from SNP 117544 to 118144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,399 DEBUG Processing 548/669 atomic regions from SNP 164252 to 164852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,404 DEBUG Processing 128/706 atomic regions from SNP 38227 to 38828 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,627 DEBUG Processing 393/724 atomic regions from SNP 117844 to 118444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,629 DEBUG Processing 129/706 atomic regions from SNP 38528 to 39129 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,632 DEBUG Processing 549/669 atomic regions from SNP 164552 to 165152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,853 DEBUG Processing 394/724 atomic regions from SNP 118144 to 118744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,857 DEBUG Processing 130/706 atomic regions from SNP 38829 to 39430 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,863 DEBUG Processing 550/669 atomic regions from SNP 164852 to 165452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,081 DEBUG Processing 395/724 atomic regions from SNP 118444 to 119044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,082 DEBUG Processing 131/706 atomic regions from SNP 39130 to 39731 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,094 DEBUG Processing 551/669 atomic regions from SNP 165152 to 165752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,307 DEBUG Processing 132/706 atomic regions from SNP 39431 to 40032 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,312 DEBUG Processing 396/724 atomic regions from SNP 118744 to 119344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,322 DEBUG Processing 552/669 atomic regions from SNP 165452 to 166052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,532 DEBUG Processing 133/706 atomic regions from SNP 39732 to 40333 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,544 DEBUG Processing 397/724 atomic regions from SNP 119044 to 119644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,557 DEBUG Processing 553/669 atomic regions from SNP 165752 to 166352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,756 DEBUG Processing 134/706 atomic regions from SNP 40033 to 40634 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,771 DEBUG Processing 398/724 atomic regions from SNP 119344 to 119944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,790 DEBUG Processing 554/669 atomic regions from SNP 166052 to 166652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,970 DEBUG Processing 135/706 atomic regions from SNP 40334 to 40935 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,998 DEBUG Processing 399/724 atomic regions from SNP 119644 to 120244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,015 DEBUG Processing 555/669 atomic regions from SNP 166352 to 166952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,181 DEBUG Processing 136/706 atomic regions from SNP 40635 to 41236 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,216 DEBUG Processing 400/724 atomic regions from SNP 119944 to 120544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,240 DEBUG Processing 556/669 atomic regions from SNP 166652 to 167252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,397 DEBUG Processing 137/706 atomic regions from SNP 40936 to 41537 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,436 DEBUG Processing 401/724 atomic regions from SNP 120244 to 120844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,464 DEBUG Processing 557/669 atomic regions from SNP 166952 to 167552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,612 DEBUG Processing 138/706 atomic regions from SNP 41237 to 41838 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,653 DEBUG Processing 402/724 atomic regions from SNP 120544 to 121144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,681 DEBUG Processing 558/669 atomic regions from SNP 167252 to 167852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,828 DEBUG Processing 139/706 atomic regions from SNP 41538 to 42139 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,870 DEBUG Processing 403/724 atomic regions from SNP 120844 to 121444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,896 DEBUG Processing 559/669 atomic regions from SNP 167552 to 168152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,050 DEBUG Processing 140/706 atomic regions from SNP 41839 to 42440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,087 DEBUG Processing 404/724 atomic regions from SNP 121144 to 121744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,114 DEBUG Processing 560/669 atomic regions from SNP 167852 to 168452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,274 DEBUG Processing 141/706 atomic regions from SNP 42140 to 42741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,311 DEBUG Processing 405/724 atomic regions from SNP 121444 to 122044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,336 DEBUG Processing 561/669 atomic regions from SNP 168152 to 168752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,501 DEBUG Processing 142/706 atomic regions from SNP 42441 to 43042 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,548 DEBUG Processing 406/724 atomic regions from SNP 121744 to 122344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,562 DEBUG Processing 562/669 atomic regions from SNP 168452 to 169052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,731 DEBUG Processing 143/706 atomic regions from SNP 42742 to 43343 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,785 DEBUG Processing 407/724 atomic regions from SNP 122044 to 122644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,794 DEBUG Processing 563/669 atomic regions from SNP 168752 to 169352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,958 DEBUG Processing 144/706 atomic regions from SNP 43043 to 43644 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,030 DEBUG Processing 564/669 atomic regions from SNP 169052 to 169652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,034 DEBUG Processing 408/724 atomic regions from SNP 122344 to 122944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,190 DEBUG Processing 145/706 atomic regions from SNP 43344 to 43945 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,267 DEBUG Processing 565/669 atomic regions from SNP 169352 to 169952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,271 DEBUG Processing 409/724 atomic regions from SNP 122644 to 123244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,411 DEBUG Processing 146/706 atomic regions from SNP 43645 to 44246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,501 DEBUG Processing 566/669 atomic regions from SNP 169652 to 170252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,506 DEBUG Processing 410/724 atomic regions from SNP 122944 to 123544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,627 DEBUG Processing 147/706 atomic regions from SNP 43946 to 44547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,727 DEBUG Processing 411/724 atomic regions from SNP 123244 to 123844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,732 DEBUG Processing 567/669 atomic regions from SNP 169952 to 170552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,849 DEBUG Processing 148/706 atomic regions from SNP 44247 to 44848 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,961 DEBUG Processing 568/669 atomic regions from SNP 170252 to 170852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,970 DEBUG Processing 412/724 atomic regions from SNP 123544 to 124144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,070 DEBUG Processing 149/706 atomic regions from SNP 44548 to 45149 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,186 DEBUG Processing 569/669 atomic regions from SNP 170552 to 171152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,198 DEBUG Processing 413/724 atomic regions from SNP 123844 to 124444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,290 DEBUG Processing 150/706 atomic regions from SNP 44849 to 45450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,418 DEBUG Processing 414/724 atomic regions from SNP 124144 to 124744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,423 DEBUG Processing 570/669 atomic regions from SNP 170852 to 171452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,514 DEBUG Processing 151/706 atomic regions from SNP 45150 to 45751 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,637 DEBUG Processing 415/724 atomic regions from SNP 124444 to 125044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,650 DEBUG Processing 571/669 atomic regions from SNP 171152 to 171752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,747 DEBUG Processing 152/706 atomic regions from SNP 45451 to 46052 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,863 DEBUG Processing 416/724 atomic regions from SNP 124744 to 125344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,881 DEBUG Processing 572/669 atomic regions from SNP 171452 to 172052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,971 DEBUG Processing 153/706 atomic regions from SNP 45752 to 46353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,111 DEBUG Processing 417/724 atomic regions from SNP 125044 to 125644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,115 DEBUG Processing 573/669 atomic regions from SNP 171752 to 172352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,191 DEBUG Processing 154/706 atomic regions from SNP 46053 to 46654 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,346 DEBUG Processing 574/669 atomic regions from SNP 172052 to 172652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,360 DEBUG Processing 418/724 atomic regions from SNP 125344 to 125944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,413 DEBUG Processing 155/706 atomic regions from SNP 46354 to 46955 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,581 DEBUG Processing 575/669 atomic regions from SNP 172352 to 172952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,611 DEBUG Processing 419/724 atomic regions from SNP 125644 to 126244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,635 DEBUG Processing 156/706 atomic regions from SNP 46655 to 47256 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,815 DEBUG Processing 576/669 atomic regions from SNP 172652 to 173252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,837 DEBUG Processing 420/724 atomic regions from SNP 125944 to 126544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,859 DEBUG Processing 157/706 atomic regions from SNP 46956 to 47557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,044 DEBUG Processing 577/669 atomic regions from SNP 172952 to 173552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,057 DEBUG Processing 421/724 atomic regions from SNP 126244 to 126844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,079 DEBUG Processing 158/706 atomic regions from SNP 47257 to 47858 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,271 DEBUG Processing 578/669 atomic regions from SNP 173252 to 173852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,280 DEBUG Processing 422/724 atomic regions from SNP 126544 to 127144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,299 DEBUG Processing 159/706 atomic regions from SNP 47558 to 48159 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,501 DEBUG Processing 579/669 atomic regions from SNP 173552 to 174152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,505 DEBUG Processing 423/724 atomic regions from SNP 126844 to 127444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,518 DEBUG Processing 160/706 atomic regions from SNP 47859 to 48460 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,726 DEBUG Processing 424/724 atomic regions from SNP 127144 to 127744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,733 DEBUG Processing 580/669 atomic regions from SNP 173852 to 174452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,738 DEBUG Processing 161/706 atomic regions from SNP 48160 to 48761 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,948 DEBUG Processing 425/724 atomic regions from SNP 127444 to 128044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,964 DEBUG Processing 162/706 atomic regions from SNP 48461 to 49062 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,968 DEBUG Processing 581/669 atomic regions from SNP 174152 to 174752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,168 DEBUG Processing 426/724 atomic regions from SNP 127744 to 128344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,186 DEBUG Processing 163/706 atomic regions from SNP 48762 to 49363 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,201 DEBUG Processing 582/669 atomic regions from SNP 174452 to 175052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,385 DEBUG Processing 427/724 atomic regions from SNP 128044 to 128644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,417 DEBUG Processing 164/706 atomic regions from SNP 49063 to 49664 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,433 DEBUG Processing 583/669 atomic regions from SNP 174752 to 175352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,606 DEBUG Processing 428/724 atomic regions from SNP 128344 to 128944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,659 DEBUG Processing 165/706 atomic regions from SNP 49364 to 49965 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,661 DEBUG Processing 584/669 atomic regions from SNP 175052 to 175652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,824 DEBUG Processing 429/724 atomic regions from SNP 128644 to 129244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,880 DEBUG Processing 166/706 atomic regions from SNP 49665 to 50266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,892 DEBUG Processing 585/669 atomic regions from SNP 175352 to 175952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,051 DEBUG Processing 430/724 atomic regions from SNP 128944 to 129544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,116 DEBUG Processing 586/669 atomic regions from SNP 175652 to 176252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,118 DEBUG Processing 167/706 atomic regions from SNP 49966 to 50567 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,273 DEBUG Processing 431/724 atomic regions from SNP 129244 to 129844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,348 DEBUG Processing 587/669 atomic regions from SNP 175952 to 176552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,365 DEBUG Processing 168/706 atomic regions from SNP 50267 to 50868 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,497 DEBUG Processing 432/724 atomic regions from SNP 129544 to 130144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,575 DEBUG Processing 588/669 atomic regions from SNP 176252 to 176852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,585 DEBUG Processing 169/706 atomic regions from SNP 50568 to 51169 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,719 DEBUG Processing 433/724 atomic regions from SNP 129844 to 130444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,804 DEBUG Processing 589/669 atomic regions from SNP 176552 to 177152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,804 DEBUG Processing 170/706 atomic regions from SNP 50869 to 51470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,946 DEBUG Processing 434/724 atomic regions from SNP 130144 to 130744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,024 DEBUG Processing 171/706 atomic regions from SNP 51170 to 51771 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,033 DEBUG Processing 590/669 atomic regions from SNP 176852 to 177452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,190 DEBUG Processing 435/724 atomic regions from SNP 130444 to 131044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,240 DEBUG Processing 172/706 atomic regions from SNP 51471 to 52072 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,259 DEBUG Processing 591/669 atomic regions from SNP 177152 to 177752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,443 DEBUG Processing 436/724 atomic regions from SNP 130744 to 131344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,456 DEBUG Processing 173/706 atomic regions from SNP 51772 to 52373 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,486 DEBUG Processing 592/669 atomic regions from SNP 177452 to 178052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,670 DEBUG Processing 437/724 atomic regions from SNP 131044 to 131644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,678 DEBUG Processing 174/706 atomic regions from SNP 52073 to 52674 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,719 DEBUG Processing 593/669 atomic regions from SNP 177752 to 178352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,891 DEBUG Processing 438/724 atomic regions from SNP 131344 to 131944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,903 DEBUG Processing 175/706 atomic regions from SNP 52374 to 52975 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,950 DEBUG Processing 594/669 atomic regions from SNP 178052 to 178652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,119 DEBUG Processing 439/724 atomic regions from SNP 131644 to 132244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,129 DEBUG Processing 176/706 atomic regions from SNP 52675 to 53276 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,180 DEBUG Processing 595/669 atomic regions from SNP 178352 to 178952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,342 DEBUG Processing 440/724 atomic regions from SNP 131944 to 132544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,354 DEBUG Processing 177/706 atomic regions from SNP 52976 to 53577 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,414 DEBUG Processing 596/669 atomic regions from SNP 178652 to 179252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,565 DEBUG Processing 441/724 atomic regions from SNP 132244 to 132844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,579 DEBUG Processing 178/706 atomic regions from SNP 53277 to 53878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,651 DEBUG Processing 597/669 atomic regions from SNP 178952 to 179552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,789 DEBUG Processing 442/724 atomic regions from SNP 132544 to 133144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,807 DEBUG Processing 179/706 atomic regions from SNP 53578 to 54179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,877 DEBUG Processing 598/669 atomic regions from SNP 179252 to 179852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,006 DEBUG Processing 443/724 atomic regions from SNP 132844 to 133444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,030 DEBUG Processing 180/706 atomic regions from SNP 53879 to 54480 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,113 DEBUG Processing 599/669 atomic regions from SNP 179552 to 180152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,226 DEBUG Processing 444/724 atomic regions from SNP 133144 to 133744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,255 DEBUG Processing 181/706 atomic regions from SNP 54180 to 54781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,347 DEBUG Processing 600/669 atomic regions from SNP 179852 to 180452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,444 DEBUG Processing 445/724 atomic regions from SNP 133444 to 134044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,476 DEBUG Processing 182/706 atomic regions from SNP 54481 to 55082 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,578 DEBUG Processing 601/669 atomic regions from SNP 180152 to 180752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,664 DEBUG Processing 446/724 atomic regions from SNP 133744 to 134344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,693 DEBUG Processing 183/706 atomic regions from SNP 54782 to 55383 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,817 DEBUG Processing 602/669 atomic regions from SNP 180452 to 181052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,882 DEBUG Processing 447/724 atomic regions from SNP 134044 to 134644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,907 DEBUG Processing 184/706 atomic regions from SNP 55083 to 55684 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,052 DEBUG Processing 603/669 atomic regions from SNP 180752 to 181352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,104 DEBUG Processing 448/724 atomic regions from SNP 134344 to 134944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,120 DEBUG Processing 185/706 atomic regions from SNP 55384 to 55985 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,288 DEBUG Processing 604/669 atomic regions from SNP 181052 to 181652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,323 DEBUG Processing 449/724 atomic regions from SNP 134644 to 135244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,336 DEBUG Processing 186/706 atomic regions from SNP 55685 to 56286 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,521 DEBUG Processing 605/669 atomic regions from SNP 181352 to 181952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,554 DEBUG Processing 450/724 atomic regions from SNP 134944 to 135544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,559 DEBUG Processing 187/706 atomic regions from SNP 55986 to 56587 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,759 DEBUG Processing 606/669 atomic regions from SNP 181652 to 182252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,785 DEBUG Processing 188/706 atomic regions from SNP 56287 to 56888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,789 DEBUG Processing 451/724 atomic regions from SNP 135244 to 135844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,006 DEBUG Processing 607/669 atomic regions from SNP 181952 to 182552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,009 DEBUG Processing 189/706 atomic regions from SNP 56588 to 57189 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,046 DEBUG Processing 452/724 atomic regions from SNP 135544 to 136144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,241 DEBUG Processing 190/706 atomic regions from SNP 56889 to 57490 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,251 DEBUG Processing 608/669 atomic regions from SNP 182252 to 182852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,292 DEBUG Processing 453/724 atomic regions from SNP 135844 to 136444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,463 DEBUG Processing 191/706 atomic regions from SNP 57190 to 57791 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,485 DEBUG Processing 609/669 atomic regions from SNP 182552 to 183152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,540 DEBUG Processing 454/724 atomic regions from SNP 136144 to 136744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,689 DEBUG Processing 192/706 atomic regions from SNP 57491 to 58092 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,727 DEBUG Processing 610/669 atomic regions from SNP 182852 to 183452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,764 DEBUG Processing 455/724 atomic regions from SNP 136444 to 137044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,921 DEBUG Processing 193/706 atomic regions from SNP 57792 to 58393 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,967 DEBUG Processing 611/669 atomic regions from SNP 183152 to 183752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,990 DEBUG Processing 456/724 atomic regions from SNP 136744 to 137344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,154 DEBUG Processing 194/706 atomic regions from SNP 58093 to 58694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,207 DEBUG Processing 612/669 atomic regions from SNP 183452 to 184052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,220 DEBUG Processing 457/724 atomic regions from SNP 137044 to 137644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,387 DEBUG Processing 195/706 atomic regions from SNP 58394 to 58995 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,445 DEBUG Processing 613/669 atomic regions from SNP 183752 to 184352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,448 DEBUG Processing 458/724 atomic regions from SNP 137344 to 137944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,621 DEBUG Processing 196/706 atomic regions from SNP 58695 to 59296 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,677 DEBUG Processing 459/724 atomic regions from SNP 137644 to 138244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,683 DEBUG Processing 614/669 atomic regions from SNP 184052 to 184652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,846 DEBUG Processing 197/706 atomic regions from SNP 58996 to 59597 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,917 DEBUG Processing 460/724 atomic regions from SNP 137944 to 138544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,934 DEBUG Processing 615/669 atomic regions from SNP 184352 to 184952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,069 DEBUG Processing 198/706 atomic regions from SNP 59297 to 59898 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,141 DEBUG Processing 461/724 atomic regions from SNP 138244 to 138844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,168 DEBUG Processing 616/669 atomic regions from SNP 184652 to 185252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,290 DEBUG Processing 199/706 atomic regions from SNP 59598 to 60199 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,307 DEBUG Segmenting atomic regions: 2025-01-31 09:54:22,368 DEBUG Processing 462/724 atomic regions from SNP 138544 to 139144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,400 DEBUG Processing 1/677 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,401 DEBUG Processing 617/669 atomic regions from SNP 184952 to 185552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,516 DEBUG Processing 200/706 atomic regions from SNP 59899 to 60500 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,600 DEBUG Processing 463/724 atomic regions from SNP 138844 to 139444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,630 DEBUG Processing 2/677 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,647 DEBUG Processing 618/669 atomic regions from SNP 185252 to 185852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,754 DEBUG Processing 201/706 atomic regions from SNP 60200 to 60801 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,832 DEBUG Processing 464/724 atomic regions from SNP 139144 to 139744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,856 DEBUG Processing 3/677 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,888 DEBUG Processing 619/669 atomic regions from SNP 185552 to 186152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,989 DEBUG Processing 202/706 atomic regions from SNP 60501 to 61102 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,062 DEBUG Processing 465/724 atomic regions from SNP 139444 to 140044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,087 DEBUG Processing 4/677 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,123 DEBUG Processing 620/669 atomic regions from SNP 185852 to 186452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,228 DEBUG Processing 203/706 atomic regions from SNP 60802 to 61403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,292 DEBUG Processing 466/724 atomic regions from SNP 139744 to 140344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,316 DEBUG Processing 5/677 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,352 DEBUG Processing 621/669 atomic regions from SNP 186152 to 186752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,462 DEBUG Processing 204/706 atomic regions from SNP 61103 to 61704 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,523 DEBUG Processing 467/724 atomic regions from SNP 140044 to 140644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,546 DEBUG Processing 6/677 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,584 DEBUG Processing 622/669 atomic regions from SNP 186452 to 187052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,695 DEBUG Processing 205/706 atomic regions from SNP 61404 to 62005 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,752 DEBUG Processing 468/724 atomic regions from SNP 140344 to 140944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,789 DEBUG Processing 7/677 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,828 DEBUG Processing 623/669 atomic regions from SNP 186752 to 187352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,923 DEBUG Processing 206/706 atomic regions from SNP 61705 to 62306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,982 DEBUG Processing 469/724 atomic regions from SNP 140644 to 141244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,020 DEBUG Processing 8/677 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,061 DEBUG Processing 624/669 atomic regions from SNP 187052 to 187652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,152 DEBUG Processing 207/706 atomic regions from SNP 62006 to 62606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,212 DEBUG Processing 470/724 atomic regions from SNP 140944 to 141544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,247 DEBUG Processing 9/677 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,294 DEBUG Processing 625/669 atomic regions from SNP 187352 to 187952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,380 DEBUG Processing 208/706 atomic regions from SNP 62306 to 62906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,443 DEBUG Processing 471/724 atomic regions from SNP 141244 to 141844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,475 DEBUG Processing 10/677 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,532 DEBUG Processing 626/669 atomic regions from SNP 187652 to 188252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,611 DEBUG Processing 209/706 atomic regions from SNP 62606 to 63206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,672 DEBUG Processing 472/724 atomic regions from SNP 141544 to 142144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,699 DEBUG Processing 11/677 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,768 DEBUG Processing 627/669 atomic regions from SNP 187952 to 188552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,844 DEBUG Processing 210/706 atomic regions from SNP 62906 to 63506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,907 DEBUG Processing 473/724 atomic regions from SNP 141844 to 142444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,931 DEBUG Processing 12/677 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,008 DEBUG Processing 628/669 atomic regions from SNP 188252 to 188852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,088 DEBUG Processing 211/706 atomic regions from SNP 63206 to 63806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,144 DEBUG Processing 474/724 atomic regions from SNP 142144 to 142744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,167 DEBUG Processing 13/677 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,255 DEBUG Processing 629/669 atomic regions from SNP 188552 to 189152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,338 DEBUG Processing 212/706 atomic regions from SNP 63506 to 64106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,394 DEBUG Processing 475/724 atomic regions from SNP 142444 to 143044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,418 DEBUG Processing 14/677 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,491 DEBUG Processing 630/669 atomic regions from SNP 188852 to 189452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,572 DEBUG Processing 213/706 atomic regions from SNP 63806 to 64406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,633 DEBUG Processing 476/724 atomic regions from SNP 142744 to 143344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,653 DEBUG Processing 15/677 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,722 DEBUG Processing 631/669 atomic regions from SNP 189152 to 189752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,804 DEBUG Processing 214/706 atomic regions from SNP 64106 to 64706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,875 DEBUG Processing 477/724 atomic regions from SNP 143044 to 143644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,890 DEBUG Processing 16/677 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,961 DEBUG Processing 632/669 atomic regions from SNP 189452 to 190052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,034 DEBUG Processing 215/706 atomic regions from SNP 64406 to 65006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,125 DEBUG Processing 478/724 atomic regions from SNP 143344 to 143944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,134 DEBUG Processing 17/677 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,198 DEBUG Processing 633/669 atomic regions from SNP 189752 to 190352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,262 DEBUG Processing 216/706 atomic regions from SNP 64706 to 65306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,356 DEBUG Processing 479/724 atomic regions from SNP 143644 to 144244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,357 DEBUG Processing 18/677 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,433 DEBUG Processing 634/669 atomic regions from SNP 190052 to 190652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,484 DEBUG Processing 217/706 atomic regions from SNP 65006 to 65606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,581 DEBUG Processing 19/677 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,586 DEBUG Processing 480/724 atomic regions from SNP 143944 to 144544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,671 DEBUG Processing 635/669 atomic regions from SNP 190352 to 190952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,709 DEBUG Processing 218/706 atomic regions from SNP 65306 to 65906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,805 DEBUG Processing 20/677 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,815 DEBUG Processing 481/724 atomic regions from SNP 144244 to 144844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,914 DEBUG Processing 636/669 atomic regions from SNP 190652 to 191252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,948 DEBUG Processing 219/706 atomic regions from SNP 65606 to 66206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,029 DEBUG Processing 21/677 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,046 DEBUG Processing 482/724 atomic regions from SNP 144544 to 145144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,163 DEBUG Processing 637/669 atomic regions from SNP 190952 to 191552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,191 DEBUG Processing 220/706 atomic regions from SNP 65906 to 66506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,259 DEBUG Processing 22/677 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,278 DEBUG Processing 483/724 atomic regions from SNP 144844 to 145444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,405 DEBUG Processing 638/669 atomic regions from SNP 191252 to 191852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,430 DEBUG Processing 221/706 atomic regions from SNP 66206 to 66806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,490 DEBUG Processing 23/677 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,513 DEBUG Processing 484/724 atomic regions from SNP 145144 to 145744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,642 DEBUG Processing 639/669 atomic regions from SNP 191552 to 192152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,668 DEBUG Processing 222/706 atomic regions from SNP 66506 to 67106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,726 DEBUG Processing 24/677 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,754 DEBUG Processing 485/724 atomic regions from SNP 145444 to 146044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,881 DEBUG Processing 640/669 atomic regions from SNP 191852 to 192452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,910 DEBUG Processing 223/706 atomic regions from SNP 66806 to 67406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,964 DEBUG Processing 25/677 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,011 DEBUG Processing 486/724 atomic regions from SNP 145744 to 146344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,116 DEBUG Processing 641/669 atomic regions from SNP 192152 to 192752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,146 DEBUG Processing 224/706 atomic regions from SNP 67106 to 67706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,196 DEBUG Processing 26/677 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,254 DEBUG Processing 487/724 atomic regions from SNP 146044 to 146644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,353 DEBUG Processing 642/669 atomic regions from SNP 192452 to 193052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,382 DEBUG Processing 225/706 atomic regions from SNP 67406 to 68006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,420 DEBUG Processing 27/677 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,491 DEBUG Processing 488/724 atomic regions from SNP 146344 to 146944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,590 DEBUG Processing 643/669 atomic regions from SNP 192752 to 193352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,617 DEBUG Processing 226/706 atomic regions from SNP 67706 to 68306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,646 DEBUG Processing 28/677 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,729 DEBUG Processing 489/724 atomic regions from SNP 146644 to 147244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,830 DEBUG Processing 644/669 atomic regions from SNP 193052 to 193652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,851 DEBUG Processing 227/706 atomic regions from SNP 68006 to 68606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,870 DEBUG Processing 29/677 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,968 DEBUG Processing 490/724 atomic regions from SNP 146944 to 147544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,075 DEBUG Processing 645/669 atomic regions from SNP 193352 to 193952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,085 DEBUG Processing 228/706 atomic regions from SNP 68306 to 68906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,099 DEBUG Processing 30/677 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,202 DEBUG Processing 491/724 atomic regions from SNP 147244 to 147844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,315 DEBUG Processing 646/669 atomic regions from SNP 193652 to 194252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,316 DEBUG Processing 229/706 atomic regions from SNP 68606 to 69206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,326 DEBUG Processing 31/677 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,434 DEBUG Processing 492/724 atomic regions from SNP 147544 to 148144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,547 DEBUG Processing 230/706 atomic regions from SNP 68906 to 69506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,550 DEBUG Processing 647/669 atomic regions from SNP 193952 to 194552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,555 DEBUG Processing 32/677 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,664 DEBUG Processing 493/724 atomic regions from SNP 147844 to 148444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,776 DEBUG Processing 231/706 atomic regions from SNP 69206 to 69806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,784 DEBUG Processing 648/669 atomic regions from SNP 194252 to 194852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,786 DEBUG Processing 33/677 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,894 DEBUG Processing 494/724 atomic regions from SNP 148144 to 148744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,022 DEBUG Processing 232/706 atomic regions from SNP 69506 to 70106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,027 DEBUG Processing 649/669 atomic regions from SNP 194552 to 195152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,044 DEBUG Processing 34/677 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,123 DEBUG Processing 495/724 atomic regions from SNP 148444 to 149044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,260 DEBUG Processing 233/706 atomic regions from SNP 69806 to 70406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,272 DEBUG Processing 650/669 atomic regions from SNP 194852 to 195452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,300 DEBUG Processing 35/677 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,354 DEBUG Processing 496/724 atomic regions from SNP 148744 to 149344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,497 DEBUG Processing 234/706 atomic regions from SNP 70106 to 70706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,534 DEBUG Processing 36/677 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,540 DEBUG Processing 651/669 atomic regions from SNP 195152 to 195752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,581 DEBUG Processing 497/724 atomic regions from SNP 149044 to 149644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,735 DEBUG Processing 235/706 atomic regions from SNP 70406 to 71006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,763 DEBUG Processing 37/677 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,804 DEBUG Processing 652/669 atomic regions from SNP 195452 to 196052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,808 DEBUG Processing 498/724 atomic regions from SNP 149344 to 149944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,973 DEBUG Processing 236/706 atomic regions from SNP 70706 to 71306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,999 DEBUG Processing 38/677 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,039 DEBUG Processing 499/724 atomic regions from SNP 149644 to 150244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,040 DEBUG Processing 653/669 atomic regions from SNP 195752 to 196352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,212 DEBUG Processing 237/706 atomic regions from SNP 71006 to 71606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,239 DEBUG Processing 39/677 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,271 DEBUG Processing 500/724 atomic regions from SNP 149944 to 150544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,303 DEBUG Processing 654/669 atomic regions from SNP 196052 to 196652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,446 DEBUG Processing 238/706 atomic regions from SNP 71306 to 71906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,471 DEBUG Processing 40/677 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,507 DEBUG Processing 501/724 atomic regions from SNP 150244 to 150844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,562 DEBUG Processing 655/669 atomic regions from SNP 196352 to 196952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,685 DEBUG Processing 239/706 atomic regions from SNP 71606 to 72206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,700 DEBUG Processing 41/677 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,748 DEBUG Processing 502/724 atomic regions from SNP 150544 to 151144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,836 DEBUG Processing 656/669 atomic regions from SNP 196652 to 197252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,914 DEBUG Processing 240/706 atomic regions from SNP 71906 to 72506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,929 DEBUG Processing 42/677 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,990 DEBUG Processing 503/724 atomic regions from SNP 150844 to 151444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,077 DEBUG Processing 657/669 atomic regions from SNP 196952 to 197552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,146 DEBUG Processing 241/706 atomic regions from SNP 72206 to 72806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,147 DEBUG Processing 43/677 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,225 DEBUG Processing 504/724 atomic regions from SNP 151144 to 151744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,316 DEBUG Processing 658/669 atomic regions from SNP 197252 to 197852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,367 DEBUG Processing 44/677 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,378 DEBUG Processing 242/706 atomic regions from SNP 72506 to 73106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,458 DEBUG Processing 505/724 atomic regions from SNP 151444 to 152044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,554 DEBUG Processing 659/669 atomic regions from SNP 197552 to 198152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,592 DEBUG Processing 45/677 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,610 DEBUG Processing 243/706 atomic regions from SNP 72806 to 73406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,690 DEBUG Processing 506/724 atomic regions from SNP 151744 to 152344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,792 DEBUG Processing 660/669 atomic regions from SNP 197852 to 198452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,820 DEBUG Processing 46/677 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,837 DEBUG Processing 244/706 atomic regions from SNP 73106 to 73706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,919 DEBUG Processing 507/724 atomic regions from SNP 152044 to 152644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,032 DEBUG Processing 661/669 atomic regions from SNP 198152 to 198752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,054 DEBUG Processing 47/677 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,069 DEBUG Processing 245/706 atomic regions from SNP 73406 to 74006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,146 DEBUG Processing 508/724 atomic regions from SNP 152344 to 152944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,271 DEBUG Processing 662/669 atomic regions from SNP 198452 to 199052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,287 DEBUG Processing 48/677 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,303 DEBUG Processing 246/706 atomic regions from SNP 73706 to 74306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,376 DEBUG Processing 509/724 atomic regions from SNP 152644 to 153244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,509 DEBUG Processing 663/669 atomic regions from SNP 198752 to 199352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,520 DEBUG Processing 49/677 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,543 DEBUG Processing 247/706 atomic regions from SNP 74006 to 74606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,606 DEBUG Processing 510/724 atomic regions from SNP 152944 to 153544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,749 DEBUG Processing 664/669 atomic regions from SNP 199052 to 199652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,756 DEBUG Processing 50/677 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,775 DEBUG Processing 248/706 atomic regions from SNP 74306 to 74906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,840 DEBUG Processing 511/724 atomic regions from SNP 153244 to 153844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,989 DEBUG Processing 51/677 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,993 DEBUG Processing 665/669 atomic regions from SNP 199352 to 199952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,012 DEBUG Processing 249/706 atomic regions from SNP 74606 to 75206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,079 DEBUG Processing 512/724 atomic regions from SNP 153544 to 154144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,218 DEBUG Processing 52/677 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,236 DEBUG Processing 666/669 atomic regions from SNP 199652 to 200252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,247 DEBUG Processing 250/706 atomic regions from SNP 74906 to 75506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,318 DEBUG Processing 513/724 atomic regions from SNP 153844 to 154444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,453 DEBUG Processing 53/677 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,494 DEBUG Processing 251/706 atomic regions from SNP 75206 to 75806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,499 DEBUG Processing 667/669 atomic regions from SNP 199952 to 200552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,560 DEBUG Processing 514/724 atomic regions from SNP 154144 to 154744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,681 DEBUG Processing 54/677 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,731 DEBUG Processing 252/706 atomic regions from SNP 75506 to 76106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,745 DEBUG Processing 668/669 atomic regions from SNP 200252 to 200852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,796 DEBUG Processing 515/724 atomic regions from SNP 154444 to 155044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,899 DEBUG Processing 55/677 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,964 DEBUG Processing 253/706 atomic regions from SNP 75806 to 76406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,982 DEBUG Processing 669/669 atomic regions from SNP 200552 to 201152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,032 DEBUG Processing 516/724 atomic regions from SNP 154744 to 155344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,106 DEBUG Processing 56/677 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,141 DEBUG Unique SNPs positions in subchromosome 2: 201153 2025-01-31 09:54:35,199 DEBUG Processing 254/706 atomic regions from SNP 76106 to 76706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,276 DEBUG Processing 517/724 atomic regions from SNP 155044 to 155644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,333 DEBUG Processing 57/677 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,435 DEBUG Processing 255/706 atomic regions from SNP 76406 to 77006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,528 DEBUG Processing 518/724 atomic regions from SNP 155344 to 155944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,563 DEBUG Processing 58/677 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,665 DEBUG Processing 256/706 atomic regions from SNP 76706 to 77306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,780 DEBUG Processing 519/724 atomic regions from SNP 155644 to 156244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,810 DEBUG Processing 59/677 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,901 DEBUG Processing 257/706 atomic regions from SNP 77006 to 77606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,023 DEBUG Processing 520/724 atomic regions from SNP 155944 to 156544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,053 DEBUG Processing 60/677 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,132 DEBUG Processing 258/706 atomic regions from SNP 77306 to 77906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,265 DEBUG Processing 521/724 atomic regions from SNP 156244 to 156844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,309 DEBUG Processing 61/677 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,359 DEBUG Processing 259/706 atomic regions from SNP 77606 to 78206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,502 DEBUG Processing 522/724 atomic regions from SNP 156544 to 157144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,566 DEBUG Processing 62/677 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,590 DEBUG Processing 260/706 atomic regions from SNP 77906 to 78506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,738 DEBUG Processing 523/724 atomic regions from SNP 156844 to 157444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,793 DEBUG Processing 63/677 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,818 DEBUG Processing 261/706 atomic regions from SNP 78206 to 78806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,975 DEBUG Processing 524/724 atomic regions from SNP 157144 to 157744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,025 DEBUG Processing 64/677 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,047 DEBUG Processing 262/706 atomic regions from SNP 78506 to 79106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,218 DEBUG Processing 525/724 atomic regions from SNP 157444 to 158044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,254 DEBUG Processing 65/677 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,298 DEBUG Processing 263/706 atomic regions from SNP 78806 to 79406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,457 DEBUG Processing 526/724 atomic regions from SNP 157744 to 158344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,484 DEBUG Processing 66/677 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,563 DEBUG Processing 264/706 atomic regions from SNP 79106 to 79706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,688 DEBUG Processing 527/724 atomic regions from SNP 158044 to 158644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,709 DEBUG Processing 67/677 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,794 DEBUG Processing 265/706 atomic regions from SNP 79406 to 80006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,926 DEBUG Processing 528/724 atomic regions from SNP 158344 to 158944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,940 DEBUG Processing 68/677 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,027 DEBUG Processing 266/706 atomic regions from SNP 79706 to 80306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,164 DEBUG Processing 529/724 atomic regions from SNP 158644 to 159244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,170 DEBUG Processing 69/677 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,259 DEBUG Processing 267/706 atomic regions from SNP 80006 to 80606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,393 DEBUG Processing 70/677 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,394 DEBUG Processing 530/724 atomic regions from SNP 158944 to 159544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,501 DEBUG Processing 268/706 atomic regions from SNP 80306 to 80906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,615 DEBUG Processing 71/677 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,626 DEBUG Processing 531/724 atomic regions from SNP 159244 to 159844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,745 DEBUG Processing 269/706 atomic regions from SNP 80606 to 81206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,838 DEBUG Processing 72/677 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,858 DEBUG Processing 532/724 atomic regions from SNP 159544 to 160144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,984 DEBUG Processing 270/706 atomic regions from SNP 80906 to 81506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,064 DEBUG Processing 73/677 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,090 DEBUG Processing 533/724 atomic regions from SNP 159844 to 160444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,243 DEBUG Processing 271/706 atomic regions from SNP 81206 to 81806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,294 DEBUG Processing 74/677 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,325 DEBUG Processing 534/724 atomic regions from SNP 160144 to 160744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,502 DEBUG Processing 272/706 atomic regions from SNP 81506 to 82106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,525 DEBUG Processing 75/677 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,560 DEBUG Processing 535/724 atomic regions from SNP 160444 to 161044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,747 DEBUG Processing 273/706 atomic regions from SNP 81806 to 82406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,753 DEBUG Processing 76/677 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,794 DEBUG Processing 536/724 atomic regions from SNP 160744 to 161344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,983 DEBUG Processing 77/677 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,984 DEBUG Processing 274/706 atomic regions from SNP 82106 to 82706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,030 DEBUG Processing 537/724 atomic regions from SNP 161044 to 161644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,209 DEBUG Processing 78/677 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,219 DEBUG Processing 275/706 atomic regions from SNP 82406 to 83006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,265 DEBUG Processing 538/724 atomic regions from SNP 161344 to 161944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,435 DEBUG Processing 79/677 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,458 DEBUG Processing 276/706 atomic regions from SNP 82706 to 83306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,504 DEBUG Processing 539/724 atomic regions from SNP 161644 to 162244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,671 DEBUG Processing 80/677 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,699 DEBUG Processing 277/706 atomic regions from SNP 83006 to 83606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,759 DEBUG Processing 540/724 atomic regions from SNP 161944 to 162544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,895 DEBUG Processing 81/677 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,926 DEBUG Processing 278/706 atomic regions from SNP 83306 to 83906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,016 DEBUG Processing 541/724 atomic regions from SNP 162244 to 162844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,114 DEBUG Processing 82/677 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,162 DEBUG Processing 279/706 atomic regions from SNP 83606 to 84206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,260 DEBUG Processing 542/724 atomic regions from SNP 162544 to 163144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,340 DEBUG Processing 83/677 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,420 DEBUG Processing 280/706 atomic regions from SNP 83906 to 84506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,502 DEBUG Processing 543/724 atomic regions from SNP 162844 to 163444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,573 DEBUG Processing 84/677 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,669 DEBUG Processing 281/706 atomic regions from SNP 84206 to 84806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,762 DEBUG Processing 544/724 atomic regions from SNP 163144 to 163744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,804 DEBUG Processing 85/677 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,905 DEBUG Processing 282/706 atomic regions from SNP 84506 to 85106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,008 DEBUG Processing 545/724 atomic regions from SNP 163444 to 164044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,045 DEBUG Processing 86/677 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,141 DEBUG Processing 283/706 atomic regions from SNP 84806 to 85406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,252 DEBUG Processing 546/724 atomic regions from SNP 163744 to 164344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,285 DEBUG Processing 87/677 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,400 DEBUG Processing 284/706 atomic regions from SNP 85106 to 85706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,493 DEBUG Processing 547/724 atomic regions from SNP 164044 to 164644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,502 DEBUG Subchromosome time: 189.57003855495714, subchromosome SNPs: 201153 2025-01-31 09:54:42,503 DEBUG Estimated BADs: [0.19, 1.35, 13.49, 1.35, 5.39, 1.35, 4.05, 2.70, 0.45, 1.35, 0.67, 6.74, 1.35, 9.44, 1.35, 6.74, 2.70, 1.35, 2.70, 0.34, 1.35, 0.45, 1.35, 0.45, 1.35, 4.05, 1.35] SNP counts: [168, 19002, 88, 2100, 4099, 14150, 4015, 9578, 5702, 11115, 2315, 696, 1235, 848, 2176, 2332, 28460, 5139, 10481, 10207, 2727, 19743, 13843, 15320, 9673, 1412, 4697] SNP IDs counts: [168, 19002, 88, 2100, 4099, 14150, 4015, 9578, 5702, 11115, 2315, 696, 1235, 848, 2176, 2332, 28460, 5139, 10481, 10207, 2727, 19743, 13843, 15320, 9673, 1412, 4697] Critical gap: 619784bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.13Mbp[0.71Mbp], 18.23Mbp, 18.29Mbp, 19.70Mbp, 21.85Mbp, 29.89Mbp, 32.00Mbp, 37.23Mbp, 40.55Mbp, 49.35Mbp, 50.78Mbp, 51.16Mbp, 51.98Mbp, 52.44Mbp, 54.36Mbp, 55.60Mbp, 71.42Mbp, 74.31Mbp, 79.96Mbp, 86.06Mbp, 87.57Mbp, 99.04Mbp, 106.86Mbp, 115.90Mbp, 121.27Mbp, 122.00Mbp, 124.90Mbp] 2025-01-31 09:54:42,503 DEBUG chr14 time: 189.57070697296876 s 2025-01-31 09:54:42,524 DEBUG Processing 88/677 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,646 DEBUG chr14: Fitting background model for 27 segments 2025-01-31 09:54:42,648 DEBUG Processing 285/706 atomic regions from SNP 85406 to 86006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,734 DEBUG Processing 548/724 atomic regions from SNP 164344 to 164944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,766 DEBUG Processing 89/677 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,897 DEBUG Processing 286/706 atomic regions from SNP 85706 to 86306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,971 DEBUG Processing 549/724 atomic regions from SNP 164644 to 165244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,000 DEBUG Processing 90/677 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,128 DEBUG Processing 287/706 atomic regions from SNP 86006 to 86606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,233 DEBUG Processing 91/677 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,238 DEBUG Processing 550/724 atomic regions from SNP 164944 to 165544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,360 DEBUG Processing 288/706 atomic regions from SNP 86306 to 86906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,465 DEBUG Processing 92/677 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,477 DEBUG Processing 551/724 atomic regions from SNP 165244 to 165844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,593 DEBUG Processing 289/706 atomic regions from SNP 86606 to 87206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,695 DEBUG Processing 93/677 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,718 DEBUG Processing 552/724 atomic regions from SNP 165544 to 166144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,824 DEBUG Processing 290/706 atomic regions from SNP 86906 to 87506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,921 DEBUG Processing 94/677 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,953 DEBUG Processing 553/724 atomic regions from SNP 165844 to 166444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,067 DEBUG Processing 291/706 atomic regions from SNP 87206 to 87806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,153 DEBUG Processing 95/677 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,215 DEBUG Processing 554/724 atomic regions from SNP 166144 to 166744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,316 DEBUG Processing 292/706 atomic regions from SNP 87506 to 88106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,385 DEBUG Processing 96/677 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,468 DEBUG Processing 555/724 atomic regions from SNP 166444 to 167044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,563 DEBUG Processing 293/706 atomic regions from SNP 87806 to 88406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,642 DEBUG Processing 97/677 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,712 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:54:44,713 DEBUG Processing 556/724 atomic regions from SNP 166744 to 167344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,793 DEBUG Processing 294/706 atomic regions from SNP 88106 to 88706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,870 DEBUG Processing 98/677 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,974 DEBUG Processing 557/724 atomic regions from SNP 167044 to 167644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,028 DEBUG Processing 295/706 atomic regions from SNP 88406 to 89006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,101 DEBUG Processing 99/677 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,229 DEBUG Processing 558/724 atomic regions from SNP 167344 to 167944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,261 DEBUG Processing 296/706 atomic regions from SNP 88706 to 89306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,334 DEBUG Processing 100/677 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,463 DEBUG Processing 559/724 atomic regions from SNP 167644 to 168244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,491 DEBUG Processing 297/706 atomic regions from SNP 89006 to 89606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,561 DEBUG Processing 101/677 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,697 DEBUG Processing 560/724 atomic regions from SNP 167944 to 168544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,724 DEBUG Processing 298/706 atomic regions from SNP 89306 to 89906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,785 DEBUG Processing 102/677 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,928 DEBUG Processing 561/724 atomic regions from SNP 168244 to 168844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,961 DEBUG Processing 299/706 atomic regions from SNP 89606 to 90206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,036 DEBUG Processing 103/677 atomic regions from SNP 30702 to 31303 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,159 DEBUG Processing 562/724 atomic regions from SNP 168544 to 169144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,207 DEBUG Processing 300/706 atomic regions from SNP 89906 to 90506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,296 DEBUG Processing 104/677 atomic regions from SNP 31003 to 31604 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,391 DEBUG Processing 563/724 atomic regions from SNP 168844 to 169444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,436 DEBUG Processing 301/706 atomic regions from SNP 90206 to 90806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,548 DEBUG Processing 105/677 atomic regions from SNP 31304 to 31905 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,620 DEBUG Processing 564/724 atomic regions from SNP 169144 to 169744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,666 DEBUG Processing 302/706 atomic regions from SNP 90506 to 91106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,792 DEBUG Processing 106/677 atomic regions from SNP 31605 to 32206 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,850 DEBUG Processing 565/724 atomic regions from SNP 169444 to 170044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,912 DEBUG Processing 303/706 atomic regions from SNP 90806 to 91406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,052 DEBUG Processing 107/677 atomic regions from SNP 31906 to 32507 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,080 DEBUG Processing 566/724 atomic regions from SNP 169744 to 170344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,145 DEBUG Processing 304/706 atomic regions from SNP 91106 to 91706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,308 DEBUG Processing 108/677 atomic regions from SNP 32207 to 32808 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,312 DEBUG Processing 567/724 atomic regions from SNP 170044 to 170644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,366 DEBUG Processing 305/706 atomic regions from SNP 91406 to 92006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,553 DEBUG Processing 568/724 atomic regions from SNP 170344 to 170944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,556 DEBUG Processing 109/677 atomic regions from SNP 32508 to 33109 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,590 DEBUG Processing 306/706 atomic regions from SNP 91706 to 92306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,794 DEBUG Processing 110/677 atomic regions from SNP 32809 to 33410 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,799 DEBUG Processing 569/724 atomic regions from SNP 170644 to 171244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,824 DEBUG Processing 307/706 atomic regions from SNP 92006 to 92606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,025 DEBUG Processing 111/677 atomic regions from SNP 33110 to 33711 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,037 DEBUG Processing 570/724 atomic regions from SNP 170944 to 171544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,058 DEBUG Processing 308/706 atomic regions from SNP 92306 to 92906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,261 DEBUG Processing 112/677 atomic regions from SNP 33411 to 34012 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,282 DEBUG Processing 571/724 atomic regions from SNP 171244 to 171844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,306 DEBUG Processing 309/706 atomic regions from SNP 92606 to 93206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,491 DEBUG Processing 113/677 atomic regions from SNP 33712 to 34313 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,533 DEBUG Processing 572/724 atomic regions from SNP 171544 to 172144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,541 DEBUG Processing 310/706 atomic regions from SNP 92906 to 93506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,738 DEBUG Processing 114/677 atomic regions from SNP 34013 to 34614 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,781 DEBUG Processing 311/706 atomic regions from SNP 93206 to 93806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,793 DEBUG Processing 573/724 atomic regions from SNP 171844 to 172444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,998 DEBUG Processing 115/677 atomic regions from SNP 34314 to 34915 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,028 DEBUG Processing 312/706 atomic regions from SNP 93506 to 94106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,044 DEBUG Processing 574/724 atomic regions from SNP 172144 to 172744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,258 DEBUG Processing 116/677 atomic regions from SNP 34615 to 35216 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,272 DEBUG Processing 313/706 atomic regions from SNP 93806 to 94406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,302 DEBUG Processing 575/724 atomic regions from SNP 172444 to 173044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,507 DEBUG Processing 314/706 atomic regions from SNP 94106 to 94706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,520 DEBUG Processing 117/677 atomic regions from SNP 34916 to 35517 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,542 DEBUG Processing 576/724 atomic regions from SNP 172744 to 173344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,743 DEBUG Processing 315/706 atomic regions from SNP 94406 to 95006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,763 DEBUG Processing 118/677 atomic regions from SNP 35217 to 35818 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,786 DEBUG Processing 577/724 atomic regions from SNP 173044 to 173644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,000 DEBUG Processing 119/677 atomic regions from SNP 35518 to 36119 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,006 DEBUG Processing 316/706 atomic regions from SNP 94706 to 95306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,033 DEBUG Processing 578/724 atomic regions from SNP 173344 to 173944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,253 DEBUG Processing 317/706 atomic regions from SNP 95006 to 95606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,254 DEBUG Processing 120/677 atomic regions from SNP 35819 to 36420 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,277 DEBUG Processing 579/724 atomic regions from SNP 173644 to 174244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,500 DEBUG Processing 318/706 atomic regions from SNP 95306 to 95906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,509 DEBUG Processing 121/677 atomic regions from SNP 36120 to 36721 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,530 DEBUG Processing 580/724 atomic regions from SNP 173944 to 174544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,751 DEBUG Processing 319/706 atomic regions from SNP 95606 to 96206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,779 DEBUG Processing 122/677 atomic regions from SNP 36421 to 37022 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,790 DEBUG Processing 581/724 atomic regions from SNP 174244 to 174844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,016 DEBUG Processing 320/706 atomic regions from SNP 95906 to 96506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,037 DEBUG Processing 582/724 atomic regions from SNP 174544 to 175144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,068 DEBUG Processing 123/677 atomic regions from SNP 36722 to 37323 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,259 DEBUG Processing 321/706 atomic regions from SNP 96206 to 96806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,274 DEBUG Processing 583/724 atomic regions from SNP 174844 to 175444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,327 DEBUG Processing 124/677 atomic regions from SNP 37023 to 37624 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,490 DEBUG Processing 322/706 atomic regions from SNP 96506 to 97106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,507 DEBUG Processing 584/724 atomic regions from SNP 175144 to 175744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,577 DEBUG Processing 125/677 atomic regions from SNP 37324 to 37925 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,733 DEBUG Processing 323/706 atomic regions from SNP 96806 to 97406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,752 DEBUG Processing 585/724 atomic regions from SNP 175444 to 176044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,812 DEBUG Processing 126/677 atomic regions from SNP 37625 to 38226 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,996 DEBUG Processing 586/724 atomic regions from SNP 175744 to 176344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,004 DEBUG Processing 324/706 atomic regions from SNP 97106 to 97706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,045 DEBUG Processing 127/677 atomic regions from SNP 37926 to 38527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,238 DEBUG Processing 587/724 atomic regions from SNP 176044 to 176644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,270 DEBUG Processing 325/706 atomic regions from SNP 97406 to 98006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,280 DEBUG Processing 128/677 atomic regions from SNP 38227 to 38828 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,479 DEBUG Processing 588/724 atomic regions from SNP 176344 to 176944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,512 DEBUG Processing 129/677 atomic regions from SNP 38528 to 39129 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,534 DEBUG Processing 326/706 atomic regions from SNP 97706 to 98306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,723 DEBUG Processing 589/724 atomic regions from SNP 176644 to 177244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,753 DEBUG Processing 130/677 atomic regions from SNP 38829 to 39430 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,778 DEBUG Processing 327/706 atomic regions from SNP 98006 to 98606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,969 DEBUG Processing 590/724 atomic regions from SNP 176944 to 177544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,993 DEBUG Processing 131/677 atomic regions from SNP 39130 to 39731 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,022 DEBUG Processing 328/706 atomic regions from SNP 98306 to 98906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,208 DEBUG Processing 591/724 atomic regions from SNP 177244 to 177844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,231 DEBUG Processing 132/677 atomic regions from SNP 39431 to 40032 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,277 DEBUG Processing 329/706 atomic regions from SNP 98606 to 99206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,468 DEBUG Processing 133/677 atomic regions from SNP 39732 to 40333 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,474 DEBUG Processing 592/724 atomic regions from SNP 177544 to 178144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,533 DEBUG Processing 330/706 atomic regions from SNP 98906 to 99506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,704 DEBUG Processing 134/677 atomic regions from SNP 40033 to 40634 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,716 DEBUG Processing 593/724 atomic regions from SNP 177844 to 178444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,799 DEBUG Processing 331/706 atomic regions from SNP 99206 to 99806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,939 DEBUG Processing 135/677 atomic regions from SNP 40334 to 40935 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,972 DEBUG Processing 594/724 atomic regions from SNP 178144 to 178744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,074 DEBUG Processing 332/706 atomic regions from SNP 99506 to 100106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,171 DEBUG Processing 136/677 atomic regions from SNP 40635 to 41236 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,225 DEBUG Processing 595/724 atomic regions from SNP 178444 to 179044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,323 DEBUG Processing 333/706 atomic regions from SNP 99806 to 100406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,405 DEBUG Processing 137/677 atomic regions from SNP 40936 to 41537 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,469 DEBUG Processing 596/724 atomic regions from SNP 178744 to 179344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,581 DEBUG Processing 334/706 atomic regions from SNP 100106 to 100706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,639 DEBUG Processing 138/677 atomic regions from SNP 41237 to 41838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,707 DEBUG Processing 597/724 atomic regions from SNP 179044 to 179644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,829 DEBUG Processing 335/706 atomic regions from SNP 100406 to 101006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,866 DEBUG Processing 139/677 atomic regions from SNP 41538 to 42139 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,959 DEBUG Processing 598/724 atomic regions from SNP 179344 to 179944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,076 DEBUG Processing 336/706 atomic regions from SNP 100706 to 101306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,096 DEBUG Processing 140/677 atomic regions from SNP 41839 to 42440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,197 DEBUG Processing 599/724 atomic regions from SNP 179644 to 180244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,317 DEBUG Processing 337/706 atomic regions from SNP 101006 to 101606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,342 DEBUG Processing 141/677 atomic regions from SNP 42140 to 42741 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,442 DEBUG Processing 600/724 atomic regions from SNP 179944 to 180544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,556 DEBUG Processing 338/706 atomic regions from SNP 101306 to 101906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,566 DEBUG Processing 142/677 atomic regions from SNP 42441 to 43042 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,669 DEBUG Processing 601/724 atomic regions from SNP 180244 to 180844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,791 DEBUG Processing 339/706 atomic regions from SNP 101606 to 102206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,792 DEBUG Processing 143/677 atomic regions from SNP 42742 to 43343 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,900 DEBUG Processing 602/724 atomic regions from SNP 180544 to 181144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,017 DEBUG Processing 340/706 atomic regions from SNP 101906 to 102506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,033 DEBUG Processing 144/677 atomic regions from SNP 43043 to 43644 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,127 DEBUG Processing 603/724 atomic regions from SNP 180844 to 181444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,246 DEBUG Processing 341/706 atomic regions from SNP 102206 to 102806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,258 DEBUG Processing 145/677 atomic regions from SNP 43344 to 43945 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,359 DEBUG Processing 604/724 atomic regions from SNP 181144 to 181744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,472 DEBUG Processing 342/706 atomic regions from SNP 102506 to 103106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,485 DEBUG Processing 146/677 atomic regions from SNP 43645 to 44246 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,589 DEBUG Processing 605/724 atomic regions from SNP 181444 to 182044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,690 DEBUG Processing 343/706 atomic regions from SNP 102806 to 103406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,710 DEBUG Processing 147/677 atomic regions from SNP 43946 to 44547 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,817 DEBUG Processing 606/724 atomic regions from SNP 181744 to 182344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,914 DEBUG Processing 344/706 atomic regions from SNP 103106 to 103706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,940 DEBUG Processing 148/677 atomic regions from SNP 44247 to 44848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,053 DEBUG Processing 607/724 atomic regions from SNP 182044 to 182644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,152 DEBUG Processing 345/706 atomic regions from SNP 103406 to 104006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,171 DEBUG Processing 149/677 atomic regions from SNP 44548 to 45149 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,282 DEBUG Processing 608/724 atomic regions from SNP 182344 to 182944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,401 DEBUG Processing 150/677 atomic regions from SNP 44849 to 45450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,403 DEBUG Processing 346/706 atomic regions from SNP 103706 to 104306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,512 DEBUG Processing 609/724 atomic regions from SNP 182644 to 183244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,632 DEBUG Processing 151/677 atomic regions from SNP 45150 to 45751 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,634 DEBUG Processing 347/706 atomic regions from SNP 104006 to 104606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,748 DEBUG Processing 610/724 atomic regions from SNP 182944 to 183544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,873 DEBUG Processing 152/677 atomic regions from SNP 45451 to 46052 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,886 DEBUG Processing 348/706 atomic regions from SNP 104306 to 104906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,987 DEBUG Processing 611/724 atomic regions from SNP 183244 to 183844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,105 DEBUG Processing 153/677 atomic regions from SNP 45752 to 46353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,111 DEBUG Processing 349/706 atomic regions from SNP 104606 to 105206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,220 DEBUG Processing 612/724 atomic regions from SNP 183544 to 184144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,331 DEBUG Processing 350/706 atomic regions from SNP 104906 to 105506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,357 DEBUG Processing 154/677 atomic regions from SNP 46053 to 46654 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,442 DEBUG Processing 613/724 atomic regions from SNP 183844 to 184444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,549 DEBUG Processing 351/706 atomic regions from SNP 105206 to 105806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,597 DEBUG Processing 155/677 atomic regions from SNP 46354 to 46955 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,673 DEBUG Processing 614/724 atomic regions from SNP 184144 to 184744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,725 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:54:58,727 DEBUG chr12: Signal quantile: 0.993. signal threshold: 13. Best RMSEA: 0.020 2025-01-31 09:54:58,772 DEBUG Processing 352/706 atomic regions from SNP 105506 to 106106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,846 DEBUG Processing 156/677 atomic regions from SNP 46655 to 47256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,903 DEBUG Processing 615/724 atomic regions from SNP 184444 to 185044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,001 DEBUG Processing 353/706 atomic regions from SNP 105806 to 106406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,098 DEBUG Processing 157/677 atomic regions from SNP 46956 to 47557 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,170 DEBUG Processing 616/724 atomic regions from SNP 184744 to 185344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,230 DEBUG Processing 354/706 atomic regions from SNP 106106 to 106706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,335 DEBUG Processing 158/677 atomic regions from SNP 47257 to 47858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,436 DEBUG Processing 617/724 atomic regions from SNP 185044 to 185644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,463 DEBUG Processing 355/706 atomic regions from SNP 106406 to 107006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,566 DEBUG Processing 159/677 atomic regions from SNP 47558 to 48159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,691 DEBUG Processing 618/724 atomic regions from SNP 185344 to 185944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,703 DEBUG Processing 356/706 atomic regions from SNP 106706 to 107306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,825 DEBUG Processing 160/677 atomic regions from SNP 47859 to 48460 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,925 DEBUG Processing 619/724 atomic regions from SNP 185644 to 186244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,942 DEBUG Processing 357/706 atomic regions from SNP 107006 to 107606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,082 DEBUG Processing 161/677 atomic regions from SNP 48160 to 48761 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,172 DEBUG Processing 358/706 atomic regions from SNP 107306 to 107906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,174 DEBUG Processing 620/724 atomic regions from SNP 185944 to 186544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,308 DEBUG Processing 162/677 atomic regions from SNP 48461 to 49062 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,404 DEBUG Processing 359/706 atomic regions from SNP 107606 to 108206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,409 DEBUG Processing 621/724 atomic regions from SNP 186244 to 186844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,531 DEBUG Processing 163/677 atomic regions from SNP 48762 to 49363 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,625 DEBUG Processing 360/706 atomic regions from SNP 107906 to 108506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,642 DEBUG Processing 622/724 atomic regions from SNP 186544 to 187144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,759 DEBUG Processing 164/677 atomic regions from SNP 49063 to 49664 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,860 DEBUG Processing 361/706 atomic regions from SNP 108206 to 108806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,900 DEBUG Processing 623/724 atomic regions from SNP 186844 to 187444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,991 DEBUG Processing 165/677 atomic regions from SNP 49364 to 49965 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,089 DEBUG Processing 362/706 atomic regions from SNP 108506 to 109106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,121 DEBUG chr12 total SNP count: 199794 2025-01-31 09:55:01,122 DEBUG chr12 length: 120129022 2025-01-31 09:55:01,122 DEBUG ----------------------------------------- 2025-01-31 09:55:01,122 INFO Processing SNPs in chr12 2025-01-31 09:55:01,165 DEBUG Processing 624/724 atomic regions from SNP 187144 to 187744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,217 DEBUG Processing 166/677 atomic regions from SNP 49665 to 50266 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,309 DEBUG Processing 363/706 atomic regions from SNP 108806 to 109406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,325 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 199794)] 2025-01-31 09:55:01,427 DEBUG Processing 625/724 atomic regions from SNP 187444 to 188044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,436 DEBUG Processing 167/677 atomic regions from SNP 49966 to 50567 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,466 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:01,526 DEBUG Processing 364/706 atomic regions from SNP 109106 to 109706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,656 DEBUG Processing 168/677 atomic regions from SNP 50267 to 50868 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,676 DEBUG Processing 626/724 atomic regions from SNP 187744 to 188344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,751 DEBUG Processing 365/706 atomic regions from SNP 109406 to 110006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,876 DEBUG Processing 169/677 atomic regions from SNP 50568 to 51169 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,942 DEBUG Processing 627/724 atomic regions from SNP 188044 to 188644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,978 DEBUG Processing 366/706 atomic regions from SNP 109706 to 110306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,095 DEBUG Processing 170/677 atomic regions from SNP 50869 to 51470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,202 DEBUG Processing 628/724 atomic regions from SNP 188344 to 188944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,207 DEBUG Processing 367/706 atomic regions from SNP 110006 to 110606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,316 DEBUG Processing 171/677 atomic regions from SNP 51170 to 51771 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,436 DEBUG Processing 368/706 atomic regions from SNP 110306 to 110906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,468 DEBUG Processing 629/724 atomic regions from SNP 188644 to 189244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,550 DEBUG Processing 172/677 atomic regions from SNP 51471 to 52072 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,665 DEBUG Processing 369/706 atomic regions from SNP 110606 to 111206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,740 DEBUG Processing 630/724 atomic regions from SNP 188944 to 189544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,788 DEBUG Processing 173/677 atomic regions from SNP 51772 to 52373 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,892 DEBUG Processing 370/706 atomic regions from SNP 110906 to 111506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,010 DEBUG Processing 631/724 atomic regions from SNP 189244 to 189844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,014 DEBUG Processing 174/677 atomic regions from SNP 52073 to 52674 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,112 DEBUG Processing 371/706 atomic regions from SNP 111206 to 111806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,240 DEBUG Processing 175/677 atomic regions from SNP 52374 to 52975 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,271 DEBUG Processing 632/724 atomic regions from SNP 189544 to 190144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,342 DEBUG Processing 372/706 atomic regions from SNP 111506 to 112106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,467 DEBUG Processing 176/677 atomic regions from SNP 52675 to 53276 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,540 DEBUG Processing 633/724 atomic regions from SNP 189844 to 190444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,562 DEBUG Processing 373/706 atomic regions from SNP 111806 to 112406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,705 DEBUG Processing 177/677 atomic regions from SNP 52976 to 53577 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,781 DEBUG Processing 374/706 atomic regions from SNP 112106 to 112706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,786 DEBUG Processing 634/724 atomic regions from SNP 190144 to 190744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,956 DEBUG Processing 178/677 atomic regions from SNP 53277 to 53878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,010 DEBUG Processing 375/706 atomic regions from SNP 112406 to 113006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,024 DEBUG Processing 635/724 atomic regions from SNP 190444 to 191044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,212 DEBUG Processing 179/677 atomic regions from SNP 53578 to 54179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,238 DEBUG Processing 376/706 atomic regions from SNP 112706 to 113306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,269 DEBUG Processing 636/724 atomic regions from SNP 190744 to 191344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,444 DEBUG Processing 180/677 atomic regions from SNP 53879 to 54480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,461 DEBUG Processing 377/706 atomic regions from SNP 113006 to 113606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,504 DEBUG Processing 637/724 atomic regions from SNP 191044 to 191644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,663 DEBUG Processing 181/677 atomic regions from SNP 54180 to 54781 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,681 DEBUG Processing 378/706 atomic regions from SNP 113306 to 113906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,755 DEBUG Processing 638/724 atomic regions from SNP 191344 to 191944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,886 DEBUG Processing 182/677 atomic regions from SNP 54481 to 55082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,900 DEBUG Processing 379/706 atomic regions from SNP 113606 to 114206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,013 DEBUG Processing 639/724 atomic regions from SNP 191644 to 192244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,117 DEBUG Processing 380/706 atomic regions from SNP 113906 to 114506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,117 DEBUG Processing 183/677 atomic regions from SNP 54782 to 55383 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,252 DEBUG Processing 640/724 atomic regions from SNP 191944 to 192544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,338 DEBUG Processing 381/706 atomic regions from SNP 114206 to 114806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,349 DEBUG Processing 184/677 atomic regions from SNP 55083 to 55684 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,498 DEBUG Processing 641/724 atomic regions from SNP 192244 to 192844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,575 DEBUG Processing 382/706 atomic regions from SNP 114506 to 115106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,584 DEBUG Processing 185/677 atomic regions from SNP 55384 to 55985 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,743 DEBUG Processing 642/724 atomic regions from SNP 192544 to 193144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,807 DEBUG Processing 383/706 atomic regions from SNP 114806 to 115406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,812 DEBUG Processing 186/677 atomic regions from SNP 55685 to 56286 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,008 DEBUG Processing 643/724 atomic regions from SNP 192844 to 193444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,046 DEBUG Processing 384/706 atomic regions from SNP 115106 to 115706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,050 DEBUG Processing 187/677 atomic regions from SNP 55986 to 56587 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,256 DEBUG Processing 644/724 atomic regions from SNP 193144 to 193744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,290 DEBUG Processing 385/706 atomic regions from SNP 115406 to 116006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,294 DEBUG Processing 188/677 atomic regions from SNP 56287 to 56888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,482 DEBUG Processing 645/724 atomic regions from SNP 193444 to 194044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,530 DEBUG Processing 189/677 atomic regions from SNP 56588 to 57189 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,533 DEBUG Processing 386/706 atomic regions from SNP 115706 to 116306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,705 DEBUG Processing 646/724 atomic regions from SNP 193744 to 194344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,766 DEBUG Processing 387/706 atomic regions from SNP 116006 to 116606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,769 DEBUG Processing 190/677 atomic regions from SNP 56889 to 57490 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,921 DEBUG Processing 647/724 atomic regions from SNP 194044 to 194644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,984 DEBUG Processing 191/677 atomic regions from SNP 57190 to 57791 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,007 DEBUG Processing 388/706 atomic regions from SNP 116306 to 116906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,140 DEBUG Processing 648/724 atomic regions from SNP 194344 to 194944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,200 DEBUG Processing 192/677 atomic regions from SNP 57491 to 58092 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,269 DEBUG Processing 389/706 atomic regions from SNP 116606 to 117206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,372 DEBUG Processing 649/724 atomic regions from SNP 194644 to 195244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,413 DEBUG Processing 193/677 atomic regions from SNP 57792 to 58393 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,528 DEBUG Processing 390/706 atomic regions from SNP 116906 to 117506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,599 DEBUG Processing 650/724 atomic regions from SNP 194944 to 195544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,629 DEBUG Processing 194/677 atomic regions from SNP 58093 to 58694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,714 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:55:07,789 DEBUG Processing 391/706 atomic regions from SNP 117206 to 117806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,833 DEBUG Processing 651/724 atomic regions from SNP 195244 to 195844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,856 DEBUG Processing 195/677 atomic regions from SNP 58394 to 58995 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,048 DEBUG Processing 392/706 atomic regions from SNP 117506 to 118106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,074 DEBUG Processing 652/724 atomic regions from SNP 195544 to 196144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,087 DEBUG Processing 196/677 atomic regions from SNP 58695 to 59296 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,312 DEBUG Processing 393/706 atomic regions from SNP 117806 to 118406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,314 DEBUG Processing 653/724 atomic regions from SNP 195844 to 196444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,318 DEBUG Processing 197/677 atomic regions from SNP 58996 to 59597 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,545 DEBUG Processing 198/677 atomic regions from SNP 59297 to 59898 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,549 DEBUG Processing 654/724 atomic regions from SNP 196144 to 196744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,557 DEBUG Processing 394/706 atomic regions from SNP 118106 to 118706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,776 DEBUG Processing 199/677 atomic regions from SNP 59598 to 60199 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,783 DEBUG Processing 655/724 atomic regions from SNP 196444 to 197044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,818 DEBUG Processing 395/706 atomic regions from SNP 118406 to 119006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,030 DEBUG Processing 656/724 atomic regions from SNP 196744 to 197344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,033 DEBUG Processing 200/677 atomic regions from SNP 59899 to 60500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,077 DEBUG Processing 396/706 atomic regions from SNP 118706 to 119306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,258 DEBUG Processing 657/724 atomic regions from SNP 197044 to 197644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,292 DEBUG Processing 201/677 atomic regions from SNP 60200 to 60801 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,311 DEBUG Processing 397/706 atomic regions from SNP 119006 to 119606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,496 DEBUG Processing 658/724 atomic regions from SNP 197344 to 197944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,524 DEBUG Processing 202/677 atomic regions from SNP 60501 to 61102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,560 DEBUG Processing 398/706 atomic regions from SNP 119306 to 119906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,731 DEBUG Processing 659/724 atomic regions from SNP 197644 to 198244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,751 DEBUG Processing 203/677 atomic regions from SNP 60802 to 61403 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,789 DEBUG Processing 399/706 atomic regions from SNP 119606 to 120206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,965 DEBUG Processing 660/724 atomic regions from SNP 197944 to 198544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,980 DEBUG Processing 204/677 atomic regions from SNP 61103 to 61704 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,019 DEBUG Processing 400/706 atomic regions from SNP 119906 to 120506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,197 DEBUG Processing 661/724 atomic regions from SNP 198244 to 198844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,226 DEBUG Processing 205/677 atomic regions from SNP 61404 to 62005 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,246 DEBUG Processing 401/706 atomic regions from SNP 120206 to 120806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,435 DEBUG Processing 662/724 atomic regions from SNP 198544 to 199144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,467 DEBUG Processing 206/677 atomic regions from SNP 61705 to 62306 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,478 DEBUG Processing 402/706 atomic regions from SNP 120506 to 121106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,684 DEBUG Processing 663/724 atomic regions from SNP 198844 to 199444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,690 DEBUG Processing 207/677 atomic regions from SNP 62006 to 62607 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,710 DEBUG Processing 403/706 atomic regions from SNP 120806 to 121406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,921 DEBUG Processing 208/677 atomic regions from SNP 62307 to 62908 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,924 DEBUG Processing 664/724 atomic regions from SNP 199144 to 199744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,948 DEBUG Processing 404/706 atomic regions from SNP 121106 to 121706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,141 DEBUG Processing 209/677 atomic regions from SNP 62608 to 63209 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,172 DEBUG Processing 665/724 atomic regions from SNP 199444 to 200044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,175 DEBUG Processing 405/706 atomic regions from SNP 121406 to 122006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,364 DEBUG Processing 210/677 atomic regions from SNP 62909 to 63510 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,411 DEBUG Processing 666/724 atomic regions from SNP 199744 to 200344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,418 DEBUG Processing 406/706 atomic regions from SNP 121706 to 122306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,585 DEBUG Processing 211/677 atomic regions from SNP 63210 to 63811 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,645 DEBUG Processing 407/706 atomic regions from SNP 122006 to 122606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,650 DEBUG Processing 667/724 atomic regions from SNP 200044 to 200644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,805 DEBUG Processing 212/677 atomic regions from SNP 63511 to 64112 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,862 DEBUG Processing 408/706 atomic regions from SNP 122306 to 122906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,885 DEBUG Processing 668/724 atomic regions from SNP 200344 to 200944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,026 DEBUG Processing 213/677 atomic regions from SNP 63812 to 64413 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,089 DEBUG Processing 409/706 atomic regions from SNP 122606 to 123206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,124 DEBUG Processing 669/724 atomic regions from SNP 200644 to 201244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,245 DEBUG Processing 214/677 atomic regions from SNP 64113 to 64714 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,322 DEBUG Processing 410/706 atomic regions from SNP 122906 to 123506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,357 DEBUG Processing 670/724 atomic regions from SNP 200944 to 201544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,468 DEBUG Processing 215/677 atomic regions from SNP 64414 to 65015 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,541 DEBUG Processing 411/706 atomic regions from SNP 123206 to 123806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,587 DEBUG Processing 671/724 atomic regions from SNP 201244 to 201844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,690 DEBUG Processing 216/677 atomic regions from SNP 64715 to 65316 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,757 DEBUG Processing 412/706 atomic regions from SNP 123506 to 124106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,818 DEBUG Processing 672/724 atomic regions from SNP 201544 to 202144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,919 DEBUG Processing 217/677 atomic regions from SNP 65016 to 65617 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,983 DEBUG Processing 413/706 atomic regions from SNP 123806 to 124406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,044 DEBUG Processing 673/724 atomic regions from SNP 201844 to 202444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,145 DEBUG Processing 218/677 atomic regions from SNP 65317 to 65918 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,201 DEBUG Processing 414/706 atomic regions from SNP 124106 to 124706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,275 DEBUG Processing 674/724 atomic regions from SNP 202144 to 202744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,393 DEBUG Processing 219/677 atomic regions from SNP 65618 to 66219 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,418 DEBUG Processing 415/706 atomic regions from SNP 124406 to 125006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,507 DEBUG Processing 675/724 atomic regions from SNP 202444 to 203044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,642 DEBUG Processing 416/706 atomic regions from SNP 124706 to 125306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,652 DEBUG Processing 220/677 atomic regions from SNP 65919 to 66520 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,738 DEBUG Processing 676/724 atomic regions from SNP 202744 to 203344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,869 DEBUG Processing 417/706 atomic regions from SNP 125006 to 125606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,898 DEBUG Processing 221/677 atomic regions from SNP 66220 to 66821 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,973 DEBUG Processing 677/724 atomic regions from SNP 203044 to 203644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,095 DEBUG Processing 418/706 atomic regions from SNP 125306 to 125906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,126 DEBUG Processing 222/677 atomic regions from SNP 66521 to 67122 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,203 DEBUG Processing 678/724 atomic regions from SNP 203344 to 203944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,328 DEBUG Processing 419/706 atomic regions from SNP 125606 to 126206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,348 DEBUG Processing 223/677 atomic regions from SNP 66822 to 67423 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,431 DEBUG Processing 679/724 atomic regions from SNP 203644 to 204244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,577 DEBUG Processing 420/706 atomic regions from SNP 125906 to 126506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,578 DEBUG Processing 224/677 atomic regions from SNP 67123 to 67724 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,663 DEBUG Processing 680/724 atomic regions from SNP 203944 to 204544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,802 DEBUG Processing 225/677 atomic regions from SNP 67424 to 68025 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,808 DEBUG Processing 421/706 atomic regions from SNP 126206 to 126806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,888 DEBUG Processing 681/724 atomic regions from SNP 204244 to 204844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,042 DEBUG Processing 226/677 atomic regions from SNP 67725 to 68326 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,071 DEBUG Processing 422/706 atomic regions from SNP 126506 to 127106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,117 DEBUG Processing 682/724 atomic regions from SNP 204544 to 205144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,266 DEBUG Processing 227/677 atomic regions from SNP 68026 to 68627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,323 DEBUG Processing 423/706 atomic regions from SNP 126806 to 127406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,349 DEBUG Processing 683/724 atomic regions from SNP 204844 to 205444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,492 DEBUG Processing 228/677 atomic regions from SNP 68327 to 68928 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,591 DEBUG Processing 684/724 atomic regions from SNP 205144 to 205744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,594 DEBUG Processing 424/706 atomic regions from SNP 127106 to 127706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,714 DEBUG Processing 229/677 atomic regions from SNP 68628 to 69229 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,814 DEBUG Processing 685/724 atomic regions from SNP 205444 to 206044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,831 DEBUG Processing 425/706 atomic regions from SNP 127406 to 128006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,934 DEBUG Processing 230/677 atomic regions from SNP 68929 to 69530 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,044 DEBUG Processing 686/724 atomic regions from SNP 205744 to 206344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,061 DEBUG Processing 426/706 atomic regions from SNP 127706 to 128306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,157 DEBUG Processing 231/677 atomic regions from SNP 69230 to 69831 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,270 DEBUG Processing 687/724 atomic regions from SNP 206044 to 206644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,290 DEBUG Processing 427/706 atomic regions from SNP 128006 to 128606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,382 DEBUG Processing 232/677 atomic regions from SNP 69531 to 70132 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,503 DEBUG Processing 688/724 atomic regions from SNP 206344 to 206944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,507 DEBUG Processing 428/706 atomic regions from SNP 128306 to 128906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,630 DEBUG Processing 233/677 atomic regions from SNP 69832 to 70433 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,732 DEBUG Processing 429/706 atomic regions from SNP 128606 to 129206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,739 DEBUG Processing 689/724 atomic regions from SNP 206644 to 207244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,868 DEBUG Processing 234/677 atomic regions from SNP 70133 to 70734 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,961 DEBUG Processing 430/706 atomic regions from SNP 128906 to 129506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,975 DEBUG Processing 690/724 atomic regions from SNP 206944 to 207544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,114 DEBUG Processing 235/677 atomic regions from SNP 70434 to 71035 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,181 DEBUG Processing 431/706 atomic regions from SNP 129206 to 129806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,211 DEBUG Processing 691/724 atomic regions from SNP 207244 to 207844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,363 DEBUG Processing 236/677 atomic regions from SNP 70735 to 71336 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,408 DEBUG Processing 432/706 atomic regions from SNP 129506 to 130106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,457 DEBUG Processing 692/724 atomic regions from SNP 207544 to 208144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,601 DEBUG Processing 237/677 atomic regions from SNP 71036 to 71637 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,632 DEBUG Processing 433/706 atomic regions from SNP 129806 to 130406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,698 DEBUG Processing 693/724 atomic regions from SNP 207844 to 208444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,831 DEBUG Processing 238/677 atomic regions from SNP 71337 to 71938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,862 DEBUG Processing 434/706 atomic regions from SNP 130106 to 130706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,940 DEBUG Processing 694/724 atomic regions from SNP 208144 to 208744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,067 DEBUG Processing 239/677 atomic regions from SNP 71638 to 72239 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,088 DEBUG Processing 435/706 atomic regions from SNP 130406 to 131006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,205 DEBUG Processing 695/724 atomic regions from SNP 208444 to 209044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,291 DEBUG Processing 240/677 atomic regions from SNP 71939 to 72540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,332 DEBUG Processing 436/706 atomic regions from SNP 130706 to 131306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,463 DEBUG Processing 696/724 atomic regions from SNP 208744 to 209344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,517 DEBUG Processing 241/677 atomic regions from SNP 72240 to 72841 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,567 DEBUG Processing 437/706 atomic regions from SNP 131006 to 131606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,718 DEBUG Processing 697/724 atomic regions from SNP 209044 to 209644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,768 DEBUG Processing 242/677 atomic regions from SNP 72541 to 73142 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,812 DEBUG Processing 438/706 atomic regions from SNP 131306 to 131906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,952 DEBUG Processing 698/724 atomic regions from SNP 209344 to 209944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,023 DEBUG Processing 243/677 atomic regions from SNP 72842 to 73443 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,056 DEBUG Processing 439/706 atomic regions from SNP 131606 to 132206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,188 DEBUG Processing 699/724 atomic regions from SNP 209644 to 210244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,251 DEBUG Processing 244/677 atomic regions from SNP 73143 to 73744 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,309 DEBUG Processing 440/706 atomic regions from SNP 131906 to 132506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,455 DEBUG Processing 700/724 atomic regions from SNP 209944 to 210544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,487 DEBUG Processing 245/677 atomic regions from SNP 73444 to 74045 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,568 DEBUG Processing 441/706 atomic regions from SNP 132206 to 132806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,706 DEBUG Processing 701/724 atomic regions from SNP 210244 to 210844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,714 DEBUG Processing 246/677 atomic regions from SNP 73745 to 74346 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,810 DEBUG Processing 442/706 atomic regions from SNP 132506 to 133106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,948 DEBUG Processing 247/677 atomic regions from SNP 74046 to 74647 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,955 DEBUG Processing 702/724 atomic regions from SNP 210544 to 211144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,050 DEBUG Processing 443/706 atomic regions from SNP 132806 to 133406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,186 DEBUG Processing 248/677 atomic regions from SNP 74347 to 74948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,214 DEBUG Processing 703/724 atomic regions from SNP 210844 to 211444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,268 DEBUG Processing 444/706 atomic regions from SNP 133106 to 133706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,412 DEBUG Processing 249/677 atomic regions from SNP 74648 to 75249 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,447 DEBUG Processing 704/724 atomic regions from SNP 211144 to 211744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,491 DEBUG Processing 445/706 atomic regions from SNP 133406 to 134006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,673 DEBUG Processing 250/677 atomic regions from SNP 74949 to 75550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,691 DEBUG Processing 705/724 atomic regions from SNP 211444 to 212044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,728 DEBUG Processing 446/706 atomic regions from SNP 133706 to 134306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,920 DEBUG Processing 251/677 atomic regions from SNP 75250 to 75851 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,928 DEBUG Processing 706/724 atomic regions from SNP 211744 to 212344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,957 DEBUG Processing 447/706 atomic regions from SNP 134006 to 134606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,986 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:55:21,159 DEBUG Processing 252/677 atomic regions from SNP 75551 to 76152 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,190 DEBUG Processing 448/706 atomic regions from SNP 134306 to 134906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,193 DEBUG Processing 707/724 atomic regions from SNP 212044 to 212644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,385 DEBUG Processing 253/677 atomic regions from SNP 75852 to 76453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,421 DEBUG Processing 449/706 atomic regions from SNP 134606 to 135206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,453 DEBUG Processing 708/724 atomic regions from SNP 212344 to 212944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,612 DEBUG Processing 254/677 atomic regions from SNP 76153 to 76754 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,664 DEBUG Processing 450/706 atomic regions from SNP 134906 to 135506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,704 DEBUG Processing 709/724 atomic regions from SNP 212644 to 213244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,849 DEBUG Processing 255/677 atomic regions from SNP 76454 to 77055 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,897 DEBUG Processing 451/706 atomic regions from SNP 135206 to 135806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,920 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:55:21,922 DEBUG chr15: Signal quantile: 0.990. signal threshold: 15. Best RMSEA: 0.013 2025-01-31 09:55:21,972 DEBUG Processing 710/724 atomic regions from SNP 212944 to 213544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,088 DEBUG Processing 256/677 atomic regions from SNP 76755 to 77356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,130 DEBUG Processing 452/706 atomic regions from SNP 135506 to 136106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,239 DEBUG Processing 711/724 atomic regions from SNP 213244 to 213844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,335 DEBUG Processing 257/677 atomic regions from SNP 77056 to 77657 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,352 DEBUG Processing 453/706 atomic regions from SNP 135806 to 136406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,493 DEBUG Processing 712/724 atomic regions from SNP 213544 to 214144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,571 DEBUG Processing 454/706 atomic regions from SNP 136106 to 136706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,593 DEBUG Processing 258/677 atomic regions from SNP 77357 to 77958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,735 DEBUG Processing 713/724 atomic regions from SNP 213844 to 214444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,787 DEBUG Processing 455/706 atomic regions from SNP 136406 to 137006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,821 DEBUG Processing 259/677 atomic regions from SNP 77658 to 78259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,987 DEBUG Processing 714/724 atomic regions from SNP 214144 to 214744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,004 DEBUG Processing 456/706 atomic regions from SNP 136706 to 137306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,046 DEBUG Processing 260/677 atomic regions from SNP 77959 to 78560 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,228 DEBUG Processing 715/724 atomic regions from SNP 214444 to 215044 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,228 DEBUG Processing 457/706 atomic regions from SNP 137006 to 137606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,280 DEBUG Processing 261/677 atomic regions from SNP 78260 to 78861 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,454 DEBUG Processing 458/706 atomic regions from SNP 137306 to 137906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,468 DEBUG Processing 716/724 atomic regions from SNP 214744 to 215344 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,502 DEBUG Processing 262/677 atomic regions from SNP 78561 to 79162 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,681 DEBUG Processing 459/706 atomic regions from SNP 137606 to 138206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,708 DEBUG Processing 717/724 atomic regions from SNP 215044 to 215644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,730 DEBUG Processing 263/677 atomic regions from SNP 78862 to 79463 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,879 DEBUG chr15 total SNP count: 180425 2025-01-31 09:55:23,880 DEBUG chr15 length: 104043685 2025-01-31 09:55:23,880 DEBUG ----------------------------------------- 2025-01-31 09:55:23,880 INFO Processing SNPs in chr15 2025-01-31 09:55:23,907 DEBUG Processing 460/706 atomic regions from SNP 137906 to 138506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,950 DEBUG Processing 718/724 atomic regions from SNP 215344 to 215944 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,962 DEBUG Processing 264/677 atomic regions from SNP 79163 to 79764 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,061 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 180425)] 2025-01-31 09:55:24,125 DEBUG Processing 461/706 atomic regions from SNP 138206 to 138806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,186 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:24,192 DEBUG Processing 265/677 atomic regions from SNP 79464 to 80065 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,210 DEBUG Processing 719/724 atomic regions from SNP 215644 to 216244 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,342 DEBUG Processing 462/706 atomic regions from SNP 138506 to 139106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,444 DEBUG Processing 266/677 atomic regions from SNP 79765 to 80366 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,477 DEBUG Processing 720/724 atomic regions from SNP 215944 to 216544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,561 DEBUG Processing 463/706 atomic regions from SNP 138806 to 139406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,697 DEBUG Processing 267/677 atomic regions from SNP 80066 to 80667 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,717 DEBUG Processing 721/724 atomic regions from SNP 216244 to 216844 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,766 DEBUG Processing 464/706 atomic regions from SNP 139106 to 139706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,951 DEBUG Processing 268/677 atomic regions from SNP 80367 to 80968 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,956 DEBUG Processing 722/724 atomic regions from SNP 216544 to 217144 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,978 DEBUG Processing 465/706 atomic regions from SNP 139406 to 140006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,199 DEBUG Processing 723/724 atomic regions from SNP 216844 to 217444 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,203 DEBUG Processing 466/706 atomic regions from SNP 139706 to 140306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,219 DEBUG Processing 269/677 atomic regions from SNP 80668 to 81269 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,433 DEBUG Processing 467/706 atomic regions from SNP 140006 to 140606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,441 DEBUG Processing 724/724 atomic regions from SNP 217144 to 217744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,482 DEBUG Processing 270/677 atomic regions from SNP 80969 to 81570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,616 DEBUG Unique SNPs positions in subchromosome 1: 217745 2025-01-31 09:55:25,667 DEBUG Processing 468/706 atomic regions from SNP 140306 to 140906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,764 DEBUG Processing 271/677 atomic regions from SNP 81270 to 81870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,926 DEBUG Processing 469/706 atomic regions from SNP 140606 to 141206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,022 DEBUG Processing 272/677 atomic regions from SNP 81570 to 82170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,157 DEBUG Processing 470/706 atomic regions from SNP 140906 to 141506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,237 DEBUG Segmenting atomic regions: 2025-01-31 09:55:26,261 DEBUG Processing 273/677 atomic regions from SNP 81870 to 82470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,324 DEBUG Processing 1/664 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,395 DEBUG Processing 471/706 atomic regions from SNP 141206 to 141806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,493 DEBUG Processing 274/677 atomic regions from SNP 82170 to 82770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,532 DEBUG Processing 2/664 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,623 DEBUG Processing 472/706 atomic regions from SNP 141506 to 142106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,718 DEBUG Processing 275/677 atomic regions from SNP 82470 to 83070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,756 DEBUG Processing 3/664 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,837 DEBUG Processing 473/706 atomic regions from SNP 141806 to 142406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,943 DEBUG Processing 276/677 atomic regions from SNP 82770 to 83370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,971 DEBUG Processing 4/664 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,048 DEBUG Processing 474/706 atomic regions from SNP 142106 to 142706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,166 DEBUG Processing 277/677 atomic regions from SNP 83070 to 83670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,185 DEBUG Processing 5/664 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,261 DEBUG Processing 475/706 atomic regions from SNP 142406 to 143006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,396 DEBUG Processing 278/677 atomic regions from SNP 83370 to 83970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,416 DEBUG Processing 6/664 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,477 DEBUG Processing 476/706 atomic regions from SNP 142706 to 143306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,630 DEBUG Processing 279/677 atomic regions from SNP 83670 to 84270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,645 DEBUG Processing 7/664 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,696 DEBUG Processing 477/706 atomic regions from SNP 143006 to 143606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,867 DEBUG Processing 280/677 atomic regions from SNP 83970 to 84570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,874 DEBUG Processing 8/664 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,910 DEBUG Processing 478/706 atomic regions from SNP 143306 to 143906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,095 DEBUG Processing 281/677 atomic regions from SNP 84270 to 84870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,096 DEBUG Processing 9/664 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,138 DEBUG Processing 479/706 atomic regions from SNP 143606 to 144206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,325 DEBUG Processing 282/677 atomic regions from SNP 84570 to 85170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,325 DEBUG Processing 10/664 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,392 DEBUG Processing 480/706 atomic regions from SNP 143906 to 144506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,565 DEBUG Processing 11/664 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,574 DEBUG Processing 283/677 atomic regions from SNP 84870 to 85470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,650 DEBUG Processing 481/706 atomic regions from SNP 144206 to 144806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,806 DEBUG Processing 284/677 atomic regions from SNP 85170 to 85770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,809 DEBUG Processing 12/664 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,880 DEBUG Processing 482/706 atomic regions from SNP 144506 to 145106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,020 DEBUG Processing 285/677 atomic regions from SNP 85470 to 86070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,027 DEBUG Processing 13/664 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,098 DEBUG Processing 483/706 atomic regions from SNP 144806 to 145406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,233 DEBUG Processing 286/677 atomic regions from SNP 85770 to 86370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,247 DEBUG Processing 14/664 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,335 DEBUG Processing 484/706 atomic regions from SNP 145106 to 145706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,448 DEBUG Processing 287/677 atomic regions from SNP 86070 to 86670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,456 DEBUG Processing 15/664 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,548 DEBUG Processing 485/706 atomic regions from SNP 145406 to 146006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,671 DEBUG Processing 16/664 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,672 DEBUG Processing 288/677 atomic regions from SNP 86370 to 86970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,767 DEBUG Processing 486/706 atomic regions from SNP 145706 to 146306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,885 DEBUG Processing 17/664 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,905 DEBUG Processing 289/677 atomic regions from SNP 86670 to 87270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,016 DEBUG Processing 487/706 atomic regions from SNP 146006 to 146606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,094 DEBUG Processing 18/664 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,140 DEBUG Processing 290/677 atomic regions from SNP 86970 to 87570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,249 DEBUG Processing 488/706 atomic regions from SNP 146306 to 146906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,303 DEBUG Processing 19/664 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,365 DEBUG Processing 291/677 atomic regions from SNP 87270 to 87870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,475 DEBUG Processing 489/706 atomic regions from SNP 146606 to 147206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,515 DEBUG Processing 20/664 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,593 DEBUG Processing 292/677 atomic regions from SNP 87570 to 88170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,700 DEBUG Processing 490/706 atomic regions from SNP 146906 to 147506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,729 DEBUG Processing 21/664 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,811 DEBUG Processing 293/677 atomic regions from SNP 87870 to 88470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,928 DEBUG Processing 491/706 atomic regions from SNP 147206 to 147806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,951 DEBUG Processing 22/664 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,035 DEBUG Processing 294/677 atomic regions from SNP 88170 to 88770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,169 DEBUG Processing 492/706 atomic regions from SNP 147506 to 148106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,176 DEBUG Processing 23/664 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,264 DEBUG Processing 295/677 atomic regions from SNP 88470 to 89070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,403 DEBUG Processing 493/706 atomic regions from SNP 147806 to 148406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,405 DEBUG Processing 24/664 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,484 DEBUG Processing 296/677 atomic regions from SNP 88770 to 89370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,634 DEBUG Processing 25/664 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,654 DEBUG Processing 494/706 atomic regions from SNP 148106 to 148706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,710 DEBUG Processing 297/677 atomic regions from SNP 89070 to 89670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,869 DEBUG Processing 26/664 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,899 DEBUG Processing 495/706 atomic regions from SNP 148406 to 149006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,933 DEBUG Processing 298/677 atomic regions from SNP 89370 to 89970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,017 DEBUG Subchromosome time: 204.24122686497867, subchromosome SNPs: 217745 2025-01-31 09:55:32,017 DEBUG Estimated BADs: [0.69, 1.38, 0.69, 6.89, 1.38, 0.28, 1.38, 2.76, 13.79, 2.76, 1.38, 4.14, 1.38, 2.76, 1.38, 0.69, 0.46, 1.38, 4.14, 2.76, 1.38, 2.76] SNP counts: [17888, 2676, 9183, 3157, 28312, 2694, 6384, 2239, 277, 2851, 20157, 5502, 4060, 9569, 21889, 19802, 6472, 21519, 5027, 2987, 15885, 9215] SNP IDs counts: [17888, 2676, 9183, 3157, 28312, 2694, 6384, 2239, 277, 2851, 20157, 5502, 4060, 9569, 21889, 19802, 6472, 21519, 5027, 2987, 15885, 9215] Critical gap: 598026bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.74Mbp, 15.19Mbp, 20.63Mbp, 22.31Mbp, 38.03Mbp, 39.64Mbp, 43.10Mbp, 44.27Mbp, 44.42Mbp, 45.91Mbp, 56.85Mbp, 59.75Mbp, 61.89Mbp, 66.94Mbp, 78.94Mbp, 90.72Mbp, 94.53Mbp, 106.15Mbp, 108.83Mbp, 110.62Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:55:32,017 DEBUG chr9 time: 204.2417768780142 s 2025-01-31 09:55:32,054 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:55:32,055 DEBUG chr16: Signal quantile: 0.993. signal threshold: 14. Best RMSEA: 0.018 2025-01-31 09:55:32,094 DEBUG Processing 27/664 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,132 DEBUG Processing 496/706 atomic regions from SNP 148706 to 149306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,157 DEBUG Processing 299/677 atomic regions from SNP 89670 to 90270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,160 DEBUG chr9: Fitting background model for 22 segments 2025-01-31 09:55:32,319 DEBUG Processing 28/664 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,389 DEBUG Processing 300/677 atomic regions from SNP 89970 to 90570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,393 DEBUG Processing 497/706 atomic regions from SNP 149006 to 149606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,539 DEBUG Processing 29/664 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,648 DEBUG Processing 498/706 atomic regions from SNP 149306 to 149906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,648 DEBUG Processing 301/677 atomic regions from SNP 90270 to 90870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,750 DEBUG Processing 30/664 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,912 DEBUG Processing 499/706 atomic regions from SNP 149606 to 150206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,913 DEBUG Processing 302/677 atomic regions from SNP 90570 to 91170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,968 DEBUG Processing 31/664 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,145 DEBUG Processing 500/706 atomic regions from SNP 149906 to 150506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,177 DEBUG Processing 303/677 atomic regions from SNP 90870 to 91470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,194 DEBUG Processing 32/664 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,394 DEBUG Processing 501/706 atomic regions from SNP 150206 to 150806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,425 DEBUG Processing 304/677 atomic regions from SNP 91170 to 91770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,427 DEBUG Processing 33/664 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,627 DEBUG Processing 502/706 atomic regions from SNP 150506 to 151106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,655 DEBUG Processing 34/664 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,694 DEBUG Processing 305/677 atomic regions from SNP 91470 to 92070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,846 DEBUG Processing 503/706 atomic regions from SNP 150806 to 151406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,877 DEBUG Processing 35/664 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,938 DEBUG chr16 total SNP count: 169291 2025-01-31 09:55:33,938 DEBUG chr16 length: 98207768 2025-01-31 09:55:33,939 DEBUG ----------------------------------------- 2025-01-31 09:55:33,939 INFO Processing SNPs in chr16 2025-01-31 09:55:33,966 DEBUG Processing 306/677 atomic regions from SNP 91770 to 92370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,066 DEBUG Processing 504/706 atomic regions from SNP 151106 to 151706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,094 DEBUG Processing 36/664 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,108 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 169291)] 2025-01-31 09:55:34,223 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:34,243 DEBUG Processing 307/677 atomic regions from SNP 92070 to 92670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,286 DEBUG Processing 505/706 atomic regions from SNP 151406 to 152006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,305 DEBUG Processing 37/664 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,511 DEBUG Processing 506/706 atomic regions from SNP 151706 to 152306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,521 DEBUG Processing 38/664 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,522 DEBUG Processing 308/677 atomic regions from SNP 92370 to 92970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,745 DEBUG Processing 39/664 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,748 DEBUG Processing 507/706 atomic regions from SNP 152006 to 152606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,788 DEBUG Processing 309/677 atomic regions from SNP 92670 to 93270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,956 DEBUG Processing 40/664 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,967 DEBUG Processing 508/706 atomic regions from SNP 152306 to 152906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,024 DEBUG Processing 310/677 atomic regions from SNP 92970 to 93570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,166 DEBUG Processing 41/664 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,181 DEBUG Processing 509/706 atomic regions from SNP 152606 to 153206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,259 DEBUG Processing 311/677 atomic regions from SNP 93270 to 93870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,377 DEBUG Processing 42/664 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,394 DEBUG Processing 510/706 atomic regions from SNP 152906 to 153506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,488 DEBUG Processing 312/677 atomic regions from SNP 93570 to 94170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,588 DEBUG Processing 43/664 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,606 DEBUG Processing 511/706 atomic regions from SNP 153206 to 153806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,719 DEBUG Processing 313/677 atomic regions from SNP 93870 to 94470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,808 DEBUG Processing 44/664 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,824 DEBUG Processing 512/706 atomic regions from SNP 153506 to 154106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,943 DEBUG Processing 314/677 atomic regions from SNP 94170 to 94770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,025 DEBUG Processing 45/664 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,046 DEBUG Processing 513/706 atomic regions from SNP 153806 to 154406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,171 DEBUG Processing 315/677 atomic regions from SNP 94470 to 95070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,253 DEBUG Processing 46/664 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,281 DEBUG Processing 514/706 atomic regions from SNP 154106 to 154706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,398 DEBUG Processing 316/677 atomic regions from SNP 94770 to 95370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,477 DEBUG Processing 47/664 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,518 DEBUG Processing 515/706 atomic regions from SNP 154406 to 155006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,628 DEBUG Processing 317/677 atomic regions from SNP 95070 to 95670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,686 DEBUG Processing 48/664 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,743 DEBUG Processing 516/706 atomic regions from SNP 154706 to 155306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,862 DEBUG Processing 318/677 atomic regions from SNP 95370 to 95970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,890 DEBUG Processing 49/664 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,964 DEBUG Processing 517/706 atomic regions from SNP 155006 to 155606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,093 DEBUG Processing 50/664 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,093 DEBUG Processing 319/677 atomic regions from SNP 95670 to 96270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,181 DEBUG Processing 518/706 atomic regions from SNP 155306 to 155906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,313 DEBUG Processing 51/664 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,320 DEBUG Processing 320/677 atomic regions from SNP 95970 to 96570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,394 DEBUG Processing 519/706 atomic regions from SNP 155606 to 156206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,517 DEBUG Processing 52/664 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,545 DEBUG Processing 321/677 atomic regions from SNP 96270 to 96870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,601 DEBUG Processing 520/706 atomic regions from SNP 155906 to 156506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,728 DEBUG Processing 53/664 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,769 DEBUG Processing 322/677 atomic regions from SNP 96570 to 97170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,809 DEBUG Processing 521/706 atomic regions from SNP 156206 to 156806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,940 DEBUG Processing 54/664 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,994 DEBUG Processing 323/677 atomic regions from SNP 96870 to 97470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,018 DEBUG Processing 522/706 atomic regions from SNP 156506 to 157106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,156 DEBUG Processing 55/664 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,236 DEBUG Processing 523/706 atomic regions from SNP 156806 to 157406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,255 DEBUG Processing 324/677 atomic regions from SNP 97170 to 97770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,367 DEBUG Processing 56/664 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,453 DEBUG Processing 524/706 atomic regions from SNP 157106 to 157706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,516 DEBUG Processing 325/677 atomic regions from SNP 97470 to 98070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,575 DEBUG Processing 57/664 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,674 DEBUG Processing 525/706 atomic regions from SNP 157406 to 158006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,780 DEBUG Processing 326/677 atomic regions from SNP 97770 to 98370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,784 DEBUG Processing 58/664 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,896 DEBUG Processing 526/706 atomic regions from SNP 157706 to 158306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,996 DEBUG Processing 59/664 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,029 DEBUG Processing 327/677 atomic regions from SNP 98070 to 98670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,122 DEBUG Processing 527/706 atomic regions from SNP 158006 to 158606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,222 DEBUG Processing 60/664 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,270 DEBUG Processing 328/677 atomic regions from SNP 98370 to 98970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,340 DEBUG Processing 528/706 atomic regions from SNP 158306 to 158906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,432 DEBUG Processing 61/664 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,516 DEBUG Processing 329/677 atomic regions from SNP 98670 to 99270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,564 DEBUG Processing 529/706 atomic regions from SNP 158606 to 159206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,644 DEBUG Processing 62/664 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,747 DEBUG Processing 330/677 atomic regions from SNP 98970 to 99570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,791 DEBUG Processing 530/706 atomic regions from SNP 158906 to 159506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,860 DEBUG Processing 63/664 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,972 DEBUG Processing 331/677 atomic regions from SNP 99270 to 99870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,017 DEBUG Processing 531/706 atomic regions from SNP 159206 to 159806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,076 DEBUG Processing 64/664 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,199 DEBUG Processing 332/677 atomic regions from SNP 99570 to 100170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,237 DEBUG Processing 532/706 atomic regions from SNP 159506 to 160106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,295 DEBUG Processing 65/664 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,442 DEBUG Processing 333/677 atomic regions from SNP 99870 to 100470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,457 DEBUG Processing 533/706 atomic regions from SNP 159806 to 160406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,515 DEBUG Processing 66/664 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,668 DEBUG Processing 534/706 atomic regions from SNP 160106 to 160706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,692 DEBUG Processing 334/677 atomic regions from SNP 100170 to 100770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,730 DEBUG Processing 67/664 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,879 DEBUG Processing 535/706 atomic regions from SNP 160406 to 161006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,938 DEBUG Processing 335/677 atomic regions from SNP 100470 to 101070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,944 DEBUG Processing 68/664 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,096 DEBUG Processing 536/706 atomic regions from SNP 160706 to 161306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,159 DEBUG Processing 69/664 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,168 DEBUG Processing 336/677 atomic regions from SNP 100770 to 101370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,325 DEBUG Processing 537/706 atomic regions from SNP 161006 to 161606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,363 DEBUG Processing 70/664 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,387 DEBUG Processing 337/677 atomic regions from SNP 101070 to 101670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,570 DEBUG Processing 538/706 atomic regions from SNP 161306 to 161906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,570 DEBUG Processing 71/664 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,615 DEBUG Processing 338/677 atomic regions from SNP 101370 to 101970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,789 DEBUG Processing 72/664 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,809 DEBUG Processing 539/706 atomic regions from SNP 161606 to 162206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,853 DEBUG Processing 339/677 atomic regions from SNP 101670 to 102270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,004 DEBUG Processing 73/664 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,043 DEBUG Processing 540/706 atomic regions from SNP 161906 to 162506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,091 DEBUG Processing 340/677 atomic regions from SNP 101970 to 102570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,218 DEBUG Processing 74/664 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,268 DEBUG Processing 541/706 atomic regions from SNP 162206 to 162806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,335 DEBUG Processing 341/677 atomic regions from SNP 102270 to 102870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,428 DEBUG Processing 75/664 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,507 DEBUG Processing 542/706 atomic regions from SNP 162506 to 163106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,567 DEBUG Processing 342/677 atomic regions from SNP 102570 to 103170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,635 DEBUG Processing 76/664 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,740 DEBUG Processing 543/706 atomic regions from SNP 162806 to 163406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,799 DEBUG Processing 343/677 atomic regions from SNP 102870 to 103470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,864 DEBUG Processing 77/664 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,008 DEBUG Processing 544/706 atomic regions from SNP 163106 to 163706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,059 DEBUG Processing 344/677 atomic regions from SNP 103170 to 103770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,080 DEBUG Processing 78/664 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,246 DEBUG Processing 545/706 atomic regions from SNP 163406 to 164006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,291 DEBUG Processing 345/677 atomic regions from SNP 103470 to 104070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,293 DEBUG Processing 79/664 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,470 DEBUG Processing 546/706 atomic regions from SNP 163706 to 164306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,512 DEBUG Processing 80/664 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,521 DEBUG Processing 346/677 atomic regions from SNP 103770 to 104370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,698 DEBUG Processing 547/706 atomic regions from SNP 164006 to 164606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,721 DEBUG Processing 81/664 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,747 DEBUG Processing 347/677 atomic regions from SNP 104070 to 104670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,927 DEBUG Processing 548/706 atomic regions from SNP 164306 to 164906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,949 DEBUG Processing 82/664 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,980 DEBUG Processing 348/677 atomic regions from SNP 104370 to 104970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,159 DEBUG Processing 549/706 atomic regions from SNP 164606 to 165206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,167 DEBUG Processing 83/664 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,214 DEBUG Processing 349/677 atomic regions from SNP 104670 to 105270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,371 DEBUG Processing 550/706 atomic regions from SNP 164906 to 165506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,374 DEBUG Processing 84/664 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,449 DEBUG Processing 350/677 atomic regions from SNP 104970 to 105570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,580 DEBUG Processing 85/664 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,586 DEBUG Processing 551/706 atomic regions from SNP 165206 to 165806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,707 DEBUG Processing 351/677 atomic regions from SNP 105270 to 105870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,798 DEBUG Processing 552/706 atomic regions from SNP 165506 to 166106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,811 DEBUG Processing 86/664 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,964 DEBUG Processing 352/677 atomic regions from SNP 105570 to 106170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,006 DEBUG Processing 553/706 atomic regions from SNP 165806 to 166406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,036 DEBUG Processing 87/664 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,206 DEBUG Processing 353/677 atomic regions from SNP 105870 to 106470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,237 DEBUG Processing 554/706 atomic regions from SNP 166106 to 166706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,245 DEBUG Processing 88/664 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,450 DEBUG Processing 354/677 atomic regions from SNP 106170 to 106770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,451 DEBUG Processing 89/664 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,482 DEBUG Processing 555/706 atomic regions from SNP 166406 to 167006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,657 DEBUG Processing 90/664 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,692 DEBUG Processing 355/677 atomic regions from SNP 106470 to 107070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,725 DEBUG Processing 556/706 atomic regions from SNP 166706 to 167306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,863 DEBUG Processing 91/664 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,933 DEBUG Processing 356/677 atomic regions from SNP 106770 to 107370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,967 DEBUG Processing 557/706 atomic regions from SNP 167006 to 167606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,062 DEBUG Processing 92/664 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,180 DEBUG Processing 357/677 atomic regions from SNP 107070 to 107670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,213 DEBUG Processing 558/706 atomic regions from SNP 167306 to 167906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,267 DEBUG Processing 93/664 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,393 DEBUG Segmenting atomic regions: 2025-01-31 09:55:46,440 DEBUG Processing 358/677 atomic regions from SNP 107370 to 107970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,467 DEBUG Processing 559/706 atomic regions from SNP 167606 to 168206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,475 DEBUG Processing 1/600 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,481 DEBUG Processing 94/664 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,682 DEBUG Processing 2/600 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,691 DEBUG Processing 95/664 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,706 DEBUG Processing 359/677 atomic regions from SNP 107670 to 108270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,715 DEBUG Processing 560/706 atomic regions from SNP 167906 to 168506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,895 DEBUG Processing 3/600 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,907 DEBUG Processing 96/664 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,949 DEBUG Processing 360/677 atomic regions from SNP 107970 to 108570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,965 DEBUG Processing 561/706 atomic regions from SNP 168206 to 168806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,102 DEBUG Processing 4/600 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,123 DEBUG Processing 97/664 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,182 DEBUG Processing 361/677 atomic regions from SNP 108270 to 108870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,204 DEBUG Processing 562/706 atomic regions from SNP 168506 to 169106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,310 DEBUG Processing 5/600 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,355 DEBUG Processing 98/664 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,413 DEBUG Processing 362/677 atomic regions from SNP 108570 to 109170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,434 DEBUG Processing 563/706 atomic regions from SNP 168806 to 169406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,519 DEBUG Processing 6/600 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,570 DEBUG Processing 99/664 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,643 DEBUG Processing 363/677 atomic regions from SNP 108870 to 109470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,670 DEBUG Processing 564/706 atomic regions from SNP 169106 to 169706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,724 DEBUG Processing 7/600 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,786 DEBUG Processing 100/664 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,870 DEBUG Processing 364/677 atomic regions from SNP 109170 to 109770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,918 DEBUG Processing 565/706 atomic regions from SNP 169406 to 170006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,930 DEBUG Processing 8/600 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,002 DEBUG Processing 101/664 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,094 DEBUG Processing 365/677 atomic regions from SNP 109470 to 110070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,136 DEBUG Processing 9/600 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,168 DEBUG Processing 566/706 atomic regions from SNP 169706 to 170306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,232 DEBUG Processing 102/664 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,337 DEBUG Processing 366/677 atomic regions from SNP 109770 to 110370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,343 DEBUG Processing 10/600 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,429 DEBUG Processing 567/706 atomic regions from SNP 170006 to 170606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,487 DEBUG Processing 103/664 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,541 DEBUG Processing 11/600 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,558 DEBUG Processing 367/677 atomic regions from SNP 110070 to 110670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,661 DEBUG Processing 568/706 atomic regions from SNP 170306 to 170906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,734 DEBUG Processing 104/664 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,760 DEBUG Processing 12/600 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,782 DEBUG Processing 368/677 atomic regions from SNP 110370 to 110970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,883 DEBUG Processing 569/706 atomic regions from SNP 170606 to 171206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,973 DEBUG Processing 105/664 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,981 DEBUG Processing 13/600 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,002 DEBUG Processing 369/677 atomic regions from SNP 110670 to 111270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,101 DEBUG Processing 570/706 atomic regions from SNP 170906 to 171506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,184 DEBUG Processing 14/600 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,213 DEBUG Processing 106/664 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,226 DEBUG Processing 370/677 atomic regions from SNP 110970 to 111570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,317 DEBUG Processing 571/706 atomic regions from SNP 171206 to 171806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,387 DEBUG Processing 15/600 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,428 DEBUG Processing 107/664 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,457 DEBUG Processing 371/677 atomic regions from SNP 111270 to 111870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,535 DEBUG Processing 572/706 atomic regions from SNP 171506 to 172106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,595 DEBUG Processing 16/600 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,645 DEBUG Processing 108/664 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,687 DEBUG Processing 372/677 atomic regions from SNP 111570 to 112170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,755 DEBUG Processing 573/706 atomic regions from SNP 171806 to 172406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,800 DEBUG Processing 17/600 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,861 DEBUG Processing 109/664 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,919 DEBUG Processing 373/677 atomic regions from SNP 111870 to 112470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,973 DEBUG Processing 574/706 atomic regions from SNP 172106 to 172706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,006 DEBUG Processing 18/600 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,074 DEBUG Processing 110/664 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,154 DEBUG Processing 374/677 atomic regions from SNP 112170 to 112770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,210 DEBUG Processing 19/600 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,235 DEBUG Processing 575/706 atomic regions from SNP 172406 to 173006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,289 DEBUG Processing 111/664 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,394 DEBUG Processing 375/677 atomic regions from SNP 112470 to 113070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,424 DEBUG Processing 20/600 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,480 DEBUG Processing 576/706 atomic regions from SNP 172706 to 173306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,512 DEBUG Processing 112/664 atomic regions from SNP 33411 to 34012 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,631 DEBUG Processing 376/677 atomic regions from SNP 112770 to 113370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,637 DEBUG Processing 21/600 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,740 DEBUG Processing 577/706 atomic regions from SNP 173006 to 173606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,742 DEBUG Processing 113/664 atomic regions from SNP 33712 to 34313 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,855 DEBUG Processing 22/600 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,872 DEBUG Processing 377/677 atomic regions from SNP 113070 to 113670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,962 DEBUG Processing 114/664 atomic regions from SNP 34013 to 34614 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,984 DEBUG Processing 578/706 atomic regions from SNP 173306 to 173906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,061 DEBUG Processing 23/600 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,112 DEBUG Processing 378/677 atomic regions from SNP 113370 to 113970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,179 DEBUG Processing 115/664 atomic regions from SNP 34314 to 34915 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,214 DEBUG Processing 579/706 atomic regions from SNP 173606 to 174206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,263 DEBUG Processing 24/600 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,370 DEBUG Processing 379/677 atomic regions from SNP 113670 to 114270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,384 DEBUG Processing 116/664 atomic regions from SNP 34615 to 35216 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,462 DEBUG Processing 580/706 atomic regions from SNP 173906 to 174506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,471 DEBUG Processing 25/600 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,590 DEBUG Processing 117/664 atomic regions from SNP 34916 to 35517 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,615 DEBUG Processing 380/677 atomic regions from SNP 113970 to 114570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,683 DEBUG Processing 26/600 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,718 DEBUG Processing 581/706 atomic regions from SNP 174206 to 174806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,796 DEBUG Processing 118/664 atomic regions from SNP 35217 to 35818 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,846 DEBUG Processing 381/677 atomic regions from SNP 114270 to 114870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,890 DEBUG Processing 27/600 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,969 DEBUG Processing 582/706 atomic regions from SNP 174506 to 175106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,006 DEBUG Processing 119/664 atomic regions from SNP 35518 to 36119 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,065 DEBUG Processing 382/677 atomic regions from SNP 114570 to 115170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,110 DEBUG Processing 28/600 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,220 DEBUG Processing 120/664 atomic regions from SNP 35819 to 36420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,223 DEBUG Processing 583/706 atomic regions from SNP 174806 to 175406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,290 DEBUG Processing 383/677 atomic regions from SNP 114870 to 115470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,324 DEBUG Processing 29/600 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,439 DEBUG Processing 121/664 atomic regions from SNP 36120 to 36721 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,468 DEBUG Processing 584/706 atomic regions from SNP 175106 to 175706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,513 DEBUG Processing 384/677 atomic regions from SNP 115170 to 115770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,563 DEBUG Processing 30/600 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,656 DEBUG Processing 122/664 atomic regions from SNP 36421 to 37022 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,697 DEBUG Processing 585/706 atomic regions from SNP 175406 to 176006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,742 DEBUG Processing 385/677 atomic regions from SNP 115470 to 116070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,773 DEBUG Processing 31/600 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,872 DEBUG Processing 123/664 atomic regions from SNP 36722 to 37323 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,946 DEBUG Processing 586/706 atomic regions from SNP 175706 to 176306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,971 DEBUG Processing 386/677 atomic regions from SNP 115770 to 116370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,983 DEBUG Processing 32/600 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,091 DEBUG Processing 124/664 atomic regions from SNP 37023 to 37624 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,189 DEBUG Processing 33/600 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,195 DEBUG Processing 587/706 atomic regions from SNP 176006 to 176606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,201 DEBUG Processing 387/677 atomic regions from SNP 116070 to 116670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,295 DEBUG Processing 125/664 atomic regions from SNP 37324 to 37925 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,383 DEBUG Processing 34/600 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,429 DEBUG Processing 388/677 atomic regions from SNP 116370 to 116970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,437 DEBUG Processing 588/706 atomic regions from SNP 176306 to 176906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,502 DEBUG Processing 126/664 atomic regions from SNP 37625 to 38226 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,596 DEBUG Processing 35/600 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,654 DEBUG Processing 389/677 atomic regions from SNP 116670 to 117270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,662 DEBUG Processing 589/706 atomic regions from SNP 176606 to 177206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,727 DEBUG Processing 127/664 atomic regions from SNP 37926 to 38527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,814 DEBUG Processing 36/600 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,876 DEBUG Processing 590/706 atomic regions from SNP 176906 to 177506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,882 DEBUG Processing 390/677 atomic regions from SNP 116970 to 117570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,967 DEBUG Processing 128/664 atomic regions from SNP 38227 to 38828 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,014 DEBUG Processing 37/600 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,098 DEBUG Processing 591/706 atomic regions from SNP 177206 to 177806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,113 DEBUG Processing 391/677 atomic regions from SNP 117270 to 117870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,194 DEBUG Processing 129/664 atomic regions from SNP 38528 to 39129 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,215 DEBUG Processing 38/600 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,333 DEBUG Processing 592/706 atomic regions from SNP 177506 to 178106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,337 DEBUG Processing 392/677 atomic regions from SNP 117570 to 118170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,403 DEBUG Processing 130/664 atomic regions from SNP 38829 to 39430 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,416 DEBUG Processing 39/600 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,567 DEBUG Processing 393/677 atomic regions from SNP 117870 to 118470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,568 DEBUG Processing 593/706 atomic regions from SNP 177806 to 178406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,611 DEBUG Processing 131/664 atomic regions from SNP 39130 to 39731 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,615 DEBUG Processing 40/600 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,778 DEBUG Processing 594/706 atomic regions from SNP 178106 to 178706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,794 DEBUG Processing 394/677 atomic regions from SNP 118170 to 118770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,807 DEBUG Processing 41/600 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,814 DEBUG Processing 132/664 atomic regions from SNP 39431 to 40032 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,987 DEBUG Processing 595/706 atomic regions from SNP 178406 to 179006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,002 DEBUG Processing 42/600 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,017 DEBUG Processing 133/664 atomic regions from SNP 39732 to 40333 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,022 DEBUG Processing 395/677 atomic regions from SNP 118470 to 119070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,201 DEBUG Processing 43/600 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,204 DEBUG Processing 596/706 atomic regions from SNP 178706 to 179306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,226 DEBUG Processing 134/664 atomic regions from SNP 40033 to 40634 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,263 DEBUG Processing 396/677 atomic regions from SNP 118770 to 119370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,334 DEBUG Segmenting atomic regions: 2025-01-31 09:55:55,401 DEBUG Processing 44/600 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,407 DEBUG Processing 1/563 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,420 DEBUG Processing 597/706 atomic regions from SNP 179006 to 179606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,435 DEBUG Processing 135/664 atomic regions from SNP 40334 to 40935 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,488 DEBUG Processing 397/677 atomic regions from SNP 119070 to 119670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,620 DEBUG Processing 45/600 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,623 DEBUG Processing 2/563 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,653 DEBUG Processing 598/706 atomic regions from SNP 179306 to 179906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,659 DEBUG Processing 136/664 atomic regions from SNP 40635 to 41236 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,716 DEBUG Processing 398/677 atomic regions from SNP 119370 to 119970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,834 DEBUG Processing 46/600 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,843 DEBUG Processing 3/563 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,878 DEBUG Processing 599/706 atomic regions from SNP 179606 to 180206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,881 DEBUG Processing 137/664 atomic regions from SNP 40936 to 41537 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,944 DEBUG Processing 399/677 atomic regions from SNP 119670 to 120270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,035 DEBUG Processing 47/600 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,066 DEBUG Processing 4/563 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,092 DEBUG Processing 138/664 atomic regions from SNP 41237 to 41838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,098 DEBUG Processing 600/706 atomic regions from SNP 179906 to 180506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,164 DEBUG Processing 400/677 atomic regions from SNP 119970 to 120570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,239 DEBUG Processing 48/600 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,289 DEBUG Processing 5/563 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,311 DEBUG Processing 139/664 atomic regions from SNP 41538 to 42139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,319 DEBUG Processing 601/706 atomic regions from SNP 180206 to 180806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,387 DEBUG Processing 401/677 atomic regions from SNP 120270 to 120870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,438 DEBUG Processing 49/600 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,510 DEBUG Processing 6/563 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,534 DEBUG Processing 140/664 atomic regions from SNP 41839 to 42440 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,543 DEBUG Processing 602/706 atomic regions from SNP 180506 to 181106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,626 DEBUG Processing 50/600 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,638 DEBUG Processing 402/677 atomic regions from SNP 120570 to 121170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,734 DEBUG Processing 7/563 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,750 DEBUG Processing 141/664 atomic regions from SNP 42140 to 42741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,762 DEBUG Processing 603/706 atomic regions from SNP 180806 to 181406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,822 DEBUG Processing 51/600 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,897 DEBUG Processing 403/677 atomic regions from SNP 120870 to 121470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,966 DEBUG Processing 142/664 atomic regions from SNP 42441 to 43042 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,971 DEBUG Processing 8/563 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,983 DEBUG Processing 604/706 atomic regions from SNP 181106 to 181706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,024 DEBUG Processing 52/600 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,150 DEBUG Processing 404/677 atomic regions from SNP 121170 to 121770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,179 DEBUG Processing 143/664 atomic regions from SNP 42742 to 43343 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,207 DEBUG Processing 9/563 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,230 DEBUG Processing 605/706 atomic regions from SNP 181406 to 182006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,241 DEBUG Processing 53/600 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,394 DEBUG Processing 144/664 atomic regions from SNP 43043 to 43644 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,405 DEBUG Processing 405/677 atomic regions from SNP 121470 to 122070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,449 DEBUG Processing 10/563 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,472 DEBUG Processing 606/706 atomic regions from SNP 181706 to 182306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,478 DEBUG Processing 54/600 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,612 DEBUG Processing 145/664 atomic regions from SNP 43344 to 43945 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,652 DEBUG Processing 406/677 atomic regions from SNP 121770 to 122370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,684 DEBUG Processing 11/563 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,708 DEBUG Processing 607/706 atomic regions from SNP 182006 to 182606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,717 DEBUG Processing 55/600 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,821 DEBUG Processing 146/664 atomic regions from SNP 43645 to 44246 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,892 DEBUG Processing 407/677 atomic regions from SNP 122070 to 122670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,912 DEBUG Processing 12/563 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,929 DEBUG Processing 56/600 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,931 DEBUG Processing 608/706 atomic regions from SNP 182306 to 182906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,044 DEBUG Processing 147/664 atomic regions from SNP 43946 to 44547 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,125 DEBUG Processing 408/677 atomic regions from SNP 122370 to 122970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,130 DEBUG Processing 13/563 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,141 DEBUG Processing 57/600 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,157 DEBUG Processing 609/706 atomic regions from SNP 182606 to 183206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,288 DEBUG Processing 148/664 atomic regions from SNP 44247 to 44848 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,335 DEBUG Processing 14/563 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,346 DEBUG Processing 409/677 atomic regions from SNP 122670 to 123270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,362 DEBUG Processing 58/600 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,402 DEBUG Processing 610/706 atomic regions from SNP 182906 to 183506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,531 DEBUG Processing 149/664 atomic regions from SNP 44548 to 45149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,545 DEBUG Processing 15/563 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,575 DEBUG Processing 410/677 atomic regions from SNP 122970 to 123570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,579 DEBUG Processing 59/600 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,649 DEBUG Processing 611/706 atomic regions from SNP 183206 to 183806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,750 DEBUG Processing 16/563 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,752 DEBUG Processing 150/664 atomic regions from SNP 44849 to 45450 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,793 DEBUG Processing 60/600 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,804 DEBUG Processing 411/677 atomic regions from SNP 123270 to 123870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,898 DEBUG Processing 612/706 atomic regions from SNP 183506 to 184106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,953 DEBUG Processing 17/563 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,969 DEBUG Processing 151/664 atomic regions from SNP 45150 to 45751 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,005 DEBUG Processing 61/600 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,036 DEBUG Processing 412/677 atomic regions from SNP 123570 to 124170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,141 DEBUG Processing 613/706 atomic regions from SNP 183806 to 184406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,154 DEBUG Processing 18/563 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,180 DEBUG Processing 152/664 atomic regions from SNP 45451 to 46052 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,208 DEBUG Processing 62/600 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,268 DEBUG Processing 413/677 atomic regions from SNP 123870 to 124470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,360 DEBUG Processing 19/563 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,383 DEBUG Processing 614/706 atomic regions from SNP 184106 to 184706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,407 DEBUG Processing 153/664 atomic regions from SNP 45752 to 46353 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,425 DEBUG Processing 63/600 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,491 DEBUG Processing 414/677 atomic regions from SNP 124170 to 124770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,574 DEBUG Processing 20/563 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,634 DEBUG Processing 154/664 atomic regions from SNP 46053 to 46654 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,640 DEBUG Processing 64/600 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,642 DEBUG Processing 615/706 atomic regions from SNP 184406 to 185006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,717 DEBUG Processing 415/677 atomic regions from SNP 124470 to 125070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,790 DEBUG Processing 21/563 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,862 DEBUG Processing 65/600 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,882 DEBUG Processing 155/664 atomic regions from SNP 46354 to 46955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,897 DEBUG Processing 616/706 atomic regions from SNP 184706 to 185306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,941 DEBUG Processing 416/677 atomic regions from SNP 124770 to 125370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,996 DEBUG Processing 22/563 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,072 DEBUG Processing 66/600 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,128 DEBUG Processing 156/664 atomic regions from SNP 46655 to 47256 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,138 DEBUG Processing 617/706 atomic regions from SNP 185006 to 185606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,175 DEBUG Processing 417/677 atomic regions from SNP 125070 to 125670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,202 DEBUG Processing 23/563 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,283 DEBUG Processing 67/600 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,356 DEBUG Processing 157/664 atomic regions from SNP 46956 to 47557 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,368 DEBUG Processing 618/706 atomic regions from SNP 185306 to 185906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,405 DEBUG Processing 418/677 atomic regions from SNP 125370 to 125970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,417 DEBUG Processing 24/563 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,499 DEBUG Processing 68/600 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,592 DEBUG Processing 158/664 atomic regions from SNP 47257 to 47858 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,625 DEBUG Processing 619/706 atomic regions from SNP 185606 to 186206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,634 DEBUG Processing 25/563 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,640 DEBUG Processing 419/677 atomic regions from SNP 125670 to 126270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,707 DEBUG Processing 69/600 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,815 DEBUG Processing 159/664 atomic regions from SNP 47558 to 48159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,847 DEBUG Processing 26/563 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,866 DEBUG Processing 620/706 atomic regions from SNP 185906 to 186506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,870 DEBUG Processing 420/677 atomic regions from SNP 125970 to 126570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,916 DEBUG Processing 70/600 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,036 DEBUG Processing 160/664 atomic regions from SNP 47859 to 48460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,056 DEBUG Processing 27/563 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,097 DEBUG Processing 621/706 atomic regions from SNP 186206 to 186806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,105 DEBUG Processing 421/677 atomic regions from SNP 126270 to 126870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,132 DEBUG Processing 71/600 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,266 DEBUG Processing 161/664 atomic regions from SNP 48160 to 48761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,282 DEBUG Processing 28/563 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,329 DEBUG Processing 622/706 atomic regions from SNP 186506 to 187106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,337 DEBUG Processing 422/677 atomic regions from SNP 126570 to 127170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,350 DEBUG Processing 72/600 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,487 DEBUG Processing 162/664 atomic regions from SNP 48461 to 49062 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,493 DEBUG Processing 29/563 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,555 DEBUG Processing 623/706 atomic regions from SNP 186806 to 187406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,561 DEBUG Processing 73/600 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,564 DEBUG Processing 423/677 atomic regions from SNP 126870 to 127470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,701 DEBUG Processing 30/563 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,708 DEBUG Processing 163/664 atomic regions from SNP 48762 to 49363 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,772 DEBUG Processing 74/600 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,791 DEBUG Processing 624/706 atomic regions from SNP 187106 to 187706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,792 DEBUG Processing 424/677 atomic regions from SNP 127170 to 127770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,910 DEBUG Processing 31/563 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,928 DEBUG Processing 164/664 atomic regions from SNP 49063 to 49664 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,987 DEBUG Processing 75/600 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,016 DEBUG Processing 625/706 atomic regions from SNP 187406 to 188006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,019 DEBUG Processing 425/677 atomic regions from SNP 127470 to 128070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,151 DEBUG Processing 165/664 atomic regions from SNP 49364 to 49965 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,160 DEBUG Processing 32/563 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,203 DEBUG Processing 76/600 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,243 DEBUG Processing 426/677 atomic regions from SNP 127770 to 128370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,245 DEBUG Processing 626/706 atomic regions from SNP 187706 to 188306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,376 DEBUG Processing 166/664 atomic regions from SNP 49665 to 50266 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,409 DEBUG Processing 33/563 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,413 DEBUG Processing 77/600 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,466 DEBUG Processing 427/677 atomic regions from SNP 128070 to 128670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,467 DEBUG Processing 627/706 atomic regions from SNP 188006 to 188606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,596 DEBUG Processing 167/664 atomic regions from SNP 49966 to 50567 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,625 DEBUG Processing 78/600 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,643 DEBUG Processing 34/563 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,686 DEBUG Processing 428/677 atomic regions from SNP 128370 to 128970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,688 DEBUG Processing 628/706 atomic regions from SNP 188306 to 188906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,820 DEBUG Processing 168/664 atomic regions from SNP 50267 to 50868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,840 DEBUG Processing 79/600 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,856 DEBUG Processing 35/563 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,907 DEBUG Processing 429/677 atomic regions from SNP 128670 to 129270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,916 DEBUG Processing 629/706 atomic regions from SNP 188606 to 189206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,046 DEBUG Processing 169/664 atomic regions from SNP 50568 to 51169 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,054 DEBUG Processing 80/600 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,072 DEBUG Processing 36/563 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,142 DEBUG Processing 630/706 atomic regions from SNP 188906 to 189506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,154 DEBUG Processing 430/677 atomic regions from SNP 128970 to 129570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,260 DEBUG Processing 81/600 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,280 DEBUG Processing 37/563 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,288 DEBUG Processing 170/664 atomic regions from SNP 50869 to 51470 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,385 DEBUG Processing 631/706 atomic regions from SNP 189206 to 189806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,390 DEBUG Processing 431/677 atomic regions from SNP 129270 to 129870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,468 DEBUG Processing 82/600 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,490 DEBUG Processing 38/563 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,507 DEBUG Processing 171/664 atomic regions from SNP 51170 to 51771 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,610 DEBUG Processing 432/677 atomic regions from SNP 129570 to 130170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,635 DEBUG Processing 632/706 atomic regions from SNP 189506 to 190106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,678 DEBUG Processing 83/600 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,693 DEBUG Processing 39/563 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,724 DEBUG Processing 172/664 atomic regions from SNP 51471 to 52072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,835 DEBUG Processing 433/677 atomic regions from SNP 129870 to 130470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,861 DEBUG Processing 633/706 atomic regions from SNP 189806 to 190406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,889 DEBUG Processing 84/600 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,902 DEBUG Processing 40/563 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,942 DEBUG Processing 173/664 atomic regions from SNP 51772 to 52373 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,069 DEBUG Processing 434/677 atomic regions from SNP 130170 to 130770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,094 DEBUG Processing 634/706 atomic regions from SNP 190106 to 190706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,108 DEBUG Processing 85/600 atomic regions from SNP 25284 to 25885 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,118 DEBUG Processing 41/563 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,169 DEBUG Processing 174/664 atomic regions from SNP 52073 to 52674 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,305 DEBUG Processing 435/677 atomic regions from SNP 130470 to 131070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,330 DEBUG Processing 635/706 atomic regions from SNP 190406 to 191006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,331 DEBUG Processing 86/600 atomic regions from SNP 25585 to 26186 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,337 DEBUG Processing 42/563 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,391 DEBUG Processing 175/664 atomic regions from SNP 52374 to 52975 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,535 DEBUG Processing 436/677 atomic regions from SNP 130770 to 131370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,549 DEBUG Processing 87/600 atomic regions from SNP 25886 to 26487 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,553 DEBUG Processing 43/563 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,563 DEBUG Processing 636/706 atomic regions from SNP 190706 to 191306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,614 DEBUG Processing 176/664 atomic regions from SNP 52675 to 53276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,767 DEBUG Processing 88/600 atomic regions from SNP 26187 to 26788 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,771 DEBUG Processing 437/677 atomic regions from SNP 131070 to 131670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,793 DEBUG Processing 44/563 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,800 DEBUG Processing 637/706 atomic regions from SNP 191006 to 191606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,837 DEBUG Processing 177/664 atomic regions from SNP 52976 to 53577 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,997 DEBUG Processing 89/600 atomic regions from SNP 26488 to 27089 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,005 DEBUG Processing 438/677 atomic regions from SNP 131370 to 131970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,029 DEBUG Processing 638/706 atomic regions from SNP 191306 to 191906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,033 DEBUG Processing 45/563 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,061 DEBUG Processing 178/664 atomic regions from SNP 53277 to 53878 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,208 DEBUG Processing 90/600 atomic regions from SNP 26789 to 27390 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,236 DEBUG Processing 439/677 atomic regions from SNP 131670 to 132270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,259 DEBUG Processing 639/706 atomic regions from SNP 191606 to 192206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,275 DEBUG Processing 46/563 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,287 DEBUG Processing 179/664 atomic regions from SNP 53578 to 54179 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,410 DEBUG Processing 91/600 atomic regions from SNP 27090 to 27691 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,463 DEBUG Processing 440/677 atomic regions from SNP 131970 to 132570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,488 DEBUG Processing 640/706 atomic regions from SNP 191906 to 192506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,507 DEBUG Processing 47/563 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,513 DEBUG Processing 180/664 atomic regions from SNP 53879 to 54480 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,613 DEBUG Processing 92/600 atomic regions from SNP 27391 to 27992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,693 DEBUG Processing 441/677 atomic regions from SNP 132270 to 132870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,714 DEBUG Processing 641/706 atomic regions from SNP 192206 to 192806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,741 DEBUG Processing 48/563 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,748 DEBUG Processing 181/664 atomic regions from SNP 54180 to 54781 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,820 DEBUG Processing 93/600 atomic regions from SNP 27692 to 28293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,915 DEBUG Processing 442/677 atomic regions from SNP 132570 to 133170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,941 DEBUG Processing 642/706 atomic regions from SNP 192506 to 193106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,969 DEBUG Processing 182/664 atomic regions from SNP 54481 to 55082 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,977 DEBUG Processing 49/563 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,029 DEBUG Processing 94/600 atomic regions from SNP 27993 to 28594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,134 DEBUG Processing 443/677 atomic regions from SNP 132870 to 133470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,165 DEBUG Processing 643/706 atomic regions from SNP 192806 to 193406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,190 DEBUG Processing 183/664 atomic regions from SNP 54782 to 55383 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,202 DEBUG Processing 50/563 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,240 DEBUG Processing 95/600 atomic regions from SNP 28294 to 28895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,355 DEBUG Processing 444/677 atomic regions from SNP 133170 to 133770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,385 DEBUG Processing 644/706 atomic regions from SNP 193106 to 193706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,410 DEBUG Processing 184/664 atomic regions from SNP 55083 to 55684 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,414 DEBUG Processing 51/563 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,453 DEBUG Processing 96/600 atomic regions from SNP 28595 to 29196 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,593 DEBUG Processing 445/677 atomic regions from SNP 133470 to 134070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,608 DEBUG Processing 645/706 atomic regions from SNP 193406 to 194006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,634 DEBUG Processing 185/664 atomic regions from SNP 55384 to 55985 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,634 DEBUG Processing 52/563 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,666 DEBUG Processing 97/600 atomic regions from SNP 28896 to 29497 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,832 DEBUG Processing 646/706 atomic regions from SNP 193706 to 194306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,842 DEBUG Processing 53/563 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,849 DEBUG Processing 446/677 atomic regions from SNP 133770 to 134370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,856 DEBUG Processing 186/664 atomic regions from SNP 55685 to 56286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,879 DEBUG Processing 98/600 atomic regions from SNP 29197 to 29798 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,053 DEBUG Processing 54/563 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,057 DEBUG Processing 647/706 atomic regions from SNP 194006 to 194606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,073 DEBUG Processing 447/677 atomic regions from SNP 134070 to 134670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,079 DEBUG Processing 187/664 atomic regions from SNP 55986 to 56587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,089 DEBUG Processing 99/600 atomic regions from SNP 29498 to 30099 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,260 DEBUG Processing 55/563 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,282 DEBUG Processing 648/706 atomic regions from SNP 194306 to 194906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,297 DEBUG Processing 448/677 atomic regions from SNP 134370 to 134970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,301 DEBUG Processing 100/600 atomic regions from SNP 29799 to 30400 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,301 DEBUG Processing 188/664 atomic regions from SNP 56287 to 56888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,473 DEBUG Processing 56/563 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,510 DEBUG Processing 649/706 atomic regions from SNP 194606 to 195206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,516 DEBUG Processing 101/600 atomic regions from SNP 30100 to 30701 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,526 DEBUG Processing 449/677 atomic regions from SNP 134670 to 135270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,526 DEBUG Processing 189/664 atomic regions from SNP 56588 to 57189 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,682 DEBUG Processing 57/563 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,735 DEBUG Processing 102/600 atomic regions from SNP 30401 to 31002 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,746 DEBUG Processing 650/706 atomic regions from SNP 194906 to 195506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,758 DEBUG Processing 190/664 atomic regions from SNP 56889 to 57490 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,782 DEBUG Processing 450/677 atomic regions from SNP 134970 to 135570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,887 DEBUG Processing 58/563 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,950 DEBUG Processing 103/600 atomic regions from SNP 30702 to 31303 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,977 DEBUG Processing 651/706 atomic regions from SNP 195206 to 195806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,985 DEBUG Processing 191/664 atomic regions from SNP 57190 to 57791 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,046 DEBUG Processing 451/677 atomic regions from SNP 135270 to 135870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,085 DEBUG Processing 59/563 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,162 DEBUG Processing 104/600 atomic regions from SNP 31003 to 31604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,208 DEBUG Processing 652/706 atomic regions from SNP 195506 to 196106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,214 DEBUG Processing 192/664 atomic regions from SNP 57491 to 58092 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,291 DEBUG Processing 452/677 atomic regions from SNP 135570 to 136170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,308 DEBUG Processing 60/563 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,372 DEBUG Processing 105/600 atomic regions from SNP 31304 to 31905 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,433 DEBUG Processing 653/706 atomic regions from SNP 195806 to 196406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,433 DEBUG Processing 193/664 atomic regions from SNP 57792 to 58393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,515 DEBUG Processing 453/677 atomic regions from SNP 135870 to 136470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,531 DEBUG Processing 61/563 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,580 DEBUG Processing 106/600 atomic regions from SNP 31605 to 32206 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,652 DEBUG Processing 194/664 atomic regions from SNP 58093 to 58694 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,653 DEBUG Processing 654/706 atomic regions from SNP 196106 to 196706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,736 DEBUG Processing 454/677 atomic regions from SNP 136170 to 136770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,762 DEBUG Processing 62/563 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,786 DEBUG Processing 107/600 atomic regions from SNP 31906 to 32507 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,872 DEBUG Processing 195/664 atomic regions from SNP 58394 to 58995 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,878 DEBUG Processing 655/706 atomic regions from SNP 196406 to 197006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,951 DEBUG Processing 455/677 atomic regions from SNP 136470 to 137070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,991 DEBUG Processing 63/563 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,996 DEBUG Processing 108/600 atomic regions from SNP 32207 to 32808 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,100 DEBUG Processing 196/664 atomic regions from SNP 58695 to 59296 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,105 DEBUG Processing 656/706 atomic regions from SNP 196706 to 197306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,173 DEBUG Processing 456/677 atomic regions from SNP 136770 to 137370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,202 DEBUG Processing 109/600 atomic regions from SNP 32508 to 33109 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,226 DEBUG Processing 64/563 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,315 DEBUG Processing 197/664 atomic regions from SNP 58996 to 59597 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,324 DEBUG Processing 657/706 atomic regions from SNP 197006 to 197606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,390 DEBUG Processing 457/677 atomic regions from SNP 137070 to 137670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,412 DEBUG Processing 110/600 atomic regions from SNP 32809 to 33410 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,444 DEBUG Processing 65/563 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,531 DEBUG Processing 198/664 atomic regions from SNP 59297 to 59898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,548 DEBUG Processing 658/706 atomic regions from SNP 197306 to 197906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,608 DEBUG Processing 458/677 atomic regions from SNP 137370 to 137970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,622 DEBUG Processing 111/600 atomic regions from SNP 33110 to 33711 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,666 DEBUG Processing 66/563 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,748 DEBUG Processing 199/664 atomic regions from SNP 59598 to 60199 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,770 DEBUG Processing 659/706 atomic regions from SNP 197606 to 198206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,829 DEBUG Processing 112/600 atomic regions from SNP 33411 to 34012 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,840 DEBUG Processing 459/677 atomic regions from SNP 137670 to 138270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,914 DEBUG Processing 67/563 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,962 DEBUG Processing 200/664 atomic regions from SNP 59899 to 60500 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,994 DEBUG Processing 660/706 atomic regions from SNP 197906 to 198506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,027 DEBUG Processing 113/600 atomic regions from SNP 33712 to 34313 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,054 DEBUG Processing 460/677 atomic regions from SNP 137970 to 138570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,141 DEBUG Processing 68/563 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,186 DEBUG Processing 201/664 atomic regions from SNP 60200 to 60801 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,219 DEBUG Processing 661/706 atomic regions from SNP 198206 to 198806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,236 DEBUG Processing 114/600 atomic regions from SNP 34013 to 34614 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,268 DEBUG Processing 461/677 atomic regions from SNP 138270 to 138870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,345 DEBUG Processing 69/563 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,408 DEBUG Processing 202/664 atomic regions from SNP 60501 to 61102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,446 DEBUG Processing 662/706 atomic regions from SNP 198506 to 199106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,450 DEBUG Processing 115/600 atomic regions from SNP 34314 to 34915 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,492 DEBUG Processing 462/677 atomic regions from SNP 138570 to 139170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,545 DEBUG Processing 70/563 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,632 DEBUG Processing 203/664 atomic regions from SNP 60802 to 61403 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,667 DEBUG Processing 116/600 atomic regions from SNP 34615 to 35216 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,679 DEBUG Processing 663/706 atomic regions from SNP 198806 to 199406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,747 DEBUG Processing 463/677 atomic regions from SNP 138870 to 139470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,751 DEBUG Processing 71/563 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,853 DEBUG Processing 204/664 atomic regions from SNP 61103 to 61704 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,887 DEBUG Processing 117/600 atomic regions from SNP 34916 to 35517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,913 DEBUG Processing 664/706 atomic regions from SNP 199106 to 199706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,965 DEBUG Processing 72/563 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,977 DEBUG Processing 464/677 atomic regions from SNP 139170 to 139770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,076 DEBUG Processing 205/664 atomic regions from SNP 61404 to 62005 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,103 DEBUG Processing 118/600 atomic regions from SNP 35217 to 35818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,139 DEBUG Processing 665/706 atomic regions from SNP 199406 to 200006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,174 DEBUG Processing 73/563 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,193 DEBUG Processing 465/677 atomic regions from SNP 139470 to 140070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,302 DEBUG Processing 206/664 atomic regions from SNP 61705 to 62306 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,324 DEBUG Processing 119/600 atomic regions from SNP 35518 to 36119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,388 DEBUG Processing 74/563 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,395 DEBUG Processing 666/706 atomic regions from SNP 199706 to 200306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,418 DEBUG Processing 466/677 atomic regions from SNP 139770 to 140370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,517 DEBUG Processing 207/664 atomic regions from SNP 62006 to 62607 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,533 DEBUG Processing 120/600 atomic regions from SNP 35819 to 36420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,598 DEBUG Processing 75/563 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,641 DEBUG Processing 467/677 atomic regions from SNP 140070 to 140670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,658 DEBUG Processing 667/706 atomic regions from SNP 200006 to 200606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,742 DEBUG Processing 208/664 atomic regions from SNP 62307 to 62908 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,743 DEBUG Processing 121/600 atomic regions from SNP 36120 to 36721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,810 DEBUG Processing 76/563 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,879 DEBUG Processing 468/677 atomic regions from SNP 140370 to 140970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,921 DEBUG Processing 668/706 atomic regions from SNP 200306 to 200906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,951 DEBUG Processing 122/600 atomic regions from SNP 36421 to 37022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,960 DEBUG Processing 209/664 atomic regions from SNP 62608 to 63209 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,016 DEBUG Processing 77/563 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,106 DEBUG Processing 469/677 atomic regions from SNP 140670 to 141270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,167 DEBUG Processing 123/600 atomic regions from SNP 36722 to 37323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,176 DEBUG Processing 669/706 atomic regions from SNP 200606 to 201206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,184 DEBUG Processing 210/664 atomic regions from SNP 62909 to 63510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,222 DEBUG Processing 78/563 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,335 DEBUG Processing 470/677 atomic regions from SNP 140970 to 141570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,383 DEBUG Processing 124/600 atomic regions from SNP 37023 to 37624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,409 DEBUG Processing 211/664 atomic regions from SNP 63210 to 63811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,430 DEBUG Processing 79/563 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,437 DEBUG Processing 670/706 atomic regions from SNP 200906 to 201506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,561 DEBUG Processing 471/677 atomic regions from SNP 141270 to 141870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,596 DEBUG Processing 125/600 atomic regions from SNP 37324 to 37924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,633 DEBUG Processing 212/664 atomic regions from SNP 63511 to 64112 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,651 DEBUG Processing 80/563 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,699 DEBUG Processing 671/706 atomic regions from SNP 201206 to 201806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,787 DEBUG Processing 472/677 atomic regions from SNP 141570 to 142170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,801 DEBUG Processing 126/600 atomic regions from SNP 37624 to 38224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,856 DEBUG Processing 213/664 atomic regions from SNP 63812 to 64413 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,861 DEBUG Processing 81/563 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,958 DEBUG Processing 672/706 atomic regions from SNP 201506 to 202106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,011 DEBUG Processing 127/600 atomic regions from SNP 37924 to 38524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,018 DEBUG Processing 473/677 atomic regions from SNP 141870 to 142470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,065 DEBUG Processing 82/563 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,077 DEBUG Processing 214/664 atomic regions from SNP 64113 to 64714 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,213 DEBUG Processing 673/706 atomic regions from SNP 201806 to 202406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,222 DEBUG Processing 128/600 atomic regions from SNP 38224 to 38824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,247 DEBUG Processing 474/677 atomic regions from SNP 142170 to 142770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,293 DEBUG Processing 83/563 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,295 DEBUG Processing 215/664 atomic regions from SNP 64414 to 65015 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,438 DEBUG Processing 129/600 atomic regions from SNP 38524 to 39124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,464 DEBUG Processing 674/706 atomic regions from SNP 202106 to 202706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,479 DEBUG Processing 475/677 atomic regions from SNP 142470 to 143070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,512 DEBUG Processing 216/664 atomic regions from SNP 64715 to 65316 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,536 DEBUG Processing 84/563 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,654 DEBUG Processing 130/600 atomic regions from SNP 38824 to 39424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,728 DEBUG Processing 476/677 atomic regions from SNP 142770 to 143370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,740 DEBUG Processing 217/664 atomic regions from SNP 65016 to 65617 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,740 DEBUG Processing 675/706 atomic regions from SNP 202406 to 203006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,767 DEBUG Processing 85/563 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,867 DEBUG Processing 131/600 atomic regions from SNP 39124 to 39724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,965 DEBUG Processing 218/664 atomic regions from SNP 65317 to 65918 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,966 DEBUG Processing 477/677 atomic regions from SNP 143070 to 143670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,007 DEBUG Processing 676/706 atomic regions from SNP 202706 to 203306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,009 DEBUG Processing 86/563 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,073 DEBUG Processing 132/600 atomic regions from SNP 39424 to 40024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,182 DEBUG Processing 219/664 atomic regions from SNP 65618 to 66219 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,187 DEBUG Processing 478/677 atomic regions from SNP 143370 to 143970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,233 DEBUG Processing 87/563 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,256 DEBUG Processing 677/706 atomic regions from SNP 203006 to 203606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,279 DEBUG Processing 133/600 atomic regions from SNP 39724 to 40324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,399 DEBUG Processing 220/664 atomic regions from SNP 65919 to 66520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,418 DEBUG Processing 479/677 atomic regions from SNP 143670 to 144270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,461 DEBUG Processing 88/563 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,485 DEBUG Processing 134/600 atomic regions from SNP 40024 to 40624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,516 DEBUG Processing 678/706 atomic regions from SNP 203306 to 203906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,617 DEBUG Processing 221/664 atomic regions from SNP 66220 to 66821 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,635 DEBUG Processing 480/677 atomic regions from SNP 143970 to 144570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,691 DEBUG Processing 135/600 atomic regions from SNP 40324 to 40924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,701 DEBUG Processing 89/563 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,750 DEBUG Processing 679/706 atomic regions from SNP 203606 to 204206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,836 DEBUG Processing 222/664 atomic regions from SNP 66521 to 67122 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,853 DEBUG Processing 481/677 atomic regions from SNP 144270 to 144870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,897 DEBUG Processing 136/600 atomic regions from SNP 40624 to 41224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,936 DEBUG Processing 90/563 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,004 DEBUG Processing 680/706 atomic regions from SNP 203906 to 204506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,058 DEBUG Processing 223/664 atomic regions from SNP 66822 to 67423 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,076 DEBUG Processing 482/677 atomic regions from SNP 144570 to 145170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,109 DEBUG Processing 137/600 atomic regions from SNP 40924 to 41524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,176 DEBUG Processing 91/563 atomic regions from SNP 27090 to 27690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,227 DEBUG Processing 681/706 atomic regions from SNP 204206 to 204806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,277 DEBUG Processing 224/664 atomic regions from SNP 67123 to 67724 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,301 DEBUG Processing 483/677 atomic regions from SNP 144870 to 145470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,319 DEBUG Processing 138/600 atomic regions from SNP 41224 to 41824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,414 DEBUG Processing 92/563 atomic regions from SNP 27390 to 27990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,487 DEBUG Processing 682/706 atomic regions from SNP 204506 to 205106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,508 DEBUG Processing 225/664 atomic regions from SNP 67424 to 68025 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,535 DEBUG Processing 484/677 atomic regions from SNP 145170 to 145770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,540 DEBUG Processing 139/600 atomic regions from SNP 41524 to 42124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,642 DEBUG Processing 93/563 atomic regions from SNP 27690 to 28290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,732 DEBUG Processing 226/664 atomic regions from SNP 67725 to 68326 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,741 DEBUG Processing 683/706 atomic regions from SNP 204806 to 205406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,759 DEBUG Processing 140/600 atomic regions from SNP 41824 to 42424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,766 DEBUG Processing 485/677 atomic regions from SNP 145470 to 146070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,869 DEBUG Processing 94/563 atomic regions from SNP 27990 to 28590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,958 DEBUG Processing 227/664 atomic regions from SNP 68026 to 68627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,982 DEBUG Processing 141/600 atomic regions from SNP 42124 to 42724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,995 DEBUG Processing 684/706 atomic regions from SNP 205106 to 205706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,003 DEBUG Processing 486/677 atomic regions from SNP 145770 to 146370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,094 DEBUG Processing 95/563 atomic regions from SNP 28290 to 28890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,174 DEBUG Processing 228/664 atomic regions from SNP 68327 to 68928 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,210 DEBUG Processing 142/600 atomic regions from SNP 42424 to 43024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,237 DEBUG Processing 487/677 atomic regions from SNP 146070 to 146670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,243 DEBUG Processing 685/706 atomic regions from SNP 205406 to 206006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,312 DEBUG Processing 96/563 atomic regions from SNP 28590 to 29190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,389 DEBUG Processing 229/664 atomic regions from SNP 68628 to 69229 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,439 DEBUG Processing 143/600 atomic regions from SNP 42724 to 43324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,460 DEBUG Processing 488/677 atomic regions from SNP 146370 to 146970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,484 DEBUG Processing 686/706 atomic regions from SNP 205706 to 206306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,522 DEBUG Processing 97/563 atomic regions from SNP 28890 to 29490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,597 DEBUG Processing 230/664 atomic regions from SNP 68929 to 69530 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,639 DEBUG Processing 144/600 atomic regions from SNP 43024 to 43624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,679 DEBUG Processing 489/677 atomic regions from SNP 146670 to 147270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,717 DEBUG Processing 687/706 atomic regions from SNP 206006 to 206606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,730 DEBUG Processing 98/563 atomic regions from SNP 29190 to 29790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,807 DEBUG Processing 231/664 atomic regions from SNP 69230 to 69831 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,837 DEBUG Processing 145/600 atomic regions from SNP 43324 to 43924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,889 DEBUG Processing 490/677 atomic regions from SNP 146970 to 147570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,941 DEBUG Processing 688/706 atomic regions from SNP 206306 to 206906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,945 DEBUG Processing 99/563 atomic regions from SNP 29490 to 30090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,028 DEBUG Processing 232/664 atomic regions from SNP 69531 to 70132 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,042 DEBUG Processing 146/600 atomic regions from SNP 43624 to 44224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,102 DEBUG Processing 491/677 atomic regions from SNP 147270 to 147870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,157 DEBUG Processing 100/563 atomic regions from SNP 29790 to 30390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,164 DEBUG Processing 689/706 atomic regions from SNP 206606 to 207206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,246 DEBUG Processing 147/600 atomic regions from SNP 43924 to 44524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,249 DEBUG Processing 233/664 atomic regions from SNP 69832 to 70433 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,321 DEBUG Processing 492/677 atomic regions from SNP 147570 to 148170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,365 DEBUG Processing 101/563 atomic regions from SNP 30090 to 30690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,385 DEBUG Processing 690/706 atomic regions from SNP 206906 to 207506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,454 DEBUG Processing 148/600 atomic regions from SNP 44224 to 44824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,466 DEBUG Processing 234/664 atomic regions from SNP 70133 to 70734 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,540 DEBUG Processing 493/677 atomic regions from SNP 147870 to 148470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,564 DEBUG Processing 102/563 atomic regions from SNP 30390 to 30990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,611 DEBUG Processing 691/706 atomic regions from SNP 207206 to 207806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,662 DEBUG Processing 149/600 atomic regions from SNP 44524 to 45124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,682 DEBUG Processing 235/664 atomic regions from SNP 70434 to 71035 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,753 DEBUG Processing 494/677 atomic regions from SNP 148170 to 148770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,786 DEBUG Processing 103/563 atomic regions from SNP 30690 to 31290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,843 DEBUG Processing 692/706 atomic regions from SNP 207506 to 208106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,871 DEBUG Processing 150/600 atomic regions from SNP 44824 to 45424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,901 DEBUG Processing 236/664 atomic regions from SNP 70735 to 71336 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,985 DEBUG Processing 495/677 atomic regions from SNP 148470 to 149070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,030 DEBUG Processing 104/563 atomic regions from SNP 30990 to 31590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,074 DEBUG Processing 693/706 atomic regions from SNP 207806 to 208406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,084 DEBUG Processing 151/600 atomic regions from SNP 45124 to 45724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,121 DEBUG Processing 237/664 atomic regions from SNP 71036 to 71637 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,202 DEBUG Processing 496/677 atomic regions from SNP 148770 to 149370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,263 DEBUG Processing 105/563 atomic regions from SNP 31290 to 31890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,294 DEBUG Processing 152/600 atomic regions from SNP 45424 to 46024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,297 DEBUG Processing 694/706 atomic regions from SNP 208106 to 208706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,339 DEBUG Processing 238/664 atomic regions from SNP 71337 to 71938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,416 DEBUG Processing 497/677 atomic regions from SNP 149070 to 149670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,469 DEBUG Processing 106/563 atomic regions from SNP 31590 to 32190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,502 DEBUG Processing 153/600 atomic regions from SNP 45724 to 46324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,528 DEBUG Processing 695/706 atomic regions from SNP 208406 to 209006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,558 DEBUG Processing 239/664 atomic regions from SNP 71638 to 72239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,640 DEBUG Processing 498/677 atomic regions from SNP 149370 to 149970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,676 DEBUG Processing 107/563 atomic regions from SNP 31890 to 32490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,705 DEBUG Processing 154/600 atomic regions from SNP 46024 to 46624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,771 DEBUG Processing 696/706 atomic regions from SNP 208706 to 209306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,780 DEBUG Processing 240/664 atomic regions from SNP 71939 to 72540 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,863 DEBUG Processing 499/677 atomic regions from SNP 149670 to 150270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,904 DEBUG Processing 108/563 atomic regions from SNP 32190 to 32790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,907 DEBUG Processing 155/600 atomic regions from SNP 46324 to 46924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,999 DEBUG Processing 241/664 atomic regions from SNP 72240 to 72841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,014 DEBUG Processing 697/706 atomic regions from SNP 209006 to 209606 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,090 DEBUG Processing 500/677 atomic regions from SNP 149970 to 150570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,111 DEBUG Processing 156/600 atomic regions from SNP 46624 to 47224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,141 DEBUG Processing 109/563 atomic regions from SNP 32490 to 33090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,212 DEBUG Processing 242/664 atomic regions from SNP 72541 to 73142 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,268 DEBUG Processing 698/706 atomic regions from SNP 209306 to 209906 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,319 DEBUG Processing 501/677 atomic regions from SNP 150270 to 150870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,319 DEBUG Processing 157/600 atomic regions from SNP 46924 to 47524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,347 DEBUG Processing 110/563 atomic regions from SNP 32790 to 33390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,422 DEBUG Processing 243/664 atomic regions from SNP 72842 to 73443 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,524 DEBUG Processing 699/706 atomic regions from SNP 209606 to 210206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,530 DEBUG Processing 158/600 atomic regions from SNP 47224 to 47824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,548 DEBUG Processing 502/677 atomic regions from SNP 150570 to 151170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,555 DEBUG Processing 111/563 atomic regions from SNP 33090 to 33690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,631 DEBUG Processing 244/664 atomic regions from SNP 73143 to 73744 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,752 DEBUG Processing 159/600 atomic regions from SNP 47524 to 48124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,773 DEBUG Processing 112/563 atomic regions from SNP 33390 to 33990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,775 DEBUG Processing 503/677 atomic regions from SNP 150870 to 151470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,783 DEBUG Processing 700/706 atomic regions from SNP 209906 to 210506 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,855 DEBUG Processing 245/664 atomic regions from SNP 73444 to 74045 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,958 DEBUG Processing 160/600 atomic regions from SNP 47824 to 48424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,992 DEBUG Processing 113/563 atomic regions from SNP 33690 to 34290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,022 DEBUG Processing 504/677 atomic regions from SNP 151170 to 151770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,036 DEBUG Processing 701/706 atomic regions from SNP 210206 to 210806 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,071 DEBUG Processing 246/664 atomic regions from SNP 73745 to 74346 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,160 DEBUG Processing 161/600 atomic regions from SNP 48124 to 48724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,206 DEBUG Processing 114/563 atomic regions from SNP 33990 to 34590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,251 DEBUG Processing 505/677 atomic regions from SNP 151470 to 152070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,289 DEBUG Processing 702/706 atomic regions from SNP 210506 to 211106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,291 DEBUG Processing 247/664 atomic regions from SNP 74046 to 74647 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,361 DEBUG Processing 162/600 atomic regions from SNP 48424 to 49024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,418 DEBUG Processing 115/563 atomic regions from SNP 34290 to 34890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,483 DEBUG Processing 506/677 atomic regions from SNP 151770 to 152370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,516 DEBUG Processing 248/664 atomic regions from SNP 74347 to 74948 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,530 DEBUG Processing 703/706 atomic regions from SNP 210806 to 211406 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,562 DEBUG Processing 163/600 atomic regions from SNP 48724 to 49324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,622 DEBUG Processing 116/563 atomic regions from SNP 34590 to 35190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,742 DEBUG Processing 507/677 atomic regions from SNP 152070 to 152670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,748 DEBUG Processing 249/664 atomic regions from SNP 74648 to 75249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,772 DEBUG Processing 164/600 atomic regions from SNP 49024 to 49624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,782 DEBUG Processing 704/706 atomic regions from SNP 211106 to 211706 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,822 DEBUG Processing 117/563 atomic regions from SNP 34890 to 35490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,973 DEBUG Processing 250/664 atomic regions from SNP 74949 to 75550 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,986 DEBUG Processing 508/677 atomic regions from SNP 152370 to 152970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,990 DEBUG Processing 165/600 atomic regions from SNP 49324 to 49924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,023 DEBUG Processing 705/706 atomic regions from SNP 211406 to 212006 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,057 DEBUG Processing 118/563 atomic regions from SNP 35190 to 35790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,200 DEBUG Processing 251/664 atomic regions from SNP 75250 to 75851 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,228 DEBUG Processing 509/677 atomic regions from SNP 152670 to 153270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,233 DEBUG Processing 166/600 atomic regions from SNP 49624 to 50224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,260 DEBUG Processing 706/706 atomic regions from SNP 211706 to 212306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,310 DEBUG Processing 119/563 atomic regions from SNP 35490 to 36090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,405 DEBUG Unique SNPs positions in subchromosome 1: 212307 2025-01-31 09:56:21,425 DEBUG Processing 252/664 atomic regions from SNP 75551 to 76152 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,467 DEBUG Processing 510/677 atomic regions from SNP 152970 to 153570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,479 DEBUG Processing 167/600 atomic regions from SNP 49924 to 50524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,549 DEBUG Processing 120/563 atomic regions from SNP 35790 to 36390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,636 DEBUG Processing 253/664 atomic regions from SNP 75852 to 76453 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,686 DEBUG Processing 168/600 atomic regions from SNP 50224 to 50824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,701 DEBUG Processing 511/677 atomic regions from SNP 153270 to 153870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,785 DEBUG Processing 121/563 atomic regions from SNP 36090 to 36690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,862 DEBUG Processing 254/664 atomic regions from SNP 76153 to 76754 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,890 DEBUG Processing 169/600 atomic regions from SNP 50524 to 51124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,938 DEBUG Processing 512/677 atomic regions from SNP 153570 to 154170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,994 DEBUG Processing 122/563 atomic regions from SNP 36390 to 36990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,084 DEBUG Processing 255/664 atomic regions from SNP 76454 to 77055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,099 DEBUG Processing 170/600 atomic regions from SNP 50824 to 51424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,178 DEBUG Processing 513/677 atomic regions from SNP 153870 to 154470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,195 DEBUG Processing 123/563 atomic regions from SNP 36690 to 37290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,312 DEBUG Processing 256/664 atomic regions from SNP 76755 to 77356 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,313 DEBUG Processing 171/600 atomic regions from SNP 51124 to 51724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,400 DEBUG Processing 124/563 atomic regions from SNP 36990 to 37590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,429 DEBUG Processing 514/677 atomic regions from SNP 154170 to 154770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,523 DEBUG Processing 172/600 atomic regions from SNP 51424 to 52024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,534 DEBUG Processing 257/664 atomic regions from SNP 77056 to 77657 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,608 DEBUG Processing 125/563 atomic regions from SNP 37290 to 37890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,679 DEBUG Processing 515/677 atomic regions from SNP 154470 to 155070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,731 DEBUG Processing 173/600 atomic regions from SNP 51724 to 52324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,755 DEBUG Processing 258/664 atomic regions from SNP 77357 to 77958 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,817 DEBUG Processing 126/563 atomic regions from SNP 37590 to 38190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,907 DEBUG Processing 516/677 atomic regions from SNP 154770 to 155370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,942 DEBUG Processing 174/600 atomic regions from SNP 52024 to 52624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,978 DEBUG Processing 259/664 atomic regions from SNP 77658 to 78259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,030 DEBUG Processing 127/563 atomic regions from SNP 37890 to 38490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,130 DEBUG Processing 517/677 atomic regions from SNP 155070 to 155670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,149 DEBUG Processing 175/600 atomic regions from SNP 52324 to 52924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,201 DEBUG Processing 260/664 atomic regions from SNP 77959 to 78560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,245 DEBUG Processing 128/563 atomic regions from SNP 38190 to 38790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,357 DEBUG Processing 176/600 atomic regions from SNP 52624 to 53224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,368 DEBUG Processing 518/677 atomic regions from SNP 155370 to 155970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,446 DEBUG Processing 261/664 atomic regions from SNP 78260 to 78861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,456 DEBUG Processing 129/563 atomic regions from SNP 38490 to 39090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,579 DEBUG Processing 177/600 atomic regions from SNP 52924 to 53524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,614 DEBUG Processing 519/677 atomic regions from SNP 155670 to 156270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,666 DEBUG Processing 130/563 atomic regions from SNP 38790 to 39390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,696 DEBUG Processing 262/664 atomic regions from SNP 78561 to 79162 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,787 DEBUG Processing 178/600 atomic regions from SNP 53224 to 53824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,839 DEBUG Processing 520/677 atomic regions from SNP 155970 to 156570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,874 DEBUG Processing 131/563 atomic regions from SNP 39090 to 39690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,928 DEBUG Processing 263/664 atomic regions from SNP 78862 to 79463 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,997 DEBUG Processing 179/600 atomic regions from SNP 53524 to 54124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,063 DEBUG Processing 521/677 atomic regions from SNP 156270 to 156870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,083 DEBUG Processing 132/563 atomic regions from SNP 39390 to 39990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,146 DEBUG Processing 264/664 atomic regions from SNP 79163 to 79764 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,208 DEBUG Processing 180/600 atomic regions from SNP 53824 to 54424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,289 DEBUG Processing 522/677 atomic regions from SNP 156570 to 157170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,294 DEBUG Processing 133/563 atomic regions from SNP 39690 to 40290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,367 DEBUG Processing 265/664 atomic regions from SNP 79464 to 80065 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,416 DEBUG Processing 181/600 atomic regions from SNP 54124 to 54724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,506 DEBUG Processing 134/563 atomic regions from SNP 39990 to 40590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,515 DEBUG Processing 523/677 atomic regions from SNP 156870 to 157470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,607 DEBUG Processing 266/664 atomic regions from SNP 79765 to 80366 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,629 DEBUG Processing 182/600 atomic regions from SNP 54424 to 55024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,717 DEBUG Processing 135/563 atomic regions from SNP 40290 to 40890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,736 DEBUG Processing 524/677 atomic regions from SNP 157170 to 157770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,831 DEBUG Processing 267/664 atomic regions from SNP 80066 to 80667 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,865 DEBUG Processing 183/600 atomic regions from SNP 54724 to 55324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,928 DEBUG Processing 136/563 atomic regions from SNP 40590 to 41190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,961 DEBUG Processing 525/677 atomic regions from SNP 157470 to 158070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,055 DEBUG Processing 268/664 atomic regions from SNP 80367 to 80968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,089 DEBUG Processing 184/600 atomic regions from SNP 55024 to 55624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,139 DEBUG Processing 137/563 atomic regions from SNP 40890 to 41490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,187 DEBUG Processing 526/677 atomic regions from SNP 157770 to 158370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,292 DEBUG Processing 269/664 atomic regions from SNP 80668 to 81269 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,315 DEBUG Processing 185/600 atomic regions from SNP 55324 to 55924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,349 DEBUG Processing 138/563 atomic regions from SNP 41190 to 41790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,421 DEBUG Processing 527/677 atomic regions from SNP 158070 to 158670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,519 DEBUG Processing 270/664 atomic regions from SNP 80969 to 81570 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,532 DEBUG Processing 186/600 atomic regions from SNP 55624 to 56224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,562 DEBUG Processing 139/563 atomic regions from SNP 41490 to 42090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,643 DEBUG Processing 528/677 atomic regions from SNP 158370 to 158970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,747 DEBUG Processing 187/600 atomic regions from SNP 55924 to 56524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,747 DEBUG Processing 271/664 atomic regions from SNP 81270 to 81871 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,778 DEBUG Processing 140/563 atomic regions from SNP 41790 to 42390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,866 DEBUG Processing 529/677 atomic regions from SNP 158670 to 159270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,976 DEBUG Processing 272/664 atomic regions from SNP 81571 to 82172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,985 DEBUG Processing 188/600 atomic regions from SNP 56224 to 56824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,997 DEBUG Processing 141/563 atomic regions from SNP 42090 to 42690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,087 DEBUG Processing 530/677 atomic regions from SNP 158970 to 159570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,203 DEBUG Processing 273/664 atomic regions from SNP 81872 to 82473 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,219 DEBUG Processing 142/563 atomic regions from SNP 42390 to 42990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,222 DEBUG Processing 189/600 atomic regions from SNP 56524 to 57124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,314 DEBUG Processing 531/677 atomic regions from SNP 159270 to 159870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,425 DEBUG Processing 274/664 atomic regions from SNP 82173 to 82774 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,436 DEBUG Processing 190/600 atomic regions from SNP 56824 to 57424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,437 DEBUG Processing 143/563 atomic regions from SNP 42690 to 43290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,562 DEBUG Processing 532/677 atomic regions from SNP 159570 to 160170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,647 DEBUG Processing 275/664 atomic regions from SNP 82474 to 83075 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,654 DEBUG Processing 144/563 atomic regions from SNP 42990 to 43590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,655 DEBUG Processing 191/600 atomic regions from SNP 57124 to 57724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,819 DEBUG Processing 533/677 atomic regions from SNP 159870 to 160470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,864 DEBUG Processing 192/600 atomic regions from SNP 57424 to 58024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,866 DEBUG Processing 145/563 atomic regions from SNP 43290 to 43890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,868 DEBUG Processing 276/664 atomic regions from SNP 82775 to 83376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,048 DEBUG Processing 534/677 atomic regions from SNP 160170 to 160770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,084 DEBUG Processing 146/563 atomic regions from SNP 43590 to 44190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,087 DEBUG Processing 193/600 atomic regions from SNP 57724 to 58324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,093 DEBUG Processing 277/664 atomic regions from SNP 83076 to 83677 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,280 DEBUG Processing 535/677 atomic regions from SNP 160470 to 161070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,293 DEBUG Processing 147/563 atomic regions from SNP 43890 to 44490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,311 DEBUG Processing 278/664 atomic regions from SNP 83377 to 83978 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,326 DEBUG Processing 194/600 atomic regions from SNP 58024 to 58624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,504 DEBUG Processing 536/677 atomic regions from SNP 160770 to 161370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,505 DEBUG Processing 148/563 atomic regions from SNP 44190 to 44790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,552 DEBUG Processing 279/664 atomic regions from SNP 83678 to 84279 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,565 DEBUG Processing 195/600 atomic regions from SNP 58324 to 58924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,713 DEBUG Processing 149/563 atomic regions from SNP 44490 to 45090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,731 DEBUG Processing 537/677 atomic regions from SNP 161070 to 161670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,795 DEBUG Processing 280/664 atomic regions from SNP 83979 to 84580 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,810 DEBUG Processing 196/600 atomic regions from SNP 58624 to 59224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,923 DEBUG Processing 150/563 atomic regions from SNP 44790 to 45390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,952 DEBUG Processing 538/677 atomic regions from SNP 161370 to 161970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,030 DEBUG Processing 281/664 atomic regions from SNP 84280 to 84881 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,062 DEBUG Processing 197/600 atomic regions from SNP 58924 to 59524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,141 DEBUG Processing 151/563 atomic regions from SNP 45090 to 45690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,177 DEBUG Processing 539/677 atomic regions from SNP 161670 to 162270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,280 DEBUG Processing 282/664 atomic regions from SNP 84581 to 85182 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,305 DEBUG Processing 198/600 atomic regions from SNP 59224 to 59824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,359 DEBUG Processing 152/563 atomic regions from SNP 45390 to 45990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,407 DEBUG Processing 540/677 atomic regions from SNP 161970 to 162570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,521 DEBUG Processing 283/664 atomic regions from SNP 84882 to 85483 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,531 DEBUG Processing 199/600 atomic regions from SNP 59524 to 60124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,580 DEBUG Processing 153/563 atomic regions from SNP 45690 to 46290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,661 DEBUG Processing 541/677 atomic regions from SNP 162270 to 162870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,750 DEBUG Processing 200/600 atomic regions from SNP 59824 to 60424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,751 DEBUG Processing 284/664 atomic regions from SNP 85183 to 85784 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,800 DEBUG Processing 154/563 atomic regions from SNP 45990 to 46590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,928 DEBUG Processing 542/677 atomic regions from SNP 162570 to 163170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,981 DEBUG Processing 201/600 atomic regions from SNP 60124 to 60724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,998 DEBUG Processing 285/664 atomic regions from SNP 85484 to 86085 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,018 DEBUG Processing 155/563 atomic regions from SNP 46290 to 46890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,179 DEBUG Processing 543/677 atomic regions from SNP 162870 to 163470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,202 DEBUG Processing 202/600 atomic regions from SNP 60424 to 61024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,231 DEBUG Processing 286/664 atomic regions from SNP 85785 to 86386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,240 DEBUG Processing 156/563 atomic regions from SNP 46590 to 47190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,420 DEBUG Processing 203/600 atomic regions from SNP 60724 to 61324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,430 DEBUG Processing 544/677 atomic regions from SNP 163170 to 163770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,462 DEBUG Processing 157/563 atomic regions from SNP 46890 to 47490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,463 DEBUG Processing 287/664 atomic regions from SNP 86086 to 86687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,634 DEBUG Processing 204/600 atomic regions from SNP 61024 to 61624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,666 DEBUG Processing 545/677 atomic regions from SNP 163470 to 164070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,684 DEBUG Processing 158/563 atomic regions from SNP 47190 to 47790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,695 DEBUG Processing 288/664 atomic regions from SNP 86387 to 86988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,851 DEBUG Processing 205/600 atomic regions from SNP 61324 to 61924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,895 DEBUG Processing 546/677 atomic regions from SNP 163770 to 164370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,903 DEBUG Processing 159/563 atomic regions from SNP 47490 to 48090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,922 DEBUG Processing 289/664 atomic regions from SNP 86688 to 87289 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,082 DEBUG Processing 206/600 atomic regions from SNP 61624 to 62224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,120 DEBUG Processing 160/563 atomic regions from SNP 47790 to 48390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,132 DEBUG Processing 547/677 atomic regions from SNP 164070 to 164670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,145 DEBUG Processing 290/664 atomic regions from SNP 86989 to 87590 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,326 DEBUG Processing 207/600 atomic regions from SNP 61924 to 62524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,339 DEBUG Processing 161/563 atomic regions from SNP 48090 to 48690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,371 DEBUG Processing 291/664 atomic regions from SNP 87290 to 87891 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,393 DEBUG Processing 548/677 atomic regions from SNP 164370 to 164970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,560 DEBUG Processing 162/563 atomic regions from SNP 48390 to 48990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,575 DEBUG Processing 208/600 atomic regions from SNP 62224 to 62824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,599 DEBUG Processing 292/664 atomic regions from SNP 87591 to 88192 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,657 DEBUG Processing 549/677 atomic regions from SNP 164670 to 165270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,781 DEBUG Processing 163/563 atomic regions from SNP 48690 to 49290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,814 DEBUG Processing 209/600 atomic regions from SNP 62524 to 63124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,832 DEBUG Processing 293/664 atomic regions from SNP 87892 to 88493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,916 DEBUG Processing 550/677 atomic regions from SNP 164970 to 165570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,013 DEBUG Processing 164/563 atomic regions from SNP 48990 to 49590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,033 DEBUG Processing 210/600 atomic regions from SNP 62824 to 63424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,061 DEBUG Processing 294/664 atomic regions from SNP 88193 to 88793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,143 DEBUG Processing 551/677 atomic regions from SNP 165270 to 165870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,246 DEBUG Processing 165/563 atomic regions from SNP 49290 to 49890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,253 DEBUG Processing 211/600 atomic regions from SNP 63124 to 63724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,292 DEBUG Processing 295/664 atomic regions from SNP 88493 to 89093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,382 DEBUG Processing 552/677 atomic regions from SNP 165570 to 166170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,469 DEBUG Processing 166/563 atomic regions from SNP 49590 to 50190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,477 DEBUG Processing 212/600 atomic regions from SNP 63424 to 64024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,523 DEBUG Processing 296/664 atomic regions from SNP 88793 to 89393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,638 DEBUG Processing 553/677 atomic regions from SNP 165870 to 166470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,691 DEBUG Processing 167/563 atomic regions from SNP 49890 to 50490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,698 DEBUG Processing 213/600 atomic regions from SNP 63724 to 64324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,752 DEBUG Processing 297/664 atomic regions from SNP 89093 to 89693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,893 DEBUG Processing 554/677 atomic regions from SNP 166170 to 166770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,914 DEBUG Processing 214/600 atomic regions from SNP 64024 to 64624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,914 DEBUG Processing 168/563 atomic regions from SNP 50190 to 50790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,988 DEBUG Processing 298/664 atomic regions from SNP 89393 to 89993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,138 DEBUG Processing 215/600 atomic regions from SNP 64324 to 64924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,142 DEBUG Processing 555/677 atomic regions from SNP 166470 to 167070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,142 DEBUG Processing 169/563 atomic regions from SNP 50490 to 51090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,223 DEBUG Processing 299/664 atomic regions from SNP 89693 to 90293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,352 DEBUG Processing 216/600 atomic regions from SNP 64624 to 65224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,369 DEBUG Processing 170/563 atomic regions from SNP 50790 to 51390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,399 DEBUG Processing 556/677 atomic regions from SNP 166770 to 167370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,456 DEBUG Processing 300/664 atomic regions from SNP 89993 to 90593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,563 DEBUG Processing 217/600 atomic regions from SNP 64924 to 65524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,594 DEBUG Processing 171/563 atomic regions from SNP 51090 to 51690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,633 DEBUG Processing 557/677 atomic regions from SNP 167070 to 167670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,697 DEBUG Processing 301/664 atomic regions from SNP 90293 to 90893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,784 DEBUG Processing 218/600 atomic regions from SNP 65224 to 65824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,811 DEBUG Processing 172/563 atomic regions from SNP 51390 to 51990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,864 DEBUG Processing 558/677 atomic regions from SNP 167370 to 167970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,940 DEBUG Processing 302/664 atomic regions from SNP 90593 to 91193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,004 DEBUG Processing 219/600 atomic regions from SNP 65524 to 66124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,042 DEBUG Processing 173/563 atomic regions from SNP 51690 to 52290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,097 DEBUG Processing 559/677 atomic regions from SNP 167670 to 168270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,178 DEBUG Processing 303/664 atomic regions from SNP 90893 to 91493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,223 DEBUG Processing 220/600 atomic regions from SNP 65824 to 66424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,274 DEBUG Processing 174/563 atomic regions from SNP 51990 to 52590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,331 DEBUG Processing 560/677 atomic regions from SNP 167970 to 168570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,438 DEBUG Processing 304/664 atomic regions from SNP 91193 to 91793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,443 DEBUG Processing 221/600 atomic regions from SNP 66124 to 66724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,497 DEBUG Processing 175/563 atomic regions from SNP 52290 to 52890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,562 DEBUG Processing 561/677 atomic regions from SNP 168270 to 168870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,667 DEBUG Processing 222/600 atomic regions from SNP 66424 to 67024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,682 DEBUG Processing 305/664 atomic regions from SNP 91493 to 92093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,736 DEBUG Processing 176/563 atomic regions from SNP 52590 to 53190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,789 DEBUG Processing 562/677 atomic regions from SNP 168570 to 169170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,888 DEBUG Processing 223/600 atomic regions from SNP 66724 to 67324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,913 DEBUG Processing 306/664 atomic regions from SNP 91793 to 92393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,995 DEBUG Processing 177/563 atomic regions from SNP 52890 to 53490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,035 DEBUG Processing 563/677 atomic regions from SNP 168870 to 169470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,116 DEBUG Processing 224/600 atomic regions from SNP 67024 to 67624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,152 DEBUG Processing 307/664 atomic regions from SNP 92093 to 92693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,250 DEBUG Processing 178/563 atomic regions from SNP 53190 to 53790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,296 DEBUG Processing 564/677 atomic regions from SNP 169170 to 169770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,331 DEBUG Processing 225/600 atomic regions from SNP 67324 to 67924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,376 DEBUG Processing 308/664 atomic regions from SNP 92393 to 92993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,498 DEBUG Processing 179/563 atomic regions from SNP 53490 to 54090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,534 DEBUG Processing 565/677 atomic regions from SNP 169470 to 170070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,563 DEBUG Processing 226/600 atomic regions from SNP 67624 to 68224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,606 DEBUG Processing 309/664 atomic regions from SNP 92693 to 93293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,746 DEBUG Processing 180/563 atomic regions from SNP 53790 to 54390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,762 DEBUG Processing 566/677 atomic regions from SNP 169770 to 170370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,791 DEBUG Processing 227/600 atomic regions from SNP 67924 to 68524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,835 DEBUG Processing 310/664 atomic regions from SNP 92993 to 93593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,971 DEBUG Processing 181/563 atomic regions from SNP 54090 to 54690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,985 DEBUG Processing 567/677 atomic regions from SNP 170070 to 170670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,013 DEBUG Processing 228/600 atomic regions from SNP 68224 to 68824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,063 DEBUG Processing 311/664 atomic regions from SNP 93293 to 93893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,208 DEBUG Processing 182/563 atomic regions from SNP 54390 to 54990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,213 DEBUG Processing 568/677 atomic regions from SNP 170370 to 170970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,238 DEBUG Processing 229/600 atomic regions from SNP 68524 to 69124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,290 DEBUG Processing 312/664 atomic regions from SNP 93593 to 94193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,397 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:56:35,428 DEBUG Processing 183/563 atomic regions from SNP 54690 to 55290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,435 DEBUG Processing 569/677 atomic regions from SNP 170670 to 171270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,462 DEBUG Processing 230/600 atomic regions from SNP 68824 to 69424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,519 DEBUG Processing 313/664 atomic regions from SNP 93893 to 94493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,652 DEBUG Processing 184/563 atomic regions from SNP 54990 to 55590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,686 DEBUG Processing 570/677 atomic regions from SNP 170970 to 171570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,691 DEBUG Processing 231/600 atomic regions from SNP 69124 to 69724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,757 DEBUG Processing 314/664 atomic regions from SNP 94193 to 94793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,863 DEBUG Processing 185/563 atomic regions from SNP 55290 to 55890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,912 DEBUG Processing 232/600 atomic regions from SNP 69424 to 70024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,919 DEBUG Processing 571/677 atomic regions from SNP 171270 to 171870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,003 DEBUG Processing 315/664 atomic regions from SNP 94493 to 95093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,104 DEBUG Processing 186/563 atomic regions from SNP 55590 to 56190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,125 DEBUG Processing 233/600 atomic regions from SNP 69724 to 70324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,145 DEBUG Processing 572/677 atomic regions from SNP 171570 to 172170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,235 DEBUG Processing 316/664 atomic regions from SNP 94793 to 95393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,336 DEBUG Processing 187/563 atomic regions from SNP 55890 to 56490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,336 DEBUG Processing 234/600 atomic regions from SNP 70024 to 70624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,369 DEBUG Processing 573/677 atomic regions from SNP 171870 to 172470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,489 DEBUG Processing 317/664 atomic regions from SNP 95093 to 95693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,555 DEBUG Processing 188/563 atomic regions from SNP 56190 to 56790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,571 DEBUG Processing 235/600 atomic regions from SNP 70324 to 70924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,590 DEBUG Processing 574/677 atomic regions from SNP 172170 to 172770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,717 DEBUG Processing 318/664 atomic regions from SNP 95393 to 95993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,778 DEBUG Processing 189/563 atomic regions from SNP 56490 to 57090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,789 DEBUG Processing 236/600 atomic regions from SNP 70624 to 71224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,811 DEBUG Processing 575/677 atomic regions from SNP 172470 to 173070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,943 DEBUG Processing 319/664 atomic regions from SNP 95693 to 96293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,000 DEBUG Processing 190/563 atomic regions from SNP 56790 to 57390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,008 DEBUG Processing 237/600 atomic regions from SNP 70924 to 71524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,041 DEBUG Processing 576/677 atomic regions from SNP 172770 to 173370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,165 DEBUG Processing 320/664 atomic regions from SNP 95993 to 96593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,219 DEBUG Processing 191/563 atomic regions from SNP 57090 to 57690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,227 DEBUG Processing 238/600 atomic regions from SNP 71224 to 71824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,260 DEBUG Processing 577/677 atomic regions from SNP 173070 to 173670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,388 DEBUG Processing 321/664 atomic regions from SNP 96293 to 96893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,438 DEBUG Processing 192/563 atomic regions from SNP 57390 to 57990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,445 DEBUG Processing 239/600 atomic regions from SNP 71524 to 72124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,479 DEBUG Processing 578/677 atomic regions from SNP 173370 to 173970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,617 DEBUG Processing 322/664 atomic regions from SNP 96593 to 97193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,659 DEBUG Processing 193/563 atomic regions from SNP 57690 to 58290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,661 DEBUG Processing 240/600 atomic regions from SNP 71824 to 72424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,697 DEBUG Processing 579/677 atomic regions from SNP 173670 to 174270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,844 DEBUG Processing 323/664 atomic regions from SNP 96893 to 97493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,876 DEBUG Processing 241/600 atomic regions from SNP 72124 to 72724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,877 DEBUG Processing 194/563 atomic regions from SNP 57990 to 58590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,921 DEBUG Processing 580/677 atomic regions from SNP 173970 to 174570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,073 DEBUG Processing 324/664 atomic regions from SNP 97193 to 97793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,099 DEBUG Processing 195/563 atomic regions from SNP 58290 to 58890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,117 DEBUG Processing 242/600 atomic regions from SNP 72424 to 73024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,148 DEBUG Processing 581/677 atomic regions from SNP 174270 to 174870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,303 DEBUG Processing 325/664 atomic regions from SNP 97493 to 98093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,328 DEBUG Processing 196/563 atomic regions from SNP 58590 to 59190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,365 DEBUG Processing 243/600 atomic regions from SNP 72724 to 73324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,379 DEBUG Processing 582/677 atomic regions from SNP 174570 to 175170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,527 DEBUG Processing 326/664 atomic regions from SNP 97793 to 98393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,563 DEBUG Processing 197/563 atomic regions from SNP 58890 to 59490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,581 DEBUG Processing 244/600 atomic regions from SNP 73024 to 73624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,617 DEBUG Processing 583/677 atomic regions from SNP 174870 to 175470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,772 DEBUG Processing 327/664 atomic regions from SNP 98093 to 98693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,796 DEBUG Processing 245/600 atomic regions from SNP 73324 to 73924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,807 DEBUG Processing 198/563 atomic regions from SNP 59190 to 59790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,862 DEBUG Processing 584/677 atomic regions from SNP 175170 to 175770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,001 DEBUG Processing 328/664 atomic regions from SNP 98393 to 98993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,013 DEBUG Processing 246/600 atomic regions from SNP 73624 to 74224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,047 DEBUG Processing 199/563 atomic regions from SNP 59490 to 60090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,089 DEBUG Processing 585/677 atomic regions from SNP 175470 to 176070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,226 DEBUG Processing 247/600 atomic regions from SNP 73924 to 74524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,227 DEBUG Processing 329/664 atomic regions from SNP 98693 to 99293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,264 DEBUG Processing 200/563 atomic regions from SNP 59790 to 60390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,315 DEBUG Processing 586/677 atomic regions from SNP 175770 to 176370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,441 DEBUG Processing 248/600 atomic regions from SNP 74224 to 74824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,448 DEBUG Processing 330/664 atomic regions from SNP 98993 to 99593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,482 DEBUG Processing 201/563 atomic regions from SNP 60090 to 60690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,542 DEBUG Processing 587/677 atomic regions from SNP 176070 to 176670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,657 DEBUG Processing 249/600 atomic regions from SNP 74524 to 75124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,675 DEBUG Processing 331/664 atomic regions from SNP 99293 to 99893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,701 DEBUG Processing 202/563 atomic regions from SNP 60390 to 60990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,774 DEBUG Processing 588/677 atomic regions from SNP 176370 to 176970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,872 DEBUG Processing 250/600 atomic regions from SNP 74824 to 75424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,902 DEBUG Processing 332/664 atomic regions from SNP 99593 to 100193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,923 DEBUG Processing 203/563 atomic regions from SNP 60690 to 61290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,012 DEBUG Processing 589/677 atomic regions from SNP 176670 to 177270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,085 DEBUG Processing 251/600 atomic regions from SNP 75124 to 75724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,123 DEBUG Processing 333/664 atomic regions from SNP 99893 to 100493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,147 DEBUG Processing 204/563 atomic regions from SNP 60990 to 61590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,245 DEBUG Processing 590/677 atomic regions from SNP 176970 to 177570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,307 DEBUG Processing 252/600 atomic regions from SNP 75424 to 76024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,352 DEBUG Processing 334/664 atomic regions from SNP 100193 to 100793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,368 DEBUG Processing 205/563 atomic regions from SNP 61290 to 61890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,479 DEBUG Processing 591/677 atomic regions from SNP 177270 to 177870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,542 DEBUG Processing 253/600 atomic regions from SNP 75724 to 76324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,586 DEBUG Processing 335/664 atomic regions from SNP 100493 to 101093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,589 DEBUG Processing 206/563 atomic regions from SNP 61590 to 62190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,702 DEBUG Processing 592/677 atomic regions from SNP 177570 to 178170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,772 DEBUG Processing 254/600 atomic regions from SNP 76024 to 76624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,817 DEBUG Processing 207/563 atomic regions from SNP 61890 to 62490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,831 DEBUG Processing 336/664 atomic regions from SNP 100793 to 101393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,937 DEBUG Processing 593/677 atomic regions from SNP 177870 to 178470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,986 DEBUG Subchromosome time: 209.9071059640264, subchromosome SNPs: 212307 2025-01-31 09:56:40,986 DEBUG Estimated BADs: [14.79, 2.96, 0.74, 0.37, 1.48, 0.37, 1.48, 0.37, 0.74, 11.84, 1.48, 2.96, 1.48, 14.79, 5.92, 1.48, 14.79, 2.96, 1.48, 2.96, 0.49, 2.96, 8.88, 1.48, 2.96, 1.48, 0.74, 4.44, 2.96] SNP counts: [150, 6409, 10113, 9900, 10243, 7219, 13558, 13850, 7488, 191, 17885, 6610, 11788, 307, 2953, 7146, 124, 8770, 9007, 9292, 8017, 8312, 474, 2620, 15077, 3893, 8249, 3470, 9192] SNP IDs counts: [150, 6409, 10113, 9900, 10243, 7219, 13558, 13850, 7488, 191, 17885, 6610, 11788, 307, 2953, 7146, 124, 8770, 9007, 9292, 8017, 8312, 474, 2620, 15077, 3893, 8249, 3470, 9192] Critical gap: 592602bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.70Mbp, 12.67Mbp, 18.72Mbp, 24.43Mbp, 28.75Mbp, 36.45Mbp, 44.45Mbp, 48.77Mbp, 48.88Mbp, 58.90Mbp, 62.54Mbp, 68.97Mbp, 69.13Mbp, 70.70Mbp, 74.83Mbp, 74.90Mbp, 79.61Mbp, 84.57Mbp, 89.56Mbp, 94.13Mbp, 98.57Mbp, 98.84Mbp, 100.30Mbp, 108.45Mbp, 110.59Mbp, 115.15Mbp, 117.02Mbp, 122.08Mbp] 2025-01-31 09:56:40,986 DEBUG chr11 time: 209.90763124497607 s 2025-01-31 09:56:41,008 DEBUG Processing 255/600 atomic regions from SNP 76324 to 76924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,059 DEBUG Processing 208/563 atomic regions from SNP 62190 to 62790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,064 DEBUG Processing 337/664 atomic regions from SNP 101093 to 101693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,136 DEBUG chr11: Fitting background model for 29 segments 2025-01-31 09:56:41,163 DEBUG Processing 594/677 atomic regions from SNP 178170 to 178770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,230 DEBUG Processing 256/600 atomic regions from SNP 76624 to 77224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,305 DEBUG Processing 338/664 atomic regions from SNP 101393 to 101993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,313 DEBUG Processing 209/563 atomic regions from SNP 62490 to 63090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,394 DEBUG Processing 595/677 atomic regions from SNP 178470 to 179070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,442 DEBUG Processing 257/600 atomic regions from SNP 76924 to 77524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,543 DEBUG Processing 339/664 atomic regions from SNP 101693 to 102293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,570 DEBUG Processing 210/563 atomic regions from SNP 62790 to 63390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,627 DEBUG Processing 596/677 atomic regions from SNP 178770 to 179370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,657 DEBUG Processing 258/600 atomic regions from SNP 77224 to 77824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,786 DEBUG Processing 340/664 atomic regions from SNP 101993 to 102593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,827 DEBUG Processing 211/563 atomic regions from SNP 63090 to 63690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,855 DEBUG Processing 597/677 atomic regions from SNP 179070 to 179670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,875 DEBUG Processing 259/600 atomic regions from SNP 77524 to 78124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,027 DEBUG Processing 341/664 atomic regions from SNP 102293 to 102893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,073 DEBUG Processing 212/563 atomic regions from SNP 63390 to 63990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,088 DEBUG Processing 598/677 atomic regions from SNP 179370 to 179970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,105 DEBUG Processing 260/600 atomic regions from SNP 77824 to 78424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,270 DEBUG Processing 342/664 atomic regions from SNP 102593 to 103193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,321 DEBUG Processing 213/563 atomic regions from SNP 63690 to 64290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,326 DEBUG Processing 599/677 atomic regions from SNP 179670 to 180270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,335 DEBUG Processing 261/600 atomic regions from SNP 78124 to 78724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,505 DEBUG Processing 343/664 atomic regions from SNP 102893 to 103493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,557 DEBUG Processing 600/677 atomic regions from SNP 179970 to 180570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,563 DEBUG Processing 262/600 atomic regions from SNP 78424 to 79024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,571 DEBUG Processing 214/563 atomic regions from SNP 63990 to 64590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,735 DEBUG Processing 344/664 atomic regions from SNP 103193 to 103793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,790 DEBUG Processing 263/600 atomic regions from SNP 78724 to 79324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,801 DEBUG Processing 601/677 atomic regions from SNP 180270 to 180870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,821 DEBUG Processing 215/563 atomic regions from SNP 64290 to 64890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,963 DEBUG Processing 345/664 atomic regions from SNP 103493 to 104093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,016 DEBUG Processing 264/600 atomic regions from SNP 79024 to 79624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,047 DEBUG Processing 602/677 atomic regions from SNP 180570 to 181170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,063 DEBUG Processing 216/563 atomic regions from SNP 64590 to 65190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,187 DEBUG Processing 346/664 atomic regions from SNP 103793 to 104393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,238 DEBUG Processing 265/600 atomic regions from SNP 79324 to 79924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,272 DEBUG Processing 603/677 atomic regions from SNP 180870 to 181470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,287 DEBUG Processing 217/563 atomic regions from SNP 64890 to 65490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,417 DEBUG Processing 347/664 atomic regions from SNP 104093 to 104693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,457 DEBUG Processing 266/600 atomic regions from SNP 79624 to 80224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,501 DEBUG Processing 604/677 atomic regions from SNP 181170 to 181770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,513 DEBUG Processing 218/563 atomic regions from SNP 65190 to 65790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,648 DEBUG Processing 348/664 atomic regions from SNP 104393 to 104993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,674 DEBUG Processing 267/600 atomic regions from SNP 79924 to 80524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,718 DEBUG Processing 605/677 atomic regions from SNP 181470 to 182070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,738 DEBUG Processing 219/563 atomic regions from SNP 65490 to 66090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,880 DEBUG Processing 349/664 atomic regions from SNP 104693 to 105293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,896 DEBUG Processing 268/600 atomic regions from SNP 80224 to 80824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,934 DEBUG Processing 606/677 atomic regions from SNP 181770 to 182370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,957 DEBUG Processing 220/563 atomic regions from SNP 65790 to 66390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,111 DEBUG Processing 350/664 atomic regions from SNP 104993 to 105593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,118 DEBUG Processing 269/600 atomic regions from SNP 80524 to 81124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,152 DEBUG Processing 607/677 atomic regions from SNP 182070 to 182670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,173 DEBUG Processing 221/563 atomic regions from SNP 66090 to 66690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,356 DEBUG Processing 351/664 atomic regions from SNP 105293 to 105893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,357 DEBUG Processing 270/600 atomic regions from SNP 80824 to 81424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,385 DEBUG Processing 608/677 atomic regions from SNP 182370 to 182970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,394 DEBUG Processing 222/563 atomic regions from SNP 66390 to 66990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,574 DEBUG Processing 271/600 atomic regions from SNP 81124 to 81724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,580 DEBUG Processing 352/664 atomic regions from SNP 105593 to 106193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,617 DEBUG Processing 609/677 atomic regions from SNP 182670 to 183270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,626 DEBUG Processing 223/563 atomic regions from SNP 66690 to 67290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,779 DEBUG Processing 272/600 atomic regions from SNP 81424 to 82024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,797 DEBUG Processing 353/664 atomic regions from SNP 105893 to 106493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,837 DEBUG Processing 610/677 atomic regions from SNP 182970 to 183570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,838 DEBUG Processing 224/563 atomic regions from SNP 66990 to 67590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,994 DEBUG Processing 273/600 atomic regions from SNP 81724 to 82324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,017 DEBUG Processing 354/664 atomic regions from SNP 106193 to 106793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,062 DEBUG Processing 225/563 atomic regions from SNP 67290 to 67890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,075 DEBUG Processing 611/677 atomic regions from SNP 183270 to 183870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,195 DEBUG Processing 274/600 atomic regions from SNP 82024 to 82624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,232 DEBUG Processing 355/664 atomic regions from SNP 106493 to 107093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,283 DEBUG Processing 226/563 atomic regions from SNP 67590 to 68190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,304 DEBUG Processing 612/677 atomic regions from SNP 183570 to 184170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,408 DEBUG Processing 275/600 atomic regions from SNP 82324 to 82924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,459 DEBUG Processing 356/664 atomic regions from SNP 106793 to 107393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,504 DEBUG Processing 227/563 atomic regions from SNP 67890 to 68490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,525 DEBUG Processing 613/677 atomic regions from SNP 183870 to 184470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,615 DEBUG Processing 276/600 atomic regions from SNP 82624 to 83224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,677 DEBUG Processing 357/664 atomic regions from SNP 107093 to 107693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,717 DEBUG Processing 228/563 atomic regions from SNP 68190 to 68790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,749 DEBUG Processing 614/677 atomic regions from SNP 184170 to 184770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,829 DEBUG Processing 277/600 atomic regions from SNP 82924 to 83524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,902 DEBUG Processing 358/664 atomic regions from SNP 107393 to 107993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,934 DEBUG Processing 229/563 atomic regions from SNP 68490 to 69090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,972 DEBUG Processing 615/677 atomic regions from SNP 184470 to 185070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,047 DEBUG Processing 278/600 atomic regions from SNP 83224 to 83824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,123 DEBUG Processing 359/664 atomic regions from SNP 107693 to 108293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,144 DEBUG Processing 230/563 atomic regions from SNP 68790 to 69390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,198 DEBUG Processing 616/677 atomic regions from SNP 184770 to 185370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,272 DEBUG Processing 279/600 atomic regions from SNP 83524 to 84124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,348 DEBUG Processing 360/664 atomic regions from SNP 107993 to 108593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,360 DEBUG Processing 231/563 atomic regions from SNP 69090 to 69690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,438 DEBUG Processing 617/677 atomic regions from SNP 185070 to 185670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,490 DEBUG Processing 280/600 atomic regions from SNP 83824 to 84424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,571 DEBUG Processing 232/563 atomic regions from SNP 69390 to 69990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,592 DEBUG Processing 361/664 atomic regions from SNP 108293 to 108893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,678 DEBUG Processing 618/677 atomic regions from SNP 185370 to 185970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,704 DEBUG Processing 281/600 atomic regions from SNP 84124 to 84724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,787 DEBUG Processing 233/563 atomic regions from SNP 69690 to 70290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,868 DEBUG Processing 362/664 atomic regions from SNP 108593 to 109193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,915 DEBUG Processing 282/600 atomic regions from SNP 84424 to 85024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,949 DEBUG Processing 619/677 atomic regions from SNP 185670 to 186270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,002 DEBUG Processing 234/563 atomic regions from SNP 69990 to 70590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,113 DEBUG Processing 363/664 atomic regions from SNP 108893 to 109493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,126 DEBUG Processing 283/600 atomic regions from SNP 84724 to 85324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,183 DEBUG Processing 620/677 atomic regions from SNP 185970 to 186570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,226 DEBUG Processing 235/563 atomic regions from SNP 70290 to 70890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,337 DEBUG Processing 284/600 atomic regions from SNP 85024 to 85624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,346 DEBUG Processing 364/664 atomic regions from SNP 109193 to 109793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,416 DEBUG Processing 621/677 atomic regions from SNP 186270 to 186870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,446 DEBUG Processing 236/563 atomic regions from SNP 70590 to 71190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,548 DEBUG Processing 285/600 atomic regions from SNP 85324 to 85924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,594 DEBUG Processing 365/664 atomic regions from SNP 109493 to 110093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,653 DEBUG Processing 622/677 atomic regions from SNP 186570 to 187170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,664 DEBUG Processing 237/563 atomic regions from SNP 70890 to 71490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,767 DEBUG Processing 286/600 atomic regions from SNP 85624 to 86224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,836 DEBUG Processing 366/664 atomic regions from SNP 109793 to 110393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,881 DEBUG Processing 623/677 atomic regions from SNP 186870 to 187470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,884 DEBUG Processing 238/563 atomic regions from SNP 71190 to 71790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,984 DEBUG Processing 287/600 atomic regions from SNP 85924 to 86524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,076 DEBUG Processing 367/664 atomic regions from SNP 110093 to 110693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,111 DEBUG Processing 239/563 atomic regions from SNP 71490 to 72090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,114 DEBUG Processing 624/677 atomic regions from SNP 187170 to 187770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,219 DEBUG Processing 288/600 atomic regions from SNP 86224 to 86824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,310 DEBUG Processing 368/664 atomic regions from SNP 110393 to 110993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,334 DEBUG Processing 240/563 atomic regions from SNP 71790 to 72390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,345 DEBUG Processing 625/677 atomic regions from SNP 187470 to 188070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,363 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:56:48,365 DEBUG chr17: Signal quantile: 0.988. signal threshold: 12. Best RMSEA: 0.015 2025-01-31 09:56:48,443 DEBUG Processing 289/600 atomic regions from SNP 86524 to 87124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,541 DEBUG Processing 369/664 atomic regions from SNP 110693 to 111293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,553 DEBUG Processing 241/563 atomic regions from SNP 72090 to 72690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,578 DEBUG Processing 626/677 atomic regions from SNP 187770 to 188370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,673 DEBUG Processing 290/600 atomic regions from SNP 86824 to 87424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,777 DEBUG Processing 370/664 atomic regions from SNP 110993 to 111593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,799 DEBUG Processing 242/563 atomic regions from SNP 72390 to 72990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,809 DEBUG Processing 627/677 atomic regions from SNP 188070 to 188670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,894 DEBUG Processing 291/600 atomic regions from SNP 87124 to 87724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,010 DEBUG Processing 371/664 atomic regions from SNP 111293 to 111893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,024 DEBUG Processing 243/563 atomic regions from SNP 72690 to 73290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,038 DEBUG Processing 628/677 atomic regions from SNP 188370 to 188970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,108 DEBUG Processing 292/600 atomic regions from SNP 87424 to 88024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,242 DEBUG Processing 244/563 atomic regions from SNP 72990 to 73590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,253 DEBUG Processing 372/664 atomic regions from SNP 111593 to 112193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,271 DEBUG Processing 629/677 atomic regions from SNP 188670 to 189270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,323 DEBUG Processing 293/600 atomic regions from SNP 87724 to 88324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,462 DEBUG Processing 245/563 atomic regions from SNP 73290 to 73890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,524 DEBUG Processing 373/664 atomic regions from SNP 111893 to 112493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,533 DEBUG Processing 630/677 atomic regions from SNP 188970 to 189570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,542 DEBUG Processing 294/600 atomic regions from SNP 88024 to 88624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,680 DEBUG Processing 246/563 atomic regions from SNP 73590 to 74190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,756 DEBUG Processing 374/664 atomic regions from SNP 112193 to 112793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,763 DEBUG Processing 295/600 atomic regions from SNP 88324 to 88924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,797 DEBUG Processing 631/677 atomic regions from SNP 189270 to 189870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,901 DEBUG Processing 247/563 atomic regions from SNP 73890 to 74490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,988 DEBUG Processing 296/600 atomic regions from SNP 88624 to 89224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,995 DEBUG Processing 375/664 atomic regions from SNP 112493 to 113093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,050 DEBUG Processing 632/677 atomic regions from SNP 189570 to 190170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,136 DEBUG Processing 248/563 atomic regions from SNP 74190 to 74790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,210 DEBUG Processing 297/600 atomic regions from SNP 88924 to 89524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,229 DEBUG Processing 376/664 atomic regions from SNP 112793 to 113393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,247 DEBUG chr17 total SNP count: 160369 2025-01-31 09:56:50,248 DEBUG chr17 length: 94987271 2025-01-31 09:56:50,248 DEBUG ----------------------------------------- 2025-01-31 09:56:50,248 INFO Processing SNPs in chr17 2025-01-31 09:56:50,279 DEBUG Processing 633/677 atomic regions from SNP 189870 to 190470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,360 DEBUG Processing 249/563 atomic regions from SNP 74490 to 75090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,417 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 160369)] 2025-01-31 09:56:50,431 DEBUG Processing 298/600 atomic regions from SNP 89224 to 89824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,471 DEBUG Processing 377/664 atomic regions from SNP 113093 to 113693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,508 DEBUG Processing 634/677 atomic regions from SNP 190170 to 190770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,530 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:50,586 DEBUG Processing 250/563 atomic regions from SNP 74790 to 75390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,656 DEBUG Processing 299/600 atomic regions from SNP 89524 to 90124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,722 DEBUG Processing 378/664 atomic regions from SNP 113393 to 113993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,736 DEBUG Processing 635/677 atomic regions from SNP 190470 to 191070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,807 DEBUG Processing 251/563 atomic regions from SNP 75090 to 75690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,871 DEBUG Processing 300/600 atomic regions from SNP 89824 to 90424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,967 DEBUG Processing 379/664 atomic regions from SNP 113693 to 114293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,979 DEBUG Processing 636/677 atomic regions from SNP 190770 to 191370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,025 DEBUG Processing 252/563 atomic regions from SNP 75390 to 75990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,085 DEBUG Processing 301/600 atomic regions from SNP 90124 to 90724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,218 DEBUG Processing 380/664 atomic regions from SNP 113993 to 114593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,237 DEBUG Processing 637/677 atomic regions from SNP 191070 to 191670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,248 DEBUG Processing 253/563 atomic regions from SNP 75690 to 76290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,312 DEBUG Processing 302/600 atomic regions from SNP 90424 to 91024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,453 DEBUG Processing 381/664 atomic regions from SNP 114293 to 114893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,480 DEBUG Processing 638/677 atomic regions from SNP 191370 to 191970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,488 DEBUG Processing 254/563 atomic regions from SNP 75990 to 76590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,545 DEBUG Processing 303/600 atomic regions from SNP 90724 to 91324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,676 DEBUG Processing 382/664 atomic regions from SNP 114593 to 115193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,701 DEBUG Processing 639/677 atomic regions from SNP 191670 to 192270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,709 DEBUG Processing 255/563 atomic regions from SNP 76290 to 76890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,783 DEBUG Processing 304/600 atomic regions from SNP 91024 to 91624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,905 DEBUG Processing 383/664 atomic regions from SNP 114893 to 115493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,917 DEBUG Processing 640/677 atomic regions from SNP 191970 to 192570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,921 DEBUG Processing 256/563 atomic regions from SNP 76590 to 77190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,026 DEBUG Processing 305/600 atomic regions from SNP 91324 to 91924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,138 DEBUG Processing 384/664 atomic regions from SNP 115193 to 115793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,138 DEBUG Processing 257/563 atomic regions from SNP 76890 to 77490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,142 DEBUG Processing 641/677 atomic regions from SNP 192270 to 192870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,246 DEBUG Processing 306/600 atomic regions from SNP 91624 to 92224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,364 DEBUG Processing 258/563 atomic regions from SNP 77190 to 77790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,371 DEBUG Processing 642/677 atomic regions from SNP 192570 to 193170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,375 DEBUG Processing 385/664 atomic regions from SNP 115493 to 116093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,472 DEBUG Processing 307/600 atomic regions from SNP 91924 to 92524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,578 DEBUG Processing 259/563 atomic regions from SNP 77490 to 78090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,601 DEBUG Processing 386/664 atomic regions from SNP 115793 to 116393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,612 DEBUG Processing 643/677 atomic regions from SNP 192870 to 193470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,685 DEBUG Processing 308/600 atomic regions from SNP 92224 to 92824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,798 DEBUG Processing 260/563 atomic regions from SNP 77790 to 78390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,830 DEBUG Processing 387/664 atomic regions from SNP 116093 to 116693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,837 DEBUG Processing 644/677 atomic regions from SNP 193170 to 193770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,906 DEBUG Processing 309/600 atomic regions from SNP 92524 to 93124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,019 DEBUG Processing 261/563 atomic regions from SNP 78090 to 78690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,060 DEBUG Processing 645/677 atomic regions from SNP 193470 to 194070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,071 DEBUG Processing 388/664 atomic regions from SNP 116393 to 116993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,124 DEBUG Processing 310/600 atomic regions from SNP 92824 to 93424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,235 DEBUG Processing 262/563 atomic regions from SNP 78390 to 78990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,279 DEBUG Processing 646/677 atomic regions from SNP 193770 to 194370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,296 DEBUG Processing 389/664 atomic regions from SNP 116693 to 117293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,339 DEBUG Processing 311/600 atomic regions from SNP 93124 to 93724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,450 DEBUG Processing 263/563 atomic regions from SNP 78690 to 79290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,493 DEBUG Processing 647/677 atomic regions from SNP 194070 to 194670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,517 DEBUG Processing 390/664 atomic regions from SNP 116993 to 117593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,548 DEBUG Processing 312/600 atomic regions from SNP 93424 to 94024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,668 DEBUG Processing 264/563 atomic regions from SNP 78990 to 79590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,711 DEBUG Processing 648/677 atomic regions from SNP 194370 to 194970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,756 DEBUG Processing 391/664 atomic regions from SNP 117293 to 117893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,760 DEBUG Processing 313/600 atomic regions from SNP 93724 to 94324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,896 DEBUG Processing 265/563 atomic regions from SNP 79290 to 79890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,928 DEBUG Processing 649/677 atomic regions from SNP 194670 to 195270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,972 DEBUG Processing 314/600 atomic regions from SNP 94024 to 94624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,983 DEBUG Processing 392/664 atomic regions from SNP 117593 to 118193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,114 DEBUG Processing 266/563 atomic regions from SNP 79590 to 80190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,141 DEBUG Processing 650/677 atomic regions from SNP 194970 to 195570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,187 DEBUG Processing 315/600 atomic regions from SNP 94324 to 94924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,210 DEBUG Processing 393/664 atomic regions from SNP 117893 to 118493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,332 DEBUG Processing 267/563 atomic regions from SNP 79890 to 80490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,360 DEBUG Processing 651/677 atomic regions from SNP 195270 to 195870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,412 DEBUG Processing 316/600 atomic regions from SNP 94624 to 95224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,442 DEBUG Processing 394/664 atomic regions from SNP 118193 to 118793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,547 DEBUG Processing 268/563 atomic regions from SNP 80190 to 80790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,576 DEBUG Processing 652/677 atomic regions from SNP 195570 to 196170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,637 DEBUG Processing 317/600 atomic regions from SNP 94924 to 95524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,681 DEBUG Processing 395/664 atomic regions from SNP 118493 to 119093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,770 DEBUG Processing 269/563 atomic regions from SNP 80490 to 81090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,808 DEBUG Processing 653/677 atomic regions from SNP 195870 to 196470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,870 DEBUG Processing 318/600 atomic regions from SNP 95224 to 95824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,927 DEBUG Processing 396/664 atomic regions from SNP 118793 to 119393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,997 DEBUG Processing 270/563 atomic regions from SNP 80790 to 81390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,038 DEBUG Processing 654/677 atomic regions from SNP 196170 to 196770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,102 DEBUG Processing 319/600 atomic regions from SNP 95524 to 96124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,170 DEBUG Processing 397/664 atomic regions from SNP 119093 to 119693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,216 DEBUG Processing 271/563 atomic regions from SNP 81090 to 81690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,259 DEBUG Processing 655/677 atomic regions from SNP 196470 to 197070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,336 DEBUG Processing 320/600 atomic regions from SNP 95824 to 96424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,412 DEBUG Processing 398/664 atomic regions from SNP 119393 to 119993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,438 DEBUG Processing 272/563 atomic regions from SNP 81390 to 81990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,481 DEBUG Processing 656/677 atomic regions from SNP 196770 to 197370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,584 DEBUG Processing 321/600 atomic regions from SNP 96124 to 96724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,640 DEBUG Processing 399/664 atomic regions from SNP 119693 to 120293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,654 DEBUG Processing 273/563 atomic regions from SNP 81690 to 82290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,697 DEBUG Processing 657/677 atomic regions from SNP 197070 to 197670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,830 DEBUG Processing 322/600 atomic regions from SNP 96424 to 97024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,868 DEBUG Processing 400/664 atomic regions from SNP 119993 to 120593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,875 DEBUG Processing 274/563 atomic regions from SNP 81990 to 82590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,921 DEBUG Processing 658/677 atomic regions from SNP 197370 to 197970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,068 DEBUG Processing 323/600 atomic regions from SNP 96724 to 97324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,097 DEBUG Processing 275/563 atomic regions from SNP 82290 to 82890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,125 DEBUG Processing 401/664 atomic regions from SNP 120293 to 120893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,144 DEBUG Processing 659/677 atomic regions from SNP 197670 to 198270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,285 DEBUG Processing 324/600 atomic regions from SNP 97024 to 97624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,316 DEBUG Processing 276/563 atomic regions from SNP 82590 to 83190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,365 DEBUG Processing 660/677 atomic regions from SNP 197970 to 198570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,367 DEBUG Processing 402/664 atomic regions from SNP 120593 to 121193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,514 DEBUG Processing 325/600 atomic regions from SNP 97324 to 97924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,533 DEBUG Processing 277/563 atomic regions from SNP 82890 to 83490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,579 DEBUG Processing 661/677 atomic regions from SNP 198270 to 198870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,598 DEBUG Processing 403/664 atomic regions from SNP 120893 to 121493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,757 DEBUG Processing 326/600 atomic regions from SNP 97624 to 98224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,763 DEBUG Processing 278/563 atomic regions from SNP 83190 to 83790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,810 DEBUG Processing 662/677 atomic regions from SNP 198570 to 199170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,825 DEBUG Processing 404/664 atomic regions from SNP 121193 to 121793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,976 DEBUG Processing 279/563 atomic regions from SNP 83490 to 84090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,006 DEBUG Processing 327/600 atomic regions from SNP 97924 to 98524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,032 DEBUG Processing 663/677 atomic regions from SNP 198870 to 199470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,078 DEBUG Processing 405/664 atomic regions from SNP 121493 to 122093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,210 DEBUG Processing 280/563 atomic regions from SNP 83790 to 84390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,257 DEBUG Processing 664/677 atomic regions from SNP 199170 to 199770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,257 DEBUG Processing 328/600 atomic regions from SNP 98224 to 98824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,339 DEBUG Processing 406/664 atomic regions from SNP 121793 to 122393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,450 DEBUG Processing 281/563 atomic regions from SNP 84090 to 84690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,490 DEBUG Processing 665/677 atomic regions from SNP 199470 to 200070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,498 DEBUG Processing 329/600 atomic regions from SNP 98524 to 99124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,602 DEBUG Processing 407/664 atomic regions from SNP 122093 to 122693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,662 DEBUG Processing 282/563 atomic regions from SNP 84390 to 84990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,721 DEBUG Processing 666/677 atomic regions from SNP 199770 to 200370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,733 DEBUG Processing 330/600 atomic regions from SNP 98824 to 99424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,872 DEBUG Processing 408/664 atomic regions from SNP 122393 to 122993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,878 DEBUG Processing 283/563 atomic regions from SNP 84690 to 85290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,946 DEBUG Processing 331/600 atomic regions from SNP 99124 to 99724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,950 DEBUG Processing 667/677 atomic regions from SNP 200070 to 200670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,094 DEBUG Processing 284/563 atomic regions from SNP 84990 to 85590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,125 DEBUG Processing 409/664 atomic regions from SNP 122693 to 123293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,152 DEBUG Processing 332/600 atomic regions from SNP 99424 to 100024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,168 DEBUG Processing 668/677 atomic regions from SNP 200370 to 200970 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,314 DEBUG Processing 285/563 atomic regions from SNP 85290 to 85890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,368 DEBUG Processing 333/600 atomic regions from SNP 99724 to 100324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,370 DEBUG Processing 410/664 atomic regions from SNP 122993 to 123593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,387 DEBUG Processing 669/677 atomic regions from SNP 200670 to 201270 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,539 DEBUG Processing 286/563 atomic regions from SNP 85590 to 86190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,589 DEBUG Processing 334/600 atomic regions from SNP 100024 to 100624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,600 DEBUG Processing 411/664 atomic regions from SNP 123293 to 123893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,623 DEBUG Processing 670/677 atomic regions from SNP 200970 to 201570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,761 DEBUG Processing 287/563 atomic regions from SNP 85890 to 86490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,811 DEBUG Processing 335/600 atomic regions from SNP 100324 to 100924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,835 DEBUG Processing 671/677 atomic regions from SNP 201270 to 201870 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,835 DEBUG Processing 412/664 atomic regions from SNP 123593 to 124193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,975 DEBUG Processing 288/563 atomic regions from SNP 86190 to 86790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,024 DEBUG Processing 336/600 atomic regions from SNP 100624 to 101224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,044 DEBUG Processing 672/677 atomic regions from SNP 201570 to 202170 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,062 DEBUG Processing 413/664 atomic regions from SNP 123893 to 124493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,194 DEBUG Processing 289/563 atomic regions from SNP 86490 to 87090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,237 DEBUG Processing 337/600 atomic regions from SNP 100924 to 101524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,255 DEBUG Processing 673/677 atomic regions from SNP 201870 to 202470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,289 DEBUG Processing 414/664 atomic regions from SNP 124193 to 124793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,422 DEBUG Processing 290/563 atomic regions from SNP 86790 to 87390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,464 DEBUG Processing 338/600 atomic regions from SNP 101224 to 101824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,478 DEBUG Processing 674/677 atomic regions from SNP 202170 to 202770 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,521 DEBUG Processing 415/664 atomic regions from SNP 124493 to 125093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,651 DEBUG Processing 291/563 atomic regions from SNP 87090 to 87690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,687 DEBUG Processing 339/600 atomic regions from SNP 101524 to 102124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,701 DEBUG Processing 675/677 atomic regions from SNP 202470 to 203070 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,756 DEBUG Processing 416/664 atomic regions from SNP 124793 to 125393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,881 DEBUG Processing 292/563 atomic regions from SNP 87390 to 87990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,914 DEBUG Processing 340/600 atomic regions from SNP 101824 to 102424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,948 DEBUG Processing 676/677 atomic regions from SNP 202770 to 203370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,987 DEBUG Processing 417/664 atomic regions from SNP 125093 to 125693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,108 DEBUG Processing 293/563 atomic regions from SNP 87690 to 88290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,139 DEBUG Processing 341/600 atomic regions from SNP 102124 to 102724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,195 DEBUG Processing 677/677 atomic regions from SNP 203070 to 203670 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,220 DEBUG Processing 418/664 atomic regions from SNP 125393 to 125993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,346 DEBUG Processing 294/563 atomic regions from SNP 87990 to 88590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,358 DEBUG Unique SNPs positions in subchromosome 1: 203671 2025-01-31 09:57:00,360 DEBUG Processing 342/600 atomic regions from SNP 102424 to 103024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,456 DEBUG Processing 419/664 atomic regions from SNP 125693 to 126293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,563 DEBUG Processing 295/563 atomic regions from SNP 88290 to 88890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,576 DEBUG Processing 343/600 atomic regions from SNP 102724 to 103324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,695 DEBUG Processing 420/664 atomic regions from SNP 125993 to 126593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,781 DEBUG Processing 296/563 atomic regions from SNP 88590 to 89190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,791 DEBUG Processing 344/600 atomic regions from SNP 103024 to 103624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,934 DEBUG Processing 421/664 atomic regions from SNP 126293 to 126893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,996 DEBUG Processing 297/563 atomic regions from SNP 88890 to 89490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,002 DEBUG Processing 345/600 atomic regions from SNP 103324 to 103924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,179 DEBUG Processing 422/664 atomic regions from SNP 126593 to 127193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,220 DEBUG Processing 298/563 atomic regions from SNP 89190 to 89790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,230 DEBUG Processing 346/600 atomic regions from SNP 103624 to 104224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,431 DEBUG Processing 423/664 atomic regions from SNP 126893 to 127493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,442 DEBUG Processing 299/563 atomic regions from SNP 89490 to 90090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,457 DEBUG Processing 347/600 atomic regions from SNP 103924 to 104524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,672 DEBUG Processing 300/563 atomic regions from SNP 89790 to 90390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,673 DEBUG Processing 424/664 atomic regions from SNP 127193 to 127793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,688 DEBUG Processing 348/600 atomic regions from SNP 104224 to 104824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,901 DEBUG Processing 301/563 atomic regions from SNP 90090 to 90690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,912 DEBUG Processing 425/664 atomic regions from SNP 127493 to 128093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,916 DEBUG Processing 349/600 atomic regions from SNP 104524 to 105124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,126 DEBUG Processing 302/563 atomic regions from SNP 90390 to 90990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,140 DEBUG Processing 350/600 atomic regions from SNP 104824 to 105424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,148 DEBUG Processing 426/664 atomic regions from SNP 127793 to 128393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,352 DEBUG Processing 303/563 atomic regions from SNP 90690 to 91290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,376 DEBUG Processing 351/600 atomic regions from SNP 105124 to 105724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,389 DEBUG Processing 427/664 atomic regions from SNP 128093 to 128693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,572 DEBUG Processing 304/563 atomic regions from SNP 90990 to 91590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,598 DEBUG Processing 352/600 atomic regions from SNP 105424 to 106024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,648 DEBUG Processing 428/664 atomic regions from SNP 128393 to 128993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,788 DEBUG Processing 305/563 atomic regions from SNP 91290 to 91890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,815 DEBUG Processing 353/600 atomic regions from SNP 105724 to 106324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,914 DEBUG Processing 429/664 atomic regions from SNP 128693 to 129293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,000 DEBUG Processing 306/563 atomic regions from SNP 91590 to 92190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,028 DEBUG Processing 354/600 atomic regions from SNP 106024 to 106624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,151 DEBUG Processing 430/664 atomic regions from SNP 128993 to 129593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,221 DEBUG Processing 307/563 atomic regions from SNP 91890 to 92490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,244 DEBUG Processing 355/600 atomic regions from SNP 106324 to 106924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,408 DEBUG Processing 431/664 atomic regions from SNP 129293 to 129893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,442 DEBUG Processing 308/563 atomic regions from SNP 92190 to 92790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,461 DEBUG Processing 356/600 atomic regions from SNP 106624 to 107224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,660 DEBUG Processing 432/664 atomic regions from SNP 129593 to 130193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,663 DEBUG Processing 309/563 atomic regions from SNP 92490 to 93090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,676 DEBUG Processing 357/600 atomic regions from SNP 106924 to 107524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,879 DEBUG Processing 310/563 atomic regions from SNP 92790 to 93390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,909 DEBUG Processing 358/600 atomic regions from SNP 107224 to 107824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,911 DEBUG Processing 433/664 atomic regions from SNP 129893 to 130493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,102 DEBUG Processing 311/563 atomic regions from SNP 93090 to 93690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,160 DEBUG Processing 434/664 atomic regions from SNP 130193 to 130793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,167 DEBUG Processing 359/600 atomic regions from SNP 107524 to 108124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,315 DEBUG Processing 312/563 atomic regions from SNP 93390 to 93990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,403 DEBUG Processing 360/600 atomic regions from SNP 107824 to 108424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,413 DEBUG Processing 435/664 atomic regions from SNP 130493 to 131093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,534 DEBUG Processing 313/563 atomic regions from SNP 93690 to 94290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,617 DEBUG Processing 361/600 atomic regions from SNP 108124 to 108724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,653 DEBUG Processing 436/664 atomic regions from SNP 130793 to 131393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,751 DEBUG Processing 314/563 atomic regions from SNP 93990 to 94590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,826 DEBUG Processing 362/600 atomic regions from SNP 108424 to 109024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,874 DEBUG Processing 437/664 atomic regions from SNP 131093 to 131693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,000 DEBUG Processing 315/563 atomic regions from SNP 94290 to 94890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,040 DEBUG Processing 363/600 atomic regions from SNP 108724 to 109324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,096 DEBUG Processing 438/664 atomic regions from SNP 131393 to 131993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,254 DEBUG Processing 316/563 atomic regions from SNP 94590 to 95190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,256 DEBUG Processing 364/600 atomic regions from SNP 109024 to 109624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,314 DEBUG Processing 439/664 atomic regions from SNP 131693 to 132293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,474 DEBUG Processing 365/600 atomic regions from SNP 109324 to 109924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,491 DEBUG Processing 317/563 atomic regions from SNP 94890 to 95490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,541 DEBUG Processing 440/664 atomic regions from SNP 131993 to 132593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,695 DEBUG Processing 366/600 atomic regions from SNP 109624 to 110224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,713 DEBUG Processing 318/563 atomic regions from SNP 95190 to 95790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,770 DEBUG Processing 441/664 atomic regions from SNP 132293 to 132893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,924 DEBUG Processing 367/600 atomic regions from SNP 109924 to 110524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,934 DEBUG Processing 319/563 atomic regions from SNP 95490 to 96090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,007 DEBUG Processing 442/664 atomic regions from SNP 132593 to 133193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,140 DEBUG Processing 368/600 atomic regions from SNP 110224 to 110824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,151 DEBUG Processing 320/563 atomic regions from SNP 95790 to 96390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,242 DEBUG Processing 443/664 atomic regions from SNP 132893 to 133493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,346 DEBUG Processing 369/600 atomic regions from SNP 110524 to 111124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,360 DEBUG Processing 321/563 atomic regions from SNP 96090 to 96690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,474 DEBUG Processing 444/664 atomic regions from SNP 133193 to 133793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,551 DEBUG Processing 370/600 atomic regions from SNP 110824 to 111424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,569 DEBUG Processing 322/563 atomic regions from SNP 96390 to 96990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,701 DEBUG Processing 445/664 atomic regions from SNP 133493 to 134093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,748 DEBUG Subchromosome time: 189.64229534904007, subchromosome SNPs: 203671 2025-01-31 09:57:06,748 DEBUG Estimated BADs: [0.72, 1.44, 14.35, 1.44, 14.35, 0.72, 14.35, 2.87, 0.48, 1.44, 2.87, 1.44, 4.31, 1.44, 2.87, 1.44, 2.87, 1.44, 4.31, 1.44, 0.72, 11.48, 0.48, 10.05, 1.44, 7.18, 0.72, 11.48, 0.48, 1.44, 2.87, 1.44, 2.87, 1.44, 0.72, 2.87] SNP counts: [9761, 21032, 232, 768, 564, 1769, 877, 2713, 4509, 37701, 1448, 8804, 2001, 4946, 3139, 4950, 2249, 12986, 1121, 5389, 2059, 98, 4596, 100, 1257, 294, 3383, 89, 12287, 11041, 6831, 19904, 2011, 4756, 7211, 795] SNP IDs counts: [9761, 21032, 232, 768, 564, 1769, 877, 2713, 4509, 37701, 1448, 8804, 2001, 4946, 3139, 4950, 2249, 12986, 1121, 5389, 2059, 98, 4596, 100, 1257, 294, 3383, 89, 12287, 11041, 6831, 19904, 2011, 4756, 7211, 795] Critical gap: 597059bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.78Mbp, 21.16Mbp, 21.28Mbp, 21.71Mbp, 22.06Mbp, 23.28Mbp, 23.77Mbp, 25.23Mbp, 27.81Mbp, 48.55Mbp, 49.30Mbp, 54.45Mbp, 55.50Mbp, 58.11Mbp, 59.77Mbp, 63.11Mbp, 64.31Mbp, 73.25Mbp, 73.83Mbp, 76.93Mbp, 78.16Mbp, 78.21Mbp, 80.88Mbp, 80.93Mbp, 81.63Mbp, 81.79Mbp, 83.69Mbp, 83.74Mbp, 90.90Mbp, 96.92Mbp, 100.65Mbp, 111.68Mbp, 112.74Mbp, 115.32Mbp, 119.43Mbp, 120.42Mbp] 2025-01-31 09:57:06,748 DEBUG chr13 time: 189.6428905200446 s 2025-01-31 09:57:06,762 DEBUG Processing 371/600 atomic regions from SNP 111124 to 111724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,781 DEBUG Processing 323/563 atomic regions from SNP 96690 to 97290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,881 DEBUG chr13: Fitting background model for 36 segments 2025-01-31 09:57:06,932 DEBUG Processing 446/664 atomic regions from SNP 133793 to 134393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,979 DEBUG Processing 372/600 atomic regions from SNP 111424 to 112024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,996 DEBUG Processing 324/563 atomic regions from SNP 96990 to 97590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,182 DEBUG Processing 447/664 atomic regions from SNP 134093 to 134693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,200 DEBUG Processing 373/600 atomic regions from SNP 111724 to 112324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,215 DEBUG Processing 325/563 atomic regions from SNP 97290 to 97890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,431 DEBUG Processing 448/664 atomic regions from SNP 134393 to 134993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,440 DEBUG Processing 326/563 atomic regions from SNP 97590 to 98190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,442 DEBUG Processing 374/600 atomic regions from SNP 112024 to 112624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,665 DEBUG Processing 327/563 atomic regions from SNP 97890 to 98490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,671 DEBUG Processing 375/600 atomic regions from SNP 112324 to 112924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,695 DEBUG Processing 449/664 atomic regions from SNP 134693 to 135293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,892 DEBUG Processing 328/563 atomic regions from SNP 98190 to 98790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,921 DEBUG Processing 376/600 atomic regions from SNP 112624 to 113224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,959 DEBUG Processing 450/664 atomic regions from SNP 134993 to 135593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,112 DEBUG Processing 329/563 atomic regions from SNP 98490 to 99090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,146 DEBUG Processing 377/600 atomic regions from SNP 112924 to 113524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,194 DEBUG Processing 451/664 atomic regions from SNP 135293 to 135893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,345 DEBUG Processing 330/563 atomic regions from SNP 98790 to 99390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,367 DEBUG Processing 378/600 atomic regions from SNP 113224 to 113824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,431 DEBUG Processing 452/664 atomic regions from SNP 135593 to 136193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,585 DEBUG Processing 331/563 atomic regions from SNP 99090 to 99690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,590 DEBUG Processing 379/600 atomic regions from SNP 113524 to 114124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,672 DEBUG Processing 453/664 atomic regions from SNP 135893 to 136493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,808 DEBUG Processing 332/563 atomic regions from SNP 99390 to 99990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,808 DEBUG Processing 380/600 atomic regions from SNP 113824 to 114424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,935 DEBUG Processing 454/664 atomic regions from SNP 136193 to 136793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,022 DEBUG Processing 381/600 atomic regions from SNP 114124 to 114724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,024 DEBUG Processing 333/563 atomic regions from SNP 99690 to 100290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,190 DEBUG Processing 455/664 atomic regions from SNP 136493 to 137093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,236 DEBUG Processing 382/600 atomic regions from SNP 114424 to 115024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,241 DEBUG Processing 334/563 atomic regions from SNP 99990 to 100590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,436 DEBUG Processing 456/664 atomic regions from SNP 136793 to 137393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,447 DEBUG Processing 383/600 atomic regions from SNP 114724 to 115324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,457 DEBUG Processing 335/563 atomic regions from SNP 100290 to 100890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,658 DEBUG Processing 384/600 atomic regions from SNP 115024 to 115624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,683 DEBUG Processing 336/563 atomic regions from SNP 100590 to 101190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,687 DEBUG Processing 457/664 atomic regions from SNP 137093 to 137693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,868 DEBUG Processing 385/600 atomic regions from SNP 115324 to 115924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,894 DEBUG Processing 337/563 atomic regions from SNP 100890 to 101490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,938 DEBUG Processing 458/664 atomic regions from SNP 137393 to 137993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,070 DEBUG Processing 386/600 atomic regions from SNP 115624 to 116224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,098 DEBUG Processing 338/563 atomic regions from SNP 101190 to 101790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,173 DEBUG Processing 459/664 atomic regions from SNP 137693 to 138293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,287 DEBUG Processing 387/600 atomic regions from SNP 115924 to 116524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,311 DEBUG Processing 339/563 atomic regions from SNP 101490 to 102090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,358 DEBUG Segmenting atomic regions: 2025-01-31 09:57:10,424 DEBUG Processing 460/664 atomic regions from SNP 137993 to 138593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,431 DEBUG Processing 1/533 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,494 DEBUG Processing 388/600 atomic regions from SNP 116224 to 116824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,519 DEBUG Processing 340/563 atomic regions from SNP 101790 to 102390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,633 DEBUG Processing 2/533 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,668 DEBUG Processing 461/664 atomic regions from SNP 138293 to 138893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,700 DEBUG Processing 389/600 atomic regions from SNP 116524 to 117124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,726 DEBUG Processing 341/563 atomic regions from SNP 102090 to 102690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,823 DEBUG Processing 3/533 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,889 DEBUG Processing 462/664 atomic regions from SNP 138593 to 139193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,906 DEBUG Processing 390/600 atomic regions from SNP 116824 to 117424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,936 DEBUG Processing 342/563 atomic regions from SNP 102390 to 102990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,014 DEBUG Processing 4/533 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,111 DEBUG Processing 463/664 atomic regions from SNP 138893 to 139493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,120 DEBUG Processing 391/600 atomic regions from SNP 117124 to 117724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,145 DEBUG Processing 343/563 atomic regions from SNP 102690 to 103290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,201 DEBUG Processing 5/533 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,334 DEBUG Processing 392/600 atomic regions from SNP 117424 to 118024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,337 DEBUG Processing 464/664 atomic regions from SNP 139193 to 139793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,360 DEBUG Processing 344/563 atomic regions from SNP 102990 to 103590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,386 DEBUG Processing 6/533 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,547 DEBUG Processing 393/600 atomic regions from SNP 117724 to 118324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,566 DEBUG Processing 465/664 atomic regions from SNP 139493 to 140093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,573 DEBUG Processing 345/563 atomic regions from SNP 103290 to 103890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,579 DEBUG Processing 7/533 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,753 DEBUG Processing 394/600 atomic regions from SNP 118024 to 118624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,773 DEBUG Processing 8/533 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,783 DEBUG Processing 346/563 atomic regions from SNP 103590 to 104190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,795 DEBUG Processing 466/664 atomic regions from SNP 139793 to 140393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,958 DEBUG Processing 395/600 atomic regions from SNP 118324 to 118924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,966 DEBUG Processing 9/533 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,991 DEBUG Processing 347/563 atomic regions from SNP 103890 to 104490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,015 DEBUG Processing 467/664 atomic regions from SNP 140093 to 140693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,155 DEBUG Processing 10/533 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,162 DEBUG Processing 396/600 atomic regions from SNP 118624 to 119224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,194 DEBUG Processing 348/563 atomic regions from SNP 104190 to 104790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,235 DEBUG Processing 468/664 atomic regions from SNP 140393 to 140993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,346 DEBUG Processing 11/533 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,368 DEBUG Processing 397/600 atomic regions from SNP 118924 to 119524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,399 DEBUG Processing 349/563 atomic regions from SNP 104490 to 105090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,450 DEBUG Processing 469/664 atomic regions from SNP 140693 to 141293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,536 DEBUG Processing 12/533 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,576 DEBUG Processing 398/600 atomic regions from SNP 119224 to 119824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,610 DEBUG Processing 350/563 atomic regions from SNP 104790 to 105390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,692 DEBUG Processing 470/664 atomic regions from SNP 140993 to 141593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,744 DEBUG Processing 13/533 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,787 DEBUG Processing 399/600 atomic regions from SNP 119524 to 120124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,819 DEBUG Processing 351/563 atomic regions from SNP 105090 to 105690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,940 DEBUG Processing 14/533 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,951 DEBUG Processing 471/664 atomic regions from SNP 141293 to 141893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,001 DEBUG Processing 400/600 atomic regions from SNP 119824 to 120424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,026 DEBUG Processing 352/563 atomic regions from SNP 105390 to 105990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,128 DEBUG Processing 15/533 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,195 DEBUG Processing 472/664 atomic regions from SNP 141593 to 142193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,213 DEBUG Processing 401/600 atomic regions from SNP 120124 to 120724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,240 DEBUG Processing 353/563 atomic regions from SNP 105690 to 106290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,336 DEBUG Processing 16/533 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,427 DEBUG Processing 402/600 atomic regions from SNP 120424 to 121024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,451 DEBUG Processing 473/664 atomic regions from SNP 141893 to 142493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,455 DEBUG Processing 354/563 atomic regions from SNP 105990 to 106590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,532 DEBUG Processing 17/533 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,637 DEBUG Processing 403/600 atomic regions from SNP 120724 to 121324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,668 DEBUG Processing 355/563 atomic regions from SNP 106290 to 106890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,700 DEBUG Processing 474/664 atomic regions from SNP 142193 to 142793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,748 DEBUG Processing 18/533 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,840 DEBUG Processing 404/600 atomic regions from SNP 121024 to 121624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,886 DEBUG Processing 356/563 atomic regions from SNP 106590 to 107190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,949 DEBUG Processing 475/664 atomic regions from SNP 142493 to 143093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,961 DEBUG Processing 19/533 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,046 DEBUG Processing 405/600 atomic regions from SNP 121324 to 121924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,092 DEBUG Processing 357/563 atomic regions from SNP 106890 to 107490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,151 DEBUG Processing 20/533 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,167 DEBUG Processing 476/664 atomic regions from SNP 142793 to 143393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,252 DEBUG Processing 406/600 atomic regions from SNP 121624 to 122224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,296 DEBUG Processing 358/563 atomic regions from SNP 107190 to 107790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,348 DEBUG Processing 21/533 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,376 DEBUG Processing 477/664 atomic regions from SNP 143093 to 143693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,457 DEBUG Processing 407/600 atomic regions from SNP 121924 to 122524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,501 DEBUG Processing 359/563 atomic regions from SNP 107490 to 108090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,555 DEBUG Processing 22/533 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,588 DEBUG Processing 478/664 atomic regions from SNP 143393 to 143993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,664 DEBUG Processing 408/600 atomic regions from SNP 122224 to 122824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,707 DEBUG Processing 360/563 atomic regions from SNP 107790 to 108390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,740 DEBUG Processing 23/533 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,796 DEBUG Processing 479/664 atomic regions from SNP 143693 to 144293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,865 DEBUG Processing 409/600 atomic regions from SNP 122524 to 123124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,908 DEBUG Processing 361/563 atomic regions from SNP 108090 to 108690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,932 DEBUG Processing 24/533 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,006 DEBUG Processing 480/664 atomic regions from SNP 143993 to 144593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,067 DEBUG Processing 410/600 atomic regions from SNP 122824 to 123424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,106 DEBUG Processing 362/563 atomic regions from SNP 108390 to 108990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,121 DEBUG Processing 25/533 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,217 DEBUG Processing 481/664 atomic regions from SNP 144293 to 144893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,302 DEBUG Processing 411/600 atomic regions from SNP 123124 to 123724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,308 DEBUG Processing 363/563 atomic regions from SNP 108690 to 109290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,314 DEBUG Processing 26/533 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,429 DEBUG Processing 482/664 atomic regions from SNP 144593 to 145193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,502 DEBUG Processing 364/563 atomic regions from SNP 108990 to 109590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,504 DEBUG Processing 27/533 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,536 DEBUG Processing 412/600 atomic regions from SNP 123424 to 124024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,643 DEBUG Processing 483/664 atomic regions from SNP 144893 to 145493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,699 DEBUG Processing 28/533 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,702 DEBUG Processing 365/563 atomic regions from SNP 109290 to 109890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,739 DEBUG Processing 413/600 atomic regions from SNP 123724 to 124324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,855 DEBUG Processing 484/664 atomic regions from SNP 145193 to 145793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,889 DEBUG Processing 29/533 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,903 DEBUG Processing 366/563 atomic regions from SNP 109590 to 110190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,962 DEBUG Processing 414/600 atomic regions from SNP 124024 to 124624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,069 DEBUG Processing 485/664 atomic regions from SNP 145493 to 146093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,076 DEBUG Processing 30/533 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,102 DEBUG Processing 367/563 atomic regions from SNP 109890 to 110490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,205 DEBUG Processing 415/600 atomic regions from SNP 124324 to 124924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,268 DEBUG Processing 31/533 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,287 DEBUG Processing 486/664 atomic regions from SNP 145793 to 146393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,306 DEBUG Processing 368/563 atomic regions from SNP 110190 to 110790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,436 DEBUG Processing 416/600 atomic regions from SNP 124624 to 125224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,459 DEBUG Processing 32/533 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,504 DEBUG Processing 487/664 atomic regions from SNP 146093 to 146693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,510 DEBUG Processing 369/563 atomic regions from SNP 110490 to 111090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,647 DEBUG Processing 417/600 atomic regions from SNP 124924 to 125524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,651 DEBUG Processing 33/533 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,711 DEBUG Processing 370/563 atomic regions from SNP 110790 to 111390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,720 DEBUG Processing 488/664 atomic regions from SNP 146393 to 146993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,840 DEBUG Processing 34/533 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,854 DEBUG Processing 418/600 atomic regions from SNP 125224 to 125824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,913 DEBUG Processing 371/563 atomic regions from SNP 111090 to 111690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,936 DEBUG Processing 489/664 atomic regions from SNP 146693 to 147293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,028 DEBUG Processing 35/533 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,060 DEBUG Processing 419/600 atomic regions from SNP 125524 to 126124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,116 DEBUG Processing 372/563 atomic regions from SNP 111390 to 111990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,145 DEBUG Processing 490/664 atomic regions from SNP 146993 to 147593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,214 DEBUG Processing 36/533 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,269 DEBUG Processing 420/600 atomic regions from SNP 125824 to 126424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,319 DEBUG Processing 373/563 atomic regions from SNP 111690 to 112290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,360 DEBUG Processing 491/664 atomic regions from SNP 147293 to 147893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,399 DEBUG Processing 37/533 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,491 DEBUG Processing 421/600 atomic regions from SNP 126124 to 126724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,519 DEBUG Processing 374/563 atomic regions from SNP 111990 to 112590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,575 DEBUG Processing 492/664 atomic regions from SNP 147593 to 148193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,580 DEBUG Processing 38/533 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,715 DEBUG Processing 422/600 atomic regions from SNP 126424 to 127024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,726 DEBUG Processing 375/563 atomic regions from SNP 112290 to 112890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,762 DEBUG Processing 39/533 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,784 DEBUG Processing 493/664 atomic regions from SNP 147893 to 148493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,927 DEBUG Processing 423/600 atomic regions from SNP 126724 to 127324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,932 DEBUG Processing 376/563 atomic regions from SNP 112590 to 113190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,950 DEBUG Processing 40/533 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,994 DEBUG Processing 494/664 atomic regions from SNP 148193 to 148793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,136 DEBUG Processing 424/600 atomic regions from SNP 127024 to 127624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,138 DEBUG Processing 377/563 atomic regions from SNP 112890 to 113490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,144 DEBUG Processing 41/533 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,209 DEBUG Processing 495/664 atomic regions from SNP 148493 to 149093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,340 DEBUG Processing 42/533 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,347 DEBUG Processing 378/563 atomic regions from SNP 113190 to 113790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,350 DEBUG Processing 425/600 atomic regions from SNP 127324 to 127924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,455 DEBUG Processing 496/664 atomic regions from SNP 148793 to 149393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,534 DEBUG Processing 43/533 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,555 DEBUG Processing 379/563 atomic regions from SNP 113490 to 114090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,563 DEBUG Processing 426/600 atomic regions from SNP 127624 to 128224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,714 DEBUG Processing 497/664 atomic regions from SNP 149093 to 149693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,725 DEBUG Processing 44/533 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,759 DEBUG Processing 380/563 atomic regions from SNP 113790 to 114390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,794 DEBUG Processing 427/600 atomic regions from SNP 127924 to 128524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,911 DEBUG Processing 45/533 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,938 DEBUG Processing 498/664 atomic regions from SNP 149393 to 149993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,963 DEBUG Processing 381/563 atomic regions from SNP 114090 to 114690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,043 DEBUG Processing 428/600 atomic regions from SNP 128224 to 128824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,097 DEBUG Processing 46/533 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,165 DEBUG Processing 499/664 atomic regions from SNP 149693 to 150293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,166 DEBUG Processing 382/563 atomic regions from SNP 114390 to 114990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,278 DEBUG Processing 47/533 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,289 DEBUG Processing 429/600 atomic regions from SNP 128524 to 129124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,375 DEBUG Processing 383/563 atomic regions from SNP 114690 to 115290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,392 DEBUG Processing 500/664 atomic regions from SNP 149993 to 150593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,463 DEBUG Processing 48/533 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,537 DEBUG Processing 430/600 atomic regions from SNP 128824 to 129424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,578 DEBUG Processing 384/563 atomic regions from SNP 114990 to 115590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,619 DEBUG Processing 501/664 atomic regions from SNP 150293 to 150893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,650 DEBUG Processing 49/533 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,782 DEBUG Processing 385/563 atomic regions from SNP 115290 to 115890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,787 DEBUG Processing 431/600 atomic regions from SNP 129124 to 129724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,840 DEBUG Processing 50/533 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,845 DEBUG Processing 502/664 atomic regions from SNP 150593 to 151193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,991 DEBUG Processing 386/563 atomic regions from SNP 115590 to 116190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,036 DEBUG Processing 432/600 atomic regions from SNP 129424 to 130024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,040 DEBUG Processing 51/533 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,073 DEBUG Processing 503/664 atomic regions from SNP 150893 to 151493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,198 DEBUG Processing 387/563 atomic regions from SNP 115890 to 116490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,236 DEBUG Processing 52/533 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,282 DEBUG Processing 433/600 atomic regions from SNP 129724 to 130324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,296 DEBUG Processing 504/664 atomic regions from SNP 151193 to 151793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,407 DEBUG Processing 388/563 atomic regions from SNP 116190 to 116790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,435 DEBUG Processing 53/533 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,524 DEBUG Processing 505/664 atomic regions from SNP 151493 to 152093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,533 DEBUG Processing 434/600 atomic regions from SNP 130024 to 130624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,614 DEBUG Processing 389/563 atomic regions from SNP 116490 to 117090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,624 DEBUG Processing 54/533 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,742 DEBUG Processing 506/664 atomic regions from SNP 151793 to 152393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,777 DEBUG Processing 435/600 atomic regions from SNP 130324 to 130924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,820 DEBUG Processing 55/533 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,822 DEBUG Processing 390/563 atomic regions from SNP 116790 to 117390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,968 DEBUG Processing 507/664 atomic regions from SNP 152093 to 152693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,016 DEBUG Processing 436/600 atomic regions from SNP 130624 to 131224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,027 DEBUG Processing 56/533 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,029 DEBUG Processing 391/563 atomic regions from SNP 117090 to 117690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,198 DEBUG Processing 508/664 atomic regions from SNP 152393 to 152993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,235 DEBUG Processing 392/563 atomic regions from SNP 117390 to 117990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,240 DEBUG Processing 57/533 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,263 DEBUG Processing 437/600 atomic regions from SNP 130924 to 131524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,429 DEBUG Processing 509/664 atomic regions from SNP 152693 to 153293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,439 DEBUG Processing 58/533 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,447 DEBUG Processing 393/563 atomic regions from SNP 117690 to 118290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,510 DEBUG Processing 438/600 atomic regions from SNP 131224 to 131824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,639 DEBUG Processing 59/533 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,662 DEBUG Processing 394/563 atomic regions from SNP 117990 to 118590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,666 DEBUG Processing 510/664 atomic regions from SNP 152993 to 153593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,742 DEBUG Processing 439/600 atomic regions from SNP 131524 to 132124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,836 DEBUG Processing 60/533 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,877 DEBUG Processing 395/563 atomic regions from SNP 118290 to 118890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,897 DEBUG Processing 511/664 atomic regions from SNP 153293 to 153893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,996 DEBUG Processing 440/600 atomic regions from SNP 131824 to 132424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,044 DEBUG Processing 61/533 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,087 DEBUG Processing 396/563 atomic regions from SNP 118590 to 119190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,128 DEBUG Processing 512/664 atomic regions from SNP 153593 to 154193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,240 DEBUG Processing 62/533 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,246 DEBUG Processing 441/600 atomic regions from SNP 132124 to 132724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,297 DEBUG Processing 397/563 atomic regions from SNP 118890 to 119490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,355 DEBUG Processing 513/664 atomic regions from SNP 153893 to 154493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,442 DEBUG Processing 63/533 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,496 DEBUG Processing 442/600 atomic regions from SNP 132424 to 133024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,525 DEBUG Processing 398/563 atomic regions from SNP 119190 to 119790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,584 DEBUG Processing 514/664 atomic regions from SNP 154193 to 154793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,642 DEBUG Processing 64/533 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,735 DEBUG Processing 399/563 atomic regions from SNP 119490 to 120090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,747 DEBUG Processing 443/600 atomic regions from SNP 132724 to 133324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,803 DEBUG Processing 515/664 atomic regions from SNP 154493 to 155093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,833 DEBUG Processing 65/533 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,943 DEBUG Processing 400/563 atomic regions from SNP 119790 to 120390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,989 DEBUG Processing 444/600 atomic regions from SNP 133024 to 133624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,025 DEBUG Processing 516/664 atomic regions from SNP 154793 to 155393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,037 DEBUG Processing 66/533 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,151 DEBUG Processing 401/563 atomic regions from SNP 120090 to 120690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,231 DEBUG Processing 445/600 atomic regions from SNP 133324 to 133924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,232 DEBUG Processing 67/533 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,253 DEBUG Processing 517/664 atomic regions from SNP 155093 to 155693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,361 DEBUG Processing 402/563 atomic regions from SNP 120390 to 120990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,436 DEBUG Processing 68/533 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,476 DEBUG Processing 446/600 atomic regions from SNP 133624 to 134224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,484 DEBUG Processing 518/664 atomic regions from SNP 155393 to 155993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,567 DEBUG Processing 403/563 atomic regions from SNP 120690 to 121290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,632 DEBUG Processing 69/533 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,722 DEBUG Processing 519/664 atomic regions from SNP 155693 to 156293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,736 DEBUG Processing 447/600 atomic regions from SNP 133924 to 134524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,782 DEBUG Processing 404/563 atomic regions from SNP 120990 to 121590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,830 DEBUG Processing 70/533 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,961 DEBUG Processing 520/664 atomic regions from SNP 155993 to 156593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,001 DEBUG Processing 405/563 atomic regions from SNP 121290 to 121890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,003 DEBUG Processing 448/600 atomic regions from SNP 134224 to 134824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,032 DEBUG Processing 71/533 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,198 DEBUG Processing 521/664 atomic regions from SNP 156293 to 156893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,216 DEBUG Processing 406/563 atomic regions from SNP 121590 to 122190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,229 DEBUG Processing 72/533 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,264 DEBUG Processing 449/600 atomic regions from SNP 134524 to 135124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,433 DEBUG Processing 73/533 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,436 DEBUG Processing 407/563 atomic regions from SNP 121890 to 122490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,438 DEBUG Processing 522/664 atomic regions from SNP 156593 to 157193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,519 DEBUG Processing 450/600 atomic regions from SNP 134824 to 135424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,638 DEBUG Processing 74/533 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,657 DEBUG Processing 408/563 atomic regions from SNP 122190 to 122790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,673 DEBUG Processing 523/664 atomic regions from SNP 156893 to 157493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,765 DEBUG Processing 451/600 atomic regions from SNP 135124 to 135724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,839 DEBUG Processing 75/533 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,871 DEBUG Processing 409/563 atomic regions from SNP 122490 to 123090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,908 DEBUG Processing 524/664 atomic regions from SNP 157193 to 157793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,011 DEBUG Processing 452/600 atomic regions from SNP 135424 to 136024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,036 DEBUG Processing 76/533 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,088 DEBUG Processing 410/563 atomic regions from SNP 122790 to 123390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,148 DEBUG Processing 525/664 atomic regions from SNP 157493 to 158093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,234 DEBUG Processing 77/533 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,287 DEBUG Processing 453/600 atomic regions from SNP 135724 to 136324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,306 DEBUG Processing 411/563 atomic regions from SNP 123090 to 123690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,387 DEBUG Processing 526/664 atomic regions from SNP 157793 to 158393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,440 DEBUG Processing 78/533 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,521 DEBUG Processing 412/563 atomic regions from SNP 123390 to 123990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,541 DEBUG Processing 454/600 atomic regions from SNP 136024 to 136624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,619 DEBUG Processing 527/664 atomic regions from SNP 158093 to 158693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,672 DEBUG Processing 79/533 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,734 DEBUG Processing 413/563 atomic regions from SNP 123690 to 124290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,794 DEBUG Processing 455/600 atomic regions from SNP 136324 to 136924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,853 DEBUG Processing 528/664 atomic regions from SNP 158393 to 158993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,901 DEBUG Processing 80/533 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,947 DEBUG Processing 414/563 atomic regions from SNP 123990 to 124590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,037 DEBUG Processing 456/600 atomic regions from SNP 136624 to 137224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,087 DEBUG Processing 529/664 atomic regions from SNP 158693 to 159293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,107 DEBUG Processing 81/533 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,166 DEBUG Processing 415/563 atomic regions from SNP 124290 to 124890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,275 DEBUG Processing 457/600 atomic regions from SNP 136924 to 137524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,315 DEBUG Processing 82/533 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,321 DEBUG Processing 530/664 atomic regions from SNP 158993 to 159593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,385 DEBUG Processing 416/563 atomic regions from SNP 124590 to 125190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,519 DEBUG Processing 83/533 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,524 DEBUG Processing 458/600 atomic regions from SNP 137224 to 137824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,556 DEBUG Processing 531/664 atomic regions from SNP 159293 to 159893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,607 DEBUG Processing 417/563 atomic regions from SNP 124890 to 125490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,718 DEBUG Processing 84/533 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,779 DEBUG Processing 459/600 atomic regions from SNP 137524 to 138124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,789 DEBUG Processing 532/664 atomic regions from SNP 159593 to 160193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,830 DEBUG Processing 418/563 atomic regions from SNP 125190 to 125790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,929 DEBUG Processing 85/533 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,034 DEBUG Processing 533/664 atomic regions from SNP 159893 to 160493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,036 DEBUG Processing 460/600 atomic regions from SNP 137824 to 138424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,064 DEBUG Processing 419/563 atomic regions from SNP 125490 to 126090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,142 DEBUG Processing 86/533 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,274 DEBUG Processing 534/664 atomic regions from SNP 160193 to 160793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,276 DEBUG Processing 420/563 atomic regions from SNP 125790 to 126390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,285 DEBUG Processing 461/600 atomic regions from SNP 138124 to 138724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,359 DEBUG Processing 87/533 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,490 DEBUG Processing 421/563 atomic regions from SNP 126090 to 126690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,510 DEBUG Processing 535/664 atomic regions from SNP 160493 to 161093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,531 DEBUG Processing 462/600 atomic regions from SNP 138424 to 139024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,572 DEBUG Processing 88/533 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,703 DEBUG Processing 422/563 atomic regions from SNP 126390 to 126990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,746 DEBUG Processing 536/664 atomic regions from SNP 160793 to 161393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,781 DEBUG Processing 89/533 atomic regions from SNP 26488 to 27089 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,794 DEBUG Processing 463/600 atomic regions from SNP 138724 to 139324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,917 DEBUG Processing 423/563 atomic regions from SNP 126690 to 127290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,984 DEBUG Processing 90/533 atomic regions from SNP 26789 to 27390 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,991 DEBUG Processing 537/664 atomic regions from SNP 161093 to 161693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,057 DEBUG Processing 464/600 atomic regions from SNP 139024 to 139624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,133 DEBUG Processing 424/563 atomic regions from SNP 126990 to 127590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,186 DEBUG Processing 91/533 atomic regions from SNP 27090 to 27691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,245 DEBUG Processing 538/664 atomic regions from SNP 161393 to 161993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,317 DEBUG Processing 465/600 atomic regions from SNP 139324 to 139924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,352 DEBUG Processing 425/563 atomic regions from SNP 127290 to 127890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,391 DEBUG Processing 92/533 atomic regions from SNP 27391 to 27992 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,484 DEBUG Processing 539/664 atomic regions from SNP 161693 to 162293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,573 DEBUG Processing 426/563 atomic regions from SNP 127590 to 128190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,584 DEBUG Processing 466/600 atomic regions from SNP 139624 to 140224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,594 DEBUG Processing 93/533 atomic regions from SNP 27692 to 28293 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,723 DEBUG Processing 540/664 atomic regions from SNP 161993 to 162593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,792 DEBUG Processing 427/563 atomic regions from SNP 127890 to 128490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,799 DEBUG Processing 94/533 atomic regions from SNP 27993 to 28594 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,846 DEBUG Processing 467/600 atomic regions from SNP 139924 to 140524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,977 DEBUG Processing 541/664 atomic regions from SNP 162293 to 162893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,005 DEBUG Processing 95/533 atomic regions from SNP 28294 to 28895 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,009 DEBUG Processing 428/563 atomic regions from SNP 128190 to 128790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,098 DEBUG Processing 468/600 atomic regions from SNP 140224 to 140824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,213 DEBUG Processing 96/533 atomic regions from SNP 28595 to 29196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,231 DEBUG Processing 429/563 atomic regions from SNP 128490 to 129090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,238 DEBUG Processing 542/664 atomic regions from SNP 162593 to 163193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,346 DEBUG Processing 469/600 atomic regions from SNP 140524 to 141124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,422 DEBUG Processing 97/533 atomic regions from SNP 28896 to 29497 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,452 DEBUG Processing 430/563 atomic regions from SNP 128790 to 129390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,475 DEBUG Processing 543/664 atomic regions from SNP 162893 to 163493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,564 DEBUG Processing 470/600 atomic regions from SNP 140824 to 141424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,626 DEBUG Processing 98/533 atomic regions from SNP 29197 to 29798 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,667 DEBUG Processing 431/563 atomic regions from SNP 129090 to 129690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,704 DEBUG Processing 544/664 atomic regions from SNP 163193 to 163793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,785 DEBUG Processing 471/600 atomic regions from SNP 141124 to 141724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,833 DEBUG Processing 99/533 atomic regions from SNP 29498 to 30099 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,882 DEBUG Processing 432/563 atomic regions from SNP 129390 to 129990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,950 DEBUG Processing 545/664 atomic regions from SNP 163493 to 164093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,021 DEBUG Processing 472/600 atomic regions from SNP 141424 to 142024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,039 DEBUG Processing 100/533 atomic regions from SNP 29799 to 30400 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,099 DEBUG Processing 433/563 atomic regions from SNP 129690 to 130290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,183 DEBUG Processing 546/664 atomic regions from SNP 163793 to 164393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,241 DEBUG Processing 101/533 atomic regions from SNP 30100 to 30701 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,268 DEBUG Processing 473/600 atomic regions from SNP 141724 to 142324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,314 DEBUG Processing 434/563 atomic regions from SNP 129990 to 130590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,435 DEBUG Processing 547/664 atomic regions from SNP 164093 to 164693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,442 DEBUG Processing 102/533 atomic regions from SNP 30401 to 31002 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,515 DEBUG Processing 474/600 atomic regions from SNP 142024 to 142624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,537 DEBUG Processing 435/563 atomic regions from SNP 130290 to 130890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,650 DEBUG Processing 103/533 atomic regions from SNP 30702 to 31303 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,678 DEBUG Processing 548/664 atomic regions from SNP 164393 to 164993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,748 DEBUG Processing 436/563 atomic regions from SNP 130590 to 131190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,781 DEBUG Processing 475/600 atomic regions from SNP 142324 to 142924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,850 DEBUG Processing 104/533 atomic regions from SNP 31003 to 31604 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,908 DEBUG Processing 549/664 atomic regions from SNP 164693 to 165293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,965 DEBUG Processing 437/563 atomic regions from SNP 130890 to 131490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,037 DEBUG Processing 476/600 atomic regions from SNP 142624 to 143224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,046 DEBUG Processing 105/533 atomic regions from SNP 31304 to 31905 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,158 DEBUG Processing 550/664 atomic regions from SNP 164993 to 165593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,180 DEBUG Processing 438/563 atomic regions from SNP 131190 to 131790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,242 DEBUG Processing 106/533 atomic regions from SNP 31605 to 32206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,275 DEBUG Processing 477/600 atomic regions from SNP 142924 to 143524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,395 DEBUG Processing 439/563 atomic regions from SNP 131490 to 132090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,408 DEBUG Processing 551/664 atomic regions from SNP 165293 to 165893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,435 DEBUG Processing 107/533 atomic regions from SNP 31906 to 32507 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,497 DEBUG Processing 478/600 atomic regions from SNP 143224 to 143824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,612 DEBUG Processing 440/563 atomic regions from SNP 131790 to 132390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,633 DEBUG Processing 108/533 atomic regions from SNP 32207 to 32808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,656 DEBUG Processing 552/664 atomic regions from SNP 165593 to 166193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,721 DEBUG Processing 479/600 atomic regions from SNP 143524 to 144124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,831 DEBUG Processing 441/563 atomic regions from SNP 132090 to 132690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,836 DEBUG Processing 109/533 atomic regions from SNP 32508 to 33109 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,883 DEBUG Processing 553/664 atomic regions from SNP 165893 to 166493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,979 DEBUG Processing 480/600 atomic regions from SNP 143824 to 144424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,049 DEBUG Processing 442/563 atomic regions from SNP 132390 to 132990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,067 DEBUG Processing 110/533 atomic regions from SNP 32809 to 33410 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,108 DEBUG Processing 554/664 atomic regions from SNP 166193 to 166793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,227 DEBUG Processing 481/600 atomic regions from SNP 144124 to 144724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,265 DEBUG Processing 443/563 atomic regions from SNP 132690 to 133290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,303 DEBUG Processing 111/533 atomic regions from SNP 33110 to 33711 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,334 DEBUG Processing 555/664 atomic regions from SNP 166493 to 167093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,470 DEBUG Processing 482/600 atomic regions from SNP 144424 to 145024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,481 DEBUG Processing 444/563 atomic regions from SNP 132990 to 133590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,521 DEBUG Processing 112/533 atomic regions from SNP 33411 to 34012 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,580 DEBUG Processing 556/664 atomic regions from SNP 166793 to 167393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,716 DEBUG Processing 483/600 atomic regions from SNP 144724 to 145324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,718 DEBUG Processing 445/563 atomic regions from SNP 133290 to 133890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,743 DEBUG Processing 113/533 atomic regions from SNP 33712 to 34313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,814 DEBUG Processing 557/664 atomic regions from SNP 167093 to 167693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,932 DEBUG Processing 446/563 atomic regions from SNP 133590 to 134190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,954 DEBUG Processing 484/600 atomic regions from SNP 145024 to 145624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,973 DEBUG Processing 114/533 atomic regions from SNP 34013 to 34614 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,041 DEBUG Processing 558/664 atomic regions from SNP 167393 to 167993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,149 DEBUG Processing 447/563 atomic regions from SNP 133890 to 134490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,188 DEBUG Processing 485/600 atomic regions from SNP 145324 to 145924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,207 DEBUG Processing 115/533 atomic regions from SNP 34314 to 34915 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,279 DEBUG Processing 559/664 atomic regions from SNP 167693 to 168293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,367 DEBUG Processing 448/563 atomic regions from SNP 134190 to 134790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,410 DEBUG Processing 486/600 atomic regions from SNP 145624 to 146224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,444 DEBUG Processing 116/533 atomic regions from SNP 34615 to 35216 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,531 DEBUG Processing 560/664 atomic regions from SNP 167993 to 168593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,581 DEBUG Processing 449/563 atomic regions from SNP 134490 to 135090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,640 DEBUG Processing 487/600 atomic regions from SNP 145924 to 146524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,679 DEBUG Processing 117/533 atomic regions from SNP 34916 to 35517 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,785 DEBUG Processing 561/664 atomic regions from SNP 168293 to 168893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,794 DEBUG Processing 450/563 atomic regions from SNP 134790 to 135390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,868 DEBUG Processing 488/600 atomic regions from SNP 146224 to 146824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,909 DEBUG Processing 118/533 atomic regions from SNP 35217 to 35818 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,012 DEBUG Processing 451/563 atomic regions from SNP 135090 to 135690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,043 DEBUG Processing 562/664 atomic regions from SNP 168593 to 169193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,111 DEBUG Processing 489/600 atomic regions from SNP 146524 to 147124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,137 DEBUG Processing 119/533 atomic regions from SNP 35518 to 36119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,223 DEBUG Processing 452/563 atomic regions from SNP 135390 to 135990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,282 DEBUG Processing 563/664 atomic regions from SNP 168893 to 169493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,359 DEBUG Processing 490/600 atomic regions from SNP 146824 to 147424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,366 DEBUG Processing 120/533 atomic regions from SNP 35819 to 36420 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,449 DEBUG Processing 453/563 atomic regions from SNP 135690 to 136290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,505 DEBUG Processing 564/664 atomic regions from SNP 169193 to 169793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,598 DEBUG Processing 121/533 atomic regions from SNP 36120 to 36721 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,602 DEBUG Processing 491/600 atomic regions from SNP 147124 to 147724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,665 DEBUG Processing 454/563 atomic regions from SNP 135990 to 136590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,726 DEBUG Processing 565/664 atomic regions from SNP 169493 to 170093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,819 DEBUG Processing 122/533 atomic regions from SNP 36421 to 37022 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,830 DEBUG Processing 492/600 atomic regions from SNP 147424 to 148024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,883 DEBUG Processing 455/563 atomic regions from SNP 136290 to 136890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,972 DEBUG Processing 566/664 atomic regions from SNP 169793 to 170393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,054 DEBUG Processing 123/533 atomic regions from SNP 36722 to 37323 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,065 DEBUG Processing 493/600 atomic regions from SNP 147724 to 148324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,098 DEBUG Processing 456/563 atomic regions from SNP 136590 to 137190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,217 DEBUG Processing 567/664 atomic regions from SNP 170093 to 170693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,294 DEBUG Processing 494/600 atomic regions from SNP 148024 to 148624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,294 DEBUG Processing 124/533 atomic regions from SNP 37023 to 37624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,313 DEBUG Processing 457/563 atomic regions from SNP 136890 to 137490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,443 DEBUG Processing 568/664 atomic regions from SNP 170393 to 170993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,510 DEBUG Processing 495/600 atomic regions from SNP 148324 to 148924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,529 DEBUG Processing 458/563 atomic regions from SNP 137190 to 137790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,538 DEBUG Processing 125/533 atomic regions from SNP 37324 to 37925 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,670 DEBUG Processing 569/664 atomic regions from SNP 170693 to 171293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,726 DEBUG Processing 496/600 atomic regions from SNP 148624 to 149224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,744 DEBUG Processing 459/563 atomic regions from SNP 137490 to 138090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,768 DEBUG Processing 126/533 atomic regions from SNP 37625 to 38226 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,901 DEBUG Processing 570/664 atomic regions from SNP 170993 to 171593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,943 DEBUG Processing 497/600 atomic regions from SNP 148924 to 149524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,964 DEBUG Processing 460/563 atomic regions from SNP 137790 to 138390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,996 DEBUG Processing 127/533 atomic regions from SNP 37926 to 38527 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,144 DEBUG Processing 571/664 atomic regions from SNP 171293 to 171893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,173 DEBUG Processing 498/600 atomic regions from SNP 149224 to 149824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,194 DEBUG Processing 461/563 atomic regions from SNP 138090 to 138690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,218 DEBUG Processing 128/533 atomic regions from SNP 38227 to 38828 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,389 DEBUG Processing 572/664 atomic regions from SNP 171593 to 172193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,400 DEBUG Processing 499/600 atomic regions from SNP 149524 to 150124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,416 DEBUG Processing 462/563 atomic regions from SNP 138390 to 138990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,443 DEBUG Processing 129/533 atomic regions from SNP 38528 to 39129 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,628 DEBUG Processing 573/664 atomic regions from SNP 171893 to 172493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,634 DEBUG Processing 500/600 atomic regions from SNP 149824 to 150424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,644 DEBUG Processing 463/563 atomic regions from SNP 138690 to 139290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,678 DEBUG Processing 130/533 atomic regions from SNP 38829 to 39430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,867 DEBUG Processing 501/600 atomic regions from SNP 150124 to 150724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,871 DEBUG Processing 464/563 atomic regions from SNP 138990 to 139590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,886 DEBUG Processing 574/664 atomic regions from SNP 172193 to 172793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,918 DEBUG Processing 131/533 atomic regions from SNP 39130 to 39731 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,087 DEBUG Processing 502/600 atomic regions from SNP 150424 to 151024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,088 DEBUG Processing 465/563 atomic regions from SNP 139290 to 139890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,139 DEBUG Processing 575/664 atomic regions from SNP 172493 to 173093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,154 DEBUG Processing 132/533 atomic regions from SNP 39431 to 40032 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,303 DEBUG Processing 466/563 atomic regions from SNP 139590 to 140190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,304 DEBUG Processing 503/600 atomic regions from SNP 150724 to 151324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,393 DEBUG Processing 133/533 atomic regions from SNP 39732 to 40333 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,394 DEBUG Processing 576/664 atomic regions from SNP 172793 to 173393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,507 DEBUG Processing 504/600 atomic regions from SNP 151024 to 151624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,515 DEBUG Processing 467/563 atomic regions from SNP 139890 to 140490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,603 DEBUG Processing 134/533 atomic regions from SNP 40033 to 40634 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,626 DEBUG Processing 577/664 atomic regions from SNP 173093 to 173693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,718 DEBUG Processing 505/600 atomic regions from SNP 151324 to 151924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,727 DEBUG Processing 468/563 atomic regions from SNP 140190 to 140790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,838 DEBUG Processing 135/533 atomic regions from SNP 40334 to 40935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,861 DEBUG Processing 578/664 atomic regions from SNP 173393 to 173993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,937 DEBUG Processing 506/600 atomic regions from SNP 151624 to 152224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,943 DEBUG Processing 469/563 atomic regions from SNP 140490 to 141090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,075 DEBUG Processing 136/533 atomic regions from SNP 40635 to 41236 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,093 DEBUG Processing 579/664 atomic regions from SNP 173693 to 174293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,155 DEBUG Processing 507/600 atomic regions from SNP 151924 to 152524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,162 DEBUG Processing 470/563 atomic regions from SNP 140790 to 141390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,306 DEBUG Processing 137/533 atomic regions from SNP 40936 to 41537 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,344 DEBUG Processing 580/664 atomic regions from SNP 173993 to 174593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,383 DEBUG Processing 471/563 atomic regions from SNP 141090 to 141690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,390 DEBUG Processing 508/600 atomic regions from SNP 152224 to 152824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,519 DEBUG Processing 138/533 atomic regions from SNP 41237 to 41838 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,589 DEBUG Processing 581/664 atomic regions from SNP 174293 to 174893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,603 DEBUG Processing 472/563 atomic regions from SNP 141390 to 141990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,644 DEBUG Processing 509/600 atomic regions from SNP 152524 to 153124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,749 DEBUG Processing 139/533 atomic regions from SNP 41538 to 42139 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,822 DEBUG Processing 473/563 atomic regions from SNP 141690 to 142290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,849 DEBUG Processing 582/664 atomic regions from SNP 174593 to 175193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,898 DEBUG Processing 510/600 atomic regions from SNP 152824 to 153424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,984 DEBUG Processing 140/533 atomic regions from SNP 41839 to 42440 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,035 DEBUG Processing 474/563 atomic regions from SNP 141990 to 142590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,079 DEBUG Processing 583/664 atomic regions from SNP 174893 to 175493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,151 DEBUG Processing 511/600 atomic regions from SNP 153124 to 153724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,208 DEBUG Processing 141/533 atomic regions from SNP 42140 to 42741 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,260 DEBUG Processing 475/563 atomic regions from SNP 142290 to 142890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,304 DEBUG Processing 584/664 atomic regions from SNP 175193 to 175793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,404 DEBUG Processing 512/600 atomic regions from SNP 153424 to 154024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,438 DEBUG Processing 142/533 atomic regions from SNP 42441 to 43042 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,483 DEBUG Processing 476/563 atomic regions from SNP 142590 to 143190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,533 DEBUG Processing 585/664 atomic regions from SNP 175493 to 176093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,647 DEBUG Processing 513/600 atomic regions from SNP 153724 to 154324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,678 DEBUG Processing 143/533 atomic regions from SNP 42742 to 43343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,707 DEBUG Processing 477/563 atomic regions from SNP 142890 to 143490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,763 DEBUG Processing 586/664 atomic regions from SNP 175793 to 176393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,866 DEBUG Processing 514/600 atomic regions from SNP 154024 to 154624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,917 DEBUG Processing 144/533 atomic regions from SNP 43043 to 43644 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,931 DEBUG Processing 478/563 atomic regions from SNP 143190 to 143790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,000 DEBUG Processing 587/664 atomic regions from SNP 176093 to 176693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,078 DEBUG Processing 515/600 atomic regions from SNP 154324 to 154924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,155 DEBUG Processing 145/533 atomic regions from SNP 43344 to 43945 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,158 DEBUG Processing 479/563 atomic regions from SNP 143490 to 144090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,229 DEBUG Processing 588/664 atomic regions from SNP 176393 to 176993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,296 DEBUG Processing 516/600 atomic regions from SNP 154624 to 155224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,376 DEBUG Processing 480/563 atomic regions from SNP 143790 to 144390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,385 DEBUG Processing 146/533 atomic regions from SNP 43645 to 44246 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,453 DEBUG Processing 589/664 atomic regions from SNP 176693 to 177293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,516 DEBUG Processing 517/600 atomic regions from SNP 154924 to 155524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,602 DEBUG Processing 481/563 atomic regions from SNP 144090 to 144690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,626 DEBUG Processing 147/533 atomic regions from SNP 43946 to 44547 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,688 DEBUG Processing 590/664 atomic regions from SNP 176993 to 177593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,740 DEBUG Processing 518/600 atomic regions from SNP 155224 to 155824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,824 DEBUG Processing 482/563 atomic regions from SNP 144390 to 144990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,876 DEBUG Processing 148/533 atomic regions from SNP 44247 to 44848 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,918 DEBUG Processing 591/664 atomic regions from SNP 177293 to 177893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,959 DEBUG Processing 519/600 atomic regions from SNP 155524 to 156124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,041 DEBUG Processing 483/563 atomic regions from SNP 144690 to 145290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,102 DEBUG Processing 149/533 atomic regions from SNP 44548 to 45149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,151 DEBUG Processing 592/664 atomic regions from SNP 177593 to 178193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,178 DEBUG Processing 520/600 atomic regions from SNP 155824 to 156424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,257 DEBUG Processing 484/563 atomic regions from SNP 144990 to 145590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,317 DEBUG Processing 150/533 atomic regions from SNP 44849 to 45450 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,386 DEBUG Processing 593/664 atomic regions from SNP 177893 to 178493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,401 DEBUG Processing 521/600 atomic regions from SNP 156124 to 156724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,473 DEBUG Processing 485/563 atomic regions from SNP 145290 to 145890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,527 DEBUG Processing 151/533 atomic regions from SNP 45150 to 45751 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,620 DEBUG Processing 594/664 atomic regions from SNP 178193 to 178793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,622 DEBUG Processing 522/600 atomic regions from SNP 156424 to 157024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,685 DEBUG Processing 486/563 atomic regions from SNP 145590 to 146190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,740 DEBUG Processing 152/533 atomic regions from SNP 45451 to 46052 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,842 DEBUG Processing 523/600 atomic regions from SNP 156724 to 157324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,851 DEBUG Processing 595/664 atomic regions from SNP 178493 to 179093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,898 DEBUG Processing 487/563 atomic regions from SNP 145890 to 146490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,946 DEBUG Processing 153/533 atomic regions from SNP 45752 to 46353 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,063 DEBUG Processing 524/600 atomic regions from SNP 157024 to 157624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,085 DEBUG Processing 596/664 atomic regions from SNP 178793 to 179393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,112 DEBUG Processing 488/563 atomic regions from SNP 146190 to 146790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,145 DEBUG Processing 154/533 atomic regions from SNP 46053 to 46654 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,285 DEBUG Processing 525/600 atomic regions from SNP 157324 to 157924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,317 DEBUG Processing 597/664 atomic regions from SNP 179093 to 179693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,325 DEBUG Processing 489/563 atomic regions from SNP 146490 to 147090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,345 DEBUG Processing 155/533 atomic regions from SNP 46354 to 46955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,500 DEBUG Processing 526/600 atomic regions from SNP 157624 to 158224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,541 DEBUG Processing 490/563 atomic regions from SNP 146790 to 147390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,547 DEBUG Processing 598/664 atomic regions from SNP 179393 to 179993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,549 DEBUG Processing 156/533 atomic regions from SNP 46655 to 47256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,717 DEBUG Processing 527/600 atomic regions from SNP 157924 to 158524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,752 DEBUG Processing 157/533 atomic regions from SNP 46956 to 47557 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,757 DEBUG Processing 491/563 atomic regions from SNP 147090 to 147690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,772 DEBUG Processing 599/664 atomic regions from SNP 179693 to 180293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,936 DEBUG Processing 528/600 atomic regions from SNP 158224 to 158824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,961 DEBUG Processing 158/533 atomic regions from SNP 47257 to 47858 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,978 DEBUG Processing 492/563 atomic regions from SNP 147390 to 147990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,028 DEBUG Processing 600/664 atomic regions from SNP 179993 to 180593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,153 DEBUG Processing 529/600 atomic regions from SNP 158524 to 159124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,165 DEBUG Processing 159/533 atomic regions from SNP 47558 to 48159 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,194 DEBUG Processing 493/563 atomic regions from SNP 147690 to 148290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,260 DEBUG Processing 601/664 atomic regions from SNP 180293 to 180893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,371 DEBUG Processing 530/600 atomic regions from SNP 158824 to 159424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,384 DEBUG Processing 160/533 atomic regions from SNP 47859 to 48460 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,412 DEBUG Processing 494/563 atomic regions from SNP 147990 to 148590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,492 DEBUG Processing 602/664 atomic regions from SNP 180593 to 181193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,590 DEBUG Processing 531/600 atomic regions from SNP 159124 to 159724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,608 DEBUG Processing 161/533 atomic regions from SNP 48160 to 48761 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,633 DEBUG Processing 495/563 atomic regions from SNP 148290 to 148890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,721 DEBUG Processing 603/664 atomic regions from SNP 180893 to 181493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,806 DEBUG Processing 532/600 atomic regions from SNP 159424 to 160024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,819 DEBUG Processing 162/533 atomic regions from SNP 48461 to 49062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,853 DEBUG Processing 496/563 atomic regions from SNP 148590 to 149190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,952 DEBUG Processing 604/664 atomic regions from SNP 181193 to 181793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,027 DEBUG Processing 533/600 atomic regions from SNP 159724 to 160324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,030 DEBUG Processing 163/533 atomic regions from SNP 48762 to 49363 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,071 DEBUG Processing 497/563 atomic regions from SNP 148890 to 149490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,181 DEBUG Processing 605/664 atomic regions from SNP 181493 to 182093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,243 DEBUG Processing 164/533 atomic regions from SNP 49063 to 49664 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,248 DEBUG Processing 534/600 atomic regions from SNP 160024 to 160624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,305 DEBUG Processing 498/563 atomic regions from SNP 149190 to 149790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,415 DEBUG Processing 606/664 atomic regions from SNP 181793 to 182393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,467 DEBUG Processing 165/533 atomic regions from SNP 49364 to 49965 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,469 DEBUG Processing 535/600 atomic regions from SNP 160324 to 160924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,552 DEBUG Processing 499/563 atomic regions from SNP 149490 to 150090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,660 DEBUG Processing 607/664 atomic regions from SNP 182093 to 182693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,698 DEBUG Processing 166/533 atomic regions from SNP 49665 to 50266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,715 DEBUG Processing 536/600 atomic regions from SNP 160624 to 161224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,801 DEBUG Processing 500/563 atomic regions from SNP 149790 to 150390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,889 DEBUG Processing 608/664 atomic regions from SNP 182393 to 182993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,903 DEBUG Processing 167/533 atomic regions from SNP 49966 to 50567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,955 DEBUG Processing 537/600 atomic regions from SNP 160924 to 161524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,039 DEBUG Processing 501/563 atomic regions from SNP 150090 to 150690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,108 DEBUG Processing 168/533 atomic regions from SNP 50267 to 50868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,126 DEBUG Processing 609/664 atomic regions from SNP 182693 to 183293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,179 DEBUG Processing 538/600 atomic regions from SNP 161224 to 161824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,261 DEBUG Processing 502/563 atomic regions from SNP 150390 to 150990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,316 DEBUG Processing 169/533 atomic regions from SNP 50568 to 51168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,389 DEBUG Processing 610/664 atomic regions from SNP 182993 to 183593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,395 DEBUG Processing 539/600 atomic regions from SNP 161524 to 162124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,481 DEBUG Processing 503/563 atomic regions from SNP 150690 to 151290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,522 DEBUG Processing 170/533 atomic regions from SNP 50868 to 51468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,611 DEBUG Processing 540/600 atomic regions from SNP 161824 to 162424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,655 DEBUG Processing 611/664 atomic regions from SNP 183293 to 183893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,697 DEBUG Processing 504/563 atomic regions from SNP 150990 to 151590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,727 DEBUG Processing 171/533 atomic regions from SNP 51168 to 51768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,827 DEBUG Processing 541/600 atomic regions from SNP 162124 to 162724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,915 DEBUG Processing 505/563 atomic regions from SNP 151290 to 151890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,917 DEBUG Processing 612/664 atomic regions from SNP 183593 to 184193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,932 DEBUG Processing 172/533 atomic regions from SNP 51468 to 52068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,043 DEBUG Processing 542/600 atomic regions from SNP 162424 to 163024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,130 DEBUG Processing 506/563 atomic regions from SNP 151590 to 152190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,162 DEBUG Processing 173/533 atomic regions from SNP 51768 to 52368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,183 DEBUG Processing 613/664 atomic regions from SNP 183893 to 184493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,258 DEBUG Processing 543/600 atomic regions from SNP 162724 to 163324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,351 DEBUG Processing 507/563 atomic regions from SNP 151890 to 152490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,409 DEBUG Processing 174/533 atomic regions from SNP 52068 to 52668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,440 DEBUG Processing 614/664 atomic regions from SNP 184193 to 184793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,484 DEBUG Processing 544/600 atomic regions from SNP 163024 to 163624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,573 DEBUG Processing 508/563 atomic regions from SNP 152190 to 152790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,655 DEBUG Processing 175/533 atomic regions from SNP 52368 to 52968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,682 DEBUG Processing 615/664 atomic regions from SNP 184493 to 185093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,710 DEBUG Processing 545/600 atomic regions from SNP 163324 to 163924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,789 DEBUG Processing 509/563 atomic regions from SNP 152490 to 153090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,882 DEBUG Processing 176/533 atomic regions from SNP 52668 to 53268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,934 DEBUG Processing 546/600 atomic regions from SNP 163624 to 164224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,947 DEBUG Processing 616/664 atomic regions from SNP 184793 to 185393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,009 DEBUG Processing 510/563 atomic regions from SNP 152790 to 153390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,086 DEBUG Processing 177/533 atomic regions from SNP 52968 to 53568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,154 DEBUG Processing 547/600 atomic regions from SNP 163924 to 164524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,210 DEBUG Processing 617/664 atomic regions from SNP 185093 to 185693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,234 DEBUG Processing 511/563 atomic regions from SNP 153090 to 153690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,320 DEBUG Processing 178/533 atomic regions from SNP 53268 to 53868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,366 DEBUG Processing 548/600 atomic regions from SNP 164224 to 164824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,458 DEBUG Processing 512/563 atomic regions from SNP 153390 to 153990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,470 DEBUG Processing 618/664 atomic regions from SNP 185393 to 185993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,553 DEBUG Processing 179/533 atomic regions from SNP 53568 to 54168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,574 DEBUG Processing 549/600 atomic regions from SNP 164524 to 165124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,680 DEBUG Processing 513/563 atomic regions from SNP 153690 to 154290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,728 DEBUG Processing 619/664 atomic regions from SNP 185693 to 186293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,790 DEBUG Processing 550/600 atomic regions from SNP 164824 to 165424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,793 DEBUG Processing 180/533 atomic regions from SNP 53868 to 54468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,907 DEBUG Processing 514/563 atomic regions from SNP 153990 to 154590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,966 DEBUG Processing 620/664 atomic regions from SNP 185993 to 186593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,002 DEBUG Processing 551/600 atomic regions from SNP 165124 to 165724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,033 DEBUG Processing 181/533 atomic regions from SNP 54168 to 54768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,158 DEBUG Processing 515/563 atomic regions from SNP 154290 to 154890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,203 DEBUG Processing 621/664 atomic regions from SNP 186293 to 186893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,216 DEBUG Processing 552/600 atomic regions from SNP 165424 to 166024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,274 DEBUG Processing 182/533 atomic regions from SNP 54468 to 55068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,400 DEBUG Processing 516/563 atomic regions from SNP 154590 to 155190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,434 DEBUG Processing 553/600 atomic regions from SNP 165724 to 166324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,439 DEBUG Processing 622/664 atomic regions from SNP 186593 to 187193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,509 DEBUG Processing 183/533 atomic regions from SNP 54768 to 55368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,622 DEBUG Processing 517/563 atomic regions from SNP 154890 to 155490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,660 DEBUG Processing 554/600 atomic regions from SNP 166024 to 166624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,703 DEBUG Processing 623/664 atomic regions from SNP 186893 to 187493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,746 DEBUG Processing 184/533 atomic regions from SNP 55068 to 55668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,858 DEBUG Processing 518/563 atomic regions from SNP 155190 to 155790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,903 DEBUG Processing 555/600 atomic regions from SNP 166324 to 166924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,959 DEBUG Processing 624/664 atomic regions from SNP 187193 to 187793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,983 DEBUG Processing 185/533 atomic regions from SNP 55368 to 55968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,113 DEBUG Processing 519/563 atomic regions from SNP 155490 to 156090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,114 DEBUG Processing 556/600 atomic regions from SNP 166624 to 167224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,219 DEBUG Processing 625/664 atomic regions from SNP 187493 to 188093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,224 DEBUG Processing 186/533 atomic regions from SNP 55668 to 56268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,349 DEBUG Processing 557/600 atomic regions from SNP 166924 to 167524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,363 DEBUG Processing 520/563 atomic regions from SNP 155790 to 156390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,455 DEBUG Processing 187/533 atomic regions from SNP 55968 to 56568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,491 DEBUG Processing 626/664 atomic regions from SNP 187793 to 188393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,592 DEBUG Processing 558/600 atomic regions from SNP 167224 to 167824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,610 DEBUG Processing 521/563 atomic regions from SNP 156090 to 156690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,663 DEBUG Processing 188/533 atomic regions from SNP 56268 to 56868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,755 DEBUG Processing 627/664 atomic regions from SNP 188093 to 188693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,811 DEBUG Processing 559/600 atomic regions from SNP 167524 to 168124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,850 DEBUG Processing 522/563 atomic regions from SNP 156390 to 156990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,870 DEBUG Processing 189/533 atomic regions from SNP 56568 to 57168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,008 DEBUG Processing 628/664 atomic regions from SNP 188393 to 188993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,032 DEBUG Processing 560/600 atomic regions from SNP 167824 to 168424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,074 DEBUG Processing 190/533 atomic regions from SNP 56868 to 57468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,127 DEBUG Processing 523/563 atomic regions from SNP 156690 to 157290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,237 DEBUG Processing 629/664 atomic regions from SNP 188693 to 189293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,256 DEBUG Processing 561/600 atomic regions from SNP 168124 to 168724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,279 DEBUG Processing 191/533 atomic regions from SNP 57168 to 57768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,385 DEBUG Processing 524/563 atomic regions from SNP 156990 to 157590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,468 DEBUG Processing 630/664 atomic regions from SNP 188993 to 189593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,480 DEBUG Processing 562/600 atomic regions from SNP 168424 to 169024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,484 DEBUG Processing 192/533 atomic regions from SNP 57468 to 58068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,648 DEBUG Processing 525/563 atomic regions from SNP 157290 to 157890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,692 DEBUG Processing 193/533 atomic regions from SNP 57768 to 58368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,701 DEBUG Processing 563/600 atomic regions from SNP 168724 to 169324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,701 DEBUG Processing 631/664 atomic regions from SNP 189293 to 189893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,909 DEBUG Processing 194/533 atomic regions from SNP 58068 to 58668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,918 DEBUG Processing 526/563 atomic regions from SNP 157590 to 158190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,934 DEBUG Processing 564/600 atomic regions from SNP 169024 to 169624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,943 DEBUG Processing 632/664 atomic regions from SNP 189593 to 190193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,124 DEBUG Processing 195/533 atomic regions from SNP 58368 to 58968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,162 DEBUG Processing 565/600 atomic regions from SNP 169324 to 169924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,168 DEBUG Processing 527/563 atomic regions from SNP 157890 to 158490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,179 DEBUG Processing 633/664 atomic regions from SNP 189893 to 190493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,327 DEBUG Processing 196/533 atomic regions from SNP 58668 to 59268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,412 DEBUG Processing 566/600 atomic regions from SNP 169624 to 170224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,414 DEBUG Processing 528/563 atomic regions from SNP 158190 to 158790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,414 DEBUG Processing 634/664 atomic regions from SNP 190193 to 190793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,528 DEBUG Processing 197/533 atomic regions from SNP 58968 to 59568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,637 DEBUG Processing 567/600 atomic regions from SNP 169924 to 170524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,644 DEBUG Processing 635/664 atomic regions from SNP 190493 to 191093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,670 DEBUG Processing 529/563 atomic regions from SNP 158490 to 159090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,726 DEBUG Processing 198/533 atomic regions from SNP 59268 to 59868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,871 DEBUG Processing 568/600 atomic regions from SNP 170224 to 170824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,885 DEBUG Processing 636/664 atomic regions from SNP 190793 to 191393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,923 DEBUG Processing 530/563 atomic regions from SNP 158790 to 159390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,928 DEBUG Processing 199/533 atomic regions from SNP 59568 to 60168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,112 DEBUG Processing 637/664 atomic regions from SNP 191093 to 191693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,124 DEBUG Processing 569/600 atomic regions from SNP 170524 to 171124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,136 DEBUG Processing 200/533 atomic regions from SNP 59868 to 60468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,175 DEBUG Processing 531/563 atomic regions from SNP 159090 to 159690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,338 DEBUG Processing 638/664 atomic regions from SNP 191393 to 191993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,340 DEBUG Processing 201/533 atomic regions from SNP 60168 to 60768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,378 DEBUG Processing 570/600 atomic regions from SNP 170824 to 171424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,425 DEBUG Processing 532/563 atomic regions from SNP 159390 to 159990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,538 DEBUG Processing 202/533 atomic regions from SNP 60468 to 61068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,559 DEBUG Processing 639/664 atomic regions from SNP 191693 to 192293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,626 DEBUG Processing 571/600 atomic regions from SNP 171124 to 171724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,651 DEBUG Processing 533/563 atomic regions from SNP 159690 to 160290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,742 DEBUG Processing 203/533 atomic regions from SNP 60768 to 61368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,771 DEBUG Processing 640/664 atomic regions from SNP 191993 to 192593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,878 DEBUG Processing 572/600 atomic regions from SNP 171424 to 172024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,884 DEBUG Processing 534/563 atomic regions from SNP 159990 to 160590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,946 DEBUG Processing 204/533 atomic regions from SNP 61068 to 61668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,981 DEBUG Processing 641/664 atomic regions from SNP 192293 to 192893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,103 DEBUG Processing 535/563 atomic regions from SNP 160290 to 160890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,129 DEBUG Processing 573/600 atomic regions from SNP 171724 to 172324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,155 DEBUG Processing 205/533 atomic regions from SNP 61368 to 61968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,195 DEBUG Processing 642/664 atomic regions from SNP 192593 to 193193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,331 DEBUG Processing 536/563 atomic regions from SNP 160590 to 161190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,367 DEBUG Processing 206/533 atomic regions from SNP 61668 to 62268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,382 DEBUG Processing 574/600 atomic regions from SNP 172024 to 172624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,418 DEBUG Processing 643/664 atomic regions from SNP 192893 to 193493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,576 DEBUG Processing 207/533 atomic regions from SNP 61968 to 62568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,578 DEBUG Processing 537/563 atomic regions from SNP 160890 to 161490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,635 DEBUG Processing 575/600 atomic regions from SNP 172324 to 172924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,653 DEBUG Processing 644/664 atomic regions from SNP 193193 to 193793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,783 DEBUG Processing 208/533 atomic regions from SNP 62268 to 62868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,834 DEBUG Processing 538/563 atomic regions from SNP 161190 to 161790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,878 DEBUG Processing 645/664 atomic regions from SNP 193493 to 194093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,882 DEBUG Processing 576/600 atomic regions from SNP 172624 to 173224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,984 DEBUG Processing 209/533 atomic regions from SNP 62568 to 63168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,083 DEBUG Processing 539/563 atomic regions from SNP 161490 to 162090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,112 DEBUG Processing 646/664 atomic regions from SNP 193793 to 194393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,124 DEBUG Processing 577/600 atomic regions from SNP 172924 to 173524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,184 DEBUG Processing 210/533 atomic regions from SNP 62868 to 63468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,324 DEBUG Processing 540/563 atomic regions from SNP 161790 to 162390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,347 DEBUG Processing 647/664 atomic regions from SNP 194093 to 194693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,378 DEBUG Processing 578/600 atomic regions from SNP 173224 to 173824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,390 DEBUG Processing 211/533 atomic regions from SNP 63168 to 63768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,580 DEBUG Processing 541/563 atomic regions from SNP 162090 to 162690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,584 DEBUG Processing 648/664 atomic regions from SNP 194393 to 194993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,600 DEBUG Processing 212/533 atomic regions from SNP 63468 to 64068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,636 DEBUG Processing 579/600 atomic regions from SNP 173524 to 174124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,807 DEBUG Processing 213/533 atomic regions from SNP 63768 to 64368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,826 DEBUG Processing 542/563 atomic regions from SNP 162390 to 162990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,827 DEBUG Processing 649/664 atomic regions from SNP 194693 to 195293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,898 DEBUG Processing 580/600 atomic regions from SNP 173824 to 174424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,005 DEBUG Processing 214/533 atomic regions from SNP 64068 to 64668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,072 DEBUG Processing 650/664 atomic regions from SNP 194993 to 195593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,072 DEBUG Processing 543/563 atomic regions from SNP 162690 to 163290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,159 DEBUG Processing 581/600 atomic regions from SNP 174124 to 174724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,204 DEBUG Processing 215/533 atomic regions from SNP 64368 to 64968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,303 DEBUG Processing 544/563 atomic regions from SNP 162990 to 163590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,305 DEBUG Processing 651/664 atomic regions from SNP 195293 to 195893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,406 DEBUG Processing 216/533 atomic regions from SNP 64668 to 65268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,414 DEBUG Processing 582/600 atomic regions from SNP 174424 to 175024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,523 DEBUG Processing 545/563 atomic regions from SNP 163290 to 163890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,538 DEBUG Processing 652/664 atomic regions from SNP 195593 to 196193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,611 DEBUG Processing 217/533 atomic regions from SNP 64968 to 65568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,668 DEBUG Processing 583/600 atomic regions from SNP 174724 to 175324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,732 DEBUG Processing 546/563 atomic regions from SNP 163590 to 164190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,767 DEBUG Processing 653/664 atomic regions from SNP 195893 to 196493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,816 DEBUG Processing 218/533 atomic regions from SNP 65268 to 65868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,887 DEBUG Processing 584/600 atomic regions from SNP 175024 to 175624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,940 DEBUG Processing 547/563 atomic regions from SNP 163890 to 164490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,003 DEBUG Processing 654/664 atomic regions from SNP 196193 to 196793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,017 DEBUG Processing 219/533 atomic regions from SNP 65568 to 66168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,120 DEBUG Processing 585/600 atomic regions from SNP 175324 to 175924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,151 DEBUG Processing 548/563 atomic regions from SNP 164190 to 164790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,217 DEBUG Processing 220/533 atomic regions from SNP 65868 to 66468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,233 DEBUG Processing 655/664 atomic regions from SNP 196493 to 197093 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,363 DEBUG Processing 549/563 atomic regions from SNP 164490 to 165090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,371 DEBUG Processing 586/600 atomic regions from SNP 175624 to 176224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,417 DEBUG Processing 221/533 atomic regions from SNP 66168 to 66768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,495 DEBUG Processing 656/664 atomic regions from SNP 196793 to 197393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,576 DEBUG Processing 550/563 atomic regions from SNP 164790 to 165390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,607 DEBUG Processing 587/600 atomic regions from SNP 175924 to 176524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,615 DEBUG Processing 222/533 atomic regions from SNP 66468 to 67068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,735 DEBUG Processing 657/664 atomic regions from SNP 197093 to 197693 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,788 DEBUG Processing 551/563 atomic regions from SNP 165090 to 165690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,815 DEBUG Processing 223/533 atomic regions from SNP 66768 to 67368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,831 DEBUG Processing 588/600 atomic regions from SNP 176224 to 176824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,970 DEBUG Processing 658/664 atomic regions from SNP 197393 to 197993 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,019 DEBUG Processing 224/533 atomic regions from SNP 67068 to 67668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,035 DEBUG Processing 552/563 atomic regions from SNP 165390 to 165990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,056 DEBUG Processing 589/600 atomic regions from SNP 176524 to 177124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,198 DEBUG Processing 659/664 atomic regions from SNP 197693 to 198293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,210 DEBUG Processing 225/533 atomic regions from SNP 67368 to 67968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,270 DEBUG Processing 553/563 atomic regions from SNP 165690 to 166290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,287 DEBUG Processing 590/600 atomic regions from SNP 176824 to 177424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,401 DEBUG Processing 226/533 atomic regions from SNP 67668 to 68268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,426 DEBUG Processing 660/664 atomic regions from SNP 197993 to 198593 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,498 DEBUG Processing 554/563 atomic regions from SNP 165990 to 166590 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,548 DEBUG Processing 591/600 atomic regions from SNP 177124 to 177724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,591 DEBUG Processing 227/533 atomic regions from SNP 67968 to 68568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,653 DEBUG Processing 661/664 atomic regions from SNP 198293 to 198893 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,703 DEBUG Processing 555/563 atomic regions from SNP 166290 to 166890 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,792 DEBUG Processing 228/533 atomic regions from SNP 68268 to 68868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,805 DEBUG Processing 592/600 atomic regions from SNP 177424 to 178024 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,875 DEBUG Processing 662/664 atomic regions from SNP 198593 to 199193 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,921 DEBUG Processing 556/563 atomic regions from SNP 166590 to 167190 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,987 DEBUG Processing 229/533 atomic regions from SNP 68568 to 69168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,069 DEBUG Processing 593/600 atomic regions from SNP 177724 to 178324 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,108 DEBUG Processing 663/664 atomic regions from SNP 198893 to 199493 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,150 DEBUG Processing 557/563 atomic regions from SNP 166890 to 167490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,183 DEBUG Processing 230/533 atomic regions from SNP 68868 to 69468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,325 DEBUG Processing 594/600 atomic regions from SNP 178024 to 178624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,332 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:57:58,342 DEBUG Processing 664/664 atomic regions from SNP 199193 to 199793 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,381 DEBUG Processing 231/533 atomic regions from SNP 69168 to 69768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,387 DEBUG Processing 558/563 atomic regions from SNP 167190 to 167790 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,500 DEBUG Unique SNPs positions in subchromosome 1: 199794 2025-01-31 09:57:58,578 DEBUG Processing 595/600 atomic regions from SNP 178324 to 178924 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,587 DEBUG Processing 232/533 atomic regions from SNP 69468 to 70068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,621 DEBUG Processing 559/563 atomic regions from SNP 167490 to 168090 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,794 DEBUG Processing 233/533 atomic regions from SNP 69768 to 70368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,804 DEBUG Processing 596/600 atomic regions from SNP 178624 to 179224 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,858 DEBUG Processing 560/563 atomic regions from SNP 167790 to 168390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,002 DEBUG Processing 234/533 atomic regions from SNP 70068 to 70668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,050 DEBUG Processing 597/600 atomic regions from SNP 178924 to 179524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,077 DEBUG Processing 561/563 atomic regions from SNP 168090 to 168690 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,206 DEBUG Processing 235/533 atomic regions from SNP 70368 to 70968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,297 DEBUG Processing 598/600 atomic regions from SNP 179224 to 179824 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,301 DEBUG Processing 562/563 atomic regions from SNP 168390 to 168990 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,411 DEBUG Processing 236/533 atomic regions from SNP 70668 to 71268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,533 DEBUG Processing 563/563 atomic regions from SNP 168690 to 169290 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,545 DEBUG Processing 599/600 atomic regions from SNP 179524 to 180124 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,616 DEBUG Processing 237/533 atomic regions from SNP 70968 to 71568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,708 DEBUG Unique SNPs positions in subchromosome 1: 169291 2025-01-31 09:57:59,755 DEBUG Processing 600/600 atomic regions from SNP 179824 to 180424 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,820 DEBUG Processing 238/533 atomic regions from SNP 71268 to 71868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,894 DEBUG Unique SNPs positions in subchromosome 1: 180425 2025-01-31 09:58:00,034 DEBUG Processing 239/533 atomic regions from SNP 71568 to 72168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,266 DEBUG Processing 240/533 atomic regions from SNP 71868 to 72468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,502 DEBUG Processing 241/533 atomic regions from SNP 72168 to 72768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,711 DEBUG Processing 242/533 atomic regions from SNP 72468 to 73068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,939 DEBUG Processing 243/533 atomic regions from SNP 72768 to 73368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,187 DEBUG Processing 244/533 atomic regions from SNP 73068 to 73668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,405 DEBUG Processing 245/533 atomic regions from SNP 73368 to 73968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,625 DEBUG Processing 246/533 atomic regions from SNP 73668 to 74268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,859 DEBUG Processing 247/533 atomic regions from SNP 73968 to 74568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,098 DEBUG Processing 248/533 atomic regions from SNP 74268 to 74868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,318 DEBUG Processing 249/533 atomic regions from SNP 74568 to 75168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,507 DEBUG Subchromosome time: 181.0415261349408, subchromosome SNPs: 199794 2025-01-31 09:58:02,508 DEBUG Estimated BADs: [2.85, 1.42, 5.69, 1.42, 2.85, 0.71, 1.42, 0.36, 0.71, 2.85, 1.42, 5.69, 1.42, 4.27, 1.42, 4.27, 1.42, 0.36, 1.42, 2.85, 14.24, 1.42, 5.69, 1.42, 14.24, 0.71] SNP counts: [4320, 26245, 539, 13046, 2355, 31735, 14850, 5087, 10224, 5109, 7949, 1091, 5796, 1947, 3667, 8076, 8942, 6917, 4344, 10335, 235, 10004, 5084, 8924, 90, 2883] SNP IDs counts: [4320, 26245, 539, 13046, 2355, 31735, 14850, 5087, 10224, 5109, 7949, 1091, 5796, 1947, 3667, 8076, 8942, 6917, 4344, 10335, 235, 10004, 5084, 8924, 90, 2883] Critical gap: 601307bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.42Mbp, 24.56Mbp, 24.85Mbp, 31.93Mbp, 33.21Mbp, 51.67Mbp, 60.16Mbp, 63.21Mbp, 69.15Mbp, 71.88Mbp, 76.18Mbp, 76.78Mbp, 79.96Mbp, 80.98Mbp, 83.02Mbp, 87.27Mbp, 92.69Mbp, 96.77Mbp, 99.23Mbp, 104.93Mbp, 105.05Mbp, 110.37Mbp, 113.04Mbp, 118.30Mbp, 118.35Mbp, 120.13Mbp] 2025-01-31 09:58:02,508 DEBUG chr12 time: 181.04203442193102 s 2025-01-31 09:58:02,518 DEBUG Processing 250/533 atomic regions from SNP 74868 to 75468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,642 DEBUG chr12: Fitting background model for 26 segments 2025-01-31 09:58:02,719 DEBUG Processing 251/533 atomic regions from SNP 75168 to 75768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,948 DEBUG Processing 252/533 atomic regions from SNP 75468 to 76068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,182 DEBUG Processing 253/533 atomic regions from SNP 75768 to 76368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,408 DEBUG Processing 254/533 atomic regions from SNP 76068 to 76668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,627 DEBUG Processing 255/533 atomic regions from SNP 76368 to 76968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,837 DEBUG Processing 256/533 atomic regions from SNP 76668 to 77268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,020 DEBUG Processing 257/533 atomic regions from SNP 76968 to 77568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,228 DEBUG Processing 258/533 atomic regions from SNP 77268 to 77868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,412 DEBUG Processing 259/533 atomic regions from SNP 77568 to 78168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,598 DEBUG Processing 260/533 atomic regions from SNP 77868 to 78468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,790 DEBUG Processing 261/533 atomic regions from SNP 78168 to 78768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,988 DEBUG Processing 262/533 atomic regions from SNP 78468 to 79068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,185 DEBUG Processing 263/533 atomic regions from SNP 78768 to 79368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,385 DEBUG Processing 264/533 atomic regions from SNP 79068 to 79668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,586 DEBUG Processing 265/533 atomic regions from SNP 79368 to 79968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,780 DEBUG Processing 266/533 atomic regions from SNP 79668 to 80268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,839 DEBUG Subchromosome time: 151.61569155100733, subchromosome SNPs: 169291 2025-01-31 09:58:05,839 DEBUG Estimated BADs: [1.49, 5.98, 0.75, 2.99, 1.49, 5.98, 0.37, 2.99, 0.75, 2.99, 0.75, 0.37, 1.49, 0.37, 0.75, 1.49, 5.98, 2.99] SNP counts: [725, 2673, 5122, 11853, 4476, 3551, 857, 7226, 10202, 17991, 23715, 5853, 7024, 6909, 41670, 4373, 8272, 6799] SNP IDs counts: [725, 2673, 5122, 11853, 4476, 3551, 857, 7226, 10202, 17991, 23715, 5853, 7024, 6909, 41670, 4373, 8272, 6799] Critical gap: 530245bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.09Mbp], 3.84Mbp, 5.26Mbp, 8.02Mbp, 14.48Mbp, 17.12Mbp, 19.02Mbp, 19.59Mbp, 23.58Mbp, 29.23Mbp, 38.90Mbp, 52.36Mbp, 55.82Mbp, 59.90Mbp, 63.99Mbp, 87.69Mbp, 90.12Mbp, 94.47Mbp, 98.21Mbp] 2025-01-31 09:58:05,839 DEBUG chr16 time: 151.6162148640724 s 2025-01-31 09:58:05,955 DEBUG chr16: Fitting background model for 18 segments 2025-01-31 09:58:05,984 DEBUG Processing 267/533 atomic regions from SNP 79968 to 80568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,192 DEBUG Processing 268/533 atomic regions from SNP 80268 to 80868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,397 DEBUG Processing 269/533 atomic regions from SNP 80568 to 81168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,613 DEBUG Processing 270/533 atomic regions from SNP 80868 to 81468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,737 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:58:06,739 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:58:06,819 DEBUG Processing 271/533 atomic regions from SNP 81168 to 81768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,029 DEBUG Processing 272/533 atomic regions from SNP 81468 to 82068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,241 DEBUG Processing 273/533 atomic regions from SNP 81768 to 82368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,452 DEBUG Processing 274/533 atomic regions from SNP 82068 to 82668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,659 DEBUG Processing 275/533 atomic regions from SNP 82368 to 82968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,865 DEBUG Processing 276/533 atomic regions from SNP 82668 to 83268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,083 DEBUG Processing 277/533 atomic regions from SNP 82968 to 83568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,288 DEBUG Processing 278/533 atomic regions from SNP 83268 to 83868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,497 DEBUG Processing 279/533 atomic regions from SNP 83568 to 84168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,661 DEBUG chrY total SNP count: 124 2025-01-31 09:58:08,662 DEBUG chrY length: 91744698 2025-01-31 09:58:08,662 DEBUG ----------------------------------------- 2025-01-31 09:58:08,662 INFO Processing SNPs in chrY 2025-01-31 09:58:08,663 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 5), (5, 16), (16, 23), (23, 37), (37, 45), (45, 54), (54, 67), (67, 69), (69, 72), (72, 79), (79, 81), (81, 82), (82, 124)] 2025-01-31 09:58:08,663 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [5, 11, 7, 14, 8, 9, 13, 2, 3, 7, 2, 1, 42] SNP IDs counts: [5, 11, 7, 14, 8, 9, 13, 2, 3, 7, 2, 1, 42] Critical gap: 14944bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[0.96Mbp], 0.97Mbp[0.29Mbp], 1.26Mbp[0.62Mbp], 1.89Mbp[0.06Mbp], 1.96Mbp[0.40Mbp], 2.37Mbp[1.59Mbp], 3.96Mbp[0.05Mbp], 4.02Mbp[2.26Mbp], 6.28Mbp[0.49Mbp], 6.78Mbp[3.92Mbp], 10.71Mbp[12.01Mbp], 22.72Mbp[64.03Mbp], 86.75Mbp[3.97Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 09:58:08,663 DEBUG chrY time: 0.0016064399387687445 s 2025-01-31 09:58:08,699 DEBUG Processing 280/533 atomic regions from SNP 83868 to 84468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,899 DEBUG Processing 281/533 atomic regions from SNP 84168 to 84768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,103 DEBUG Processing 282/533 atomic regions from SNP 84468 to 85068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,305 DEBUG Processing 283/533 atomic regions from SNP 84768 to 85368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,506 DEBUG Subchromosome time: 165.31984154204838, subchromosome SNPs: 180425 2025-01-31 09:58:09,506 DEBUG Estimated BADs: [0.89, 8.88, 1.78, 17.75, 1.78, 0.59, 0.89, 1.78, 3.55, 1.78, 0.44, 0.89, 3.55, 1.78, 8.88, 0.89, 10.65, 1.78, 7.10, 3.55, 1.78, 5.33, 1.78, 8.88, 3.55, 7.10, 1.78] SNP counts: [3365, 140, 6853, 81, 8017, 23979, 6751, 8626, 4276, 11765, 7369, 14409, 2694, 14233, 122, 10495, 246, 4603, 12504, 6402, 5416, 1178, 16843, 2331, 4216, 2679, 832] SNP IDs counts: [3365, 140, 6853, 81, 8017, 23979, 6751, 8626, 4276, 11765, 7369, 14409, 2694, 14233, 122, 10495, 246, 4603, 12504, 6402, 5416, 1178, 16843, 2331, 4216, 2679, 832] Critical gap: 545446bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.09Mbp, 5.16Mbp, 9.02Mbp, 9.10Mbp, 13.53Mbp, 27.42Mbp, 31.23Mbp, 36.15Mbp, 38.44Mbp, 45.17Mbp, 49.47Mbp, 57.63Mbp, 59.05Mbp, 67.11Mbp, 67.18Mbp, 73.05Mbp, 73.19Mbp, 75.71Mbp, 82.38Mbp, 85.83Mbp, 88.69Mbp, 89.32Mbp, 98.50Mbp, 99.73Mbp, 101.97Mbp, 103.37Mbp, 104.04Mbp] 2025-01-31 09:58:09,506 DEBUG chr15 time: 165.3203855130123 s 2025-01-31 09:58:09,518 DEBUG Processing 284/533 atomic regions from SNP 85068 to 85668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,623 DEBUG chr15: Fitting background model for 27 segments 2025-01-31 09:58:09,730 DEBUG Processing 285/533 atomic regions from SNP 85368 to 85968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,943 DEBUG Processing 286/533 atomic regions from SNP 85668 to 86268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,154 DEBUG Processing 287/533 atomic regions from SNP 85968 to 86568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,356 DEBUG Processing 288/533 atomic regions from SNP 86268 to 86868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,570 DEBUG Processing 289/533 atomic regions from SNP 86568 to 87168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,775 DEBUG Processing 290/533 atomic regions from SNP 86868 to 87468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,978 DEBUG Processing 291/533 atomic regions from SNP 87168 to 87768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,187 DEBUG Processing 292/533 atomic regions from SNP 87468 to 88068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,387 DEBUG Processing 293/533 atomic regions from SNP 87768 to 88368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,437 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:58:11,588 DEBUG Processing 294/533 atomic regions from SNP 88068 to 88668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,791 DEBUG Processing 295/533 atomic regions from SNP 88368 to 88968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,995 DEBUG Processing 296/533 atomic regions from SNP 88668 to 89268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,203 DEBUG Processing 297/533 atomic regions from SNP 88968 to 89568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,412 DEBUG Processing 298/533 atomic regions from SNP 89268 to 89868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,624 DEBUG Processing 299/533 atomic regions from SNP 89568 to 90168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,836 DEBUG Processing 300/533 atomic regions from SNP 89868 to 90468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,053 DEBUG Processing 301/533 atomic regions from SNP 90168 to 90768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,273 DEBUG Processing 302/533 atomic regions from SNP 90468 to 91068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,515 DEBUG Processing 303/533 atomic regions from SNP 90768 to 91368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,760 DEBUG Processing 304/533 atomic regions from SNP 91068 to 91668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,993 DEBUG Processing 305/533 atomic regions from SNP 91368 to 91968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,225 DEBUG Processing 306/533 atomic regions from SNP 91668 to 92268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,468 DEBUG Processing 307/533 atomic regions from SNP 91968 to 92568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,710 DEBUG Processing 308/533 atomic regions from SNP 92268 to 92868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,952 DEBUG Processing 309/533 atomic regions from SNP 92568 to 93168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,177 DEBUG Processing 310/533 atomic regions from SNP 92868 to 93468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,388 DEBUG Processing 311/533 atomic regions from SNP 93168 to 93768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,606 DEBUG Processing 312/533 atomic regions from SNP 93468 to 94068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,823 DEBUG Processing 313/533 atomic regions from SNP 93768 to 94368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,038 DEBUG Processing 314/533 atomic regions from SNP 94068 to 94668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,252 DEBUG Processing 315/533 atomic regions from SNP 94368 to 94968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,459 DEBUG Processing 316/533 atomic regions from SNP 94668 to 95268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,662 DEBUG Processing 317/533 atomic regions from SNP 94968 to 95568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,857 DEBUG Processing 318/533 atomic regions from SNP 95268 to 95868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,048 DEBUG Processing 319/533 atomic regions from SNP 95568 to 96168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,240 DEBUG Processing 320/533 atomic regions from SNP 95868 to 96468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,437 DEBUG Processing 321/533 atomic regions from SNP 96168 to 96768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,640 DEBUG Processing 322/533 atomic regions from SNP 96468 to 97068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,840 DEBUG Processing 323/533 atomic regions from SNP 96768 to 97368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,044 DEBUG Processing 324/533 atomic regions from SNP 97068 to 97668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,244 DEBUG Processing 325/533 atomic regions from SNP 97368 to 97968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,452 DEBUG Processing 326/533 atomic regions from SNP 97668 to 98268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,654 DEBUG Processing 327/533 atomic regions from SNP 97968 to 98568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,852 DEBUG Processing 328/533 atomic regions from SNP 98268 to 98868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,052 DEBUG Processing 329/533 atomic regions from SNP 98568 to 99168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,247 DEBUG Processing 330/533 atomic regions from SNP 98868 to 99468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,447 DEBUG Processing 331/533 atomic regions from SNP 99168 to 99768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,651 DEBUG Processing 332/533 atomic regions from SNP 99468 to 100068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,855 DEBUG Processing 333/533 atomic regions from SNP 99768 to 100368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,054 DEBUG Processing 334/533 atomic regions from SNP 100068 to 100668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,258 DEBUG Processing 335/533 atomic regions from SNP 100368 to 100968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,454 DEBUG Processing 336/533 atomic regions from SNP 100668 to 101268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,653 DEBUG Processing 337/533 atomic regions from SNP 100968 to 101568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,858 DEBUG Processing 338/533 atomic regions from SNP 101268 to 101868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,058 DEBUG Processing 339/533 atomic regions from SNP 101568 to 102168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,259 DEBUG Processing 340/533 atomic regions from SNP 101868 to 102468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,429 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:58:21,431 DEBUG chr18: Signal quantile: 0.994. signal threshold: 13. Best RMSEA: 0.019 2025-01-31 09:58:21,463 DEBUG Processing 341/533 atomic regions from SNP 102168 to 102768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,660 DEBUG Processing 342/533 atomic regions from SNP 102468 to 103068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,854 DEBUG Processing 343/533 atomic regions from SNP 102768 to 103368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,051 DEBUG Processing 344/533 atomic regions from SNP 103068 to 103668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,253 DEBUG Processing 345/533 atomic regions from SNP 103368 to 103968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,469 DEBUG Processing 346/533 atomic regions from SNP 103668 to 104268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,687 DEBUG Processing 347/533 atomic regions from SNP 103968 to 104568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,889 DEBUG Processing 348/533 atomic regions from SNP 104268 to 104868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,092 DEBUG Processing 349/533 atomic regions from SNP 104568 to 105168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,121 DEBUG chr18 total SNP count: 156775 2025-01-31 09:58:23,121 DEBUG chr18 length: 90702639 2025-01-31 09:58:23,121 DEBUG ----------------------------------------- 2025-01-31 09:58:23,121 INFO Processing SNPs in chr18 2025-01-31 09:58:23,282 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 156775)] 2025-01-31 09:58:23,298 DEBUG Processing 350/533 atomic regions from SNP 104868 to 105468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,390 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:23,499 DEBUG Processing 351/533 atomic regions from SNP 105168 to 105768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,709 DEBUG Processing 352/533 atomic regions from SNP 105468 to 106068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,910 DEBUG Processing 353/533 atomic regions from SNP 105768 to 106368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,118 DEBUG Processing 354/533 atomic regions from SNP 106068 to 106668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,324 DEBUG Processing 355/533 atomic regions from SNP 106368 to 106968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,525 DEBUG Processing 356/533 atomic regions from SNP 106668 to 107268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,733 DEBUG Processing 357/533 atomic regions from SNP 106968 to 107568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,950 DEBUG Processing 358/533 atomic regions from SNP 107268 to 107868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,156 DEBUG Processing 359/533 atomic regions from SNP 107568 to 108168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,371 DEBUG Processing 360/533 atomic regions from SNP 107868 to 108468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,556 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:58:25,586 DEBUG Processing 361/533 atomic regions from SNP 108168 to 108768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,823 DEBUG Processing 362/533 atomic regions from SNP 108468 to 109068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,039 DEBUG Processing 363/533 atomic regions from SNP 108768 to 109368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,254 DEBUG Processing 364/533 atomic regions from SNP 109068 to 109668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,461 DEBUG Processing 365/533 atomic regions from SNP 109368 to 109968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,664 DEBUG Processing 366/533 atomic regions from SNP 109668 to 110268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,865 DEBUG Processing 367/533 atomic regions from SNP 109968 to 110568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,068 DEBUG Processing 368/533 atomic regions from SNP 110268 to 110868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,268 DEBUG Processing 369/533 atomic regions from SNP 110568 to 111168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,469 DEBUG Processing 370/533 atomic regions from SNP 110868 to 111468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,667 DEBUG Processing 371/533 atomic regions from SNP 111168 to 111768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,864 DEBUG Processing 372/533 atomic regions from SNP 111468 to 112068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,065 DEBUG Processing 373/533 atomic regions from SNP 111768 to 112368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,262 DEBUG Processing 374/533 atomic regions from SNP 112068 to 112668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,455 DEBUG Processing 375/533 atomic regions from SNP 112368 to 112968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,652 DEBUG Processing 376/533 atomic regions from SNP 112668 to 113268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,851 DEBUG Processing 377/533 atomic regions from SNP 112968 to 113568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,049 DEBUG Processing 378/533 atomic regions from SNP 113268 to 113868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,248 DEBUG Processing 379/533 atomic regions from SNP 113568 to 114168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,450 DEBUG Processing 380/533 atomic regions from SNP 113868 to 114468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,645 DEBUG Processing 381/533 atomic regions from SNP 114168 to 114768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,842 DEBUG Processing 382/533 atomic regions from SNP 114468 to 115068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,045 DEBUG Processing 383/533 atomic regions from SNP 114768 to 115368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,242 DEBUG Processing 384/533 atomic regions from SNP 115068 to 115668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,435 DEBUG Processing 385/533 atomic regions from SNP 115368 to 115968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,627 DEBUG Processing 386/533 atomic regions from SNP 115668 to 116268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,824 DEBUG Processing 387/533 atomic regions from SNP 115968 to 116568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,018 DEBUG Processing 388/533 atomic regions from SNP 116268 to 116868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,209 DEBUG Processing 389/533 atomic regions from SNP 116568 to 117168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,407 DEBUG Processing 390/533 atomic regions from SNP 116868 to 117468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,624 DEBUG Processing 391/533 atomic regions from SNP 117168 to 117768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,849 DEBUG Processing 392/533 atomic regions from SNP 117468 to 118068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,082 DEBUG Processing 393/533 atomic regions from SNP 117768 to 118368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,291 DEBUG Processing 394/533 atomic regions from SNP 118068 to 118668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,492 DEBUG Processing 395/533 atomic regions from SNP 118368 to 118968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,696 DEBUG Processing 396/533 atomic regions from SNP 118668 to 119268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,890 DEBUG Processing 397/533 atomic regions from SNP 118968 to 119568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,083 DEBUG Processing 398/533 atomic regions from SNP 119268 to 119868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,279 DEBUG Processing 399/533 atomic regions from SNP 119568 to 120168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,494 DEBUG Processing 400/533 atomic regions from SNP 119868 to 120468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,687 DEBUG Processing 401/533 atomic regions from SNP 120168 to 120768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,881 DEBUG Processing 402/533 atomic regions from SNP 120468 to 121068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,914 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:58:33,915 DEBUG chr19: Signal quantile: 0.988. signal threshold: 14. Best RMSEA: 0.013 2025-01-31 09:58:34,094 DEBUG Processing 403/533 atomic regions from SNP 120768 to 121368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,296 DEBUG Processing 404/533 atomic regions from SNP 121068 to 121668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,494 DEBUG Processing 405/533 atomic regions from SNP 121368 to 121968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,686 DEBUG Processing 406/533 atomic regions from SNP 121668 to 122268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,875 DEBUG Processing 407/533 atomic regions from SNP 121968 to 122568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,051 DEBUG chr19 total SNP count: 104982 2025-01-31 09:58:35,051 DEBUG chr19 length: 61431566 2025-01-31 09:58:35,051 DEBUG ----------------------------------------- 2025-01-31 09:58:35,051 INFO Processing SNPs in chr19 2025-01-31 09:58:35,069 DEBUG Processing 408/533 atomic regions from SNP 122268 to 122868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,152 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 104982)] 2025-01-31 09:58:35,220 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:35,263 DEBUG Processing 409/533 atomic regions from SNP 122568 to 123168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,455 DEBUG Processing 410/533 atomic regions from SNP 122868 to 123468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,640 DEBUG Processing 411/533 atomic regions from SNP 123168 to 123768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,835 DEBUG Processing 412/533 atomic regions from SNP 123468 to 124068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,033 DEBUG Processing 413/533 atomic regions from SNP 123768 to 124368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,241 DEBUG Processing 414/533 atomic regions from SNP 124068 to 124668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,441 DEBUG Processing 415/533 atomic regions from SNP 124368 to 124968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,634 DEBUG Processing 416/533 atomic regions from SNP 124668 to 125268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,823 DEBUG Processing 417/533 atomic regions from SNP 124968 to 125568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,017 DEBUG Processing 418/533 atomic regions from SNP 125268 to 125868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,213 DEBUG Processing 419/533 atomic regions from SNP 125568 to 126168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,403 DEBUG Processing 420/533 atomic regions from SNP 125868 to 126468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,609 DEBUG Processing 421/533 atomic regions from SNP 126168 to 126768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,808 DEBUG Processing 422/533 atomic regions from SNP 126468 to 127068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,005 DEBUG Processing 423/533 atomic regions from SNP 126768 to 127368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,198 DEBUG Processing 424/533 atomic regions from SNP 127068 to 127668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,394 DEBUG Processing 425/533 atomic regions from SNP 127368 to 127968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,587 DEBUG Processing 426/533 atomic regions from SNP 127668 to 128268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,777 DEBUG Processing 427/533 atomic regions from SNP 127968 to 128568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,960 DEBUG Processing 428/533 atomic regions from SNP 128268 to 128868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,153 DEBUG Processing 429/533 atomic regions from SNP 128568 to 129168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,341 DEBUG Processing 430/533 atomic regions from SNP 128868 to 129468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,527 DEBUG Processing 431/533 atomic regions from SNP 129168 to 129768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,728 DEBUG Processing 432/533 atomic regions from SNP 129468 to 130068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,913 DEBUG Processing 433/533 atomic regions from SNP 129768 to 130368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,101 DEBUG Processing 434/533 atomic regions from SNP 130068 to 130668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,290 DEBUG Processing 435/533 atomic regions from SNP 130368 to 130968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,482 DEBUG Processing 436/533 atomic regions from SNP 130668 to 131268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,671 DEBUG Processing 437/533 atomic regions from SNP 130968 to 131568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,859 DEBUG Processing 438/533 atomic regions from SNP 131268 to 131868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,042 DEBUG Processing 439/533 atomic regions from SNP 131568 to 132168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,228 DEBUG Processing 440/533 atomic regions from SNP 131868 to 132468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,415 DEBUG Processing 441/533 atomic regions from SNP 132168 to 132768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,595 DEBUG Processing 442/533 atomic regions from SNP 132468 to 133068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,777 DEBUG Processing 443/533 atomic regions from SNP 132768 to 133368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,958 DEBUG Processing 444/533 atomic regions from SNP 133068 to 133668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,143 DEBUG Processing 445/533 atomic regions from SNP 133368 to 133968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,347 DEBUG Processing 446/533 atomic regions from SNP 133668 to 134268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,484 DEBUG Segmenting atomic regions: 2025-01-31 09:58:42,550 DEBUG Processing 447/533 atomic regions from SNP 133968 to 134568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,553 DEBUG Processing 1/521 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,745 DEBUG Processing 448/533 atomic regions from SNP 134268 to 134868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,758 DEBUG Processing 2/521 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,954 DEBUG Processing 449/533 atomic regions from SNP 134568 to 135168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,970 DEBUG Processing 3/521 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,143 DEBUG Processing 450/533 atomic regions from SNP 134868 to 135468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,158 DEBUG Processing 4/521 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,336 DEBUG Processing 451/533 atomic regions from SNP 135168 to 135768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,360 DEBUG Processing 5/521 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,528 DEBUG Processing 452/533 atomic regions from SNP 135468 to 136068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,552 DEBUG Processing 6/521 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,720 DEBUG Processing 453/533 atomic regions from SNP 135768 to 136368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,743 DEBUG Processing 7/521 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,905 DEBUG Processing 454/533 atomic regions from SNP 136068 to 136668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,929 DEBUG Processing 8/521 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,088 DEBUG Processing 455/533 atomic regions from SNP 136368 to 136968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,114 DEBUG Processing 9/521 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,276 DEBUG Processing 456/533 atomic regions from SNP 136668 to 137268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,316 DEBUG Processing 10/521 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,466 DEBUG Processing 457/533 atomic regions from SNP 136968 to 137568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,513 DEBUG Processing 11/521 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,648 DEBUG Processing 458/533 atomic regions from SNP 137268 to 137868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,716 DEBUG Processing 12/521 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,831 DEBUG Processing 459/533 atomic regions from SNP 137568 to 138168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,914 DEBUG Processing 13/521 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,017 DEBUG Processing 460/533 atomic regions from SNP 137868 to 138468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,128 DEBUG Processing 14/521 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,203 DEBUG Processing 461/533 atomic regions from SNP 138168 to 138768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,327 DEBUG Processing 15/521 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,387 DEBUG Processing 462/533 atomic regions from SNP 138468 to 139068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,515 DEBUG Processing 16/521 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,572 DEBUG Processing 463/533 atomic regions from SNP 138768 to 139368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,704 DEBUG Processing 17/521 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,760 DEBUG Processing 464/533 atomic regions from SNP 139068 to 139668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,895 DEBUG Processing 18/521 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,953 DEBUG Processing 465/533 atomic regions from SNP 139368 to 139968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,082 DEBUG Processing 19/521 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,147 DEBUG Processing 466/533 atomic regions from SNP 139668 to 140268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,265 DEBUG Processing 20/521 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,348 DEBUG Processing 467/533 atomic regions from SNP 139968 to 140568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,451 DEBUG Processing 21/521 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,554 DEBUG Processing 468/533 atomic regions from SNP 140268 to 140868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,639 DEBUG Processing 22/521 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,763 DEBUG Processing 469/533 atomic regions from SNP 140568 to 141168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,841 DEBUG Processing 23/521 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,983 DEBUG Processing 470/533 atomic regions from SNP 140868 to 141468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,042 DEBUG Processing 24/521 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,199 DEBUG Processing 471/533 atomic regions from SNP 141168 to 141768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,233 DEBUG Processing 25/521 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,393 DEBUG Processing 472/533 atomic regions from SNP 141468 to 142068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,426 DEBUG Processing 26/521 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,590 DEBUG Processing 473/533 atomic regions from SNP 141768 to 142368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,621 DEBUG Processing 27/521 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,784 DEBUG Processing 474/533 atomic regions from SNP 142068 to 142668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,814 DEBUG Processing 28/521 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,984 DEBUG Processing 475/533 atomic regions from SNP 142368 to 142968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,009 DEBUG Processing 29/521 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,205 DEBUG Processing 476/533 atomic regions from SNP 142668 to 143268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,206 DEBUG Processing 30/521 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,281 DEBUG Segmenting atomic regions: 2025-01-31 09:58:48,326 DEBUG Processing 1/348 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:48,397 DEBUG Processing 31/521 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,398 DEBUG Processing 477/533 atomic regions from SNP 142968 to 143568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,524 DEBUG Processing 2/348 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:48,597 DEBUG Processing 32/521 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,601 DEBUG Processing 478/533 atomic regions from SNP 143268 to 143868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,709 DEBUG Processing 3/348 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:48,789 DEBUG Processing 33/521 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,796 DEBUG Processing 479/533 atomic regions from SNP 143568 to 144168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,903 DEBUG Processing 4/348 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:48,980 DEBUG Processing 34/521 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,988 DEBUG Processing 480/533 atomic regions from SNP 143868 to 144468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,108 DEBUG Processing 5/348 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,168 DEBUG Processing 35/521 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,177 DEBUG Processing 481/533 atomic regions from SNP 144168 to 144768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,318 DEBUG Processing 6/348 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,356 DEBUG Processing 36/521 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,368 DEBUG Processing 482/533 atomic regions from SNP 144468 to 145068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,524 DEBUG Processing 7/348 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,545 DEBUG Processing 37/521 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,577 DEBUG Processing 483/533 atomic regions from SNP 144768 to 145368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,729 DEBUG Processing 8/348 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,729 DEBUG Processing 38/521 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,795 DEBUG Processing 484/533 atomic regions from SNP 145068 to 145668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,910 DEBUG Processing 39/521 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,925 DEBUG Processing 9/348 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,015 DEBUG Processing 485/533 atomic regions from SNP 145368 to 145968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,095 DEBUG Processing 40/521 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,118 DEBUG Processing 10/348 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,216 DEBUG Processing 486/533 atomic regions from SNP 145668 to 146268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,283 DEBUG Processing 41/521 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,314 DEBUG Processing 11/348 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,404 DEBUG Processing 487/533 atomic regions from SNP 145968 to 146568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,470 DEBUG Processing 42/521 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,507 DEBUG Processing 12/348 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,597 DEBUG Processing 488/533 atomic regions from SNP 146268 to 146868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,665 DEBUG Processing 43/521 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,720 DEBUG Processing 13/348 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,788 DEBUG Processing 489/533 atomic regions from SNP 146568 to 147168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,856 DEBUG Processing 44/521 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,906 DEBUG Processing 14/348 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,977 DEBUG Processing 490/533 atomic regions from SNP 146868 to 147468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,051 DEBUG Processing 45/521 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,114 DEBUG Processing 15/348 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,187 DEBUG Processing 491/533 atomic regions from SNP 147168 to 147768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,252 DEBUG Processing 46/521 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,324 DEBUG Processing 16/348 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,381 DEBUG Processing 492/533 atomic regions from SNP 147468 to 148068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,447 DEBUG Processing 47/521 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,534 DEBUG Processing 17/348 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,568 DEBUG Processing 493/533 atomic regions from SNP 147768 to 148368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,635 DEBUG Processing 48/521 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,741 DEBUG Processing 18/348 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,754 DEBUG Processing 494/533 atomic regions from SNP 148068 to 148668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,821 DEBUG Processing 49/521 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,942 DEBUG Processing 495/533 atomic regions from SNP 148368 to 148968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,949 DEBUG Processing 19/348 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,004 DEBUG Processing 50/521 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,129 DEBUG Processing 496/533 atomic regions from SNP 148668 to 149268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,155 DEBUG Processing 20/348 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,184 DEBUG Processing 51/521 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,317 DEBUG Processing 497/533 atomic regions from SNP 148968 to 149568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,356 DEBUG Processing 21/348 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,364 DEBUG Processing 52/521 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,514 DEBUG Processing 498/533 atomic regions from SNP 149268 to 149868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,550 DEBUG Processing 53/521 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,559 DEBUG Processing 22/348 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,706 DEBUG Processing 499/533 atomic regions from SNP 149568 to 150168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,736 DEBUG Processing 23/348 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,742 DEBUG Processing 54/521 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,902 DEBUG Processing 500/533 atomic regions from SNP 149868 to 150468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,933 DEBUG Processing 55/521 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,938 DEBUG Processing 24/348 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,095 DEBUG Processing 501/533 atomic regions from SNP 150168 to 150768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,125 DEBUG Processing 56/521 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,140 DEBUG Processing 25/348 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,283 DEBUG Processing 502/533 atomic regions from SNP 150468 to 151068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,317 DEBUG Processing 57/521 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,341 DEBUG Processing 26/348 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,469 DEBUG Processing 503/533 atomic regions from SNP 150768 to 151368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,517 DEBUG Processing 58/521 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,537 DEBUG Processing 27/348 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,655 DEBUG Processing 504/533 atomic regions from SNP 151068 to 151668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,711 DEBUG Processing 59/521 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,726 DEBUG Processing 28/348 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,838 DEBUG Processing 505/533 atomic regions from SNP 151368 to 151968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,898 DEBUG Processing 29/348 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,899 DEBUG Processing 60/521 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,023 DEBUG Processing 506/533 atomic regions from SNP 151668 to 152268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,069 DEBUG Processing 30/348 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,087 DEBUG Processing 61/521 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,211 DEBUG Processing 507/533 atomic regions from SNP 151968 to 152568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,241 DEBUG Processing 31/348 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,270 DEBUG Processing 62/521 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,407 DEBUG Processing 32/348 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,413 DEBUG Processing 508/533 atomic regions from SNP 152268 to 152868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,453 DEBUG Processing 63/521 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,583 DEBUG Processing 33/348 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,602 DEBUG Processing 509/533 atomic regions from SNP 152568 to 153168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,638 DEBUG Processing 64/521 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,783 DEBUG Processing 34/348 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,794 DEBUG Processing 510/533 atomic regions from SNP 152868 to 153468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,826 DEBUG Processing 65/521 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,983 DEBUG Processing 511/533 atomic regions from SNP 153168 to 153768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,992 DEBUG Processing 35/348 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,011 DEBUG Processing 66/521 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,174 DEBUG Processing 512/533 atomic regions from SNP 153468 to 154068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,181 DEBUG Processing 36/348 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,200 DEBUG Processing 67/521 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,353 DEBUG Processing 37/348 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,364 DEBUG Processing 513/533 atomic regions from SNP 153768 to 154368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,388 DEBUG Processing 68/521 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,519 DEBUG Processing 38/348 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,553 DEBUG Processing 514/533 atomic regions from SNP 154068 to 154668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,578 DEBUG Processing 69/521 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,695 DEBUG Processing 39/348 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,740 DEBUG Processing 515/533 atomic regions from SNP 154368 to 154968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,764 DEBUG Processing 70/521 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,895 DEBUG Processing 40/348 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,929 DEBUG Processing 516/533 atomic regions from SNP 154668 to 155268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,957 DEBUG Processing 71/521 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,117 DEBUG Processing 41/348 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,131 DEBUG Processing 517/533 atomic regions from SNP 154968 to 155568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,169 DEBUG Processing 72/521 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,315 DEBUG Processing 42/348 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,326 DEBUG Processing 518/533 atomic regions from SNP 155268 to 155868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,364 DEBUG Processing 73/521 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,506 DEBUG Processing 43/348 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,518 DEBUG Processing 519/533 atomic regions from SNP 155568 to 156168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,558 DEBUG Processing 74/521 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,702 DEBUG Processing 44/348 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,716 DEBUG Processing 520/533 atomic regions from SNP 155868 to 156468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,758 DEBUG Processing 75/521 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,893 DEBUG Processing 45/348 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,910 DEBUG Processing 521/533 atomic regions from SNP 156168 to 156768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,948 DEBUG Processing 76/521 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,098 DEBUG Processing 46/348 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,101 DEBUG Processing 522/533 atomic regions from SNP 156468 to 157068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,136 DEBUG Processing 77/521 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,272 DEBUG Processing 47/348 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,288 DEBUG Processing 523/533 atomic regions from SNP 156768 to 157368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,319 DEBUG Processing 78/521 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,448 DEBUG Processing 48/348 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,475 DEBUG Processing 524/533 atomic regions from SNP 157068 to 157668 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,506 DEBUG Processing 79/521 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,622 DEBUG Processing 49/348 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,662 DEBUG Processing 525/533 atomic regions from SNP 157368 to 157968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,695 DEBUG Processing 80/521 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,793 DEBUG Processing 50/348 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,851 DEBUG Processing 526/533 atomic regions from SNP 157668 to 158268 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,884 DEBUG Processing 81/521 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,962 DEBUG Processing 51/348 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,041 DEBUG Processing 527/533 atomic regions from SNP 157968 to 158568 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,072 DEBUG Processing 82/521 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,164 DEBUG Processing 52/348 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,235 DEBUG Processing 528/533 atomic regions from SNP 158268 to 158868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,263 DEBUG Processing 83/521 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,332 DEBUG Processing 53/348 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,424 DEBUG Processing 529/533 atomic regions from SNP 158568 to 159168 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,449 DEBUG Processing 84/521 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,501 DEBUG Processing 54/348 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,627 DEBUG Processing 530/533 atomic regions from SNP 158868 to 159468 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,642 DEBUG Processing 85/521 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,676 DEBUG Processing 55/348 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,818 DEBUG Processing 531/533 atomic regions from SNP 159168 to 159768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,832 DEBUG Processing 86/521 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,865 DEBUG Processing 56/348 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,016 DEBUG Processing 532/533 atomic regions from SNP 159468 to 160068 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,025 DEBUG Processing 87/521 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,040 DEBUG Processing 57/348 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,227 DEBUG Processing 533/533 atomic regions from SNP 159768 to 160368 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,228 DEBUG Processing 88/521 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,229 DEBUG Processing 58/348 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,372 DEBUG Unique SNPs positions in subchromosome 1: 160369 2025-01-31 09:58:59,418 DEBUG Processing 59/348 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,448 DEBUG Processing 89/521 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,597 DEBUG Processing 60/348 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,653 DEBUG Processing 90/521 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,758 DEBUG Processing 61/348 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,848 DEBUG Processing 91/521 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,928 DEBUG Processing 62/348 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,043 DEBUG Processing 92/521 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,102 DEBUG Processing 63/348 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,239 DEBUG Processing 93/521 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,279 DEBUG Processing 64/348 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,428 DEBUG Processing 94/521 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,450 DEBUG Processing 65/348 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,617 DEBUG Processing 66/348 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,620 DEBUG Processing 95/521 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,790 DEBUG Processing 67/348 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,815 DEBUG Processing 96/521 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,955 DEBUG Processing 68/348 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,002 DEBUG Processing 97/521 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,121 DEBUG Processing 69/348 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,190 DEBUG Processing 98/521 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,297 DEBUG Processing 70/348 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,380 DEBUG Processing 99/521 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,466 DEBUG Processing 71/348 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,571 DEBUG Processing 100/521 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,625 DEBUG Processing 72/348 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,762 DEBUG Processing 101/521 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,788 DEBUG Processing 73/348 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,957 DEBUG Processing 74/348 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,959 DEBUG Processing 102/521 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,130 DEBUG Processing 75/348 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,166 DEBUG Processing 103/521 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,302 DEBUG Processing 76/348 atomic regions from SNP 22575 to 23176 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,369 DEBUG Processing 104/521 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,470 DEBUG Processing 77/348 atomic regions from SNP 22876 to 23477 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,585 DEBUG Processing 105/521 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,636 DEBUG Processing 78/348 atomic regions from SNP 23177 to 23778 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,792 DEBUG Processing 106/521 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,810 DEBUG Processing 79/348 atomic regions from SNP 23478 to 24079 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,985 DEBUG Processing 80/348 atomic regions from SNP 23779 to 24380 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,011 DEBUG Processing 107/521 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,161 DEBUG Processing 81/348 atomic regions from SNP 24080 to 24681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,212 DEBUG Processing 108/521 atomic regions from SNP 32207 to 32808 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,329 DEBUG Processing 82/348 atomic regions from SNP 24381 to 24982 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,414 DEBUG Processing 109/521 atomic regions from SNP 32508 to 33109 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,493 DEBUG Processing 83/348 atomic regions from SNP 24682 to 25283 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,616 DEBUG Processing 110/521 atomic regions from SNP 32809 to 33410 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,669 DEBUG Processing 84/348 atomic regions from SNP 24983 to 25584 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,812 DEBUG Processing 111/521 atomic regions from SNP 33110 to 33711 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,851 DEBUG Processing 85/348 atomic regions from SNP 25284 to 25885 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,006 DEBUG Processing 112/521 atomic regions from SNP 33411 to 34012 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,030 DEBUG Processing 86/348 atomic regions from SNP 25585 to 26186 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,201 DEBUG Processing 113/521 atomic regions from SNP 33712 to 34313 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,204 DEBUG Processing 87/348 atomic regions from SNP 25886 to 26487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,383 DEBUG Processing 88/348 atomic regions from SNP 26187 to 26788 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,398 DEBUG Processing 114/521 atomic regions from SNP 34013 to 34614 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,561 DEBUG Processing 89/348 atomic regions from SNP 26488 to 27089 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,595 DEBUG Processing 115/521 atomic regions from SNP 34314 to 34915 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,730 DEBUG Processing 90/348 atomic regions from SNP 26789 to 27390 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,784 DEBUG Processing 116/521 atomic regions from SNP 34615 to 35216 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,917 DEBUG Processing 91/348 atomic regions from SNP 27090 to 27691 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,974 DEBUG Processing 117/521 atomic regions from SNP 34916 to 35517 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,121 DEBUG Processing 92/348 atomic regions from SNP 27391 to 27992 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,171 DEBUG Processing 118/521 atomic regions from SNP 35217 to 35818 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,299 DEBUG Processing 93/348 atomic regions from SNP 27692 to 28293 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,371 DEBUG Processing 119/521 atomic regions from SNP 35518 to 36119 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,468 DEBUG Processing 94/348 atomic regions from SNP 27993 to 28594 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,570 DEBUG Processing 120/521 atomic regions from SNP 35819 to 36420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,640 DEBUG Processing 95/348 atomic regions from SNP 28294 to 28895 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,765 DEBUG Processing 121/521 atomic regions from SNP 36120 to 36721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,812 DEBUG Processing 96/348 atomic regions from SNP 28595 to 29196 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,977 DEBUG Processing 122/521 atomic regions from SNP 36421 to 37022 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,988 DEBUG Processing 97/348 atomic regions from SNP 28896 to 29497 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,163 DEBUG Processing 98/348 atomic regions from SNP 29197 to 29798 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,195 DEBUG Processing 123/521 atomic regions from SNP 36722 to 37323 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,329 DEBUG Processing 99/348 atomic regions from SNP 29498 to 30099 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,417 DEBUG Processing 124/521 atomic regions from SNP 37023 to 37624 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,501 DEBUG Processing 100/348 atomic regions from SNP 29799 to 30400 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,629 DEBUG Processing 125/521 atomic regions from SNP 37324 to 37925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,675 DEBUG Processing 101/348 atomic regions from SNP 30100 to 30701 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,832 DEBUG Processing 126/521 atomic regions from SNP 37625 to 38226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,850 DEBUG Processing 102/348 atomic regions from SNP 30401 to 31002 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,933 DEBUG Subchromosome time: 136.4030853949953, subchromosome SNPs: 160369 2025-01-31 09:59:06,934 DEBUG Estimated BADs: [1.53, 0.31, 0.77, 4.59, 3.06, 12.25, 4.59, 1.53, 0.51, 1.53, 4.59, 0.77, 6.13, 0.38, 1.53, 0.38, 1.53, 0.38] SNP counts: [23658, 4723, 4466, 10584, 8499, 635, 4088, 986, 11927, 2154, 5949, 12837, 2739, 8121, 25488, 2403, 21292, 9820] SNP IDs counts: [23658, 4723, 4466, 10584, 8499, 635, 4088, 986, 11927, 2154, 5949, 12837, 2739, 8121, 25488, 2403, 21292, 9820] Critical gap: 526808bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 17.65Mbp, 20.46Mbp, 23.53Mbp, 29.15Mbp, 33.82Mbp, 34.16Mbp, 36.53Mbp, 37.09Mbp, 44.30Mbp, 45.45Mbp, 48.62Mbp, 55.93Mbp, 57.38Mbp, 62.14Mbp, 76.22Mbp, 77.58Mbp, 89.16Mbp, 94.99Mbp] 2025-01-31 09:59:06,934 DEBUG chr17 time: 136.40361296001356 s 2025-01-31 09:59:07,026 DEBUG Processing 103/348 atomic regions from SNP 30702 to 31303 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,034 DEBUG chr17: Fitting background model for 18 segments 2025-01-31 09:59:07,054 DEBUG Processing 127/521 atomic regions from SNP 37926 to 38527 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,200 DEBUG Processing 104/348 atomic regions from SNP 31003 to 31604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,256 DEBUG Processing 128/521 atomic regions from SNP 38227 to 38828 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,370 DEBUG Processing 105/348 atomic regions from SNP 31304 to 31905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,459 DEBUG Processing 129/521 atomic regions from SNP 38528 to 39129 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,542 DEBUG Processing 106/348 atomic regions from SNP 31605 to 32206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,662 DEBUG Processing 130/521 atomic regions from SNP 38829 to 39430 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,725 DEBUG Processing 107/348 atomic regions from SNP 31906 to 32507 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,858 DEBUG Processing 131/521 atomic regions from SNP 39130 to 39731 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,906 DEBUG Processing 108/348 atomic regions from SNP 32207 to 32808 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,063 DEBUG Processing 132/521 atomic regions from SNP 39431 to 40032 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,087 DEBUG Processing 109/348 atomic regions from SNP 32508 to 33109 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,259 DEBUG Processing 110/348 atomic regions from SNP 32809 to 33410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,271 DEBUG Processing 133/521 atomic regions from SNP 39732 to 40333 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,434 DEBUG Processing 111/348 atomic regions from SNP 33110 to 33711 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,475 DEBUG Processing 134/521 atomic regions from SNP 40033 to 40634 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,607 DEBUG Processing 112/348 atomic regions from SNP 33411 to 34012 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,676 DEBUG Processing 135/521 atomic regions from SNP 40334 to 40935 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,787 DEBUG Processing 113/348 atomic regions from SNP 33712 to 34313 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,873 DEBUG Processing 136/521 atomic regions from SNP 40635 to 41236 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,970 DEBUG Processing 114/348 atomic regions from SNP 34013 to 34614 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,073 DEBUG Processing 137/521 atomic regions from SNP 40936 to 41537 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,147 DEBUG Processing 115/348 atomic regions from SNP 34314 to 34915 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,274 DEBUG Processing 138/521 atomic regions from SNP 41237 to 41838 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,321 DEBUG Processing 116/348 atomic regions from SNP 34615 to 35216 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,480 DEBUG Processing 139/521 atomic regions from SNP 41538 to 42139 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,500 DEBUG Processing 117/348 atomic regions from SNP 34916 to 35517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,677 DEBUG Processing 140/521 atomic regions from SNP 41839 to 42440 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,700 DEBUG Processing 118/348 atomic regions from SNP 35217 to 35818 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,880 DEBUG Processing 141/521 atomic regions from SNP 42140 to 42741 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,886 DEBUG Processing 119/348 atomic regions from SNP 35518 to 36119 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,066 DEBUG Processing 120/348 atomic regions from SNP 35819 to 36420 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,084 DEBUG Processing 142/521 atomic regions from SNP 42441 to 43042 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,239 DEBUG Processing 121/348 atomic regions from SNP 36120 to 36721 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,287 DEBUG Processing 143/521 atomic regions from SNP 42742 to 43343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,416 DEBUG Processing 122/348 atomic regions from SNP 36421 to 37022 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,494 DEBUG Processing 144/521 atomic regions from SNP 43043 to 43644 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,591 DEBUG Processing 123/348 atomic regions from SNP 36722 to 37323 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,700 DEBUG Processing 145/521 atomic regions from SNP 43344 to 43945 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,763 DEBUG Processing 124/348 atomic regions from SNP 37023 to 37624 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,912 DEBUG Processing 146/521 atomic regions from SNP 43645 to 44246 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,969 DEBUG Processing 125/348 atomic regions from SNP 37324 to 37925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,119 DEBUG Processing 147/521 atomic regions from SNP 43946 to 44547 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,170 DEBUG Processing 126/348 atomic regions from SNP 37625 to 38226 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,328 DEBUG Processing 148/521 atomic regions from SNP 44247 to 44848 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,373 DEBUG Processing 127/348 atomic regions from SNP 37926 to 38527 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,536 DEBUG Processing 149/521 atomic regions from SNP 44548 to 45149 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,548 DEBUG Processing 128/348 atomic regions from SNP 38227 to 38828 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,725 DEBUG Processing 129/348 atomic regions from SNP 38528 to 39129 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,741 DEBUG Processing 150/521 atomic regions from SNP 44849 to 45450 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,901 DEBUG Processing 130/348 atomic regions from SNP 38829 to 39430 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,947 DEBUG Processing 151/521 atomic regions from SNP 45150 to 45751 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,076 DEBUG Processing 131/348 atomic regions from SNP 39130 to 39731 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,155 DEBUG Processing 152/521 atomic regions from SNP 45451 to 46052 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,252 DEBUG Processing 132/348 atomic regions from SNP 39431 to 40032 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,362 DEBUG Processing 153/521 atomic regions from SNP 45752 to 46353 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,427 DEBUG Processing 133/348 atomic regions from SNP 39732 to 40333 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,567 DEBUG Processing 154/521 atomic regions from SNP 46053 to 46654 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,602 DEBUG Processing 134/348 atomic regions from SNP 40033 to 40634 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,771 DEBUG Processing 155/521 atomic regions from SNP 46354 to 46955 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,775 DEBUG Processing 135/348 atomic regions from SNP 40334 to 40935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,948 DEBUG Processing 136/348 atomic regions from SNP 40635 to 41236 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,974 DEBUG Processing 156/521 atomic regions from SNP 46655 to 47256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,129 DEBUG Processing 137/348 atomic regions from SNP 40936 to 41537 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,180 DEBUG Processing 157/521 atomic regions from SNP 46956 to 47557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,304 DEBUG Processing 138/348 atomic regions from SNP 41237 to 41838 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,381 DEBUG Processing 158/521 atomic regions from SNP 47257 to 47858 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,475 DEBUG Processing 139/348 atomic regions from SNP 41538 to 42139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,583 DEBUG Processing 159/521 atomic regions from SNP 47558 to 48159 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,648 DEBUG Processing 140/348 atomic regions from SNP 41839 to 42440 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,782 DEBUG Processing 160/521 atomic regions from SNP 47859 to 48460 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,819 DEBUG Processing 141/348 atomic regions from SNP 42140 to 42741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,983 DEBUG Processing 161/521 atomic regions from SNP 48160 to 48761 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,990 DEBUG Processing 142/348 atomic regions from SNP 42441 to 43042 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,162 DEBUG Processing 143/348 atomic regions from SNP 42742 to 43343 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,191 DEBUG Processing 162/521 atomic regions from SNP 48461 to 49062 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,338 DEBUG Processing 144/348 atomic regions from SNP 43043 to 43644 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,398 DEBUG Processing 163/521 atomic regions from SNP 48762 to 49363 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,510 DEBUG Processing 145/348 atomic regions from SNP 43344 to 43945 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,607 DEBUG Processing 164/521 atomic regions from SNP 49063 to 49664 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,678 DEBUG Processing 146/348 atomic regions from SNP 43645 to 44246 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,810 DEBUG Processing 165/521 atomic regions from SNP 49364 to 49965 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,845 DEBUG Processing 147/348 atomic regions from SNP 43946 to 44547 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,014 DEBUG Processing 166/521 atomic regions from SNP 49665 to 50266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,019 DEBUG Processing 148/348 atomic regions from SNP 44247 to 44848 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,201 DEBUG Processing 149/348 atomic regions from SNP 44548 to 45149 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,225 DEBUG Processing 167/521 atomic regions from SNP 49966 to 50567 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,373 DEBUG Processing 150/348 atomic regions from SNP 44849 to 45450 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,445 DEBUG Processing 168/521 atomic regions from SNP 50267 to 50868 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,535 DEBUG Processing 151/348 atomic regions from SNP 45150 to 45751 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,680 DEBUG Processing 169/521 atomic regions from SNP 50568 to 51169 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,698 DEBUG Processing 152/348 atomic regions from SNP 45451 to 46052 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,857 DEBUG Processing 153/348 atomic regions from SNP 45752 to 46353 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,903 DEBUG Processing 170/521 atomic regions from SNP 50869 to 51470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,036 DEBUG Processing 154/348 atomic regions from SNP 46053 to 46654 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,105 DEBUG Processing 171/521 atomic regions from SNP 51170 to 51771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,209 DEBUG Processing 155/348 atomic regions from SNP 46354 to 46955 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,297 DEBUG Processing 172/521 atomic regions from SNP 51471 to 52072 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,369 DEBUG Processing 156/348 atomic regions from SNP 46655 to 47256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,491 DEBUG Processing 173/521 atomic regions from SNP 51772 to 52373 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,530 DEBUG Processing 157/348 atomic regions from SNP 46956 to 47557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,686 DEBUG Processing 158/348 atomic regions from SNP 47257 to 47858 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,704 DEBUG Processing 174/521 atomic regions from SNP 52073 to 52674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,841 DEBUG Processing 159/348 atomic regions from SNP 47558 to 48159 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,903 DEBUG Processing 175/521 atomic regions from SNP 52374 to 52974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,998 DEBUG Processing 160/348 atomic regions from SNP 47859 to 48460 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,099 DEBUG Processing 176/521 atomic regions from SNP 52674 to 53274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,159 DEBUG Processing 161/348 atomic regions from SNP 48160 to 48761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,291 DEBUG Processing 177/521 atomic regions from SNP 52974 to 53574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,314 DEBUG Processing 162/348 atomic regions from SNP 48461 to 49062 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,467 DEBUG Processing 163/348 atomic regions from SNP 48762 to 49363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,481 DEBUG Processing 178/521 atomic regions from SNP 53274 to 53874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,617 DEBUG Processing 164/348 atomic regions from SNP 49063 to 49664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,671 DEBUG Processing 179/521 atomic regions from SNP 53574 to 54174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,772 DEBUG Processing 165/348 atomic regions from SNP 49364 to 49965 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,857 DEBUG Processing 180/521 atomic regions from SNP 53874 to 54474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,929 DEBUG Processing 166/348 atomic regions from SNP 49665 to 50266 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,048 DEBUG Processing 181/521 atomic regions from SNP 54174 to 54774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,086 DEBUG Processing 167/348 atomic regions from SNP 49966 to 50567 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,235 DEBUG Processing 168/348 atomic regions from SNP 50267 to 50868 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,240 DEBUG Processing 182/521 atomic regions from SNP 54474 to 55074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,397 DEBUG Processing 169/348 atomic regions from SNP 50568 to 51169 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,443 DEBUG Processing 183/521 atomic regions from SNP 54774 to 55374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,548 DEBUG Processing 170/348 atomic regions from SNP 50869 to 51470 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,639 DEBUG Processing 184/521 atomic regions from SNP 55074 to 55674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,705 DEBUG Processing 171/348 atomic regions from SNP 51170 to 51771 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,852 DEBUG Processing 185/521 atomic regions from SNP 55374 to 55974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,857 DEBUG Processing 172/348 atomic regions from SNP 51471 to 52072 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,009 DEBUG Processing 173/348 atomic regions from SNP 51772 to 52373 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,071 DEBUG Processing 186/521 atomic regions from SNP 55674 to 56274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,176 DEBUG Processing 174/348 atomic regions from SNP 52073 to 52674 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,285 DEBUG Processing 187/521 atomic regions from SNP 55974 to 56574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,346 DEBUG Processing 175/348 atomic regions from SNP 52374 to 52975 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,507 DEBUG Processing 188/521 atomic regions from SNP 56274 to 56874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,509 DEBUG Processing 176/348 atomic regions from SNP 52675 to 53276 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,659 DEBUG Processing 177/348 atomic regions from SNP 52976 to 53577 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,723 DEBUG Processing 189/521 atomic regions from SNP 56574 to 57174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,816 DEBUG Processing 178/348 atomic regions from SNP 53277 to 53878 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,934 DEBUG Processing 190/521 atomic regions from SNP 56874 to 57474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,979 DEBUG Processing 179/348 atomic regions from SNP 53578 to 54179 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,124 DEBUG Processing 191/521 atomic regions from SNP 57174 to 57774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,137 DEBUG Processing 180/348 atomic regions from SNP 53879 to 54480 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,372 DEBUG Processing 192/521 atomic regions from SNP 57474 to 58074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,376 DEBUG Processing 181/348 atomic regions from SNP 54180 to 54781 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,527 DEBUG Processing 182/348 atomic regions from SNP 54481 to 55082 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,588 DEBUG Processing 193/521 atomic regions from SNP 57774 to 58374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,679 DEBUG Processing 183/348 atomic regions from SNP 54782 to 55383 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,808 DEBUG Processing 194/521 atomic regions from SNP 58074 to 58674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,839 DEBUG Processing 184/348 atomic regions from SNP 55083 to 55684 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,003 DEBUG Processing 185/348 atomic regions from SNP 55384 to 55985 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,018 DEBUG Processing 195/521 atomic regions from SNP 58374 to 58974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,163 DEBUG Processing 186/348 atomic regions from SNP 55685 to 56286 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,220 DEBUG Processing 196/521 atomic regions from SNP 58674 to 59274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,318 DEBUG Processing 187/348 atomic regions from SNP 55986 to 56587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,427 DEBUG Processing 197/521 atomic regions from SNP 58974 to 59574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,471 DEBUG Processing 188/348 atomic regions from SNP 56287 to 56888 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,626 DEBUG Processing 189/348 atomic regions from SNP 56588 to 57189 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,633 DEBUG Processing 198/521 atomic regions from SNP 59274 to 59874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,785 DEBUG Processing 190/348 atomic regions from SNP 56889 to 57490 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,858 DEBUG Processing 199/521 atomic regions from SNP 59574 to 60174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,951 DEBUG Processing 191/348 atomic regions from SNP 57190 to 57791 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,103 DEBUG Processing 200/521 atomic regions from SNP 59874 to 60474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,126 DEBUG Processing 192/348 atomic regions from SNP 57491 to 58092 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,296 DEBUG Processing 193/348 atomic regions from SNP 57792 to 58393 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,339 DEBUG Processing 201/521 atomic regions from SNP 60174 to 60774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,460 DEBUG Processing 194/348 atomic regions from SNP 58093 to 58694 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,551 DEBUG Processing 202/521 atomic regions from SNP 60474 to 61074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,636 DEBUG Processing 195/348 atomic regions from SNP 58394 to 58995 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,757 DEBUG Processing 203/521 atomic regions from SNP 60774 to 61374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,811 DEBUG Processing 196/348 atomic regions from SNP 58695 to 59296 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,954 DEBUG Processing 204/521 atomic regions from SNP 61074 to 61674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,977 DEBUG Processing 197/348 atomic regions from SNP 58996 to 59597 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,144 DEBUG Processing 198/348 atomic regions from SNP 59297 to 59898 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,147 DEBUG Processing 205/521 atomic regions from SNP 61374 to 61974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,306 DEBUG Processing 199/348 atomic regions from SNP 59598 to 60199 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,338 DEBUG Processing 206/521 atomic regions from SNP 61674 to 62274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,465 DEBUG Processing 200/348 atomic regions from SNP 59899 to 60500 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,552 DEBUG Processing 207/521 atomic regions from SNP 61974 to 62574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,643 DEBUG Processing 201/348 atomic regions from SNP 60200 to 60801 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,759 DEBUG Processing 208/521 atomic regions from SNP 62274 to 62874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,809 DEBUG Processing 202/348 atomic regions from SNP 60501 to 61102 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,972 DEBUG Processing 209/521 atomic regions from SNP 62574 to 63174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,001 DEBUG Processing 203/348 atomic regions from SNP 60802 to 61403 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,171 DEBUG Processing 204/348 atomic regions from SNP 61103 to 61704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,191 DEBUG Processing 210/521 atomic regions from SNP 62874 to 63474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,330 DEBUG Processing 205/348 atomic regions from SNP 61404 to 62005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,387 DEBUG Processing 211/521 atomic regions from SNP 63174 to 63774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,490 DEBUG Processing 206/348 atomic regions from SNP 61705 to 62306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,575 DEBUG Processing 212/521 atomic regions from SNP 63474 to 64074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,657 DEBUG Processing 207/348 atomic regions from SNP 62006 to 62607 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,771 DEBUG Processing 213/521 atomic regions from SNP 63774 to 64374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,824 DEBUG Processing 208/348 atomic regions from SNP 62307 to 62908 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,968 DEBUG Processing 214/521 atomic regions from SNP 64074 to 64674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,988 DEBUG Processing 209/348 atomic regions from SNP 62608 to 63209 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,149 DEBUG Processing 210/348 atomic regions from SNP 62909 to 63510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,173 DEBUG Processing 215/521 atomic regions from SNP 64374 to 64974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,313 DEBUG Processing 211/348 atomic regions from SNP 63210 to 63811 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,380 DEBUG Processing 216/521 atomic regions from SNP 64674 to 65274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,481 DEBUG Processing 212/348 atomic regions from SNP 63511 to 64112 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,584 DEBUG Processing 217/521 atomic regions from SNP 64974 to 65574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,653 DEBUG Processing 213/348 atomic regions from SNP 63812 to 64413 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,782 DEBUG Processing 218/521 atomic regions from SNP 65274 to 65874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,822 DEBUG Processing 214/348 atomic regions from SNP 64113 to 64714 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,988 DEBUG Processing 215/348 atomic regions from SNP 64414 to 65015 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,998 DEBUG Processing 219/521 atomic regions from SNP 65574 to 66174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,154 DEBUG Processing 216/348 atomic regions from SNP 64715 to 65316 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,206 DEBUG Processing 220/521 atomic regions from SNP 65874 to 66474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,317 DEBUG Processing 217/348 atomic regions from SNP 65016 to 65617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,414 DEBUG Processing 221/521 atomic regions from SNP 66174 to 66774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,482 DEBUG Processing 218/348 atomic regions from SNP 65317 to 65918 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,634 DEBUG Processing 222/521 atomic regions from SNP 66474 to 67074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,644 DEBUG Processing 219/348 atomic regions from SNP 65618 to 66219 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,807 DEBUG Processing 220/348 atomic regions from SNP 65919 to 66520 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,831 DEBUG Processing 223/521 atomic regions from SNP 66774 to 67374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,971 DEBUG Processing 221/348 atomic regions from SNP 66220 to 66821 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,030 DEBUG Processing 224/521 atomic regions from SNP 67074 to 67674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,150 DEBUG Processing 222/348 atomic regions from SNP 66521 to 67122 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,232 DEBUG Processing 225/521 atomic regions from SNP 67374 to 67974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,323 DEBUG Processing 223/348 atomic regions from SNP 66822 to 67423 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,431 DEBUG Processing 226/521 atomic regions from SNP 67674 to 68274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,482 DEBUG Processing 224/348 atomic regions from SNP 67123 to 67724 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,627 DEBUG Processing 227/521 atomic regions from SNP 67974 to 68574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,647 DEBUG Processing 225/348 atomic regions from SNP 67424 to 68025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,813 DEBUG Processing 226/348 atomic regions from SNP 67725 to 68326 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,822 DEBUG Processing 228/521 atomic regions from SNP 68274 to 68874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,979 DEBUG Processing 227/348 atomic regions from SNP 68026 to 68627 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,019 DEBUG Processing 229/521 atomic regions from SNP 68574 to 69174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,142 DEBUG Processing 228/348 atomic regions from SNP 68327 to 68928 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,214 DEBUG Processing 230/521 atomic regions from SNP 68874 to 69474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,320 DEBUG Processing 229/348 atomic regions from SNP 68628 to 69229 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,411 DEBUG Processing 231/521 atomic regions from SNP 69174 to 69774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,519 DEBUG Processing 230/348 atomic regions from SNP 68929 to 69530 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,610 DEBUG Processing 232/521 atomic regions from SNP 69474 to 70074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,713 DEBUG Processing 231/348 atomic regions from SNP 69230 to 69831 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,808 DEBUG Processing 233/521 atomic regions from SNP 69774 to 70374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,906 DEBUG Processing 232/348 atomic regions from SNP 69531 to 70132 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,011 DEBUG Processing 234/521 atomic regions from SNP 70074 to 70674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,074 DEBUG Processing 233/348 atomic regions from SNP 69832 to 70433 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,207 DEBUG Processing 235/521 atomic regions from SNP 70374 to 70974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,233 DEBUG Processing 234/348 atomic regions from SNP 70133 to 70734 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,398 DEBUG Processing 235/348 atomic regions from SNP 70434 to 71035 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,400 DEBUG Processing 236/521 atomic regions from SNP 70674 to 71274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,573 DEBUG Processing 236/348 atomic regions from SNP 70735 to 71336 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,595 DEBUG Processing 237/521 atomic regions from SNP 70974 to 71574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,741 DEBUG Processing 237/348 atomic regions from SNP 71036 to 71637 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,783 DEBUG Processing 238/521 atomic regions from SNP 71274 to 71874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,905 DEBUG Processing 238/348 atomic regions from SNP 71337 to 71938 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,972 DEBUG Processing 239/521 atomic regions from SNP 71574 to 72174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,066 DEBUG Processing 239/348 atomic regions from SNP 71638 to 72239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,158 DEBUG Processing 240/521 atomic regions from SNP 71874 to 72474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,238 DEBUG Processing 240/348 atomic regions from SNP 71939 to 72540 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,345 DEBUG Processing 241/521 atomic regions from SNP 72174 to 72774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,421 DEBUG Processing 241/348 atomic regions from SNP 72240 to 72841 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,537 DEBUG Processing 242/521 atomic regions from SNP 72474 to 73074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,599 DEBUG Processing 242/348 atomic regions from SNP 72541 to 73142 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,728 DEBUG Processing 243/521 atomic regions from SNP 72774 to 73374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,761 DEBUG Processing 243/348 atomic regions from SNP 72842 to 73443 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,918 DEBUG Processing 244/521 atomic regions from SNP 73074 to 73674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,929 DEBUG Processing 244/348 atomic regions from SNP 73143 to 73744 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,112 DEBUG Processing 245/521 atomic regions from SNP 73374 to 73974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,125 DEBUG Processing 245/348 atomic regions from SNP 73444 to 74045 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,312 DEBUG Processing 246/521 atomic regions from SNP 73674 to 74274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,331 DEBUG Processing 246/348 atomic regions from SNP 73745 to 74346 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,517 DEBUG Processing 247/521 atomic regions from SNP 73974 to 74574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,531 DEBUG Processing 247/348 atomic regions from SNP 74046 to 74647 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,701 DEBUG Processing 248/348 atomic regions from SNP 74347 to 74948 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,719 DEBUG Processing 248/521 atomic regions from SNP 74274 to 74874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,876 DEBUG Processing 249/348 atomic regions from SNP 74648 to 75249 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,923 DEBUG Processing 249/521 atomic regions from SNP 74574 to 75174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,076 DEBUG Processing 250/348 atomic regions from SNP 74949 to 75550 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,124 DEBUG Processing 250/521 atomic regions from SNP 74874 to 75474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,258 DEBUG Processing 251/348 atomic regions from SNP 75250 to 75851 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,322 DEBUG Processing 251/521 atomic regions from SNP 75174 to 75774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,420 DEBUG Processing 252/348 atomic regions from SNP 75551 to 76152 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,511 DEBUG Processing 252/521 atomic regions from SNP 75474 to 76074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,601 DEBUG Processing 253/348 atomic regions from SNP 75852 to 76453 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,703 DEBUG Processing 253/521 atomic regions from SNP 75774 to 76374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,787 DEBUG Processing 254/348 atomic regions from SNP 76153 to 76754 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,892 DEBUG Processing 254/521 atomic regions from SNP 76074 to 76674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,961 DEBUG Processing 255/348 atomic regions from SNP 76454 to 77055 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,078 DEBUG Processing 255/521 atomic regions from SNP 76374 to 76974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,144 DEBUG Processing 256/348 atomic regions from SNP 76755 to 77356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,262 DEBUG Processing 256/521 atomic regions from SNP 76674 to 77274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,341 DEBUG Processing 257/348 atomic regions from SNP 77056 to 77657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,454 DEBUG Processing 257/521 atomic regions from SNP 76974 to 77574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,541 DEBUG Processing 258/348 atomic regions from SNP 77357 to 77958 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,655 DEBUG Processing 258/521 atomic regions from SNP 77274 to 77874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,747 DEBUG Processing 259/348 atomic regions from SNP 77658 to 78259 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,858 DEBUG Processing 259/521 atomic regions from SNP 77574 to 78174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,935 DEBUG Processing 260/348 atomic regions from SNP 77959 to 78560 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,048 DEBUG Processing 260/521 atomic regions from SNP 77874 to 78474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,116 DEBUG Processing 261/348 atomic regions from SNP 78260 to 78861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,237 DEBUG Processing 261/521 atomic regions from SNP 78174 to 78774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,306 DEBUG Processing 262/348 atomic regions from SNP 78561 to 79162 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,435 DEBUG Processing 262/521 atomic regions from SNP 78474 to 79074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,507 DEBUG Processing 263/348 atomic regions from SNP 78862 to 79463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,653 DEBUG Processing 263/521 atomic regions from SNP 78774 to 79374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,676 DEBUG Processing 264/348 atomic regions from SNP 79163 to 79764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,842 DEBUG Processing 265/348 atomic regions from SNP 79464 to 80065 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,865 DEBUG Processing 264/521 atomic regions from SNP 79074 to 79674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,008 DEBUG Processing 266/348 atomic regions from SNP 79765 to 80366 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,053 DEBUG Processing 265/521 atomic regions from SNP 79374 to 79974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,174 DEBUG Processing 267/348 atomic regions from SNP 80066 to 80667 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,243 DEBUG Processing 266/521 atomic regions from SNP 79674 to 80274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,337 DEBUG Processing 268/348 atomic regions from SNP 80367 to 80968 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,434 DEBUG Processing 267/521 atomic regions from SNP 79974 to 80574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,491 DEBUG Processing 269/348 atomic regions from SNP 80668 to 81269 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,623 DEBUG Processing 268/521 atomic regions from SNP 80274 to 80874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,650 DEBUG Processing 270/348 atomic regions from SNP 80969 to 81570 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,803 DEBUG Processing 269/521 atomic regions from SNP 80574 to 81174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,812 DEBUG Processing 271/348 atomic regions from SNP 81270 to 81871 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,969 DEBUG Processing 272/348 atomic regions from SNP 81571 to 82172 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,975 DEBUG Processing 270/521 atomic regions from SNP 80874 to 81474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,120 DEBUG Processing 273/348 atomic regions from SNP 81872 to 82473 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,147 DEBUG Processing 271/521 atomic regions from SNP 81174 to 81774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,272 DEBUG Processing 274/348 atomic regions from SNP 82173 to 82774 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,322 DEBUG Processing 272/521 atomic regions from SNP 81474 to 82074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,429 DEBUG Processing 275/348 atomic regions from SNP 82474 to 83075 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,500 DEBUG Processing 273/521 atomic regions from SNP 81774 to 82374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,590 DEBUG Processing 276/348 atomic regions from SNP 82775 to 83376 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,678 DEBUG Processing 274/521 atomic regions from SNP 82074 to 82674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,751 DEBUG Processing 277/348 atomic regions from SNP 83076 to 83677 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,857 DEBUG Processing 275/521 atomic regions from SNP 82374 to 82974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,911 DEBUG Processing 278/348 atomic regions from SNP 83377 to 83978 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,033 DEBUG Processing 276/521 atomic regions from SNP 82674 to 83274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,063 DEBUG Processing 279/348 atomic regions from SNP 83678 to 84279 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,208 DEBUG Processing 277/521 atomic regions from SNP 82974 to 83574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,215 DEBUG Processing 280/348 atomic regions from SNP 83979 to 84580 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,375 DEBUG Processing 281/348 atomic regions from SNP 84280 to 84881 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,416 DEBUG Processing 278/521 atomic regions from SNP 83274 to 83874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,537 DEBUG Processing 282/348 atomic regions from SNP 84581 to 85181 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,596 DEBUG Processing 279/521 atomic regions from SNP 83574 to 84174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,703 DEBUG Processing 283/348 atomic regions from SNP 84881 to 85481 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,787 DEBUG Processing 280/521 atomic regions from SNP 83874 to 84474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,866 DEBUG Processing 284/348 atomic regions from SNP 85181 to 85781 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,971 DEBUG Processing 281/521 atomic regions from SNP 84174 to 84774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,026 DEBUG Processing 285/348 atomic regions from SNP 85481 to 86081 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,151 DEBUG Processing 282/521 atomic regions from SNP 84474 to 85074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,187 DEBUG Processing 286/348 atomic regions from SNP 85781 to 86381 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,332 DEBUG Processing 283/521 atomic regions from SNP 84774 to 85374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,350 DEBUG Processing 287/348 atomic regions from SNP 86081 to 86681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,513 DEBUG Processing 284/521 atomic regions from SNP 85074 to 85674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,521 DEBUG Processing 288/348 atomic regions from SNP 86381 to 86981 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,688 DEBUG Processing 289/348 atomic regions from SNP 86681 to 87281 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,692 DEBUG Processing 285/521 atomic regions from SNP 85374 to 85974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,865 DEBUG Processing 290/348 atomic regions from SNP 86981 to 87581 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,875 DEBUG Processing 286/521 atomic regions from SNP 85674 to 86274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,038 DEBUG Processing 291/348 atomic regions from SNP 87281 to 87881 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,069 DEBUG Processing 287/521 atomic regions from SNP 85974 to 86574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,209 DEBUG Processing 292/348 atomic regions from SNP 87581 to 88181 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,274 DEBUG Processing 288/521 atomic regions from SNP 86274 to 86874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,382 DEBUG Processing 293/348 atomic regions from SNP 87881 to 88481 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,472 DEBUG Processing 289/521 atomic regions from SNP 86574 to 87174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,557 DEBUG Processing 294/348 atomic regions from SNP 88181 to 88781 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,677 DEBUG Processing 290/521 atomic regions from SNP 86874 to 87474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,729 DEBUG Processing 295/348 atomic regions from SNP 88481 to 89081 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,878 DEBUG Processing 291/521 atomic regions from SNP 87174 to 87774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,902 DEBUG Processing 296/348 atomic regions from SNP 88781 to 89381 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,087 DEBUG Processing 297/348 atomic regions from SNP 89081 to 89681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,100 DEBUG Processing 292/521 atomic regions from SNP 87474 to 88074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,254 DEBUG Processing 298/348 atomic regions from SNP 89381 to 89981 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,293 DEBUG Processing 293/521 atomic regions from SNP 87774 to 88374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,420 DEBUG Processing 299/348 atomic regions from SNP 89681 to 90281 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,480 DEBUG Processing 294/521 atomic regions from SNP 88074 to 88674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,617 DEBUG Processing 300/348 atomic regions from SNP 89981 to 90581 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,667 DEBUG Processing 295/521 atomic regions from SNP 88374 to 88974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,804 DEBUG Processing 301/348 atomic regions from SNP 90281 to 90881 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,855 DEBUG Processing 296/521 atomic regions from SNP 88674 to 89274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,963 DEBUG Processing 302/348 atomic regions from SNP 90581 to 91181 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,034 DEBUG Processing 297/521 atomic regions from SNP 88974 to 89574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,145 DEBUG Processing 303/348 atomic regions from SNP 90881 to 91481 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,212 DEBUG Processing 298/521 atomic regions from SNP 89274 to 89874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,328 DEBUG Processing 304/348 atomic regions from SNP 91181 to 91781 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,387 DEBUG Processing 299/521 atomic regions from SNP 89574 to 90174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,487 DEBUG Processing 305/348 atomic regions from SNP 91481 to 92081 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,558 DEBUG Processing 300/521 atomic regions from SNP 89874 to 90474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,643 DEBUG Processing 306/348 atomic regions from SNP 91781 to 92381 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,735 DEBUG Processing 301/521 atomic regions from SNP 90174 to 90774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,798 DEBUG Processing 307/348 atomic regions from SNP 92081 to 92681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,913 DEBUG Processing 302/521 atomic regions from SNP 90474 to 91074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,956 DEBUG Processing 308/348 atomic regions from SNP 92381 to 92981 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,093 DEBUG Processing 303/521 atomic regions from SNP 90774 to 91374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,114 DEBUG Processing 309/348 atomic regions from SNP 92681 to 93281 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,270 DEBUG Processing 304/521 atomic regions from SNP 91074 to 91674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,279 DEBUG Processing 310/348 atomic regions from SNP 92981 to 93581 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,444 DEBUG Processing 311/348 atomic regions from SNP 93281 to 93881 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,447 DEBUG Processing 305/521 atomic regions from SNP 91374 to 91974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,628 DEBUG Processing 312/348 atomic regions from SNP 93581 to 94181 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,644 DEBUG Processing 306/521 atomic regions from SNP 91674 to 92274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,795 DEBUG Processing 313/348 atomic regions from SNP 93881 to 94481 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,835 DEBUG Processing 307/521 atomic regions from SNP 91974 to 92574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,964 DEBUG Processing 314/348 atomic regions from SNP 94181 to 94781 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,028 DEBUG Processing 308/521 atomic regions from SNP 92274 to 92874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,130 DEBUG Processing 315/348 atomic regions from SNP 94481 to 95081 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,220 DEBUG Processing 309/521 atomic regions from SNP 92574 to 93174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,294 DEBUG Processing 316/348 atomic regions from SNP 94781 to 95381 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,416 DEBUG Processing 310/521 atomic regions from SNP 92874 to 93474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,466 DEBUG Processing 317/348 atomic regions from SNP 95081 to 95681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,612 DEBUG Processing 311/521 atomic regions from SNP 93174 to 93774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,646 DEBUG Processing 318/348 atomic regions from SNP 95381 to 95981 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,809 DEBUG Processing 312/521 atomic regions from SNP 93474 to 94074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,823 DEBUG Processing 319/348 atomic regions from SNP 95681 to 96281 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,005 DEBUG Processing 313/521 atomic regions from SNP 93774 to 94374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,005 DEBUG Processing 320/348 atomic regions from SNP 95981 to 96581 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,191 DEBUG Processing 321/348 atomic regions from SNP 96281 to 96881 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,203 DEBUG Processing 314/521 atomic regions from SNP 94074 to 94674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,364 DEBUG Processing 322/348 atomic regions from SNP 96581 to 97181 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,408 DEBUG Processing 315/521 atomic regions from SNP 94374 to 94974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,530 DEBUG Processing 323/348 atomic regions from SNP 96881 to 97481 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,606 DEBUG Processing 316/521 atomic regions from SNP 94674 to 95274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,694 DEBUG Processing 324/348 atomic regions from SNP 97181 to 97781 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,799 DEBUG Processing 317/521 atomic regions from SNP 94974 to 95574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,864 DEBUG Processing 325/348 atomic regions from SNP 97481 to 98081 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,000 DEBUG Processing 318/521 atomic regions from SNP 95274 to 95874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,041 DEBUG Processing 326/348 atomic regions from SNP 97781 to 98381 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,218 DEBUG Processing 319/521 atomic regions from SNP 95574 to 96174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,219 DEBUG Processing 327/348 atomic regions from SNP 98081 to 98681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,395 DEBUG Processing 328/348 atomic regions from SNP 98381 to 98981 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,435 DEBUG Processing 320/521 atomic regions from SNP 95874 to 96474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,565 DEBUG Processing 329/348 atomic regions from SNP 98681 to 99281 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,644 DEBUG Processing 321/521 atomic regions from SNP 96174 to 96774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,727 DEBUG Processing 330/348 atomic regions from SNP 98981 to 99581 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,831 DEBUG Processing 322/521 atomic regions from SNP 96474 to 97074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,899 DEBUG Processing 331/348 atomic regions from SNP 99281 to 99881 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,019 DEBUG Processing 323/521 atomic regions from SNP 96774 to 97374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,069 DEBUG Processing 332/348 atomic regions from SNP 99581 to 100181 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,219 DEBUG Processing 324/521 atomic regions from SNP 97074 to 97674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,253 DEBUG Processing 333/348 atomic regions from SNP 99881 to 100481 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,410 DEBUG Processing 325/521 atomic regions from SNP 97374 to 97974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,421 DEBUG Processing 334/348 atomic regions from SNP 100181 to 100781 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,588 DEBUG Processing 335/348 atomic regions from SNP 100481 to 101081 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,605 DEBUG Processing 326/521 atomic regions from SNP 97674 to 98274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,757 DEBUG Processing 336/348 atomic regions from SNP 100781 to 101381 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,803 DEBUG Processing 327/521 atomic regions from SNP 97974 to 98574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,927 DEBUG Processing 337/348 atomic regions from SNP 101081 to 101681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,003 DEBUG Processing 328/521 atomic regions from SNP 98274 to 98874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,114 DEBUG Processing 338/348 atomic regions from SNP 101381 to 101981 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,197 DEBUG Processing 329/521 atomic regions from SNP 98574 to 99174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,286 DEBUG Processing 339/348 atomic regions from SNP 101681 to 102281 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,396 DEBUG Processing 330/521 atomic regions from SNP 98874 to 99474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,458 DEBUG Processing 340/348 atomic regions from SNP 101981 to 102581 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,593 DEBUG Processing 331/521 atomic regions from SNP 99174 to 99774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,619 DEBUG Processing 341/348 atomic regions from SNP 102281 to 102881 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,790 DEBUG Processing 342/348 atomic regions from SNP 102581 to 103181 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,790 DEBUG Processing 332/521 atomic regions from SNP 99474 to 100074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,955 DEBUG Processing 343/348 atomic regions from SNP 102881 to 103481 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,983 DEBUG Processing 333/521 atomic regions from SNP 99774 to 100374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,125 DEBUG Processing 344/348 atomic regions from SNP 103181 to 103781 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,184 DEBUG Processing 334/521 atomic regions from SNP 100074 to 100674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,285 DEBUG Processing 345/348 atomic regions from SNP 103481 to 104081 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,375 DEBUG Processing 335/521 atomic regions from SNP 100374 to 100974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,457 DEBUG Processing 346/348 atomic regions from SNP 103781 to 104381 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,577 DEBUG Processing 336/521 atomic regions from SNP 100674 to 101274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,639 DEBUG Processing 347/348 atomic regions from SNP 104081 to 104681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,769 DEBUG Processing 337/521 atomic regions from SNP 100974 to 101574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,804 DEBUG Processing 348/348 atomic regions from SNP 104381 to 104981 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,933 DEBUG Unique SNPs positions in subchromosome 1: 104982 2025-01-31 09:59:48,961 DEBUG Processing 338/521 atomic regions from SNP 101274 to 101874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,149 DEBUG Processing 339/521 atomic regions from SNP 101574 to 102174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,334 DEBUG Processing 340/521 atomic regions from SNP 101874 to 102474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,521 DEBUG Processing 341/521 atomic regions from SNP 102174 to 102774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,721 DEBUG Processing 342/521 atomic regions from SNP 102474 to 103074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,942 DEBUG Processing 343/521 atomic regions from SNP 102774 to 103374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,155 DEBUG Processing 344/521 atomic regions from SNP 103074 to 103674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,360 DEBUG Processing 345/521 atomic regions from SNP 103374 to 103974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,577 DEBUG Processing 346/521 atomic regions from SNP 103674 to 104274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,790 DEBUG Processing 347/521 atomic regions from SNP 103974 to 104574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,014 DEBUG Processing 348/521 atomic regions from SNP 104274 to 104874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,017 DEBUG Subchromosome time: 75.79740091401618, subchromosome SNPs: 104982 2025-01-31 09:59:51,018 DEBUG Estimated BADs: [7.06, 0.88, 10.58, 3.53, 0.88, 3.53, 0.88, 1.76, 0.88, 3.53, 0.88, 1.76, 0.59, 1.76, 3.53, 1.76, 0.35, 1.76] SNP counts: [8266, 1562, 833, 2902, 975, 817, 6113, 3612, 11742, 1789, 6336, 9333, 3594, 10871, 9916, 4517, 5091, 16713] SNP IDs counts: [8266, 1562, 833, 2902, 975, 817, 6113, 3612, 11742, 1789, 6336, 9333, 3594, 10871, 9916, 4517, 5091, 16713] Critical gap: 412489bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 7.62Mbp, 8.70Mbp, 9.14Mbp, 10.98Mbp, 11.56Mbp, 12.02Mbp, 15.53Mbp, 17.47Mbp, 23.97Mbp, 24.94Mbp, 28.41Mbp, 33.44Mbp, 35.61Mbp, 41.72Mbp, 46.98Mbp, 49.44Mbp, 52.35Mbp, 61.43Mbp] 2025-01-31 09:59:51,018 DEBUG chr19 time: 75.79791662795469 s 2025-01-31 09:59:51,080 DEBUG chr19: Fitting background model for 18 segments 2025-01-31 09:59:51,232 DEBUG Processing 349/521 atomic regions from SNP 104574 to 105174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,446 DEBUG Processing 350/521 atomic regions from SNP 104874 to 105474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,634 DEBUG Processing 351/521 atomic regions from SNP 105174 to 105774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,822 DEBUG Processing 352/521 atomic regions from SNP 105474 to 106074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,010 DEBUG Processing 353/521 atomic regions from SNP 105774 to 106374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,196 DEBUG Processing 354/521 atomic regions from SNP 106074 to 106674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,393 DEBUG Processing 355/521 atomic regions from SNP 106374 to 106974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,597 DEBUG Processing 356/521 atomic regions from SNP 106674 to 107274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,789 DEBUG Processing 357/521 atomic regions from SNP 106974 to 107574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,971 DEBUG Processing 358/521 atomic regions from SNP 107274 to 107874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,158 DEBUG Processing 359/521 atomic regions from SNP 107574 to 108174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,346 DEBUG Processing 360/521 atomic regions from SNP 107874 to 108474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,529 DEBUG Processing 361/521 atomic regions from SNP 108174 to 108774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,737 DEBUG Processing 362/521 atomic regions from SNP 108474 to 109074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,923 DEBUG Processing 363/521 atomic regions from SNP 108774 to 109374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,101 DEBUG Processing 364/521 atomic regions from SNP 109074 to 109674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,287 DEBUG Processing 365/521 atomic regions from SNP 109374 to 109974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,479 DEBUG Processing 366/521 atomic regions from SNP 109674 to 110274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,689 DEBUG Processing 367/521 atomic regions from SNP 109974 to 110574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,884 DEBUG Processing 368/521 atomic regions from SNP 110274 to 110874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,066 DEBUG Processing 369/521 atomic regions from SNP 110574 to 111174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,253 DEBUG Processing 370/521 atomic regions from SNP 110874 to 111474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,436 DEBUG Processing 371/521 atomic regions from SNP 111174 to 111774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,622 DEBUG Processing 372/521 atomic regions from SNP 111474 to 112074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,810 DEBUG Processing 373/521 atomic regions from SNP 111774 to 112374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,000 DEBUG Processing 374/521 atomic regions from SNP 112074 to 112674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,186 DEBUG Processing 375/521 atomic regions from SNP 112374 to 112974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,375 DEBUG Processing 376/521 atomic regions from SNP 112674 to 113274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,561 DEBUG Processing 377/521 atomic regions from SNP 112974 to 113574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,754 DEBUG Processing 378/521 atomic regions from SNP 113274 to 113874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,950 DEBUG Processing 379/521 atomic regions from SNP 113574 to 114174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,137 DEBUG Processing 380/521 atomic regions from SNP 113874 to 114474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,328 DEBUG Processing 381/521 atomic regions from SNP 114174 to 114774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,522 DEBUG Processing 382/521 atomic regions from SNP 114474 to 115074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,711 DEBUG Processing 383/521 atomic regions from SNP 114774 to 115374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,928 DEBUG Processing 384/521 atomic regions from SNP 115074 to 115674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,155 DEBUG Processing 385/521 atomic regions from SNP 115374 to 115974 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,375 DEBUG Processing 386/521 atomic regions from SNP 115674 to 116274 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,600 DEBUG Processing 387/521 atomic regions from SNP 115974 to 116574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,815 DEBUG Processing 388/521 atomic regions from SNP 116274 to 116874 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,013 DEBUG Processing 389/521 atomic regions from SNP 116574 to 117174 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,209 DEBUG Processing 390/521 atomic regions from SNP 116874 to 117474 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,402 DEBUG Processing 391/521 atomic regions from SNP 117174 to 117774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,591 DEBUG Processing 392/521 atomic regions from SNP 117474 to 118074 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,778 DEBUG Processing 393/521 atomic regions from SNP 117774 to 118374 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,966 DEBUG Processing 394/521 atomic regions from SNP 118074 to 118674 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,154 DEBUG Processing 395/521 atomic regions from SNP 118374 to 118974 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,343 DEBUG Processing 396/521 atomic regions from SNP 118674 to 119274 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,534 DEBUG Processing 397/521 atomic regions from SNP 118974 to 119574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,723 DEBUG Processing 398/521 atomic regions from SNP 119274 to 119874 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,920 DEBUG Processing 399/521 atomic regions from SNP 119574 to 120174 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,119 DEBUG Processing 400/521 atomic regions from SNP 119874 to 120474 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,307 DEBUG Processing 401/521 atomic regions from SNP 120174 to 120774 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,496 DEBUG Processing 402/521 atomic regions from SNP 120474 to 121074 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,691 DEBUG Processing 403/521 atomic regions from SNP 120774 to 121374 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,921 DEBUG Processing 404/521 atomic regions from SNP 121074 to 121674 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,159 DEBUG Processing 405/521 atomic regions from SNP 121374 to 121974 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,382 DEBUG Processing 406/521 atomic regions from SNP 121674 to 122274 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,587 DEBUG Processing 407/521 atomic regions from SNP 121974 to 122574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,796 DEBUG Processing 408/521 atomic regions from SNP 122274 to 122874 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,018 DEBUG Processing 409/521 atomic regions from SNP 122574 to 123174 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,220 DEBUG Processing 410/521 atomic regions from SNP 122874 to 123474 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,418 DEBUG Processing 411/521 atomic regions from SNP 123174 to 123774 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,610 DEBUG Processing 412/521 atomic regions from SNP 123474 to 124074 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,807 DEBUG Processing 413/521 atomic regions from SNP 123774 to 124374 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,991 DEBUG Processing 414/521 atomic regions from SNP 124074 to 124674 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,182 DEBUG Processing 415/521 atomic regions from SNP 124374 to 124974 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,370 DEBUG Processing 416/521 atomic regions from SNP 124674 to 125274 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,561 DEBUG Processing 417/521 atomic regions from SNP 124974 to 125574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,751 DEBUG Processing 418/521 atomic regions from SNP 125274 to 125874 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,933 DEBUG Processing 419/521 atomic regions from SNP 125574 to 126174 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,119 DEBUG Processing 420/521 atomic regions from SNP 125874 to 126474 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,306 DEBUG Processing 421/521 atomic regions from SNP 126174 to 126774 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,499 DEBUG Processing 422/521 atomic regions from SNP 126474 to 127074 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,714 DEBUG Processing 423/521 atomic regions from SNP 126774 to 127374 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,921 DEBUG Processing 424/521 atomic regions from SNP 127074 to 127674 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,106 DEBUG Processing 425/521 atomic regions from SNP 127374 to 127974 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,291 DEBUG Processing 426/521 atomic regions from SNP 127674 to 128274 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,481 DEBUG Processing 427/521 atomic regions from SNP 127974 to 128574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,663 DEBUG Processing 428/521 atomic regions from SNP 128274 to 128874 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,862 DEBUG Processing 429/521 atomic regions from SNP 128574 to 129174 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,088 DEBUG Processing 430/521 atomic regions from SNP 128874 to 129474 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,299 DEBUG Processing 431/521 atomic regions from SNP 129174 to 129774 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,489 DEBUG Processing 432/521 atomic regions from SNP 129474 to 130074 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,687 DEBUG Processing 433/521 atomic regions from SNP 129774 to 130374 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,879 DEBUG Processing 434/521 atomic regions from SNP 130074 to 130674 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,077 DEBUG Processing 435/521 atomic regions from SNP 130374 to 130974 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,274 DEBUG Processing 436/521 atomic regions from SNP 130674 to 131274 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,457 DEBUG Processing 437/521 atomic regions from SNP 130974 to 131574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,638 DEBUG Processing 438/521 atomic regions from SNP 131274 to 131874 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,841 DEBUG Processing 439/521 atomic regions from SNP 131574 to 132174 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,045 DEBUG Processing 440/521 atomic regions from SNP 131874 to 132474 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,238 DEBUG Processing 441/521 atomic regions from SNP 132174 to 132774 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,428 DEBUG Processing 442/521 atomic regions from SNP 132474 to 133074 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,628 DEBUG Processing 443/521 atomic regions from SNP 132774 to 133374 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,841 DEBUG Processing 444/521 atomic regions from SNP 133074 to 133674 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,040 DEBUG Processing 445/521 atomic regions from SNP 133374 to 133974 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,212 DEBUG Processing 446/521 atomic regions from SNP 133674 to 134274 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,394 DEBUG Processing 447/521 atomic regions from SNP 133974 to 134574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,620 DEBUG Processing 448/521 atomic regions from SNP 134274 to 134874 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,809 DEBUG Processing 449/521 atomic regions from SNP 134574 to 135174 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,009 DEBUG Processing 450/521 atomic regions from SNP 134874 to 135474 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,191 DEBUG Processing 451/521 atomic regions from SNP 135174 to 135774 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,362 DEBUG Processing 452/521 atomic regions from SNP 135474 to 136074 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,532 DEBUG Processing 453/521 atomic regions from SNP 135774 to 136374 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,704 DEBUG Processing 454/521 atomic regions from SNP 136074 to 136674 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,876 DEBUG Processing 455/521 atomic regions from SNP 136374 to 136974 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,047 DEBUG Processing 456/521 atomic regions from SNP 136674 to 137274 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,219 DEBUG Processing 457/521 atomic regions from SNP 136974 to 137574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,390 DEBUG Processing 458/521 atomic regions from SNP 137274 to 137874 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,565 DEBUG Processing 459/521 atomic regions from SNP 137574 to 138174 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,735 DEBUG Processing 460/521 atomic regions from SNP 137874 to 138474 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,908 DEBUG Processing 461/521 atomic regions from SNP 138174 to 138774 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,109 DEBUG Processing 462/521 atomic regions from SNP 138474 to 139074 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,309 DEBUG Processing 463/521 atomic regions from SNP 138774 to 139374 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,488 DEBUG Processing 464/521 atomic regions from SNP 139074 to 139674 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,661 DEBUG Processing 465/521 atomic regions from SNP 139374 to 139974 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,833 DEBUG Processing 466/521 atomic regions from SNP 139674 to 140274 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,005 DEBUG Processing 467/521 atomic regions from SNP 139974 to 140574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,176 DEBUG Processing 468/521 atomic regions from SNP 140274 to 140874 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,348 DEBUG Processing 469/521 atomic regions from SNP 140574 to 141174 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,520 DEBUG Processing 470/521 atomic regions from SNP 140874 to 141474 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,688 DEBUG Processing 471/521 atomic regions from SNP 141174 to 141774 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,857 DEBUG Processing 472/521 atomic regions from SNP 141474 to 142074 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,030 DEBUG Processing 473/521 atomic regions from SNP 141774 to 142374 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,203 DEBUG Processing 474/521 atomic regions from SNP 142074 to 142674 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,374 DEBUG Processing 475/521 atomic regions from SNP 142374 to 142974 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,547 DEBUG Processing 476/521 atomic regions from SNP 142674 to 143274 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,725 DEBUG Processing 477/521 atomic regions from SNP 142974 to 143574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,910 DEBUG Processing 478/521 atomic regions from SNP 143274 to 143874 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,078 DEBUG Processing 479/521 atomic regions from SNP 143574 to 144174 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,244 DEBUG Processing 480/521 atomic regions from SNP 143874 to 144474 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,418 DEBUG Processing 481/521 atomic regions from SNP 144174 to 144774 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,589 DEBUG Processing 482/521 atomic regions from SNP 144474 to 145074 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,757 DEBUG Processing 483/521 atomic regions from SNP 144774 to 145374 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,928 DEBUG Processing 484/521 atomic regions from SNP 145074 to 145674 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,098 DEBUG Processing 485/521 atomic regions from SNP 145374 to 145974 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,269 DEBUG Processing 486/521 atomic regions from SNP 145674 to 146274 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,442 DEBUG Processing 487/521 atomic regions from SNP 145974 to 146574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,616 DEBUG Processing 488/521 atomic regions from SNP 146274 to 146874 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,793 DEBUG Processing 489/521 atomic regions from SNP 146574 to 147174 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,967 DEBUG Processing 490/521 atomic regions from SNP 146874 to 147474 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,148 DEBUG Processing 491/521 atomic regions from SNP 147174 to 147774 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,338 DEBUG Processing 492/521 atomic regions from SNP 147474 to 148074 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,514 DEBUG Processing 493/521 atomic regions from SNP 147774 to 148374 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,687 DEBUG Processing 494/521 atomic regions from SNP 148074 to 148674 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,856 DEBUG Processing 495/521 atomic regions from SNP 148374 to 148974 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,026 DEBUG Processing 496/521 atomic regions from SNP 148674 to 149274 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,200 DEBUG Processing 497/521 atomic regions from SNP 148974 to 149574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,374 DEBUG Processing 498/521 atomic regions from SNP 149274 to 149874 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,548 DEBUG Processing 499/521 atomic regions from SNP 149574 to 150174 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,718 DEBUG Processing 500/521 atomic regions from SNP 149874 to 150474 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,902 DEBUG Processing 501/521 atomic regions from SNP 150174 to 150774 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,073 DEBUG Processing 502/521 atomic regions from SNP 150474 to 151074 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,245 DEBUG Processing 503/521 atomic regions from SNP 150774 to 151374 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,414 DEBUG Processing 504/521 atomic regions from SNP 151074 to 151674 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,587 DEBUG Processing 505/521 atomic regions from SNP 151374 to 151974 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,759 DEBUG Processing 506/521 atomic regions from SNP 151674 to 152274 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,930 DEBUG Processing 507/521 atomic regions from SNP 151974 to 152574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,101 DEBUG Processing 508/521 atomic regions from SNP 152274 to 152874 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,270 DEBUG Processing 509/521 atomic regions from SNP 152574 to 153174 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,442 DEBUG Processing 510/521 atomic regions from SNP 152874 to 153474 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,613 DEBUG Processing 511/521 atomic regions from SNP 153174 to 153774 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,785 DEBUG Processing 512/521 atomic regions from SNP 153474 to 154074 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,958 DEBUG Processing 513/521 atomic regions from SNP 153774 to 154374 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,128 DEBUG Processing 514/521 atomic regions from SNP 154074 to 154674 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,298 DEBUG Processing 515/521 atomic regions from SNP 154374 to 154974 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,470 DEBUG Processing 516/521 atomic regions from SNP 154674 to 155274 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,639 DEBUG Processing 517/521 atomic regions from SNP 154974 to 155574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,811 DEBUG Processing 518/521 atomic regions from SNP 155274 to 155874 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,982 DEBUG Processing 519/521 atomic regions from SNP 155574 to 156174 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,155 DEBUG Processing 520/521 atomic regions from SNP 155874 to 156474 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,323 DEBUG Processing 521/521 atomic regions from SNP 156174 to 156774 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,429 DEBUG Unique SNPs positions in subchromosome 1: 156775 2025-01-31 10:00:24,237 DEBUG Subchromosome time: 120.84654952900019, subchromosome SNPs: 156775 2025-01-31 10:00:24,237 DEBUG Estimated BADs: [1.32, 0.66, 1.32, 3.96, 0.66, 5.28, 1.32, 2.64, 1.32, 5.28, 1.32, 7.92, 0.66, 2.64, 1.32, 0.66] SNP counts: [16958, 11126, 27100, 4910, 1688, 914, 39748, 6146, 6430, 1054, 4990, 182, 5582, 7899, 14300, 7748] SNP IDs counts: [16958, 11126, 27100, 4910, 1688, 914, 39748, 6146, 6430, 1054, 4990, 182, 5582, 7899, 14300, 7748] Critical gap: 507957bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 12.74Mbp, 19.05Mbp, 34.24Mbp, 36.80Mbp, 37.82Mbp, 38.30Mbp, 60.48Mbp, 63.75Mbp, 67.20Mbp, 67.75Mbp, 70.47Mbp, 70.58Mbp, 73.74Mbp, 78.05Mbp, 85.93Mbp, 90.70Mbp] 2025-01-31 10:00:24,237 DEBUG chr18 time: 120.84694591409061 s 2025-01-31 10:00:24,334 DEBUG chr18: Fitting background model for 16 segments 2025-01-31 10:00:40,595 DEBUG Results of fit_background_model emitted. 2025-01-31 10:00:40,729 INFO Signal to noise fit: SPOT=0.34±0.15 2025-01-31 10:00:40,736 INFO Final SPOT score: 0.34±0.15. Refitted 0 segments. 2025-01-31 10:00:40,796 INFO Estimating per-bp parameters of background model 2025-01-31 10:00:40,804 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:00:40,804 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 10:00:46,791 DEBUG chr3:3000000-8890251: Successfully fit background model for 5,098,160 bp. Use segment r for 0 bp 2025-01-31 10:00:46,923 DEBUG chr3:8890251-10191251: Successfully fit background model for 1,195,890 bp. Use segment r for 0 bp 2025-01-31 10:00:47,308 DEBUG chr2:3051000-7551751: Successfully fit background model for 4,235,429 bp. Use segment r for 0 bp 2025-01-31 10:00:47,661 DEBUG chr5:3002500-5919251: Successfully fit background model for 2,557,978 bp. Use segment r for 0 bp 2025-01-31 10:00:47,890 DEBUG chrX:3055000-7564751: Successfully fit background model for 2,017,092 bp. Use segment r for 1,620 bp 2025-01-31 10:00:47,935 DEBUG chr3:10191251-19147251: Successfully fit background model for 7,540,598 bp. Use segment r for 0 bp 2025-01-31 10:00:47,937 DEBUG chrX:7564751-7935251: Successfully fit background model for 361,864 bp. Use segment r for 0 bp 2025-01-31 10:00:48,029 DEBUG chr3:19147251-19987751: Successfully fit background model for 769,724 bp. Use segment r for 0 bp 2025-01-31 10:00:48,271 DEBUG chr1:3000500-9540001: Successfully fit background model for 5,696,417 bp. Use segment r for 0 bp 2025-01-31 10:00:48,319 DEBUG chr1:9540001-9882251: Successfully fit background model for 328,709 bp. Use segment r for 0 bp 2025-01-31 10:00:48,391 DEBUG chr4:3050000-16236751: Successfully fit background model for 11,574,127 bp. Use segment r for 1,767 bp 2025-01-31 10:00:48,479 DEBUG chr2:7551751-18016251: Successfully fit background model for 9,458,550 bp. Use segment r for 0 bp 2025-01-31 10:00:48,723 DEBUG chrX:7935251-14826751: Successfully fit background model for 6,046,865 bp. Use segment r for 0 bp 2025-01-31 10:00:49,021 DEBUG chr3:19987751-28696251: Successfully fit background model for 7,739,774 bp. Use segment r for 0 bp 2025-01-31 10:00:49,048 DEBUG chr3:28696251-28814751: Successfully fit background model for 115,339 bp. Use segment r for 0 bp 2025-01-31 10:00:49,116 DEBUG chr2:18016251-24916751: Successfully fit background model for 6,150,184 bp. Use segment r for 0 bp 2025-01-31 10:00:49,222 DEBUG chr3:28814751-30545251: Successfully fit background model for 1,563,465 bp. Use segment r for 0 bp 2025-01-31 10:00:49,279 DEBUG chr3:30545251-31094251: Successfully fit background model for 532,021 bp. Use segment r for 0 bp 2025-01-31 10:00:50,033 DEBUG chr3:31094251-38364251: Successfully fit background model for 6,690,047 bp. Use segment r for 0 bp 2025-01-31 10:00:50,172 DEBUG chr4:16236751-32596251: Successfully fit background model for 14,502,648 bp. Use segment r for 0 bp 2025-01-31 10:00:50,185 DEBUG chr5:5919251-20871251: Successfully fit background model for 11,917,624 bp. Use segment r for 1,647 bp 2025-01-31 10:00:50,290 DEBUG chr2:24916751-36289251: Successfully fit background model for 11,051,358 bp. Use segment r for 0 bp 2025-01-31 10:00:50,378 DEBUG chr2:36289251-37036751: Successfully fit background model for 613,220 bp. Use segment r for 0 bp 2025-01-31 10:00:50,397 DEBUG chr4:32596251-34881751: Successfully fit background model for 2,153,219 bp. Use segment r for 0 bp 2025-01-31 10:00:50,521 DEBUG chr5:20871251-24319751: Successfully fit background model for 3,176,855 bp. Use segment r for 0 bp 2025-01-31 10:00:50,590 DEBUG chr5:24319751-24912251: Successfully fit background model for 571,131 bp. Use segment r for 0 bp 2025-01-31 10:00:50,601 DEBUG chr2:37036751-39378751: Successfully fit background model for 2,192,641 bp. Use segment r for 0 bp 2025-01-31 10:00:50,710 DEBUG chrX:14826751-26915001: Successfully fit background model for 8,550,634 bp. Use segment r for 4,058 bp 2025-01-31 10:00:50,868 DEBUG chr4:34881751-40130251: Successfully fit background model for 4,660,895 bp. Use segment r for 0 bp 2025-01-31 10:00:50,936 DEBUG chr1:9882251-33449251: Successfully fit background model for 21,061,728 bp. Use segment r for 0 bp 2025-01-31 10:00:50,997 DEBUG chr2:39378751-43542751: Successfully fit background model for 3,766,501 bp. Use segment r for 0 bp 2025-01-31 10:00:51,037 DEBUG chr4:40130251-41857501: Successfully fit background model for 1,566,855 bp. Use segment r for 0 bp 2025-01-31 10:00:51,050 DEBUG chr3:38364251-49023751: Successfully fit background model for 9,481,711 bp. Use segment r for 0 bp 2025-01-31 10:00:51,077 DEBUG chr4:42706000-43060251: Successfully fit background model for 262,843 bp. Use segment r for 0 bp 2025-01-31 10:00:51,143 DEBUG chr5:24912251-30516251: Successfully fit background model for 5,022,948 bp. Use segment r for 0 bp 2025-01-31 10:00:51,224 DEBUG chr5:30516251-31242251: Successfully fit background model for 704,706 bp. Use segment r for 0 bp 2025-01-31 10:00:51,257 DEBUG chr3:49023751-51147751: Successfully fit background model for 1,875,136 bp. Use segment r for 0 bp 2025-01-31 10:00:51,315 DEBUG chr3:51147751-51636751: Successfully fit background model for 468,309 bp. Use segment r for 0 bp 2025-01-31 10:00:51,533 DEBUG chr1:33449251-39393251: Successfully fit background model for 5,671,460 bp. Use segment r for 0 bp 2025-01-31 10:00:51,627 DEBUG chr4:43060251-48693251: Successfully fit background model for 5,417,998 bp. Use segment r for 0 bp 2025-01-31 10:00:51,925 DEBUG chr5:31242251-38477751: Successfully fit background model for 6,887,686 bp. Use segment r for 0 bp 2025-01-31 10:00:51,932 DEBUG chrX:31132500-39283751: Successfully fit background model for 3,125,762 bp. Use segment r for 997 bp 2025-01-31 10:00:51,948 DEBUG chr1:39393251-44096751: Successfully fit background model for 4,501,307 bp. Use segment r for 0 bp 2025-01-31 10:00:51,966 DEBUG chr1:44096751-44149251: Successfully fit background model for 51,177 bp. Use segment r for 0 bp 2025-01-31 10:00:51,988 DEBUG chr4:48693251-52742751: Successfully fit background model for 3,568,870 bp. Use segment r for 0 bp 2025-01-31 10:00:52,805 DEBUG chr1:44149251-52097751: Successfully fit background model for 6,915,440 bp. Use segment r for 0 bp 2025-01-31 10:00:53,088 DEBUG chrX:39283751-50549251: Successfully fit background model for 9,745,074 bp. Use segment r for 0 bp 2025-01-31 10:00:53,117 DEBUG chrX:50549251-50637251: Successfully fit background model for 80,397 bp. Use segment r for 0 bp 2025-01-31 10:00:53,231 DEBUG chr5:38477751-50934751: Successfully fit background model for 11,323,355 bp. Use segment r for 0 bp 2025-01-31 10:00:53,515 DEBUG chr3:51636751-71570251: Successfully fit background model for 18,028,491 bp. Use segment r for 0 bp 2025-01-31 10:00:53,556 DEBUG chr5:50934751-54491751: Successfully fit background model for 3,398,633 bp. Use segment r for 0 bp 2025-01-31 10:00:53,892 DEBUG chr2:43542751-69796751: Successfully fit background model for 24,224,504 bp. Use segment r for 0 bp 2025-01-31 10:00:53,942 DEBUG chr1:52097751-62695751: Successfully fit background model for 9,837,272 bp. Use segment r for 0 bp 2025-01-31 10:00:53,980 DEBUG chr4:52742751-64727751: Successfully fit background model for 9,629,151 bp. Use segment r for 1,440 bp 2025-01-31 10:00:54,191 DEBUG chr1:62695751-65205251: Successfully fit background model for 2,360,042 bp. Use segment r for 0 bp 2025-01-31 10:00:54,265 DEBUG chr2:69796751-73569251: Successfully fit background model for 3,667,706 bp. Use segment r for 0 bp 2025-01-31 10:00:54,341 DEBUG chr3:71570251-79564251: Successfully fit background model for 7,147,305 bp. Use segment r for 0 bp 2025-01-31 10:00:54,363 DEBUG chr3:79564251-79629751: Successfully fit background model for 63,544 bp. Use segment r for 0 bp 2025-01-31 10:00:54,504 DEBUG chr5:54491751-63382251: Successfully fit background model for 7,857,927 bp. Use segment r for 0 bp 2025-01-31 10:00:54,844 DEBUG chr3:79629751-83977251: Successfully fit background model for 3,996,332 bp. Use segment r for 0 bp 2025-01-31 10:00:55,113 DEBUG chr1:65205251-72225251: Successfully fit background model for 6,473,395 bp. Use segment r for 0 bp 2025-01-31 10:00:55,123 DEBUG chr5:63382251-68448751: Successfully fit background model for 4,787,448 bp. Use segment r for 0 bp 2025-01-31 10:00:55,135 DEBUG chr1:72225251-72313751: Successfully fit background model for 85,640 bp. Use segment r for 0 bp 2025-01-31 10:00:55,202 DEBUG chr3:83977251-87727251: Successfully fit background model for 3,572,178 bp. Use segment r for 0 bp 2025-01-31 10:00:55,277 DEBUG chr2:73569251-80948751: Successfully fit background model for 6,992,327 bp. Use segment r for 0 bp 2025-01-31 10:00:55,343 DEBUG chr1:72313751-74235251: Successfully fit background model for 1,819,865 bp. Use segment r for 0 bp 2025-01-31 10:00:55,415 DEBUG chr5:68448751-71702751: Successfully fit background model for 2,862,767 bp. Use segment r for 0 bp 2025-01-31 10:00:55,448 DEBUG chr3:87727251-90374251: Successfully fit background model for 2,512,202 bp. Use segment r for 0 bp 2025-01-31 10:00:55,455 DEBUG chr1:74235251-75339751: Successfully fit background model for 1,008,790 bp. Use segment r for 0 bp 2025-01-31 10:00:55,470 DEBUG chr2:80948751-82944751: Successfully fit background model for 1,741,488 bp. Use segment r for 0 bp 2025-01-31 10:00:55,631 DEBUG chr2:82944751-84650251: Successfully fit background model for 1,400,585 bp. Use segment r for 0 bp 2025-01-31 10:00:55,703 DEBUG chr2:84650251-85314751: Successfully fit background model for 627,074 bp. Use segment r for 0 bp 2025-01-31 10:00:55,821 DEBUG chr3:90374251-94382001: Successfully fit background model for 3,096,182 bp. Use segment r for 0 bp 2025-01-31 10:00:55,927 DEBUG chr4:64727751-80741751: Successfully fit background model for 14,178,747 bp. Use segment r for 0 bp 2025-01-31 10:00:55,946 DEBUG chrX:50637251-72955751: Successfully fit background model for 18,222,326 bp. Use segment r for 0 bp 2025-01-31 10:00:56,040 DEBUG chr3:94382001-96727501: Successfully fit background model for 2,144,880 bp. Use segment r for 0 bp 2025-01-31 10:00:56,041 DEBUG chr5:71702751-77918251: Successfully fit background model for 5,882,816 bp. Use segment r for 0 bp 2025-01-31 10:00:56,173 DEBUG chr2:85314751-89885751: Successfully fit background model for 3,980,027 bp. Use segment r for 0 bp 2025-01-31 10:00:56,389 DEBUG chr3:96727501-100408501: Successfully fit background model for 3,250,091 bp. Use segment r for 0 bp 2025-01-31 10:00:56,409 DEBUG chrX:72955751-75765251: Successfully fit background model for 2,173,205 bp. Use segment r for 327 bp 2025-01-31 10:00:56,504 DEBUG chr4:80741751-86555751: Successfully fit background model for 5,362,283 bp. Use segment r for 0 bp 2025-01-31 10:00:56,583 DEBUG chrX:75765251-77424251: Successfully fit background model for 1,359,743 bp. Use segment r for 0 bp 2025-01-31 10:00:56,624 DEBUG chr1:75339751-84838251: Successfully fit background model for 8,765,888 bp. Use segment r for 0 bp 2025-01-31 10:00:56,699 DEBUG chr2:89885751-94923251: Successfully fit background model for 4,633,023 bp. Use segment r for 0 bp 2025-01-31 10:00:56,801 DEBUG chr1:84838251-86343251: Successfully fit background model for 964,288 bp. Use segment r for 0 bp 2025-01-31 10:00:56,815 DEBUG chr4:86555751-89600751: Successfully fit background model for 2,721,171 bp. Use segment r for 0 bp 2025-01-31 10:00:56,833 DEBUG chr1:86343251-86548251: Successfully fit background model for 200,014 bp. Use segment r for 0 bp 2025-01-31 10:00:57,121 DEBUG chr4:89600751-92910751: Successfully fit background model for 2,898,926 bp. Use segment r for 0 bp 2025-01-31 10:00:57,141 DEBUG chr5:77918251-88072251: Successfully fit background model for 9,060,047 bp. Use segment r for 0 bp 2025-01-31 10:00:57,264 DEBUG chr2:94923251-100905751: Successfully fit background model for 4,968,377 bp. Use segment r for 0 bp 2025-01-31 10:00:57,342 DEBUG chr3:100408501-108834251: Successfully fit background model for 7,992,701 bp. Use segment r for 0 bp 2025-01-31 10:00:57,599 DEBUG chr1:86548251-93599501: Successfully fit background model for 6,766,942 bp. Use segment r for 0 bp 2025-01-31 10:00:57,637 DEBUG chr1:93599501-93828251: Successfully fit background model for 223,608 bp. Use segment r for 0 bp 2025-01-31 10:00:57,928 DEBUG chr2:100905751-107967251: Successfully fit background model for 6,681,028 bp. Use segment r for 0 bp 2025-01-31 10:00:58,001 DEBUG chr4:92910751-101233251: Successfully fit background model for 7,651,198 bp. Use segment r for 0 bp 2025-01-31 10:00:58,056 DEBUG chr3:108834251-116317751: Successfully fit background model for 6,490,772 bp. Use segment r for 0 bp 2025-01-31 10:00:58,100 DEBUG chr3:116317751-116633751: Successfully fit background model for 307,081 bp. Use segment r for 0 bp 2025-01-31 10:00:58,185 DEBUG chrX:77424251-91311251: Successfully fit background model for 12,015,304 bp. Use segment r for 0 bp 2025-01-31 10:00:58,276 DEBUG chrX:91311251-91991251: Successfully fit background model for 381,323 bp. Use segment r for 0 bp 2025-01-31 10:00:58,290 DEBUG chrX:91991251-92042501: Successfully fit background model for 31,950 bp. Use segment r for 0 bp 2025-01-31 10:00:58,454 DEBUG chrX:92042501-93830751: Successfully fit background model for 1,554,934 bp. Use segment r for 0 bp 2025-01-31 10:00:58,504 DEBUG chr4:101233251-106690251: Successfully fit background model for 5,141,078 bp. Use segment r for 0 bp 2025-01-31 10:00:58,538 DEBUG chr3:116633751-121147751: Successfully fit background model for 4,172,361 bp. Use segment r for 0 bp 2025-01-31 10:00:58,571 DEBUG chrX:93830751-94855751: Successfully fit background model for 869,275 bp. Use segment r for 0 bp 2025-01-31 10:00:58,710 DEBUG chr3:121147751-122920251: Successfully fit background model for 1,727,233 bp. Use segment r for 0 bp 2025-01-31 10:00:58,832 DEBUG chr4:106690251-110289751: Successfully fit background model for 3,420,948 bp. Use segment r for 0 bp 2025-01-31 10:00:58,987 DEBUG chr1:93828251-105957251: Successfully fit background model for 10,584,790 bp. Use segment r for 0 bp 2025-01-31 10:00:58,988 DEBUG chr4:110289751-111908251: Successfully fit background model for 1,429,973 bp. Use segment r for 0 bp 2025-01-31 10:00:59,014 DEBUG chrX:94855751-99313751: Successfully fit background model for 3,770,384 bp. Use segment r for 0 bp 2025-01-31 10:00:59,056 DEBUG chr2:107967251-118597751: Successfully fit background model for 9,715,224 bp. Use segment r for 0 bp 2025-01-31 10:00:59,092 DEBUG chr3:122920251-127181251: Successfully fit background model for 3,929,932 bp. Use segment r for 0 bp 2025-01-31 10:00:59,165 DEBUG chr4:111908251-113854001: Successfully fit background model for 1,692,909 bp. Use segment r for 0 bp 2025-01-31 10:00:59,211 DEBUG chr1:105957251-108057251: Successfully fit background model for 1,909,189 bp. Use segment r for 0 bp 2025-01-31 10:00:59,277 DEBUG chr4:113854001-115034751: Successfully fit background model for 1,084,788 bp. Use segment r for 0 bp 2025-01-31 10:00:59,403 DEBUG chrX:99313751-103477751: Successfully fit background model for 3,751,309 bp. Use segment r for 0 bp 2025-01-31 10:00:59,409 DEBUG chr2:118597751-122392501: Successfully fit background model for 3,652,982 bp. Use segment r for 0 bp 2025-01-31 10:00:59,426 DEBUG chrX:103477751-103624751: Successfully fit background model for 142,742 bp. Use segment r for 0 bp 2025-01-31 10:00:59,431 DEBUG chr3:127181251-130682251: Successfully fit background model for 3,313,780 bp. Use segment r for 0 bp 2025-01-31 10:00:59,549 DEBUG chr2:122392501-123803751: Successfully fit background model for 1,253,107 bp. Use segment r for 0 bp 2025-01-31 10:00:59,719 DEBUG chr5:88072251-103650251: Successfully fit background model for 12,428,549 bp. Use segment r for 2,736 bp 2025-01-31 10:00:59,786 DEBUG chr5:103650251-104074751: Successfully fit background model for 407,217 bp. Use segment r for 0 bp 2025-01-31 10:00:59,864 DEBUG chr3:130682251-135243751: Successfully fit background model for 4,094,131 bp. Use segment r for 0 bp 2025-01-31 10:00:59,875 DEBUG chr2:123803751-127126251: Successfully fit background model for 3,124,030 bp. Use segment r for 0 bp 2025-01-31 10:00:59,929 DEBUG chr3:135243751-135805751: Successfully fit background model for 539,657 bp. Use segment r for 0 bp 2025-01-31 10:00:59,953 DEBUG chr5:104074751-105490751: Successfully fit background model for 1,141,835 bp. Use segment r for 0 bp 2025-01-31 10:01:00,248 DEBUG chr3:135805751-139114251: Successfully fit background model for 3,107,941 bp. Use segment r for 0 bp 2025-01-31 10:01:00,287 DEBUG chr2:127126251-131139251: Successfully fit background model for 3,860,398 bp. Use segment r for 0 bp 2025-01-31 10:01:00,315 DEBUG chr5:105490751-109056001: Successfully fit background model for 3,383,345 bp. Use segment r for 0 bp 2025-01-31 10:01:00,415 DEBUG chr1:108057251-118309751: Successfully fit background model for 8,924,372 bp. Use segment r for 0 bp 2025-01-31 10:01:00,424 DEBUG chr5:109056001-110094501: Successfully fit background model for 835,450 bp. Use segment r for 0 bp 2025-01-31 10:01:00,500 DEBUG chr3:139114251-141841251: Successfully fit background model for 2,475,446 bp. Use segment r for 0 bp 2025-01-31 10:01:00,600 DEBUG chr1:118309751-120024251: Successfully fit background model for 1,665,994 bp. Use segment r for 0 bp 2025-01-31 10:01:00,656 DEBUG chrX:103624751-114149751: Successfully fit background model for 8,933,095 bp. Use segment r for 0 bp 2025-01-31 10:01:00,794 DEBUG chr5:110094501-113722251: Successfully fit background model for 3,531,921 bp. Use segment r for 0 bp 2025-01-31 10:01:00,998 DEBUG chr5:113722251-115661251: Successfully fit background model for 1,887,276 bp. Use segment r for 0 bp 2025-01-31 10:01:01,010 DEBUG chr3:141841251-147143251: Successfully fit background model for 5,037,786 bp. Use segment r for 0 bp 2025-01-31 10:01:01,036 DEBUG chr2:131139251-138529251: Successfully fit background model for 6,928,819 bp. Use segment r for 0 bp 2025-01-31 10:01:01,153 DEBUG chr4:115034751-131710251: Successfully fit background model for 15,012,638 bp. Use segment r for 0 bp 2025-01-31 10:01:01,412 DEBUG chr3:147143251-151565251: Successfully fit background model for 4,190,918 bp. Use segment r for 0 bp 2025-01-31 10:01:01,416 DEBUG chr5:115661251-120083751: Successfully fit background model for 4,329,628 bp. Use segment r for 0 bp 2025-01-31 10:01:01,519 DEBUG chr2:138529251-143870251: Successfully fit background model for 4,938,905 bp. Use segment r for 0 bp 2025-01-31 10:01:01,603 DEBUG chr4:131710251-136283251: Successfully fit background model for 4,452,333 bp. Use segment r for 0 bp 2025-01-31 10:01:01,864 DEBUG chr1:120024251-130715251: Successfully fit background model for 9,938,720 bp. Use segment r for 0 bp 2025-01-31 10:01:01,980 DEBUG chr5:120083751-125451251: Successfully fit background model for 5,141,973 bp. Use segment r for 0 bp 2025-01-31 10:01:01,987 DEBUG chr2:143870251-148902501: Successfully fit background model for 4,769,247 bp. Use segment r for 0 bp 2025-01-31 10:01:02,004 DEBUG chr4:136283251-140679251: Successfully fit background model for 4,309,419 bp. Use segment r for 0 bp 2025-01-31 10:01:02,040 DEBUG chr3:151565251-158203251: Successfully fit background model for 6,200,544 bp. Use segment r for 0 bp 2025-01-31 10:01:02,120 DEBUG chr4:140679251-141746751: Successfully fit background model for 1,039,855 bp. Use segment r for 0 bp 2025-01-31 10:01:02,176 DEBUG chr2:148902501-150903751: Successfully fit background model for 1,735,156 bp. Use segment r for 0 bp 2025-01-31 10:01:02,222 DEBUG chr3:158203251-160039680: Successfully fit background model for 1,471,000 bp. Use segment r for 0 bp 2025-01-31 10:01:02,373 DEBUG chr5:125451251-129723751: Successfully fit background model for 4,085,544 bp. Use segment r for 0 bp 2025-01-31 10:01:02,428 DEBUG chr5:129723751-130035251: Successfully fit background model for 253,111 bp. Use segment r for 0 bp 2025-01-31 10:01:02,438 DEBUG chr1:130715251-136364751: Successfully fit background model for 5,495,312 bp. Use segment r for 0 bp 2025-01-31 10:01:02,466 DEBUG chrX:114149751-124229501: Successfully fit background model for 7,832,401 bp. Use segment r for 11,479 bp 2025-01-31 10:01:02,735 DEBUG chr4:141746751-147847751: Successfully fit background model for 3,872,389 bp. Use segment r for 0 bp 2025-01-31 10:01:02,744 DEBUG chr1:136364751-139520501: Successfully fit background model for 2,962,572 bp. Use segment r for 0 bp 2025-01-31 10:01:02,848 DEBUG chr5:130035251-134142751: Successfully fit background model for 3,941,344 bp. Use segment r for 0 bp 2025-01-31 10:01:03,007 DEBUG chr2:150903751-158582251: Successfully fit background model for 7,108,304 bp. Use segment r for 0 bp 2025-01-31 10:01:03,163 DEBUG chr1:139520501-143689751: Successfully fit background model for 3,541,794 bp. Use segment r for 0 bp 2025-01-31 10:01:03,245 DEBUG chr1:143689751-144419751: Successfully fit background model for 634,726 bp. Use segment r for 0 bp 2025-01-31 10:01:03,266 DEBUG chr5:134142751-138264001: Successfully fit background model for 3,864,915 bp. Use segment r for 0 bp 2025-01-31 10:01:03,268 DEBUG chrX:126011000-134017251: Successfully fit background model for 6,900,140 bp. Use segment r for 0 bp 2025-01-31 10:01:03,487 DEBUG chr2:158582251-163295751: Successfully fit background model for 4,505,547 bp. Use segment r for 0 bp 2025-01-31 10:01:03,542 DEBUG chr4:147847751-155558751: Successfully fit background model for 7,552,754 bp. Use segment r for 0 bp 2025-01-31 10:01:03,652 DEBUG chr4:155558751-156508116: Successfully fit background model for 688,856 bp. Use segment r for 0 bp 2025-01-31 10:01:03,691 DEBUG chr1:144419751-149245251: Successfully fit background model for 4,248,026 bp. Use segment r for 0 bp 2025-01-31 10:01:03,850 DEBUG chr2:163295751-166986751: Successfully fit background model for 3,556,640 bp. Use segment r for 0 bp 2025-01-31 10:01:03,967 DEBUG chr2:166986751-168078251: Successfully fit background model for 1,052,588 bp. Use segment r for 0 bp 2025-01-31 10:01:04,189 DEBUG chrX:134017251-142695251: Successfully fit background model for 7,522,951 bp. Use segment r for 0 bp 2025-01-31 10:01:04,310 DEBUG chr1:149245251-155003251: Successfully fit background model for 5,395,583 bp. Use segment r for 0 bp 2025-01-31 10:01:04,719 DEBUG chr2:168078251-175179001: Successfully fit background model for 6,758,329 bp. Use segment r for 0 bp 2025-01-31 10:01:04,901 DEBUG chr1:155003251-161164251: Successfully fit background model for 5,845,930 bp. Use segment r for 0 bp 2025-01-31 10:01:05,024 DEBUG chr2:176700000-179792751: Successfully fit background model for 1,903,249 bp. Use segment r for 0 bp 2025-01-31 10:01:05,050 DEBUG chr5:138264001-151834684: Successfully fit background model for 12,599,571 bp. Use segment r for 0 bp 2025-01-31 10:01:05,256 DEBUG chr2:179792751-182113224: Successfully fit background model for 2,129,640 bp. Use segment r for 0 bp 2025-01-31 10:01:05,278 DEBUG chr1:161164251-165077251: Successfully fit background model for 3,657,062 bp. Use segment r for 0 bp 2025-01-31 10:01:05,308 DEBUG chrX:142695251-150429251: Successfully fit background model for 4,857,372 bp. Use segment r for 5,129 bp 2025-01-31 10:01:05,386 DEBUG chr1:165077251-166007751: Successfully fit background model for 874,592 bp. Use segment r for 0 bp 2025-01-31 10:01:05,464 DEBUG chrX:150429251-151800751: Successfully fit background model for 1,195,839 bp. Use segment r for 0 bp 2025-01-31 10:01:05,540 DEBUG chr1:166007751-167219251: Successfully fit background model for 1,069,783 bp. Use segment r for 0 bp 2025-01-31 10:01:05,564 DEBUG chr1:167219251-167394751: Successfully fit background model for 172,572 bp. Use segment r for 0 bp 2025-01-31 10:01:05,946 DEBUG chr1:167394751-170832001: Successfully fit background model for 3,240,545 bp. Use segment r for 0 bp 2025-01-31 10:01:06,101 DEBUG chr1:170832001-172294751: Successfully fit background model for 1,358,178 bp. Use segment r for 0 bp 2025-01-31 10:01:06,253 DEBUG chrX:151800751-159253751: Successfully fit background model for 6,410,262 bp. Use segment r for 0 bp 2025-01-31 10:01:06,858 DEBUG chr1:172294751-178303251: Successfully fit background model for 5,422,684 bp. Use segment r for 0 bp 2025-01-31 10:01:06,884 DEBUG chr1:178303251-178396251: Successfully fit background model for 90,597 bp. Use segment r for 0 bp 2025-01-31 10:01:07,622 DEBUG chr1:178396251-185425751: Successfully fit background model for 6,646,199 bp. Use segment r for 0 bp 2025-01-31 10:01:07,627 DEBUG chrX:159253751-169971501: Successfully fit background model for 9,810,359 bp. Use segment r for 0 bp 2025-01-31 10:01:07,648 DEBUG chr1:185425751-185517751: Successfully fit background model for 91,172 bp. Use segment r for 0 bp 2025-01-31 10:01:07,753 DEBUG chrX:169971501-171031299: Successfully fit background model for 5,730 bp. Use segment r for 0 bp 2025-01-31 10:01:08,225 DEBUG chr1:185517751-190832751: Successfully fit background model for 5,115,978 bp. Use segment r for 0 bp 2025-01-31 10:01:08,350 DEBUG chr1:190832751-191943751: Successfully fit background model for 1,069,125 bp. Use segment r for 0 bp 2025-01-31 10:01:08,750 DEBUG chr1:191943751-195471971: Successfully fit background model for 3,175,974 bp. Use segment r for 0 bp 2025-01-31 10:02:49,406 DEBUG chr6:3050000-9405251: Successfully fit background model for 5,655,090 bp. Use segment r for 0 bp 2025-01-31 10:02:51,646 DEBUG chr6:9405251-28185751: Successfully fit background model for 16,615,151 bp. Use segment r for 0 bp 2025-01-31 10:02:52,325 DEBUG chr6:28185751-35131751: Successfully fit background model for 6,645,760 bp. Use segment r for 0 bp 2025-01-31 10:02:52,629 DEBUG chr6:35131751-38293751: Successfully fit background model for 2,922,099 bp. Use segment r for 0 bp 2025-01-31 10:02:52,714 DEBUG chr7:3004000-4444251: Successfully fit background model for 1,031,587 bp. Use segment r for 2,988 bp 2025-01-31 10:02:52,746 DEBUG chr6:38293751-39404751: Successfully fit background model for 1,090,379 bp. Use segment r for 0 bp 2025-01-31 10:02:52,784 DEBUG chr7:4444251-5116751: Successfully fit background model for 629,869 bp. Use segment r for 0 bp 2025-01-31 10:02:52,850 DEBUG chr7:5116751-5738501: Successfully fit background model for 451,019 bp. Use segment r for 0 bp 2025-01-31 10:02:53,003 DEBUG chr7:5738501-7300751: Successfully fit background model for 1,317,253 bp. Use segment r for 0 bp 2025-01-31 10:02:53,207 DEBUG chr6:39404751-44094251: Successfully fit background model for 4,198,490 bp. Use segment r for 0 bp 2025-01-31 10:02:53,544 DEBUG chr6:44094251-47587251: Successfully fit background model for 3,149,081 bp. Use segment r for 0 bp 2025-01-31 10:02:53,584 DEBUG chr6:47587251-47887751: Successfully fit background model for 163,369 bp. Use segment r for 0 bp 2025-01-31 10:02:53,831 DEBUG chr7:7300751-12897251: Successfully fit background model for 2,161,445 bp. Use segment r for 6,562 bp 2025-01-31 10:02:53,859 DEBUG chr7:12897251-13063751: Successfully fit background model for 159,048 bp. Use segment r for 0 bp 2025-01-31 10:02:54,076 DEBUG chr10:3101500-14818251: Successfully fit background model for 10,664,026 bp. Use segment r for 0 bp 2025-01-31 10:02:54,245 DEBUG chr10:14818251-16461251: Successfully fit background model for 1,417,465 bp. Use segment r for 0 bp 2025-01-31 10:02:54,263 DEBUG chr7:13063751-15897251: Successfully fit background model for 1,748,075 bp. Use segment r for 492 bp 2025-01-31 10:02:54,384 DEBUG chr7:15897251-17112251: Successfully fit background model for 1,176,656 bp. Use segment r for 0 bp 2025-01-31 10:02:54,649 DEBUG chr7:17112251-19000751: Successfully fit background model for 1,346,514 bp. Use segment r for 9,782 bp 2025-01-31 10:02:54,720 DEBUG chr7:19000751-19716001: Successfully fit background model for 701,619 bp. Use segment r for 0 bp 2025-01-31 10:02:54,782 DEBUG chr7:19716001-20102001: Successfully fit background model for 324,216 bp. Use segment r for 1,792 bp 2025-01-31 10:02:54,932 DEBUG chr6:47887751-59508501: Successfully fit background model for 10,847,409 bp. Use segment r for 0 bp 2025-01-31 10:02:55,013 DEBUG chr7:22765000-24294751: Successfully fit background model for 840,385 bp. Use segment r for 4,768 bp 2025-01-31 10:02:55,166 DEBUG chr7:24294751-25928251: Successfully fit background model for 1,535,145 bp. Use segment r for 0 bp 2025-01-31 10:02:55,290 DEBUG chr7:25928251-27165251: Successfully fit background model for 969,063 bp. Use segment r for 0 bp 2025-01-31 10:02:55,655 DEBUG chr7:27165251-30974751: Successfully fit background model for 3,580,724 bp. Use segment r for 0 bp 2025-01-31 10:02:56,006 DEBUG chr10:16461251-31974751: Successfully fit background model for 14,182,713 bp. Use segment r for 0 bp 2025-01-31 10:02:56,058 DEBUG chr7:30974751-33677251: Successfully fit background model for 1,130,766 bp. Use segment r for 3,604 bp 2025-01-31 10:02:56,243 DEBUG chr6:59508501-70709501: Successfully fit background model for 9,636,452 bp. Use segment r for 0 bp 2025-01-31 10:02:56,490 DEBUG chr7:33677251-38085001: Successfully fit background model for 4,228,345 bp. Use segment r for 0 bp 2025-01-31 10:02:56,519 DEBUG chr7:38085001-38272251: Successfully fit background model for 184,059 bp. Use segment r for 0 bp 2025-01-31 10:02:56,608 DEBUG chr6:70709501-74432251: Successfully fit background model for 3,497,717 bp. Use segment r for 0 bp 2025-01-31 10:02:56,776 DEBUG chr10:31974751-40102251: Successfully fit background model for 7,371,692 bp. Use segment r for 0 bp 2025-01-31 10:02:57,077 DEBUG chr7:38272251-43811751: Successfully fit background model for 4,011,405 bp. Use segment r for 0 bp 2025-01-31 10:02:57,094 DEBUG chr6:74432251-79520001: Successfully fit background model for 4,583,851 bp. Use segment r for 0 bp 2025-01-31 10:02:57,095 DEBUG chr10:40102251-43509251: Successfully fit background model for 3,270,892 bp. Use segment r for 0 bp 2025-01-31 10:02:57,182 DEBUG chr7:43811751-44814751: Successfully fit background model for 943,927 bp. Use segment r for 0 bp 2025-01-31 10:02:57,271 DEBUG chr7:44814751-45682751: Successfully fit background model for 851,915 bp. Use segment r for 0 bp 2025-01-31 10:02:57,413 DEBUG chr7:45682751-47156251: Successfully fit background model for 1,443,734 bp. Use segment r for 0 bp 2025-01-31 10:02:57,414 DEBUG chr6:79520001-82997001: Successfully fit background model for 3,162,679 bp. Use segment r for 0 bp 2025-01-31 10:02:57,425 DEBUG chr10:43509251-46977001: Successfully fit background model for 3,212,625 bp. Use segment r for 0 bp 2025-01-31 10:02:57,469 DEBUG chr6:82997001-83436751: Successfully fit background model for 431,781 bp. Use segment r for 0 bp 2025-01-31 10:02:57,530 DEBUG chr7:47156251-48322751: Successfully fit background model for 932,373 bp. Use segment r for 0 bp 2025-01-31 10:02:57,667 DEBUG chr10:46977001-49536251: Successfully fit background model for 2,234,531 bp. Use segment r for 0 bp 2025-01-31 10:02:57,671 DEBUG chr6:83436751-85330251: Successfully fit background model for 1,815,115 bp. Use segment r for 0 bp 2025-01-31 10:02:57,689 DEBUG chr7:48322751-49983751: Successfully fit background model for 1,557,153 bp. Use segment r for 0 bp 2025-01-31 10:02:57,898 DEBUG chr7:49983751-52022251: Successfully fit background model for 1,778,010 bp. Use segment r for 0 bp 2025-01-31 10:02:58,227 DEBUG chr7:52022251-55514251: Successfully fit background model for 3,076,770 bp. Use segment r for 0 bp 2025-01-31 10:02:58,330 DEBUG chr7:55514251-56400251: Successfully fit background model for 776,632 bp. Use segment r for 0 bp 2025-01-31 10:02:58,352 DEBUG chr6:85330251-91985251: Successfully fit background model for 6,253,466 bp. Use segment r for 0 bp 2025-01-31 10:02:58,675 DEBUG chr10:49536251-58224001: Successfully fit background model for 7,426,076 bp. Use segment r for 0 bp 2025-01-31 10:02:59,071 DEBUG chr7:56400251-63885251: Successfully fit background model for 6,216,796 bp. Use segment r for 0 bp 2025-01-31 10:02:59,248 DEBUG chr10:58224001-64139251: Successfully fit background model for 5,656,019 bp. Use segment r for 0 bp 2025-01-31 10:02:59,456 DEBUG chr10:64139251-65633751: Successfully fit background model for 1,309,949 bp. Use segment r for 71,822 bp 2025-01-31 10:02:59,523 DEBUG chr7:63885251-68985251: Successfully fit background model for 4,847,003 bp. Use segment r for 0 bp 2025-01-31 10:02:59,601 DEBUG chr6:91985251-103434251: Successfully fit background model for 10,814,555 bp. Use segment r for 0 bp 2025-01-31 10:02:59,956 DEBUG chr7:68985251-73504751: Successfully fit background model for 4,216,242 bp. Use segment r for 0 bp 2025-01-31 10:03:00,245 DEBUG chr7:73504751-76530251: Successfully fit background model for 2,778,315 bp. Use segment r for 0 bp 2025-01-31 10:03:00,414 DEBUG chr10:65633751-75549251: Successfully fit background model for 9,183,942 bp. Use segment r for 0 bp 2025-01-31 10:03:00,500 DEBUG chr7:76530251-79239751: Successfully fit background model for 2,546,928 bp. Use segment r for 0 bp 2025-01-31 10:03:00,573 DEBUG chr6:103434251-112942251: Successfully fit background model for 8,624,639 bp. Use segment r for 0 bp 2025-01-31 10:03:00,653 DEBUG chr6:112942251-113597751: Successfully fit background model for 642,482 bp. Use segment r for 0 bp 2025-01-31 10:03:00,677 DEBUG chr7:79239751-80985751: Successfully fit background model for 1,701,312 bp. Use segment r for 0 bp 2025-01-31 10:03:00,795 DEBUG chr10:75549251-79637751: Successfully fit background model for 3,795,272 bp. Use segment r for 0 bp 2025-01-31 10:03:00,998 DEBUG chr10:79637751-81649751: Successfully fit background model for 1,977,377 bp. Use segment r for 0 bp 2025-01-31 10:03:01,070 DEBUG chr7:80985751-84893751: Successfully fit background model for 3,679,024 bp. Use segment r for 0 bp 2025-01-31 10:03:01,379 DEBUG chr8:3070000-4680251: Successfully fit background model for 1,414,288 bp. Use segment r for 0 bp 2025-01-31 10:03:01,409 DEBUG chr7:84893751-88483251: Successfully fit background model for 3,186,935 bp. Use segment r for 0 bp 2025-01-31 10:03:01,630 DEBUG chr7:88483251-90704501: Successfully fit background model for 2,020,947 bp. Use segment r for 0 bp 2025-01-31 10:03:01,662 DEBUG chr8:4680251-7506251: Successfully fit background model for 2,484,854 bp. Use segment r for 0 bp 2025-01-31 10:03:01,761 DEBUG chr6:113597751-122835251: Successfully fit background model for 8,563,817 bp. Use segment r for 0 bp 2025-01-31 10:03:01,865 DEBUG chr7:90704501-93216001: Successfully fit background model for 2,316,945 bp. Use segment r for 0 bp 2025-01-31 10:03:01,877 DEBUG chr8:7506251-9690751: Successfully fit background model for 2,050,442 bp. Use segment r for 0 bp 2025-01-31 10:03:02,045 DEBUG chr6:122835251-124641751: Successfully fit background model for 1,315,738 bp. Use segment r for 32 bp 2025-01-31 10:03:02,074 DEBUG chr8:9690751-11496251: Successfully fit background model for 1,756,154 bp. Use segment r for 0 bp 2025-01-31 10:03:02,083 DEBUG chr7:93216001-95549751: Successfully fit background model for 2,080,867 bp. Use segment r for 0 bp 2025-01-31 10:03:02,089 DEBUG chr8:11496251-11583251: Successfully fit background model for 84,501 bp. Use segment r for 0 bp 2025-01-31 10:03:02,100 DEBUG chr6:124641751-125067751: Successfully fit background model for 406,213 bp. Use segment r for 0 bp 2025-01-31 10:03:02,383 DEBUG chr7:95549751-98655251: Successfully fit background model for 2,952,881 bp. Use segment r for 0 bp 2025-01-31 10:03:02,501 DEBUG chr6:125067751-128844751: Successfully fit background model for 3,629,098 bp. Use segment r for 0 bp 2025-01-31 10:03:02,820 DEBUG chr7:98655251-103107751: Successfully fit background model for 4,292,487 bp. Use segment r for 0 bp 2025-01-31 10:03:03,021 DEBUG chr6:128844751-133382251: Successfully fit background model for 3,732,145 bp. Use segment r for 0 bp 2025-01-31 10:03:03,167 DEBUG chr6:133382251-134790251: Successfully fit background model for 1,251,776 bp. Use segment r for 0 bp 2025-01-31 10:03:03,264 DEBUG chr10:81649751-100790251: Successfully fit background model for 17,585,771 bp. Use segment r for 0 bp 2025-01-31 10:03:03,307 DEBUG chr7:103107751-108140251: Successfully fit background model for 3,936,652 bp. Use segment r for 0 bp 2025-01-31 10:03:03,364 DEBUG chr6:134790251-136863251: Successfully fit background model for 2,007,159 bp. Use segment r for 0 bp 2025-01-31 10:03:03,828 DEBUG chr10:100790251-106650751: Successfully fit background model for 5,251,006 bp. Use segment r for 0 bp 2025-01-31 10:03:04,458 DEBUG chr6:136863251-146575251: Successfully fit background model for 9,083,326 bp. Use segment r for 0 bp 2025-01-31 10:03:04,482 DEBUG chr10:106650751-113349251: Successfully fit background model for 6,246,295 bp. Use segment r for 0 bp 2025-01-31 10:03:04,584 DEBUG chr8:11583251-25596751: Successfully fit background model for 11,580,246 bp. Use segment r for 21,531 bp 2025-01-31 10:03:04,786 DEBUG chr6:146575251-149736546: Successfully fit background model for 2,813,252 bp. Use segment r for 0 bp 2025-01-31 10:03:04,818 DEBUG chr8:25596751-27934251: Successfully fit background model for 2,190,449 bp. Use segment r for 0 bp 2025-01-31 10:03:05,245 DEBUG chr7:108140251-125389251: Successfully fit background model for 16,386,367 bp. Use segment r for 0 bp 2025-01-31 10:03:05,363 DEBUG chr7:125389251-126339251: Successfully fit background model for 923,933 bp. Use segment r for 0 bp 2025-01-31 10:03:05,368 DEBUG chr8:27934251-33594751: Successfully fit background model for 5,120,610 bp. Use segment r for 0 bp 2025-01-31 10:03:05,501 DEBUG chr7:126339251-127765751: Successfully fit background model for 1,380,137 bp. Use segment r for 0 bp 2025-01-31 10:03:05,706 DEBUG chr8:33594751-37203251: Successfully fit background model for 3,434,100 bp. Use segment r for 0 bp 2025-01-31 10:03:06,009 DEBUG chr10:113349251-126895751: Successfully fit background model for 12,686,391 bp. Use segment r for 0 bp 2025-01-31 10:03:06,272 DEBUG chr10:126895751-129352251: Successfully fit background model for 2,310,970 bp. Use segment r for 0 bp 2025-01-31 10:03:06,408 DEBUG chr8:37203251-43815751: Successfully fit background model for 5,840,481 bp. Use segment r for 0 bp 2025-01-31 10:03:06,416 DEBUG chr10:129352251-130694993: Successfully fit background model for 1,042,805 bp. Use segment r for 0 bp 2025-01-31 10:03:06,993 DEBUG chr7:127765751-140801751: Successfully fit background model for 12,444,180 bp. Use segment r for 0 bp 2025-01-31 10:03:07,007 DEBUG chr8:43815751-49562001: Successfully fit background model for 5,429,184 bp. Use segment r for 0 bp 2025-01-31 10:03:07,090 DEBUG chr7:140801751-141515751: Successfully fit background model for 697,707 bp. Use segment r for 0 bp 2025-01-31 10:03:07,480 DEBUG chr7:141515751-145441459: Successfully fit background model for 3,654,751 bp. Use segment r for 0 bp 2025-01-31 10:03:07,634 DEBUG chr8:49562001-56102751: Successfully fit background model for 5,625,949 bp. Use segment r for 0 bp 2025-01-31 10:03:07,701 DEBUG chr14:3006500-5126501: Successfully fit background model for 73,869 bp. Use segment r for 902 bp 2025-01-31 10:03:07,825 DEBUG chr8:56102751-58016251: Successfully fit background model for 1,704,379 bp. Use segment r for 0 bp 2025-01-31 10:03:08,126 DEBUG chr8:58016251-60858251: Successfully fit background model for 2,461,616 bp. Use segment r for 0 bp 2025-01-31 10:03:08,149 DEBUG chr8:60858251-61006251: Successfully fit background model for 138,949 bp. Use segment r for 0 bp 2025-01-31 10:03:09,153 DEBUG chr14:5838000-18234251: Successfully fit background model for 9,821,071 bp. Use segment r for 0 bp 2025-01-31 10:03:09,186 DEBUG chr14:18234251-18285251: Successfully fit background model for 45,965 bp. Use segment r for 0 bp 2025-01-31 10:03:09,343 DEBUG chr14:18285251-19700251: Successfully fit background model for 1,081,221 bp. Use segment r for 0 bp 2025-01-31 10:03:09,556 DEBUG chr14:19700251-21854751: Successfully fit background model for 2,084,824 bp. Use segment r for 0 bp 2025-01-31 10:03:09,737 DEBUG chr8:61006251-69747751: Successfully fit background model for 7,796,598 bp. Use segment r for 6,523 bp 2025-01-31 10:03:09,824 DEBUG chr8:69747751-70520751: Successfully fit background model for 756,546 bp. Use segment r for 0 bp 2025-01-31 10:03:09,870 DEBUG chr8:70520751-70912251: Successfully fit background model for 384,255 bp. Use segment r for 0 bp 2025-01-31 10:03:10,035 DEBUG chr8:70912251-72478251: Successfully fit background model for 1,318,463 bp. Use segment r for 0 bp 2025-01-31 10:03:10,401 DEBUG chr14:21854751-29893751: Successfully fit background model for 7,262,923 bp. Use segment r for 0 bp 2025-01-31 10:03:10,611 DEBUG chr14:29893751-31995501: Successfully fit background model for 2,045,085 bp. Use segment r for 0 bp 2025-01-31 10:03:11,099 DEBUG chr14:31995501-37226751: Successfully fit background model for 4,925,783 bp. Use segment r for 0 bp 2025-01-31 10:03:11,414 DEBUG chr14:37226751-40550501: Successfully fit background model for 2,978,911 bp. Use segment r for 0 bp 2025-01-31 10:03:12,051 DEBUG chr8:72478251-83565251: Successfully fit background model for 10,064,417 bp. Use segment r for 248 bp 2025-01-31 10:03:12,170 DEBUG chr8:83565251-84635751: Successfully fit background model for 1,050,275 bp. Use segment r for 0 bp 2025-01-31 10:03:12,218 DEBUG chr8:84635751-85104501: Successfully fit background model for 460,299 bp. Use segment r for 0 bp 2025-01-31 10:03:12,963 DEBUG chr14:40550501-49354251: Successfully fit background model for 5,705,016 bp. Use segment r for 629 bp 2025-01-31 10:03:13,109 DEBUG chr14:49354251-50784751: Successfully fit background model for 1,216,252 bp. Use segment r for 0 bp 2025-01-31 10:03:13,149 DEBUG chr14:50784751-51163751: Successfully fit background model for 355,691 bp. Use segment r for 0 bp 2025-01-31 10:03:13,247 DEBUG chr14:51163751-51983251: Successfully fit background model for 641,257 bp. Use segment r for 0 bp 2025-01-31 10:03:13,267 DEBUG chr8:85104501-94117751: Successfully fit background model for 8,608,631 bp. Use segment r for 0 bp 2025-01-31 10:03:13,295 DEBUG chr14:51983251-52437251: Successfully fit background model for 431,721 bp. Use segment r for 0 bp 2025-01-31 10:03:13,496 DEBUG chr14:52437251-54360251: Successfully fit background model for 1,127,905 bp. Use segment r for 0 bp 2025-01-31 10:03:13,504 DEBUG chr8:94117751-96547251: Successfully fit background model for 2,297,567 bp. Use segment r for 0 bp 2025-01-31 10:03:13,637 DEBUG chr14:54360251-55603251: Successfully fit background model for 1,189,488 bp. Use segment r for 0 bp 2025-01-31 10:03:14,192 DEBUG chr8:96547251-102484001: Successfully fit background model for 5,411,728 bp. Use segment r for 0 bp 2025-01-31 10:03:14,389 DEBUG chr8:102484001-104533751: Successfully fit background model for 1,954,826 bp. Use segment r for 0 bp 2025-01-31 10:03:14,650 DEBUG chr8:104533751-107385751: Successfully fit background model for 2,671,982 bp. Use segment r for 0 bp 2025-01-31 10:03:14,952 DEBUG chr8:107385751-110723751: Successfully fit background model for 3,244,105 bp. Use segment r for 0 bp 2025-01-31 10:03:15,068 DEBUG chr8:110723751-111848751: Successfully fit background model for 1,094,387 bp. Use segment r for 0 bp 2025-01-31 10:03:15,470 DEBUG chr14:55603251-71418251: Successfully fit background model for 14,612,175 bp. Use segment r for 0 bp 2025-01-31 10:03:15,759 DEBUG chr8:111848751-116868751: Successfully fit background model for 4,549,978 bp. Use segment r for 285,852 bp 2025-01-31 10:03:15,764 DEBUG chr14:71418251-74310251: Successfully fit background model for 2,646,865 bp. Use segment r for 0 bp 2025-01-31 10:03:15,995 DEBUG chr8:116868751-119339751: Successfully fit background model for 2,398,690 bp. Use segment r for 0 bp 2025-01-31 10:03:16,124 DEBUG chr8:119339751-120610751: Successfully fit background model for 1,239,421 bp. Use segment r for 0 bp 2025-01-31 10:03:16,221 DEBUG chr8:120610751-121526751: Successfully fit background model for 898,353 bp. Use segment r for 0 bp 2025-01-31 10:03:16,331 DEBUG chr14:74310251-79962251: Successfully fit background model for 5,369,132 bp. Use segment r for 0 bp 2025-01-31 10:03:16,474 DEBUG chr8:121526751-123998251: Successfully fit background model for 2,318,448 bp. Use segment r for 0 bp 2025-01-31 10:03:16,967 DEBUG chr14:79962251-86063751: Successfully fit background model for 5,463,658 bp. Use segment r for 0 bp 2025-01-31 10:03:17,067 DEBUG chr8:123998251-129401213: Successfully fit background model for 5,019,669 bp. Use segment r for 0 bp 2025-01-31 10:03:17,148 DEBUG chr14:86063751-87570751: Successfully fit background model for 1,402,262 bp. Use segment r for 0 bp 2025-01-31 10:03:18,921 DEBUG chr14:87570751-99044751: Successfully fit background model for 10,442,780 bp. Use segment r for 0 bp 2025-01-31 10:03:19,733 DEBUG chr14:99044751-106861251: Successfully fit background model for 7,169,432 bp. Use segment r for 0 bp 2025-01-31 10:03:20,988 DEBUG chr14:106861251-115904751: Successfully fit background model for 8,164,265 bp. Use segment r for 0 bp 2025-01-31 10:03:21,685 DEBUG chr14:115904751-121272251: Successfully fit background model for 5,005,552 bp. Use segment r for 0 bp 2025-01-31 10:03:21,843 DEBUG chr14:121272251-122003751: Successfully fit background model for 718,903 bp. Use segment r for 0 bp 2025-01-31 10:03:22,494 DEBUG chr14:122003751-124902244: Successfully fit background model for 2,423,947 bp. Use segment r for 0 bp 2025-01-31 10:03:26,551 DEBUG chr9:3002500-13743251: Successfully fit background model for 9,358,527 bp. Use segment r for 0 bp 2025-01-31 10:03:26,868 DEBUG chr9:13743251-15192751: Successfully fit background model for 1,372,937 bp. Use segment r for 0 bp 2025-01-31 10:03:28,066 DEBUG chr9:15192751-20634751: Successfully fit background model for 4,816,646 bp. Use segment r for 0 bp 2025-01-31 10:03:28,404 DEBUG chr9:20634751-22305251: Successfully fit background model for 1,609,171 bp. Use segment r for 0 bp 2025-01-31 10:03:31,963 DEBUG chr9:22305251-38032751: Successfully fit background model for 14,677,355 bp. Use segment r for 0 bp 2025-01-31 10:03:32,152 DEBUG chr9:38032751-39644251: Successfully fit background model for 1,435,325 bp. Use segment r for 0 bp 2025-01-31 10:03:32,532 DEBUG chr9:39644251-43096251: Successfully fit background model for 3,309,902 bp. Use segment r for 0 bp 2025-01-31 10:03:32,657 DEBUG chr9:43096251-44266751: Successfully fit background model for 1,148,242 bp. Use segment r for 0 bp 2025-01-31 10:03:32,679 DEBUG chr9:44266751-44420751: Successfully fit background model for 143,728 bp. Use segment r for 0 bp 2025-01-31 10:03:32,857 DEBUG chr9:44420751-45905251: Successfully fit background model for 1,463,900 bp. Use segment r for 0 bp 2025-01-31 10:03:34,478 DEBUG chr9:45905251-56847251: Successfully fit background model for 10,414,240 bp. Use segment r for 0 bp 2025-01-31 10:03:34,966 DEBUG chr9:56847251-59751751: Successfully fit background model for 2,820,834 bp. Use segment r for 0 bp 2025-01-31 10:03:35,404 DEBUG chr9:59751751-61892251: Successfully fit background model for 2,093,100 bp. Use segment r for 0 bp 2025-01-31 10:03:35,975 DEBUG chr9:61892251-66938751: Successfully fit background model for 4,907,267 bp. Use segment r for 0 bp 2025-01-31 10:03:37,379 DEBUG chr9:66938751-78942751: Successfully fit background model for 11,331,612 bp. Use segment r for 0 bp 2025-01-31 10:03:38,715 DEBUG chr9:78942751-90724251: Successfully fit background model for 10,307,375 bp. Use segment r for 0 bp 2025-01-31 10:03:39,097 DEBUG chr9:90724251-94534251: Successfully fit background model for 3,403,824 bp. Use segment r for 0 bp 2025-01-31 10:03:40,405 DEBUG chr9:94534251-106150251: Successfully fit background model for 11,096,225 bp. Use segment r for 0 bp 2025-01-31 10:03:40,710 DEBUG chr9:106150251-108830751: Successfully fit background model for 2,575,355 bp. Use segment r for 0 bp 2025-01-31 10:03:40,914 DEBUG chr9:108830751-110619751: Successfully fit background model for 1,541,281 bp. Use segment r for 0 bp 2025-01-31 10:03:42,114 DEBUG chr9:110619751-119320251: Successfully fit background model for 8,223,887 bp. Use segment r for 0 bp 2025-01-31 10:03:42,718 DEBUG chr9:119320251-124595110: Successfully fit background model for 4,732,153 bp. Use segment r for 0 bp 2025-01-31 10:04:29,381 DEBUG chr11:3100500-3204251: Successfully fit background model for 76,714 bp. Use segment r for 0 bp 2025-01-31 10:04:29,721 DEBUG chr11:3204251-6699251: Successfully fit background model for 3,360,244 bp. Use segment r for 0 bp 2025-01-31 10:04:30,329 DEBUG chr11:6699251-12672751: Successfully fit background model for 5,366,758 bp. Use segment r for 0 bp 2025-01-31 10:04:30,876 DEBUG chr11:12672751-18717501: Successfully fit background model for 5,392,118 bp. Use segment r for 0 bp 2025-01-31 10:04:31,409 DEBUG chr11:18717501-24428251: Successfully fit background model for 5,395,841 bp. Use segment r for 0 bp 2025-01-31 10:04:31,821 DEBUG chr11:24428251-28748751: Successfully fit background model for 3,871,295 bp. Use segment r for 0 bp 2025-01-31 10:04:32,559 DEBUG chr11:28748751-36449251: Successfully fit background model for 7,159,838 bp. Use segment r for 0 bp 2025-01-31 10:04:33,337 DEBUG chr11:36449251-44450751: Successfully fit background model for 7,450,459 bp. Use segment r for 0 bp 2025-01-31 10:04:33,724 DEBUG chr11:44450751-48772251: Successfully fit background model for 3,985,637 bp. Use segment r for 0 bp 2025-01-31 10:04:33,747 DEBUG chr11:48772251-48876251: Successfully fit background model for 101,029 bp. Use segment r for 0 bp 2025-01-31 10:04:34,146 DEBUG chr13:3000500-8780501: Successfully fit background model for 5,059,169 bp. Use segment r for 0 bp 2025-01-31 10:04:34,902 DEBUG chr11:48876251-58902751: Successfully fit background model for 9,413,877 bp. Use segment r for 0 bp 2025-01-31 10:04:35,419 DEBUG chr11:58902751-62537251: Successfully fit background model for 3,455,612 bp. Use segment r for 173 bp 2025-01-31 10:04:35,521 DEBUG chr13:8780501-21158751: Successfully fit background model for 10,866,013 bp. Use segment r for 0 bp 2025-01-31 10:04:35,553 DEBUG chr13:21158751-21280251: Successfully fit background model for 117,489 bp. Use segment r for 0 bp 2025-01-31 10:04:35,607 DEBUG chr13:21280251-21709751: Successfully fit background model for 395,897 bp. Use segment r for 0 bp 2025-01-31 10:04:35,643 DEBUG chr13:21709751-22058751: Successfully fit background model for 293,397 bp. Use segment r for 0 bp 2025-01-31 10:04:35,771 DEBUG chr13:22058751-23284251: Successfully fit background model for 919,065 bp. Use segment r for 0 bp 2025-01-31 10:04:35,822 DEBUG chr13:23284251-23765751: Successfully fit background model for 446,443 bp. Use segment r for 0 bp 2025-01-31 10:04:35,964 DEBUG chr13:23765751-25229001: Successfully fit background model for 1,385,923 bp. Use segment r for 0 bp 2025-01-31 10:04:36,003 DEBUG chr11:62537251-68965251: Successfully fit background model for 6,202,905 bp. Use segment r for 0 bp 2025-01-31 10:04:36,031 DEBUG chr11:68965251-69126251: Successfully fit background model for 158,568 bp. Use segment r for 0 bp 2025-01-31 10:04:36,183 DEBUG chr11:69126251-70701251: Successfully fit background model for 1,537,527 bp. Use segment r for 0 bp 2025-01-31 10:04:36,269 DEBUG chr13:25229001-27814501: Successfully fit background model for 2,331,599 bp. Use segment r for 0 bp 2025-01-31 10:04:36,579 DEBUG chr11:70701251-74826751: Successfully fit background model for 3,789,315 bp. Use segment r for 0 bp 2025-01-31 10:04:36,595 DEBUG chr11:74826751-74898751: Successfully fit background model for 64,292 bp. Use segment r for 0 bp 2025-01-31 10:04:37,054 DEBUG chr11:74898751-79606751: Successfully fit background model for 4,582,287 bp. Use segment r for 0 bp 2025-01-31 10:04:37,514 DEBUG chr11:79606751-84568251: Successfully fit background model for 4,742,690 bp. Use segment r for 0 bp 2025-01-31 10:04:38,015 DEBUG chr11:84568251-89557501: Successfully fit background model for 4,835,751 bp. Use segment r for 0 bp 2025-01-31 10:04:38,430 DEBUG chr11:89557501-94127501: Successfully fit background model for 4,268,128 bp. Use segment r for 0 bp 2025-01-31 10:04:38,605 DEBUG chr13:27814501-48545251: Successfully fit background model for 19,425,306 bp. Use segment r for 0 bp 2025-01-31 10:04:38,708 DEBUG chr13:48545251-49295251: Successfully fit background model for 739,982 bp. Use segment r for 0 bp 2025-01-31 10:04:38,902 DEBUG chr11:94127501-98573751: Successfully fit background model for 4,349,594 bp. Use segment r for 0 bp 2025-01-31 10:04:38,938 DEBUG chr11:98573751-98835251: Successfully fit background model for 249,397 bp. Use segment r for 0 bp 2025-01-31 10:04:39,102 DEBUG chr11:98835251-100295501: Successfully fit background model for 1,383,395 bp. Use segment r for 0 bp 2025-01-31 10:04:39,219 DEBUG chr13:49295251-54446751: Successfully fit background model for 4,545,265 bp. Use segment r for 0 bp 2025-01-31 10:04:39,328 DEBUG chr13:54446751-55504251: Successfully fit background model for 1,018,592 bp. Use segment r for 0 bp 2025-01-31 10:04:39,591 DEBUG chr13:55504251-58110251: Successfully fit background model for 2,546,803 bp. Use segment r for 0 bp 2025-01-31 10:04:39,753 DEBUG chr13:58110251-59770001: Successfully fit background model for 1,604,293 bp. Use segment r for 0 bp 2025-01-31 10:04:39,890 DEBUG chr11:100295501-108451251: Successfully fit background model for 7,886,025 bp. Use segment r for 0 bp 2025-01-31 10:04:40,098 DEBUG chr11:108451251-110586001: Successfully fit background model for 2,049,939 bp. Use segment r for 0 bp 2025-01-31 10:04:40,230 DEBUG chr13:59770001-63108751: Successfully fit background model for 2,739,537 bp. Use segment r for 18,355 bp 2025-01-31 10:04:40,358 DEBUG chr13:63108751-64312501: Successfully fit background model for 1,155,564 bp. Use segment r for 0 bp 2025-01-31 10:04:40,515 DEBUG chr11:110586001-115149251: Successfully fit background model for 4,383,094 bp. Use segment r for 0 bp 2025-01-31 10:04:40,709 DEBUG chr11:115149251-117017251: Successfully fit background model for 1,802,579 bp. Use segment r for 0 bp 2025-01-31 10:04:41,261 DEBUG chr11:117017251-122082543: Successfully fit background model for 4,814,924 bp. Use segment r for 0 bp 2025-01-31 10:04:41,399 DEBUG chr12:3000500-5418751: Successfully fit background model for 2,224,498 bp. Use segment r for 0 bp 2025-01-31 10:04:41,978 DEBUG chr13:64312501-73248751: Successfully fit background model for 6,847,318 bp. Use segment r for 1,957 bp 2025-01-31 10:04:42,056 DEBUG chr13:73248751-73832251: Successfully fit background model for 577,112 bp. Use segment r for 0 bp 2025-01-31 10:04:42,114 DEBUG chr15:3050500-5087751: Successfully fit background model for 1,734,031 bp. Use segment r for 0 bp 2025-01-31 10:04:42,129 DEBUG chr15:5087751-5162501: Successfully fit background model for 70,068 bp. Use segment r for 0 bp 2025-01-31 10:04:42,387 DEBUG chr13:73832251-76929251: Successfully fit background model for 2,798,462 bp. Use segment r for 0 bp 2025-01-31 10:04:42,527 DEBUG chr13:76929251-78162751: Successfully fit background model for 1,064,996 bp. Use segment r for 0 bp 2025-01-31 10:04:42,536 DEBUG chr15:5162501-9015251: Successfully fit background model for 3,536,660 bp. Use segment r for 0 bp 2025-01-31 10:04:42,538 DEBUG chr13:78162751-78213751: Successfully fit background model for 50,897 bp. Use segment r for 0 bp 2025-01-31 10:04:42,552 DEBUG chr15:9015251-9095251: Successfully fit background model for 39,650 bp. Use segment r for 0 bp 2025-01-31 10:04:42,824 DEBUG chr13:78213751-80881751: Successfully fit background model for 2,395,777 bp. Use segment r for 0 bp 2025-01-31 10:04:42,838 DEBUG chr13:80881751-80933251: Successfully fit background model for 51,270 bp. Use segment r for 0 bp 2025-01-31 10:04:42,918 DEBUG chr13:80933251-81625501: Successfully fit background model for 650,614 bp. Use segment r for 0 bp 2025-01-31 10:04:42,939 DEBUG chr13:81625501-81785251: Successfully fit background model for 149,907 bp. Use segment r for 0 bp 2025-01-31 10:04:42,991 DEBUG chr15:9095251-13527751: Successfully fit background model for 4,131,347 bp. Use segment r for 0 bp 2025-01-31 10:04:43,139 DEBUG chr13:81785251-83686751: Successfully fit background model for 1,749,112 bp. Use segment r for 0 bp 2025-01-31 10:04:43,152 DEBUG chr13:83686751-83739251: Successfully fit background model for 45,290 bp. Use segment r for 0 bp 2025-01-31 10:04:43,853 DEBUG chr13:83739251-90901501: Successfully fit background model for 6,399,890 bp. Use segment r for 0 bp 2025-01-31 10:04:44,415 DEBUG chr13:90901501-96919251: Successfully fit background model for 5,669,475 bp. Use segment r for 0 bp 2025-01-31 10:04:44,524 DEBUG chr15:13527751-27415751: Successfully fit background model for 12,462,983 bp. Use segment r for 0 bp 2025-01-31 10:04:44,714 DEBUG chr12:5418751-24562251: Successfully fit background model for 13,687,695 bp. Use segment r for 8,527 bp 2025-01-31 10:04:44,771 DEBUG chr13:96919251-100651001: Successfully fit background model for 3,499,681 bp. Use segment r for 0 bp 2025-01-31 10:04:44,771 DEBUG chr12:24562251-24848751: Successfully fit background model for 272,599 bp. Use segment r for 0 bp 2025-01-31 10:04:44,877 DEBUG chr15:27415751-31228251: Successfully fit background model for 3,481,797 bp. Use segment r for 0 bp 2025-01-31 10:04:45,329 DEBUG chr15:31228251-36147251: Successfully fit background model for 4,434,528 bp. Use segment r for 0 bp 2025-01-31 10:04:45,474 DEBUG chr12:24848751-31925751: Successfully fit background model for 6,732,666 bp. Use segment r for 0 bp 2025-01-31 10:04:45,515 DEBUG chr16:3092500-3843251: Successfully fit background model for 380,277 bp. Use segment r for 0 bp 2025-01-31 10:04:45,545 DEBUG chr15:36147251-38440251: Successfully fit background model for 2,191,406 bp. Use segment r for 0 bp 2025-01-31 10:04:45,607 DEBUG chr12:31925751-33214251: Successfully fit background model for 1,206,396 bp. Use segment r for 0 bp 2025-01-31 10:04:45,739 DEBUG chr16:3843251-5265001: Successfully fit background model for 1,363,461 bp. Use segment r for 0 bp 2025-01-31 10:04:46,008 DEBUG chr13:100651001-111683001: Successfully fit background model for 10,256,146 bp. Use segment r for 0 bp 2025-01-31 10:04:46,113 DEBUG chr16:5265001-8024001: Successfully fit background model for 2,651,091 bp. Use segment r for 0 bp 2025-01-31 10:04:46,130 DEBUG chr13:111683001-112744251: Successfully fit background model for 1,024,942 bp. Use segment r for 0 bp 2025-01-31 10:04:46,223 DEBUG chr15:38440251-45166251: Successfully fit background model for 6,044,809 bp. Use segment r for 0 bp 2025-01-31 10:04:46,403 DEBUG chr13:112744251-115320751: Successfully fit background model for 2,442,861 bp. Use segment r for 0 bp 2025-01-31 10:04:46,613 DEBUG chr15:45166251-49469751: Successfully fit background model for 3,842,174 bp. Use segment r for 0 bp 2025-01-31 10:04:46,808 DEBUG chr13:115320751-119426251: Successfully fit background model for 3,751,031 bp. Use segment r for 0 bp 2025-01-31 10:04:46,921 DEBUG chr13:119426251-120421639: Successfully fit background model for 403,446 bp. Use segment r for 0 bp 2025-01-31 10:04:47,082 DEBUG chr16:8024001-14480251: Successfully fit background model for 6,085,355 bp. Use segment r for 0 bp 2025-01-31 10:04:47,477 DEBUG chr15:49469751-57626751: Successfully fit background model for 7,442,135 bp. Use segment r for 0 bp 2025-01-31 10:04:47,481 DEBUG chr16:14480251-17123751: Successfully fit background model for 2,317,027 bp. Use segment r for 0 bp 2025-01-31 10:04:47,615 DEBUG chr15:57626751-59047251: Successfully fit background model for 1,381,891 bp. Use segment r for 0 bp 2025-01-31 10:04:47,737 DEBUG chr16:17123751-19016251: Successfully fit background model for 1,820,734 bp. Use segment r for 0 bp 2025-01-31 10:04:47,846 DEBUG chr16:19016251-19585001: Successfully fit background model for 454,771 bp. Use segment r for 0 bp 2025-01-31 10:04:48,410 DEBUG chr15:59047251-67113751: Successfully fit background model for 7,375,510 bp. Use segment r for 0 bp 2025-01-31 10:04:48,422 DEBUG chr16:19585001-23577751: Successfully fit background model for 3,717,630 bp. Use segment r for 0 bp 2025-01-31 10:04:48,433 DEBUG chr15:67113751-67179751: Successfully fit background model for 62,837 bp. Use segment r for 0 bp 2025-01-31 10:04:48,814 DEBUG chr12:33214251-51666751: Successfully fit background model for 16,580,469 bp. Use segment r for 129,849 bp 2025-01-31 10:04:48,992 DEBUG chr15:67179751-73053751: Successfully fit background model for 5,414,768 bp. Use segment r for 0 bp 2025-01-31 10:04:49,017 DEBUG chr15:73053751-73187251: Successfully fit background model for 126,093 bp. Use segment r for 0 bp 2025-01-31 10:04:49,259 DEBUG chr15:73187251-75709751: Successfully fit background model for 2,357,475 bp. Use segment r for 0 bp 2025-01-31 10:04:49,284 DEBUG chr16:23577751-29230251: Successfully fit background model for 5,298,550 bp. Use segment r for 0 bp 2025-01-31 10:04:49,696 DEBUG chr12:51666751-60162001: Successfully fit background model for 7,668,834 bp. Use segment r for 0 bp 2025-01-31 10:04:49,903 DEBUG chr15:75709751-82381251: Successfully fit background model for 6,384,478 bp. Use segment r for 0 bp 2025-01-31 10:04:49,990 DEBUG chr12:60162001-63214251: Successfully fit background model for 2,685,435 bp. Use segment r for 0 bp 2025-01-31 10:04:50,227 DEBUG chr15:82381251-85826251: Successfully fit background model for 3,284,552 bp. Use segment r for 0 bp 2025-01-31 10:04:50,521 DEBUG chr15:85826251-88693251: Successfully fit background model for 2,786,554 bp. Use segment r for 0 bp 2025-01-31 10:04:50,591 DEBUG chr15:88693251-89318251: Successfully fit background model for 598,702 bp. Use segment r for 0 bp 2025-01-31 10:04:50,619 DEBUG chr12:63214251-69154251: Successfully fit background model for 5,331,059 bp. Use segment r for 0 bp 2025-01-31 10:04:50,621 DEBUG chr16:29230251-38903751: Successfully fit background model for 9,237,938 bp. Use segment r for 0 bp 2025-01-31 10:04:50,872 DEBUG chr12:69154251-71881751: Successfully fit background model for 2,616,074 bp. Use segment r for 0 bp 2025-01-31 10:04:51,267 DEBUG chr12:71881751-76176751: Successfully fit background model for 4,079,643 bp. Use segment r for 0 bp 2025-01-31 10:04:51,338 DEBUG chr12:76176751-76777751: Successfully fit background model for 560,316 bp. Use segment r for 0 bp 2025-01-31 10:04:51,631 DEBUG chr12:76777751-79956251: Successfully fit background model for 2,992,011 bp. Use segment r for 0 bp 2025-01-31 10:04:51,640 DEBUG chr15:89318251-98502251: Successfully fit background model for 8,673,701 bp. Use segment r for 0 bp 2025-01-31 10:04:51,738 DEBUG chr12:79956251-80980251: Successfully fit background model for 990,759 bp. Use segment r for 0 bp 2025-01-31 10:04:51,765 DEBUG chr15:98502251-99726251: Successfully fit background model for 1,189,036 bp. Use segment r for 0 bp 2025-01-31 10:04:51,938 DEBUG chr12:80980251-83024751: Successfully fit background model for 1,879,292 bp. Use segment r for 0 bp 2025-01-31 10:04:51,987 DEBUG chr15:99726251-101970251: Successfully fit background model for 2,159,636 bp. Use segment r for 0 bp 2025-01-31 10:04:52,116 DEBUG chr15:101970251-103367251: Successfully fit background model for 1,362,737 bp. Use segment r for 0 bp 2025-01-31 10:04:52,180 DEBUG chr15:103367251-104043685: Successfully fit background model for 429,654 bp. Use segment r for 0 bp 2025-01-31 10:04:52,335 DEBUG chr12:83024751-87265751: Successfully fit background model for 4,134,576 bp. Use segment r for 0 bp 2025-01-31 10:04:52,850 DEBUG chr16:38903751-52364251: Successfully fit background model for 12,349,227 bp. Use segment r for 0 bp 2025-01-31 10:04:52,973 DEBUG chr12:87265751-92690251: Successfully fit background model for 4,632,330 bp. Use segment r for 0 bp 2025-01-31 10:04:53,181 DEBUG chr16:52364251-55819751: Successfully fit background model for 3,088,364 bp. Use segment r for 0 bp 2025-01-31 10:04:53,444 DEBUG chr12:92690251-96767001: Successfully fit background model for 3,658,645 bp. Use segment r for 0 bp 2025-01-31 10:04:53,583 DEBUG chr16:55819751-59898001: Successfully fit background model for 3,629,968 bp. Use segment r for 0 bp 2025-01-31 10:04:53,714 DEBUG chr12:96767001-99232251: Successfully fit background model for 2,274,788 bp. Use segment r for 0 bp 2025-01-31 10:04:53,973 DEBUG chr16:59898001-63991251: Successfully fit background model for 3,640,042 bp. Use segment r for 0 bp 2025-01-31 10:04:54,350 DEBUG chr12:99232251-104932251: Successfully fit background model for 5,335,934 bp. Use segment r for 0 bp 2025-01-31 10:04:54,374 DEBUG chr12:104932251-105053251: Successfully fit background model for 118,259 bp. Use segment r for 0 bp 2025-01-31 10:04:55,015 DEBUG chr12:105053251-110372251: Successfully fit background model for 5,139,462 bp. Use segment r for 0 bp 2025-01-31 10:04:55,321 DEBUG chr12:110372251-113035751: Successfully fit background model for 2,591,150 bp. Use segment r for 0 bp 2025-01-31 10:04:55,958 DEBUG chr12:113035751-118298751: Successfully fit background model for 4,619,332 bp. Use segment r for 0 bp 2025-01-31 10:04:55,974 DEBUG chr12:118298751-118349751: Successfully fit background model for 45,148 bp. Use segment r for 0 bp 2025-01-31 10:04:56,210 DEBUG chr12:118349751-120129022: Successfully fit background model for 1,492,292 bp. Use segment r for 0 bp 2025-01-31 10:04:56,574 DEBUG chr16:63991251-87686751: Successfully fit background model for 21,558,118 bp. Use segment r for 0 bp 2025-01-31 10:04:56,854 DEBUG chr16:87686751-90116751: Successfully fit background model for 2,262,376 bp. Use segment r for 0 bp 2025-01-31 10:04:57,280 DEBUG chr16:90116751-94472251: Successfully fit background model for 4,230,121 bp. Use segment r for 0 bp 2025-01-31 10:04:57,639 DEBUG chr16:94472251-98207768: Successfully fit background model for 3,476,502 bp. Use segment r for 0 bp 2025-01-31 10:05:13,695 DEBUG chr17:3002000-17650751: Successfully fit background model for 12,276,552 bp. Use segment r for 0 bp 2025-01-31 10:05:13,954 DEBUG chr17:17650751-20455251: Successfully fit background model for 2,513,856 bp. Use segment r for 0 bp 2025-01-31 10:05:14,245 DEBUG chr17:20455251-23531751: Successfully fit background model for 2,370,638 bp. Use segment r for 0 bp 2025-01-31 10:05:14,782 DEBUG chr17:23531751-29149251: Successfully fit background model for 5,435,280 bp. Use segment r for 0 bp 2025-01-31 10:05:15,182 DEBUG chr17:29149251-33816751: Successfully fit background model for 4,383,379 bp. Use segment r for 0 bp 2025-01-31 10:05:15,224 DEBUG chr17:33816751-34157501: Successfully fit background model for 322,345 bp. Use segment r for 0 bp 2025-01-31 10:05:15,452 DEBUG chr17:34157501-36529251: Successfully fit background model for 2,106,886 bp. Use segment r for 0 bp 2025-01-31 10:05:15,511 DEBUG chr17:36529251-37086751: Successfully fit background model for 507,717 bp. Use segment r for 0 bp 2025-01-31 10:05:16,182 DEBUG chr17:37086751-44301751: Successfully fit background model for 6,308,838 bp. Use segment r for 0 bp 2025-01-31 10:05:16,307 DEBUG chr17:44301751-45453751: Successfully fit background model for 1,107,433 bp. Use segment r for 0 bp 2025-01-31 10:05:16,617 DEBUG chr17:45453751-48617751: Successfully fit background model for 3,062,547 bp. Use segment r for 0 bp 2025-01-31 10:05:17,316 DEBUG chr17:48617751-55930751: Successfully fit background model for 6,675,550 bp. Use segment r for 0 bp 2025-01-31 10:05:17,455 DEBUG chr17:55930751-57376001: Successfully fit background model for 1,408,206 bp. Use segment r for 0 bp 2025-01-31 10:05:17,901 DEBUG chr17:57376001-62140251: Successfully fit background model for 4,279,886 bp. Use segment r for 0 bp 2025-01-31 10:05:19,395 DEBUG chr17:62140251-76215751: Successfully fit background model for 13,201,866 bp. Use segment r for 0 bp 2025-01-31 10:05:19,531 DEBUG chr17:76215751-77578251: Successfully fit background model for 1,262,317 bp. Use segment r for 0 bp 2025-01-31 10:05:20,732 DEBUG chr17:77578251-89160251: Successfully fit background model for 10,997,491 bp. Use segment r for 0 bp 2025-01-31 10:05:21,248 DEBUG chr17:89160251-94987271: Successfully fit background model for 5,181,109 bp. Use segment r for 0 bp 2025-01-31 10:05:53,477 DEBUG chr18:3000500-12736251: Successfully fit background model for 8,747,889 bp. Use segment r for 0 bp 2025-01-31 10:05:53,535 DEBUG chr19:3080000-7618751: Successfully fit background model for 4,234,514 bp. Use segment r for 0 bp 2025-01-31 10:05:53,652 DEBUG chr19:7618751-8695251: Successfully fit background model for 832,746 bp. Use segment r for 0 bp 2025-01-31 10:05:53,707 DEBUG chr19:8695251-9136251: Successfully fit background model for 428,586 bp. Use segment r for 0 bp 2025-01-31 10:05:53,907 DEBUG chr19:9136251-10983751: Successfully fit background model for 1,504,903 bp. Use segment r for 0 bp 2025-01-31 10:05:53,970 DEBUG chr19:10983751-11564251: Successfully fit background model for 514,208 bp. Use segment r for 0 bp 2025-01-31 10:05:54,019 DEBUG chr19:11564251-12018251: Successfully fit background model for 423,655 bp. Use segment r for 0 bp 2025-01-31 10:05:54,103 DEBUG chr18:12736251-19049751: Successfully fit background model for 5,793,640 bp. Use segment r for 0 bp 2025-01-31 10:05:54,364 DEBUG chr19:12018251-15534751: Successfully fit background model for 3,185,895 bp. Use segment r for 0 bp 2025-01-31 10:05:54,552 DEBUG chr19:15534751-17472251: Successfully fit background model for 1,856,937 bp. Use segment r for 0 bp 2025-01-31 10:05:55,213 DEBUG chr19:17472251-23973751: Successfully fit background model for 6,091,579 bp. Use segment r for 0 bp 2025-01-31 10:05:55,320 DEBUG chr19:23973751-24936751: Successfully fit background model for 928,002 bp. Use segment r for 0 bp 2025-01-31 10:05:55,658 DEBUG chr19:24936751-28405751: Successfully fit background model for 3,299,979 bp. Use segment r for 0 bp 2025-01-31 10:05:55,874 DEBUG chr18:19049751-34243751: Successfully fit background model for 14,017,207 bp. Use segment r for 0 bp 2025-01-31 10:05:56,123 DEBUG chr19:28405751-33438251: Successfully fit background model for 4,808,924 bp. Use segment r for 0 bp 2025-01-31 10:05:56,143 DEBUG chr18:34243751-36804251: Successfully fit background model for 2,501,447 bp. Use segment r for 0 bp 2025-01-31 10:05:56,255 DEBUG chr18:36804251-37817751: Successfully fit background model for 882,367 bp. Use segment r for 0 bp 2025-01-31 10:05:56,311 DEBUG chr18:37817751-38296001: Successfully fit background model for 471,331 bp. Use segment r for 0 bp 2025-01-31 10:05:56,331 DEBUG chr19:33438251-35607251: Successfully fit background model for 1,893,027 bp. Use segment r for 0 bp 2025-01-31 10:05:56,914 DEBUG chr19:35607251-41717251: Successfully fit background model for 5,613,834 bp. Use segment r for 0 bp 2025-01-31 10:05:57,374 DEBUG chr19:41717251-46983751: Successfully fit background model for 5,094,396 bp. Use segment r for 0 bp 2025-01-31 10:05:57,603 DEBUG chr19:46983751-49441251: Successfully fit background model for 2,338,599 bp. Use segment r for 0 bp 2025-01-31 10:05:57,875 DEBUG chr19:49441251-52349751: Successfully fit background model for 2,682,283 bp. Use segment r for 0 bp 2025-01-31 10:05:58,787 DEBUG chr18:38296001-60476751: Successfully fit background model for 20,554,081 bp. Use segment r for 0 bp 2025-01-31 10:05:58,890 DEBUG chr19:52349751-61431566: Successfully fit background model for 8,614,670 bp. Use segment r for 0 bp 2025-01-31 10:05:59,146 DEBUG chr18:60476751-63745751: Successfully fit background model for 3,140,535 bp. Use segment r for 0 bp 2025-01-31 10:05:59,468 DEBUG chr18:63745751-67196751: Successfully fit background model for 3,308,765 bp. Use segment r for 0 bp 2025-01-31 10:05:59,533 DEBUG chr18:67196751-67747751: Successfully fit background model for 539,486 bp. Use segment r for 0 bp 2025-01-31 10:05:59,791 DEBUG chr18:67747751-70470251: Successfully fit background model for 2,588,101 bp. Use segment r for 0 bp 2025-01-31 10:05:59,814 DEBUG chr18:70470251-70578251: Successfully fit background model for 94,267 bp. Use segment r for 0 bp 2025-01-31 10:06:00,115 DEBUG chr18:70578251-73739251: Successfully fit background model for 2,888,948 bp. Use segment r for 0 bp 2025-01-31 10:06:00,528 DEBUG chr18:73739251-78049251: Successfully fit background model for 4,050,491 bp. Use segment r for 0 bp 2025-01-31 10:06:01,341 DEBUG chr18:78049251-85930251: Successfully fit background model for 7,353,143 bp. Use segment r for 0 bp 2025-01-31 10:06:01,767 DEBUG chr18:85930251-90702639: Successfully fit background model for 4,048,487 bp. Use segment r for 0 bp 2025-01-31 10:07:06,552 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:07:06,554 INFO Calculating per-bp p-values 2025-01-31 10:07:06,555 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:07:06,602 DEBUG chr1: Calculating p-values 2025-01-31 10:07:06,605 DEBUG chr4: Calculating p-values 2025-01-31 10:07:06,607 DEBUG chr2: Calculating p-values 2025-01-31 10:07:06,607 DEBUG chrX: Calculating p-values 2025-01-31 10:07:06,607 DEBUG chr3: Calculating p-values 2025-01-31 10:07:06,625 DEBUG chr5: Calculating p-values 2025-01-31 10:07:35,375 DEBUG Saving p-values for chrX 2025-01-31 10:07:39,991 DEBUG Saving p-values for chr5 2025-01-31 10:07:40,832 DEBUG Saving p-values for chr3 2025-01-31 10:07:43,647 DEBUG Saving p-values for chr4 2025-01-31 10:07:49,665 DEBUG Saving p-values for chr2 2025-01-31 10:07:56,686 DEBUG Saving p-values for chr1 2025-01-31 10:08:03,033 DEBUG chr6: Calculating p-values 2025-01-31 10:08:06,935 DEBUG chr7: Calculating p-values 2025-01-31 10:08:10,667 DEBUG chr10: Calculating p-values 2025-01-31 10:08:14,827 DEBUG chr8: Calculating p-values 2025-01-31 10:08:23,710 DEBUG chr14: Calculating p-values 2025-01-31 10:08:34,068 DEBUG Saving p-values for chr6 2025-01-31 10:08:36,851 DEBUG chr9: Calculating p-values 2025-01-31 10:08:37,325 DEBUG Saving p-values for chr10 2025-01-31 10:08:40,428 DEBUG Saving p-values for chr7 2025-01-31 10:08:45,108 DEBUG Saving p-values for chr8 2025-01-31 10:08:46,549 DEBUG Saving p-values for chr14 2025-01-31 10:08:58,939 DEBUG chr11: Calculating p-values 2025-01-31 10:09:02,209 DEBUG chr13: Calculating p-values 2025-01-31 10:09:04,667 DEBUG chr12: Calculating p-values 2025-01-31 10:09:06,107 DEBUG chr15: Calculating p-values 2025-01-31 10:09:08,008 DEBUG Saving p-values for chr9 2025-01-31 10:09:10,906 DEBUG chr16: Calculating p-values 2025-01-31 10:09:27,260 DEBUG Saving p-values for chr12 2025-01-31 10:09:29,768 DEBUG Saving p-values for chr16 2025-01-31 10:09:31,338 DEBUG chr17: Calculating p-values 2025-01-31 10:09:31,874 DEBUG Saving p-values for chr13 2025-01-31 10:09:31,960 DEBUG Saving p-values for chr11 2025-01-31 10:09:35,622 DEBUG Saving p-values for chr15 2025-01-31 10:09:45,780 DEBUG chrY: Calculating p-values 2025-01-31 10:09:48,056 DEBUG chr18: Calculating p-values 2025-01-31 10:09:49,939 DEBUG chr19: Calculating p-values 2025-01-31 10:09:53,700 DEBUG Saving p-values for chr17 2025-01-31 10:10:02,958 DEBUG Saving p-values for chr18 2025-01-31 10:10:03,819 DEBUG Saving p-values for chr19 2025-01-31 10:10:20,130 DEBUG Results of calc_pvals emitted. 2025-01-31 10:10:20,130 INFO Converting threshold values to bigwig 2025-01-31 10:10:20,130 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:10:34,903 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:11:06,773 INFO Converting background quantile values to bigwig 2025-01-31 10:11:06,773 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:11:41,297 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:12:08,931 INFO Calculating per-bp FDRs 2025-01-31 10:12:08,932 DEBUG AG81961: Extracting raw P-values 2025-01-31 10:12:45,168 DEBUG AG81961: Computing FDR 2025-01-31 10:13:04,316 DEBUG AG81961: Saving FDRs to parquet 2025-01-31 10:14:15,466 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:14:15,469 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:14:15,470 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:14:19,054 DEBUG chr3: Calling hotspots 2025-01-31 10:14:19,124 DEBUG chr5: Calling hotspots 2025-01-31 10:14:19,259 DEBUG chr4: Calling hotspots 2025-01-31 10:14:19,524 DEBUG chrX: Calling hotspots 2025-01-31 10:14:19,575 DEBUG chr2: Calling hotspots 2025-01-31 10:14:19,835 DEBUG chr1: Calling hotspots 2025-01-31 10:14:25,928 DEBUG chr3: 3532 hotspots called 2025-01-31 10:14:25,930 DEBUG chr5: 4518 hotspots called 2025-01-31 10:14:26,083 DEBUG chr4: 4745 hotspots called 2025-01-31 10:14:26,721 DEBUG chrX: 2281 hotspots called 2025-01-31 10:14:28,023 DEBUG chr2: 5817 hotspots called 2025-01-31 10:14:28,615 DEBUG chr1: 4740 hotspots called 2025-01-31 10:14:29,074 DEBUG chr10: Calling hotspots 2025-01-31 10:14:29,227 DEBUG chr7: Calling hotspots 2025-01-31 10:14:29,257 DEBUG chr6: Calling hotspots 2025-01-31 10:14:29,545 DEBUG chr8: Calling hotspots 2025-01-31 10:14:30,535 DEBUG chr14: Calling hotspots 2025-01-31 10:14:31,210 DEBUG chr9: Calling hotspots 2025-01-31 10:14:34,717 DEBUG chr10: 3363 hotspots called 2025-01-31 10:14:35,308 DEBUG chr8: 3504 hotspots called 2025-01-31 10:14:35,473 DEBUG chr14: 2303 hotspots called 2025-01-31 10:14:35,518 DEBUG chr6: 3710 hotspots called 2025-01-31 10:14:35,522 DEBUG chr7: 4672 hotspots called 2025-01-31 10:14:35,808 DEBUG chr9: 3956 hotspots called 2025-01-31 10:14:36,907 DEBUG chr11: Calling hotspots 2025-01-31 10:14:37,428 DEBUG chr16: Calling hotspots 2025-01-31 10:14:37,602 DEBUG chr15: Calling hotspots 2025-01-31 10:14:37,675 DEBUG chr12: Calling hotspots 2025-01-31 10:14:37,675 DEBUG chr17: Calling hotspots 2025-01-31 10:14:37,750 DEBUG chr13: Calling hotspots 2025-01-31 10:14:40,693 DEBUG chr11: 5464 hotspots called 2025-01-31 10:14:40,695 DEBUG chr17: 3107 hotspots called 2025-01-31 10:14:40,784 DEBUG chr16: 2280 hotspots called 2025-01-31 10:14:40,842 DEBUG chr15: 3187 hotspots called 2025-01-31 10:14:41,673 DEBUG chr13: 3533 hotspots called 2025-01-31 10:14:41,686 DEBUG chr12: 2737 hotspots called 2025-01-31 10:14:41,687 DEBUG chr19: Calling hotspots 2025-01-31 10:14:41,968 DEBUG chr18: Calling hotspots 2025-01-31 10:14:43,331 DEBUG chr19: 2349 hotspots called 2025-01-31 10:14:44,109 DEBUG chr18: 1838 hotspots called 2025-01-31 10:14:44,417 DEBUG Results of call_hotspots emitted. 2025-01-31 10:14:44,456 INFO There are 71636 hotspots called at FDR=0.05 2025-01-31 10:14:47,887 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:14:47,887 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:14:57,866 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:14:57,979 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:14:58,125 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:14:58,246 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:14:59,905 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:15:00,774 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:15:07,256 DEBUG chr3: 4162 peaks called 2025-01-31 10:15:07,518 DEBUG chr4: 5456 peaks called 2025-01-31 10:15:08,001 DEBUG chr5: 5292 peaks called 2025-01-31 10:15:08,433 DEBUG chrX: 2570 peaks called 2025-01-31 10:15:09,945 DEBUG chr2: 6791 peaks called 2025-01-31 10:15:12,652 DEBUG chr1: 5482 peaks called 2025-01-31 10:15:15,352 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:15:15,678 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:15:15,900 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:15:16,150 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:15:16,715 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:15:18,921 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:15:24,637 DEBUG chr8: 4163 peaks called 2025-01-31 10:15:26,105 DEBUG chr10: 3985 peaks called 2025-01-31 10:15:26,366 DEBUG chr14: 2702 peaks called 2025-01-31 10:15:26,613 DEBUG chr7: 5615 peaks called 2025-01-31 10:15:26,681 DEBUG chr6: 4257 peaks called 2025-01-31 10:15:27,446 DEBUG chr9: 4649 peaks called 2025-01-31 10:15:31,768 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:15:32,480 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:15:32,531 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:15:33,179 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:15:33,194 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:15:33,575 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:15:38,416 DEBUG chr17: 3736 peaks called 2025-01-31 10:15:39,125 DEBUG chr16: 2658 peaks called 2025-01-31 10:15:39,310 DEBUG chr11: 6606 peaks called 2025-01-31 10:15:39,343 DEBUG chr15: 3738 peaks called 2025-01-31 10:15:39,928 DEBUG chr13: 4177 peaks called 2025-01-31 10:15:40,110 DEBUG chr12: 3187 peaks called 2025-01-31 10:15:41,516 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:15:42,158 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:15:46,157 DEBUG chr19: 2834 peaks called 2025-01-31 10:15:49,487 DEBUG chr18: 2113 peaks called 2025-01-31 10:15:50,850 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:15:50,886 INFO There are 84173 peaks called at FDR=0.05 2025-01-31 10:15:52,395 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:15:52,395 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:15:56,272 DEBUG chr5: Calling hotspots 2025-01-31 10:15:56,380 DEBUG chr4: Calling hotspots 2025-01-31 10:15:56,484 DEBUG chr3: Calling hotspots 2025-01-31 10:15:56,504 DEBUG chr2: Calling hotspots 2025-01-31 10:15:56,524 DEBUG chrX: Calling hotspots 2025-01-31 10:15:56,917 DEBUG chr1: Calling hotspots 2025-01-31 10:16:04,441 DEBUG chr5: 3807 hotspots called 2025-01-31 10:16:06,047 DEBUG chr4: 3960 hotspots called 2025-01-31 10:16:06,807 DEBUG chr3: 2902 hotspots called 2025-01-31 10:16:07,406 DEBUG chrX: 1750 hotspots called 2025-01-31 10:16:08,146 DEBUG chr6: Calling hotspots 2025-01-31 10:16:08,645 DEBUG chr2: 4858 hotspots called 2025-01-31 10:16:09,407 DEBUG chr7: Calling hotspots 2025-01-31 10:16:10,145 DEBUG chr1: 3785 hotspots called 2025-01-31 10:16:10,154 DEBUG chr10: Calling hotspots 2025-01-31 10:16:10,326 DEBUG chr8: Calling hotspots 2025-01-31 10:16:11,224 DEBUG chr14: Calling hotspots 2025-01-31 10:16:12,539 DEBUG chr6: 3008 hotspots called 2025-01-31 10:16:12,596 DEBUG chr9: Calling hotspots 2025-01-31 10:16:13,222 DEBUG chr7: 3956 hotspots called 2025-01-31 10:16:13,922 DEBUG chr8: 2896 hotspots called 2025-01-31 10:16:13,933 DEBUG chr10: 2773 hotspots called 2025-01-31 10:16:14,385 DEBUG chr14: 1893 hotspots called 2025-01-31 10:16:14,892 DEBUG chr11: Calling hotspots 2025-01-31 10:16:15,516 DEBUG chr13: Calling hotspots 2025-01-31 10:16:15,947 DEBUG chr9: 3322 hotspots called 2025-01-31 10:16:16,273 DEBUG chr15: Calling hotspots 2025-01-31 10:16:16,517 DEBUG chr16: Calling hotspots 2025-01-31 10:16:16,530 DEBUG chr12: Calling hotspots 2025-01-31 10:16:17,897 DEBUG chr17: Calling hotspots 2025-01-31 10:16:19,080 DEBUG chr11: 4704 hotspots called 2025-01-31 10:16:20,548 DEBUG chr13: 2876 hotspots called 2025-01-31 10:16:20,902 DEBUG chr18: Calling hotspots 2025-01-31 10:16:21,731 DEBUG chr15: 2589 hotspots called 2025-01-31 10:16:21,826 DEBUG chr19: Calling hotspots 2025-01-31 10:16:21,827 DEBUG chr16: 1844 hotspots called 2025-01-31 10:16:22,691 DEBUG chr12: 2253 hotspots called 2025-01-31 10:16:22,864 DEBUG chr17: 2628 hotspots called 2025-01-31 10:16:25,072 DEBUG chr19: 2016 hotspots called 2025-01-31 10:16:25,721 DEBUG chr18: 1508 hotspots called 2025-01-31 10:16:26,274 DEBUG Results of call_hotspots emitted. 2025-01-31 10:16:26,310 INFO There are 59328 hotspots called at FDR=0.01 2025-01-31 10:16:29,126 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:16:29,127 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:16:40,080 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:16:40,319 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:16:40,361 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:16:40,732 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:16:41,192 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:16:41,606 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:16:57,760 DEBUG chr5: 4455 peaks called 2025-01-31 10:16:59,266 DEBUG chr3: 3440 peaks called 2025-01-31 10:16:59,358 DEBUG chr4: 4528 peaks called 2025-01-31 10:17:03,218 DEBUG chrX: 2007 peaks called 2025-01-31 10:17:03,441 DEBUG chr2: 5677 peaks called 2025-01-31 10:17:04,723 DEBUG chr1: 4483 peaks called 2025-01-31 10:17:07,394 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:17:08,742 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:17:09,208 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:17:10,582 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:17:10,979 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:17:12,382 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:17:24,136 DEBUG chr10: 3306 peaks called 2025-01-31 10:17:24,163 DEBUG chr6: 3475 peaks called 2025-01-31 10:17:25,668 DEBUG chr14: 2230 peaks called 2025-01-31 10:17:25,782 DEBUG chr8: 3442 peaks called 2025-01-31 10:17:26,573 DEBUG chr7: 4728 peaks called 2025-01-31 10:17:27,283 DEBUG chr9: 3894 peaks called 2025-01-31 10:17:32,446 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:17:32,642 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:17:32,656 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:17:32,693 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:17:33,238 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:17:33,891 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:17:40,516 DEBUG chr16: 2161 peaks called 2025-01-31 10:17:41,517 DEBUG chr15: 3070 peaks called 2025-01-31 10:17:41,843 DEBUG chr17: 3143 peaks called 2025-01-31 10:17:43,189 DEBUG chr13: 3430 peaks called 2025-01-31 10:17:43,624 DEBUG chr12: 2629 peaks called 2025-01-31 10:17:43,660 DEBUG chr11: 5667 peaks called 2025-01-31 10:17:44,881 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:17:46,138 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:17:54,584 DEBUG chr19: 2418 peaks called 2025-01-31 10:17:58,400 DEBUG chr18: 1751 peaks called 2025-01-31 10:18:00,052 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:18:00,083 INFO There are 69934 peaks called at FDR=0.01 2025-01-31 10:18:01,407 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:18:01,408 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:18:05,413 DEBUG chr3: Calling hotspots 2025-01-31 10:18:05,425 DEBUG chr5: Calling hotspots 2025-01-31 10:18:05,497 DEBUG chr4: Calling hotspots 2025-01-31 10:18:05,697 DEBUG chrX: Calling hotspots 2025-01-31 10:18:05,796 DEBUG chr2: Calling hotspots 2025-01-31 10:18:05,886 DEBUG chr1: Calling hotspots 2025-01-31 10:18:17,602 DEBUG chr5: 3283 hotspots called 2025-01-31 10:18:18,768 DEBUG chr4: 3311 hotspots called 2025-01-31 10:18:18,769 DEBUG chr3: 2487 hotspots called 2025-01-31 10:18:19,896 DEBUG chrX: 1401 hotspots called 2025-01-31 10:18:20,703 DEBUG chr2: 4110 hotspots called 2025-01-31 10:18:20,924 DEBUG chr6: Calling hotspots 2025-01-31 10:18:21,447 DEBUG chr1: 3253 hotspots called 2025-01-31 10:18:21,792 DEBUG chr7: Calling hotspots 2025-01-31 10:18:21,901 DEBUG chr10: Calling hotspots 2025-01-31 10:18:22,816 DEBUG chr8: Calling hotspots 2025-01-31 10:18:23,085 DEBUG chr14: Calling hotspots 2025-01-31 10:18:23,865 DEBUG chr9: Calling hotspots 2025-01-31 10:18:24,943 DEBUG chr6: 2571 hotspots called 2025-01-31 10:18:25,723 DEBUG chr7: 3440 hotspots called 2025-01-31 10:18:25,764 DEBUG chr10: 2361 hotspots called 2025-01-31 10:18:26,853 DEBUG chr8: 2519 hotspots called 2025-01-31 10:18:26,908 DEBUG chr14: 1623 hotspots called 2025-01-31 10:18:27,319 DEBUG chr11: Calling hotspots 2025-01-31 10:18:27,892 DEBUG chr9: 2850 hotspots called 2025-01-31 10:18:28,309 DEBUG chr12: Calling hotspots 2025-01-31 10:18:28,412 DEBUG chr13: Calling hotspots 2025-01-31 10:18:29,105 DEBUG chr15: Calling hotspots 2025-01-31 10:18:29,175 DEBUG chr16: Calling hotspots 2025-01-31 10:18:29,596 DEBUG chr17: Calling hotspots 2025-01-31 10:18:35,995 DEBUG chr16: 1572 hotspots called 2025-01-31 10:18:36,027 DEBUG chr11: 4137 hotspots called 2025-01-31 10:18:36,155 DEBUG chr17: 2277 hotspots called 2025-01-31 10:18:36,428 DEBUG chr15: 2237 hotspots called 2025-01-31 10:18:36,777 DEBUG chr13: 2398 hotspots called 2025-01-31 10:18:36,889 DEBUG chr12: 1918 hotspots called 2025-01-31 10:18:37,276 DEBUG chr19: Calling hotspots 2025-01-31 10:18:37,621 DEBUG chr18: Calling hotspots 2025-01-31 10:18:41,292 DEBUG chr19: 1742 hotspots called 2025-01-31 10:18:43,604 DEBUG chr18: 1303 hotspots called 2025-01-31 10:18:44,319 DEBUG Results of call_hotspots emitted. 2025-01-31 10:18:44,352 INFO There are 50793 hotspots called at FDR=0.001 2025-01-31 10:18:46,793 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:18:46,793 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:18:57,814 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:18:58,028 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:18:58,243 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:18:58,838 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:18:58,959 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:18:59,416 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:19:12,374 DEBUG chr5: 3755 peaks called 2025-01-31 10:19:12,463 DEBUG chr4: 3768 peaks called 2025-01-31 10:19:12,515 DEBUG chr3: 2906 peaks called 2025-01-31 10:19:13,197 DEBUG chrX: 1610 peaks called 2025-01-31 10:19:13,700 DEBUG chr1: 3819 peaks called 2025-01-31 10:19:13,752 DEBUG chr2: 4754 peaks called 2025-01-31 10:19:20,665 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:19:21,182 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:19:21,257 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:19:21,609 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:19:21,933 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:19:22,077 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:19:36,539 DEBUG chr14: 1887 peaks called 2025-01-31 10:19:37,324 DEBUG chr9: 3307 peaks called 2025-01-31 10:19:37,326 DEBUG chr10: 2783 peaks called 2025-01-31 10:19:37,801 DEBUG chr8: 2950 peaks called 2025-01-31 10:19:38,506 DEBUG chr7: 4073 peaks called 2025-01-31 10:19:39,080 DEBUG chr6: 2931 peaks called 2025-01-31 10:19:43,775 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:19:43,957 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:19:44,094 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:19:44,319 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:19:46,199 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:19:46,244 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:19:54,703 DEBUG chr15: 2618 peaks called 2025-01-31 10:19:55,584 DEBUG chr11: 4890 peaks called 2025-01-31 10:19:56,027 DEBUG chr12: 2200 peaks called 2025-01-31 10:19:56,241 DEBUG chr17: 2694 peaks called 2025-01-31 10:19:56,431 DEBUG chr13: 2871 peaks called 2025-01-31 10:19:56,571 DEBUG chr16: 1817 peaks called 2025-01-31 10:19:58,530 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:19:58,956 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:20:02,130 DEBUG chr19: 2060 peaks called 2025-01-31 10:20:04,358 DEBUG chr18: 1496 peaks called 2025-01-31 10:20:05,118 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:20:05,142 INFO There are 59189 peaks called at FDR=0.001 2025-01-31 10:20:06,221 INFO Saving density 2025-01-31 10:20:06,221 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:20:23,839 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:20:28,629 DEBUG Converting density to bigwig 2025-01-31 10:21:30,127 INFO Program finished